{"text_format":"3","workbook":"xls","n_sheets":4,"sheets":["Genes","Enrichment analysis","Gene decay","Blp reference sequences"],"not_rendered":{"external_links":1,"defined_names":1},"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Genes","index":0,"n_rows":133,"n_cols":11,"rows_kept":133,"flags":["formulas_cached_only"]}
["The annotation of 131 genes which are frequently lost in clade D."]
["ID","Prokka annotation","KO","Type","pvalue","adjust p value","Odds ratio","Frequency in Clade A","Frequency in Clade B","Frequency in Clade C","Frequency in Clade D"]
["Gene 1315","hypothetical protein",null,"Shell",{"v":2.00909774818423e-19,"d":"2.01E-19"},{"v":7.46557086781165e-18,"d":"7.47E-18"},1320.5,{"v":0.979591836734694,"d":"0.980"},{"v":1,"d":"1.000"},{"v":0.973684210526316,"d":"0.974"},{"v":0.479452054794521,"d":"0.479"}]
["Gene 1327","hypothetical protein",null,"Shell",{"v":2.20798353468314e-18,"d":"2.21E-18"},{"v":7.74879554921856e-17,"d":"7.75E-17"},582.666666666667,{"v":0.959183673469388,"d":"0.959"},{"v":0.981481481481482,"d":"0.981"},{"v":1,"d":"1.000"},{"v":0.479452054794521,"d":"0.479"}]
["Gene 1344","Capsule biosynthesis protein CapA",null,"Shell",{"v":2.96015294610712e-17,"d":"2.96E-17"},{"v":9.44408391947407e-16,"d":"9.44E-16"},212.16,{"v":0.959183673469388,"d":"0.959"},{"v":0.981481481481482,"d":"0.981"},{"v":0.947368421052632,"d":"0.947"},{"v":0.465753424657534,"d":"0.466"}]
["Gene 1352","Oleate hydratase",null,"Shell",{"v":1.78791556984336e-16,"d":"1.79E-16"},{"v":5.3274823842927e-15,"d":"5.33E-15"},146.25,{"v":0.979591836734694,"d":"0.980"},{"v":0.981481481481482,"d":"0.981"},{"v":0.894736842105263,"d":"0.895"},{"v":0.465753424657534,"d":"0.466"}]
["Gene 1361","Acetolactate synthase","K01652","Shell",{"v":5.28193289582371e-24,"d":"5.28E-24"},{"v":3.08944167619615e-22,"d":"3.09E-22"},705.333333333333,{"v":1,"d":"1.000"},{"v":0.981481481481482,"d":"0.981"},{"v":0.947368421052632,"d":"0.947"},{"v":0.36986301369863,"d":"0.370"}]
["Gene 1392","NADPH-dependent FMN reductase",null,"Shell",{"v":1.09915702429243e-19,"d":"1.10E-19"},{"v":4.13296126336625e-18,"d":"4.13E-18"},123.061224489796,{"v":0.938775510204082,"d":"0.939"},{"v":0.944444444444444,"d":"0.944"},{"v":0.973684210526316,"d":"0.974"},{"v":0.383561643835616,"d":"0.384"}]
["Gene 1395","hypothetical protein",null,"Shell",{"v":8.67515956323792e-29,"d":"8.68E-29"},{"v":6.85012287012174e-27,"d":"6.85E-27"},797.333333333333,{"v":1,"d":"1.000"},{"v":0.962962962962963,"d":"0.963"},{"v":0.973684210526316,"d":"0.974"},{"v":0.287671232876712,"d":"0.288"}]
["Gene 1403","hypothetical protein",null,"Shell",{"v":8.27197309882586e-10,"d":"8.27E-10"},{"v":1.2497257759116e-08,"d":"1.25E-08"},14.8055555555556,{"v":1,"d":"1.000"},{"v":0.87037037037037,"d":"0.870"},{"v":0.710526315789474,"d":"0.711"},{"v":0.465753424657534,"d":"0.466"}]
["Gene 1404","Acryloyl-CoA reductase (NADH)",null,"Shell",{"v":2.06467928064867e-29,"d":"2.06E-29"},{"v":1.69384143063086e-27,"d":"1.69E-27"},462.375,{"v":0.959183673469388,"d":"0.959"},{"v":1,"d":"1.000"},{"v":0.947368421052632,"d":"0.947"},{"v":0.26027397260274,"d":"0.260"}]
["Gene 1406","hypothetical protein",null,"Shell",{"v":2.69567347462904e-30,"d":"2.70E-30"},{"v":2.36507907489328e-28,"d":"2.37E-28"},470.9375,{"v":0.959183673469388,"d":"0.959"},{"v":0.962962962962963,"d":"0.963"},{"v":1,"d":"1.000"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1407","H(+)/Cl(-) exchange transporter ClcA",null,"Shell",{"v":1.53284908532217e-27,"d":"1.53E-27"},{"v":1.15273900856906e-25,"d":"1.15E-25"},288.32,{"v":0.918367346938776,"d":"0.918"},{"v":1,"d":"1.000"},{"v":0.973684210526316,"d":"0.974"},{"v":0.273972602739726,"d":"0.274"}]
["Gene 1408","Inner membrane amino-acid ABC transporter permease protein YecS","K02029","Shell",{"v":1.30751692562091e-09,"d":"1.31E-09"},{"v":1.92083358584821e-08,"d":"1.92E-08"},13.1800554016621,{"v":1,"d":"1.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.710526315789474,"d":"0.711"},{"v":0.465753424657534,"d":"0.466"}]
["Gene 1424","Free methionine-R-sulfoxide reductase","K08968","Shell",{"v":9.1268301215979e-18,"d":"9.13E-18"},{"v":3.03443083569126e-16,"d":"3.03E-16"},36.3550295857988,{"v":0.775510204081633,"d":"0.776"},{"v":0.981481481481482,"d":"0.981"},{"v":0.973684210526316,"d":"0.974"},{"v":0.342465753424658,"d":"0.342"}]
["Gene 1425","putative ABC transporter ATP-binding protein","K18888","Shell",{"v":3.98232039793485e-41,"d":"3.98E-41"},{"v":6.79900485236606e-39,"d":"6.80E-39"},8680,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.973684210526316,"d":"0.974"},{"v":0.150684931506849,"d":"0.151"}]
["Gene 1426","Spore germination lipase LipC",null,"Shell",{"v":5.32936342272642e-32,"d":"5.33E-32"},{"v":5.42993366796174e-30,"d":"5.43E-30"},221.25,{"v":1,"d":"1.000"},{"v":0.925925925925926,"d":"0.926"},{"v":0.947368421052632,"d":"0.947"},{"v":0.191780821917808,"d":"0.192"}]
["Gene 1427","Putative HMP/thiamine import ATP-binding protein YkoD","K16787","Shell",{"v":7.91791961793987e-06,"d":"7.92E-06"},{"v":6.93723969854732e-05,"d":"6.94E-05"},5.33290816326531,{"v":1,"d":"1.000"},{"v":0.944444444444444,"d":"0.944"},{"v":0.342105263157895,"d":"0.342"},{"v":0.493150684931507,"d":"0.493"}]
["Gene 1432","hypothetical protein",null,"Shell",{"v":3.59725670347757e-10,"d":"3.60E-10"},{"v":5.76747984666695e-09,"d":"5.77E-09"},9.59168241965974,{"v":0.755102040816326,"d":"0.755"},{"v":0.833333333333333,"d":"0.833"},{"v":0.947368421052632,"d":"0.947"},{"v":0.410958904109589,"d":"0.411"}]
["Gene 1435","L-serine dehydratase, beta chain","K01752","Shell",{"v":6.06617032105728e-23,"d":"6.07E-23"},{"v":3.36140332615077e-21,"d":"3.36E-21"},41.6568047337278,{"v":1,"d":"1.000"},{"v":0.981481481481482,"d":"0.981"},{"v":0.684210526315789,"d":"0.684"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1438","hypothetical protein",null,"Shell",{"v":7.31531422923233e-16,"d":"7.32E-16"},{"v":2.09098823466338e-14,"d":"2.09E-14"},16.8975069252078,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.5,"d":"0.500"},{"v":0.315068493150685,"d":"0.315"}]
["Gene 1439","N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase",null,"Shell",{"v":6.26205133847449e-17,"d":"6.26E-17"},{"v":1.95828605471007e-15,"d":"1.96E-15"},21.4532871972318,{"v":0.795918367346939,"d":"0.796"},{"v":0.925925925925926,"d":"0.926"},{"v":0.921052631578947,"d":"0.921"},{"v":0.315068493150685,"d":"0.315"}]
["Gene 1440","hypothetical protein",null,"Shell",{"v":1.07373828001518e-45,"d":"1.07E-45"},{"v":2.71312188594236e-43,"d":"2.71E-43"},2328.25,{"v":1,"d":"1.000"},{"v":0.962962962962963,"d":"0.963"},{"v":1,"d":"1.000"},{"v":0.0821917808219178,"d":"0.082"}]
["Gene 1442","Sensor histidine kinase DesK","K07778","Shell",{"v":1.07751091590441e-21,"d":"1.08E-21"},{"v":5.27646236881251e-20,"d":"5.28E-20"},30.8,{"v":1,"d":"1.000"},{"v":0.962962962962963,"d":"0.963"},{"v":0.657894736842105,"d":"0.658"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1448","hypothetical protein",null,"Shell",{"v":5.9674881917247e-24,"d":"5.97E-24"},{"v":3.45840577129587e-22,"d":"3.46E-22"},36.9336734693878,{"v":0.938775510204082,"d":"0.939"},{"v":0.981481481481482,"d":"0.981"},{"v":0.736842105263158,"d":"0.737"},{"v":0.219178082191781,"d":"0.219"}]
["Gene 1450","Adenosyl-chloride synthase",null,"Shell",{"v":1.63340809482037e-48,"d":"1.63E-48"},{"v":6.87882595665352e-46,"d":"6.88E-46"},2397.75,{"v":1,"d":"1.000"},{"v":0.962962962962963,"d":"0.963"},{"v":1,"d":"1.000"},{"v":0.0547945205479452,"d":"0.055"}]
["Gene 1454","Oligopeptide transport ATP-binding protein OppD","K15583","Shell",{"v":1.94860170952887e-13,"d":"1.95E-13"},{"v":4.41194157673615e-12,"d":"4.41E-12"},10.930056710775,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.394736842105263,"d":"0.395"},{"v":0.328767123287671,"d":"0.329"}]
["Gene 1463","Bacterial regulatory proteins, tetR family",null,"Shell",{"v":2.90994817257299e-57,"d":"2.91E-57"},{"v":3.06369043435727e-54,"d":"3.06E-54"},10220,{"v":1,"d":"1.000"},{"v":0.981481481481482,"d":"0.981"},{"v":1,"d":"1.000"},{"v":0,"d":"0.000"}]
["Gene 1466","Cadmium, cobalt and zinc/H(+)-K(+) antiporter","K16264","Shell",{"v":2.90994817257299e-57,"d":"2.91E-57"},{"v":3.06369043435727e-54,"d":"3.06E-54"},10220,{"v":1,"d":"1.000"},{"v":0.981481481481482,"d":"0.981"},{"v":1,"d":"1.000"},{"v":0,"d":"0.000"}]
["Gene 1472","hypothetical protein",null,"Shell",{"v":1.09123056471492e-55,"d":"1.09E-55"},{"v":6.89330347730416e-53,"d":"6.89E-53"},2536.75,{"v":1,"d":"1.000"},{"v":0.962962962962963,"d":"0.963"},{"v":1,"d":"1.000"},{"v":0,"d":"0.000"}]
["Gene 1476","hypothetical protein",null,"Shell",{"v":2.76445076394442e-54,"d":"2.76E-54"},{"v":1.58754867962154e-51,"d":"1.59E-51"},1119.33333333333,{"v":1,"d":"1.000"},{"v":0.962962962962963,"d":"0.963"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1480","hypothetical protein",null,"Shell",{"v":5.32156772059302e-53,"d":"5.32E-53"},{"v":2.80136194091551e-50,"d":"2.80E-50"},625.0625,{"v":1,"d":"1.000"},{"v":0.944444444444444,"d":"0.944"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1491","hypothetical protein",null,"Shell",{"v":1.01919370358355e-06,"d":"1.02E-06"},{"v":9.95092214147958e-06,"d":"9.95E-06"},3.98010380622837,{"v":0.938775510204082,"d":"0.939"},{"v":0.981481481481482,"d":"0.981"},{"v":0.210526315789474,"d":"0.211"},{"v":0.410958904109589,"d":"0.411"}]
["Gene 1495","2-oxoglutaramate amidase","K13566","Shell",{"v":2.80825124161811e-21,"d":"2.81E-21"},{"v":1.31405356246679e-19,"d":"1.31E-19"},17.545,{"v":1,"d":"1.000"},{"v":0.759259259259259,"d":"0.759"},{"v":0.815789473684211,"d":"0.816"},{"v":0.205479452054795,"d":"0.205"}]
["Gene 1498","hypothetical protein",null,"Shell",{"v":3.13594760382121e-13,"d":"3.14E-13"},{"v":6.99992261955426e-12,"d":"7.00E-12"},7.49489795918367,{"v":0.938775510204082,"d":"0.939"},{"v":0.944444444444444,"d":"0.944"},{"v":0.421052631578947,"d":"0.421"},{"v":0.287671232876712,"d":"0.288"}]
["Gene 1508","CAAX amino terminal protease self- immunity",null,"Shell",{"v":4.96384228975431e-34,"d":"4.96E-34"},{"v":6.03011379699576e-32,"d":"6.03E-32"},43.4132653061224,{"v":1,"d":"1.000"},{"v":0.944444444444444,"d":"0.944"},{"v":0.710526315789474,"d":"0.711"},{"v":0.0821917808219178,"d":"0.082"}]
["Gene 1510","enterobactin exporter EntS",null,"Shell",{"v":1.15238701034232e-47,"d":"1.15E-47"},{"v":4.28213455548968e-45,"d":"4.28E-45"},118.962962962963,{"v":0.959183673469388,"d":"0.959"},{"v":0.888888888888889,"d":"0.889"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1512","Aldehyde-alcohol dehydrogenase",null,"Shell",{"v":1.11478251364843e-19,"d":"1.11E-19"},{"v":4.16691191640066e-18,"d":"4.17E-18"},12.937618147448,{"v":1,"d":"1.000"},{"v":0.907407407407407,"d":"0.907"},{"v":0.526315789473684,"d":"0.526"},{"v":0.205479452054795,"d":"0.205"}]
["Gene 1514","SkfA peptide export ATP-binding protein SkfE",null,"Shell",{"v":6.69874837674704e-22,"d":"6.70E-22"},{"v":3.33196799180402e-20,"d":"3.33E-20"},14.7520661157025,{"v":0.755102040816326,"d":"0.755"},{"v":0.833333333333333,"d":"0.833"},{"v":0.973684210526316,"d":"0.974"},{"v":0.178082191780822,"d":"0.178"}]
["Gene 1515","Helix-turn-helix","K07729","Shell",{"v":2.97299142894544e-22,"d":"2.97E-22"},{"v":1.55209808732631e-20,"d":"1.55E-20"},13.6068052930057,{"v":0.591836734693878,"d":"0.592"},{"v":1,"d":"1.000"},{"v":0.921052631578947,"d":"0.921"},{"v":0.164383561643836,"d":"0.164"}]
["Gene 1516","putative N-acetyltransferase YjcF",null,"Shell",{"v":3.52272160509657e-25,"d":"3.52E-25"},{"v":2.27071758973419e-23,"d":"2.27E-23"},17.1428571428571,{"v":0.938775510204082,"d":"0.939"},{"v":0.981481481481482,"d":"0.981"},{"v":0.552631578947368,"d":"0.553"},{"v":0.136986301369863,"d":"0.137"}]
["Gene 1518","hypothetical protein",null,"Shell",{"v":7.61041266872668e-12,"d":"7.61E-12"},{"v":1.47923005625681e-10,"d":"1.48E-10"},5.53515625,{"v":0.938775510204082,"d":"0.939"},{"v":0.87037037037037,"d":"0.870"},{"v":0.421052631578947,"d":"0.421"},{"v":0.287671232876712,"d":"0.288"}]
["Gene 1521","putative DHNTP pyrophosphohydrolase",null,"Shell",{"v":7.3040383964608e-46,"d":"7.30E-46"},{"v":2.0060700239323e-43,"d":"2.01E-43"},78.4297520661157,{"v":0.959183673469388,"d":"0.959"},{"v":0.888888888888889,"d":"0.889"},{"v":0.921052631578947,"d":"0.921"},{"v":0,"d":"0.000"}]
["Gene 1525","hypothetical protein",null,"Shell",{"v":3.3241588228591e-11,"d":"3.32E-11"},{"v":6.15797984868062e-10,"d":"6.16E-10"},4.81314878892734,{"v":0.938775510204082,"d":"0.939"},{"v":0.833333333333333,"d":"0.833"},{"v":0.421052631578947,"d":"0.421"},{"v":0.287671232876712,"d":"0.288"}]
["Gene 1530","Purine nucleoside phosphorylase DeoD-type",null,"Shell",{"v":1.30465248069841e-36,"d":"1.30E-36"},{"v":1.79162820012432e-34,"d":"1.79E-34"},34.1796875,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.578947368421053,"d":"0.579"},{"v":0.0410958904109589,"d":"0.041"}]
["Gene 1531","hypothetical protein",null,"Shell",{"v":8.80369174135516e-11,"d":"8.80E-11"},{"v":1.53626852845692e-09,"d":"1.54E-09"},4.49959183673469,{"v":0.918367346938776,"d":"0.918"},{"v":0.851851851851852,"d":"0.852"},{"v":0.394736842105263,"d":"0.395"},{"v":0.287671232876712,"d":"0.288"}]
["Gene 1535","hypothetical protein",null,"Shell",{"v":2.71205937992249e-28,"d":"2.71E-28"},{"v":2.08927793938663e-26,"d":"2.09E-26"},17.9591836734694,{"v":0.775510204081633,"d":"0.776"},{"v":0.833333333333333,"d":"0.833"},{"v":0.973684210526316,"d":"0.974"},{"v":0.0958904109589041,"d":"0.096"}]
["Gene 1537","hypothetical protein",null,"Shell",{"v":1.24778125247789e-42,"d":"1.25E-42"},{"v":2.71801178341476e-40,"d":"2.72E-40"},40.88,{"v":0.918367346938776,"d":"0.918"},{"v":0.814814814814815,"d":"0.815"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1538","hypothetical protein","K01992","Shell",{"v":3.11295456747643e-13,"d":"3.11E-13"},{"v":6.98318331869003e-12,"d":"6.98E-12"},5.45454545454545,{"v":0.63265306122449,"d":"0.633"},{"v":0.981481481481482,"d":"0.981"},{"v":0.631578947368421,"d":"0.632"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1539","Phosphoglucomutase","K01835","Shell",{"v":3.23977624881781e-10,"d":"3.24E-10"},{"v":5.22083330708728e-09,"d":"5.22E-09"},3.95032870708546,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.0263157894736842,"d":"0.026"},{"v":0.287671232876712,"d":"0.288"}]
["Gene 1540","ABC-2 type transporter","K01992","Shell",{"v":1.24778125247789e-42,"d":"1.25E-42"},{"v":2.71801178341476e-40,"d":"2.72E-40"},40.88,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.605263157894737,"d":"0.605"},{"v":0,"d":"0.000"}]
["Gene 1541","Nucleoside triphosphatase NudI",null,"Shell",{"v":1.02609051954218e-27,"d":"1.03E-27"},{"v":7.80941423126257e-26,"d":"7.81E-26"},16.2272727272727,{"v":0.755102040816326,"d":"0.755"},{"v":0.833333333333333,"d":"0.833"},{"v":0.973684210526316,"d":"0.974"},{"v":0.0958904109589041,"d":"0.096"}]
["Gene 1542","Daunorubicin/doxorubicin resistance ATP-binding protein DrrA","K01990","Shell",{"v":1.24778125247789e-42,"d":"1.25E-42"},{"v":2.71801178341476e-40,"d":"2.72E-40"},40.88,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.605263157894737,"d":"0.605"},{"v":0,"d":"0.000"}]
["Gene 1544","VIT family protein","K22736","Shell",{"v":6.94078321690819e-42,"d":"6.94E-42"},{"v":1.32863416912755e-39,"d":"1.33E-39"},35.64453125,{"v":1,"d":"1.000"},{"v":0.981481481481482,"d":"0.981"},{"v":0.605263157894737,"d":"0.605"},{"v":0,"d":"0.000"}]
["Gene 1545","hypothetical protein",null,"Shell",{"v":6.94078321690819e-42,"d":"6.94E-42"},{"v":1.32863416912755e-39,"d":"1.33E-39"},35.64453125,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.578947368421053,"d":"0.579"},{"v":0,"d":"0.000"}]
["Gene 1546","hypothetical protein",null,"Shell",{"v":6.94078321690819e-42,"d":"6.94E-42"},{"v":1.32863416912755e-39,"d":"1.33E-39"},35.64453125,{"v":0.897959183673469,"d":"0.898"},{"v":0.796296296296296,"d":"0.796"},{"v":1,"d":"1.000"},{"v":0,"d":"0.000"}]
["Gene 1547","Oligopeptide transport system permease protein OppC","K15582","Shell",{"v":7.33286578134559e-15,"d":"7.33E-15"},{"v":1.84548657931315e-13,"d":"1.85E-13"},6.0673828125,{"v":1,"d":"1.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.368421052631579,"d":"0.368"},{"v":0.219178082191781,"d":"0.219"}]
["Gene 1549","Glucosamine-6-phosphate deaminase","K02564","Shell",{"v":3.67453229130424e-41,"d":"3.67E-41"},{"v":6.44778346782468e-39,"d":"6.45E-39"},31.3217993079585,{"v":1,"d":"1.000"},{"v":0.981481481481482,"d":"0.981"},{"v":0.578947368421053,"d":"0.579"},{"v":0,"d":"0.000"}]
["Gene 1552","hypothetical protein",null,"Shell",{"v":6.60362144500299e-05,"d":"6.60E-05"},0.000474034962137317,2.20454545454545,{"v":0.653061224489796,"d":"0.653"},{"v":0.87037037037037,"d":"0.870"},{"v":0.473684210526316,"d":"0.474"},{"v":0.397260273972603,"d":"0.397"}]
["Gene 1553","Transcriptional regulatory protein YpdB",null,"Shell",{"v":3.67453229130424e-41,"d":"3.67E-41"},{"v":6.44778346782468e-39,"d":"6.45E-39"},31.3217993079585,{"v":0.979591836734694,"d":"0.980"},{"v":1,"d":"1.000"},{"v":0.578947368421053,"d":"0.579"},{"v":0,"d":"0.000"}]
["Gene 1554","Nickel import ATP-binding protein NikO","K02006","Shell",{"v":4.32505193362829e-36,"d":"4.33E-36"},{"v":5.81305384355956e-34,"d":"5.81E-34"},23.994459833795,{"v":0.959183673469388,"d":"0.959"},{"v":0.759259259259259,"d":"0.759"},{"v":0.894736842105263,"d":"0.895"},{"v":0.0273972602739726,"d":"0.027"}]
["Gene 1556","hypothetical protein",null,"Shell",{"v":4.57391345768202e-26,"d":"4.57E-26"},{"v":3.28334219456561e-24,"d":"3.28E-24"},12.2496,{"v":0.918367346938776,"d":"0.918"},{"v":0.62962962962963,"d":"0.630"},{"v":0.973684210526316,"d":"0.974"},{"v":0.0958904109589041,"d":"0.096"}]
["Gene 1560","hypothetical protein",null,"Shell",{"v":1.52804786598663e-25,"d":"1.53E-25"},{"v":1.03792240531586e-23,"d":"1.04E-23"},11.2278106508876,{"v":0.755102040816326,"d":"0.755"},{"v":0.796296296296296,"d":"0.796"},{"v":0.921052631578947,"d":"0.921"},{"v":0.0958904109589041,"d":"0.096"}]
["Gene 1564","Aminopeptidase PepS","K19689","Shell",{"v":5.88246897800027e-11,"d":"5.88E-11"},{"v":1.04088393652739e-09,"d":"1.04E-09"},3.471875,{"v":0.714285714285714,"d":"0.714"},{"v":0.62962962962963,"d":"0.630"},{"v":0.842105263157895,"d":"0.842"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1565","Helix-turn-helix domain protein",null,"Shell",{"v":4.18271366064372e-39,"d":"4.18E-39"},{"v":6.44443955958204e-37,"d":"6.44E-37"},22.0825,{"v":1,"d":"1.000"},{"v":1,"d":"1.000"},{"v":0.473684210526316,"d":"0.474"},{"v":0,"d":"0.000"}]
["Gene 1567","Modification methylase FokI",null,"Shell",{"v":7.47373071119211e-36,"d":"7.47E-36"},{"v":9.83574102137512e-34,"d":"9.84E-34"},17.702479338843,{"v":0.816326530612245,"d":"0.816"},{"v":0.962962962962963,"d":"0.963"},{"v":0.710526315789474,"d":"0.711"},{"v":0.0136986301369863,"d":"0.014"}]
["Gene 1568","hypothetical protein",null,"Shell",{"v":3.11608038545332e-09,"d":"3.12E-09"},{"v":4.29787768447787e-08,"d":"4.30E-08"},2.97448979591837,{"v":0.959183673469388,"d":"0.959"},{"v":0.407407407407407,"d":"0.407"},{"v":0.789473684210526,"d":"0.789"},{"v":0.273972602739726,"d":"0.274"}]
["Gene 1569","hypothetical protein",null,"Shell",{"v":1.93937288289572e-08,"d":"1.94E-08"},{"v":2.41161781520714e-07,"d":"2.41E-07"},2.75608436992969,{"v":0.183673469387755,"d":"0.184"},{"v":1,"d":"1.000"},{"v":0.921052631578947,"d":"0.921"},{"v":0.287671232876712,"d":"0.288"}]
["Gene 1570","CRISPR-associated endoribonuclease Cas2","K09951","Shell",{"v":2.37938673003631e-11,"d":"2.38E-11"},{"v":4.48674208168339e-10,"d":"4.49E-10"},3.68836291913215,{"v":0.918367346938776,"d":"0.918"},{"v":0.555555555555556,"d":"0.556"},{"v":0.710526315789474,"d":"0.711"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1574","putative adenylyltransferase/sulfurtransferase MoeZ",null,"Shell",{"v":8.08476904535686e-38,"d":"8.08E-38"},{"v":1.18770897812836e-35,"d":"1.19E-35"},17.948347107438,{"v":0.938775510204082,"d":"0.939"},{"v":0.962962962962963,"d":"0.963"},{"v":0.552631578947368,"d":"0.553"},{"v":0,"d":"0.000"}]
["Gene 1575","N-acetylmuramoyl-L-alanine amidase",null,"Shell",{"v":4.85649465540701e-21,"d":"4.86E-21"},{"v":2.2393048714019e-19,"d":"2.24E-19"},7.32570239334027,{"v":0.979591836734694,"d":"0.980"},{"v":0.981481481481482,"d":"0.981"},{"v":0.236842105263158,"d":"0.237"},{"v":0.123287671232877,"d":"0.123"}]
["Gene 1577","hypothetical protein",null,"Shell",{"v":3.40773792881793e-20,"d":"3.41E-20"},{"v":1.3126024692892e-18,"d":"1.31E-18"},7.21123829344433,{"v":0.918367346938776,"d":"0.918"},{"v":0.833333333333333,"d":"0.833"},{"v":0.526315789473684,"d":"0.526"},{"v":0.136986301369863,"d":"0.137"}]
["Gene 1580","CRISPR-associated endonuclease Cas1",null,"Shell",{"v":1.97622412398358e-11,"d":"1.98E-11"},{"v":3.76018306963984e-10,"d":"3.76E-10"},3.535,{"v":0.918367346938776,"d":"0.918"},{"v":0.555555555555556,"d":"0.556"},{"v":0.684210526315789,"d":"0.684"},{"v":0.232876712328767,"d":"0.233"}]
["Gene 1582","multidrug efflux pump VmrA",null,"Shell",{"v":4.56815336901757e-24,"d":"4.57E-24"},{"v":2.72236083321547e-22,"d":"2.72E-22"},7.6690946930281,{"v":0.571428571428571,"d":"0.571"},{"v":0.87037037037037,"d":"0.870"},{"v":0.921052631578947,"d":"0.921"},{"v":0.0821917808219178,"d":"0.082"}]
["Gene 1585","Helix-turn-helix domain protein",null,"Shell",{"v":4.52445057413949e-23,"d":"4.52E-23"},{"v":2.52928798910081e-21,"d":"2.53E-21"},7.55463059313215,{"v":0.693877551020408,"d":"0.694"},{"v":0.796296296296296,"d":"0.796"},{"v":0.868421052631579,"d":"0.868"},{"v":0.0958904109589041,"d":"0.096"}]
["Gene 1586","DNA polymerase IV","K03502","Shell",{"v":2.87107879007508e-14,"d":"2.87E-14"},{"v":6.8699260291304e-13,"d":"6.87E-13"},4.2084487534626,{"v":0.836734693877551,"d":"0.837"},{"v":0.722222222222222,"d":"0.722"},{"v":0.605263157894737,"d":"0.605"},{"v":0.191780821917808,"d":"0.192"}]
["Gene 1588","Microcin C7 self-immunity protein MccF",null,"Shell",{"v":2.00947673695621e-13,"d":"2.01E-13"},{"v":4.53352305262585e-12,"d":"4.53E-12"},4.13711911357341,{"v":0.653061224489796,"d":"0.653"},{"v":0.703703703703704,"d":"0.704"},{"v":0.868421052631579,"d":"0.868"},{"v":0.205479452054795,"d":"0.205"}]
["Gene 1591","Major Facilitator Superfamily protein",null,"Shell",{"v":7.57216453325141e-14,"d":"7.57E-14"},{"v":1.78482699091601e-12,"d":"1.78E-12"},3.95660749506903,{"v":0.469387755102041,"d":"0.469"},{"v":1,"d":"1.000"},{"v":0.657894736842105,"d":"0.658"},{"v":0.191780821917808,"d":"0.192"}]
["Gene 1592","Helix-turn-helix domain protein",null,"Shell",{"v":9.71025440396481e-26,"d":"9.71E-26"},{"v":6.7406238538292e-24,"d":"6.74E-24"},8.38666666666667,{"v":0.63265306122449,"d":"0.633"},{"v":0.888888888888889,"d":"0.889"},{"v":0.842105263157895,"d":"0.842"},{"v":0.0684931506849315,"d":"0.068"}]
["Gene 1597","Purine nucleoside phosphorylase DeoD-type",null,"Shell",{"v":2.71968746487261e-34,"d":"2.72E-34"},{"v":3.36867955207848e-32,"d":"3.37E-32"},10.5216836734694,{"v":0.857142857142857,"d":"0.857"},{"v":0.944444444444444,"d":"0.944"},{"v":0.526315789473684,"d":"0.526"},{"v":0,"d":"0.000"}]
["Gene 1598","hypothetical protein",null,"Shell",{"v":6.34995860610298e-33,"d":"6.35E-33"},{"v":7.03731377451799e-31,"d":"7.04E-31"},11.2592592592593,{"v":0.857142857142857,"d":"0.857"},{"v":0.944444444444444,"d":"0.944"},{"v":0.552631578947368,"d":"0.553"},{"v":0.0136986301369863,"d":"0.014"}]
["Gene 1599","CRISPR-associated protein Csn2","K19137","Shell",{"v":7.04640499128985e-10,"d":"7.05E-10"},{"v":1.08039175558199e-08,"d":"1.08E-08"},2.75568181818182,{"v":0.857142857142857,"d":"0.857"},{"v":0.555555555555556,"d":"0.556"},{"v":0.657894736842105,"d":"0.658"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1600","hypothetical protein",null,"Shell",{"v":7.76930955834432e-12,"d":"7.77E-12"},{"v":1.50548246871353e-10,"d":"1.51E-10"},3.39083878643664,{"v":0.489795918367347,"d":"0.490"},{"v":0.703703703703704,"d":"0.704"},{"v":1,"d":"1.000"},{"v":0.219178082191781,"d":"0.219"}]
["Gene 1607","Formaldehyde dismutase",null,"Shell",{"v":3.28425706964961e-33,"d":"3.28E-33"},{"v":3.77211852890483e-31,"d":"3.77E-31"},9.00333333333333,{"v":1,"d":"1.000"},{"v":0.444444444444444,"d":"0.444"},{"v":1,"d":"1.000"},{"v":0,"d":"0.000"}]
["Gene 1610","hypothetical protein",null,"Shell",{"v":9.56579729024154e-34,"d":"9.57E-34"},{"v":1.140134744952e-31,"d":"1.14E-31"},9.7217598097503,{"v":0.857142857142857,"d":"0.857"},{"v":0.833333333333333,"d":"0.833"},{"v":0.657894736842105,"d":"0.658"},{"v":0,"d":"0.000"}]
["Gene 1616","hypothetical protein",null,"Shell",{"v":6.69080371849119e-23,"d":"6.69E-23"},{"v":3.67528757301816e-21,"d":"3.68E-21"},5.50925925925926,{"v":0.775510204081633,"d":"0.776"},{"v":0.62962962962963,"d":"0.630"},{"v":0.868421052631579,"d":"0.868"},{"v":0.0684931506849315,"d":"0.068"}]
["Gene 1622","putative inner membrane transporter YicL",null,"Shell",{"v":2.08393779150762e-21,"d":"2.08E-21"},{"v":9.97290532496488e-20,"d":"9.97E-20"},4.56015779092702,{"v":0.714285714285714,"d":"0.714"},{"v":1,"d":"1.000"},{"v":0.342105263157895,"d":"0.342"},{"v":0.0684931506849315,"d":"0.068"}]
["Gene 1625","short chain dehydrogenase",null,"Shell",{"v":1.24384707090396e-30,"d":"1.24E-30"},{"v":1.13875100679715e-28,"d":"1.14E-28"},6.31673469387755,{"v":0.979591836734694,"d":"0.980"},{"v":0.388888888888889,"d":"0.389"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1627","hypothetical protein",null,"Shell",{"v":1.24384707090396e-30,"d":"1.24E-30"},{"v":1.13875100679715e-28,"d":"1.14E-28"},6.31673469387755,{"v":1,"d":"1.000"},{"v":0.37037037037037,"d":"0.370"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1628","FtsX-like permease family protein",null,"Shell",{"v":3.4506335556574e-30,"d":"3.45E-30"},{"v":2.98597974946408e-28,"d":"2.99E-28"},5.91435185185185,{"v":1,"d":"1.000"},{"v":0.351851851851852,"d":"0.352"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1637","L-serine dehydratase, alpha chain","K01752","Shell",{"v":3.09347933221512e-07,"d":"3.09E-07"},{"v":3.28428721707612e-06,"d":"3.28E-06"},1.64094650205761,{"v":0.489795918367347,"d":"0.490"},{"v":0.944444444444444,"d":"0.944"},{"v":0.315789473684211,"d":"0.316"},{"v":0.246575342465753,"d":"0.247"}]
["Gene 1639","putative iron uptake system component EfeM precursor","K07224","Shell",{"v":2.19910376283858e-25,"d":"2.20E-25"},{"v":1.46228825998435e-23,"d":"1.46E-23"},4.76134122287968,{"v":1,"d":"1.000"},{"v":0.759259259259259,"d":"0.759"},{"v":0.315789473684211,"d":"0.316"},{"v":0.0273972602739726,"d":"0.027"}]
["Gene 1641","Ferrochelatase",null,"Shell",{"v":3.05138119365797e-29,"d":"3.05E-29"},{"v":2.43994620257435e-27,"d":"2.44E-27"},5.20706371191136,{"v":1,"d":"1.000"},{"v":0.351851851851852,"d":"0.352"},{"v":0.921052631578947,"d":"0.921"},{"v":0,"d":"0.000"}]
["Gene 1642","Pyrimidine-nucleoside phosphorylase","K00756","Shell",{"v":1.01381227049713e-11,"d":"1.01E-11"},{"v":1.94068245840314e-10,"d":"1.94E-10"},2.2204,{"v":0.959183673469388,"d":"0.959"},{"v":0.462962962962963,"d":"0.463"},{"v":0.5,"d":"0.500"},{"v":0.164383561643836,"d":"0.164"}]
["Gene 1644","Sec-independent protein translocase protein TatCd","K03118","Shell",{"v":1.00059252143974e-24,"d":"1.00E-24"},{"v":6.13664364848044e-23,"d":"6.14E-23"},4.481875,{"v":1,"d":"1.000"},{"v":0.759259259259259,"d":"0.759"},{"v":0.289473684210526,"d":"0.289"},{"v":0.0273972602739726,"d":"0.027"}]
["Gene 1646","Sec-independent protein translocase protein TatAd",null,"Shell",{"v":1.00059252143974e-24,"d":"1.00E-24"},{"v":6.13664364848044e-23,"d":"6.14E-23"},4.481875,{"v":1,"d":"1.000"},{"v":0.759259259259259,"d":"0.759"},{"v":0.289473684210526,"d":"0.289"},{"v":0.0273972602739726,"d":"0.027"}]
["Gene 1647","putative deferrochelatase/peroxidase EfeN precursor","K16301","Shell",{"v":1.00059252143974e-24,"d":"1.00E-24"},{"v":6.13664364848044e-23,"d":"6.14E-23"},4.481875,{"v":1,"d":"1.000"},{"v":0.759259259259259,"d":"0.759"},{"v":0.289473684210526,"d":"0.289"},{"v":0.0273972602739726,"d":"0.027"}]
["Gene 1651","Capsular polysaccharide type 8 biosynthesis protein cap8A",null,"Shell",{"v":5.689730476493e-08,"d":"5.69E-08"},{"v":6.60699033455998e-07,"d":"6.61E-07"},1.62049586776859,{"v":0.73469387755102,"d":"0.735"},{"v":0.592592592592593,"d":"0.593"},{"v":0.473684210526316,"d":"0.474"},{"v":0.219178082191781,"d":"0.219"}]
["Gene 1654","Response regulator SaeR",null,"Shell",{"v":2.56204147700593e-11,"d":"2.56E-11"},{"v":4.77416401482196e-10,"d":"4.77E-10"},2.11072664359862,{"v":0.918367346938776,"d":"0.918"},{"v":0.259259259259259,"d":"0.259"},{"v":0.815789473684211,"d":"0.816"},{"v":0.164383561643836,"d":"0.164"}]
["Gene 1658","1,5-anhydro-D-fructose reductase",null,"Shell",{"v":3.4010304994213e-11,"d":"3.40E-11"},{"v":6.2454388560594e-10,"d":"6.25E-10"},2.00776627218935,{"v":1,"d":"1.000"},{"v":0.240740740740741,"d":"0.241"},{"v":0.710526315789474,"d":"0.711"},{"v":0.164383561643836,"d":"0.164"}]
["Gene 1661","CRISPR-associated endonuclease Cas9 2","K09952","Shell",{"v":9.76319725611062e-09,"d":"9.76E-09"},{"v":1.27689683368221e-07,"d":"1.28E-07"},1.73045267489712,{"v":0.857142857142857,"d":"0.857"},{"v":0.537037037037037,"d":"0.537"},{"v":0.421052631578947,"d":"0.421"},{"v":0.205479452054795,"d":"0.205"}]
["Gene 1662","Transcriptional activator protein CopR","K14983","Shell",{"v":2.20404466442443e-15,"d":"2.20E-15"},{"v":6.00127161429704e-14,"d":"6.00E-14"},2.62369791666667,{"v":0.877551020408163,"d":"0.878"},{"v":0.925925925925926,"d":"0.926"},{"v":0,"d":"0.000"},{"v":0.10958904109589,"d":"0.110"}]
["Gene 1673","hypothetical protein",null,"Shell",{"v":6.07104838508658e-15,"d":"6.07E-15"},{"v":1.53403250594368e-13,"d":"1.53E-13"},2.49062890462307,{"v":0.693877551020408,"d":"0.694"},{"v":0.666666666666667,"d":"0.667"},{"v":0.578947368421053,"d":"0.579"},{"v":0.10958904109589,"d":"0.110"}]
["Gene 1680","Ferrous iron permease EfeU precursor","K07243","Shell",{"v":4.36361767738791e-26,"d":"4.36E-26"},{"v":3.16838768598384e-24,"d":"3.17E-24"},3.46074074074074,{"v":0.918367346938776,"d":"0.918"},{"v":0.759259259259259,"d":"0.759"},{"v":0.263157894736842,"d":"0.263"},{"v":0,"d":"0.000"}]
["Gene 1694","Oligopeptide transport system permease protein OppC","K15582","Shell",{"v":1.93035004480025e-10,"d":"1.93E-10"},{"v":3.29568141432519e-09,"d":"3.30E-09"},1.60295475530933,{"v":0.653061224489796,"d":"0.653"},{"v":0.722222222222222,"d":"0.722"},{"v":0.342105263157895,"d":"0.342"},{"v":0.150684931506849,"d":"0.151"}]
["Gene 1707","Sulfur carrier protein ThiS adenylyltransferase",null,"Shell",{"v":1.47032092604864e-13,"d":"1.47E-13"},{"v":3.34101341361483e-12,"d":"3.34E-12"},1.78890306122449,{"v":0.653061224489796,"d":"0.653"},{"v":0.574074074074074,"d":"0.574"},{"v":0.578947368421053,"d":"0.579"},{"v":0.0958904109589041,"d":"0.096"}]
["Gene 1714","4-alpha-glucanotransferase","K00705","Shell",{"v":1.31817033595898e-16,"d":"1.32E-16"},{"v":3.98415407284827e-15,"d":"3.98E-15"},1.96165289256198,{"v":0.714285714285714,"d":"0.714"},{"v":0.777777777777778,"d":"0.778"},{"v":0.236842105263158,"d":"0.237"},{"v":0.0547945205479452,"d":"0.055"}]
["Gene 1717","bifunctional RNase H/acid phosphatase",null,"Shell",{"v":1.19045714765705e-12,"d":"1.19E-12"},{"v":2.54058033842892e-11,"d":"2.54E-11"},1.55472565354783,{"v":0.918367346938776,"d":"0.918"},{"v":0.462962962962963,"d":"0.463"},{"v":0.315789473684211,"d":"0.316"},{"v":0.0958904109589041,"d":"0.096"}]
["Gene 1719","nucleoside triphosphate pyrophosphohydrolase",null,"Shell",{"v":5.20508329433754e-24,"d":"5.21E-24"},{"v":3.07294496918974e-22,"d":"3.07E-22"},2.6572,{"v":0.857142857142857,"d":"0.857"},{"v":0.907407407407407,"d":"0.907"},{"v":0,"d":"0.000"},{"v":0,"d":"0.000"}]
["Gene 1730","Glycogen phosphorylase","K00688","Shell",{"v":1.77294319651587e-16,"d":"1.77E-16"},{"v":5.30790624283921e-15,"d":"5.31E-15"},1.87021683673469,{"v":0.714285714285714,"d":"0.714"},{"v":0.759259259259259,"d":"0.759"},{"v":0.236842105263158,"d":"0.237"},{"v":0.0547945205479452,"d":"0.055"}]
["Gene 1742","Lipid A export ATP-binding/permease protein MsbA","K18887","Shell",{"v":2.98321441950538e-17,"d":"2.98E-17"},{"v":9.46983190352536e-16,"d":"9.47E-16"},1.80978762696214,{"v":0.224489795918367,"d":"0.224"},{"v":0.944444444444444,"d":"0.944"},{"v":0.578947368421053,"d":"0.579"},{"v":0.0410958904109589,"d":"0.041"}]
["Gene 1749","Histidine ammonia-lyase","K01745","Shell",{"v":3.03781518694728e-14,"d":"3.04E-14"},{"v":7.24146359847018e-13,"d":"7.24E-13"},1.53,{"v":0.408163265306122,"d":"0.408"},{"v":0.925925925925926,"d":"0.926"},{"v":0.289473684210526,"d":"0.289"},{"v":0.0684931506849315,"d":"0.068"}]
["Gene 1752","Glucose-6-phosphate isomerase","K01810","Shell",{"v":8.87816511492085e-20,"d":"8.88E-20"},{"v":3.35828557071587e-18,"d":"3.36E-18"},1.86149584487535,{"v":1,"d":"1.000"},{"v":0.648148148148148,"d":"0.648"},{"v":0,"d":"0.000"},{"v":0.0136986301369863,"d":"0.014"}]
["Gene 1753","Aminoacyltransferase FemB",null,"Shell",{"v":8.87816511492085e-20,"d":"8.88E-20"},{"v":3.35828557071587e-18,"d":"3.36E-18"},1.86149584487535,{"v":0.510204081632653,"d":"0.510"},{"v":0.777777777777778,"d":"0.778"},{"v":0.447368421052632,"d":"0.447"},{"v":0.0136986301369863,"d":"0.014"}]
["Gene 1756","Energy-coupling factor transporter transmembrane protein EcfT","K02008","Shell",{"v":1.70103164512922e-21,"d":"1.70E-21"},{"v":8.26570530944712e-20,"d":"8.27E-20"},1.88734995383195,{"v":0.551020408163265,"d":"0.551"},{"v":0.592592592592593,"d":"0.593"},{"v":0.657894736842105,"d":"0.658"},{"v":0,"d":"0.000"}]
["Gene 1761","Arginine-binding extracellular protein ArtP precursor","K02030","Shell",{"v":6.52964833193626e-22,"d":"6.53E-22"},{"v":3.27363400895566e-20,"d":"3.27E-20"},1.97863520408163,{"v":0.816326530612245,"d":"0.816"},{"v":0.296296296296296,"d":"0.296"},{"v":0.763157894736842,"d":"0.763"},{"v":0,"d":"0.000"}]
["Gene 1775","Linear gramicidin synthase subunit B",null,"Shell",{"v":7.76319524347305e-21,"d":"7.76E-21"},{"v":3.26934029020128e-19,"d":"3.27E-19"},1.71962079862109,{"v":0.693877551020408,"d":"0.694"},{"v":0.518518518518518,"d":"0.519"},{"v":0.526315789473684,"d":"0.526"},{"v":0,"d":"0.000"}]
["Gene 1781","Peptidoglycan-N-acetylglucosamine deacetylase",null,"Shell",{"v":7.76319524347305e-21,"d":"7.76E-21"},{"v":3.26934029020128e-19,"d":"3.27E-19"},1.71962079862109,{"v":0.489795918367347,"d":"0.490"},{"v":0.907407407407407,"d":"0.907"},{"v":0.236842105263158,"d":"0.237"},{"v":0,"d":"0.000"}]
["Gene 1783","Relaxase/Mobilisation nuclease domain protein",null,"Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1785","Bacteriocin class II with double-glycine leader peptide",null,"Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1786","Lactococcin A secretion protein LcnD","K20345","Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1787","Accessory gene regulator protein A","K07707","Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1788","Lactococcin-G-processing and transport ATP-binding protein LagD","K20344","Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1789","hypothetical protein",null,"Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1790","sensory histidine kinase DcuS","K07706","Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1791","Bacterial mobilisation protein (MobC)",null,"Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1792","hypothetical protein",null,"Shell",{"v":5.35456488606059e-21,"d":"5.35E-21"},{"v":2.31676619077019e-19,"d":"2.32E-19"},1.80112960760999,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1801","LytTr DNA-binding domain protein",null,"Shell",{"v":7.76319524347305e-21,"d":"7.76E-21"},{"v":3.26934029020128e-19,"d":"3.27E-19"},1.71962079862109,{"v":0,"d":"0.000"},{"v":0.851851851851852,"d":"0.852"},{"v":0.947368421052632,"d":"0.947"},{"v":0,"d":"0.000"}]
["Gene 1805","hypothetical protein","K03095","Shell",{"v":2.03978296084758e-20,"d":"2.04E-20"},{"v":7.90509752372651e-19,"d":"7.91E-19"},1.6425,{"v":0,"d":"0.000"},{"v":0.925925925925926,"d":"0.926"},{"v":0.815789473684211,"d":"0.816"},{"v":0,"d":"0.000"}]
["Gene 1806","putative peptide export ATP-binding protein YydI",null,"Shell",{"v":2.03978296084758e-20,"d":"2.04E-20"},{"v":7.90509752372651e-19,"d":"7.91E-19"},1.6425,{"v":0.0204081632653061,"d":"0.020"},{"v":0.796296296296296,"d":"0.796"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1807","CAAX amino terminal protease self- immunity",null,"Shell",{"v":2.03978296084758e-20,"d":"2.04E-20"},{"v":7.90509752372651e-19,"d":"7.91E-19"},1.6425,{"v":0,"d":"0.000"},{"v":0.814814814814815,"d":"0.815"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]
["Gene 1808","putative peptide export permease protein YydJ",null,"Shell",{"v":2.03978296084758e-20,"d":"2.04E-20"},{"v":7.90509752372651e-19,"d":"7.91E-19"},1.6425,{"v":0.0204081632653061,"d":"0.020"},{"v":0.814814814814815,"d":"0.815"},{"v":0.947368421052632,"d":"0.947"},{"v":0,"d":"0.000"}]
["Gene 1810","Bacteriocin class II with double-glycine leader peptide",null,"Shell",{"v":2.03978296084758e-20,"d":"2.04E-20"},{"v":7.90509752372651e-19,"d":"7.91E-19"},1.6425,{"v":0,"d":"0.000"},{"v":0.814814814814815,"d":"0.815"},{"v":0.973684210526316,"d":"0.974"},{"v":0,"d":"0.000"}]

{"sheet":"Enrichment analysis","index":1,"n_rows":5,"n_cols":10,"rows_kept":5,"flags":["formulas_cached_only"]}
["Pathway enrichment of 131 genes which are frequently lost in clade D."]
["ID","Description","GeneRatio","BgRatio","pvalue","p.adjust","qvalue","geneID","geneInformation","Count"]
["stc02024","Quorum sensing","13/36","46/622",{"v":2.38876987052492e-07,"d":"2.39E-07"},{"v":5.97192467631229e-06,"d":"5.97E-06"},{"v":5.28043866116034e-06,"d":"5.28E-06"},"str0172/str0173/str0174/str0175/str0176/str0177/str0792/str1439/str1440/str1686/str1687/str1689/str1691","str0172 ko:K15582 ; oligopeptide transport system ATP-binding protein & str0173 ko:K15582 ; oligopeptide transport system ATP-binding protein & str0174 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0175 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0176 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0177 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0792 ko:K14983 ; two-component system, OmpR family, response regulator CiaR & str1439 ko:K15583 amiE; oligopeptide transport system ATP-binding protein & str1440 ko:K15582 amiD; oligopeptide transport system permease protein & str1686 ko:K07707 rr09; two-component system, LytTR family, response regulator AgrA & str1687 ko:K07706 hk09; wo-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] & str1689 ko:K20345 ; membrane fusion protein, peptide pheromone/bacteriocin exporter & str1691 ko:K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter & ",13]
["stc01501","beta-Lactam resistance","8/36","20/622",{"v":4.3571237552857e-06,"d":"4.36E-06"},{"v":5.44640469410712e-05,"d":"5.45E-05"},{"v":4.81576836110525e-05,"d":"4.82E-05"},"str0172/str0173/str0174/str0175/str0176/str0177/str1439/str1440","str0172 ko:K15582 ; oligopeptide transport system ATP-binding protein & str0173 ko:K15582 ; oligopeptide transport system ATP-binding protein & str0174 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0175 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0176 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0177 ko:K15583 ; oligopeptide transport system ATP-binding protein & str1439 ko:K15583 amiE; oligopeptide ABC transporter ATP-binding protein & str1440 ko:K15582 amiD; oligopeptide ABC transporter membrane-binding protein",8]
["stc02010","ABC transporters","14/36","74/622",{"v":1.56970286758673e-05,"d":"1.57E-05"},0.000130808572298894,0.000115662316559022,"str0172/str0173/str0174/str0175/str0176/str0177/str0289/str0290/str0538/str0539/str1439/str1440/str1691/str2008","str0172 ko:K15582 ; oligopeptide transport system ATP-binding protein & str0173 ko:K15582 ; oligopeptide transport system ATP-binding protein & str0174 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0175 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0176 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0177 ko:K15583 ; oligopeptide transport system ATP-binding protein & str0289 ko:K02008 cbiQ; cobalt/nickel transport system permease protein & str0290 ko:K02006 cbiO; cobalt/nickel transport system ATP-binding protein & str0538 ko:K18887 ; ATP-binding cassette, subfamily B, multidrug efflux pump & str0539 ko:K18888 ; ATP-binding cassette, subfamily B, multidrug efflux pump & str1439 ko:K15583 amiE; oligopeptide ABC transporter ATP-binding protein & str1440 ko:K15582 amiD; oligopeptide ABC transporter membrane-binding protein & str1691 ko:K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter & str2008 ko:K16787 ; energy-coupling factor transport system ATP-binding protein [EC:3.6.3.-]",14]

{"sheet":"Gene decay","index":2,"n_rows":134,"n_cols":11,"rows_kept":134,"merged":[[0,0,0,10]],"flags":["formulas_cached_only"]}
["The comparison result of 131 absent genes in S. thermophilus with other 10 Streprococcus species, where 1 and 0 marks the gene present or not for each strain."]
["Bacteria","Streptococcus_equinus_CNUG6","Streptococcus_infantarius_ICDDRB_NRC_S5","Streptococcus_suis_ISU2812","Streptococcus_salivarius_NCTC8618","Streptococcus_pneumoniae_NCTC7465","Streptococcus_infantarius_subsp_infantarius_CJ18","Streptococcus_mitis_SVGS061","Streptococcus_mitis_KCOM1350","Streptococcus_macedonicus_ACA_DC198","Streptococcus_gallolyticus_NCTC13773"]
["ID","CP046629.1","CP013689.1","CP017092.1","LR134274.1","LN831051.1","CP003295.1","CP014326.1","CP012646.1","HE613569.1","LS483409.1"]
["Gene 1315",0,0,0,1,0,0,0,0,0,0]
["Gene 1327",0,0,0,1,0,0,0,0,0,0]
["Gene 1344",0,0,0,1,1,0,1,0,1,1]
["Gene 1352",0,0,0,0,0,0,0,0,1,0]
["Gene 1361",1,1,0,1,0,1,0,0,1,1]
["Gene 1392",0,0,0,1,1,0,1,1,0,0]
["Gene 1395",0,0,0,0,0,0,0,0,0,0]
["Gene 1403",0,0,0,1,0,0,1,0,0,0]
["Gene 1404",0,0,0,1,0,1,0,0,0,0]
["Gene 1406",0,1,0,0,1,0,1,1,0,0]
["Gene 1407",1,0,0,1,0,0,1,0,0,0]
["Gene 1408",1,0,0,1,1,1,1,1,0,0]
["Gene 1424",0,0,0,1,0,1,0,0,1,0]
["Gene 1425",1,1,1,1,1,1,1,1,1,1]
["Gene 1426",0,0,1,1,0,0,0,0,1,1]
["Gene 1427",1,1,1,1,1,1,1,1,1,1]
["Gene 1432",0,0,0,1,0,0,0,0,0,0]
["Gene 1435",1,1,1,1,1,1,1,1,1,1]
["Gene 1438",0,0,0,1,0,0,0,0,0,0]
["Gene 1439",1,1,0,1,1,1,1,1,1,1]
["Gene 1440",0,0,0,1,0,0,0,0,0,0]
["Gene 1442",1,0,0,1,0,0,0,0,0,1]
["Gene 1448",0,0,1,0,0,1,1,1,1,0]
["Gene 1450",0,0,1,1,1,1,1,1,1,1]
["Gene 1454",1,1,0,1,0,1,0,0,1,1]
["Gene 1463",0,0,0,1,0,0,0,0,0,0]
["Gene 1466",0,0,0,1,1,0,1,1,0,0]
["Gene 1472",0,0,0,1,0,0,0,0,0,0]
["Gene 1476",0,0,0,0,0,0,0,0,0,0]
["Gene 1480",0,0,0,1,0,0,0,0,0,0]
["Gene 1491",0,0,0,1,0,0,0,0,0,0]
["Gene 1495",1,1,0,1,0,1,0,0,1,1]
["Gene 1498",0,0,0,1,0,0,0,0,0,0]
["Gene 1508",0,0,0,1,0,0,0,0,0,0]
["Gene 1510",0,1,0,0,0,1,0,0,1,1]
["Gene 1512",0,0,0,1,0,0,0,0,0,0]
["Gene 1514",0,0,0,1,0,0,0,0,0,0]
["Gene 1515",0,0,0,1,0,0,0,0,0,0]
["Gene 1516",0,0,0,1,0,1,0,0,0,0]
["Gene 1518",0,0,0,1,0,0,0,0,0,0]
["Gene 1521",0,0,0,0,0,0,0,0,0,0]
["Gene 1525",0,0,0,1,0,0,0,0,0,0]
["Gene 1530",0,0,0,1,0,1,0,0,0,1]
["Gene 1531",0,0,0,0,0,0,0,0,0,0]
["Gene 1535",0,0,0,0,0,0,0,0,0,0]
["Gene 1537",0,0,0,0,0,0,0,0,0,0]
["Gene 1538",0,0,0,1,1,0,1,1,0,0]
["Gene 1539",1,1,1,1,1,1,1,1,1,1]
["Gene 1540",0,0,0,0,0,0,0,0,0,0]
["Gene 1541",1,0,0,0,0,1,0,0,1,0]
["Gene 1542",1,1,1,1,0,1,0,0,1,1]
["Gene 1544",0,0,0,1,0,0,1,1,0,0]
["Gene 1545",0,0,0,0,0,0,0,0,0,0]
["Gene 1546",0,1,0,1,1,1,1,1,0,0]
["Gene 1547",0,0,0,0,0,0,0,0,0,0]
["Gene 1549",0,0,0,1,1,0,0,1,1,1]
["Gene 1552",1,1,0,1,0,1,0,1,0,0]
["Gene 1553",0,0,0,0,0,0,0,0,0,0]
["Gene 1554",0,0,0,0,0,0,0,0,0,0]
["Gene 1556",0,0,0,0,0,0,0,0,0,0]
["Gene 1560",0,0,0,0,0,0,0,0,0,0]
["Gene 1564",0,0,1,1,1,0,1,1,0,0]
["Gene 1565",0,1,0,0,0,0,0,0,0,1]
["Gene 1567",0,0,0,0,0,0,0,0,0,0]
["Gene 1568",0,0,0,1,0,0,0,0,0,0]
["Gene 1569",0,0,0,1,0,0,0,0,0,0]
["Gene 1570",0,0,0,0,0,1,0,0,0,1]
["Gene 1574",0,0,0,0,0,0,0,0,0,0]
["Gene 1575",0,0,0,1,0,0,0,0,0,0]
["Gene 1577",1,1,0,1,0,1,0,0,1,1]
["Gene 1580",0,0,0,0,0,1,0,0,0,1]
["Gene 1582",0,0,0,1,0,0,0,0,0,0]
["Gene 1585",1,0,0,0,0,0,1,0,0,0]
["Gene 1586",1,1,1,1,0,1,1,1,1,0]
["Gene 1588",0,1,0,0,0,1,0,0,1,1]
["Gene 1591",0,0,0,0,0,0,0,0,0,0]
["Gene 1592",0,0,0,1,0,0,0,0,0,0]
["Gene 1597",0,0,0,1,1,0,1,1,0,0]
["Gene 1598",0,0,0,0,0,0,0,0,0,0]
["Gene 1599",0,0,0,0,0,1,0,0,0,0]
["Gene 1600",0,0,0,0,0,0,0,0,1,1]
["Gene 1607",0,0,0,1,0,0,1,1,0,0]
["Gene 1610",0,0,0,0,0,0,0,0,0,0]
["Gene 1616",0,0,0,1,0,0,0,1,0,0]
["Gene 1622",0,0,0,1,0,0,0,0,0,0]
["Gene 1625",0,0,1,0,0,0,0,1,0,0]
["Gene 1627",0,0,0,0,0,0,0,0,0,0]
["Gene 1628",0,1,0,1,0,1,0,0,0,1]
["Gene 1637",1,1,1,1,1,0,1,1,1,1]
["Gene 1639",0,0,0,1,0,0,1,0,0,0]
["Gene 1641",0,0,0,1,1,0,1,1,0,0]
["Gene 1642",0,0,0,1,0,0,0,0,0,0]
["Gene 1644",0,0,0,1,0,0,0,0,0,0]
["Gene 1646",0,0,0,1,0,0,1,0,0,0]
["Gene 1647",0,0,0,1,1,0,1,0,0,0]
["Gene 1651",0,1,0,1,0,0,0,0,1,1]
["Gene 1654",0,0,0,0,1,0,0,1,0,0]
["Gene 1658",1,0,0,1,0,1,0,0,0,1]
["Gene 1661",0,0,0,0,0,1,0,0,0,1]
["Gene 1662",1,1,1,1,1,1,1,1,1,1]
["Gene 1673",0,0,0,1,0,0,0,0,0,0]
["Gene 1680",0,0,0,1,1,0,1,0,0,0]
["Gene 1694",1,1,0,0,0,1,0,0,1,1]
["Gene 1707",0,0,0,0,0,0,1,0,0,0]
["Gene 1714",1,1,1,1,1,1,1,1,1,1]
["Gene 1717",0,0,0,1,0,0,0,0,0,0]
["Gene 1719",0,0,0,0,0,0,0,1,0,0]
["Gene 1730",1,1,1,1,1,1,1,1,1,1]
["Gene 1742",1,1,1,1,0,1,1,1,1,1]
["Gene 1749",0,0,0,0,0,0,0,0,0,0]
["Gene 1752",1,1,1,1,1,1,1,1,1,1]
["Gene 1753",0,0,0,0,0,0,0,0,0,0]
["Gene 1756",0,0,0,0,0,0,0,0,0,0]
["Gene 1761",1,1,0,1,0,1,0,0,1,1]
["Gene 1775",0,0,0,0,0,0,0,0,0,0]
["Gene 1781",0,0,0,1,0,0,0,0,0,0]
["Gene 1783",0,0,1,0,1,0,0,0,1,0]
["Gene 1785",0,0,0,0,0,0,0,0,0,0]
["Gene 1786",0,0,0,0,0,0,1,0,0,0]
["Gene 1787",0,0,1,0,1,0,1,1,0,0]
["Gene 1788",1,0,0,0,1,1,1,1,1,1]
["Gene 1789",0,0,0,0,0,0,0,0,0,0]
["Gene 1790",0,0,1,0,0,0,0,0,0,0]
["Gene 1791",0,0,1,0,0,0,0,0,1,0]
["Gene 1792",0,0,1,0,1,0,0,0,0,0]
["Gene 1801",0,0,1,0,0,0,0,0,0,0]
["Gene 1805",1,1,0,1,1,0,1,1,0,0]
["Gene 1806",0,0,0,0,0,1,0,0,0,0]
["Gene 1807",0,0,0,0,0,0,0,0,0,0]
["Gene 1808",0,0,0,0,0,1,0,0,0,0]
["Gene 1810",0,0,0,0,0,0,0,0,0,0]

{"sheet":"Blp reference sequences","index":3,"n_rows":14,"n_cols":2,"rows_kept":14,"merged":[[0,0,0,1]],"flags":["formulas_cached_only"]}
["Reference sequences for Blp proteins."]
["Name","ID"]
["BlpA","AEM97911.1"]
["BlpB","AEM97910.1"]
["BlpI","AEM97912.1"]
["BlpJ","AEM97915.1"]
["BlpK","AEM97916.1"]
["BlpL","AEM97918.1"]
["BlpM","AEM97922.1"]
["BlpN","AEM97923.1"]
["BlpO","AEM97925.1"]
["BlpP","AEM97924.1"]
["BlpR","AEM97907.1"]
["BlpX","AEM97926.1"]