{"text_format":"3","workbook":"xlsx","n_sheets":6,"sheets":["genotype list","significant SNPs 2019","Significant SNPs 2020","Significant DArT marker 2019","Significant DArT markers 2020","R2 bet sig.DArT&SNPs"],"read":"whole","date_system":"1900"}

{"sheet":"genotype list","index":0,"n_rows":105,"n_cols":4,"rows_kept":105}
["Supplementary table 1. list of the genotypes used in this study, country which they are belong to, USDA_ARS Iss and their sub-population"]
["Subpopulation","Genotype name","Country","USDA_ARS ID"]
["Pop 1","MISR1 ","Egypt"]
["Pop 1","SIDS12","Egypt"]
["Pop 1","SAKHA93","Egypt"]
["Pop 1","SAKHA94","Egypt"]
["Pop 1","Gimmeiza-07","Egypt"]
["Pop 1","GIMMIZA9","Egypt"]
["Pop 1","GIMMIZA10","Egypt"]
["Pop 1","Gimmeiza-12","Egypt"]
["Pop 1","Shandweel-1","Egypt"]
["Pop 1","GIMMIZA11","Egypt"]
["Pop 1","SIDS13","Egypt"]
["Pop 1","LMPG-6","Unknown"]
["Pop 1","Little Club","Unknown"]
["Pop 1","Debra-1","Unknown"]
["Pop 1",57,"Afghanistan","PI_134128"]
["Pop 1","Bindawarra","Australia","PI_464645"]
["Pop 1","Laura","Canada","PI_518648"]
["Pop 1","LRS-1F193","Canada","PI_552987"]
["Pop 1","78M-352-001-001","Canada","PI_556465"]
["Pop 1","Preston","Canada","Cltr_3328"]
["Pop 1","4453/31","Germany","PI_115838"]
["Pop 1","Janetzkie Somerwizen","Germany","PI_191600"]
["Pop 1","MG 27967","Greece","PI_469080"]
["Pop 1","MG 27973","Greece","PI_469085"]
["Pop 1","MG 27981","Greece","PI_469093"]
["Pop 1","IWA8606158","Iran","PI_623509"]
["Pop 1","Pirotriks 28","Kazakhstan","PI_438967"]
["Pop 1","Pavlodarskaja I","Kazakhstan","PI_438966"]
["Pop 1","Kzyl Bas","Kazakhstan","PI_393970"]
["Pop 1","Al'borubrum 50","Kazakhstan","PI_438961"]
["Pop 1","Grekum 105","Kazakhstan","PI_438962"]
["Pop 1","Karabalykskaya 92","Kazakhstan","PI_639458"]
["Pop 1","Equator KTI","Kenya","PI_191638"]
["Pop 1","Rhodesian Sabanero","Kenya","PI_230202"]
["Pop 1","Kenya Governor","Kenya","PI_237655"]
["Pop 1","Rhodesian Sabanero","Kenya","PI_237658"]
["Pop 1","R64","Kenya","PI_238391"]
["Pop 1",1372,"Morocco","PI_525434"]
["Pop 1",1116,"Morocco","PI_559967"]
["Pop 1",1254,"Morocco","PI_525318"]
["Pop 1",1127,"Morocco","PI_525280"]
["Pop 1",1130,"Morocco","PI_525282"]
["Pop 1","1004b","Morocco","PI_525211"]
["Pop 1",1137,"Morocco","PI_525283"]
["Pop 1","Boudahaika","Morocco","PI_410909"]
["Pop 1",1359,"Morocco","PI_525326"]
["Pop 1",36,"Saudi Arabia","PI_145723"]
["Pop 1",15039,"Saudi Arabia","PI_574347"]
["Pop 2","Line E","Unknown"]
["Pop 2","Morocco","Unknown"]
["Pop 2",26.528,"Afghanistan","Cltr_15314"]
["Pop 2",732,"Afghanistan","PI_366667"]
["Pop 2",756,"Afghanistan","PI_366685"]
["Pop 2","Bahri Sirhosha","Afghanistan","PI_347110"]
["Pop 2",419,"Afghanistan","PI_366566"]
["Pop 2",110,"Afghanistan","PI_220127"]
["Pop 2",13122,"Afghanistan","PI_212632"]
["Pop 2",4617,"Afghanistan","PI_135048"]
["Pop 2","Sudani","Algeria","PI_542675"]
["Pop 2","93-11-14-2-2","Canada","PI_630979"]
["Pop 2","ELS 6404-63-4","Ethiopia","Cltr_14607"]
["Pop 2","IWA8600064","Iran","PI_62309"]
["Pop 2","IWA8613474","Iran","PI_626260"]
["Pop 2",1668,"Iran","PI_222677"]
["Pop 2",null,"Iran","PI_202828"]
["Pop 2","IWA8610524","Iran","PI_625253"]
["Pop 2","IWA8608569","Iran","PI_624578"]
["Pop 2",15,"Iran","PI_381963"]
["Pop 2","Gandum","Iran","PI_137758"]
["Pop 2",5401,"Iran","PI_243679"]
["Pop 2","IWA8610827","Iran","PI_625330"]
["Pop 2","IWA8609175","Iran","PI_624934"]
["Pop 2","IWA8614379","Iran","PI_626588"]
["Pop 2","IWA8600037","Iran","PI_623086"]
["Pop 2","Meskren","Kazakhstan","PI_262667"]
["Pop 2","Krasnaja Zvezda","Kazakhstan","PI_372134"]
["Pop 2",1162,"Morocco","PI_525295"]
["Pop 2","1054a","Morocco","PI_525246"]
["Pop 2",1066,"Morocco","PI_525253"]
["Pop 2","1018b","Morocco","PI_525219"]
["Pop 2","1018d","Morocco","PI_525221"]
["Pop 2","Kule","Oman","PI_532249"]
["Pop 2","Mufsegha","Oman","PI_532255"]
["Pop 2","Kule","Oman","PI_532259"]
["Pop 2","Kule","Oman","PI_532260"]
["Pop 2","Musane","Oman","PI_532263"]
["Pop 2","Kule","Oman","PI_532269"]
["Pop 2","Musane","Oman","PI_532272"]
["Pop 2","Baladi","Saudi Arabia","Cltr_15140"]
["Pop 2","Maiah","Saudi Arabia","Cltr_15142"]
["Pop 2","6-month wheat","Saudi Arabia","PI_145718"]
["Pop 2","Gerbya","Saudi Arabia","PI_261822"]
["Pop 2",null,"Saudi Arabia","PI_343715"]
["Pop 2","Hmira","Tunisia","Cltr_15434"]
["Pop 3","Beni Swief-1","Egypt"]
["Pop 3","Beni Swief-4","Egypt"]
["Pop 3","Beni Swief-5","Egypt"]
["Pop 3","Beni Swief-7","Egypt"]
["Pop 3","Sohag-3","Egypt"]
["Pop 3","Sohag-5","Egypt"]
["Pop 3","Rusty","Unknown"]
["Pop 3","Svevo","Unknown"]
["Pop 3","Musane","Oman","PI_532264"]

{"sheet":"significant SNPs 2019","index":1,"n_rows":16,"n_cols":7,"rows_kept":16,"merged":[[0,0,0,11]]}
["Table 2. Genome-wide association study of stripe rust resistance using the general linear model + population structure (GLM + PC) for the 2019 experiment"]
["Marker","Chr","Pos","p value","R2","Target allele","allele effect"]
["S1A_12821365","1A",12821365,{"v":0.000593,"d":"5.93E-04"},17.843,"C",-33.626]
["S1B_135248461","1B",135248461,{"v":2.33E-4,"d":"2.33E-04"},13.062999999999999,"T",55.19369]
["S1B_135248462","1B",135248462,{"v":2.33E-4,"d":"2.33E-04"},13.062999999999999,"A",-55.194]
["S1B_457866340","1B",457866340,{"v":3.5E-4,"d":"3.50E-04"},12.081999999999999,"C",-39.238]
["S1B_458325630","1B",458325630,{"v":5.31E-4,"d":"5.31E-04"},10.257,"G",-34.764]
["S1B_558913575","1B",558913575,{"v":0.000558,"d":"5.58E-04"},11.073,"G",-40.9074]
["S2A_16067928","2A",16067928,{"v":0.000665,"d":"6.65E-04"},11.173,"G",-46.3561]
["S2A_16881495","2A",16881495,{"v":6.44e-05,"d":"6.44E-05"},14.186000000000002,"C",-55.174]
["S2A_9121999","2A",9121999,{"v":0.000856,"d":"8.56E-04"},23.236,"T",-37.42785]
["S4A_657492521","4A",657492521,{"v":0.000559,"d":"5.59E-04"},11.448,"G",-40.51136]
["S4A_658066117","4A",658066117,{"v":0.000942,"d":"9.42E-04"},11.33,"G",-41.55559]
["S4A_658402828","4A",658402828,{"v":5.13E-4,"d":"5.13E-04"},11.033,"A",-55.964]
["S5A_613703228","5A",613703228,{"v":0.000416,"d":"4.16E-04"},10.187,"A",-59.045]
["SUN_304227260","UN",304227260,{"v":0.000309,"d":"3.09E-04"},26.016000000000002,"A",-38.957]

{"sheet":"Significant SNPs 2020","index":2,"n_rows":58,"n_cols":7,"rows_kept":58,"merged":[[0,0,0,11]]}
["Table 3. Genome-wide association study of stripe rust resistance using the general linear model + population structure (GLM + PC) for the 2020 experiment"]
["Marker","Chr","Pos","p value","R2","Target allele","allele effect"]
["S1A_22661606","1A",22661606,{"v":0.000537,"d":"5.37E-04"},14.783,"A",-40.57]
["S1A_22661624","1A",22661624,{"v":0.000537,"d":"5.37E-04"},14.783,"G",-40.57]
["S1A_574845603","1A",574845603,{"v":0.000893,"d":"8.93E-04"},13.436,"C",-25.37]
["S1A_50776307","1A",50776307,{"v":0.000927,"d":"9.27E-04"},14.285,"T",-35.37]
["S1B_540187539","1B",540187539,{"v":0.000133,"d":"1.33E-04"},21.571,"G",-32.47]
["S1B_540187567","1B",540187567,{"v":0.000133,"d":"1.33E-04"},21.571,"A",-32.47]
["S1B_603604697","1B",603604697,{"v":0.000558,"d":"5.58E-04"},28.078999999999997,"G",-40.15]
["S1B_645623488","1B",645623488,{"v":9.19E-4,"d":"9.19E-04"},14.277999999999999,"G",-42.35]
["S1B_645623494","1B",645623494,{"v":9.19E-4,"d":"9.19E-04"},14.277999999999999,"G",-42.35]
["S1B_644598814","1B",644598814,{"v":0.000929,"d":"9.29E-04"},13.661999999999999,"C",-21.26]
["S1D_20702062","1D",20702062,{"v":0.000198,"d":"1.98E-04"},17.158,"T",-57.55]
["S2A_16067928","2A",16067928,{"v":6.4e-07,"d":"6.40E-07"},29.892999999999997,"G",-53.5]
["S2A_16881495","2A",16881495,{"v":0.000507,"d":"5.07E-04"},14.264,"C",-42.3]
["S2A_9121999","2A",9121999,{"v":0.000587,"d":"5.87E-04"},30.753000000000004,"T",-32.78]
["S2B_154485733","2B",154485733,{"v":9.28e-05,"d":"9.28E-05"},20.288,"G",-30.77]
["S2B_154485743","2B",154485743,{"v":9.28e-05,"d":"9.28E-05"},20.288,"G",-30.77]
["S2B_662373640","2B",662373640,{"v":0.00017,"d":"1.70E-04"},15.783,"T",-23.81]
["S2B_8311059","2B",8311059,{"v":0.000235,"d":"2.35E-04"},15.274,"T",-27.52]
["S2B_153706598","2B",153706598,{"v":0.000266,"d":"2.66E-04"},14.32,"A",-26.94]
["S2B_153706633","2B",153706633,{"v":0.000266,"d":"2.66E-04"},14.32,"A",-26.94]
["S2B_153241674","2B",153241674,{"v":0.000396,"d":"3.96E-04"},14.305000000000001,"G",-26.51]
["S2B_80121186","2B",80121186,{"v":0.000399,"d":"3.99E-04"},15.014,"A",-61.38]
["S2B_661452850","2B",661452850,{"v":0.000503,"d":"5.03E-04"},15.254999999999999,"C",-25.09]
["S3A_747926676","3A",747926676,{"v":8.31e-05,"d":"8.31E-05"},30.326999999999998,"C",-42.82]
["S3B_793373199","3B",793373199,{"v":0.000448,"d":"4.48E-04"},24.354,"C",-25.46]
["S4A_657492521","4A",657492521,{"v":1.67e-05,"d":"1.67E-05"},21.959999999999997,"G",-41.6]
["S4A_658402828","4A",658402828,{"v":4.55e-05,"d":"4.55E-05"},19.351,"A",-65.02]
["S4A_625246035","4A",625246035,{"v":2.13E-4,"d":"2.13E-04"},23.465,"G",-39.07]
["S4A_731401272","4A",731401272,{"v":4.75E-4,"d":"4.75E-04"},17.912,"C",-40.84]
["S4A_731401276","4A",731401276,{"v":4.75E-4,"d":"4.75E-04"},17.912,"G",-40.84]
["S4A_731401301","4A",731401301,{"v":4.75E-4,"d":"4.75E-04"},17.912,"G",-40.84]
["S4A_656757223","4A",656757223,{"v":0.000879,"d":"8.79E-04"},14.029,"C",-52.37]
["S4B_611852876","4B",611852876,{"v":0.000329,"d":"3.29E-04"},16.535,"A",-40.99]
["S4D_506405462","4D",506405462,{"v":0.000576,"d":"5.76E-04"},25.235000000000003,"A",-34.62]
["S5A_472767703","5A",472767703,{"v":4.17E-4,"d":"4.17E-04"},17.961,"G",-26.5]
["S5A_617920658","5A",617920658,{"v":7.36E-4,"d":"7.36E-04"},14.435,"G",29.77]
["S5A_631669688","5A",631669688,{"v":0.000975,"d":"9.75E-04"},14.24,"C",-22.4]
["S5B_707477391","5B",707477391,{"v":0.000351,"d":"3.51E-04"},13.904,"T",42.05]
["S6A_554844974","6A",554844974,{"v":0.000161,"d":"1.61E-04"},25.824,"A",-27.56]
["S6A_48510075","6A",48510075,{"v":3.39E-4,"d":"3.39E-04"},20.237,"A",-40.97]
["S6A_48510083","6A",48510083,{"v":3.39E-4,"d":"3.39E-04"},20.237,"A",-40.97]
["S6A_48510084","6A",48510084,{"v":3.39E-4,"d":"3.39E-04"},20.237,"T",-40.97]
["S6A_466665065","6A",466665065,{"v":0.000966,"d":"9.66E-04"},13.852999999999998,"T",-1.18]
["S6B_42318119","6B",42318119,{"v":0.000862,"d":"8.62E-04"},12.577,"G",-26.82]
["S6B_42318146","6B",42318146,{"v":0.000862,"d":"8.62E-04"},12.577,"T",-26.82]
["S6D_9054273","6D",9054273,{"v":0.00021,"d":"2.10E-04"},15.581,"C",-52.47]
["S7A_1713851","7A",1713851,{"v":4.26E-4,"d":"4.26E-04"},13.782,"C",-44.06]
["S7A_108215622","7A",108215622,{"v":0.000846,"d":"8.46E-04"},12.154,"C",-18.48]
["S7A_108215624","7A",108215624,{"v":0.000846,"d":"8.46E-04"},12.154,"A",-18.48]
["S7A_108215749","7A",108215749,{"v":0.000981,"d":"9.81E-04"},12.052,"A",-19.59]
["S7B_44874011","7B",44874011,{"v":0.000303,"d":"3.03E-04"},25.535000000000004,"G",-35.97]
["SUN_124647183","UN",124647183,{"v":1.27E-4,"d":"1.27E-04"},22.028,"C",-43.93]
["SUN_124647192","UN",124647192,{"v":1.44E-4,"d":"1.44E-04"},21.733,"G",-44.65]
["SUN_124647199","UN",124647199,{"v":1.44E-4,"d":"1.44E-04"},21.733,"G",-44.65]
["SUN_124647200","UN",124647200,{"v":1.44E-4,"d":"1.44E-04"},21.733,"G",-43.65]
["SUN_330460802","UN",330460802,{"v":0.000756,"d":"7.56E-04"},13.984,"G",40.59]

{"sheet":"Significant DArT marker 2019","index":3,"n_rows":15,"n_cols":6,"rows_kept":15,"merged":[[0,0,0,11]]}
["Table 4. significant DArT markers associated with stripe rust resistance in 2019 using single marker analysis (SMA)"]
["DArT marker","chromosome","P value","F value","R2","allele effect"]
["WPT-3921","3B",1.465577E-3,7.215406789,12.154,31.1]
["WPT-665480","1D",0.011178734,4.814081607,5.953,21]
["WPT-4676","1A",0.015436053,4.446116214,3.4290000000000003,13.4]
["WPT-0493","7D",0.016829547,6.01108819,8.233,27.7]
["WPT-8006","6A",0.024872154,3.908694618,10.545,24.5]
["WPT-0827","1A",0.028026021,3.775410766,2.719,-17.89]
["WPT-5857","4A",0.036344833,3.486893491,9.391,-22.56]
["WPT-0365","3B",0.037609416,3.449096756,5.3870000000000005,-18.87]
["WPT-8960","1D",0.042763031,4.265617093,5.986,-13.31]
["WPT-7619","2B",0.044908027,3.253722589,1.399,11.7]
["WPT-3132","2B",0.04541298,3.241440789,2.543,-12.13]
["WPT-743269","7D",0.046528963,3.214788962,0.146,0.38]
["WPT-6709","1A",0.048452271,3.170366163,{"v":0.0233,"d":"2.33E-02"},0.29]

{"sheet":"Significant DArT markers 2020","index":4,"n_rows":24,"n_cols":6,"rows_kept":24,"merged":[[0,0,0,10]]}
["Table 5. significant DArT markers associated with stripe rust resistance in 2020 using single marker analysis (SMA)"]
["DArT marker","chromosome","P value","F value","R2","allele effect"]
["WPT-665480","UN",0.000625074,8.400992408,10.225,19.5]
["WPT-2206","1D",5.258591E-3,8.400547954,10.684000000000001,16.9]
["WPT-8015","6B",5.858032E-3,5.623588433,0.271,-2.42]
["WPT-377500","UN",0.006161712,5.563299237,0.28600000000000003,2.67]
["WPT-5168","5B",0.010181866,4.969848141,12.772,21.9]
["WPT-7614","3B",0.015025285,4.517080322,7.298,-15.39]
["WPT-665330","2A",0.015962386,4.447228909,11.606,18]
["WPT-8449","5B",0.021609367,4.099705854,8.502,-14.65]
["WPT-8059","6B",0.023600977,5.400006507,8.999,-18.67]
["TPT-8937","2A",0.025664359,5.240354698,9.64,16.3]
["WPT-5857","4A",0.027225299,3.837074463,15.751999999999999,-19.94]
["WPT-0694","2B",0.032279031,4.808258218,7.377000000000001,-13.89]
["WPT-1655","3A",0.036423149,4.583523026,7.231,-14.14]
["WPT-0493","7D",0.037292726,4.539862257,6.824,17.3]
["WPT-1353","3A",0.037950351,3.463142374,5.559,-12.17]
["WPT-667485","2A",0.040574259,3.388389732,9.472999999999999,16.8]
["WPT-8460","2B",0.043050501,3.322295575,2.5069999999999997,-8.12]
["TPT-6495","5A",0.043931371,3.299728242,0.107,1.68]
["WPT-5172","4A",0.043955145,3.299125683,2.403,7.18]
["WPT-0231","7D",0.044892615,3.275629798,3.963,10.1]
["WPT-665036","6A",0.049305771,3.171439169,11.4,19.5]
["WPT-5514","5B",0.049698294,3.162643732,9.685,-16.57]

{"sheet":"R2 bet sig.DArT&SNPs","index":5,"n_rows":15,"n_cols":3,"rows_kept":15}
["Table 6. Linkage disequilibrium between the significant SNPs and DArT markers on chromosomes 2A and 4A"]
[]
[null,"S2A_9121999","S2A_16067928"]
["S2A_9121999"]
["S2A_16067928",{"v":0.06844729,"d":"0.07"}]
["S2A_16881495",{"v":0.14666666,"d":"0.15"},{"v":0.6467662,"d":"0.65"}]
[]
[]
[]
[]
[]
[null,"WPT-5857","S4A_657492521"]
["WPT-5857"]
["S4A_657492521",0.2723112]
["S4A_658402828",0.06349207,0.5053476]