{"text_format":"3","workbook":"xlsx","n_sheets":5,"sheets":["DMRs annotation","DMRs of hyper annotation","DMRs of hypo annotation","Genes of hypo DMRs ","Genes of hyper DMRs"],"read":"whole","date_system":"1900"}

{"sheet":"DMRs annotation","index":0,"n_rows":20006,"n_cols":14,"rows_kept":4500,"cut":true,"merged":[[0,0,0,6]],"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Table S3a. DMR of all results annotation between OICD and OIBP."]
["#chr","start","end","length","nCG","OIACD_meanMethy","OIBP_meanMethy","diff.Methy","areaStat","C_context","regionID","region","gene_name","gene_description"]
[1,2542,2680,139,52,0.255850211306293,0.125184294788304,0.130665916517989,280.156714604283,"CHH","Os01g0100100","promoter","Os01g0100100","RabGAP/TBC domain containing protein && sp|Q94BY9|GAP22_ARATH Rab GTPase-activating protein 22 OS=Arabidopsis thaliana OX=3702 GN=RABGAP22 PE=1 SV=1 && PF00566:Rab-GTPase-TBC domain"]
[1,2542,2680,139,52,0.255850211306293,0.125184294788304,0.130665916517989,280.156714604283,"CHH","1:2054:4055","CGI_shore"]
[1,2819,2948,130,18,0.00959235652209096,0.145864459711724,-0.136272103189633,-162.413086995837,"CHH","Os01g0100100","promoter","Os01g0100100","RabGAP/TBC domain containing protein && sp|Q94BY9|GAP22_ARATH Rab GTPase-activating protein 22 OS=Arabidopsis thaliana OX=3702 GN=RABGAP22 PE=1 SV=1 && PF00566:Rab-GTPase-TBC domain"]
[1,2819,2948,130,18,0.00959235652209096,0.145864459711724,-0.136272103189633,-162.413086995837,"CHH","1:2054:4055","CGI_shore"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","Os01g0100400","promoter","Os01g0100400","Similar to Pectinesterase-like protein && sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana OX=3702 GN=SKU5 PE=1 SV=1 && PF00394:Multicopper oxidase|PF07732:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","Os01g0100200","utr5","Os01g0100200","Conserved hypothetical protein && sp|Q9LUC9|C7A11_ARATH Cytochrome P450 72A11 OS=Arabidopsis thaliana OX=3702 GN=CYP72A11 PE=2 SV=1 && -"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","Os01g0100200","exon","Os01g0100200","Conserved hypothetical protein && sp|Q9LUC9|C7A11_ARATH Cytochrome P450 72A11 OS=Arabidopsis thaliana OX=3702 GN=CYP72A11 PE=2 SV=1 && -"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","1:11221:13704","CGI"]
[1,22165,22416,252,79,0.165208146672248,0.0613621917240567,0.103845954948191,357.177939154014,"CHH","Os01g0100600","promoter","Os01g0100600","Single-stranded nucleic acid binding R3H domain containing protein && - && -"]
[1,69115,69187,73,19,0.115602032470265,0.00760933749496989,0.107992694975296,96.5014751133116,"CHH","1:67294:69295","CGI_shore"]
[1,69115,69187,73,19,0.115602032470265,0.00760933749496989,0.107992694975296,96.5014751133116,"CHH","1:68002:70002","CGI_shore"]
[1,173444,173499,56,25,0.116061892597592,0.0147082294080432,0.101353663189549,130.811261953088,"CHH","Os01g0103000","promoter","Os01g0103000","Snf7 family protein && sp|Q9LPN5|VP601_ARATH Vacuolar protein sorting-associated protein 60.1 OS=Arabidopsis thaliana OX=3702 GN=VPS60-1 PE=1 SV=1 && PF03357:Snf7"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","Os01g0103400","exon","Os01g0103400","Hypothetical gene && - && -"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","1:185439:185818","CGI"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","1:185505:187505","CGI_shore"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","Os01g0103650","promoter","Os01g0103650","Hypothetical gene && - && -"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","Os01g0103400","exon","Os01g0103400","Hypothetical gene && - && -"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","1:185439:185818","CGI"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","1:185505:187505","CGI_shore"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","Os01g0103650","promoter","Os01g0103650","Hypothetical gene && - && -"]
[1,221051,221201,151,44,0.167906490227492,0.0126567944199666,0.155249695807525,239.740661378245,"CHH","1:220923:222924","CGI_shore"]
[1,222082,222192,111,33,0.012633796080121,0.11881414031305,-0.106180344232929,-187.800517365231,"CHH","1:220923:222924","CGI_shore"]
[1,222082,222192,111,33,0.012633796080121,0.11881414031305,-0.106180344232929,-187.800517365231,"CHH","1:221310:223310","CGI_shore"]
[1,233866,234116,251,49,0.174839852078917,0.0136251043431265,0.161214747735791,281.256411249482,"CHH","1:231937:233937","CGI_shore"]
[1,233866,234116,251,49,0.174839852078917,0.0136251043431265,0.161214747735791,281.256411249482,"CHH","1:233938:234241","CGI"]
[1,233996,234093,98,9,0.686550908511524,0.330740237344949,0.355810671166575,43.6874080212882,"CHG","1:233938:234241","CGI"]
[1,234918,234996,79,37,0.0785914657721208,0.0150601582243943,0.0635313075477265,182.233249885963,"CHH","1:234241:236242","CGI_shore"]
[1,234918,234996,79,37,0.0785914657721208,0.0150601582243943,0.0635313075477265,182.233249885963,"CHH","1:234468:236468","CGI_shore"]
[1,238893,239121,229,39,0.268940318588894,0.0401372488624191,0.228803069726475,207.767647489904,"CHH","1:237597:239598","CGI_shore"]
[1,273736,273816,81,20,0.0571588896357017,0.00271036874511202,0.0544485208905897,95.7915148349985,"CHH","Os01g0104900","intron","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,273736,273816,81,20,0.0571588896357017,0.00271036874511202,0.0544485208905897,95.7915148349985,"CHH","1:272477:274477","CGI_shore"]
[1,273988,274069,82,18,0.0800917086964384,0.00744124156464687,0.0726504671317915,101.944228045055,"CHH","Os01g0104900","intron","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,273988,274069,82,18,0.0800917086964384,0.00744124156464687,0.0726504671317915,101.944228045055,"CHH","1:272477:274477","CGI_shore"]
[1,274480,274626,147,34,0.608680777980597,0.772423920606012,-0.163743142625416,-151.449113717664,"CG","Os01g0104900","intron","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,274480,274626,147,34,0.608680777980597,0.772423920606012,-0.163743142625416,-151.449113717664,"CG","1:274478:274949","CGI"]
[1,274480,274626,147,34,0.608680777980597,0.772423920606012,-0.163743142625416,-151.449113717664,"CG","Os01g0104900","exon","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,282933,283066,134,33,0.505565391294326,0.341198108598502,0.164367282695824,158.018954302559,"CHH","1:279995:284595","CGI"]
[1,301348,301446,99,16,0.308587129382061,0.166155997622432,0.142431131759628,102.632771195756,"CHH","Os01g0105700","promoter","basic helix-loop-helix protein 071","Basic helix-loop-helix dimerisation region bHLH domain containing protein && sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=2 && -"]
[1,314686,314802,117,46,0.151483582414344,0.0705569733902639,0.0809266090240797,221.377894584474,"CHH","1:313091:315091","CGI_shore"]
[1,314686,314802,117,46,0.151483582414344,0.0705569733902639,0.0809266090240797,221.377894584474,"CHH","Os01g0105900","promoter","Os01g0105900","Carbohydrate/purine kinase domain containing protein && sp|Q65D02|IOLC_BACLD 5-dehydro-2-deoxygluconokinase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=iolC PE=3 SV=1 && PF00294:pfkB family carbohydrate kinase"]
[1,314686,314802,117,46,0.151483582414344,0.0705569733902639,0.0809266090240797,221.377894584474,"CHH","1:314109:316110","CGI_shore"]
[1,317390,317478,89,29,0.500546240735871,0.262344220381771,0.2382020203541,133.339101574658,"CHH","1:315610:317611","CGI_shore"]
[1,351579,351719,141,26,0.312672636133941,0.0199707031201978,0.292701933013743,189.03190017824,"CHH","Os01g0106700","intron","Os01g0106700","Hypothetical conserved gene && sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana OX=3702 GN=ATM PE=1 SV=1 && PF00454:Phosphatidylinositol 3- and 4-kinase|PF02260:FATC domain"]
[1,390878,391060,183,46,0.150102296108656,0.0697187891558508,0.0803835069528054,218.205344749616,"CHH","1:390554:392555","CGI_shore"]
[1,457846,457951,106,23,0.27736287848244,0.150420338604066,0.126942539878374,110.045404397436,"CHH","1:455869:457870","CGI_shore"]
[1,457846,457951,106,23,0.27736287848244,0.150420338604066,0.126942539878374,110.045404397436,"CHH","1:457072:459073","CGI_shore"]
[1,494549,494607,59,16,0.153852171168872,0.0457289368400138,0.108123234328859,103.347914972871,"CHH","1:493211:495212","CGI_shore"]
[1,494549,494607,59,16,0.153852171168872,0.0457289368400138,0.108123234328859,103.347914972871,"CHH","1:493360:495360","CGI_shore"]
[1,688616,688735,120,20,0.12764997746498,0.00987850536246297,0.117771472102517,124.907446949911,"CHH","Os01g0112800","promoter","Os01g0112800","Disease resistance protein domain containing protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && -"]
[1,688616,688735,120,20,0.12764997746498,0.00987850536246297,0.117771472102517,124.907446949911,"CHH","1:687809:689809","CGI_shore"]
[1,716453,716618,166,57,0.265340528641049,0.130624735456724,0.134715793184325,313.927286842402,"CHH","1:715992:716648","CGI"]
[1,727678,727748,71,18,0.0497868113071525,0.148994188360157,-0.099207377053005,-91.9659231808869,"CHH","Os01g0113325","promoter","Os01g0113325","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,727678,727748,71,18,0.0497868113071525,0.148994188360157,-0.099207377053005,-91.9659231808869,"CHH","Os01g0113350","promoter","Os01g0113350","Hypothetical conserved gene && sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana OX=3702 GN=SD25 PE=1 SV=1 && PF00314:Thaumatin family|PF00069:Protein kinase domain"]
[1,727678,727748,71,18,0.0497868113071525,0.148994188360157,-0.099207377053005,-91.9659231808869,"CHH","1:727028:729028","CGI_shore"]
[1,779818,779902,85,23,0.370661659824147,0.220961106112228,0.149700553711919,111.859422066389,"CHH","1:778307:780308","CGI_shore"]
[1,779818,779902,85,23,0.370661659824147,0.220961106112228,0.149700553711919,111.859422066389,"CHH","1:779423:781424","CGI_shore"]
[1,800297,800373,77,33,0.117036112132625,0.0360937096145126,0.0809424025181119,176.079001806622,"CHH","1:796234:803076","CGI"]
[1,849417,849631,215,54,0.330291632795679,0.0434970175858164,0.286794615209863,416.426243908748,"CHH","1:849288:851289","CGI_shore"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116800","promoter","Os01g0116800","Similar to Receptor-like kinase && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && PF00069:Protein kinase domain"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116901","intron","Os01g0116901","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116901","exon","Os01g0116901","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116901","utr3","Os01g0116901","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116900","intron","Os01g0116900","Protein kinase, catalytic domain domain containing protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && PF00069:Protein kinase domain"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","1:1065312:1065534","CGI"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","1:1065534:1067535","CGI_shore"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","Target=(CTA)n:1-95;Class=Simple_repeat","repeat"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","1:1064701:1066701","CGI_shore"]
[1,1075575,1075829,255,53,0.43370091619015,0.250228682650124,0.183472233540025,282.510065571048,"CHH","1:1073655:1075656","CGI_shore"]
[1,1075575,1075829,255,53,0.43370091619015,0.250228682650124,0.183472233540025,282.510065571048,"CHH","Os01g0118700","promoter","Os01g0118700","Similar to HGA4 && sp|Q5Z8T8|XYXT1_ORYSJ Beta-1,2-xylosyltransferase XYXT1 OS=Oryza sativa subsp. japonica OX=39947 GN=XYXT1 PE=1 SV=1 && -"]
[1,1077307,1077450,144,43,0.197968305674021,0.0806971890161741,0.117271116657847,248.748136655057,"CHH","1:1076788:1078788","CGI_shore"]
[1,1077860,1078189,330,65,0.234766713423231,0.091672724270424,0.143093989152807,380.033242040271,"CHH","1:1076788:1078788","CGI_shore"]
[1,1086489,1086548,60,22,0.325945315330982,0.214334449386884,0.111610865944099,92.7046343384512,"CHH","1:1086420:1088421","CGI_shore"]
[1,1202086,1202189,104,20,0.42783138436091,0.649000241182256,-0.221168856821345,-108.675085386338,"CG","1:1200711:1202711","CGI_shore"]
[1,1202086,1202189,104,20,0.42783138436091,0.649000241182256,-0.221168856821345,-108.675085386338,"CG","Os01g0121400","exon","Os01g0121400","Hypothetical protein && - && -"]
[1,1202086,1202189,104,20,0.42783138436091,0.649000241182256,-0.221168856821345,-108.675085386338,"CG","Os01g0121300","exon","Os01g0121300","Conserved hypothetical protein && - && -"]
[1,1322730,1322891,162,48,0.459833026381564,0.242231019449043,0.217602006932521,275.607634022945,"CHH","1:1321770:1324511","CGI"]
[1,1343944,1344000,57,17,0.104637246990328,0.0240207418237227,0.0806165051666055,76.61054065234,"CHH","1:1342125:1344126","CGI_shore"]
[1,1343944,1344000,57,17,0.104637246990328,0.0240207418237227,0.0806165051666055,76.61054065234,"CHH","Os01g0124000","promoter","BOWMAN-BIRK INHIBITOR 2-1","Similar to Bowman Birk trypsin inhibitor && sp|A2WK50|IBBR_ORYSI Bowman-Birk type bran trypsin inhibitor OS=Oryza sativa subsp. indica OX=39946 GN=RBBI3.3 PE=2 SV=2 && PF00228:Bowman-Birk serine protease inhibitor family"]
[1,1343944,1344000,57,17,0.104637246990328,0.0240207418237227,0.0806165051666055,76.61054065234,"CHH","1:1343307:1345307","CGI_shore"]
[1,1431926,1432318,393,88,0.0798057052045968,0.0129929598215242,0.0668127453830726,431.581575990886,"CHH","Os01g0126100","promoter","LOW PHOSPHATE ROOT 1","Multicopper oxidas && sp|Q9AWU4|LPR1_ORYSJ Multicopper oxidase LPR1 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR1 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1431926,1432318,393,88,0.0798057052045968,0.0129929598215242,0.0668127453830726,431.581575990886,"CHH","1:1432085:1434085","CGI_shore"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","1:1495642:1497642","CGI_shore"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","Os01g0127200","TES","Low Phosphate Root5","Multicopper oxidase, Maintenance of Pi homeostasi && sp|A2ZNT5|LPR5_ORYSJ Multicopper oxidase LPR1 homolog 5 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR5 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","Os01g0127200","utr3","Low Phosphate Root5","Multicopper oxidase, Maintenance of Pi homeostasi && sp|A2ZNT5|LPR5_ORYSJ Multicopper oxidase LPR1 homolog 5 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR5 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","Os01g0127200","exon","Low Phosphate Root5","Multicopper oxidase, Maintenance of Pi homeostasi && sp|A2ZNT5|LPR5_ORYSJ Multicopper oxidase LPR1 homolog 5 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR5 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1610310,1610447,138,42,0.137200602159807,0.0503546579823491,0.0868459441774584,251.011308399441,"CHH","1:1609728:1611729","CGI_shore"]
[1,1633509,1633588,80,34,0.185953377127804,0.0654081393108321,0.120545237816972,189.803566318757,"CHH","1:1631740:1633741","CGI_shore"]
[1,1633509,1633588,80,34,0.185953377127804,0.0654081393108321,0.120545237816972,189.803566318757,"CHH","1:1632751:1634751","CGI_shore"]
[1,1664872,1665007,136,33,0.504383482498504,0.318554993097965,0.185828489400539,150.717463089656,"CG","1:1664573:1665173","CGI"]
[1,1687040,1687099,60,8,0.14811509280292,0.412684843639658,-0.264569750836738,-36.3805493405552,"CG","Os01g0130200","promoter","NRR","Hypothetical conserved gene && sp|Q5ZEF1|NRR_ORYSJ Protein NEGATIVE REGULATOR OF RESISTANCE OS=Oryza sativa subsp. japonica OX=39947 GN=NRR PE=1 SV=1 && -"]
[1,1687040,1687099,60,8,0.14811509280292,0.412684843639658,-0.264569750836738,-36.3805493405552,"CG","1:1685866:1687867","CGI_shore"]
[1,1720150,1720327,178,60,0.360122265361706,0.172576278446576,0.187545986915131,307.518393876069,"CHH","1:1719886:1721887","CGI_shore"]
[1,1724304,1724436,133,29,0.0114700341199364,0.084451564536775,-0.0729815304168386,-167.242126991018,"CHH","1:1723399:1725399","CGI_shore"]
[1,1759788,1759876,89,26,0.241093114042171,0.143693385610562,0.0973997284316094,124.14794110295,"CHH","Os01g0131900","promoter","Os01g0131900","Similar to Wound-induced protease inhibitor (WIP1) && sp|P31862|IBBWP_MAIZE Bowman-Birk type wound-induced proteinase inhibitor WIP1 OS=Zea mays OX=4577 GN=WIP1 PE=2 SV=1 && -"]
[1,1780132,1780255,124,46,0.347244298596532,0.227745887516939,0.119498411079593,203.293395338245,"CHH","Os01g0132500","promoter","Os01g0132500","Protein of unknown function DUF1639 domain containing protein && - && PF07797:Protein of unknown function (DUF1639)"]
[1,1780132,1780255,124,46,0.347244298596532,0.227745887516939,0.119498411079593,203.293395338245,"CHH","1:1769126:1782013","CGI"]
[1,1792123,1792179,57,14,0.230503504695938,0.0865889304658221,0.143914574230116,70.439422064161,"CHH","Os01g0132700","promoter","Mediator 22_1","Surfeit locus 5 family protein && sp|Q9SA42|MD22A_ARATH Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1 && PF06179:Surfeit locus protein 5 subunit 22 of Mediator complex"]
[1,1792123,1792179,57,14,0.230503504695938,0.0865889304658221,0.143914574230116,70.439422064161,"CHH","1:1791604:1793605","CGI_shore"]
[1,1817895,1817959,65,15,0.0868840148308875,0.02277993839773,0.0641040764331574,76.3113691363285,"CHH","1:1817112:1818615","CGI"]
[1,1817895,1817959,65,15,0.0868840148308875,0.02277993839773,0.0641040764331574,76.3113691363285,"CHH","Os01g0132800","promoter","Os01g0132800","Peptidyl-tRNA hydrolase family protein && sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0132800 PE=2 SV=1 && PF01195:Peptidyl-tRNA hydrolase"]
[1,1832339,1832399,61,16,0.32705137216525,0.137608089893514,0.189443282271737,85.0377026921272,"CHH","1:1830636:1832636","CGI_shore"]
[1,1832339,1832399,61,16,0.32705137216525,0.137608089893514,0.189443282271737,85.0377026921272,"CHH","Os01g0133100","promoter","Os01g0133100","Conserved hypothetical protein && - && -"]
[1,1925468,1925699,232,24,0.549019917351018,0.13428464395037,0.414735273400648,125.77401950666,"CHG","1:1902468:1934733","CGI"]
[1,1961496,1961570,75,15,0.16403193638127,0.0331947336996978,0.130837202681573,76.2008538108395,"CHH","1:1960467:1963787","CGI"]
[1,1961496,1961570,75,15,0.16403193638127,0.0331947336996978,0.130837202681573,76.2008538108395,"CHH","Os01g0136400","intron","WALL-ASSOCIATED KINASE GENE 1","Protein kinase, core domain containing protein && sp|P0C5E2|LRL12_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-1.2 PE=2 SV=3 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF14380:Wall-associated receptor kinase C-terminal|PF00069:Protein kinase domain"]
[1,1969777,1969827,51,10,0.132533570041618,0.370474454660688,-0.23794088461907,-45.1618800573937,"CHG","1:1966225:1978777","CGI"]
[1,1969777,1969827,51,10,0.132533570041618,0.370474454660688,-0.23794088461907,-45.1618800573937,"CHG","Os01g0136600","promoter","Os01g0136600","Conserved hypothetical protein && - && -"]
[1,1985730,1985827,98,16,0.140823937243205,0.0200116503558585,0.120812286887347,78.0838394258522,"CHG","1:1984815:1986815","CGI_shore"]
[1,1985730,1985827,98,16,0.140823937243205,0.0200116503558585,0.120812286887347,78.0838394258522,"CHG","1:1985008:1987009","CGI_shore"]
[1,1985730,1985827,98,16,0.140823937243205,0.0200116503558585,0.120812286887347,78.0838394258522,"CHG","Os01g0136900","exon","Os01g0136900","Similar to Stress-induced receptor-like kinase 2 && sp|F4HQ20|LRL25_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.5 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF07714:Protein tyrosine kinase|PF14380:Wall-associated receptor kinase C-terminal"]
[1,1987508,1987650,143,32,0.312117266579475,0.164293861480236,0.147823405099238,190.173855782689,"CHH","Os01g0137400","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 21","Protein kinase, catalytic domain domain containing protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[1,1987508,1987650,143,32,0.312117266579475,0.164293861480236,0.147823405099238,190.173855782689,"CHH","1:1986797:1988797","CGI_shore"]
[1,1987508,1987650,143,32,0.312117266579475,0.164293861480236,0.147823405099238,190.173855782689,"CHH","1:1987109:1989110","CGI_shore"]
[1,1990565,1990686,122,41,0.225446644036543,0.0913272359082591,0.134119408128284,231.730261757153,"CHH","1:1989345:1991346","CGI_shore"]
[1,1990565,1990686,122,41,0.225446644036543,0.0913272359082591,0.134119408128284,231.730261757153,"CHH","Os01g0137125","intron","Os01g0137125","Hypothetical protein && sp|D7SFH9|LRL26_ARATH Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.6 PE=1 SV=1 && -"]
[1,1990565,1990686,122,41,0.225446644036543,0.0913272359082591,0.134119408128284,231.730261757153,"CHH","Os01g0137400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 21","Protein kinase, catalytic domain domain containing protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","Os01g0137125","intron","Os01g0137125","Hypothetical protein && sp|D7SFH9|LRL26_ARATH Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.6 PE=1 SV=1 && -"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","Os01g0137200","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 20","Hypothetical conserved gene && - && PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","1:1991618:1993618","CGI_shore"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","1:1992867:1994867","CGI_shore"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","Os01g0137400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 21","Protein kinase, catalytic domain domain containing protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[1,2005015,2005085,71,25,0.754648101662031,0.605437334894608,0.149210766767423,118.221840766622,"CG","1:2003602:2011709","CGI"]
[1,2005015,2005085,71,25,0.754648101662031,0.605437334894608,0.149210766767423,118.221840766622,"CG","Os01g0137300","promoter","Os01g0137300","Hypothetical protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF00069:Protein kinase domain"]
[1,2006897,2007082,186,61,0.287975858593436,0.108292376706413,0.179683481887023,365.056808159031,"CHH","1:2003602:2011709","CGI"]
[1,2025140,2025227,88,16,0.300823418922148,0.0533267762151876,0.24749664270696,78.6205796572259,"CHH","1:2024825:2026826","CGI_shore"]
[1,2025140,2025227,88,16,0.300823418922148,0.0533267762151876,0.24749664270696,78.6205796572259,"CHH","Os01g0137700","exon","Os01g0137700","Conserved hypothetical protein && - && PF14380:Wall-associated receptor kinase C-terminal|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,2025140,2025227,88,16,0.300823418922148,0.0533267762151876,0.24749664270696,78.6205796572259,"CHH","Os01g0137700","utr3","Os01g0137700","Conserved hypothetical protein && - && PF14380:Wall-associated receptor kinase C-terminal|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,2043793,2043968,176,45,0.16301569452739,0.0121815551341515,0.150834139393239,253.67094922195,"CHH","Os01g0138000","promoter","Os01g0138000","Hypothetical protein && - && PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,2043793,2043968,176,45,0.16301569452739,0.0121815551341515,0.150834139393239,253.67094922195,"CHH","1:2038468:2059547","CGI"]
[1,2062986,2063042,57,26,0.0436654230614383,0.00928410853154959,0.0343813145298887,159.592068791292,"CHH","1:2061196:2063197","CGI_shore"]
[1,2062986,2063042,57,26,0.0436654230614383,0.00928410853154959,0.0343813145298887,159.592068791292,"CHH","1:2061955:2063956","CGI_shore"]
[1,2114332,2114417,86,35,0.231301727735255,0.133645669240782,0.0976560584944726,150.454887138148,"CHH","1:2112440:2114441","CGI_shore"]
[1,2152971,2153039,69,17,0.192865920920359,0.0800012146579348,0.112864706262425,79.3584579354242,"CHH","1:2151209:2153210","CGI_shore"]
[1,2152971,2153039,69,17,0.192865920920359,0.0800012146579348,0.112864706262425,79.3584579354242,"CHH","1:2152243:2154243","CGI_shore"]
[1,2152971,2153039,69,17,0.192865920920359,0.0800012146579348,0.112864706262425,79.3584579354242,"CHH","Os01g0140700","promoter","APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 77","Similar to RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor && sp|Q9AWS7|Y1407_ORYSJ Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0140700 PE=3 SV=1 && PF02362:B3 DNA binding domain|PF00847:AP2 domain"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","1:2225056:2227057","CGI_shore"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","1:2225836:2227837","CGI_shore"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141450","exon","Os01g0141450","Hypothetical gene && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && -"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141450","utr5","Os01g0141450","Hypothetical gene && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && -"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141300","exon","Os01g0141300","Similar to vacuolar sorting protein 4b && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && PF09336:Vps4 C terminal oligomerisation domain|PF00004:ATPase family associated with various cellular activities (AAA)|PF04212:MIT (microtubule interacting and transport) domain"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141300","intron","Os01g0141300","Similar to vacuolar sorting protein 4b && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && PF09336:Vps4 C terminal oligomerisation domain|PF00004:ATPase family associated with various cellular activities (AAA)|PF04212:MIT (microtubule interacting and transport) domain"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141450","intron","Os01g0141450","Hypothetical gene && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && -"]
[1,2286646,2286872,227,61,0.242076947563813,0.0562698283717215,0.185807119192091,561.500126097104,"CHH","Os01g0142500","promoter","Os01g0142500","Homeodomain-like containing protein && sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1 && PF00249:Myb-like DNA-binding domain"]
[1,2364321,2364422,102,9,0.60903617473789,0.819735872089852,-0.210699697351963,-53.6807846245065,"CHG","1:2361851:2364914","CGI"]
[1,2364321,2364422,102,9,0.60903617473789,0.819735872089852,-0.210699697351963,-53.6807846245065,"CHG","Os01g0143400","promoter","Os01g0143400","Protein of unknown function DUF594 domain containing protein && - && PF04578:Protein of unknown function, DUF594|PF13968:Domain of unknown function (DUF4220)"]
[1,2400139,2400313,175,46,0.120747936565179,0.0513391433402073,0.0694087932249721,222.59782053285,"CHH","1:2399499:2401360","CGI"]
[1,2471727,2471927,201,30,0.322646137198413,0.0337885032923692,0.288857633906044,213.025893726924,"CHH","1:2471567:2473568","CGI_shore"]
[1,2486540,2486728,189,44,0.537347358796355,0.301153414062139,0.236193944734216,287.246218125574,"CHH","1:2483964:2488701","CGI"]
[1,2486540,2486728,189,44,0.537347358796355,0.301153414062139,0.236193944734216,287.246218125574,"CHH","Os01g0146101","promoter","Os01g0146101","Conserved hypothetical protein && - && -"]
[1,2503461,2503668,208,38,0.353438088920982,0.160481035725661,0.192957053195322,188.281429182731,"CHH","1:2502241:2504242","CGI_shore"]
[1,2503461,2503668,208,38,0.353438088920982,0.160481035725661,0.192957053195322,188.281429182731,"CHH","1:2503415:2505415","CGI_shore"]
[1,2505296,2505464,169,38,0.247584927498766,0.0755394937015965,0.172045433797169,177.971600588027,"CHH","1:2503415:2505415","CGI_shore"]
[1,2505296,2505464,169,38,0.247584927498766,0.0755394937015965,0.172045433797169,177.971600588027,"CHH","1:2505416:2506040","CGI"]
[1,2523074,2523159,86,34,0.121295940102293,0.0354495739662427,0.0858463661360508,185.978046142197,"CHH","1:2521170:2523170","CGI_shore"]
[1,2523074,2523159,86,34,0.121295940102293,0.0354495739662427,0.0858463661360508,185.978046142197,"CHH","1:2521878:2523879","CGI_shore"]
[1,2539680,2539982,303,98,0.5065051984204,0.347063900191272,0.159441298229127,580.071226610653,"CHH","1:2538436:2540437","CGI_shore"]
[1,2549464,2549641,178,31,0.334565927090895,0.164402827384361,0.170163099706534,146.430838085105,"CHH","1:2546710:2551330","CGI"]
[1,2549464,2549641,178,31,0.334565927090895,0.164402827384361,0.170163099706534,146.430838085105,"CHH","Os01g0147001","promoter","Os01g0147001","Similar to H0212B02.9 protein && sp|B9FCV3|GT43_ORYSJ Probable glucuronosyltransferase Os04g0650300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0650300 PE=3 SV=1 && PF03360:Glycosyltransferase family 43"]
[1,2553190,2553374,185,56,0.370425952440436,0.2430808430087,0.127345109431736,254.045365701114,"CHH","1:2551330:2553331","CGI_shore"]
[1,2553190,2553374,185,56,0.370425952440436,0.2430808430087,0.127345109431736,254.045365701114,"CHH","1:2551670:2553670","CGI_shore"]
[1,2553190,2553374,185,56,0.370425952440436,0.2430808430087,0.127345109431736,254.045365701114,"CHH","1:2553246:2555246","CGI_shore"]
[1,2556981,2557141,161,47,0.070266683409054,0.0096001491882147,0.0606665342208393,232.931578357736,"CHH","1:2556389:2558354","CGI"]
[1,2556981,2557141,161,47,0.070266683409054,0.0096001491882147,0.0606665342208393,232.931578357736,"CHH","1:2555690:2557691","CGI_shore"]
[1,2674839,2674935,97,25,0.32857663242451,0.123094682079059,0.205481950345451,136.504010513386,"CG","1:2673984:2674917","CGI"]
[1,2674839,2674935,97,25,0.32857663242451,0.123094682079059,0.205481950345451,136.504010513386,"CG","Os01g0149350","promoter","Os01g0149350","NB-ARC domain containing protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && PF00931:NB-ARC domain|PF13855:Leucine rich repeat|PF18052:Rx N-terminal domain"]
[1,2674839,2674935,97,25,0.32857663242451,0.123094682079059,0.205481950345451,136.504010513386,"CG","1:2674917:2676918","CGI_shore"]
[1,2676029,2676143,115,30,0.0477511585150554,0.161771243674902,-0.114020085159847,-154.553656321276,"CHH","Os01g0149350","promoter","Os01g0149350","NB-ARC domain containing protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && PF00931:NB-ARC domain|PF13855:Leucine rich repeat|PF18052:Rx N-terminal domain"]
[1,2676029,2676143,115,30,0.0477511585150554,0.161771243674902,-0.114020085159847,-154.553656321276,"CHH","1:2674917:2676918","CGI_shore"]
[1,2702200,2702295,96,7,0.12781873549447,0.316349320293924,-0.188530584799454,-23.5156991423058,"CG","Os01g0149900","exon","Os01g0149900","Conserved hypothetical protein && - && PF14309:Domain of unknown function (DUF4378)"]
[1,2702200,2702295,96,7,0.12781873549447,0.316349320293924,-0.188530584799454,-23.5156991423058,"CG","Os01g0149900","intron","Os01g0149900","Conserved hypothetical protein && - && PF14309:Domain of unknown function (DUF4378)"]
[1,2702200,2702295,96,7,0.12781873549447,0.316349320293924,-0.188530584799454,-23.5156991423058,"CG","1:2702262:2704262","CGI_shore"]
[1,2726851,2726935,85,23,0.179135046089611,0.0630964862522194,0.116038559837392,145.752419238073,"CHH","Os01g0150500","promoter","Os01g0150500","Similar to 3-hydroxyacyl-CoA dehydratase PASTICCINO 2A && sp|Q7XSZ4|HACDA_ORYSJ Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2 && PF04387:Protein tyrosine phosphatase-like protein, PTPLA"]
[1,2726851,2726935,85,23,0.179135046089611,0.0630964862522194,0.116038559837392,145.752419238073,"CHH","1:2726490:2728491","CGI_shore"]
[1,2738383,2738464,82,16,0.124366472183567,0.0277100830846495,0.0966563890989179,89.7721816355318,"CHH","Os01g0150700","promoter","Os01g0150700","Hypothetical conserved gene && - && PF14223:gag-polypeptide of LTR copia-type"]
[1,2738383,2738464,82,16,0.124366472183567,0.0277100830846495,0.0966563890989179,89.7721816355318,"CHH","1:2731574:2739664","CGI"]
[1,2750172,2750239,68,16,0.1439180847285,0.014197999369698,0.129720085358802,90.6328298258402,"CHH","Os01g0150900","promoter","Os01g0150900","Conserved hypothetical protein && - && -"]
[1,2750172,2750239,68,16,0.1439180847285,0.014197999369698,0.129720085358802,90.6328298258402,"CHH","1:2750164:2752165","CGI_shore"]
[1,2822500,2822585,86,10,0.437071221055148,0.799135990728607,-0.362064769673459,-68.0745504774233,"CG","Os01g0152300","promoter","H2B.10","Similar to Histone H2B.1 && sp|Q9LGI2|H2B10_ORYSJ Histone H2B.10 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.10 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2822500,2822585,86,10,0.437071221055148,0.799135990728607,-0.362064769673459,-68.0745504774233,"CG","1:2820983:2822984","CGI_shore"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","1:2855928:2857929","CGI_shore"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","Os01g0153150","promoter","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","Os01g0153100","exon","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","1:2857620:2858346","CGI"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","Os01g0153100","utr5","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","1:2855928:2857929","CGI_shore"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","Os01g0153150","promoter","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","Os01g0153100","exon","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","1:2857620:2858346","CGI"]
[1,2858404,2858575,172,29,0.366138119715436,0.0661990680196335,0.299939051695802,159.098280648675,"CHH","Os01g0153150","promoter","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2858404,2858575,172,29,0.366138119715436,0.0661990680196335,0.299939051695802,159.098280648675,"CHH","Os01g0153100","promoter","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2858404,2858575,172,29,0.366138119715436,0.0661990680196335,0.299939051695802,159.098280648675,"CHH","1:2858346:2860347","CGI_shore"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","Os01g0153150","exon","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","1:2859975:2861975","CGI_shore"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","1:2861069:2861517","CGI"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","Os01g0153150","utr3","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","1:2861517:2863518","CGI_shore"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","Os01g0153150","exon","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","1:2859975:2861975","CGI_shore"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","1:2861069:2861517","CGI"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","Os01g0153150","utr3","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2877888,2878056,169,47,0.118340413098129,0.0420370864443415,0.0763033266537875,248.813475650093,"CHH","Os01g0153400","intron","Os01g0153400","Similar to tRNA synthetase class II (D, K and N) family protein && sp|F4JJT9|SYDM_ARATH Aspartate--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g33760 PE=2 SV=1 && PF00152:tRNA synthetases class II (D, K and N)|PF02938:GAD domain"]
[1,2981901,2982093,193,52,0.577854821244147,0.352666573488254,0.225188247755893,347.21400405791,"CHH","Os01g0155500","promoter","Catharanthus roseus receptor-like kinase1-like kinase 4","Protein kinase, catalytic domain domain containing protein && sp|Q9LX66|HERK_ARATH Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana OX=3702 GN=HERK1 PE=1 SV=1 && PF12819:Malectin-like domain|PF07714:Protein tyrosine kinase"]
[1,3131239,3131424,186,50,0.19836586419159,0.065402311878628,0.132963552312962,300.601925481777,"CHH","1:3131165:3133165","CGI_shore"]
[1,3131973,3132030,58,24,0.0807043640974297,0.019439804139027,0.0612645599584028,123.954681964741,"CHH","1:3131165:3133165","CGI_shore"]
[1,3180369,3180492,124,12,0.243797607360421,0.563207308512687,-0.319409701152266,-66.2769157820601,"CG","Os01g0160700","promoter","Os01g0160700","Leucine-rich repeat, N-terminal domain containing protein && sp|Q9C637|RLP6_ARATH Receptor-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=RLP6 PE=3 SV=1 && PF08263:Leucine rich repeat N-terminal domain"]
[1,3180369,3180492,124,12,0.243797607360421,0.563207308512687,-0.319409701152266,-66.2769157820601,"CG","1:3180228:3182228","CGI_shore"]
[1,3180775,3180906,132,27,0.118226768233137,0.0293751681537238,0.0888516000794136,131.846130641197,"CHH","Os01g0160700","promoter","Os01g0160700","Leucine-rich repeat, N-terminal domain containing protein && sp|Q9C637|RLP6_ARATH Receptor-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=RLP6 PE=3 SV=1 && PF08263:Leucine rich repeat N-terminal domain"]
[1,3180775,3180906,132,27,0.118226768233137,0.0293751681537238,0.0888516000794136,131.846130641197,"CHH","1:3180228:3182228","CGI_shore"]
[1,3202615,3202713,99,9,0.763517791634981,0.439700020825497,0.323817770809484,33.6424792602276,"CHG","1:3201485:3203486","CGI_shore"]
[1,3202615,3202713,99,9,0.763517791634981,0.439700020825497,0.323817770809484,33.6424792602276,"CHG","Os01g0161000","intron","Os01g0161000","Hypothetical conserved gene && - && PF08263:Leucine rich repeat N-terminal domain"]
[1,3227143,3227195,53,5,0.352241013024732,0.589823044736765,-0.237582031712032,-21.1869855441621,"CG","1:3226318:3228318","CGI_shore"]
[1,3227143,3227195,53,5,0.352241013024732,0.589823044736765,-0.237582031712032,-21.1869855441621,"CG","Os01g0161200","promoter","Os01g0161200","Hypothetical protein && sp|Q9C637|RLP6_ARATH Receptor-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=RLP6 PE=3 SV=1 && -"]
[1,3227143,3227195,53,5,0.352241013024732,0.589823044736765,-0.237582031712032,-21.1869855441621,"CG","1:3226766:3228767","CGI_shore"]
[1,3230173,3230496,324,96,0.135553821193653,0.0643485934251128,0.0712052277685404,442.796047306431,"CHH","1:3228521:3230522","CGI_shore"]
[1,3230173,3230496,324,96,0.135553821193653,0.0643485934251128,0.0712052277685404,442.796047306431,"CHH","1:3229634:3230183","CGI"]
[1,3230173,3230496,324,96,0.135553821193653,0.0643485934251128,0.0712052277685404,442.796047306431,"CHH","1:3230183:3232184","CGI_shore"]
[1,3237254,3237405,152,37,0.545913078696629,0.379194026859338,0.166719051837291,181.499663549419,"CHH","1:3235725:3237726","CGI_shore"]
[1,3237254,3237405,152,37,0.545913078696629,0.379194026859338,0.166719051837291,181.499663549419,"CHH","1:3236044:3238044","CGI_shore"]
[1,3245559,3245646,88,27,0.40524551052544,0.195901250707547,0.209344259817893,122.600603384186,"CHH","Os01g0162001","promoter","Os01g0162001","Hypothetical gene && - && -"]
[1,3245559,3245646,88,27,0.40524551052544,0.195901250707547,0.209344259817893,122.600603384186,"CHH","Os01g0162101","promoter","Os01g0162101","Similar to MATE && - && -"]
[1,3245559,3245646,88,27,0.40524551052544,0.195901250707547,0.209344259817893,122.600603384186,"CHH","1:3245448:3247449","CGI_shore"]
[1,3368826,3368929,104,30,0.233716627442521,0.138847557579018,0.0948690698635024,131.520481905195,"CHH","Os01g0165200","promoter","Os01g0165200","Kelch-type beta propeller domain containing protein && sp|Q5JZR1|NRPA_SOYBN DCD domain-containing protein NRP-A OS=Glycine max OX=3847 GN=NRP-A PE=2 SV=1 && PF01344:Kelch motif|PF10539:Development and cell death domain"]
[1,3368826,3368929,104,30,0.233716627442521,0.138847557579018,0.0948690698635024,131.520481905195,"CHH","1:3368473:3370474","CGI_shore"]
[1,3370265,3370320,56,18,0.070798464009583,0.0172747820077995,0.0535236820017835,79.7139773791188,"CHH","1:3368473:3370474","CGI_shore"]
[1,3372710,3372995,286,97,0.318510034558213,0.524056790913904,-0.205546756355691,-776.552027654235,"CG","1:3372709:3374295","CGI"]
[1,3372712,3372855,144,28,0.192116962092533,0.344305343207688,-0.152188381115155,-133.456416208283,"CHG","1:3372709:3374295","CGI"]
[1,3373308,3373498,191,57,0.153579685923545,0.26666686917229,-0.113087183248745,-305.474955102843,"CG","1:3372709:3374295","CGI"]
[1,3431420,3431515,96,15,0.226474691579103,0.0695305716668149,0.156944119912288,59.9935897238656,"CG","1:3429330:3431951","CGI"]
[1,3431420,3431515,96,15,0.226474691579103,0.0695305716668149,0.156944119912288,59.9935897238656,"CG","Os01g0166800","promoter","Os01g0166800","Similar to ETG1 (E2F TARGET GENE 1) && sp|Q501D5|MCMBP_ARATH Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana OX=3702 GN=ETG1 PE=1 SV=1 && PF09739:Mini-chromosome maintenance replisome factor"]
[1,3431420,3431515,96,15,0.226474691579103,0.0695305716668149,0.156944119912288,59.9935897238656,"CG","Os01g0167100","promoter","Os01g0167100","Hypothetical protein && sp|Q5MR23|9DC3_SOLPI Receptor-like protein 9DC3 OS=Solanum pimpinellifolium OX=4084 GN=9DC3 PE=3 SV=1 && -"]
[1,3436474,3436587,114,24,0.396863247250284,0.194269680047902,0.202593567202382,149.232330317882,"CHH","1:3435219:3437219","CGI_shore"]
[1,3436776,3436979,204,52,0.0629367451750573,0.258335189575392,-0.195398444400335,-354.218727752397,"CHH","1:3435219:3437219","CGI_shore"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3440745:3440991","CGI"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3438744:3440744","CGI_shore"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3439376:3441376","CGI_shore"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","ENSRNA049471191","promoter","MIR2907","microRNA MIR2907 && - && -"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3440089:3442090","CGI_shore"]
[1,3443765,3443960,196,47,0.168655540779205,0.0491251283702142,0.119530412408991,274.257619877859,"CHH","1:3442304:3444305","CGI_shore"]
[1,3443765,3443960,196,47,0.168655540779205,0.0491251283702142,0.119530412408991,274.257619877859,"CHH","Os01g0167400","promoter","Os01g0167400","Similar to Protein synthesis inhibitor II (EC 3.2.2.22) (Ribosome-inactivating protein II) (rRNA N-glycosidase) && sp|P04399|RIP2_HORVU Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 && PF00161:Ribosome inactivating protein"]
[1,3443765,3443960,196,47,0.168655540779205,0.0491251283702142,0.119530412408991,274.257619877859,"CHH","1:3443431:3445431","CGI_shore"]
[1,3462575,3462687,113,28,0.174312050072582,0.050540817370698,0.123771232701884,159.056207005777,"CHH","Os01g0167700","intron","Os01g0167700","Conserved hypothetical protein && - && -"]
[1,3462575,3462687,113,28,0.174312050072582,0.050540817370698,0.123771232701884,159.056207005777,"CHH","1:3462451:3464451","CGI_shore"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","1:3575938:3577938","CGI_shore"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","1:3575998:3577999","CGI_shore"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","Os01g0169800","utr3","FISH BONE, TRYPTOPHAN AMINOTRANSFERASE 2","Tryptophan aminotransferase, Indole-3-acetic acid (IAA) biosynthesi && sp|Q5VQG8|TAR2_ORYSJ Tryptophan aminotransferase-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR2 PE=1 SV=1 && PF04864:Allinase"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","Os01g0169800","exon","FISH BONE, TRYPTOPHAN AMINOTRANSFERASE 2","Tryptophan aminotransferase, Indole-3-acetic acid (IAA) biosynthesi && sp|Q5VQG8|TAR2_ORYSJ Tryptophan aminotransferase-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR2 PE=1 SV=1 && PF04864:Allinase"]
[1,3636157,3636487,331,101,0.368011614399037,0.157999184595252,0.210012429803785,646.821501577256,"CHH","1:3634209:3636210","CGI_shore"]
[1,3636157,3636487,331,101,0.368011614399037,0.157999184595252,0.210012429803785,646.821501577256,"CHH","Os01g0170500","intron","Os01g0170500","Protein of unknown function DUF239, plant domain containing protein && - && PF03080:Neprosin|PF14365:Neprosin activation peptide"]
[1,3636157,3636487,331,101,0.368011614399037,0.157999184595252,0.210012429803785,646.821501577256,"CHH","1:3636195:3638195","CGI_shore"]
[1,3657554,3657671,118,42,0.393096883259123,0.208362553229894,0.184734330029229,234.589521114768,"CG","1:3657325:3659324","CGI"]
[1,3674460,3674578,119,23,0.193396925970751,9.35274536736771E-3,0.184044180603383,138.290901601876,"CHH","Os01g0171000","promoter","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase, SERK-like gene 5, bri1-associated receptor kinase 1 (BAK1) homologue 4","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) && sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana OX=3702 GN=NIK3 PE=1 SV=1 && PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain|PF00069:Protein kinase domain"]
[1,3674460,3674578,119,23,0.193396925970751,9.35274536736771E-3,0.184044180603383,138.290901601876,"CHH","1:3673179:3675180","CGI_shore"]
[1,3694312,3694487,176,33,0.637032667349989,0.856400619470241,-0.219367952120252,-131.288104084831,"CG","1:3686885:3695949","CGI"]
[1,3793822,3793999,178,52,0.0661945916713325,0.19693727683481,-0.130742685163477,-252.971849274565,"CHH","1:3792672:3794673","CGI_shore"]
[1,3793822,3793999,178,52,0.0661945916713325,0.19693727683481,-0.130742685163477,-252.971849274565,"CHH","1:3792939:3794939","CGI_shore"]
[1,3793822,3793999,178,52,0.0661945916713325,0.19693727683481,-0.130742685163477,-252.971849274565,"CHH","1:3793448:3794599","CGI"]
[1,3837839,3838145,307,81,0.259153369422463,0.15951971290178,0.0996336565206827,372.210441797224,"CHH","Os01g0174700","promoter","OsPINOID-like","Similar to Akt (Fragment) && sp|Q94E49|PID2_ORYSJ Protein kinase PINOID 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PID2 PE=2 SV=1 && -"]
[1,3837839,3838145,307,81,0.259153369422463,0.15951971290178,0.0996336565206827,372.210441797224,"CHH","1:3837549:3839550","CGI_shore"]
[1,3956983,3957036,54,22,0.0905720234120469,0.0190613506922441,0.0715106727198028,160.183998237383,"CHH","1:3953070:3961889","CGI"]
[1,3956983,3957036,54,22,0.0905720234120469,0.0190613506922441,0.0715106727198028,160.183998237383,"CHH","Os01g0176800","promoter","Os01g0176800","Protein of unknown function DUF2921 domain containing protein && - && PF11145:Protein of unknown function (DUF2921)"]
[1,3993099,3993335,237,83,0.0131987138606761,0.10189316337095,-0.0886944495102736,-425.549135540885,"CHH","Os01g0177200","intron","Os01g0177200","Similar to Ubiquitin-specific protease 14 && sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana OX=3702 GN=UBP14 PE=1 SV=1 && PF02148:Zn-finger in ubiquitin-hydrolases and other protein|PF17807:Variant UBP zinc finger|PF00627:UBA/TS-N domain|PF00443:Ubiquitin carboxyl-terminal hydrolase"]
[1,4024099,4024208,110,36,0.0502595882213359,0.116476604392235,-0.0662170161708987,-142.033893801338,"CHH","1:4023438:4025439","CGI_shore"]
[1,4152956,4153008,53,20,0.0308790164633488,0.101320144530763,-0.0704411280674144,-102.067266891964,"CHH","1:4151195:4153195","CGI_shore"]
[1,4262214,4262333,120,32,0.166691667180776,0.0778097415549627,0.088881925625813,149.015656118692,"CHH","1:4261827:4263827","CGI_shore"]
[1,4262214,4262333,120,32,0.166691667180776,0.0778097415549627,0.088881925625813,149.015656118692,"CHH","Os01g0180900","promoter","Paternally Expressed Gene1","2-oxoglutarate and iron-dependent oxygenase, Starch accumulatio && sp|P0DO23|CP2_ARATH 2-oxoglutarate and iron-dependent oxygenase domain-containing protein CP2 OS=Arabidopsis thaliana OX=3702 GN=CP2 PE=1 SV=1 && -"]
[1,4303580,4303736,157,49,0.289456546456028,0.0836631817154921,0.205793364740536,249.584891720398,"CHH","1:4300955:4305062","CGI"]
[1,4345321,4345491,171,48,0.176335857079085,0.0498851675238601,0.126450689555225,233.01204906721,"CHH","1:4345408:4347408","CGI_shore"]
[1,4420303,4420358,56,15,0.43020717303868,0.243123002298388,0.187084170740292,100.243681704652,"CHH","Os01g0183600","promoter","P-450 96E1","Cytochrome P450 family protein && sp|Q9FVS9|C96AF_ARATH Alkane hydroxylase MAH1 OS=Arabidopsis thaliana OX=3702 GN=CYP96A15 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,4420303,4420358,56,15,0.43020717303868,0.243123002298388,0.187084170740292,100.243681704652,"CHH","1:4419402:4421402","CGI_shore"]
[1,4564014,4564189,176,43,0.296393482849268,0.128230460549145,0.168163022300123,224.815988597357,"CHH","1:4563530:4565530","CGI_shore"]
[1,4565125,4565232,108,21,0.232349273904757,0.096680646788807,0.13566862711595,120.555700922226,"CHH","1:4563530:4565530","CGI_shore"]
[1,4565125,4565232,108,21,0.232349273904757,0.096680646788807,0.13566862711595,120.555700922226,"CHH","Os01g0185900","promoter","WRKY GENE 107","Similar to WRKY 1 (Fragment) && sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana OX=3702 GN=WRKY72 PE=2 SV=1 && PF03106:WRKY DNA -binding domain"]
[1,4565125,4565232,108,21,0.232349273904757,0.096680646788807,0.13566862711595,120.555700922226,"CHH","1:4564386:4566386","CGI_shore"]
[1,4616130,4616262,133,31,0.125853509976829,0.0483526825869543,0.0775008273898745,127.938354098768,"CHH","1:4615658:4617659","CGI_shore"]
[1,4616130,4616262,133,31,0.125853509976829,0.0483526825869543,0.0775008273898745,127.938354098768,"CHH","1:4615800:4617800","CGI_shore"]
[1,4619888,4619948,61,11,0.439636602321193,0.213550628342678,0.226085973978515,82.6910608488739,"CHH","1:4618122:4620123","CGI_shore"]
[1,4653728,4653879,152,37,0.186154158426406,0.0350659744714407,0.151088183954965,179.718590866183,"CHH","1:4652156:4654156","CGI_shore"]
[1,4653728,4653879,152,37,0.186154158426406,0.0350659744714407,0.151088183954965,179.718590866183,"CHH","1:4652808:4654809","CGI_shore"]
[1,4691209,4691264,56,16,0.12121479359151,0.0216313093266541,0.0995834842648555,94.3735590753566,"CHH","Os01g0187500","intron","OsWD40-7","WD40 repeat domain containing protein && sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 && -"]
[1,4725231,4725311,81,19,0.140779110507878,0.0443292577995034,0.0964498527083746,106.242081688026,"CG","1:4724195:4725312","CGI"]
[1,4725231,4725311,81,19,0.140779110507878,0.0443292577995034,0.0964498527083746,106.242081688026,"CG","Os01g0188100","promoter","Os01g0188100","Isopenicillin N synthase family protein && sp|Q84MB6|DIOX2_ARATH Probable 2-oxoglutarate-dependent dioxygenase At3g50210 OS=Arabidopsis thaliana OX=3702 GN=At3g50210 PE=2 SV=1 && PF14226:non-haem dioxygenase in morphine synthesis N-terminal|PF03171:2OG-Fe(II) oxygenase superfamily"]
[1,4753230,4753477,248,82,0.360755930376049,0.179292656638085,0.181463273737964,601.695480641944,"CHH","1:4751517:4753517","CGI_shore"]
[1,4813604,4813703,100,31,0.251796710548536,0.136016511375563,0.115780199172973,145.51447641981,"CHH","1:4812323:4814324","CGI_shore"]
[1,4829880,4830144,265,59,0.288796573782226,0.134046234434171,0.154750339348055,338.487231865784,"CHH","1:4828567:4830568","CGI_shore"]
[1,4829880,4830144,265,59,0.288796573782226,0.134046234434171,0.154750339348055,338.487231865784,"CHH","1:4829406:4831407","CGI_shore"]
[1,4905141,4905191,51,12,0.603250143430751,0.361867548436196,0.241382594994555,68.5086843111911,"CHH","Os01g0191700","promoter","phosphofructokinase 1","Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein) && sp|Q94AA4|PFKA3_ARATH ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana OX=3702 GN=PFK3 PE=1 SV=1 && PF00365:Phosphofructokinase"]
[1,4905141,4905191,51,12,0.603250143430751,0.361867548436196,0.241382594994555,68.5086843111911,"CHH","1:4904448:4906044","CGI"]
[1,4907292,4907461,170,16,0.612052658440879,0.862205065647803,-0.250152407206923,-90.5019970056784,"CG","1:4906044:4908045","CGI_shore"]
[1,4907292,4907461,170,16,0.612052658440879,0.862205065647803,-0.250152407206923,-90.5019970056784,"CG","1:4906620:4908620","CGI_shore"]
[1,4907292,4907461,170,16,0.612052658440879,0.862205065647803,-0.250152407206923,-90.5019970056784,"CG","Os01g0191700","exon","phosphofructokinase 1","Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein) && sp|Q94AA4|PFKA3_ARATH ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana OX=3702 GN=PFK3 PE=1 SV=1 && PF00365:Phosphofructokinase"]
[1,4952160,4952279,120,31,0.49933879737539,0.340148163801491,0.1591906335739,136.507092358508,"CHH","1:4948541:4959059","CGI"]
[1,4952160,4952279,120,31,0.49933879737539,0.340148163801491,0.1591906335739,136.507092358508,"CHH","Os01g0192000","promoter","DELAY OF THE ONSET OF SENESCENCE","CCCH-type zinc finger protein, Negative regulator  for leaf senescenc && sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1 && -"]
[1,4959544,4959613,70,14,0.335195968436827,0.126548164346866,0.208647804089962,69.2800811050388,"CHH","1:4959059:4961060","CGI_shore"]
[1,4960542,4960708,167,43,0.211294115503282,0.10243886902723,0.108855246476053,235.612844198816,"CHH","1:4959059:4961060","CGI_shore"]
[1,4963081,4963164,84,17,0.333584657075747,0.147295482716706,0.186289174359041,107.68126626378,"CHH","1:4961208:4963208","CGI_shore"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193500","promoter","Os01g0193500","Conserved hypothetical protein && sp|Q9M0E1|FBL77_ARATH F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana OX=3702 GN=At4g29420 PE=2 SV=1 && -"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193700","promoter","Os01g0193700","Hypothetical protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && -"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","1:5020165:5022166","CGI_shore"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193600","exon","Os01g0193600","Methyltransferase small domain containing protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && PF05958:tRNA (Uracil-5-)-methyltransferase"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193600","utr3","Os01g0193600","Methyltransferase small domain containing protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && PF05958:tRNA (Uracil-5-)-methyltransferase"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193600","intron","Os01g0193600","Methyltransferase small domain containing protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && PF05958:tRNA (Uracil-5-)-methyltransferase"]
[1,5136113,5136321,209,44,0.214346655980254,0.422225893670447,-0.207879237690193,-296.424287330262,"CHH","1:5135575:5137575","CGI_shore"]
[1,5143811,5143895,85,13,0.307893715818603,0.586381609538392,-0.278487893719789,-76.3550698642273,"CHG","1:5143626:5144552","CGI"]
[1,5143811,5143895,85,13,0.307893715818603,0.586381609538392,-0.278487893719789,-76.3550698642273,"CHG","1:5143198:5145198","CGI_shore"]
[1,5176420,5176525,106,53,0.150217532758506,0.0338577361025182,0.116359796655988,298.493242923461,"CHH","1:5175122:5177123","CGI_shore"]
[1,5176420,5176525,106,53,0.150217532758506,0.0338577361025182,0.116359796655988,298.493242923461,"CHH","1:5176418:5178419","CGI_shore"]
[1,5206353,5206432,80,18,0.163297365208874,0.0423276704474756,0.120969694761399,96.3857910159609,"CHH","1:5206198:5208199","CGI_shore"]
[1,5213121,5213381,261,66,0.210144159597741,0.442110373705146,-0.231966214107406,-354.042778317897,"CG","1:5212972:5213381","CGI"]
[1,5340294,5340404,111,32,0.170271790756622,0.00817055257132884,0.162101238185293,166.476768120474,"CHH","1:5339721:5341722","CGI_shore"]
[1,5376871,5376930,60,4,0.389396892662999,0.629970509454972,-0.240573616791972,-23.5321777299372,"CG","1:5376376:5378376","CGI_shore"]
[1,5377602,5377729,128,33,0.165733797681688,0.0373663798097565,0.128367417871931,170.181080251634,"CHH","1:5376376:5378376","CGI_shore"]
[1,5381815,5381903,89,25,0.16419081822938,0.0129988332428067,0.151191984986574,116.723655347637,"CHH","1:5378377:5388122","CGI"]
[1,5386585,5386713,129,37,0.0117794032485388,0.0979511780348864,-0.0861717747863476,-186.709714156001,"CHH","1:5378377:5388122","CGI"]
[1,5388237,5388301,65,16,0.250288669830242,0.0304577661758164,0.219830903654425,74.6476199401188,"CHH","1:5388122:5390123","CGI_shore"]
[1,5422040,5422114,75,15,0.36937142879775,0.0117876816620229,0.357583747135727,83.9208513682919,"CHH","Os01g0200200","promoter","Os01g0200200","Protein of unknown function DUF1677, plant domain containing protein && - && PF07911:Protein of unknown function (DUF1677)"]
[1,5422040,5422114,75,15,0.36937142879775,0.0117876816620229,0.357583747135727,83.9208513682919,"CHH","1:5422086:5424086","CGI_shore"]
[1,5479093,5479202,110,18,0.194822665952359,0.047513577236453,0.147309088715906,101.327299956137,"CHH","Os01g0200700","intron","METALLOTHIONEIN I-3A","Similar to Metallothionein-like protein type 3 (MT-3) (MWMT3) && sp|A2WLS0|MT3A_ORYSI Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A PE=3 SV=1 && -"]
[1,5479093,5479202,110,18,0.194822665952359,0.047513577236453,0.147309088715906,101.327299956137,"CHH","1:5478982:5480982","CGI_shore"]
[1,5494905,5495004,100,14,0.0411194794408025,0.182104927004511,-0.140985447563709,-64.7080944520405,"CHG","1:5493740:5495741","CGI_shore"]
[1,5569760,5569925,166,40,0.0618116633299947,0.265355440246382,-0.203543776916387,-299.173906530864,"CG","1:5568366:5570367","CGI_shore"]
[1,5569760,5569925,166,40,0.0618116633299947,0.265355440246382,-0.203543776916387,-299.173906530864,"CG","Os01g0201700","promoter","RICE AGAMOUS","Similar to M23 protein (Fragment) && sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS3 PE=2 SV=1 && -"]
[1,5575511,5575720,210,46,0.128379272802353,0.0055316367646105,0.122847636037742,220.185844855148,"CHH","1:5574682:5576683","CGI_shore"]
[1,5597153,5597329,177,59,0.221520017512609,0.119574598337835,0.101945419174774,282.188131934417,"CHH","Os01g0201900","promoter","NOD26 LIKE INTRINSIC PROTEIN 1;5","Conserved hypothetical protein && - && -"]
[1,5597153,5597329,177,59,0.221520017512609,0.119574598337835,0.101945419174774,282.188131934417,"CHH","1:5596314:5598314","CGI_shore"]
[1,5608722,5608849,128,46,0.186382059863808,0.0896969709262393,0.0966850889375689,195.792529928313,"CHH","1:5608632:5610633","CGI_shore"]
[1,5693658,5693812,155,65,0.130673455226143,0.0336034587394305,0.0970699964867129,404.72777270202,"CHH","1:5692774:5694774","CGI_shore"]
[1,5696027,5696153,127,25,0.190137299015262,0.0517291470148156,0.138408152000446,151.551955740333,"CHH","1:5695740:5697741","CGI_shore"]
[1,5711124,5711230,107,31,0.144944255503849,0.0429476809915157,0.101996574512333,169.730975348164,"CHH","1:5710212:5712213","CGI_shore"]
[1,5749862,5750159,298,100,0.153808456981021,0.045742396374739,0.108066060606282,513.16837633883,"CHH","1:5748941:5751546","CGI"]
[1,5752580,5752858,279,73,0.15208995517807,0.0437232121252004,0.10836674305287,402.247692370635,"CHH","1:5751546:5753547","CGI_shore"]
[1,5758743,5758811,69,10,0.293248435558552,0.477056969123251,-0.183808533564699,-45.1436731503993,"CHG","1:5757914:5759914","CGI_shore"]
[1,5758743,5758811,69,10,0.293248435558552,0.477056969123251,-0.183808533564699,-45.1436731503993,"CHG","Os01g0205100","promoter","OsWD40-8","WD40 repeat-like domain containing protein && - && -"]
[1,5807725,5807782,58,18,0.0933045079068038,0.28408121268281,-0.190776704776007,-165.994212986922,"CHH","Os01g0206600","promoter","Os01g0206600","Conserved hypothetical protein && - && -"]
[1,5807725,5807782,58,18,0.0933045079068038,0.28408121268281,-0.190776704776007,-165.994212986922,"CHH","Os01g0206650","promoter","Os01g0206650","Hypothetical protein && sp|Q9LWM4|CIPK5_ORYSJ CBL-interacting protein kinase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF03822:NAF domain"]
[1,5807725,5807782,58,18,0.0933045079068038,0.28408121268281,-0.190776704776007,-165.994212986922,"CHH","1:5788713:5808356","CGI"]
[1,5819606,5819733,128,41,0.451122024496811,0.23052893836512,0.220593086131692,207.693351611942,"CHH","1:5818383:5820449","CGI"]
[1,5819606,5819733,128,41,0.451122024496811,0.23052893836512,0.220593086131692,207.693351611942,"CHH","Os01g0206800","promoter","Os01g0206800","Protein kinase, core domain containing protein && sp|C0LGQ4|MDIS2_ARATH Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 && -"]
[1,5826064,5826346,283,67,0.348109462073812,0.107742087033741,0.240367375040072,386.21373376855,"CHH","1:5825735:5843614","CGI"]
[1,5849171,5849340,170,60,0.251311072365,0.139520636059408,0.111790436305591,325.693545951243,"CHH","1:5848865:5850866","CGI_shore"]
[1,5858770,5858850,81,23,0.0929813551549988,0.0214758936854782,0.0715054614695206,108.49772357229,"CHH","1:5857825:5859826","CGI_shore"]
[1,5903818,5904040,223,61,0.231237409386435,0.070211490951909,0.161025918434526,405.048931634986,"CHH","1:5899417:5909272","CGI"]
[1,5903818,5904040,223,61,0.231237409386435,0.070211490951909,0.161025918434526,405.048931634986,"CHH","Os01g0208700","intron","PEP carboxylase 2, Phosphoenolpyruvate carboxylase 2, phosphoenolpyruvate carboxylase 4, PEPCase 4","Similar to Phosphoenolpyruvate carboxylase (Fragment) && sp|Q84VW9|CAPP3_ARATH Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana OX=3702 GN=PPC3 PE=1 SV=2 && PF00311:Phosphoenolpyruvate carboxylase"]
[1,5917498,5917619,122,42,0.329404774464287,0.144153200720823,0.185251573743463,206.026759724621,"CHH","1:5916014:5918014","CGI_shore"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209566","promoter","Os01g0209566","Hypothetical protein && - && -"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209500","TES","Os01g0209500","Zinc finger, RING-type domain containing protein && sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 && -"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209500","exon","Os01g0209500","Zinc finger, RING-type domain containing protein && sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 && -"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209500","utr3","Os01g0209500","Zinc finger, RING-type domain containing protein && sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 && -"]
[1,6014275,6014361,87,18,0.0094899587104579,0.100551405764477,-0.0910614470540188,-94.9588915166552,"CHH","1:6013509:6015509","CGI_shore"]
[1,6014275,6014361,87,18,0.0094899587104579,0.100551405764477,-0.0910614470540188,-94.9588915166552,"CHH","1:6012601:6014602","CGI_shore"]
[1,6032967,6033065,99,33,0.0823366758109962,0.0215165971054481,0.0608200787055481,127.846262064585,"CHH","Os01g0210900","promoter","Os01g0210900","Cytochrome P450 family protein && sp|O64697|C7101_ARATH Cytochrome P450 710A1 OS=Arabidopsis thaliana OX=3702 GN=CYP710A1 PE=1 SV=1 && PF00067:Cytochrome P450"]
[1,6032967,6033065,99,33,0.0823366758109962,0.0215165971054481,0.0608200787055481,127.846262064585,"CHH","1:6032899:6034900","CGI_shore"]
[1,6099761,6099986,226,71,0.541793446894485,0.386901207832002,0.154892239062483,379.666779355853,"CHH","1:6098660:6100660","CGI_shore"]
[1,6153246,6153359,114,35,0.0824134523426115,0.0265460513422781,0.0558674010003335,162.037222072849,"CHH","1:6152764:6154765","CGI_shore"]
[1,6153246,6153359,114,35,0.0824134523426115,0.0265460513422781,0.0558674010003335,162.037222072849,"CHH","1:6153238:6153722","CGI"]
[1,6198355,6198586,232,97,0.136164632733341,0.0612696503678035,0.0748949823655372,430.336488093601,"CHH","Os01g0213350","exon","Os01g0213350","Hypothetical gene && - && -"]
[1,6198355,6198586,232,97,0.136164632733341,0.0612696503678035,0.0748949823655372,430.336488093601,"CHH","Os01g0213350","utr3","Os01g0213350","Hypothetical gene && - && -"]
[1,6198355,6198586,232,97,0.136164632733341,0.0612696503678035,0.0748949823655372,430.336488093601,"CHH","1:6197381:6199381","CGI_shore"]
[1,6215124,6215208,85,18,0.0143282639855883,0.0957901534498677,-0.0814618894642794,-80.1720600417555,"CHH","1:6214423:6216423","CGI_shore"]
[1,6229195,6229291,97,14,0.16822594036096,0.0304007737551093,0.137825166605851,71.2219166851749,"CHH","1:6228430:6230430","CGI_shore"]
[1,6230573,6230899,327,87,0.197023678041894,0.0566883720567012,0.140335305985193,526.383253781212,"CHH","1:6230431:6230754","CGI"]
[1,6230573,6230899,327,87,0.197023678041894,0.0566883720567012,0.140335305985193,526.383253781212,"CHH","1:6230754:6232755","CGI_shore"]
[1,6230879,6230942,64,11,0.696064218240155,0.328424746743135,0.367639471497019,50.5057696598893,"CG","1:6230754:6232755","CGI_shore"]
[1,6238467,6238657,191,48,0.219502945160854,0.353779463922142,-0.134276518761288,-220.584514929691,"CHH","1:6238162:6240162","CGI_shore"]
[1,6285214,6285284,71,17,0.0981931210539431,0.0203238988328843,0.0778692222210587,88.7156299465274,"CHH","Os01g0214901","promoter","Os01g0214901","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6285214,6285284,71,17,0.0981931210539431,0.0203238988328843,0.0778692222210587,88.7156299465274,"CHH","1:6283286:6285287","CGI_shore"]
[1,6285214,6285284,71,17,0.0981931210539431,0.0203238988328843,0.0778692222210587,88.7156299465274,"CHH","1:6284255:6286255","CGI_shore"]
[1,6323410,6323622,213,49,0.278495572739433,0.165692985176867,0.112802587562566,242.732011906863,"CHH","Os01g0215725","promoter","Os01g0215725","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6331995,6332240,246,54,0.332682325598919,0.0942277385305265,0.238454587068393,374.512775316345,"CHH","1:6330732:6332733","CGI_shore"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","1:6340922:6342922","CGI_shore"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","1:6340973:6341456","CGI"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216000","intron","GDSL ESTERASE/LIPASE PROTEIN 7","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216150","exon","Os01g0216150","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216000","exon","GDSL ESTERASE/LIPASE PROTEIN 7","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216150","utr5","Os01g0216150","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6351317,6351415,99,14,0.52303672447132,0.897388563460957,-0.374351838989637,-60.8257711956757,"CG","1:6348650:6352767","CGI"]
[1,6351317,6351415,99,14,0.52303672447132,0.897388563460957,-0.374351838989637,-60.8257711956757,"CG","Os01g0216300","promoter","GDSL ESTERASE/LIPASE PROTEIN 8","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","Os01g0216350","intron","Os01g0216350","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","Os01g0216300","intron","GDSL ESTERASE/LIPASE PROTEIN 8","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","1:6354570:6356571","CGI_shore"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","1:6354599:6356599","CGI_shore"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","1:6355770:6357770","CGI_shore"]
[1,6376154,6376278,125,41,0.173765612054102,0.0377226815531364,0.136042930500965,217.990875340864,"CHH","Os01g0216900","intron","GDSL ESTERASE/LIPASE PROTEIN 11","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6376163,6376237,75,12,0.287482293109668,0.083104037967627,0.204378255142041,56.7462120348371,"CHG","Os01g0216900","intron","GDSL ESTERASE/LIPASE PROTEIN 11","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6408317,6408398,82,43,0.349187412968871,0.237611519422373,0.111575893546498,223.083025544271,"CHH","1:6407809:6409809","CGI_shore"]
[1,6417190,6417321,132,26,0.454492442964495,0.0128960419844645,0.441596400980031,211.974721519495,"CHH","Os01g0217500","intron","DJ-1/PfpI domain containing protein A, DJ-1 protein A","ThiJ/PfpI domain containing protein && sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana OX=3702 GN=DJ1B PE=1 SV=1 && PF01965:DJ-1/PfpI family"]
[1,6417190,6417321,132,26,0.454492442964495,0.0128960419844645,0.441596400980031,211.974721519495,"CHH","1:6416777:6418778","CGI_shore"]
[1,6417190,6417321,132,26,0.454492442964495,0.0128960419844645,0.441596400980031,211.974721519495,"CHH","1:6417010:6419010","CGI_shore"]
[1,6438931,6438991,61,14,0.284346590095899,0.125759444090232,0.158587146005667,69.6514308687699,"CHH","1:6437099:6439099","CGI_shore"]
[1,6440934,6441257,324,99,0.351955667282777,0.132336794847714,0.219618872435062,812.139514312526,"CHH","1:6439325:6441326","CGI_shore"]
[1,6440934,6441257,324,99,0.351955667282777,0.132336794847714,0.219618872435062,812.139514312526,"CHH","1:6440820:6442820","CGI_shore"]
[1,6539683,6539752,70,13,0.398461562161682,0.129622841647388,0.268838720514294,72.2314414641789,"CHH","1:6537550:6544433","CGI"]
[1,6539683,6539752,70,13,0.398461562161682,0.129622841647388,0.268838720514294,72.2314414641789,"CHH","Os01g0219500","promoter","non-specific lipid transfer protein 1.1, lipid transfer protein 1.1, type 1 non-specific lipid transfer protein 1","Plant lipid transfer protein/Par allergen family protein && sp|Q5NAT8|GUN1_ORYSJ Endoglucanase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLU7 PE=2 SV=1 && -"]
[1,6660060,6660142,83,12,0.652036981915747,0.843470398523572,-0.191433416607824,-57.0340119985488,"CG","Os01g0221600","exon","Os01g0221600","Aluminum-activated malate transporter, Malate-permeable anion channel, Facilitation of malate efflux from cell && sp|Q9LS46|ALMT9_ARATH Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana OX=3702 GN=ALMT9 PE=2 SV=1 && PF11744:Aluminium activated malate transporter"]
[1,6801983,6802082,100,29,0.0828697214570391,0.197022215350113,-0.114152493893074,-169.692478835737,"CHH","1:6801300:6803300","CGI_shore"]
[1,6866930,6867078,149,46,0.0272083245913331,0.147817280012751,-0.120608955421418,-200.835219737864,"CHH","1:6866389:6868389","CGI_shore"]
[1,6866930,6867078,149,46,0.0272083245913331,0.147817280012751,-0.120608955421418,-200.835219737864,"CHH","1:6866413:6866950","CGI"]
[1,6866930,6867078,149,46,0.0272083245913331,0.147817280012751,-0.120608955421418,-200.835219737864,"CHH","1:6866950:6868951","CGI_shore"]
[1,7020385,7020482,98,27,0.22898467073084,0.146467501649986,0.0825171690808544,109.474795875379,"CHH","1:7019908:7021909","CGI_shore"]
[1,7081379,7081495,117,18,0.35152840141391,0.57447973633888,-0.22295133492497,-96.3613896951358,"CG","1:7071479:7082915","CGI"]
[1,7089729,7089929,201,51,0.26016498742164,0.0705235567692847,0.189641430652356,315.437076072436,"CHH","1:7089156:7091157","CGI_shore"]
[1,7089729,7089929,201,51,0.26016498742164,0.0705235567692847,0.189641430652356,315.437076072436,"CHH","Os01g0228300","promoter","Os01g0228300","Mpv17/PMP22 family protein && sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis OX=8355 GN=mpv17 PE=2 SV=2 && PF04117:Mpv17 / PMP22 family"]
[1,7089729,7089929,201,51,0.26016498742164,0.0705235567692847,0.189641430652356,315.437076072436,"CHH","1:7089718:7091718","CGI_shore"]
[1,7114302,7114467,166,43,0.171412936483779,0.106009275452756,0.0654036610310222,199.342374837668,"CHH","1:7113557:7115557","CGI_shore"]
[1,7154010,7154271,262,63,0.227856955265467,0.0777416820139103,0.150115273251556,334.053204909802,"CHH","1:7153841:7154149","CGI"]
[1,7154010,7154271,262,63,0.227856955265467,0.0777416820139103,0.150115273251556,334.053204909802,"CHH","1:7154149:7156150","CGI_shore"]
[1,7175212,7175385,174,50,0.414305333313729,0.250438765996488,0.163866567317242,289.693651964459,"CHH","Os01g0229600","promoter","Os01g0229600","Conserved hypothetical protein && - && -"]
[1,7175212,7175385,174,50,0.414305333313729,0.250438765996488,0.163866567317242,289.693651964459,"CHH","Os01g0229500","intron","Os01g0229500","Thioesterase superfamily domain containing protein && - && PF03061:Thioesterase superfamily"]
[1,7175212,7175385,174,50,0.414305333313729,0.250438765996488,0.163866567317242,289.693651964459,"CHH","1:7173598:7186758","CGI"]
[1,7225939,7226092,154,46,0.300691395174537,0.172189494536078,0.128501900638459,220.764684880736,"CHH","Os01g0230200","promoter","basic helix-loop-helix protein 074","Basic helix-loop-helix dimerisation region bHLH domain containing protein && sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis thaliana OX=3702 GN=BHLH68 PE=1 SV=2 && -"]
[1,7231873,7232059,187,41,0.130298028241369,0.00721423695071707,0.123083791290652,227.009155695456,"CHH","1:7231106:7233107","CGI_shore"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","1:7342820:7344820","CGI_shore"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","1:7343772:7345772","CGI_shore"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","Os01g0232500","intron","UBIQUITIN-CONJUGATING ENZYME 42","Ubiquitin-conjugating enzyme/RWD-like domain containing protein && sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana OX=3702 GN=UBC26 PE=2 SV=2 && PF00179:Ubiquitin-conjugating enzyme"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","Os01g0232550","intron","Os01g0232550","Hypothetical conserved gene && sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana OX=3702 GN=UBC26 PE=2 SV=2 && -"]
[1,7398188,7398414,227,96,0.186742649009885,0.0840533869085955,0.10268926210129,429.635351102716,"CHH","1:7397219:7399219","CGI_shore"]
[1,7398188,7398414,227,96,0.186742649009885,0.0840533869085955,0.10268926210129,429.635351102716,"CHH","1:7397815:7399816","CGI_shore"]
[1,7421794,7421873,80,13,0.314063036086913,0.173981960672452,0.140081075414461,53.5816879630555,"CG","1:7421477:7421832","CGI"]
[1,7421794,7421873,80,13,0.314063036086913,0.173981960672452,0.140081075414461,53.5816879630555,"CG","Os01g0234100","exon","Os01g0234100","Transcriptional factor B3 family protein && sp|Q0JP99|Y1341_ORYSJ B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0234100 PE=2 SV=1 && PF02362:B3 DNA binding domain"]
[1,7421794,7421873,80,13,0.314063036086913,0.173981960672452,0.140081075414461,53.5816879630555,"CG","1:7421832:7423833","CGI_shore"]
[1,7427178,7427462,285,97,0.119188222493767,0.269308533151765,-0.150120310657998,-680.567096241445,"CG","Os01g0234200","exon","Os01g0234200","Similar to DNA topoisomerase 2 && sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana OX=3702 GN=TOP2 PE=2 SV=2 && PF00204:DNA gyrase B"]
[1,7427178,7427462,285,97,0.119188222493767,0.269308533151765,-0.150120310657998,-680.567096241445,"CG","1:7427115:7431339","CGI"]
[1,7427178,7427462,285,97,0.119188222493767,0.269308533151765,-0.150120310657998,-680.567096241445,"CG","Os01g0234300","promoter","Os01g0234300","Similar to Pectinesterase && sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana OX=3702 GN=PME34 PE=2 SV=1 && PF04043:Plant invertase/pectin methylesterase inhibitor|PF01095:Pectinesterase"]
[1,7469453,7469641,189,61,0.150232911474708,0.0519892441304571,0.0982436673442506,345.746607890358,"CHH","Os01g0235300","promoter","Os01g0235300","SOUL haem-binding protein domain containing protein && - && PF04832:SOUL heme-binding protein"]
[1,7469453,7469641,189,61,0.150232911474708,0.0519892441304571,0.0982436673442506,345.746607890358,"CHH","1:7468714:7470714","CGI_shore"]
[1,7489101,7489296,196,49,0.25024784791829,0.0942011034816289,0.156046744436661,250.318767834122,"CHH","1:7489228:7490003","CGI"]
[1,7489101,7489296,196,49,0.25024784791829,0.0942011034816289,0.156046744436661,250.318767834122,"CHH","1:7487227:7489227","CGI_shore"]
[1,7525227,7525349,123,26,0.125720196489659,0.295397032943563,-0.169676836453905,-112.366736082245,"CG","1:7523479:7525479","CGI_shore"]
[1,7607504,7607680,177,56,0.121652608524665,0.0108822540121553,0.11077035451251,293.356275619291,"CHH","Os01g0237366","promoter","Os01g0237366","NAD(P)-binding domain containing protein && sp|I1LHU6|IFR_SOYBN Isoflavone reductase OS=Glycine max OX=3847 GN=IFR PE=1 SV=1 && PF05368:NmrA-like family"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","1:7623243:7624520","CGI"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","Os01g0237750","exon","Os01g0237750","Hypothetical conserved gene && sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays OX=4577 GN=IRL PE=2 SV=1 && PF05368:NmrA-like family"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","Os01g0237750","TSS","Os01g0237750","Hypothetical conserved gene && sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays OX=4577 GN=IRL PE=2 SV=1 && PF05368:NmrA-like family"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","Os01g0237750","promoter","Os01g0237750","Hypothetical conserved gene && sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays OX=4577 GN=IRL PE=2 SV=1 && PF05368:NmrA-like family"]
[1,7669295,7669488,194,74,0.243859837642134,0.127537067734727,0.116322769907407,336.923563765479,"CHH","Os01g0238600","promoter","Os01g0238600","Nucleic acid-binding, OB-fold domain containing protein && sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1 && -"]
[1,7669295,7669488,194,74,0.243859837642134,0.127537067734727,0.116322769907407,336.923563765479,"CHH","1:7634129:7676202","CGI"]
[1,7703212,7703294,83,12,0.602648476325906,0.14188490528379,0.460763571042116,65.4518522396861,"CG","1:7702298:7704299","CGI_shore"]
[1,7715380,7715751,372,103,0.196070625319339,0.068740292133806,0.127330333185533,709.997864972708,"CHH","Os01g0239100","intron","DnaJ domain protein B1","Heat shock protein DnaJ family protein && sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii OX=9601 GN=DNAJB4 PE=2 SV=1 && -"]
[1,7715380,7715751,372,103,0.196070625319339,0.068740292133806,0.127330333185533,709.997864972708,"CHH","Os01g0239150","intron","Os01g0239150","Hypothetical protein && sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii OX=9601 GN=DNAJB4 PE=2 SV=1 && -"]
[1,7839196,7839376,181,60,0.281468313807276,0.139557669355502,0.141910644451774,343.79923820331,"CHH","1:7838168:7840169","CGI_shore"]
[1,7861847,7862044,198,50,0.282298505106282,0.129922656150329,0.152375848955952,290.931480519214,"CHH","Os01g0242500","promoter","Os01g0242500","D-tyrosyl-tRNA(Tyr) deacylase family protein && sp|Q54EY1|DTD_DICDI D-aminoacyl-tRNA deacylase OS=Dictyostelium discoideum OX=44689 GN=dtd PE=3 SV=1 && PF02580:D-Tyr-tRNA(Tyr) deacylase"]
[1,7861847,7862044,198,50,0.282298505106282,0.129922656150329,0.152375848955952,290.931480519214,"CHH","1:7860062:7862063","CGI_shore"]
[1,7921737,7922136,400,90,0.258847529583207,0.10572080917477,0.153126720408437,541.791955097297,"CHH","1:7920340:7922341","CGI_shore"]
[1,7921737,7922136,400,90,0.258847529583207,0.10572080917477,0.153126720408437,541.791955097297,"CHH","1:7922098:7924098","CGI_shore"]
[1,7935129,7935214,86,11,0.841322034466264,0.663655665232878,0.177666369233386,49.0242616533852,"CG","Os01g0243800","promoter","Os01g0243800","Hypothetical conserved gene && - && -"]
[1,7935129,7935214,86,11,0.841322034466264,0.663655665232878,0.177666369233386,49.0242616533852,"CG","1:7933729:7935730","CGI_shore"]
[1,7935129,7935214,86,11,0.841322034466264,0.663655665232878,0.177666369233386,49.0242616533852,"CG","1:7934058:7936058","CGI_shore"]
[1,7951484,7951691,208,72,0.109988499663619,0.0326090421378219,0.0773794575257971,385.073222709173,"CHH","1:7949887:7951887","CGI_shore"]
[1,7965863,7966005,143,32,0.304643951852524,0.155395185177046,0.149248766675478,152.167353482906,"CHH","1:7964262:7966262","CGI_shore"]
[1,7982606,7982767,162,45,0.137286478188702,0.0347540898797796,0.102532388308922,239.649580402844,"CHH","1:7981238:7983238","CGI_shore"]
[1,7982606,7982767,162,45,0.137286478188702,0.0347540898797796,0.102532388308922,239.649580402844,"CHH","1:7981554:7983555","CGI_shore"]
[1,7982606,7982767,162,45,0.137286478188702,0.0347540898797796,0.102532388308922,239.649580402844,"CHH","1:7981927:7983927","CGI_shore"]
[1,7987348,7987411,64,12,0.0858142209823589,0.00947129681008391,0.076342924172275,89.8272098262399,"CHH","1:7986953:7988953","CGI_shore"]
[1,8014630,8014807,178,51,0.231235489084463,0.0187669988661867,0.212468490218276,298.561808848479,"CHH","1:8012691:8014691","CGI_shore"]
[1,8014630,8014807,178,51,0.231235489084463,0.0187669988661867,0.212468490218276,298.561808848479,"CHH","1:8014692:8015244","CGI"]
[1,8144248,8144445,198,53,0.143001344687646,0.0512185650976064,0.0917827795900399,325.37110524911,"CHH","1:8142472:8144473","CGI_shore"]
[1,8201095,8201153,59,23,0.243138929756165,0.14971639674797,0.0934225330081945,100.845762030626,"CG","Os01g0249050","promoter","Os01g0249050","Hypothetical protein && sp|Q4PR53|EXPA9_ORYSJ Expansin-A9 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA9 PE=2 SV=2 && PF01357:Pollen allergen|PF03330:Lytic transglycolase"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","exon","Os01g0249300","Lg106-like family protein && - && -"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","utr5","Os01g0249300","Lg106-like family protein && - && -"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","1:8214787:8215132","CGI"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","promoter","Os01g0249300","Lg106-like family protein && - && -"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","1:8215132:8217133","CGI_shore"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","TSS","Os01g0249300","Lg106-like family protein && - && -"]
[1,8216789,8216982,194,61,0.143008461096597,0.0541091194129016,0.0888993416836954,290.162905064961,"CHH","Os01g0249300","promoter","Os01g0249300","Lg106-like family protein && - && -"]
[1,8216789,8216982,194,61,0.143008461096597,0.0541091194129016,0.0888993416836954,290.162905064961,"CHH","1:8215132:8217133","CGI_shore"]
[1,8220847,8220990,144,28,0.379308399895926,0.617460251137865,-0.238151851241939,-142.466167332548,"CHG","1:8219248:8221248","CGI_shore"]
[1,8220847,8220990,144,28,0.379308399895926,0.617460251137865,-0.238151851241939,-142.466167332548,"CHG","1:8219972:8221116","CGI"]
[1,8220887,8221116,230,59,0.58786855270591,0.826195623694623,-0.238327070988713,-425.607032008204,"CG","1:8219248:8221248","CGI_shore"]
[1,8220887,8221116,230,59,0.58786855270591,0.826195623694623,-0.238327070988713,-425.607032008204,"CG","1:8219972:8221116","CGI"]
[1,8228234,8228438,205,53,0.140020693823574,0.0264453694886865,0.113575324334888,369.653472629939,"CHH","Os01g0249700","promoter","Os01g0249700","Heavy metal-associated domain, HMA domain containing protein && - && -"]
[1,8228234,8228438,205,53,0.140020693823574,0.0264453694886865,0.113575324334888,369.653472629939,"CHH","1:8227534:8229534","CGI_shore"]
[1,8261097,8261168,72,6,0.370230625719992,0.753177750691654,-0.382947124971662,-33.1679391601733,"CHG","1:8261007:8263008","CGI_shore"]
[1,8261097,8261168,72,6,0.370230625719992,0.753177750691654,-0.382947124971662,-33.1679391601733,"CHG","1:8261141:8263141","CGI_shore"]
[1,8419734,8419891,158,35,0.318435307106942,0.0530842300448605,0.265351077062082,269.761229046035,"CHH","1:8418919:8420920","CGI_shore"]
[1,8419734,8419891,158,35,0.318435307106942,0.0530842300448605,0.265351077062082,269.761229046035,"CHH","Os01g0254000","promoter","ARF-like protein 1d","Similar to NTGB2 (Fragment) && sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A OS=Arabidopsis thaliana OX=3702 GN=SAR1A PE=2 SV=1 && PF00025:ADP-ribosylation factor family"]
[1,8420457,8420524,68,21,0.319494871198801,0.167094419466219,0.152400451732582,96.0443128365454,"CHH","1:8418919:8420920","CGI_shore"]
[1,8420457,8420524,68,21,0.319494871198801,0.167094419466219,0.152400451732582,96.0443128365454,"CHH","Os01g0254000","promoter","ARF-like protein 1d","Similar to NTGB2 (Fragment) && sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A OS=Arabidopsis thaliana OX=3702 GN=SAR1A PE=2 SV=1 && PF00025:ADP-ribosylation factor family"]
[1,8531580,8531646,67,23,0.347668676469892,0.227094740891015,0.120573935578877,113.285064552452,"CHH","1:8522844:8537222","CGI"]
[1,8532754,8532844,91,12,0.110901906929404,0.32360398146582,-0.212702074536416,-76.4947447160578,"CG","1:8522844:8537222","CGI"]
[1,8537765,8537837,73,20,0.494704462315618,0.278328615378367,0.216375846937252,128.838444787234,"CHH","1:8537222:8539223","CGI_shore"]
[1,8537765,8537837,73,20,0.494704462315618,0.278328615378367,0.216375846937252,128.838444787234,"CHH","Os01g0256300","promoter","Os01g0256300","Conserved hypothetical protein && - && -"]
[1,8540471,8540548,78,15,0.171690343991197,0.381700669807208,-0.210010325816011,-69.7564733958993,"CG","Os01g0256400","promoter","Os01g0256400","Similar to Dynein light chain 1 protein DLC-1 (Fragment) && sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1 && PF01221:Dynein light chain type 1"]
[1,8540471,8540548,78,15,0.171690343991197,0.381700669807208,-0.210010325816011,-69.7564733958993,"CG","1:8540016:8541237","CGI"]
[1,8570584,8570672,89,23,0.187372421756763,0.0615795728838977,0.125792848872866,131.576209852854,"CHH","Os01g0256800","promoter","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4","Similar to zinc finger helicase family protein && sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256800 PE=2 SV=1 && PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain"]
[1,8570584,8570672,89,23,0.187372421756763,0.0615795728838977,0.125792848872866,131.576209852854,"CHH","1:8569905:8571906","CGI_shore"]
[1,8612680,8612784,105,34,0.148415576159717,0.0421522109906498,0.106263365169067,153.908911338158,"CHH","1:8612141:8614141","CGI_shore"]
[1,8618259,8618470,212,67,0.114241702663647,0.0510189112297318,0.0632227914339155,271.729540834285,"CHH","1:8618103:8618442","CGI"]
[1,8618259,8618470,212,67,0.114241702663647,0.0510189112297318,0.0632227914339155,271.729540834285,"CHH","1:8618442:8620443","CGI_shore"]
[1,8672007,8672200,194,59,0.346112574402329,0.0801524882182251,0.265960086184104,427.048690431971,"CHH","1:8670586:8672587","CGI_shore"]
[1,8672007,8672200,194,59,0.346112574402329,0.0801524882182251,0.265960086184104,427.048690431971,"CHH","1:8671856:8673856","CGI_shore"]
[1,8674689,8674786,98,12,0.516909325816865,0.0592646723488744,0.457644653467991,79.2273892471445,"CHH","1:8674364:8676365","CGI_shore"]
[1,8676974,8677072,99,18,0.149662754811736,0.0135727490979258,0.13609000571381,89.8482939854853,"CHH","1:8676500:8678500","CGI_shore"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","1:8700621:8700887","CGI"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","1:8700887:8702888","CGI_shore"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","Os01g0259400","promoter","Os01g0259400","Armadillo-type fold domain containing protein && sp|F4JY37|RUK_ARATH Serine/threonine-protein kinase RUNKEL OS=Arabidopsis thaliana OX=3702 GN=RUK PE=1 SV=1 && PF00069:Protein kinase domain"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","1:8699798:8701799","CGI_shore"]
[1,8714785,8714882,98,29,0.304750493510512,0.182624062800645,0.122126430709867,128.537148217565,"CHH","1:8714776:8717917","CGI"]
[1,8714946,8715002,57,18,0.330162701879009,0.189047699774748,0.141115002104261,83.7622738406901,"CHH","1:8714776:8717917","CGI"]
[1,8715796,8715971,176,51,0.233247617962851,0.103297758746389,0.129949859216462,263.360192878234,"CHH","1:8714776:8717917","CGI"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8749142:8751142","CGI_shore"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8749154:8749547","CGI"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8749547:8751548","CGI_shore"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","Os01g0260500","utr5","Os01g0260500","Hypothetical conserved gene && sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 && -"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","Os01g0260500","exon","Os01g0260500","Hypothetical conserved gene && sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 && -"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8748565:8750566","CGI_shore"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","Os01g0260950","exon","Os01g0260950","Conserved hypothetical protein && - && -"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","Os01g0260950","utr3","Os01g0260950","Conserved hypothetical protein && - && -"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","1:8784114:8786114","CGI_shore"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","Os01g0260950","intron","Os01g0260950","Conserved hypothetical protein && - && -"]
[1,8908261,8908424,164,40,0.25800968973248,0.0156588675497155,0.242350822182764,238.064801609298,"CHH","1:8906972:8908973","CGI_shore"]
[1,8908261,8908424,164,40,0.25800968973248,0.0156588675497155,0.242350822182764,238.064801609298,"CHH","1:8907924:8909924","CGI_shore"]
[1,8954811,8954944,134,29,0.358045070494396,0.14445022890983,0.213594841584566,167.469981203093,"CHH","1:8953785:8955786","CGI_shore"]
[1,8954811,8954944,134,29,0.358045070494396,0.14445022890983,0.213594841584566,167.469981203093,"CHH","1:8954355:8956355","CGI_shore"]
[1,9010082,9010191,110,18,0.295606432520086,0.139001127320683,0.156605305199403,109.661610229851,"CHH","Os01g0264700","promoter","Os01g0264700","Cellular retinaldehyde binding/alpha-tocopherol transport family protein && sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis OX=8364 GN=sec14l1 PE=2 SV=1 && -"]
[1,9010082,9010191,110,18,0.295606432520086,0.139001127320683,0.156605305199403,109.661610229851,"CHH","1:9008311:9010312","CGI_shore"]
[1,9037084,9037269,186,48,0.10015845284223,0.0223951626485331,0.0777632901936973,275.666806634654,"CHH","1:9035363:9037364","CGI_shore"]
[1,9041064,9041381,318,115,0.155767975548549,0.0644411842514375,0.0913267912971114,486.092176109501,"CHH","Os01g0265400","exon","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9041064,9041381,318,115,0.155767975548549,0.0644411842514375,0.0913267912971114,486.092176109501,"CHH","Os01g0265400","utr3","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9042341,9042543,203,45,0.116261270734958,0.0221913966350363,0.0940698740999219,202.632240522439,"CHH","Os01g0265400","intron","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9042341,9042543,203,45,0.116261270734958,0.0221913966350363,0.0940698740999219,202.632240522439,"CHH","1:9042350:9044350","CGI_shore"]
[1,9042946,9043004,59,15,0.191700528707455,0.093635423846578,0.0980651048608769,75.1946595671164,"CHH","Os01g0265400","intron","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9042946,9043004,59,15,0.191700528707455,0.093635423846578,0.0980651048608769,75.1946595671164,"CHH","1:9042350:9044350","CGI_shore"]
[1,9043168,9043297,130,44,0.05757088834904,0.0144504545924487,0.0431204337565912,199.744287668512,"CHH","Os01g0265400","intron","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9043168,9043297,130,44,0.05757088834904,0.0144504545924487,0.0431204337565912,199.744287668512,"CHH","1:9042350:9044350","CGI_shore"]
[1,9123444,9124461,1018,47,0.163160591558842,0.0377335085285083,0.125427083030333,240.856423279376,"CHH","1:9121693:9123694","CGI_shore"]
[1,9221297,9221418,122,16,0.282124929032117,0.519749679089995,-0.237624750057878,-70.9032086361142,"CHG","1:9220919:9222919","CGI_shore"]
[1,9221297,9221418,122,16,0.282124929032117,0.519749679089995,-0.237624750057878,-70.9032086361142,"CHG","1:9221123:9221550","CGI"]
[1,9221381,9221542,162,64,0.143307147330733,0.0378314370657841,0.105475710264949,412.020556888229,"CHH","1:9220919:9222919","CGI_shore"]
[1,9221381,9221542,162,64,0.143307147330733,0.0378314370657841,0.105475710264949,412.020556888229,"CHH","1:9221123:9221550","CGI"]
[1,9222087,9222301,215,50,0.331364105224211,0.065612552072303,0.265751553151908,330.335325476062,"CHH","1:9220919:9222919","CGI_shore"]
[1,9222087,9222301,215,50,0.331364105224211,0.065612552072303,0.265751553151908,330.335325476062,"CHH","1:9221550:9223551","CGI_shore"]
[1,9249978,9250145,168,32,0.318444493658161,0.04772218996836,0.270722303689801,168.116069784018,"CHH","1:9244812:9255205","CGI"]
[1,9249978,9250145,168,32,0.318444493658161,0.04772218996836,0.270722303689801,168.116069784018,"CHH","Os01g0268600","intron","Os01g0268600","Glycoside hydrolase, family 31 protein && sp|Q9F234|AGL2_BACTQ Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens OX=1425 PE=3 SV=1 && PF01055:Glycosyl hydrolases family 31"]
[1,9258625,9258823,199,55,0.211103152499383,0.0509829124657415,0.160120240033641,240.989195738703,"CHH","1:9257131:9259131","CGI_shore"]
[1,9258625,9258823,199,55,0.211103152499383,0.0509829124657415,0.160120240033641,240.989195738703,"CHH","Os01g0268800","promoter","Rhomboid 2, RHOMBOID 2","Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote domain containing protein && sp|Q9LET3|RBL20_ARATH Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 && PF00627:UBA/TS-N domain|PF01694:Rhomboid family"]
[1,9258625,9258823,199,55,0.211103152499383,0.0509829124657415,0.160120240033641,240.989195738703,"CHH","1:9256937:9258938","CGI_shore"]
[1,9267620,9267805,186,43,0.296836747079811,0.152727286419856,0.144109460659956,231.48834272954,"CHH","Os01g0268900","intron","Os01g0268900","Conserved hypothetical protein && sp|Q8GWA2|MOC1_ARATH Holliday junction resolvase MOC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MOC1 PE=1 SV=1 && -"]
[1,9313560,9313625,66,17,0.324194488650973,0.114405874183634,0.209788614467339,83.6243162017223,"CHH","1:9312129:9314129","CGI_shore"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","Os01g0269950","utr5","Os01g0269950","Hypothetical protein && sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1 && PF00022:Actin"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","Os01g0269950","exon","Os01g0269950","Hypothetical protein && sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1 && PF00022:Actin"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","Os01g0269900","exon","ARP6","Actin/actin-like family protein && sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1 && PF00022:Actin"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","1:9320868:9322868","CGI_shore"]
[1,9334037,9334229,193,65,0.373530589415018,0.119286044181457,0.254244545233561,372.10467316671,"CHH","1:9332545:9334545","CGI_shore"]
[1,9390301,9390480,180,50,0.0267115172339909,0.103441635750162,-0.0767301185161706,-215.404672025261,"CHH","Os01g0271500","exon","Os01g0271500","Similar to RUB-activating enzyme (Ubiquitin activating enzyme E1-like protein) && sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=ECR1 PE=1 SV=2 && PF08825:E2 binding domain|PF00899:ThiF family"]
[1,9390301,9390480,180,50,0.0267115172339909,0.103441635750162,-0.0767301185161706,-215.404672025261,"CHH","Os01g0271500","utr3","Os01g0271500","Similar to RUB-activating enzyme (Ubiquitin activating enzyme E1-like protein) && sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=ECR1 PE=1 SV=2 && PF08825:E2 binding domain|PF00899:ThiF family"]
[1,9392177,9392365,189,76,0.290802020129207,0.120369904404164,0.170432115725042,493.35472975894,"CHH","1:9390853:9392853","CGI_shore"]
[1,9393700,9393773,74,16,0.167797652878413,0.0485888329397081,0.119208819938705,85.9545873209504,"CHH","1:9393591:9395592","CGI_shore"]
[1,9603781,9603879,99,15,0.271981215643819,0.557914438116206,-0.285933222472387,-74.3237885185566,"CHG","1:9603186:9604460","CGI"]
[1,9604124,9604185,62,13,0.261160855227197,0.136802386455244,0.124358468771953,79.1303264961658,"CHH","1:9603186:9604460","CGI"]
[1,9604265,9604318,54,30,0.232458561766452,0.11468731319908,0.117771248567372,139.259290535849,"CHH","1:9603186:9604460","CGI"]
[1,9640313,9640441,129,34,0.215802513213894,0.0147239104131171,0.201078602800777,168.382934336847,"CHH","Os01g0275600","promoter","ARGONAUTE 4A","Similar to Argonaute 4 protein && sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica OX=39947 GN=AGO4A PE=2 SV=1 && PF16488:Argonaute linker 2 domain|PF08699:Argonaute linker 1 domain|PF02170:PAZ domain|PF02171:Piwi domain|PF16486:N-terminal domain of argonaute"]
[1,9640313,9640441,129,34,0.215802513213894,0.0147239104131171,0.201078602800777,168.382934336847,"CHH","1:9640208:9642209","CGI_shore"]
[1,9640921,9641262,342,120,0.157297026346345,0.0561493641764615,0.101147662169883,646.736534185861,"CHH","1:9640208:9642209","CGI_shore"]
[1,9697979,9698034,56,9,0.562962559783946,0.796031305732756,-0.23306874594881,-40.2201965477701,"CG","Os01g0276700","intron","Os01g0276700","Similar to Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK) && sp|Q42954|KPYC_TOBAC Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum OX=4097 PE=2 SV=1 && -"]
[1,9697979,9698034,56,9,0.562962559783946,0.796031305732756,-0.23306874594881,-40.2201965477701,"CG","1:9697356:9699356","CGI_shore"]
[1,9731658,9731750,93,7,0.281164943685294,0.638405981236306,-0.357241037551012,-37.3520812695493,"CHG","1:9730842:9732842","CGI_shore"]
[1,9796236,9796311,76,15,0.293325034161121,0.173780909849475,0.119544124311647,71.6051848046115,"CHH","Os01g0278200","promoter","Os01g0278200","Similar to Ran-binding protein 17 && - && -"]
[1,9796236,9796311,76,15,0.293325034161121,0.173780909849475,0.119544124311647,71.6051848046115,"CHH","1:9796181:9798182","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9947018:9949018","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","Os01g0280000","promoter","Os01g0280000","Similar to Histone mRNA exonuclease 1 && sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1 && PF00929:Exonuclease"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9947978:9949979","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9949019:9950080","CGI"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9950080:9952081","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9950101:9952101","CGI_shore"]
[1,10076767,10076883,117,32,0.124709098542884,0.0210593753481376,0.103649723194747,159.191403831008,"CHH","Os01g0282251","utr5","Os01g0282251","Similar to CAA30375.1 protein && - && -"]
[1,10076767,10076883,117,32,0.124709098542884,0.0210593753481376,0.103649723194747,159.191403831008,"CHH","Os01g0282251","exon","Os01g0282251","Similar to CAA30375.1 protein && - && -"]
[1,10076767,10076883,117,32,0.124709098542884,0.0210593753481376,0.103649723194747,159.191403831008,"CHH","1:10076024:10098664","CGI"]
[1,10147189,10147306,118,43,0.340673368463796,0.230957515096301,0.109715853367495,189.2117216197,"CHH","1:10145925:10147926","CGI_shore"]
[1,10147189,10147306,118,43,0.340673368463796,0.230957515096301,0.109715853367495,189.2117216197,"CHH","1:10146428:10148428","CGI_shore"]
[1,10147189,10147306,118,43,0.340673368463796,0.230957515096301,0.109715853367495,189.2117216197,"CHH","Os01g0283700","promoter","Os01g0283700","Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44) && sp|Q6K9A2|CCR1_ORYSJ Cinnamoyl-CoA reductase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCR1 PE=1 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[1,10189046,10189329,284,51,0.020732028571368,0.254118414830281,-0.233386386258913,-390.687821134585,"CHH","1:10187603:10189604","CGI_shore"]
[1,10282809,10283009,201,64,0.110719581977651,0.0202529088077972,0.0904666731698534,334.809473713166,"CHH","1:10281106:10283107","CGI_shore"]
[1,10282809,10283009,201,64,0.110719581977651,0.0202529088077972,0.0904666731698534,334.809473713166,"CHH","1:10281468:10283468","CGI_shore"]
[1,10282809,10283009,201,64,0.110719581977651,0.0202529088077972,0.0904666731698534,334.809473713166,"CHH","1:10282216:10284217","CGI_shore"]
[1,10290794,10290892,99,31,0.0918482258764319,0.0268525214059211,0.0649957044705108,140.560003610704,"CHH","1:10289358:10292749","CGI"]
[1,10290794,10290892,99,31,0.0918482258764319,0.0268525214059211,0.0649957044705108,140.560003610704,"CHH","Os01g0286600","promoter","Proporphyrinogen oxidase, protoporphyrinogen oxidase 1","Similar to Plastidal protoporphyrinogen oxidase && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && PF01593:Flavin containing amine oxidoreductase"]
[1,10290794,10290892,99,31,0.0918482258764319,0.0268525214059211,0.0649957044705108,140.560003610704,"CHH","Os01g0286500","promoter","Os01g0286500","Conserved hypothetical protein && - && -"]
[1,10307874,10307942,69,18,0.106768308874483,0.0192787690392988,0.0874895398351843,90.6923082413986,"CHH","1:10306080:10308080","CGI_shore"]
[1,10324857,10324970,114,47,0.0970074171361042,0.0375718582290209,0.0594355589070833,222.382142470591,"CHH","1:10323060:10325060","CGI_shore"]
[1,10325919,10326248,330,89,0.0929333349482969,0.23167403580633,-0.138740700858033,-507.734273366027,"CG","1:10325061:10326955","CGI"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10453119:10455119","CGI_shore"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10453769:10454022","CGI"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10451768:10453768","CGI_shore"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10452543:10454543","CGI_shore"]
[1,10504788,10504968,181,41,0.269867288198299,0.118014988565645,0.151852299632654,208.651973640236,"CHH","1:10504306:10504828","CGI"]
[1,10504788,10504968,181,41,0.269867288198299,0.118014988565645,0.151852299632654,208.651973640236,"CHH","1:10504467:10506467","CGI_shore"]
[1,10504788,10504968,181,41,0.269867288198299,0.118014988565645,0.151852299632654,208.651973640236,"CHH","1:10504828:10506829","CGI_shore"]
[1,10507889,10508087,199,72,0.202721998249701,0.0771062745447595,0.125615723704941,351.158191929527,"CHH","Os01g0290600","promoter","Os01g0290600","Similar to isopenicillin N epimerase && sp|Q5JNT6|LCYD2_ORYSJ Putative L-cysteine desulfhydrase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0290600 PE=3 SV=1 && PF00266:Aminotransferase class-V"]
[1,10507889,10508087,199,72,0.202721998249701,0.0771062745447595,0.125615723704941,351.158191929527,"CHH","1:10507035:10509036","CGI_shore"]
[1,10507889,10508087,199,72,0.202721998249701,0.0771062745447595,0.125615723704941,351.158191929527,"CHH","1:10507861:10510452","CGI"]
[1,10508490,10508581,92,13,0.33660435666486,0.49521582733835,-0.15861147067349,-56.9420793977393,"CHG","Os01g0290600","promoter","Os01g0290600","Similar to isopenicillin N epimerase && sp|Q5JNT6|LCYD2_ORYSJ Putative L-cysteine desulfhydrase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0290600 PE=3 SV=1 && PF00266:Aminotransferase class-V"]
[1,10508490,10508581,92,13,0.33660435666486,0.49521582733835,-0.15861147067349,-56.9420793977393,"CHG","1:10507035:10509036","CGI_shore"]
[1,10508490,10508581,92,13,0.33660435666486,0.49521582733835,-0.15861147067349,-56.9420793977393,"CHG","1:10507861:10510452","CGI"]
[1,10520028,10520191,164,21,0.177579782506099,0.413354241598001,-0.235774459091903,-98.9542909529228,"CG","1:10518328:10520328","CGI_shore"]
[1,10520266,10520363,98,18,0.060221469022827,0.179195595873859,-0.118974126851032,-83.7971588002638,"CG","1:10520329:10523844","CGI"]
[1,10520266,10520363,98,18,0.060221469022827,0.179195595873859,-0.118974126851032,-83.7971588002638,"CG","1:10518328:10520328","CGI_shore"]
[1,10587011,10587095,85,38,0.0359213998465424,0.167231992503198,-0.131310592656656,-214.649040666233,"CHH","1:10585034:10588043","CGI"]
[1,10602050,10602117,68,7,0.199345292194341,0.400488454039332,-0.201143161844991,-29.6353679059802,"CG","1:10601760:10603761","CGI_shore"]
[1,10654028,10654218,191,49,0.12643350356773,0.0246359007167919,0.101797602850938,320.679806913065,"CHH","Os01g0292900","intron","RICE SQUAMOSA PROMOTER-BINDING-LIKE 1","Similar to Squamosa-promoter binding-like protein 2 && sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL1 PE=2 SV=1 && PF03110:SBP domain"]
[1,10662616,10662676,61,11,0.836556168541458,0.674267743004615,0.162288425536843,42.757530660553,"CG","1:10662576:10663166","CGI"]
[1,10673268,10673470,203,76,0.124582734642249,0.0705386280089605,0.0540441066332886,298.285187793663,"CHH","1:10672364:10674364","CGI_shore"]
[1,10673268,10673470,203,76,0.124582734642249,0.0705386280089605,0.0540441066332886,298.285187793663,"CHH","Os01g0293200","promoter","Os01g0293200","Similar to predicted protein && sp|Q65XL5|WTF1_ORYSJ Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1 && -"]
[1,10701062,10701231,170,28,0.735643156156229,0.423671883595378,0.311971272560851,157.812702563393,"CG","1:10700990:10706115","CGI"]
[1,10701062,10701231,170,28,0.735643156156229,0.423671883595378,0.311971272560851,157.812702563393,"CG","Os01g0293800","exon","Os01g0293800","Hypothetical protein && - && -"]
[1,10719569,10719647,79,6,0.496031956067023,0.261994605632397,0.234037350434626,35.0487715249325,"CHG","1:10718357:10720357","CGI_shore"]
[1,10743992,10744091,100,18,0.0420791384356325,0.229102868645948,-0.187023730210315,-95.8403922070362,"CG","1:10720358:10744666","CGI"]
[1,10868304,10868453,150,65,0.0464262912938819,0.00541920797487387,0.041007083319008,307.194959799399,"CHH","1:10851884:10902292","CGI"]
[1,10907032,10907173,142,18,0.0539772964664124,0.361879784193301,-0.307902487726888,-107.399604365849,"CG","1:10905702:10907702","CGI_shore"]
[1,10907032,10907173,142,18,0.0539772964664124,0.361879784193301,-0.307902487726888,-107.399604365849,"CG","1:10906749:10907128","CGI"]
[1,10907032,10907173,142,18,0.0539772964664124,0.361879784193301,-0.307902487726888,-107.399604365849,"CG","1:10907128:10909129","CGI_shore"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","1:10908330:10910330","CGI_shore"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","Os01g0297700","promoter","USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 5","Protein of unknown function DUF6, transmembrane domain containing protein && sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana OX=3702 GN=At1g09380 PE=2 SV=1 && PF00892:EamA-like transporter family"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","1:10909511:10911511","CGI_shore"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","1:10910331:10911083","CGI"]
[1,10915989,10916230,242,84,0.288193605722315,0.125595603795275,0.16259800192704,401.813591157903,"CHH","Os01g0297950","promoter","Os01g0297950","Hypothetical protein && sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana OX=3702 GN=At1g09380 PE=2 SV=1 && -"]
[1,10915989,10916230,242,84,0.288193605722315,0.125595603795275,0.16259800192704,401.813591157903,"CHH","1:10914433:10916434","CGI_shore"]
[1,11052253,11052420,168,50,0.275310585980718,0.137819751736864,0.137490834243853,254.02933822806,"CHH","1:11051442:11053442","CGI_shore"]
[1,11052933,11053345,413,100,0.320988228909689,0.142451981330922,0.178536247578767,560.039109285369,"CHH","1:11051442:11053442","CGI_shore"]
[1,11091653,11091792,140,43,0.103202255613362,0.0420776683353818,0.0611245872779797,198.764260675984,"CHH","Os01g0301700","intron","Os01g0301700","Tetratricopeptide-like helical domain containing protein && sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g02370 PE=2 SV=1 && -"]
[1,11091653,11091792,140,43,0.103202255613362,0.0420776683353818,0.0611245872779797,198.764260675984,"CHH","1:11091697:11093697","CGI_shore"]
[1,11138558,11138637,80,9,0.414984693922412,0.75765313183101,-0.342668437908598,-44.0861362283251,"CG","1:11138205:11138707","CGI"]
[1,11191977,11192142,166,49,0.0773869319304801,0.0261235361379522,0.0512633957925279,252.450570805913,"CG","1:11191685:11192143","CGI"]
[1,11191977,11192142,166,49,0.0773869319304801,0.0261235361379522,0.0512633957925279,252.450570805913,"CG","Os01g0302800","exon","Os01g0302800","Conserved hypothetical protein && - && -"]
[1,11208231,11208321,91,32,0.209031598147707,0.061348340841587,0.14768325730612,174.328015042488,"CHH","1:11207963:11209653","CGI"]
[1,11208231,11208321,91,32,0.209031598147707,0.061348340841587,0.14768325730612,174.328015042488,"CHH","Os01g0303100","promoter","Os01g0303100","Similar to Chitinase precursor (EC 3.2.1.17) && sp|P23472|CHLY_HEVBR Hevamine-A OS=Hevea brasiliensis OX=3981 PE=1 SV=2 && PF00704:Glycosyl hydrolases family 18"]
[1,11211067,11211127,61,21,0.0861113247904917,0.0287851958017632,0.0573261289887285,117.866556632755,"CHH","1:11209630:11211630","CGI_shore"]
[1,11211067,11211127,61,21,0.0861113247904917,0.0287851958017632,0.0573261289887285,117.866556632755,"CHH","1:11209653:11211654","CGI_shore"]
[1,11211067,11211127,61,21,0.0861113247904917,0.0287851958017632,0.0573261289887285,117.866556632755,"CHH","Os01g0303200","promoter","Os01g0303200","Conserved hypothetical protein && sp|Q6TEP1|F91A1_DANRE Protein FAM91A1 OS=Danio rerio OX=7955 GN=fam91a1 PE=2 SV=2 && PF14648:FAM91 C-terminus|PF14647:FAM91 N-terminus"]
[1,11307566,11307622,57,29,0.482801222035769,0.738847648544325,-0.256046426508556,-145.743516110633,"CG","Os01g0304500","intron","Os01g0304500","Hypothetical conserved gene && - && -"]
[1,11307566,11307622,57,29,0.482801222035769,0.738847648544325,-0.256046426508556,-145.743516110633,"CG","1:11303124:11308158","CGI"]
[1,11340125,11340178,54,16,0.158145025951275,0.0187724642710655,0.139372561680209,118.545911122076,"CHH","1:11338700:11340700","CGI_shore"]
[1,11431274,11431436,163,68,0.241875881951958,0.118484159178661,0.123391722773297,344.918541075082,"CHH","1:11430319:11432112","CGI"]
[1,11431274,11431436,163,68,0.241875881951958,0.118484159178661,0.123391722773297,344.918541075082,"CHH","Os01g0306900","promoter","Os01g0306900","Protein of unknown function DUF789 family protein && - && PF05623:Protein of unknown function (DUF789)"]
[1,11434295,11434508,214,46,0.229409042739839,0.112572159360778,0.116836883379061,227.359046205125,"CHH","1:11434141:11436141","CGI_shore"]
[1,11502814,11502877,64,17,0.382143300704677,0.209350085243996,0.172793215460681,116.415262428979,"CHH","Os01g0307624","utr3","Os01g0307624","Conserved hypothetical protein && - && -"]
[1,11502814,11502877,64,17,0.382143300704677,0.209350085243996,0.172793215460681,116.415262428979,"CHH","Os01g0307624","exon","Os01g0307624","Conserved hypothetical protein && - && -"]
[1,11502814,11502877,64,17,0.382143300704677,0.209350085243996,0.172793215460681,116.415262428979,"CHH","1:11502296:11504297","CGI_shore"]
[1,11524411,11524469,59,21,0.123234456247222,0.0407656051470899,0.0824688511001321,99.5006592456568,"CHH","1:11523044:11525006","CGI"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11558836:11560837","CGI_shore"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11559110:11559481","CGI"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11559481:11561482","CGI_shore"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11559543:11561543","CGI_shore"]
[1,11566343,11566439,97,17,0.582428899972321,0.854158073049694,-0.271729173077373,-68.238454797414,"CG","1:11565320:11568135","CGI"]
[1,11645416,11645556,141,52,0.181408976773294,0.0965631474568239,0.08484582931647,215.939321315664,"CHH","1:11645325:11647325","CGI_shore"]
[1,11691287,11691423,137,23,0.362518419511934,0.0373811804307521,0.325137239081182,150.030948411172,"CHH","1:11691038:11693039","CGI_shore"]
[1,11720261,11720324,64,23,0.0862197958501824,0.0422321669039076,0.0439876289462748,123.825116765154,"CHH","1:11713648:11725499","CGI"]
[1,11740549,11740690,142,36,0.0222851571423342,0.139442058324114,-0.11715690118178,-177.011263575365,"CHH","1:11739455:11741455","CGI_shore"]
[1,11740549,11740690,142,36,0.0222851571423342,0.139442058324114,-0.11715690118178,-177.011263575365,"CHH","Os01g0312500","promoter","PECTIN METHYLESTERASE 3","Similar to Pectinesterase && sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis OX=2711 GN=PECS-1.1 PE=2 SV=1 && PF01095:Pectinesterase"]
[1,11781346,11781474,129,56,0.130717300675286,0.0400033506952645,0.0907139499800217,297.198144020761,"CHH","1:11781190:11783190","CGI_shore"]
[1,11781346,11781474,129,56,0.130717300675286,0.0400033506952645,0.0907139499800217,297.198144020761,"CHH","1:11779502:11781503","CGI_shore"]
[1,11797715,11797989,275,81,0.735128504321848,0.574786153850438,0.16034235047141,420.646534027608,"CG","1:11792769:11803806","CGI"]
[1,11862949,11863322,374,78,0.301607541904624,0.136719130868105,0.164888411036519,407.149048848451,"CHH","1:11862651:11864652","CGI_shore"]
[1,11862949,11863322,374,78,0.301607541904624,0.136719130868105,0.164888411036519,407.149048848451,"CHH","1:11861836:11863836","CGI_shore"]
[1,12079092,12079199,108,47,0.369879597348455,0.241569724272914,0.128309873075541,214.013119024906,"CHH","1:12078276:12080276","CGI_shore"]
[1,12230381,12230760,380,56,0.322761692041377,0.0995004129838476,0.223261279057529,347.674767004111,"CHH","1:12228843:12230843","CGI_shore"]
[1,12230381,12230760,380,56,0.322761692041377,0.0995004129838476,0.223261279057529,347.674767004111,"CHH","1:12229244:12231245","CGI_shore"]
[1,12230381,12230760,380,56,0.322761692041377,0.0995004129838476,0.223261279057529,347.674767004111,"CHH","1:12230362:12232362","CGI_shore"]
[1,12231043,12231103,61,17,0.252236955066742,0.0733130727504127,0.178923882316329,78.5542341881842,"CG","1:12229244:12231245","CGI_shore"]
[1,12231043,12231103,61,17,0.252236955066742,0.0733130727504127,0.178923882316329,78.5542341881842,"CG","1:12230362:12232362","CGI_shore"]
[1,12231043,12231103,61,17,0.252236955066742,0.0733130727504127,0.178923882316329,78.5542341881842,"CG","1:12230844:12231233","CGI"]
[1,12232996,12233095,100,30,0.106547749823134,0.250517136036373,-0.143969386213239,-154.944311169845,"CHH","1:12231233:12233234","CGI_shore"]
[1,12232996,12233095,100,30,0.106547749823134,0.250517136036373,-0.143969386213239,-154.944311169845,"CHH","1:12232673:12234674","CGI_shore"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","1:12262813:12264813","CGI_shore"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","Os01g0321800","promoter","Os01g0321800","Gas vesicle protein GvpC repeat containing protein && - && PF10187:N-terminal domain of NEFA-interacting nuclear protein NIP30"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","Os01g0321700","promoter","Os01g0321700","Similar to predicted protein && sp|Q05AS9|SC23A_XENTR Protein transport protein Sec23A OS=Xenopus tropicalis OX=8364 GN=sec23a PE=2 SV=1 && PF08033:Sec23/Sec24 beta-sandwich domain|PF04815:Sec23/Sec24 helical domain|PF04810:Sec23/Sec24 zinc finger|PF04811:Sec23/Sec24 trunk domain"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","1:12263325:12265326","CGI_shore"]
[1,12363064,12363301,238,19,0.379634741081255,0.823418098980584,-0.443783357899329,-116.305265481716,"CG","1:12361734:12363735","CGI_shore"]
[1,12363064,12363301,238,19,0.379634741081255,0.823418098980584,-0.443783357899329,-116.305265481716,"CG","Os01g0323775","promoter","Os01g0323775","Hypothetical protein && sp|P93438|METK2_ORYSJ S-adenosylmethionine synthase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SAM2 PE=2 SV=1 && PF00438:S-adenosylmethionine synthetase, N-terminal domain|PF02773:S-adenosylmethionine synthetase, C-terminal domain|PF02772:S-adenosylmethionine synthetase, central domain"]
[1,12363064,12363301,238,19,0.379634741081255,0.823418098980584,-0.443783357899329,-116.305265481716,"CG","1:12362197:12364197","CGI_shore"]
[1,12408065,12408115,51,10,0.133397408021054,0.502799438636352,-0.369402030615298,-51.0820309316729,"CHG","1:12406732:12409115","CGI"]
[1,12408065,12408115,51,10,0.133397408021054,0.502799438636352,-0.369402030615298,-51.0820309316729,"CHG","Os01g0324400","promoter","Os01g0324400","Hypothetical conserved gene && - && -"]
[1,12431275,12431362,88,20,0.0986657261400456,0.00664448357200447,0.0920212425680411,85.6881457284866,"CHH","1:12430360:12431340","CGI"]
[1,12431275,12431362,88,20,0.0986657261400456,0.00664448357200447,0.0920212425680411,85.6881457284866,"CHH","1:12431340:12433341","CGI_shore"]
[1,12526670,12526776,107,31,0.0834222425172473,0.0131291913772318,0.0702930511400155,124.597973888278,"CHH","1:12525820:12527820","CGI_shore"]
[1,12526670,12526776,107,31,0.0834222425172473,0.0131291913772318,0.0702930511400155,124.597973888278,"CHH","1:12526675:12528675","CGI_shore"]
[1,12544807,12544877,71,22,0.164378198179574,0.0291404842999234,0.13523771387965,114.257857026218,"CHH","1:12543139:12545139","CGI_shore"]
[1,12544807,12544877,71,22,0.164378198179574,0.0291404842999234,0.13523771387965,114.257857026218,"CHH","1:12543254:12545255","CGI_shore"]
[1,12554394,12554444,51,20,0.130302053629686,0.0479314470246315,0.0823706066050546,93.4563660901344,"CHH","Os01g0327000","exon","class III peroxidase 14","Similar to Class III peroxidase 14 && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && -"]
[1,12554394,12554444,51,20,0.130302053629686,0.0479314470246315,0.0823706066050546,93.4563660901344,"CHH","Os01g0327000","utr3","class III peroxidase 14","Similar to Class III peroxidase 14 && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && -"]
[1,12554394,12554444,51,20,0.130302053629686,0.0479314470246315,0.0823706066050546,93.4563660901344,"CHH","1:12552521:12554521","CGI_shore"]
[1,12563694,12563764,71,16,0.222024287866021,0.121083703483791,0.100940584382231,82.1027854667904,"CHH","Os01g0327100","promoter","class III peroxidase 15","Haem peroxidase family protein && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12563694,12563764,71,16,0.222024287866021,0.121083703483791,0.100940584382231,82.1027854667904,"CHH","1:12562380:12564380","CGI_shore"]
[1,12565514,12565676,163,58,0.273677861085062,0.169749513323082,0.103928347761979,265.888572502162,"CHH","Os01g0327250","intron","Os01g0327250","Hypothetical protein && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12565514,12565676,163,58,0.273677861085062,0.169749513323082,0.103928347761979,265.888572502162,"CHH","Os01g0327100","intron","class III peroxidase 15","Haem peroxidase family protein && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12565514,12565676,163,58,0.273677861085062,0.169749513323082,0.103928347761979,265.888572502162,"CHH","1:12564600:12566601","CGI_shore"]
[1,12577402,12577509,108,11,0.0990179568555273,0.690004809183304,-0.590986852327777,-93.6390209554599,"CG","1:12575764:12577764","CGI_shore"]
[1,12577402,12577509,108,11,0.0990179568555273,0.690004809183304,-0.590986852327777,-93.6390209554599,"CG","Os01g0327400","promoter","class III peroxidase 16, Peroxidase 1","Similar to Peroxidase (Fragment) && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12577436,12577619,184,45,0.0148347742235908,0.215624148388494,-0.200789374164903,-344.933670500145,"CHH","1:12575764:12577764","CGI_shore"]
[1,12577436,12577619,184,45,0.0148347742235908,0.215624148388494,-0.200789374164903,-344.933670500145,"CHH","Os01g0327400","promoter","class III peroxidase 16, Peroxidase 1","Similar to Peroxidase (Fragment) && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12621079,12621136,58,9,0.256690740411,0.506256103918328,-0.249565363507328,-36.8867621510039,"CHG","1:12616775:12622024","CGI"]
[1,12639989,12640160,172,28,0.596740883135465,0.336301216227856,0.260439666907609,157.391642362727,"CG","1:12638458:12640458","CGI_shore"]
[1,12639989,12640160,172,28,0.596740883135465,0.336301216227856,0.260439666907609,157.391642362727,"CG","Os01g0328300","exon","F-box protein 9","Similar to cDNA clone:J033084P10, full insert sequence && - && -"]
[1,12639989,12640160,172,28,0.596740883135465,0.336301216227856,0.260439666907609,157.391642362727,"CG","1:12639866:12640184","CGI"]
[1,12685264,12685462,199,55,0.146366241710788,0.0226082642278773,0.12375797748291,317.321867031017,"CHH","1:12683360:12685361","CGI_shore"]
[1,12685264,12685462,199,55,0.146366241710788,0.0226082642278773,0.12375797748291,317.321867031017,"CHH","Os01g0329000","promoter","Os01g0329000","Phospholipid/glycerol acyltransferase domain containing protein && sp|Q9SYJ2|GPAT3_ARATH Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GPAT3 PE=2 SV=1 && -"]
[1,12685264,12685462,199,55,0.146366241710788,0.0226082642278773,0.12375797748291,317.321867031017,"CHH","1:12683873:12685873","CGI_shore"]
[1,12698427,12698561,135,24,0.0379604513305829,0.119809846309749,-0.0818493949791656,-120.802350779355,"CHH","ENSRNA049472779","promoter","U2","U2 spliceosomal RNA && sp|F4J3H7|ZRK7_ARATH Serine/threonine-protein kinase ZRK7 OS=Arabidopsis thaliana OX=3702 GN=ZRK7 PE=2 SV=1 && -"]
[1,12737038,12737088,51,5,0.160291929243011,0.382528938569843,-0.222237009326832,-23.2552602102434,"CG","1:12735198:12737198","CGI_shore"]
[1,12737038,12737088,51,5,0.160291929243011,0.382528938569843,-0.222237009326832,-23.2552602102434,"CG","Os01g0329900","intron","GDSL ESTERASE/LIPASE PROTEIN 14","Similar to Lipase homolog (Fragment) && sp|O80522|GDL2_ARATH GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana OX=3702 GN=At1g09390 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,12757432,12757758,327,115,0.155193615033382,0.027328374099133,0.127865240934249,727.598170240172,"CHH","1:12752039:12761858","CGI"]
[1,12758132,12758247,116,20,0.153711557957682,0.00920044366787363,0.144511114289809,120.930312132623,"CHH","1:12752039:12761858","CGI"]
[1,12760362,12760592,231,55,0.436251532417677,0.232056104191592,0.204195428226084,353.375868087552,"CHH","1:12752039:12761858","CGI"]
[1,12809128,12809270,143,22,0.173402155665837,0.0274575477730444,0.145944607892793,124.34824911191,"CHH","1:12808533:12809914","CGI"]
[1,12809128,12809270,143,22,0.173402155665837,0.0274575477730444,0.145944607892793,124.34824911191,"CHH","Os01g0331100","intron","GDSL ESTERASE/LIPASE PROTEIN 16","Similar to Alpha-L-fucosidase 2 && sp|Q9FXB6|LIP4_ARATH GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana OX=3702 GN=LIP4 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,12816062,12816222,161,7,0.59537469974124,0.032100868595105,0.563273831146135,48.7710894985821,"CHG","1:12815389:12817389","CGI_shore"]
[1,12816083,12816269,187,35,0.171707770573017,0.00693671751252343,0.164771053060494,202.682425057057,"CHH","1:12815389:12817389","CGI_shore"]
[1,12881930,12881990,61,20,0.158702801362979,0.091780998716053,0.0669218026469265,94.3476878697863,"CHH","1:12881852:12882450","CGI"]
[1,12881930,12881990,61,20,0.158702801362979,0.091780998716053,0.0669218026469265,94.3476878697863,"CHH","Os01g0332200","intron","GIBBERELLIN 2-OXIDASE 2","GA 2-oxidase2, GA metabolis && sp|Q5ZA21|G2OX2_ORYSJ Gibberellin 2-beta-dioxygenase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GA2OX2 PE=3 SV=1 && PF14226:non-haem dioxygenase in morphine synthesis N-terminal|PF03171:2OG-Fe(II) oxygenase superfamily"]
[1,12891720,12891774,55,14,0.156319201557105,0.0399264635982637,0.116392737958842,70.6482473754468,"CHH","1:12891652:12893653","CGI_shore"]
[1,12904095,12904167,73,21,0.179747741211221,0.0435996215973547,0.136148119613866,131.059141285682,"CHH","1:12904071:12904445","CGI"]
[1,12904095,12904167,73,21,0.179747741211221,0.0435996215973547,0.136148119613866,131.059141285682,"CHH","Os01g0332500","intron","Os01g0332500","Similar to Serine carboxypeptidase II-like protein && sp|Q5W727|SCP26_ORYSJ Serine carboxypeptidase-like 26 OS=Oryza sativa subsp. japonica OX=39947 GN=SCP26 PE=2 SV=1 && PF00450:Serine carboxypeptidase"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","1:12907548:12909548","CGI_shore"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","Os01g0332700","exon","Os01g0332700","Similar to predicted protein && - && -"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","Os01g0332500","intron","Os01g0332500","Similar to Serine carboxypeptidase II-like protein && sp|Q5W727|SCP26_ORYSJ Serine carboxypeptidase-like 26 OS=Oryza sativa subsp. japonica OX=39947 GN=SCP26 PE=2 SV=1 && PF00450:Serine carboxypeptidase"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","1:12909549:12910714","CGI"]
[1,12911669,12911786,118,49,0.112200775024112,0.0424090883934684,0.0697916866306432,247.345670896732,"CHH","1:12910714:12912715","CGI_shore"]
[1,12911669,12911786,118,49,0.112200775024112,0.0424090883934684,0.0697916866306432,247.345670896732,"CHH","Os01g0332500","intron","Os01g0332500","Similar to Serine carboxypeptidase II-like protein && sp|Q5W727|SCP26_ORYSJ Serine carboxypeptidase-like 26 OS=Oryza sativa subsp. japonica OX=39947 GN=SCP26 PE=2 SV=1 && PF00450:Serine carboxypeptidase"]
[1,12911669,12911786,118,49,0.112200775024112,0.0424090883934684,0.0697916866306432,247.345670896732,"CHH","Os01g0332700","promoter","Os01g0332700","Similar to predicted protein && - && -"]
[1,12932262,12932373,112,38,0.219380869434067,0.140313428380159,0.0790674410539071,170.810344201493,"CHH","1:12930279:12932279","CGI_shore"]
[1,12932262,12932373,112,38,0.219380869434067,0.140313428380159,0.0790674410539071,170.810344201493,"CHH","1:12930694:12932694","CGI_shore"]
[1,12932262,12932373,112,38,0.219380869434067,0.140313428380159,0.0790674410539071,170.810344201493,"CHH","1:12932280:12932484","CGI"]
[1,12933521,12933721,201,66,0.256165787354488,0.14050413350159,0.115661653852898,306.081484707133,"CHH","1:12932484:12934485","CGI_shore"]
[1,12933521,12933721,201,66,0.256165787354488,0.14050413350159,0.115661653852898,306.081484707133,"CHH","1:12932695:12936034","CGI"]
[1,12934016,12934129,114,51,0.235747309986829,0.113828326264871,0.121918983721959,239.763477819272,"CHH","1:12932484:12934485","CGI_shore"]
[1,12934016,12934129,114,51,0.235747309986829,0.113828326264871,0.121918983721959,239.763477819272,"CHH","1:12932695:12936034","CGI"]
[1,12945495,12945606,112,27,0.147393456604277,0.0103501344314743,0.137043322172803,120.287787271313,"CHH","1:12943684:12945684","CGI_shore"]
[1,13000011,13000082,72,15,0.764631855815597,0.508523615920107,0.256108239895491,68.3567465787532,"CG","1:12998913:13001862","CGI"]
[1,13005327,13005377,51,25,0.0910867978278997,0.0401711567184945,0.0509156411094052,113.889947613944,"CHH","1:13004296:13006297","CGI_shore"]
[1,13005436,13005511,76,26,0.0794159901857913,0.0228323721305856,0.0565836180552058,134.22374623696,"CHH","1:13004296:13006297","CGI_shore"]
[1,13042397,13042583,187,39,0.290090706899336,0.0295722171261738,0.260518489773162,217.761861064803,"CHH","1:13042371:13044372","CGI_shore"]
[1,13042397,13042583,187,39,0.290090706899336,0.0295722171261738,0.260518489773162,217.761861064803,"CHH","1:13040834:13042835","CGI_shore"]
[1,13058461,13058575,115,45,0.082770280884947,0.045194088792145,0.037576192092802,183.524557327307,"CHH","1:13056907:13058908","CGI_shore"]
[1,13058461,13058575,115,45,0.082770280884947,0.045194088792145,0.037576192092802,183.524557327307,"CHH","1:13058016:13060017","CGI_shore"]
[1,13201572,13201722,151,35,0.265475189563726,0.0256883933490839,0.239786796214642,216.130587025688,"CHH","Os01g0337160","promoter","Os01g0337160","Conserved hypothetical protein && - && -"]
[1,13201572,13201722,151,35,0.265475189563726,0.0256883933490839,0.239786796214642,216.130587025688,"CHH","1:13199842:13201842","CGI_shore"]
[1,13201572,13201722,151,35,0.265475189563726,0.0256883933490839,0.239786796214642,216.130587025688,"CHH","1:13200883:13202884","CGI_shore"]
[1,13231959,13232026,68,15,0.272640029877452,0.498248529268217,-0.225608499390764,-59.9836326885685,"CG","1:13232019:13234019","CGI_shore"]
[1,13231959,13232026,68,15,0.272640029877452,0.498248529268217,-0.225608499390764,-59.9836326885685,"CG","1:13220190:13232045","CGI"]
[1,13233631,13233749,119,39,0.175002131329436,0.0502633418394198,0.124738789490016,219.82273553721,"CHH","1:13232019:13234019","CGI_shore"]
[1,13233631,13233749,119,39,0.175002131329436,0.0502633418394198,0.124738789490016,219.82273553721,"CHH","1:13232045:13234046","CGI_shore"]
[1,13325565,13325819,255,76,0.203895400787135,0.0533692082801311,0.150526192507004,402.538440313209,"CHH","Os01g0338600","promoter","Os01g0338600","Similar to cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes && - && -"]
[1,13325565,13325819,255,76,0.203895400787135,0.0533692082801311,0.150526192507004,402.538440313209,"CHH","1:13323990:13325991","CGI_shore"]
[1,13325565,13325819,255,76,0.203895400787135,0.0533692082801311,0.150526192507004,402.538440313209,"CHH","1:13324848:13328322","CGI"]
[1,13327423,13327563,141,59,0.177349103339377,0.0951495290234943,0.0821995743158826,269.815376243247,"CHH","1:13324848:13328322","CGI"]
[1,13327756,13327988,233,84,0.147482148855363,0.0542187724022355,0.0932633764531279,378.259466855421,"CHH","1:13324848:13328322","CGI"]
[1,13328511,13328692,182,45,0.118609200306139,0.0270379353178591,0.0915712649882797,260.055723211012,"CHH","1:13328322:13330323","CGI_shore"]
[1,13338411,13338526,116,34,0.0122862819652489,0.10091963176441,-0.0886333497991612,-211.505752023264,"CHH","1:13337508:13339508","CGI_shore"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","1:13342478:13344479","CGI_shore"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","Os01g0339600","promoter","Os01g0339600","Proteasome assembly chaperone 3 domain containing protein && - && -"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","1:13343077:13345851","CGI"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","Os01g0339500","intron","NAC DOMAIN-CONTAINING PROTEIN 30","Similar to No apical meristem protein && - && -"]
[1,13378670,13378976,307,64,0.397674770112278,0.182742249497277,0.214932520615001,357.728476111111,"CHH","1:13377007:13379007","CGI_shore"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","1:13423499:13425499","CGI_shore"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","1:13424614:13426615","CGI_shore"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","Os01g0341000","promoter","Os01g0341000","Conserved hypothetical protein && - && -"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","1:13424637:13426637","CGI_shore"]
[1,13430991,13431097,107,18,0.480602046679817,0.20630931072253,0.274292735957287,89.4520275013172,"CHG","1:13429863:13431864","CGI_shore"]
[1,13443856,13443927,72,22,0.148868988919088,0.0562465231378107,0.0926224657812774,120.982654697623,"CHH","1:13437036:13445754","CGI"]
[1,13445444,13445553,110,23,0.269907214764995,0.404500880866566,-0.134593666101571,-110.075708254822,"CG","1:13437036:13445754","CGI"]
[1,13445444,13445553,110,23,0.269907214764995,0.404500880866566,-0.134593666101571,-110.075708254822,"CG","1:13445332:13447332","CGI_shore"]
[1,13453185,13453247,63,24,0.217494195207171,0.339031313799358,-0.121537118592186,-98.916552354739,"CG","1:13452102:13453620","CGI"]
[1,13471217,13471309,93,30,0.243097492123107,0.11880255904787,0.124294933075237,156.477867178886,"CHH","1:13467867:13473166","CGI"]
[1,13473701,13473877,177,45,0.277587429066837,0.129868173707242,0.147719255359595,217.824557378587,"CHH","1:13473166:13475167","CGI_shore"]
[1,13537182,13537290,109,43,0.144472051977301,0.0622771337851399,0.0821949181921607,213.545335564524,"CHH","1:13537065:13537310","CGI"]
[1,13589142,13589456,315,77,0.5625111513842,0.850613855075974,-0.288102703691773,-488.337356809224,"CG","1:13589107:13590837","CGI"]
[1,13589142,13589456,315,77,0.5625111513842,0.850613855075974,-0.288102703691773,-488.337356809224,"CG","1:13589244:13591244","CGI_shore"]
[1,13599283,13599358,76,21,0.203327074185398,0.0877279988923307,0.115599075293068,99.6810636837833,"CHH","1:13598705:13600705","CGI_shore"]
[1,13607506,13607557,52,16,0.214419569936368,0.0795509151163878,0.13486865481998,80.3757434579893,"CHH","1:13607410:13609410","CGI_shore"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","Os01g0344620","utr3","Os01g0344620","Hypothetical gene && - && -"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","Os01g0344620","exon","Os01g0344620","Hypothetical gene && - && -"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","1:13609521:13611521","CGI_shore"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","1:13609755:13611756","CGI_shore"]
[1,13668968,13669064,97,40,0.102280442089817,0.0485271999986109,0.0537532420912062,174.919638370397,"CHH","1:13668498:13670498","CGI_shore"]
[1,13677808,13677992,185,60,0.130552253092107,0.0627609334209012,0.0677913196712059,295.127946013093,"CHH","1:13673559:13682170","CGI"]
[1,13710412,13710495,84,15,0.0789792123857062,0.425472819916026,-0.34649360753032,-93.2181205786963,"CHG","1:13708548:13710549","CGI_shore"]
[1,13710412,13710495,84,15,0.0789792123857062,0.425472819916026,-0.34649360753032,-93.2181205786963,"CHG","1:13710349:13711075","CGI"]
[1,13772498,13772673,176,47,0.158194695545355,0.0751896201822265,0.0830050753631289,210.845463478138,"CHH","1:13771613:13773613","CGI_shore"]
[1,13772498,13772673,176,47,0.158194695545355,0.0751896201822265,0.0830050753631289,210.845463478138,"CHH","1:13771954:13773955","CGI_shore"]
[1,13780621,13780807,187,48,0.224024630317244,0.067642830145172,0.156381800172072,284.006119434064,"CHH","Os01g0346700","promoter","Os01g0346700","Conserved hypothetical protein && - && -"]
[1,13780621,13780807,187,48,0.224024630317244,0.067642830145172,0.156381800172072,284.006119434064,"CHH","1:13779921:13781922","CGI_shore"]
[1,13805843,13805982,140,23,0.160595309125843,0.0145770703800097,0.146018238745834,122.832558045645,"CHH","1:13804073:13806073","CGI_shore"]
[1,13805843,13805982,140,23,0.160595309125843,0.0145770703800097,0.146018238745834,122.832558045645,"CHH","Os01g0347100","promoter","Os01g0347100","Protein of unknown function DUF1399 family protein && - && -"]
[1,13805843,13805982,140,23,0.160595309125843,0.0145770703800097,0.146018238745834,122.832558045645,"CHH","1:13805166:13807167","CGI_shore"]
[1,13811631,13811789,159,54,0.163740566109372,0.068138378150624,0.0956021879587481,290.966154719475,"CHH","Os01g0347200","promoter","Os01g0347200","Conserved hypothetical protein && - && -"]
[1,13837202,13837379,178,51,0.0169586999196974,0.0845831076493194,-0.067624407729622,-252.93717925922,"CHH","1:13836081:13838081","CGI_shore"]
[1,13844795,13844974,180,46,0.461279208226094,0.255700754293307,0.205578453932787,276.869583472808,"CHH","1:13844712:13846713","CGI_shore"]
[1,13856275,13856372,98,27,0.185868036959505,0.0882150823509258,0.0976529546085789,123.925581917995,"CHH","1:13854318:13856319","CGI_shore"]
[1,13856275,13856372,98,27,0.185868036959505,0.0882150823509258,0.0976529546085789,123.925581917995,"CHH","1:13856102:13858102","CGI_shore"]
[1,13856275,13856372,98,27,0.185868036959505,0.0882150823509258,0.0976529546085789,123.925581917995,"CHH","1:13856153:13858154","CGI_shore"]
[1,13858874,13859084,211,69,0.198789888471772,0.0877713700599112,0.111018518411861,363.250069390557,"CHH","Os01g0348000","promoter","Os01g0348000","Similar to Papain-like cysteine proteinase (Fragment) && - && -"]
[1,13858874,13859084,211,69,0.198789888471772,0.0877713700599112,0.111018518411861,363.250069390557,"CHH","1:13858103:13875888","CGI"]
[1,13884314,13884394,81,27,0.125520264044423,0.0154828183690858,0.110037445675338,181.888835132202,"CHH","1:13883585:13885585","CGI_shore"]
[1,13901321,13901398,78,21,0.069680620739768,0.0213054523906261,0.0483751683491419,115.032831589965,"CHH","1:13900041:13902042","CGI_shore"]
[1,13901321,13901398,78,21,0.069680620739768,0.0213054523906261,0.0483751683491419,115.032831589965,"CHH","Os01g0348800","promoter","Os01g0348800","Similar to Salt-stress induced protein (Salt protein) && sp|A2WPN7|SALT_ORYSI Salt stress-induced protein OS=Oryza sativa subsp. indica OX=39946 GN=SALT PE=1 SV=2 && PF01419:Jacalin-like lectin domain"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","Os01g0349000","exon","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","Os01g0349000","utr5","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","1:13911469:13912790","CGI"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","1:13912280:13914280","CGI_shore"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","Os01g0349000","exon","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","Os01g0349000","utr5","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","1:13911469:13912790","CGI"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","1:13912280:13914280","CGI_shore"]
[1,13913662,13913786,125,29,0.167450489739676,0.0862647058135247,0.0811857839261509,124.412935395891,"CHH","1:13912280:13914280","CGI_shore"]
[1,13913662,13913786,125,29,0.167450489739676,0.0862647058135247,0.0811857839261509,124.412935395891,"CHH","1:13912790:13914791","CGI_shore"]
[1,13913662,13913786,125,29,0.167450489739676,0.0862647058135247,0.0811857839261509,124.412935395891,"CHH","Os01g0349000","promoter","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13937734,13937906,173,60,0.1758901446301,0.0941659754922349,0.0817241691378654,287.44641647573,"CHH","1:13937536:13939537","CGI_shore"]
[1,13939301,13939470,170,45,0.299328472536009,0.172693788723007,0.126634683813002,223.954729240925,"CHH","1:13937536:13939537","CGI_shore"]
[1,13939301,13939470,170,45,0.299328472536009,0.172693788723007,0.126634683813002,223.954729240925,"CHH","Os01g0349800","promoter","Os01g0349800","Similar to Cytochrome P450 && sp|F4IK45|C70B2_ARATH Cytochrome P450 709B2 OS=Arabidopsis thaliana OX=3702 GN=CYP709B2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,13940936,13941133,198,57,0.255939084585633,0.138401946242483,0.11753713834315,284.704723755631,"CHH","Os01g0349800","promoter","Os01g0349800","Similar to Cytochrome P450 && sp|F4IK45|C70B2_ARATH Cytochrome P450 709B2 OS=Arabidopsis thaliana OX=3702 GN=CYP709B2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,13940936,13941133,198,57,0.255939084585633,0.138401946242483,0.11753713834315,284.704723755631,"CHH","1:13939499:13941499","CGI_shore"]
[1,13945476,13945746,271,85,0.148502866501933,0.0488600445367357,0.0996428219651976,430.329911576748,"CHH","1:13944413:13946414","CGI_shore"]
[1,13945476,13945746,271,85,0.148502866501933,0.0488600445367357,0.0996428219651976,430.329911576748,"CHH","1:13945220:13947221","CGI_shore"]
[1,13977406,13977486,81,18,0.249829596994082,0.0918183469785466,0.158011250015535,83.2342604251734,"CHH","1:13976032:13978032","CGI_shore"]
[1,14032844,14032938,95,27,0.046067527450961,0.00891294333293664,0.0371545841180244,111.833225284607,"CHH","1:14031887:14033888","CGI_shore"]
[1,14032844,14032938,95,27,0.046067527450961,0.00891294333293664,0.0371545841180244,111.833225284607,"CHH","1:14032648:14034648","CGI_shore"]
[1,14154273,14154327,55,4,0.0730931625977318,0.24320551363178,-0.170112351034048,-21.5160845837265,"CHG","1:14153675:14155676","CGI_shore"]
[1,14251363,14251563,201,41,0.210117632938831,0.00772734431786815,0.202390288620963,223.730508822997,"CHH","1:14250114:14253136","CGI"]
[1,14251363,14251563,201,41,0.210117632938831,0.00772734431786815,0.202390288620963,223.730508822997,"CHH","Os01g0354700","promoter","Os01g0354700","Pre-mRNA cleavage complex II Clp1 domain containing protein && sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana OX=3702 GN=At5g11010 PE=1 SV=1 && PF16575:mRNA cleavage and polyadenylation factor CLP1 P-loop"]
[1,14253756,14253914,159,32,0.304970202244869,0.133211907034819,0.17175829521005,202.192704729775,"CHH","1:14253136:14255137","CGI_shore"]
[1,14253756,14253914,159,32,0.304970202244869,0.133211907034819,0.17175829521005,202.192704729775,"CHH","Os01g0354700","intron","Os01g0354700","Pre-mRNA cleavage complex II Clp1 domain containing protein && sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana OX=3702 GN=At5g11010 PE=1 SV=1 && PF16575:mRNA cleavage and polyadenylation factor CLP1 P-loop"]
[1,14433092,14433338,247,72,0.272380731352034,0.0465309396650816,0.225849791686952,512.872001693904,"CHH","Os01g0356800","intron","endosperm-specific gene 6","Domain of unknown function DUF3406, chloroplast translocase domain containing protein && sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC159 PE=1 SV=1 && PF04548:AIG1 family|PF11886:Translocase of chloroplast 159/132, membrane anchor domain"]
[1,14455631,14455689,59,14,0.171583052157311,0.340707608739179,-0.169124556581868,-77.4887801654421,"CHH","1:14454169:14456170","CGI_shore"]
[1,14458680,14458742,63,15,0.0923182352166974,0.0304207346663721,0.0618975005503253,72.9050515981231,"CHH","Os01g0357400","promoter","ALPHA-AMYLASE 1B","Similar to Alpha-amylase && sp|Q0JMV4|AMYC1_ORYSJ Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica OX=39947 GN=AMY1B PE=2 SV=1 && -"]
[1,14458680,14458742,63,15,0.0923182352166974,0.0304207346663721,0.0618975005503253,72.9050515981231,"CHH","1:14458268:14460268","CGI_shore"]
[1,14470248,14470346,99,25,0.311439400221972,0.143145544829797,0.168293855392176,131.845412191464,"CHH","Os01g0357800","promoter","Os01g0357800","Pentatricopeptide repeat domain containing protein && sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2 && PF13041:PPR repeat family"]
[1,14516526,14516653,128,49,0.331115598030199,0.152436196785874,0.178679401244325,237.1681773976,"CHH","1:14514685:14516685","CGI_shore"]
[1,14516526,14516653,128,49,0.331115598030199,0.152436196785874,0.178679401244325,237.1681773976,"CHH","Os01g0358551","promoter","Os01g0358551","Conserved hypothetical protein && sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS4 PE=2 SV=3 && -"]
[1,14516526,14516653,128,49,0.331115598030199,0.152436196785874,0.178679401244325,237.1681773976,"CHH","1:14515352:14517352","CGI_shore"]
[1,14522113,14522221,109,49,0.156497598966615,0.03145386470784,0.125043734258775,255.156538083375,"CHH","1:14520193:14522145","CGI"]
[1,14522113,14522221,109,49,0.156497598966615,0.03145386470784,0.125043734258775,255.156538083375,"CHH","1:14522145:14524146","CGI_shore"]
[1,14545663,14545766,104,32,0.0704516204890921,2.4119190545362E-3,0.0680397014345559,164.568812364868,"CHH","1:14545500:14547501","CGI_shore"]
[1,14545663,14545766,104,32,0.0704516204890921,2.4119190545362E-3,0.0680397014345559,164.568812364868,"CHH","Os01g0358900","promoter","Os01g0358900","Similar to GDHB glutamate dehydrogenase && sp|A2XMV1|DHE1_ORYSI Glutamate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GDH1 PE=3 SV=2 && -"]
[1,14606401,14606472,72,15,0.206257960709915,0.0669944150168457,0.13926354569307,72.4473596271186,"CHH","1:14604743:14606743","CGI_shore"]
[1,14606401,14606472,72,15,0.206257960709915,0.0669944150168457,0.13926354569307,72.4473596271186,"CHH","1:14605932:14607933","CGI_shore"]
[1,14640986,14641132,147,57,0.17394538596807,0.0311797084268127,0.142765677541258,302.754824900208,"CHH","1:14640587:14642587","CGI_shore"]
[1,14640986,14641132,147,57,0.17394538596807,0.0311797084268127,0.142765677541258,302.754824900208,"CHH","1:14640916:14641504","CGI"]
[1,14658868,14659048,181,59,0.0989288417332858,0.0546347546358424,0.0442940870974434,247.785031078747,"CHH","1:14657876:14659876","CGI_shore"]
[1,14658868,14659048,181,59,0.0989288417332858,0.0546347546358424,0.0442940870974434,247.785031078747,"CHH","1:14658577:14660578","CGI_shore"]
[1,14673356,14673479,124,26,0.175234128378878,0.0795834875914947,0.0956506407873837,123.769112458835,"CHH","1:14672246:14674247","CGI_shore"]
[1,14677998,14678055,58,18,0.50949496083544,0.387024660957846,0.122470299877594,68.3621564920942,"CHH","1:14676370:14678370","CGI_shore"]
[1,14689098,14689156,59,6,0.809534284321613,0.706096908353863,0.10343737596775,21.7668055841041,"CHG","1:14687564:14689565","CGI_shore"]
[1,14689098,14689156,59,6,0.809534284321613,0.706096908353863,0.10343737596775,21.7668055841041,"CHG","1:14688266:14690266","CGI_shore"]
[1,14706630,14706964,335,45,0.367566842995672,0.0386799931446954,0.328886849850977,251.922347497132,"CHH","1:14705862:14707862","CGI_shore"]
[1,14706630,14706964,335,45,0.367566842995672,0.0386799931446954,0.328886849850977,251.922347497132,"CHH","Os01g0361000","promoter","Os01g0361000","Conserved hypothetical protein && - && -"]
[1,14706630,14706964,335,45,0.367566842995672,0.0386799931446954,0.328886849850977,251.922347497132,"CHH","1:14705986:14707987","CGI_shore"]
[1,14748839,14748900,62,24,0.0477978765050799,0.00205942210358161,0.0457384544014983,144.469333821892,"CHH","1:14747521:14749521","CGI_shore"]
[1,14749410,14749526,117,11,0.627007824947537,0.837175365993555,-0.210167541046018,-49.6345759967258,"CG","1:14747521:14749521","CGI_shore"]
[1,14749410,14749526,117,11,0.627007824947537,0.837175365993555,-0.210167541046018,-49.6345759967258,"CG","1:14749522:14750040","CGI"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363600","exon","Os01g0363600","Similar to hydroxyethylthiazole kinase family protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && PF02110:Hydroxyethylthiazole kinase family"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","1:14802880:14804622","CGI"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363500","exon","Os01g0363500","Similar to predicted protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && -"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363500","utr3","Os01g0363500","Similar to predicted protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && -"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363600","intron","Os01g0363600","Similar to hydroxyethylthiazole kinase family protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && PF02110:Hydroxyethylthiazole kinase family"]
[1,14809068,14809165,98,32,0.403808543667779,0.16239966345683,0.241408880210949,168.435558450024,"CHH","Os01g0363900","promoter","WALL-ASSOCIATED KINASE GENE 5","Similar to HASTY && sp|Q0WP44|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana OX=3702 GN=HST1 PE=1 SV=1 && PF08389:Exportin 1-like protein"]
[1,14809068,14809165,98,32,0.403808543667779,0.16239966345683,0.241408880210949,168.435558450024,"CHH","1:14807788:14809788","CGI_shore"]
[1,14809068,14809165,98,32,0.403808543667779,0.16239966345683,0.241408880210949,168.435558450024,"CHH","1:14808734:14810735","CGI_shore"]
[1,14829633,14829810,178,50,0.295241052300508,0.116378975280697,0.178862077019811,259.795539452424,"CHH","1:14829186:14831187","CGI_shore"]
[1,14829633,14829810,178,50,0.295241052300508,0.116378975280697,0.178862077019811,259.795539452424,"CHH","1:14829754:14831754","CGI_shore"]
[1,14830152,14830325,174,51,0.259385699947773,0.0853104271746478,0.174075272773125,301.575609054748,"CHH","1:14829186:14831187","CGI_shore"]
[1,14830152,14830325,174,51,0.259385699947773,0.0853104271746478,0.174075272773125,301.575609054748,"CHH","1:14829754:14831754","CGI_shore"]
[1,14841113,14841275,163,65,0.0967890091594655,0.0250304893600285,0.071758519799437,337.222850707177,"CHH","1:14840833:14842834","CGI_shore"]
[1,14851069,14851140,72,15,0.139779574591758,0.0224879882663667,0.117291586325391,95.5732769595499,"CHH","1:14846025:14853327","CGI"]
[1,14852827,14852909,83,28,0.173434382428749,0.0231934332529459,0.150240949175803,179.420375099962,"CHH","1:14846025:14853327","CGI"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","1:14865423:14871132","CGI"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","1:14871132:14873133","CGI_shore"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","1:14873966:14875966","CGI_shore"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","Os01g0364400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 35","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,14870970,14871031,62,18,0.0142790498929683,0.146799750826388,-0.13252070093342,-93.7646925266224,"CHH","1:14865423:14871132","CGI"]
[1,14870970,14871031,62,18,0.0142790498929683,0.146799750826388,-0.13252070093342,-93.7646925266224,"CHH","Os01g0364400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 35","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,14871026,14871132,107,36,0.496860023635351,0.891489400128327,-0.394629376492976,-226.977074570051,"CG","1:14865423:14871132","CGI"]
[1,14871026,14871132,107,36,0.496860023635351,0.891489400128327,-0.394629376492976,-226.977074570051,"CG","Os01g0364400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 35","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,14883720,14883838,119,51,0.210068715152882,0.0715753262101556,0.138493388942726,278.383887960662,"CHH","1:14882117:14884292","CGI"]
[1,14884860,14884910,51,17,0.0653057949928007,0.0145695494328106,0.0507362455599901,87.7584639998799,"CHH","1:14884292:14886293","CGI_shore"]
[1,14884860,14884910,51,17,0.0653057949928007,0.0145695494328106,0.0507362455599901,87.7584639998799,"CHH","1:14884755:14886755","CGI_shore"]
[1,14891320,14891395,76,25,0.110800351876102,0.041621637688561,0.0691787141875411,115.024825183938,"CHH","Os01g0364800","promoter","WALL-ASSOCIATED KINASE GENE 7/8","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && -"]
[1,14891320,14891395,76,25,0.110800351876102,0.041621637688561,0.0691787141875411,115.024825183938,"CHH","1:14891001:14891387","CGI"]
[1,14891320,14891395,76,25,0.110800351876102,0.041621637688561,0.0691787141875411,115.024825183938,"CHH","1:14891387:14893388","CGI_shore"]
[1,14921702,14921886,185,42,0.188796893399154,0.0255154370136618,0.163281456385492,290.997661091794,"CHH","1:14921066:14923066","CGI_shore"]
[1,14921702,14921886,185,42,0.188796893399154,0.0255154370136618,0.163281456385492,290.997661091794,"CHH","1:14921660:14923661","CGI_shore"]
[1,14923989,14924079,91,25,0.079174455922024,0.0179302324577884,0.0612442234642356,116.43390563365,"CHH","Os01g0365300","promoter","Os01g0365300","Hypothetical conserved gene && - && PF03080:Neprosin"]
[1,14923989,14924079,91,25,0.079174455922024,0.0179302324577884,0.0612442234642356,116.43390563365,"CHH","1:14923427:14925428","CGI_shore"]
[1,14999791,14999909,119,41,0.265075762609908,0.134257227537235,0.130818535072673,238.400816376814,"CHH","Os01g0367100","promoter","photoassimilate defective1, photoassimilate defective 1","Chloroplast-localized UDP-glucose epimerase (UGE), Galactolipid biosynthesis for chloroplast membranes, Photosynthetic capability and carbon assimilate homeostasi && - && -"]
[1,14999791,14999909,119,41,0.265075762609908,0.134257227537235,0.130818535072673,238.400816376814,"CHH","1:14998082:15000083","CGI_shore"]
[1,15016170,15016235,66,4,0.227476463127409,0.642008524658765,-0.414532061531355,-23.2317788055218,"CHG","1:15014964:15016965","CGI_shore"]
[1,15024149,15024266,118,23,0.547872117395445,0.210022195306095,0.33784992208935,128.334133116846,"CHH","1:15023689:15025689","CGI_shore"]
[1,15024149,15024266,118,23,0.547872117395445,0.210022195306095,0.33784992208935,128.334133116846,"CHH","Os01g0367400","promoter","Os01g0367400","Conserved hypothetical protein && - && -"]
[1,15024149,15024266,118,23,0.547872117395445,0.210022195306095,0.33784992208935,128.334133116846,"CHH","1:15023964:15025965","CGI_shore"]
[1,15026174,15026328,155,62,0.256682888033905,0.074388921243112,0.182293966790793,318.662624576383,"CHH","1:15025690:15027551","CGI"]
[1,15026174,15026328,155,62,0.256682888033905,0.074388921243112,0.182293966790793,318.662624576383,"CHH","Os01g0367500","promoter","Os01g0367500","Hypothetical conserved gene && - && -"]
[1,15074721,15074914,194,70,0.143101429216724,0.0377002410973302,0.105401188119394,334.245959884964,"CHH","1:15074653:15076654","CGI_shore"]
[1,15074721,15074914,194,70,0.143101429216724,0.0377002410973302,0.105401188119394,334.245959884964,"CHH","1:15074803:15075020","CGI"]
[1,15074721,15074914,194,70,0.143101429216724,0.0377002410973302,0.105401188119394,334.245959884964,"CHH","1:15072802:15074802","CGI_shore"]
[1,15113556,15113624,69,20,0.69266417528083,0.868159543658829,-0.175495368378,-93.5874298895234,"CG","1:15111215:15113685","CGI"]
[1,15113556,15113624,69,20,0.69266417528083,0.868159543658829,-0.175495368378,-93.5874298895234,"CG","1:15112351:15114351","CGI_shore"]
[1,15113556,15113624,69,20,0.69266417528083,0.868159543658829,-0.175495368378,-93.5874298895234,"CG","Os01g0368600","exon","Os01g0368600","Conserved hypothetical protein && - && -"]
[1,15128882,15128935,54,21,0.180099181786586,0.0701371788535847,0.109962002933001,116.123310908625,"CHH","1:15127284:15129284","CGI_shore"]
[1,15130252,15130326,75,17,0.302238308522448,0.150715071625947,0.151523236896501,78.1091950637644,"CHH","1:15129751:15131752","CGI_shore"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","1:15138936:15140936","CGI_shore"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","Os01g0369000","promoter","Cullin-1, Cullin 1","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress respons && sp|Q5ZC88|CUL1_ORYSJ Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","1:15139612:15141613","CGI_shore"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","1:15139807:15141807","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15138936:15140936","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","Os01g0369000","promoter","Cullin-1, Cullin 1","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress respons && sp|Q5ZC88|CUL1_ORYSJ Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15139612:15141613","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15139807:15141807","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15140937:15141184","CGI"]
[1,15142165,15142546,382,138,0.2077735638832,0.103902220944975,0.103871342938226,692.42121639872,"CHH","1:15141184:15143185","CGI_shore"]
[1,15142165,15142546,382,138,0.2077735638832,0.103902220944975,0.103871342938226,692.42121639872,"CHH","1:15141808:15142188","CGI"]
[1,15142165,15142546,382,138,0.2077735638832,0.103902220944975,0.103871342938226,692.42121639872,"CHH","1:15142188:15144189","CGI_shore"]
[1,15146864,15146942,79,16,0.181505339535727,0.312398348855894,-0.130893009320167,-83.7196745030152,"CHH","Os01g0369200","intron","Os01g0369200","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress response, Cold stress respons && sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15146864,15146942,79,16,0.181505339535727,0.312398348855894,-0.130893009320167,-83.7196745030152,"CHH","1:15146763:15148764","CGI_shore"]
[1,15149062,15149251,190,67,0.237005149793868,0.120586573326807,0.116418576467061,383.398403650446,"CHH","Os01g0369200","intron","Os01g0369200","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress response, Cold stress respons && sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15158585,15158729,145,28,0.868565134164569,0.604276289425382,0.264288844739186,132.189171397981,"CG","Os01g0369300","promoter","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3","Potassium uptake protein, kup domain containing protein && sp|Q5ZC87|HAK3_ORYSJ Probable potassium transporter 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK3 PE=2 SV=1 && PF02705:K+ potassium transporter"]
[1,15158585,15158729,145,28,0.868565134164569,0.604276289425382,0.264288844739186,132.189171397981,"CG","Os01g0369500","promoter","Os01g0369500","C2 calcium-dependent membrane targeting domain containing protein && sp|O04023|SRC2_ARATH Protein SRC2 homolog OS=Arabidopsis thaliana OX=3702 GN=SRC2 PE=1 SV=1 && PF00168:C2 domain"]
[1,15158585,15158729,145,28,0.868565134164569,0.604276289425382,0.264288844739186,132.189171397981,"CG","1:15152519:15162358","CGI"]
[1,15168830,15168882,53,21,0.090701835709178,0.0349503273580347,0.0557515083511433,97.8461378575382,"CHH","1:15167224:15169224","CGI_shore"]
[1,15168830,15168882,53,21,0.090701835709178,0.0349503273580347,0.0557515083511433,97.8461378575382,"CHH","1:15168124:15170124","CGI_shore"]
[1,15168830,15168882,53,21,0.090701835709178,0.0349503273580347,0.0557515083511433,97.8461378575382,"CHH","Os01g0369800","promoter","Os01g0369800","Hypothetical protein && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain"]
[1,15188926,15189052,127,11,0.363390932161014,0.665520546315439,-0.302129614154425,-57.4016903912305,"CG","Os01g0369900","promoter","12-OXOPHYTODIENOATE REDUCTASE 10","Similar to 12-oxo-phytodienoic acid reductase6 && sp|Q0JMR0|OPR10_ORYSJ Putative 12-oxophytodienoate reductase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=OPR10 PE=2 SV=1 && -"]
[1,15188926,15189052,127,11,0.363390932161014,0.665520546315439,-0.302129614154425,-57.4016903912305,"CG","1:15188385:15190386","CGI_shore"]
[1,15266924,15267062,139,38,0.213424096254701,0.0363220204843958,0.177102075770305,230.705583077154,"CHH","1:15265241:15267242","CGI_shore"]
[1,15277748,15277828,81,23,0.143086163726459,0.0111289365273797,0.131957227199079,130.020548549416,"CHH","1:15276591:15278591","CGI_shore"]
[1,15277748,15277828,81,23,0.143086163726459,0.0111289365273797,0.131957227199079,130.020548549416,"CHH","1:15276651:15278652","CGI_shore"]
[1,15277972,15278144,173,46,0.138593301185067,0.0173128938764193,0.121280407308648,241.975147420081,"CHH","1:15276591:15278591","CGI_shore"]
[1,15277972,15278144,173,46,0.138593301185067,0.0173128938764193,0.121280407308648,241.975147420081,"CHH","1:15276651:15278652","CGI_shore"]
[1,15284308,15284361,54,7,0.2780684292813,0.632264981377602,-0.354196552096302,-40.5580422495396,"CHG","1:15282788:15284621","CGI"]
[1,15284308,15284361,54,7,0.2780684292813,0.632264981377602,-0.354196552096302,-40.5580422495396,"CHG","Os01g0371200","promoter","PHI GLUTATHIONE S-TRANSFERASE 1","Similar to Glutathione-S-transferase 19E50 && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain|PF02798:Glutathione S-transferase, N-terminal domain"]
[1,15284308,15284361,54,7,0.2780684292813,0.632264981377602,-0.354196552096302,-40.5580422495396,"CHG","1:15284012:15286012","CGI_shore"]
[1,15288672,15288798,127,20,0.307585650263028,0.0931582650258086,0.214427385237219,118.188087466537,"CHH","Os01g0371400","promoter","PHI GLUTATHIONE S-TRANSFERASE 9","Similar to Glutathione s-transferase gstf2 && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain|PF02798:Glutathione S-transferase, N-terminal domain"]
[1,15330256,15330331,76,24,0.0506261718169418,0.00858808120748861,0.0420380906094532,110.989526530577,"CHH","Os01g0372100","intron","Os01g0372100","Hypothetical gene && - && -"]
[1,15330256,15330331,76,24,0.0506261718169418,0.00858808120748861,0.0420380906094532,110.989526530577,"CHH","1:15330024:15332024","CGI_shore"]
[1,15332389,15332481,93,11,0.587425620222453,0.799378542181999,-0.211952921959545,-50.065351175492,"CG","1:15332025:15332989","CGI"]
[1,15332389,15332481,93,11,0.587425620222453,0.799378542181999,-0.211952921959545,-50.065351175492,"CG","Os01g0372100","intron","Os01g0372100","Hypothetical gene && - && -"]
[1,15332389,15332481,93,11,0.587425620222453,0.799378542181999,-0.211952921959545,-50.065351175492,"CG","Os01g0372100","exon","Os01g0372100","Hypothetical gene && - && -"]
[1,15386345,15386452,108,40,0.196746250576071,0.0544261980432088,0.142320052532862,224.137444052568,"CHH","1:15385174:15386399","CGI"]
[1,15386345,15386452,108,40,0.196746250576071,0.0544261980432088,0.142320052532862,224.137444052568,"CHH","Os01g0373200","promoter","Os01g0373200","Hypothetical conserved gene && - && -"]
[1,15386345,15386452,108,40,0.196746250576071,0.0544261980432088,0.142320052532862,224.137444052568,"CHH","1:15386399:15388400","CGI_shore"]
[1,15398412,15398497,86,30,0.131837906963055,0.0695064856786364,0.062331421284419,121.063500061841,"CHH","1:15397391:15399392","CGI_shore"]
[1,15469518,15469652,135,34,0.390632727253591,0.170557468387118,0.220075258866474,202.122334714373,"CHH","1:15467623:15469624","CGI_shore"]
[1,15513300,15513459,160,50,0.283194138160532,0.139667375149227,0.143526763011305,249.256530174054,"CHH","1:15511342:15513342","CGI_shore"]
[1,15513300,15513459,160,50,0.283194138160532,0.139667375149227,0.143526763011305,249.256530174054,"CHH","1:15513343:15540713","CGI"]
[1,15513607,15513728,122,44,0.116069818628592,0.378127311090113,-0.262057492461522,-242.878930402819,"CHH","1:15513343:15540713","CGI"]
[1,15514084,15514267,184,75,0.271647471060193,0.149510857180041,0.122136613880151,350.489234139202,"CHH","1:15513343:15540713","CGI"]
[1,15533151,15533204,54,12,0.312438519036191,0.0842106941329453,0.228227824903245,76.6732411470333,"CHH","1:15513343:15540713","CGI"]
[1,15536505,15536568,64,12,0.897584728986161,0.534385267412764,0.363199461573397,55.1873935455353,"CG","1:15513343:15540713","CGI"]
[1,15537219,15537273,55,24,0.111614508294438,0.0452293356711086,0.0663851726233295,115.27724142547,"CHH","1:15513343:15540713","CGI"]
[1,15559198,15559385,188,33,0.131098976345139,0.0213199966121487,0.10977897973299,207.581733844508,"CHH","1:15558687:15560688","CGI_shore"]
[1,15561311,15561371,61,15,0.125173865533164,0.0178419762972154,0.107331889235949,81.456068122786,"CHH","1:15560514:15562514","CGI_shore"]
[1,15561311,15561371,61,15,0.125173865533164,0.0178419762972154,0.107331889235949,81.456068122786,"CHH","Os01g0376600","promoter","Os01g0376600","Hypothetical conserved gene && - && -"]
[1,15688655,15688725,71,20,0.146379172241879,0.0622665172991631,0.0841126549427154,84.4470939637517,"CHH","1:15684778:15703198","CGI"]
[1,15881202,15881259,58,10,0.142408430109704,0.394955256426504,-0.2525468263168,-56.9110958174493,"CG","1:15880157:15882158","CGI_shore"]
[1,15881202,15881259,58,10,0.142408430109704,0.394955256426504,-0.2525468263168,-56.9110958174493,"CG","1:15880691:15881417","CGI"]
[1,15881233,15881364,132,19,0.19538004166774,0.46634221360074,-0.270962171933,-91.6130521637189,"CHG","1:15880157:15882158","CGI_shore"]
[1,15881233,15881364,132,19,0.19538004166774,0.46634221360074,-0.270962171933,-91.6130521637189,"CHG","1:15880691:15881417","CGI"]
[1,15956955,15957023,69,4,0.19837374318541,0.566654775863263,-0.368281032677853,-17.5042360181797,"CHG","1:15955853:15957854","CGI_shore"]
[1,15956955,15957023,69,4,0.19837374318541,0.566654775863263,-0.368281032677853,-17.5042360181797,"CHG","1:15956876:15958876","CGI_shore"]
[1,15971507,15971618,112,16,0.0209313537873402,0.205287263335801,-0.184355909548461,-104.953464438502,"CHH","1:15971612:15973612","CGI_shore"]
[1,15991707,15991792,86,18,0.234868392781819,0.112208433401056,0.122659959380762,82.6936731663893,"CHH","1:15990109:15992109","CGI_shore"]
[1,15991707,15991792,86,18,0.234868392781819,0.112208433401056,0.122659959380762,82.6936731663893,"CHH","1:15990553:15992553","CGI_shore"]
[1,15991707,15991792,86,18,0.234868392781819,0.112208433401056,0.122659959380762,82.6936731663893,"CHH","Os01g0382900","promoter","Os01g0382900","Conserved hypothetical protein && - && -"]
[1,15997441,15997510,70,28,0.00863982844775331,0.0813715088519622,-0.0727316804042089,-134.238512120995,"CHH","1:15995477:15997477","CGI_shore"]
[1,15997441,15997510,70,28,0.00863982844775331,0.0813715088519622,-0.0727316804042089,-134.238512120995,"CHH","1:15997478:15998679","CGI"]
[1,16115177,16115359,183,53,0.159246916213096,0.0510109867790017,0.108235929434095,264.219059884077,"CHH","1:16113528:16115529","CGI_shore"]
[1,16115177,16115359,183,53,0.159246916213096,0.0510109867790017,0.108235929434095,264.219059884077,"CHH","1:16114869:16116111","CGI"]
[1,16140272,16140426,155,51,0.1149406554937,0.043141650280975,0.0717990052127249,241.933021866303,"CHH","Os01g0385000","intron","Os01g0385000","Conserved hypothetical protein && - && -"]
[1,16140272,16140426,155,51,0.1149406554937,0.043141650280975,0.0717990052127249,241.933021866303,"CHH","Os01g0384901","exon","Os01g0384901","Hypothetical gene && - && -"]
[1,16140272,16140426,155,51,0.1149406554937,0.043141650280975,0.0717990052127249,241.933021866303,"CHH","Os01g0384901","utr3","Os01g0384901","Hypothetical gene && - && -"]
[1,16209895,16210013,119,24,0.145930857772652,0.0245644133082925,0.12136644446436,165.004541787641,"CHH","1:16206476:16224007","CGI"]
[1,16264317,16264389,73,16,0.0687689327708298,0.0141057032687339,0.0546632295020958,93.0786402545591,"CHH","1:16264265:16266265","CGI_shore"]
[1,16301847,16302047,201,57,0.192793136757583,0.0489569957530543,0.143836141004529,328.939147291764,"CHH","1:16300059:16302059","CGI_shore"]
[1,16301847,16302047,201,57,0.192793136757583,0.0489569957530543,0.143836141004529,328.939147291764,"CHH","1:16300335:16302336","CGI_shore"]
[1,16342223,16342360,138,46,0.0462267020752259,0.185674634970705,-0.139447932895479,-250.621570395424,"CHH","1:16340402:16342402","CGI_shore"]
[1,16342223,16342360,138,46,0.0462267020752259,0.185674634970705,-0.139447932895479,-250.621570395424,"CHH","1:16340834:16342835","CGI_shore"]
[1,16342577,16342676,100,27,0.461903008834312,0.762106946560607,-0.300203937726295,-125.972969890986,"CG","1:16340834:16342835","CGI_shore"]
[1,16342577,16342676,100,27,0.461903008834312,0.762106946560607,-0.300203937726295,-125.972969890986,"CG","1:16342403:16343012","CGI"]
[1,16357237,16357442,206,65,0.148760844136914,0.0705565280817372,0.0782043160551765,285.630119462664,"CHH","1:16357116:16359117","CGI_shore"]
[1,16363396,16363561,166,46,0.289959159624192,0.121684063335671,0.168275096288521,244.238320644595,"CHH","1:16361604:16365191","CGI"]
[1,16383853,16383993,141,44,0.185434657783948,0.101241670383497,0.0841929874004516,212.655885007188,"CHH","Os01g0388500","promoter","Os01g0388500","Similar to Fibronectin, type III-like fold && sp|F4IN58|PIEZO_ARATH Piezo-type mechanosensitive ion channel homolog OS=Arabidopsis thaliana OX=3702 GN=At2g48060/At2g48040/At2g48050 PE=2 SV=1 && PF12166:Piezo non-specific cation channel, R-Ras-binding domain"]
[1,16393998,16394062,65,22,0.272386713911248,0.135953493277095,0.136433220634153,108.341735534865,"CHH","Os01g0388700","promoter","Os01g0388700","Protein of unknown function DUF679 family protein && sp|Q3E912|DMP10_ARATH Protein DMP10 OS=Arabidopsis thaliana OX=3702 GN=DMP10 PE=2 SV=1 && PF05078:Protein of unknown function (DUF679)"]
[1,16393998,16394062,65,22,0.272386713911248,0.135953493277095,0.136433220634153,108.341735534865,"CHH","1:16393807:16395808","CGI_shore"]
[1,16417277,16417353,77,26,0.113459334493008,0.0455155197901091,0.067943814702899,129.767448623497,"CHH","1:16417050:16417477","CGI"]
[1,16417277,16417353,77,26,0.113459334493008,0.0455155197901091,0.067943814702899,129.767448623497,"CHH","1:16415827:16417828","CGI_shore"]
[1,16417277,16417353,77,26,0.113459334493008,0.0455155197901091,0.067943814702899,129.767448623497,"CHH","1:16416223:16418223","CGI_shore"]
[1,16433899,16433986,88,20,0.230112897750733,0.11602123244563,0.114091665305103,91.853314411937,"CHH","1:16433494:16435495","CGI_shore"]
[1,16433899,16433986,88,20,0.230112897750733,0.11602123244563,0.114091665305103,91.853314411937,"CHH","Os01g0389700","promoter","Os01g0389700","Protein of unknown function DUF679 family protein && sp|Q9STW3|DMP3_ARATH Protein DMP3 OS=Arabidopsis thaliana OX=3702 GN=DMP3 PE=2 SV=1 && PF05078:Protein of unknown function (DUF679)"]
[1,16433899,16433986,88,20,0.230112897750733,0.11602123244563,0.114091665305103,91.853314411937,"CHH","1:16433896:16435896","CGI_shore"]
[1,16442101,16442184,84,33,0.0784858226281113,0.0221448943976337,0.0563409282304776,149.40114028945,"CHH","1:16441233:16443233","CGI_shore"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390400","promoter","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390300","promoter","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","1:16478989:16481147","CGI"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390300","exon","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390300","utr5","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390400","promoter","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","promoter","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","1:16478989:16481147","CGI"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","exon","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","utr5","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","TSS","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16485527,16485638,112,22,0.104524557764715,0.0281737398661056,0.0763508178986091,133.048657061917,"CHH","Os01g0390400","intron","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16485730,16485852,123,13,0.320807458297316,0.108323546449698,0.212483911847618,59.2675331071681,"CHG","Os01g0390400","intron","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16485730,16485852,123,13,0.320807458297316,0.108323546449698,0.212483911847618,59.2675331071681,"CHG","1:16485781:16487781","CGI_shore"]
[1,16487849,16487925,77,24,0.290320454117213,0.146098638039347,0.144221816077866,117.086688871716,"CHH","Os01g0390400","intron","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16487849,16487925,77,24,0.290320454117213,0.146098638039347,0.144221816077866,117.086688871716,"CHH","1:16487782:16488506","CGI"]
[1,16520268,16520323,56,13,0.193888166516746,0.028565014871804,0.165323151644942,75.4859354684947,"CHH","Os01g0390900","promoter","Protein phosphatase 6","Similar to Dual-specificity protein phosphatase-like protein && sp|Q9ZR37|DUS1_ARATH Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana OX=3702 GN=DSPTP1 PE=1 SV=1 && -"]
[1,16520268,16520323,56,13,0.193888166516746,0.028565014871804,0.165323151644942,75.4859354684947,"CHH","1:16518671:16520672","CGI_shore"]
[1,16520268,16520323,56,13,0.193888166516746,0.028565014871804,0.165323151644942,75.4859354684947,"CHH","1:16519768:16521768","CGI_shore"]
[1,16573497,16573747,251,80,0.349321603247312,0.16717239439045,0.182149208856862,523.259748329487,"CHH","1:16572116:16589683","CGI"]
[1,16588950,16589037,88,35,0.139186582390561,0.0170286172718268,0.122157965118735,171.986502513531,"CHH","Os01g0391500","utr5","Os01g0391500","Hypothetical conserved gene && sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g31810 PE=1 SV=1 && -"]
[1,16588950,16589037,88,35,0.139186582390561,0.0170286172718268,0.122157965118735,171.986502513531,"CHH","Os01g0391500","exon","Os01g0391500","Hypothetical conserved gene && sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g31810 PE=1 SV=1 && -"]
[1,16588950,16589037,88,35,0.139186582390561,0.0170286172718268,0.122157965118735,171.986502513531,"CHH","1:16572116:16589683","CGI"]
[1,16605674,16605736,63,15,0.686456629981668,0.531149333926189,0.155307296055479,57.1149719558187,"CHG","1:16604007:16606007","CGI_shore"]
[1,16684037,16684091,55,13,0.305902856474056,0.173128468846467,0.13277438762759,57.8355364803624,"CG","1:16682649:16684650","CGI_shore"]
[1,16684037,16684091,55,13,0.305902856474056,0.173128468846467,0.13277438762759,57.8355364803624,"CG","1:16684007:16684982","CGI"]
[1,16684860,16684942,83,9,0.121247446389013,0.244305973044476,-0.123058526655463,-42.5750377773648,"CG","1:16684007:16684982","CGI"]
[1,16688368,16688442,75,13,0.107635520902879,0.0389256898106618,0.0687098310922173,73.1499214528294,"CHH","1:16686478:16688478","CGI_shore"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","Os01g0392600","utr5","Os01g0392600","Conserved hypothetical protein && - && -"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","Os01g0392600","exon","Os01g0392600","Conserved hypothetical protein && - && -"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","1:16697589:16699030","CGI"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","Os01g0392600","intron","Os01g0392600","Conserved hypothetical protein && - && -"]
[1,16963350,16963414,65,25,0.0588792400090455,0.0228562572419311,0.0360229827671143,104.062213253622,"CHH","1:16961794:16963794","CGI_shore"]
[1,16966909,16967011,103,25,0.0551036159110404,0.0211462747020587,0.0339573412089817,106.399997693689,"CHH","1:16965677:16967677","CGI_shore"]
[1,16966909,16967011,103,25,0.0551036159110404,0.0211462747020587,0.0339573412089817,106.399997693689,"CHH","1:16966094:16968095","CGI_shore"]
[1,16966909,16967011,103,25,0.0551036159110404,0.0211462747020587,0.0339573412089817,106.399997693689,"CHH","1:16966862:16968863","CGI_shore"]
[1,16972072,16972209,138,38,0.0710646325933231,0.0299196191945598,0.0411450133987633,146.432550982558,"CHH","1:16970213:16972213","CGI_shore"]
[1,16972072,16972209,138,38,0.0710646325933231,0.0299196191945598,0.0411450133987633,146.432550982558,"CHH","1:16970361:16972362","CGI_shore"]
[1,16972072,16972209,138,38,0.0710646325933231,0.0299196191945598,0.0411450133987633,146.432550982558,"CHH","1:16971959:16973960","CGI_shore"]
[1,16986951,16987052,102,6,0.595288171835497,0.111404212922024,0.483883958913473,30.4873511600954,"CHG","1:16986157:16988157","CGI_shore"]
[1,16992406,16992527,122,47,0.139923903527439,0.0511217869758041,0.0888021165516345,217.95570115729,"CHH","1:16992269:16992648","CGI"]
[1,16992406,16992527,122,47,0.139923903527439,0.0511217869758041,0.0888021165516345,217.95570115729,"CHH","1:16992427:16994427","CGI_shore"]
[1,17009566,17009626,61,32,0.103174859847232,0.0502129700630501,0.0529618897841818,148.897191852006,"CHH","1:17008761:17010761","CGI_shore"]
[1,17044401,17044582,182,66,0.196351848686195,0.0289319027986902,0.167419945887505,394.425088560697,"CHH","1:17042228:17044447","CGI"]
[1,17044401,17044582,182,66,0.196351848686195,0.0289319027986902,0.167419945887505,394.425088560697,"CHH","1:17044447:17046448","CGI_shore"]
[1,17147976,17148031,56,7,0.38566552854916,0.657919475078672,-0.272253946529513,-29.3478877219174,"CHG","1:17146891:17148891","CGI_shore"]
[1,17158858,17159015,158,49,0.225950570586806,0.0916271253882918,0.134323445198514,232.262398914738,"CHH","1:17157021:17159021","CGI_shore"]
[1,17158858,17159015,158,49,0.225950570586806,0.0916271253882918,0.134323445198514,232.262398914738,"CHH","1:17157919:17159919","CGI_shore"]
[1,17174176,17174309,134,29,0.662587333832853,0.344740123300436,0.317847210532417,133.173735456055,"CHG","1:17173917:17176064","CGI"]
[1,17177428,17177664,237,78,0.264074714385649,0.0950353503724324,0.169039364013217,483.322554559474,"CG","1:17176064:17178065","CGI_shore"]
[1,17177428,17177664,237,78,0.264074714385649,0.0950353503724324,0.169039364013217,483.322554559474,"CG","1:17177419:17177881","CGI"]
[1,17229484,17229593,110,14,0.337127091429082,0.0092151602964072,0.327911931132674,95.4889614512886,"CHH","1:17228777:17230777","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17237869:17239870","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238281:17240282","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238296:17240296","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238693:17240694","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238907:17239255","CGI"]
[1,17290465,17290584,120,58,0.09688751497559,0.0387398302912028,0.0581476846843872,279.768553205889,"CHH","1:17290145:17292146","CGI_shore"]
[1,17290465,17290584,120,58,0.09688751497559,0.0387398302912028,0.0581476846843872,279.768553205889,"CHH","1:17290377:17292377","CGI_shore"]
[1,17316816,17316878,63,15,0.0958742020182144,0.029434856685038,0.0664393453331765,87.3555833544641,"CHH","Os01g0501000","intron","Mediator complex protein OsMED9, Mediator 9_1","Conserved hypothetical protein && sp|Q8RWA2|MED9_ARATH Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1 && -"]
[1,17316816,17316878,63,15,0.0958742020182144,0.029434856685038,0.0664393453331765,87.3555833544641,"CHH","1:17311367:17318369","CGI"]
[1,17316816,17316878,63,15,0.0958742020182144,0.029434856685038,0.0664393453331765,87.3555833544641,"CHH","1:17316585:17318585","CGI_shore"]
[1,17419946,17420050,105,23,0.319469530700822,0.122454260032992,0.19701527066783,129.744375715541,"CHH","Os01g0502700","promoter","Os01g0502700","Similar to Histone H2A && sp|A2WQG7|H2A5_ORYSI Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1 && PF16211:C-terminus of histone H2A"]
[1,17419946,17420050,105,23,0.319469530700822,0.122454260032992,0.19701527066783,129.744375715541,"CHH","1:17418331:17420331","CGI_shore"]
[1,17419946,17420050,105,23,0.319469530700822,0.122454260032992,0.19701527066783,129.744375715541,"CHH","1:17419718:17421719","CGI_shore"]
[1,17466403,17466518,116,36,0.227457373787567,0.128698165789188,0.0987592079983794,160.535490682388,"CHH","1:17465582:17467583","CGI_shore"]
[1,17466403,17466518,116,36,0.227457373787567,0.128698165789188,0.0987592079983794,160.535490682388,"CHH","1:17466267:17468268","CGI_shore"]
[1,17466403,17466518,116,36,0.227457373787567,0.128698165789188,0.0987592079983794,160.535490682388,"CHH","Os01g0503400","promoter","NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6","Similar to (Rice Genome Annotation Project) metal transporter Nramp6 && sp|Q5QN13|NRAM4_ORYSJ Metal transporter Nramp4 OS=Oryza sativa subsp. japonica OX=39947 GN=NRAMP4 PE=2 SV=1 && -"]
[1,17478394,17478548,155,40,0.160319899174886,0.0701873544494693,0.0901325447254171,198.159334469584,"CHH","1:17477154:17479154","CGI_shore"]
[1,17480414,17480577,164,19,0.183950698969038,0.0632149284941984,0.120735770474839,83.4922339536053,"CHH","1:17479337:17481337","CGI_shore"]
[1,17480414,17480577,164,19,0.183950698969038,0.0632149284941984,0.120735770474839,83.4922339536053,"CHH","1:17479629:17481630","CGI_shore"]
[1,17480894,17480948,55,16,0.12867113257614,0.0589043636183421,0.0697667689577983,69.3251207470975,"CHH","1:17479337:17481337","CGI_shore"]
[1,17480894,17480948,55,16,0.12867113257614,0.0589043636183421,0.0697667689577983,69.3251207470975,"CHH","1:17479629:17481630","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17492616:17494616","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17493410:17495411","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17494300:17496301","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17494617:17494841","CGI"]
[1,17516190,17516367,178,62,0.0970818744202837,0.0502490733797589,0.0468328010405248,248.976755102209,"CHH","1:17515556:17517556","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17517016:17519016","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17517932:17519933","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17518121:17520121","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17519017:17519433","CGI"]
[1,17520791,17520905,115,39,0.0844116160336673,0.0046387996633515,0.0797728163703158,209.07762631367,"CHH","1:17519433:17521434","CGI_shore"]
[1,17520791,17520905,115,39,0.0844116160336673,0.0046387996633515,0.0797728163703158,209.07762631367,"CHH","1:17520122:17521497","CGI"]
[1,17520803,17520951,149,49,0.166168262448917,0.0650511619333484,0.101117100515568,275.618663278126,"CG","1:17519433:17521434","CGI_shore"]
[1,17520803,17520951,149,49,0.166168262448917,0.0650511619333484,0.101117100515568,275.618663278126,"CG","1:17520122:17521497","CGI"]
[1,17521369,17521464,96,41,0.0666099840684944,0.0225816438512496,0.0440283402172448,209.771185736311,"CHH","1:17519433:17521434","CGI_shore"]
[1,17521369,17521464,96,41,0.0666099840684944,0.0225816438512496,0.0440283402172448,209.771185736311,"CHH","1:17520122:17521497","CGI"]
[1,17549227,17549316,90,9,0.870043994197209,0.52023483470197,0.349809159495239,42.0144532940918,"CG","1:17548815:17550816","CGI_shore"]
[1,17549227,17549316,90,9,0.870043994197209,0.52023483470197,0.349809159495239,42.0144532940918,"CG","1:17549213:17549502","CGI"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","Os01g0505400","promoter","Os01g0505400","Similar to 2-hydroxyphytanoyl-CoA lyase && sp|Q0JMH0|HACL_ORYSJ 2-hydroxyacyl-CoA lyase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0505400 PE=3 SV=3 && PF02775:Thiamine pyrophosphate enzyme, C-terminal TPP binding domain|PF00205:Thiamine pyrophosphate enzyme, central domain|PF02776:Thiamine pyrophosphate enzyme, N-terminal TPP binding domain"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","1:17559147:17561776","CGI"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","Os01g0504950","utr3","Os01g0504950","Hypothetical gene && sp|Q0JMH0|HACL_ORYSJ 2-hydroxyacyl-CoA lyase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0505400 PE=3 SV=3 && PF02775:Thiamine pyrophosphate enzyme, C-terminal TPP binding domain|PF00205:Thiamine pyrophosphate enzyme, central domain|PF02776:Thiamine pyrophosphate enzyme, N-terminal TPP binding domain"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","Os01g0504950","exon","Os01g0504950","Hypothetical gene && sp|Q0JMH0|HACL_ORYSJ 2-hydroxyacyl-CoA lyase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0505400 PE=3 SV=3 && PF02775:Thiamine pyrophosphate enzyme, C-terminal TPP binding domain|PF00205:Thiamine pyrophosphate enzyme, central domain|PF02776:Thiamine pyrophosphate enzyme, N-terminal TPP binding domain"]
[1,17588401,17588470,70,17,0.207016043819784,0.0796010251055616,0.127415018714223,86.3262211903352,"CHH","1:17586669:17588669","CGI_shore"]
[1,17621272,17621445,174,54,0.107696437807184,0.0450240922950296,0.0626723455121539,253.140146881952,"CHH","Os01g0506200","intron","Os01g0506200","Tetratricopeptide-like helical domain containing protein && sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5 OS=Homo sapiens OX=9606 GN=TTC5 PE=1 SV=2 && PF16669:Tetratricopeptide repeat protein 5 OB fold domain"]
[1,17644802,17644901,100,27,0.185482702377903,0.0377020467348693,0.147780655643034,145.166492084947,"CHH","1:17642860:17644860","CGI_shore"]
[1,17644802,17644901,100,27,0.185482702377903,0.0377020467348693,0.147780655643034,145.166492084947,"CHH","1:17644861:17646065","CGI"]
[1,17659637,17659693,57,15,0.359767667277644,0.231180012206611,0.128587655071033,75.0515973157781,"CHH","1:17657923:17659923","CGI_shore"]
[1,17659637,17659693,57,15,0.359767667277644,0.231180012206611,0.128587655071033,75.0515973157781,"CHH","1:17658295:17660296","CGI_shore"]
[1,17679709,17679823,115,32,0.167133469527744,0.0559473200654355,0.111186149462309,170.026379494187,"CHH","1:17679353:17681354","CGI_shore"]
[1,17679709,17679823,115,32,0.167133469527744,0.0559473200654355,0.111186149462309,170.026379494187,"CHH","Os01g0507000","promoter","MICRORNA159A","Non-protein coding transcript && - && -"]
[1,17680162,17680260,99,26,0.242721204380594,0.129158827750715,0.113562376629878,116.704964846633,"CHH","1:17679353:17681354","CGI_shore"]
[1,17680162,17680260,99,26,0.242721204380594,0.129158827750715,0.113562376629878,116.704964846633,"CHH","Os01g0507000","promoter","MICRORNA159A","Non-protein coding transcript && - && -"]
[1,17680162,17680260,99,26,0.242721204380594,0.129158827750715,0.113562376629878,116.704964846633,"CHH","ENSRNA049472799","promoter","MIR159","microRNA MIR159 && - && -"]
[1,17721359,17721483,125,42,0.230994598975042,0.105860764470119,0.125133834504923,193.562829079923,"CHH","1:17720186:17722187","CGI_shore"]
[1,17755790,17755890,101,21,0.225549418181515,0.0402092004652848,0.18534021771623,102.165390276063,"CHH","Os01g0508000","promoter","BETA-GLUCOSIDASE 1","Similar to Beta-glucosidase && sp|Q5QMT0|BGL01_ORYSJ Beta-glucosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU1 PE=2 SV=1 && PF00232:Glycosyl hydrolase family 1"]
[1,17755790,17755890,101,21,0.225549418181515,0.0402092004652848,0.18534021771623,102.165390276063,"CHH","1:17755653:17756543","CGI"]
[1,17785879,17785932,54,15,0.18580792229244,0.0765023525231605,0.109305569769279,74.0369829209846,"CHH","1:17785144:17787145","CGI_shore"]
[1,17897107,17897187,81,19,0.365542670091569,0.121955644099132,0.243587025992437,85.9934783505688,"CHH","1:17895719:17897720","CGI_shore"]
[1,17897107,17897187,81,19,0.365542670091569,0.121955644099132,0.243587025992437,85.9934783505688,"CHH","Os01g0509900","intron","Os_F0780, OsFBX9","F-box domain, Skp2-like domain containing protein && - && -"]
[1,17902974,17903053,80,35,0.160937054400021,0.045752815323033,0.115184239076988,166.952546538996,"CHH","1:17900414:17903675","CGI"]
[1,17902974,17903053,80,35,0.160937054400021,0.045752815323033,0.115184239076988,166.952546538996,"CHH","1:17902679:17904679","CGI_shore"]
[1,17902974,17903053,80,35,0.160937054400021,0.045752815323033,0.115184239076988,166.952546538996,"CHH","Os01g0510100","promoter","MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6","MAP kinase kinase 1 && sp|Q5QN75|M2K1_ORYSJ Mitogen-activated protein kinase kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MKK1 PE=1 SV=1 && PF00069:Protein kinase domain"]
[1,17911382,17911508,127,31,0.263087531790101,0.144511151787817,0.118576380002284,139.866664942635,"CHH","1:17909667:17911667","CGI_shore"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","ENSRNA049472720","promoter","MIR2907","microRNA MIR2907 && - && -"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","Os01g0510600","promoter","fluorescent 1","Tetratricopeptide-like helical domain containing protein && sp|Q940U6|FLU_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FLU PE=1 SV=1 && PF13424:Tetratricopeptide repeat"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","1:17951790:17953791","CGI_shore"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","1:17952573:17954511","CGI"]
[1,18017229,18017434,206,29,0.248348277707359,0.0956652877347298,0.15268298997263,148.442872731763,"CHH","Os01g0511600","promoter","Os01g0511600","Similar to lrgB-like family protein && sp|Q9FVQ4|PLGG1_ARATH Plastidal glycolate/glycerate translocator 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PLGG1 PE=1 SV=1 && -"]
[1,18017229,18017434,206,29,0.248348277707359,0.0956652877347298,0.15268298997263,148.442872731763,"CHH","1:18016903:18018904","CGI_shore"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","1:18060996:18062996","CGI_shore"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","1:18061490:18063490","CGI_shore"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","Os01g0512400","utr3","Os01g0512400","Conserved hypothetical protein && - && -"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","Os01g0512400","exon","Os01g0512400","Conserved hypothetical protein && - && -"]
[1,18072417,18072481,65,18,0.168773774321545,0.0674972995182423,0.101276474803302,96.8947422900441,"CHH","Os01g0512700","promoter","Os01g0512700","Zinc finger, C2H2 domain containing protein && sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1 && -"]
[1,18072417,18072481,65,18,0.168773774321545,0.0674972995182423,0.101276474803302,96.8947422900441,"CHH","1:18071621:18073622","CGI_shore"]
[1,18072417,18072481,65,18,0.168773774321545,0.0674972995182423,0.101276474803302,96.8947422900441,"CHH","1:18071434:18073434","CGI_shore"]
[1,18080425,18080572,148,32,0.0529554827970711,0.246998882552686,-0.194043399755615,-165.295465549757,"CHH","1:18079961:18083890","CGI"]
[1,18133081,18133252,172,57,0.242050600874798,0.127120172583824,0.114930428290975,262.065341454789,"CHH","Os01g0513500","promoter","Os01g0513500","Hypothetical gene && - && -"]
[1,18133406,18133510,105,18,0.221907972651137,0.00674108677598,0.215166885875157,94.1109196031431,"CHH","Os01g0513500","promoter","Os01g0513500","Hypothetical gene && - && -"]
[1,18210155,18210375,221,45,0.773026180877758,0.431166627920333,0.341859552957424,216.455476028574,"CG","1:18209786:18210421","CGI"]
[1,18210381,18210582,202,89,0.232195444923373,0.087933416184417,0.144262028738956,427.47469483662,"CHH","1:18209786:18210421","CGI"]
[1,18210381,18210582,202,89,0.232195444923373,0.087933416184417,0.144262028738956,427.47469483662,"CHH","1:18210421:18212422","CGI_shore"]
[1,18211417,18211509,93,11,0.164758501678457,0.618470724433113,-0.453712222754656,-55.601926026707,"CHG","1:18210421:18212422","CGI_shore"]
[1,18248043,18248180,138,21,0.305040277366636,0.638961356330123,-0.333921078963487,-93.0092607193478,"CHG","1:18246732:18248733","CGI_shore"]
[1,18248043,18248180,138,21,0.305040277366636,0.638961356330123,-0.333921078963487,-93.0092607193478,"CHG","1:18247178:18249178","CGI_shore"]
[1,18323745,18323943,199,52,0.168748883875061,0.0461509142098107,0.122597969665251,304.813871984311,"CHH","1:18323512:18323863","CGI"]
[1,18323745,18323943,199,52,0.168748883875061,0.0461509142098107,0.122597969665251,304.813871984311,"CHH","1:18323863:18325864","CGI_shore"]
[1,18323745,18323943,199,52,0.168748883875061,0.0461509142098107,0.122597969665251,304.813871984311,"CHH","Os01g0516900","intron","PLEIOTROPIC DRUG RESISTANCE 14","ABC transporter-like domain containing protein && sp|Q8GU89|AB37G_ORYSJ ABC transporter G family member 37 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG37 PE=2 SV=1 && -"]
[1,18324888,18324946,59,22,0.406008265952975,0.265697504604745,0.14031076134823,106.968699271139,"CHH","1:18323863:18325864","CGI_shore"]
[1,18324888,18324946,59,22,0.406008265952975,0.265697504604745,0.14031076134823,106.968699271139,"CHH","Os01g0516900","intron","PLEIOTROPIC DRUG RESISTANCE 14","ABC transporter-like domain containing protein && sp|Q8GU89|AB37G_ORYSJ ABC transporter G family member 37 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG37 PE=2 SV=1 && -"]
[1,18491182,18491303,122,38,0.435753606038281,0.78224673672522,-0.346493130686939,-221.219327753542,"CG","1:18490294:18492303","CGI"]
[1,18491555,18491717,163,32,0.504477109404277,0.77669865596567,-0.272221546561393,-157.751546783393,"CG","1:18490294:18492303","CGI"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","1:18598297:18600297","CGI_shore"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","Os01g0521500","promoter","DnaJ domain protein C8","Heat shock protein DnaJ family protein && - && PF12572:Protein of unknown function (DUF3752)|PF00226:DnaJ domain"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","1:18599064:18601064","CGI_shore"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","1:18600039:18602040","CGI_shore"]
[1,18616029,18616117,89,37,0.0484459940182965,0.0203610142135461,0.0280849798047504,147.22530516304,"CHH","Os01g0521600","exon","Os01g0521600","Similar to NB-ARC domain containing protein, expressed && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && -"]
[1,18616029,18616117,89,37,0.0484459940182965,0.0203610142135461,0.0280849798047504,147.22530516304,"CHH","Os01g0521600","utr3","Os01g0521600","Similar to NB-ARC domain containing protein, expressed && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && -"]
[1,18616029,18616117,89,37,0.0484459940182965,0.0203610142135461,0.0280849798047504,147.22530516304,"CHH","1:18615268:18617268","CGI_shore"]
[1,18655721,18655966,246,82,0.132478704970866,0.0300012945724968,0.10247741039837,532.885537627867,"CHH","1:18654429:18656429","CGI_shore"]
[1,18655721,18655966,246,82,0.132478704970866,0.0300012945724968,0.10247741039837,532.885537627867,"CHH","1:18655054:18657055","CGI_shore"]
[1,18659602,18659902,301,76,0.271517434059641,0.109956926217046,0.161560507842595,417.684677343907,"CHH","1:18659261:18661262","CGI_shore"]
[1,18659602,18659902,301,76,0.271517434059641,0.109956926217046,0.161560507842595,417.684677343907,"CHH","Os01g0522800","intron","Os01g0522800","Conserved hypothetical protein && - && -"]
[1,18698066,18698230,165,76,0.105478939712882,0.290172011912335,-0.184693072199453,-465.120673644813,"CHH","1:18698036:18700036","CGI_shore"]
[1,18698066,18698230,165,76,0.105478939712882,0.290172011912335,-0.184693072199453,-465.120673644813,"CHH","1:18698058:18700059","CGI_shore"]
[1,18710021,18710166,146,29,0.166144924925098,0.0650088037192244,0.101136121205874,178.254562387136,"CHH","1:18708489:18710490","CGI_shore"]
[1,18710021,18710166,146,29,0.166144924925098,0.0650088037192244,0.101136121205874,178.254562387136,"CHH","1:18710130:18712130","CGI_shore"]
[1,18744459,18744560,102,30,0.103842108237059,0.0429824856877931,0.060859622549266,130.844184674837,"CHH","1:18744147:18746147","CGI_shore"]
[1,18744459,18744560,102,30,0.103842108237059,0.0429824856877931,0.060859622549266,130.844184674837,"CHH","1:18742747:18744748","CGI_shore"]
[1,18880975,18881045,71,25,0.0656947617432813,0.0133242074054612,0.0523705543378201,116.230992073137,"CHH","1:18880422:18882423","CGI_shore"]
[1,18894816,18894934,119,36,0.103543546053673,0.0254770266713199,0.078066519382353,187.119624603817,"CHH","1:18893716:18895717","CGI_shore"]
[1,18907603,18907675,73,5,0.42260869443239,0.105569352890149,0.317039341542242,25.3474136556086,"CHG","1:18907355:18907804","CGI"]
[1,18907603,18907675,73,5,0.42260869443239,0.105569352890149,0.317039341542242,25.3474136556086,"CHG","1:18907025:18909026","CGI_shore"]
[1,18910199,18910283,85,17,0.885902811347686,0.843674859524508,0.0422279518231777,72.4334825642035,"CG","1:18909919:18911180","CGI"]
[1,18918195,18918292,98,23,0.551527682416863,0.786645275518353,-0.235117593101489,-96.8681742803671,"CG","1:18918153:18918606","CGI"]
[1,18920941,18921067,127,49,0.136633920450753,0.053255806205738,0.0833781142450149,233.589880181723,"CHH","1:18920761:18921171","CGI"]
[1,18934391,18934458,68,24,0.120023182330462,0.0465564378525113,0.0734667444779507,111.25002706972,"CHH","Os01g0527400","intron","Os01g0527400","Transcription elongation factor S-II, central region domain containing protein && - && PF01426:BAH domain|PF07500:Transcription factor S-II (TFIIS), central domain"]
[1,18934391,18934458,68,24,0.120023182330462,0.0465564378525113,0.0734667444779507,111.25002706972,"CHH","1:18932488:18934488","CGI_shore"]
[1,18936237,18936316,80,26,0.212091799969656,0.107635786807387,0.104456013162269,118.910989469897,"CHH","Os01g0527400","intron","Os01g0527400","Transcription elongation factor S-II, central region domain containing protein && - && PF01426:BAH domain|PF07500:Transcription factor S-II (TFIIS), central domain"]
[1,18936237,18936316,80,26,0.212091799969656,0.107635786807387,0.104456013162269,118.910989469897,"CHH","1:18934489:18937501","CGI"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","1:18974758:18976758","CGI_shore"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","Os01g0528000","promoter","Os01g0528000","Transcription factor IIIC, subunit 5 domain containing protein && sp|Q8R2T8|TF3C5_MOUSE General transcription factor 3C polypeptide 5 OS=Mus musculus OX=10090 GN=Gtf3c5 PE=2 SV=2 && PF17682:Tau95 Triple barrel domain"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","Os01g0527900","exon","Os01g0527900","Hypothetical conserved gene && - && PF14303:No apical meristem-associated C-terminal domain"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","1:18976759:18978182","CGI"]
[1,19022228,19022447,220,85,0.168425877439867,0.0694229343038255,0.0990029431360417,429.217296792155,"CHH","1:19020589:19022589","CGI_shore"]
[1,19022228,19022447,220,85,0.168425877439867,0.0694229343038255,0.0990029431360417,429.217296792155,"CHH","1:19020673:19022674","CGI_shore"]
[1,19022228,19022447,220,85,0.168425877439867,0.0694229343038255,0.0990029431360417,429.217296792155,"CHH","1:19021635:19023635","CGI_shore"]
[1,19023195,19023283,89,19,0.128173261166375,0.0431136628964192,0.0850595982699553,95.1848920248249,"CHH","1:19023030:19025031","CGI_shore"]
[1,19023195,19023283,89,19,0.128173261166375,0.0431136628964192,0.0850595982699553,95.1848920248249,"CHH","1:19021635:19023635","CGI_shore"]
[1,19064321,19064382,62,16,0.113216165266781,0.00981434114073279,0.103401824126048,91.6780266394754,"CHH","1:19062763:19064763","CGI_shore"]
[1,19065075,19065248,174,33,0.101402346431371,0.0186124160862361,0.0827899303451345,161.487252201448,"CHH","1:19064764:19065404","CGI"]
[1,19078069,19078189,121,50,0.16106062782557,0.0350959840002202,0.125964643825349,241.000844238157,"CHH","1:19076283:19078283","CGI_shore"]
[1,19078069,19078189,121,50,0.16106062782557,0.0350959840002202,0.125964643825349,241.000844238157,"CHH","Os01g0530300","promoter","Os01g0530300","SANT associated domain containing protein && - && PF09133:SANTA (SANT Associated)"]
[1,19085582,19085641,60,18,0.415600919595906,0.296003459274518,0.119597460321388,80.0943777667427,"CHH","Os01g0530366","promoter","Os01g0530366","RNA polymerase Rbp10 domain containing protein && sp|Q9FLM8|NRPBC_ARATH DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1 && -"]
[1,19085582,19085641,60,18,0.415600919595906,0.296003459274518,0.119597460321388,80.0943777667427,"CHH","1:19083879:19086316","CGI"]
[1,19094569,19094680,112,31,0.18959548457723,0.0986433658452084,0.0909521187320212,134.11345636802,"CHH","Os01g0530450","promoter","Os01g0530450","Similar to Biostress-resistance-related protein (Fragment) && - && -"]
[1,19234926,19234982,57,19,0.158923845240426,0.00771033679300851,0.151213508447417,93.7244638326764,"CHH","1:19233072:19235072","CGI_shore"]
[1,19300115,19300239,125,33,0.147825215465906,0.0121363347736327,0.135688880692273,175.303610392809,"CHH","Os01g0533400","exon","BETA-GALACTOSIDASE 5","Glycoside hydrolase, family 35 protein && sp|Q8RUV9|BGAL1_ORYSJ Beta-galactosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0533400 PE=2 SV=1 && PF02140:Galactose binding lectin domain|PF01301:Glycosyl hydrolases family 35|PF17834:Beta-sandwich domain in beta galactosidase"]
[1,19300115,19300239,125,33,0.147825215465906,0.0121363347736327,0.135688880692273,175.303610392809,"CHH","Os01g0533400","intron","BETA-GALACTOSIDASE 5","Glycoside hydrolase, family 35 protein && sp|Q8RUV9|BGAL1_ORYSJ Beta-galactosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0533400 PE=2 SV=1 && PF02140:Galactose binding lectin domain|PF01301:Glycosyl hydrolases family 35|PF17834:Beta-sandwich domain in beta galactosidase"]
[1,19300115,19300239,125,33,0.147825215465906,0.0121363347736327,0.135688880692273,175.303610392809,"CHH","1:19299808:19301808","CGI_shore"]
[1,19324710,19324974,265,85,0.128138400486013,0.0510059728786115,0.0771324276074016,372.803969208216,"CHH","Os01g0533800","intron","Os01g0533800","Conserved hypothetical protein && sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3 && -"]
[1,19324710,19324974,265,85,0.128138400486013,0.0510059728786115,0.0771324276074016,372.803969208216,"CHH","1:19322988:19324988","CGI_shore"]
[1,19324710,19324974,265,85,0.128138400486013,0.0510059728786115,0.0771324276074016,372.803969208216,"CHH","1:19323309:19325310","CGI_shore"]
[1,19325001,19325083,83,19,0.805740478091777,0.485300695781318,0.320439782310459,82.324576695768,"CG","Os01g0533800","intron","Os01g0533800","Conserved hypothetical protein && sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3 && -"]
[1,19325001,19325083,83,19,0.805740478091777,0.485300695781318,0.320439782310459,82.324576695768,"CG","1:19323309:19325310","CGI_shore"]
[1,19325001,19325083,83,19,0.805740478091777,0.485300695781318,0.320439782310459,82.324576695768,"CG","1:19324989:19327713","CGI"]
[1,19363102,19363193,92,29,0.078384573372625,0.0295595904378199,0.0488249829348051,127.247205062593,"CHH","1:19362160:19364160","CGI_shore"]
[1,19394741,19394910,170,31,0.0440730540601061,0.163228886351092,-0.119155832290986,-149.408436375388,"CG","Os01g0534900","exon","HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1","Similar to Hv711N16.16 (Fragment) && sp|Q5XEZ5|CSC1_ARATH Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana OX=3702 GN=CSC1 PE=1 SV=1 && PF02714:Calcium-dependent channel, 7TM region, putative phosphate|PF13967:Late exocytosis, associated with Golgi transport|PF14703:Cytosolic domain of 10TM putative phosphate transporter"]
[1,19395264,19395345,82,14,0.0461449021012873,0.151758859322955,-0.105613957221668,-73.2138554038129,"CHH","Os01g0534900","intron","HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1","Similar to Hv711N16.16 (Fragment) && sp|Q5XEZ5|CSC1_ARATH Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana OX=3702 GN=CSC1 PE=1 SV=1 && PF02714:Calcium-dependent channel, 7TM region, putative phosphate|PF13967:Late exocytosis, associated with Golgi transport|PF14703:Cytosolic domain of 10TM putative phosphate transporter"]
[1,19441741,19442053,313,81,0.195445027777107,0.0889810369019565,0.106463990875151,373.338240568028,"CHH","1:19427804:19442960","CGI"]
[1,19442048,19442108,61,14,0.570043160650798,0.859567439162696,-0.289524278511898,-66.1601398838325,"CG","1:19427804:19442960","CGI"]
[1,19449614,19449716,103,36,0.101215499013214,0.0187674900416027,0.0824480089716115,161.674993943199,"CHH","1:19449172:19451342","CGI"]
[1,19465702,19465778,77,18,0.397380992918433,0.148114439459983,0.24926655345845,87.0203225632363,"CHH","1:19464304:19466304","CGI_shore"]
[1,19465702,19465778,77,18,0.397380992918433,0.148114439459983,0.24926655345845,87.0203225632363,"CHH","Os01g0535900","promoter","Os01g0535900","Similar to methyltransferase && sp|Q2JRH1|TRMB_SYNJA tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=trmB PE=3 SV=1 && PF02390:Putative methyltransferase"]
[1,19506014,19506270,257,62,0.241779407433318,0.116254972732779,0.125524434700539,311.884556759147,"CHH","1:19505384:19507384","CGI_shore"]
[1,19506014,19506270,257,62,0.241779407433318,0.116254972732779,0.125524434700539,311.884556759147,"CHH","Os01g0536433","promoter","Os01g0536433","Hypothetical protein && sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica OX=39946 GN=20ox2 PE=1 SV=1 && -"]
[1,19506014,19506270,257,62,0.241779407433318,0.116254972732779,0.125524434700539,311.884556759147,"CHH","Os01g0536400","intron","Os01g0536400","Isopenicillin N synthase family protein && sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g03400 PE=2 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[1,19508481,19508588,108,31,0.0619876742261535,0.159019704774652,-0.0970320305484987,-159.961339980949,"CHH","1:19508403:19510404","CGI_shore"]
[1,19508481,19508588,108,31,0.0619876742261535,0.159019704774652,-0.0970320305484987,-159.961339980949,"CHH","Os01g0536400","promoter","Os01g0536400","Isopenicillin N synthase family protein && sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g03400 PE=2 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[1,19530548,19530708,161,49,0.13210738706835,0.0449967474285927,0.0871106396397578,219.34854053033,"CHH","1:19529024:19531024","CGI_shore"]
[1,19530548,19530708,161,49,0.13210738706835,0.0449967474285927,0.0871106396397578,219.34854053033,"CHH","1:19529515:19531516","CGI_shore"]
[1,19600924,19600986,63,14,0.391525272884408,0.200938342053256,0.190586930831152,73.8137001338824,"CHH","1:19556911:19622510","CGI"]
[1,19647485,19647683,199,80,0.0834601813504461,0.0275615959693071,0.0558985853811389,442.083057118292,"CHH","1:19647200:19649201","CGI_shore"]
[1,19707898,19707951,54,23,0.0498867962758026,0.0155282327415774,0.0343585635342252,103.13843283965,"CHH","1:19707634:19709634","CGI_shore"]
[1,19710072,19710422,351,23,0.11017197674313,0.491049178990648,-0.380877202247518,-194.951886361938,"CG","1:19709635:19710625","CGI"]
[1,19710241,19710304,64,7,0.0259892778772169,0.287814287441065,-0.261825009563848,-36.7129940383287,"CHG","1:19709635:19710625","CGI"]
[1,19735358,19735589,232,44,0.226202970189922,0.0203497381125058,0.205853232077416,225.050954962149,"CHH","1:19735239:19736141","CGI"]
[1,19736060,19736158,99,33,0.244264450315406,0.106423576941934,0.137840873373472,180.750400972044,"CHH","1:19735239:19736141","CGI"]
[1,19736060,19736158,99,33,0.244264450315406,0.106423576941934,0.137840873373472,180.750400972044,"CHH","1:19736141:19738142","CGI_shore"]
[1,19855012,19855107,96,34,0.186940744432101,0.0683291283993062,0.118611616032794,147.548322400238,"CHH","Os01g0540400","promoter","Os01g0540400","Transposase, MuDR, plant domain containing protein && - && PF03108:MuDR family transposase"]
[1,19855012,19855107,96,34,0.186940744432101,0.0683291283993062,0.118611616032794,147.548322400238,"CHH","Os01g0540300","promoter","Os01g0540300","Rac-like GTP-binding protein 2 && sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC2 PE=2 SV=1 && -"]
[1,19855012,19855107,96,34,0.186940744432101,0.0683291283993062,0.118611616032794,147.548322400238,"CHH","1:19854385:19855467","CGI"]
[1,19920395,19920514,120,37,0.269166838436706,0.148554825693654,0.120612012743051,185.8157503488,"CHH","1:19918533:19920534","CGI_shore"]
[1,19920395,19920514,120,37,0.269166838436706,0.148554825693654,0.120612012743051,185.8157503488,"CHH","1:19919552:19921553","CGI_shore"]
[1,19980701,19980791,91,17,0.491444220377659,0.732942752077558,-0.2414985316999,-77.6928685942639,"CG","1:19980082:19983370","CGI"]
[1,19982658,19982822,165,59,0.201344301964341,0.0972016705049087,0.104142631459432,299.714106382965,"CHH","1:19980082:19983370","CGI"]
[1,19983347,19983474,128,52,0.170067090130085,0.0177518177665738,0.152315272363511,235.260993880787,"CHH","1:19980082:19983370","CGI"]
[1,19983347,19983474,128,52,0.170067090130085,0.0177518177665738,0.152315272363511,235.260993880787,"CHH","1:19983370:19985371","CGI_shore"]
[1,20064668,20064751,84,18,0.335718324072705,0.227682741915234,0.108035582157472,79.3330862489834,"CHH","1:20063744:20065744","CGI_shore"]
[1,20064668,20064751,84,18,0.335718324072705,0.227682741915234,0.108035582157472,79.3330862489834,"CHH","Os01g0543100","intron","class III peroxidase 17","Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) && sp|Q9FJZ9|PER72_ARATH Peroxidase 72 OS=Arabidopsis thaliana OX=3702 GN=PER72 PE=1 SV=1 && PF00141:Peroxidase"]
[1,20090057,20090202,146,53,0.148084958190442,0.073552715927031,0.074532242263411,232.621632311287,"CHH","1:20089953:20091954","CGI_shore"]
[1,20147320,20147390,71,27,0.0357080734340566,0.198023284892119,-0.162315211458062,-174.626736174548,"CHH","1:20146712:20148713","CGI_shore"]
[1,20147320,20147390,71,27,0.0357080734340566,0.198023284892119,-0.162315211458062,-174.626736174548,"CHH","1:20147123:20148123","CGI"]
[1,20149669,20149819,151,50,0.0805300427557529,0.0271532261298927,0.0533768166258601,244.491081306511,"CHH","1:20148123:20150124","CGI_shore"]
[1,20218504,20218714,211,59,0.314416566165258,0.119705441157723,0.194711125007535,373.703717683167,"CHH","1:20218463:20220463","CGI_shore"]
[1,20234242,20234490,249,89,0.109216413456998,0.0476489658998823,0.0615674475571156,396.045921127434,"CHH","1:20234474:20235829","CGI"]
[1,20234242,20234490,249,89,0.109216413456998,0.0476489658998823,0.0615674475571156,396.045921127434,"CHH","1:20232473:20234473","CGI_shore"]
[1,20239678,20239887,210,59,0.232346940232265,0.103685468686245,0.128661471546021,334.246068509964,"CHH","1:20238749:20240749","CGI_shore"]
[1,20248164,20248231,68,28,0.0531125115816187,0.142624111182132,-0.0895115996005135,-151.261812658328,"CHH","1:20247908:20249909","CGI_shore"]
[1,20255996,20256101,106,16,0.228272045919029,0.488731016015738,-0.260458970096709,-86.9738996313218,"CHG","Os01g0545550","promoter","Os01g0545550","Hypothetical protein && sp|O81906|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana OX=3702 GN=B120 PE=2 SV=1 && PF01657:Salt stress response/antifungal"]
[1,20360954,20361149,196,54,0.143850634650312,0.0621101345469511,0.0817405001033613,269.297625801227,"CHH","Os01g0547200","intron","Os01g0547200","Zinc finger, BED-type predicted domain containing protein && sp|Q6ZJM9|EHD3_ORYSJ PHD finger protein EHD3 OS=Oryza sativa subsp. japonica OX=39947 GN=EHD3 PE=1 SV=1 && -"]
[1,20478157,20478351,195,69,0.179118696354755,0.0349234489896446,0.14419524736511,381.472608356858,"CHH","1:20477849:20479220","CGI"]
[1,20600036,20600100,65,15,0.338027024879831,0.50581193182783,-0.167784906947998,-59.2188538884679,"CG","Os01g0550300","exon","Os01g0550300","Similar to Gda-1 protein && sp|C6TAQ0|NRPB_SOYBN DCD domain-containing protein NRP-B OS=Glycine max OX=3847 GN=NRP-B PE=2 SV=1 && PF10539:Development and cell death domain"]
[1,20622750,20622838,89,8,0.305505886595068,0.0525561779593254,0.252949708635743,39.4471104634466,"CHG","1:20621254:20623255","CGI_shore"]
[1,20622750,20622838,89,8,0.305505886595068,0.0525561779593254,0.252949708635743,39.4471104634466,"CHG","1:20622534:20624535","CGI_shore"]
[1,20634883,20634954,72,25,0.0136227336728943,0.0970041465459697,-0.0833814128730755,-151.814113474874,"CHH","1:20632942:20634942","CGI_shore"]
[1,20634883,20634954,72,25,0.0136227336728943,0.0970041465459697,-0.0833814128730755,-151.814113474874,"CHH","1:20634943:20635692","CGI"]
[1,20637230,20637364,135,40,0.271265232618981,0.067913618794085,0.203351613824896,256.689274590962,"CHH","1:20635692:20637693","CGI_shore"]
[1,20637230,20637364,135,40,0.271265232618981,0.067913618794085,0.203351613824896,256.689274590962,"CHH","1:20637338:20639338","CGI_shore"]
[1,20670127,20670223,97,14,0.602442348655996,0.873846878961964,-0.271404530305968,-71.317424028167,"CG","Os01g0551100","intron","Os01g0551100","Ribonuclease III domain containing protein && sp|Q5JK90|RTL1_ORYSJ Ribonuclease 3-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0551100 PE=2 SV=1 && PF00636:Ribonuclease III domain"]
[1,20670127,20670223,97,14,0.602442348655996,0.873846878961964,-0.271404530305968,-71.317424028167,"CG","1:20668519:20670519","CGI_shore"]
[1,20734328,20734428,101,13,0.560005271663002,0.013103733752381,0.546901537910621,94.7267908850674,"CHH","1:20733960:20735961","CGI_shore"]
[1,20735258,20735418,161,32,0.34369502947973,0.14063747431474,0.203057555164989,220.080025547419,"CHH","1:20733960:20735961","CGI_shore"]
[1,20737108,20737288,181,50,0.27738953059804,0.172451328934407,0.104938201663632,226.402762232868,"CHH","1:20736398:20738398","CGI_shore"]
[1,20737108,20737288,181,50,0.27738953059804,0.172451328934407,0.104938201663632,226.402762232868,"CHH","Os01g0552300","promoter","protein phosphatase 2C05, protein phosphatase 2C 05, protein phosphatase 2C5, protein phosphatase 2C 5, protein phosphatase 9","Similar to Protein phosphatase-2C && sp|Q5JKN1|P2C05_ORYSJ Probable protein phosphatase 2C 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0552300 PE=2 SV=1 && PF00481:Protein phosphatase 2C"]
[1,20778521,20778638,118,42,0.0925939145411258,0.035686502739577,0.0569074118015488,189.168423091038,"CHH","1:20777181:20779181","CGI_shore"]
[1,20778521,20778638,118,42,0.0925939145411258,0.035686502739577,0.0569074118015488,189.168423091038,"CHH","1:20778513:20780514","CGI_shore"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","Os01g0553901","utr5","Os01g0553901","HGWP repeat domain containing protein && - && PF03578:HGWP repeat"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","1:20841254:20843255","CGI_shore"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","1:20838259:20841254","CGI"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","Os01g0553901","exon","Os01g0553901","HGWP repeat domain containing protein && - && PF03578:HGWP repeat"]
[1,20880908,20881093,186,62,0.829052457123557,0.620549622744841,0.208502834378716,318.302502098641,"CG","1:20879745:20881623","CGI"]
[1,20945952,20946211,260,37,0.278374915873577,0.0624870904680253,0.215887825405552,255.079530547884,"CHH","Os01g0555300","promoter","Os01g0555300","Conserved hypothetical protein && - && -"]
[1,20945952,20946211,260,37,0.278374915873577,0.0624870904680253,0.215887825405552,255.079530547884,"CHH","1:20945762:20947763","CGI_shore"]
[1,20945952,20946211,260,37,0.278374915873577,0.0624870904680253,0.215887825405552,255.079530547884,"CHH","1:20945925:20947925","CGI_shore"]
[1,20946073,20946182,110,10,0.758063911003008,0.290855173024706,0.467208737978301,61.2148943420277,"CHG","Os01g0555300","promoter","Os01g0555300","Conserved hypothetical protein && - && -"]
[1,20946073,20946182,110,10,0.758063911003008,0.290855173024706,0.467208737978301,61.2148943420277,"CHG","1:20945762:20947763","CGI_shore"]
[1,20946073,20946182,110,10,0.758063911003008,0.290855173024706,0.467208737978301,61.2148943420277,"CHG","1:20945925:20947925","CGI_shore"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","Os01g0555300","promoter","Os01g0555300","Conserved hypothetical protein && - && -"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","1:20945762:20947763","CGI_shore"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","1:20945925:20947925","CGI_shore"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","1:20947148:20949148","CGI_shore"]
[1,20949150,20949543,394,122,0.449898455417345,0.165403298997244,0.284495156420102,1034.84731540444,"CG","1:20948183:20950184","CGI_shore"]
[1,20949150,20949543,394,122,0.449898455417345,0.165403298997244,0.284495156420102,1034.84731540444,"CG","1:20949149:20949551","CGI"]
[1,20949310,20949457,148,23,0.234368574625076,0.056151993349484,0.178216581275592,121.594048983881,"CHG","1:20948183:20950184","CGI_shore"]
[1,20949310,20949457,148,23,0.234368574625076,0.056151993349484,0.178216581275592,121.594048983881,"CHG","1:20949149:20949551","CGI"]
[1,20998437,20998585,149,35,0.277886749292303,0.0549758802167469,0.222910869075556,184.410288572893,"CHH","1:20998192:21000192","CGI_shore"]
[1,21136044,21136284,241,83,0.16970959447846,0.0641487635994938,0.105560830878966,411.87252323771,"CHH","1:21135645:21137646","CGI_shore"]
[1,21136044,21136284,241,83,0.16970959447846,0.0641487635994938,0.105560830878966,411.87252323771,"CHH","1:21136208:21136464","CGI"]
[1,21136044,21136284,241,83,0.16970959447846,0.0641487635994938,0.105560830878966,411.87252323771,"CHH","1:21134207:21136207","CGI_shore"]
[1,21204658,21204756,99,17,0.559359817633057,0.89994102262011,-0.340581204987053,-101.100387986732,"CG","1:21204520:21206520","CGI_shore"]
[1,21204658,21204756,99,17,0.559359817633057,0.89994102262011,-0.340581204987053,-101.100387986732,"CG","1:21204599:21204902","CGI"]
[1,21237658,21237774,117,38,0.289480272710457,0.162202917994938,0.127277354715519,210.414836443451,"CHH","1:21236329:21238330","CGI_shore"]
[1,21237658,21237774,117,38,0.289480272710457,0.162202917994938,0.127277354715519,210.414836443451,"CHH","1:21237540:21239540","CGI_shore"]
[1,21240498,21240599,102,11,0.275939862626745,0.513713403866221,-0.237773541239476,-44.7039749623747,"CG","1:21239051:21241051","CGI_shore"]
[1,21240498,21240599,102,11,0.275939862626745,0.513713403866221,-0.237773541239476,-44.7039749623747,"CG","1:21239882:21241883","CGI_shore"]
[1,21259639,21259786,148,40,0.305583514090051,0.179216030937247,0.126367483152804,206.433295601456,"CHH","1:21258460:21260461","CGI_shore"]
[1,21259639,21259786,148,40,0.305583514090051,0.179216030937247,0.126367483152804,206.433295601456,"CHH","1:21259596:21261596","CGI_shore"]
[1,21264223,21264402,180,69,0.199655882250492,0.108285716516035,0.0913701657344569,338.636975640454,"CHH","1:21263955:21265955","CGI_shore"]
[1,21264223,21264402,180,69,0.199655882250492,0.108285716516035,0.0913701657344569,338.636975640454,"CHH","1:21263981:21265982","CGI_shore"]
[1,21271355,21271498,144,33,0.236087296518144,0.122186538308721,0.113900758209422,157.379286619028,"CHH","1:21270582:21272582","CGI_shore"]
[1,21271355,21271498,144,33,0.236087296518144,0.122186538308721,0.113900758209422,157.379286619028,"CHH","Os01g0560000","promoter","ILL1","Similar to Auxin amidohydrolase && sp|Q8S9S4|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ILL1 PE=2 SV=1 && PF01546:Peptidase family M20/M25/M40|PF07687:Peptidase dimerisation domain"]
[1,21271355,21271498,144,33,0.236087296518144,0.122186538308721,0.113900758209422,157.379286619028,"CHH","1:21270864:21272865","CGI_shore"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","1:21270582:21272582","CGI_shore"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","Os01g0560000","promoter","ILL1","Similar to Auxin amidohydrolase && sp|Q8S9S4|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ILL1 PE=2 SV=1 && PF01546:Peptidase family M20/M25/M40|PF07687:Peptidase dimerisation domain"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","1:21270864:21272865","CGI_shore"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","1:21272583:21273799","CGI"]
[1,21273100,21273291,192,52,0.369304157920244,0.206700392013054,0.16260376590719,283.036463588263,"CG","1:21272583:21273799","CGI"]
[1,21273663,21274185,523,174,0.247898055667258,0.11245922123667,0.135438834430588,1056.94062412005,"CHH","1:21272583:21273799","CGI"]
[1,21273663,21274185,523,174,0.247898055667258,0.11245922123667,0.135438834430588,1056.94062412005,"CHH","Os01g0560200","promoter","Os01g0560200","Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13) && sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus|PF05008:Vesicle transport v-SNARE protein N-terminus"]
[1,21273663,21274185,523,174,0.247898055667258,0.11245922123667,0.135438834430588,1056.94062412005,"CHH","1:21273799:21275800","CGI_shore"]
[1,21274238,21274322,85,17,0.13727675561593,0.0378003784790398,0.09947637713689,87.748783073777,"CHH","Os01g0560200","promoter","Os01g0560200","Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13) && sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus|PF05008:Vesicle transport v-SNARE protein N-terminus"]
[1,21274238,21274322,85,17,0.13727675561593,0.0378003784790398,0.09947637713689,87.748783073777,"CHH","1:21273799:21275800","CGI_shore"]
[1,21279061,21279305,245,59,0.131322783472058,0.0410573908227483,0.0902653926493096,298.435536811449,"CHH","1:21278291:21280291","CGI_shore"]
[1,21280297,21280398,102,17,0.28147453456337,0.604014524410918,-0.322539989847548,-84.3863385146069,"CHG","1:21280292:21281246","CGI"]
[1,21285455,21285651,197,47,0.704363105820897,0.497055663791858,0.20730744202904,273.771294383381,"CG","1:21283890:21286727","CGI"]
[1,21285793,21285910,118,41,0.105532175656603,0.0331106050831421,0.0724215705734613,190.626803048367,"CHH","1:21283890:21286727","CGI"]
[1,21288829,21288929,101,39,0.0641980080353359,0.0173576428058203,0.0468403652295156,170.399094704038,"CHH","1:21287938:21289938","CGI_shore"]
[1,21301643,21301798,156,44,0.870864944606348,0.660245517265235,0.210619427341114,203.839023979982,"CG","1:21300442:21302443","CGI_shore"]
[1,21301643,21301798,156,44,0.870864944606348,0.660245517265235,0.210619427341114,203.839023979982,"CG","1:21301286:21301819","CGI"]
[1,21310347,21310403,57,21,0.565245659988964,0.804014988114491,-0.238769328125527,-99.3719276450338,"CG","1:21309906:21310576","CGI"]
[1,21310664,21310846,183,51,0.246923251500538,0.119082343206332,0.127840908294206,253.342785234575,"CHH","1:21310576:21312577","CGI_shore"]
[1,21311630,21311685,56,18,0.13266276012359,0.0246768351569946,0.107985924966596,100.548331036377,"CHH","1:21310576:21312577","CGI_shore"]
[1,21360434,21360519,86,18,0.16423840864332,0.0763633053257714,0.0878751033175488,83.9380397145018,"CHH","1:21358587:21360587","CGI_shore"]
[1,21360434,21360519,86,18,0.16423840864332,0.0763633053257714,0.0878751033175488,83.9380397145018,"CHH","Os01g0561950","promoter","Os01g0561950","Hypothetical protein && - && PF03140:Plant protein of unknown function"]
[1,21360642,21360794,153,28,0.175261151396502,0.393749496705944,-0.218488345309441,-130.258333912201,"CHG","Os01g0561950","promoter","Os01g0561950","Hypothetical protein && - && PF03140:Plant protein of unknown function"]
[1,21360642,21360794,153,28,0.175261151396502,0.393749496705944,-0.218488345309441,-130.258333912201,"CHG","1:21360588:21375938","CGI"]
[1,21378661,21378858,198,24,0.271735653558921,0.499891216833844,-0.228155563274923,-123.652115360956,"CHG","1:21377828:21379828","CGI_shore"]
[1,21390012,21390075,64,15,0.438235354476647,0.274151785848826,0.164083568627821,70.2928401409303,"CHH","1:21388819:21390819","CGI_shore"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","Os01g0564400","promoter","Os01g0564400","Conserved hypothetical protein && - && -"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","1:21537751:21539752","CGI_shore"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","1:21539399:21539687","CGI"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","Os01g0564300","intron","FK506 binding protein 46","Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein && sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FKBP65 PE=1 SV=1 && PF00254:FKBP-type peptidyl-prolyl cis-trans isomerase"]
[1,21592980,21593072,93,33,0.0962092710809837,0.0209149620178018,0.0752943090631819,254.37659435339,"CHH","1:21591003:21593003","CGI_shore"]
[1,21592980,21593072,93,33,0.0962092710809837,0.0209149620178018,0.0752943090631819,254.37659435339,"CHH","1:21593004:21593343","CGI"]
[1,21592980,21593072,93,33,0.0962092710809837,0.0209149620178018,0.0752943090631819,254.37659435339,"CHH","1:21592361:21594362","CGI_shore"]
[1,21595027,21595111,85,13,0.336330818961943,0.10379398774793,0.232536831214012,73.753268251442,"CHH","1:21593343:21595344","CGI_shore"]
[1,21595027,21595111,85,13,0.336330818961943,0.10379398774793,0.232536831214012,73.753268251442,"CHH","1:21593902:21595902","CGI_shore"]
[1,21603017,21603396,380,81,0.415592945647095,0.204139329138422,0.211453616508673,507.472382922471,"CHH","1:21601671:21603671","CGI_shore"]
[1,21603017,21603396,380,81,0.415592945647095,0.204139329138422,0.211453616508673,507.472382922471,"CHH","1:21601712:21603713","CGI_shore"]
[1,21661047,21661253,207,36,0.363213209287963,0.206660002406248,0.156553206881715,166.622435761514,"CHH","1:21661228:21663402","CGI"]
[1,21661047,21661253,207,36,0.363213209287963,0.206660002406248,0.156553206881715,166.622435761514,"CHH","1:21659227:21661227","CGI_shore"]
[1,21665386,21665452,67,30,0.178445808775667,0.0822990118834921,0.0961467968921753,151.934114428955,"CHH","1:21663402:21665403","CGI_shore"]
[1,21665386,21665452,67,30,0.178445808775667,0.0822990118834921,0.0961467968921753,151.934114428955,"CHH","1:21664258:21666258","CGI_shore"]
[1,21680903,21680996,94,41,0.694363148709745,0.896732096095787,-0.202368947386042,-222.019702227791,"CG","1:21680422:21681384","CGI"]
[1,21690593,21690790,198,51,0.305616288500812,0.190037220575103,0.115579067925709,235.288272617657,"CHH","Os01g0566800","promoter","basic helix-loop-helix protein 117","Hypothetical conserved gene && sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1 && PF00010:Helix-loop-helix DNA-binding domain"]
[1,21690593,21690790,198,51,0.305616288500812,0.190037220575103,0.115579067925709,235.288272617657,"CHH","1:21689216:21691217","CGI_shore"]
[1,21695134,21695293,160,39,0.342520325896875,0.186374198659823,0.156146127237051,189.737026037427,"CHH","1:21694212:21696212","CGI_shore"]
[1,21704590,21704718,129,44,0.159461795848153,0.0270929123708504,0.132368883477302,246.192929145975,"CHH","1:21703055:21705055","CGI_shore"]
[1,21704590,21704718,129,44,0.159461795848153,0.0270929123708504,0.132368883477302,246.192929145975,"CHH","Os01g0566900","promoter","Os01g0566900","Similar to 3'-5' exonuclease domain-containing protein-like && - && PF01612:3'-5' exonuclease|PF00013:KH domain"]
[1,21704925,21704984,60,18,0.203475491912678,0.0615677555701416,0.141907736342537,103.612799788736,"CHH","1:21703055:21705055","CGI_shore"]
[1,21704925,21704984,60,18,0.203475491912678,0.0615677555701416,0.141907736342537,103.612799788736,"CHH","Os01g0566900","promoter","Os01g0566900","Similar to 3'-5' exonuclease domain-containing protein-like && - && PF01612:3'-5' exonuclease|PF00013:KH domain"]
[1,21719494,21719564,71,15,0.10835872143013,0.0264419643965757,0.0819167570335541,74.6151470298773,"CHH","Os01g0567500","promoter","Monosaccharide transporter 8","Similar to Monosaccharide transporter 3 && sp|Q94EC4|MST8_ORYSJ Sugar transport protein MST8 OS=Oryza sativa subsp. japonica OX=39947 GN=MST8 PE=2 SV=2 && PF00083:Sugar (and other) transporter"]
[1,21797539,21797639,101,21,0.259860410758082,0.0581811911781537,0.201679219579928,101.35987469876,"CHH","Os01g0568800","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 37","Protein kinase, catalytic domain domain containing protein && sp|Q9M0X5|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CRK25 PE=3 SV=1 && PF01657:Salt stress response/antifungal"]
[1,21804695,21804772,78,22,0.193262310223561,0.0499065201876161,0.143355790035945,92.3684816633768,"CHH","Os01g0568950","promoter","Os01g0568950","Similar to barren inflorescence2 && - && -"]
[1,21812835,21812887,53,15,0.109303953914892,0.0119006591034595,0.0974032948114324,74.8975444454673,"CHH","1:21811376:21813376","CGI_shore"]
[1,21812835,21812887,53,15,0.109303953914892,0.0119006591034595,0.0974032948114324,74.8975444454673,"CHH","Os01g0569200","promoter","Os01g0569200","Domain of unknown function DUF1618 domain containing protein && - && -"]
[1,21841407,21841457,51,13,0.0223700757055094,0.112765848821309,-0.0903957731157994,-72.4399562655905,"CHH","1:21839983:21841983","CGI_shore"]
[1,21884834,21885087,254,53,0.0980078959088448,0.0260566033621153,0.0719512925467295,248.352426454916,"CHH","1:21884877:21886877","CGI_shore"]
[1,21889241,21889359,119,39,0.167351044467888,0.0775215364008349,0.0898295080670526,190.616697358718,"CHH","1:21886878:21893874","CGI"]
[1,21889241,21889359,119,39,0.167351044467888,0.0775215364008349,0.0898295080670526,190.616697358718,"CHH","Os01g0570601","promoter","Os01g0570601","Conserved hypothetical protein && - && -"]
[1,21904857,21905005,149,36,0.412053745046908,0.214831933076927,0.197221811969982,199.683149232374,"CHH","Os01g0570800","promoter","Os01g0570800","IQ calmodulin-binding region domain containing protein && sp|O82645|IQM1_ARATH IQ domain-containing protein IQM1 OS=Arabidopsis thaliana OX=3702 GN=IQM1 PE=1 SV=1 && -"]
[1,22036478,22036532,55,15,0.143183565124627,0.0329207308308027,0.110262834293825,71.1759733610931,"CHH","1:22035861:22051376","CGI"]
[1,22109800,22109874,75,18,0.106829532079975,3.5966962908429E-3,0.103232835789132,110.772289219625,"CHH","1:22107964:22109964","CGI_shore"]
[1,22109800,22109874,75,18,0.106829532079975,3.5966962908429E-3,0.103232835789132,110.772289219625,"CHH","1:22108800:22110800","CGI_shore"]
[1,22240094,22240159,66,19,0.200457001987707,0.0877535916576716,0.112703410330036,83.5024310815426,"CHH","1:22239906:22241906","CGI_shore"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","1:22315402:22323577","CGI"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","1:22322955:22324955","CGI_shore"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","Os01g0577300","promoter","TRANSCRIPTIONAL ACTIVATOR B","Similar to Rb (Fragment) && sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays OX=4577 GN=LC PE=1 SV=1 && PF00010:Helix-loop-helix DNA-binding domain"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","1:22323577:22325578","CGI_shore"]
[1,22358961,22359162,202,68,0.388714482270893,0.244687640800248,0.144026841470646,312.715993635807,"CHH","Os01g0578000","promoter","DNA REPAIR PROTEIN RAD51C","DNA repair protein, DNA double-strand break repair, synaptonemal complex assembl && sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=RAD51C PE=1 SV=2 && -"]
[1,22358961,22359162,202,68,0.388714482270893,0.244687640800248,0.144026841470646,312.715993635807,"CHH","1:22358390:22360391","CGI_shore"]
[1,22358961,22359162,202,68,0.388714482270893,0.244687640800248,0.144026841470646,312.715993635807,"CHH","1:22358491:22360491","CGI_shore"]
[1,22363932,22364072,141,48,0.274894892006526,0.153761440321051,0.121133451685475,217.243562881033,"CHH","1:22362144:22364145","CGI_shore"]
[1,22383154,22383234,81,18,0.107095154031511,0.0328373661297716,0.0742577879017394,77.4557770274339,"CHH","1:22381254:22383254","CGI_shore"]
[1,22383154,22383234,81,18,0.107095154031511,0.0328373661297716,0.0742577879017394,77.4557770274339,"CHH","1:22383041:22385041","CGI_shore"]
[1,22383154,22383234,81,18,0.107095154031511,0.0328373661297716,0.0742577879017394,77.4557770274339,"CHH","Os01g0578800","promoter","Os_F0791","Conserved hypothetical protein && - && -"]
[1,22390236,22390352,117,42,0.336220728025592,0.193152582394376,0.143068145631216,198.627717580206,"CHH","1:22388756:22390756","CGI_shore"]
[1,22390236,22390352,117,42,0.336220728025592,0.193152582394376,0.143068145631216,198.627717580206,"CHH","1:22389357:22391358","CGI_shore"]
[1,22395213,22395356,144,43,0.149918378502489,0.0712611172700824,0.0786572612324063,182.013874303022,"CHH","1:22393387:22395388","CGI_shore"]
[1,22395213,22395356,144,43,0.149918378502489,0.0712611172700824,0.0786572612324063,182.013874303022,"CHH","1:22393583:22395583","CGI_shore"]
[1,22408585,22408720,136,48,0.082424358370519,0.0215982723413408,0.0608260860291782,231.104933869618,"CHH","1:22401429:22412181","CGI"]
[1,22415622,22415820,199,13,0.360106014208679,0.723852871583898,-0.36374685737522,-75.2946991540269,"CG","1:22414767:22416767","CGI_shore"]
[1,22431818,22431989,172,32,0.442261872575413,0.246975580412157,0.195286292163256,173.821378124938,"CHH","1:22431321:22433321","CGI_shore"]
[1,22432466,22432784,319,89,0.380964760660363,0.182122131459076,0.198842629201287,620.675523826519,"CHH","1:22431321:22433321","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","1:22433361:22435361","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","1:22433678:22435679","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","1:22433900:22435900","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","Os01g0579800","promoter","Os01g0579800","Conserved hypothetical protein && - && -"]
[1,22473401,22473477,77,9,0.0758522316927435,0.200392800014955,-0.124540568322211,-45.6886074720416,"CG","Os01g0580300","utr3","Os01g0580300","Conserved hypothetical protein && - && -"]
[1,22473401,22473477,77,9,0.0758522316927435,0.200392800014955,-0.124540568322211,-45.6886074720416,"CG","Os01g0580300","exon","Os01g0580300","Conserved hypothetical protein && - && -"]
[1,22473401,22473477,77,9,0.0758522316927435,0.200392800014955,-0.124540568322211,-45.6886074720416,"CG","1:22473296:22474343","CGI"]
[1,22629175,22629319,145,29,0.243322709694611,0.0876909275847524,0.155631782109858,160.557646030626,"CHH","Os01g0583200","promoter","Os01g0583200","Zinc finger, C2H2, LYAR-type domain containing protein && sp|O64571|UBA1C_ARATH UBP1-associated proteins 1C OS=Arabidopsis thaliana OX=3702 GN=UBA1C PE=3 SV=2 && PF12874:Zinc-finger of C2H2 type|PF08790:LYAR-type C2HC zinc finger"]
[1,22629175,22629319,145,29,0.243322709694611,0.0876909275847524,0.155631782109858,160.557646030626,"CHH","1:22628070:22630071","CGI_shore"]
[1,22632093,22632474,382,86,0.297753933141181,0.141457659393447,0.156296273747734,434.482803653631,"CHH","1:22631154:22633154","CGI_shore"]
[1,22633815,22633866,52,16,0.0398725961143837,0.142885293472666,-0.103012697358282,-72.6594807209194,"CHH","1:22633155:22642655","CGI"]
[1,22633815,22633866,52,16,0.0398725961143837,0.142885293472666,-0.103012697358282,-72.6594807209194,"CHH","Os01g0583300","intron","Os_F0727","Zinc finger, C2H2, LYAR-type domain containing protein && - && -"]
[1,22666691,22666906,216,37,0.360032513168459,0.0744227494417643,0.285609763726695,186.96601445729,"CG","1:22665971:22666907","CGI"]
[1,22681980,22682103,124,22,0.311842532251533,0.0716651329107344,0.240177399340798,106.342182268687,"CHH","Os01g0584250","promoter","Os01g0584250","Hypothetical gene && sp|Q39160|MYO5_ARATH Myosin-5 OS=Arabidopsis thaliana OX=3702 GN=XI-1 PE=1 SV=1 && PF01843:DIL domain"]
[1,22681980,22682103,124,22,0.311842532251533,0.0716651329107344,0.240177399340798,106.342182268687,"CHH","1:22681630:22683631","CGI_shore"]
[1,22765533,22765680,148,22,0.200955572623858,0.0464605009589195,0.154495071664938,106.188714347049,"CHH","1:22764855:22766855","CGI_shore"]
[1,22790911,22791115,205,46,0.481142995945005,0.216679700678755,0.26446329526625,315.80616881432,"CHH","Os01g0586000","promoter","Os01g0586000","Similar to H0714H04.7 protein && - && -"]
[1,22790911,22791115,205,46,0.481142995945005,0.216679700678755,0.26446329526625,315.80616881432,"CHH","1:22789114:22791114","CGI_shore"]
[1,22903833,22903951,119,26,0.0582347056997656,0.00654965978575566,0.0516850459140099,122.932573798527,"CHH","Os01g0588000","promoter","Os01g0588000","Heat shock protein Hsp20 domain containing protein && - && PF00011:Hsp20/alpha crystallin family"]
[1,23012915,23013078,164,31,0.186865033480173,0.0653061719730118,0.121558861507162,141.679668439128,"CHH","1:23012405:23014406","CGI_shore"]
[1,23020945,23021030,86,16,0.167262045314039,0.0206372305426696,0.14662481477137,85.3462589056024,"CHH","1:23020097:23022098","CGI_shore"]
[1,23075271,23075404,134,41,0.411225070007918,0.142620641734555,0.268604428273364,208.04506488076,"CHH","1:23073949:23075950","CGI_shore"]
[1,23075271,23075404,134,41,0.411225070007918,0.142620641734555,0.268604428273364,208.04506488076,"CHH","Os01g0590700","intron","Os01g0590700","Peptidase M41 domain containing protein && sp|A2ZVG7|FTSH9_ORYSJ ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH9 PE=3 SV=1 && PF01434:Peptidase family M41"]
[1,23116348,23116449,102,35,0.0939862401233667,0.0280097102351998,0.0659765298881669,184.984591453137,"CHH","Os01g0591300","intron","Os01g0591300","Similar to Cytosolic aldehyde dehydrogenase RF2D && sp|Q56YU0|AL2C4_ARATH Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2 && PF00171:Aldehyde dehydrogenase family"]
[1,23116348,23116449,102,35,0.0939862401233667,0.0280097102351998,0.0659765298881669,184.984591453137,"CHH","1:23115332:23117332","CGI_shore"]
[1,23116521,23116675,155,36,0.202510994450494,0.0812271153994972,0.121283879050997,197.751872041451,"CHH","Os01g0591300","intron","Os01g0591300","Similar to Cytosolic aldehyde dehydrogenase RF2D && sp|Q56YU0|AL2C4_ARATH Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2 && PF00171:Aldehyde dehydrogenase family"]
[1,23116521,23116675,155,36,0.202510994450494,0.0812271153994972,0.121283879050997,197.751872041451,"CHH","1:23115332:23117332","CGI_shore"]
[1,23138554,23138653,100,19,0.142030294957797,0.0166233422167762,0.125406952741021,87.201906356908,"CHH","1:23136101:23141671","CGI"]
[1,23171628,23171835,208,32,0.440584011614723,0.24310096974394,0.197483041870784,162.564968895073,"CHG","1:23171100:23172484","CGI"]
[1,23171628,23171835,208,32,0.440584011614723,0.24310096974394,0.197483041870784,162.564968895073,"CHG","1:23171807:23173807","CGI_shore"]
[1,23171633,23171851,219,35,0.698971984798823,0.504271305652443,0.19470067914638,152.21126801157,"CG","1:23171100:23172484","CGI"]
[1,23171633,23171851,219,35,0.698971984798823,0.504271305652443,0.19470067914638,152.21126801157,"CG","1:23171807:23173807","CGI_shore"]
[1,23207256,23207418,163,50,0.0692192579958038,0.00682850716537962,0.0623907508304242,256.196828876812,"CHH","Os01g0593000","promoter","Os01g0593000","Similar to predicted protein && - && -"]
[1,23221826,23221907,82,17,0.2833846725958,0.130876509917257,0.152508162678543,97.3159120269254,"CHH","1:23220042:23222043","CGI_shore"]
[1,23326944,23327073,130,35,0.171429083949755,0.0231267635331499,0.148302320416605,194.741397213434,"CHH","1:23326339:23328340","CGI_shore"]
[1,23326944,23327073,130,35,0.171429083949755,0.0231267635331499,0.148302320416605,194.741397213434,"CHH","1:23326722:23328722","CGI_shore"]
[1,23353215,23353316,102,24,0.330877975395671,0.2110838269638,0.119794148431871,111.759516850212,"CHH","Os01g0595800","promoter","F-box protein 22","FBD domain containing protein && - && PF08387:FBD"]
[1,23353215,23353316,102,24,0.330877975395671,0.2110838269638,0.119794148431871,111.759516850212,"CHH","1:23352827:23354828","CGI_shore"]
[1,23353215,23353316,102,24,0.330877975395671,0.2110838269638,0.119794148431871,111.759516850212,"CHH","Os01g0595725","promoter","Os01g0595725","Hypothetical protein && - && PF00646:F-box domain"]
[1,23363322,23363425,104,29,0.243757271554694,0.0727996389843018,0.170957632570392,206.204980814536,"CHH","1:23361580:23363581","CGI_shore"]
[1,23363322,23363425,104,29,0.243757271554694,0.0727996389843018,0.170957632570392,206.204980814536,"CHH","1:23361798:23363798","CGI_shore"]
[1,23363322,23363425,104,29,0.243757271554694,0.0727996389843018,0.170957632570392,206.204980814536,"CHH","Os01g0596100","promoter","F-box protein 25","Cyclin-like F-box domain containing protein && sp|Q9FNJ1|FDL47_ARATH F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22700 PE=2 SV=2 && PF08387:FBD"]
[1,23445984,23446127,144,43,0.239037826516295,0.127642223192003,0.111395603324292,203.931876821587,"CHH","1:23444668:23446668","CGI_shore"]
[1,23445984,23446127,144,43,0.239037826516295,0.127642223192003,0.111395603324292,203.931876821587,"CHH","Os01g0597600","promoter","amino acid transporter-like 15","Amino acid transporter, transmembrane domain containing protein && sp|F4J1Q9|AVT1I_ARATH Amino acid transporter AVT1I OS=Arabidopsis thaliana OX=3702 GN=AVT1I PE=3 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[1,23445984,23446127,144,43,0.239037826516295,0.127642223192003,0.111395603324292,203.931876821587,"CHH","1:23445462:23447463","CGI_shore"]
[1,23512893,23513012,120,40,0.329873230693527,0.186657134948693,0.143216095744833,206.052319775804,"CHH","1:23511224:23518384","CGI"]
[1,23512893,23513012,120,40,0.329873230693527,0.186657134948693,0.143216095744833,206.052319775804,"CHH","Os01g0598400","promoter","F-box protein 28","Cyclin-like F-box domain containing protein && sp|Q9SAG4|FB93_ARATH F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 && PF08387:FBD"]
[1,23512893,23513012,120,40,0.329873230693527,0.186657134948693,0.143216095744833,206.052319775804,"CHH","Os01g0598600","promoter","Os01g0598600","Peptidase A1 domain containing protein && sp|Q9LNJ3|APF2_ARATH Aspartyl protease family protein 2 OS=Arabidopsis thaliana OX=3702 GN=APF2 PE=2 SV=1 && PF14543:Xylanase inhibitor N-terminal|PF14541:Xylanase inhibitor C-terminal"]
[1,23518482,23518604,123,31,0.0789851770696335,0.269000410097805,-0.190015233028171,-160.838174800041,"CHH","1:23518384:23520385","CGI_shore"]
[1,23586533,23586676,144,27,0.195476697688657,0.0321303127548298,0.163346384933827,146.056958770791,"CHH","Os01g0600500","promoter","Os01g0600500","Similar to Phosphoethanolamine/phosphocholine phosphatase && sp|Q9SU92|PPSP3_ARATH Thiamine phosphate phosphatase-like protein OS=Arabidopsis thaliana OX=3702 GN=At4g29530 PE=1 SV=1 && PF06888:Putative Phosphatase"]
[1,23586533,23586676,144,27,0.195476697688657,0.0321303127548298,0.163346384933827,146.056958770791,"CHH","1:23584897:23608393","CGI"]
[1,23593528,23593585,58,17,0.408611607044335,0.254688966483996,0.153922640560338,75.0008453315105,"CHH","1:23584897:23608393","CGI"]
[1,23613932,23614158,227,55,0.282731537902862,0.167375596930796,0.115355940972066,252.898581435975,"CHH","1:23612595:23614595","CGI_shore"]
[1,23613932,23614158,227,55,0.282731537902862,0.167375596930796,0.115355940972066,252.898581435975,"CHH","Os01g0601000","intron","endosperm-specific gene 10","Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB domain containing protein && - && PF01544:CorA-like Mg2+ transporter protein"]
[1,23617863,23618246,384,97,0.241439956313985,0.108979101415849,0.132460854898135,499.625925180391,"CHH","1:23616222:23618223","CGI_shore"]
[1,23639050,23639127,78,19,0.064457401183793,0.00833386933703506,0.0561235318467579,92.6498454590065,"CHH","1:23638416:23640417","CGI_shore"]
[1,23639050,23639127,78,19,0.064457401183793,0.00833386933703506,0.0561235318467579,92.6498454590065,"CHH","Os01g0601651","intron","Os01g0601651","Plant disease resistance response protein domain containing protein && sp|Q67YM6|DIR11_ARATH Dirigent protein 11 OS=Arabidopsis thaliana OX=3702 GN=DIR11 PE=2 SV=1 && -"]
[1,23662078,23662165,88,21,0.806521928058666,0.547078981158343,0.259442946900323,86.8278686913735,"CG","1:23662057:23662805","CGI"]
[1,23684760,23684845,86,19,0.10442245612173,0.0133013103442855,0.0911211457774443,119.335958949905,"CHH","1:23682929:23684929","CGI_shore"]
[1,23684760,23684845,86,19,0.10442245612173,0.0133013103442855,0.0911211457774443,119.335958949905,"CHH","Os01g0602466","intron","Os01g0602466","Hypothetical protein && sp|A0A0S2IHL2|C7A39_KALSE Cytochrome P450 72A397 OS=Kalopanax septemlobus OX=228393 GN=CYP72A397 PE=1 SV=1 && -"]
[1,23684760,23684845,86,19,0.10442245612173,0.0133013103442855,0.0911211457774443,119.335958949905,"CHH","Os01g0602500","intron","P-450 72A33","Cytochrome P450 family protein && sp|W8JWW3|CA225_CATRO Cytochrome P450 72A225 OS=Catharanthus roseus OX=4058 GN=CYP72A225 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,23687359,23687479,121,23,0.15433505988795,0.0475193812130257,0.106815678674924,109.409456307656,"CHH","Os01g0602500","promoter","P-450 72A33","Cytochrome P450 family protein && sp|W8JWW3|CA225_CATRO Cytochrome P450 72A225 OS=Catharanthus roseus OX=4058 GN=CYP72A225 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,23687359,23687479,121,23,0.15433505988795,0.0475193812130257,0.106815678674924,109.409456307656,"CHH","1:23685395:23687396","CGI_shore"]
[1,23687359,23687479,121,23,0.15433505988795,0.0475193812130257,0.106815678674924,109.409456307656,"CHH","1:23686302:23688302","CGI_shore"]
[1,23687792,23687863,72,17,0.251792483594177,0.0982537597427541,0.153538723851423,91.8961323667699,"CHH","1:23686302:23688302","CGI_shore"]
[1,23692236,23692494,259,29,0.218403900957763,0.0142161110108753,0.204187789946888,174.668969609863,"CHH","1:23690721:23692722","CGI_shore"]
[1,23706178,23706364,187,55,0.134387817993412,0.0596954987849678,0.0746923192084439,243.903326353221,"CHH","1:23704383:23706384","CGI_shore"]
[1,23706178,23706364,187,55,0.134387817993412,0.0596954987849678,0.0746923192084439,243.903326353221,"CHH","1:23706235:23708235","CGI_shore"]
[1,23719596,23719700,105,16,0.57042031268048,0.20598811995649,0.36443219272399,94.9174099984525,"CHH","1:23717919:23719919","CGI_shore"]
[1,23719596,23719700,105,16,0.57042031268048,0.20598811995649,0.36443219272399,94.9174099984525,"CHH","1:23718429:23720429","CGI_shore"]
[1,23722569,23722729,161,16,0.352399252255135,0.636075622607477,-0.283676370352342,-96.382755786166,"CG","1:23720706:23722707","CGI_shore"]
[1,23831422,23831524,103,29,0.182829196440548,0.0761300112825312,0.106699185158017,170.686684775943,"CHH","1:23830236:23832237","CGI_shore"]
[1,23832066,23832187,122,22,0.276665676689591,0.0848442863511959,0.191821390338395,125.178613757076,"CHH","1:23830236:23832237","CGI_shore"]
[1,23862884,23863222,339,75,0.215653531503769,0.0802857403128972,0.135367791190872,435.094634900574,"CHH","1:23862633:23864633","CGI_shore"]
[1,23862884,23863222,339,75,0.215653531503769,0.0802857403128972,0.135367791190872,435.094634900574,"CHH","Os01g0605700","promoter","SWEET6B","MtN3 and saliva related transmembrane protein family protein && sp|Q8W0K2|SWT6B_ORYSJ Bidirectional sugar transporter SWEET6b OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6B PE=2 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","1:23877940:23879940","CGI_shore"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","Os01g0606000","exon","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","1:23878274:23880275","CGI_shore"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","Os01g0606000","intron","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","1:23871482:23878274","CGI"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","1:23877940:23879940","CGI_shore"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","Os01g0606000","exon","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","1:23878274:23880275","CGI_shore"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","Os01g0606000","intron","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23919432,23919684,253,92,0.065355499386142,0.229796611451889,-0.164441112065747,-759.670367047345,"CG","Os01g0607100","exon","ARABINOGALACTAN PROTEIN 29","Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein && sp|F4JIG1|LTG25_ARATH Non-specific lipid transfer protein GPI-anchored 25 OS=Arabidopsis thaliana OX=3702 GN=LTPG25 PE=3 SV=1 && -"]
[1,23919432,23919684,253,92,0.065355499386142,0.229796611451889,-0.164441112065747,-759.670367047345,"CG","1:23918918:23924193","CGI"]
[1,23952891,23952949,59,7,0.669015088441225,0.849802264871309,-0.180787176430084,-29.0529094230518,"CHG","Os01g0607600","intron","OsWD40-18","WD40 repeat domain containing protein && sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 && PF08513:LisH"]
[1,23952891,23952949,59,7,0.669015088441225,0.849802264871309,-0.180787176430084,-29.0529094230518,"CHG","Os01g0607600","exon","OsWD40-18","WD40 repeat domain containing protein && sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 && PF08513:LisH"]
[1,23993073,23993264,192,59,0.188386917625126,0.00848633599407824,0.179900581631048,349.371095753922,"CHH","1:23991601:23993602","CGI_shore"]
[1,23993073,23993264,192,59,0.188386917625126,0.00848633599407824,0.179900581631048,349.371095753922,"CHH","1:23991734:23993734","CGI_shore"]
[1,24086522,24086643,122,23,0.0765596148614341,0.0280223928569788,0.0485372220044552,105.875886898607,"CHH","1:24086146:24088146","CGI_shore"]
[1,24162954,24163020,67,17,0.00562562467657671,0.0845777044648987,-0.0789520797883219,-99.8959722812878,"CHH","Os01g0610600","promoter","Os01g0610600","Endonuclease/exonuclease/phosphatase domain containing protein && sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CCR4-6 PE=2 SV=2 && PF03372:Endonuclease/Exonuclease/phosphatase family"]
[1,24162954,24163020,67,17,0.00562562467657671,0.0845777044648987,-0.0789520797883219,-99.8959722812878,"CHH","1:24162702:24164703","CGI_shore"]
[1,24184743,24184958,216,61,0.424641590503839,0.238134877182734,0.186506713321104,355.601234193909,"CHH","1:24177695:24193449","CGI"]
[1,24287437,24287618,182,43,0.104752102561777,0.0299140729041207,0.0748380296576558,204.65271378017,"CHH","1:24285908:24287909","CGI_shore"]
[1,24345827,24345942,116,40,0.386196737452098,0.266639696180964,0.119557041271134,170.057645898369,"CHH","Os01g0613500","promoter","Os01g0613500","Peptidase C1A, papain family protein && sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14861 PE=3 SV=1 && PF00112:Papain family cysteine protease|PF08246:Cathepsin propeptide inhibitor domain (I29)"]
[1,24450525,24450617,93,17,0.0544678522073453,0.180785101578036,-0.126317249370691,-99.1037875048053,"CHH","1:24450129:24452129","CGI_shore"]
[1,24450697,24450848,152,28,0.0911074662378093,0.252844988512789,-0.16173752227498,-138.437689740086,"CHH","1:24450129:24452129","CGI_shore"]
[1,24478680,24478879,200,27,0.108714170808625,0.689944932058635,-0.58123076125001,-227.27502317959,"CG","1:24477978:24479231","CGI"]
[1,24478680,24478879,200,27,0.108714170808625,0.689944932058635,-0.58123076125001,-227.27502317959,"CG","Os01g0616400","promoter","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8","Similar to Floral homeotic protein HUA1 && sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0616400 PE=2 SV=2 && PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[1,24478680,24478879,200,27,0.108714170808625,0.689944932058635,-0.58123076125001,-227.27502317959,"CG","1:24478869:24480869","CGI_shore"]
[1,24487489,24487707,219,44,0.68926096531974,0.0420499000811709,0.647211065238569,586.116133066471,"CG","1:24484417:24488266","CGI"]
[1,24487496,24487650,155,17,0.419104583700754,0.0240727005692304,0.395031883131523,96.6203385922477,"CHG","1:24484417:24488266","CGI"]
[1,24548224,24548289,66,25,0.0179828135784736,0.0457231541278821,-0.0277403405494085,-100.304619361875,"CHH","1:24546573:24548573","CGI_shore"]
[1,24548224,24548289,66,25,0.0179828135784736,0.0457231541278821,-0.0277403405494085,-100.304619361875,"CHH","Os01g0617500","promoter","Os01g0617500","Tetratricopeptide-like helical domain containing protein && sp|Q8VZM1|NAA15_ARATH N-terminal acetyltransferase A complex auxiliary subunit NAA15 OS=Arabidopsis thaliana OX=3702 GN=NAA15 PE=1 SV=1 && PF13414:TPR repeat|PF12569:NMDA receptor-regulated protein 1"]
[1,24548224,24548289,66,25,0.0179828135784736,0.0457231541278821,-0.0277403405494085,-100.304619361875,"CHH","1:24546821:24548822","CGI_shore"]
[1,24590886,24590940,55,23,0.151189513318402,0.0674234271054127,0.0837660862129895,103.878313428049,"CHH","1:24589312:24591312","CGI_shore"]
[1,24681185,24681326,142,38,0.0924907159147547,0.0229974411094574,0.0694932748052974,180.811959017843,"CHH","1:24679390:24681390","CGI_shore"]
[1,24681185,24681326,142,38,0.0924907159147547,0.0229974411094574,0.0694932748052974,180.811959017843,"CHH","1:24679662:24681663","CGI_shore"]
[1,24681185,24681326,142,38,0.0924907159147547,0.0229974411094574,0.0694932748052974,180.811959017843,"CHH","1:24680055:24682055","CGI_shore"]
[1,24687333,24687422,90,30,0.194945834556514,0.070596981742734,0.12434885281378,139.946886074575,"CHH","1:24685394:24687394","CGI_shore"]
[1,24687333,24687422,90,30,0.194945834556514,0.070596981742734,0.12434885281378,139.946886074575,"CHH","1:24687395:24687993","CGI"]
[1,24688902,24689000,99,18,0.0171938500741499,0.336754572727665,-0.319560722653515,-100.418831819186,"CHH","1:24687993:24689994","CGI_shore"]
[1,24688902,24689000,99,18,0.0171938500741499,0.336754572727665,-0.319560722653515,-100.418831819186,"CHH","1:24688250:24690250","CGI_shore"]
[1,24713892,24713998,107,13,0.344131634785676,0.0478074685089303,0.296324166276746,74.459349742856,"CHH","Os01g0620400","promoter","Os01g0620400","Hypothetical protein && - && -"]
[1,24713892,24713998,107,13,0.344131634785676,0.0478074685089303,0.296324166276746,74.459349742856,"CHH","1:24713693:24715694","CGI_shore"]
[1,24728030,24728084,55,18,0.146193290250925,0.0531918941490181,0.0930013961019069,88.9847195042708,"CHH","1:24727717:24728228","CGI"]
[1,24728030,24728084,55,18,0.146193290250925,0.0531918941490181,0.0930013961019069,88.9847195042708,"CHH","1:24727724:24729724","CGI_shore"]
[1,24732184,24732378,195,48,0.196023456834132,0.0638318025118879,0.132191654322244,317.014363503129,"CHH","1:24730278:24732279","CGI_shore"]
[1,24732184,24732378,195,48,0.196023456834132,0.0638318025118879,0.132191654322244,317.014363503129,"CHH","1:24731427:24733427","CGI_shore"]
[1,24754782,24755072,291,68,0.279997351164647,0.078724293050262,0.201273058114385,420.880978826493,"CHH","Os01g0621200","intron","gamma-aminobutyric acid transporter 2","Similar to proline transporter && sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana OX=3702 GN=At5g41800 PE=1 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[1,24754782,24755072,291,68,0.279997351164647,0.078724293050262,0.201273058114385,420.880978826493,"CHH","1:24754513:24756514","CGI_shore"]
[1,24772548,24772603,56,15,0.00567510335062249,0.10271283820107,-0.0970377348504478,-112.668843786803,"CHH","1:24770633:24774589","CGI"]
[1,24772548,24772603,56,15,0.00567510335062249,0.10271283820107,-0.0970377348504478,-112.668843786803,"CHH","Os01g0621500","promoter","Os01g0621500","Conserved hypothetical protein && - && -"]
[1,24772557,24772774,218,39,0.0254569543120438,0.150252383173185,-0.124795428861141,-182.445743822658,"CHG","1:24770633:24774589","CGI"]
[1,24772557,24772774,218,39,0.0254569543120438,0.150252383173185,-0.124795428861141,-182.445743822658,"CHG","Os01g0621500","promoter","Os01g0621500","Conserved hypothetical protein && - && -"]
[1,24772648,24772775,128,41,0.073216737845526,0.178821969710325,-0.105605231864799,-177.021872699358,"CG","1:24770633:24774589","CGI"]
[1,24772648,24772775,128,41,0.073216737845526,0.178821969710325,-0.105605231864799,-177.021872699358,"CG","Os01g0621500","promoter","Os01g0621500","Conserved hypothetical protein && - && -"]
[1,24777139,24777215,77,6,0.694879104820292,0.339376469092635,0.355502635727657,27.198090111378,"CHG","Target=RETROFIT_I-int:100-2318;Class=LTR/Copia","repeat"]
[1,24852735,24852880,146,53,0.164156319652002,0.0140642308582458,0.150092088793756,317.036862457714,"CHH","1:24851147:24853148","CGI_shore"]
[1,24852735,24852880,146,53,0.164156319652002,0.0140642308582458,0.150092088793756,317.036862457714,"CHH","Os01g0622800","promoter","Os01g0622800","Hypothetical protein && - && -"]
[1,24852735,24852880,146,53,0.164156319652002,0.0140642308582458,0.150092088793756,317.036862457714,"CHH","1:24852596:24854597","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","1:24892006:24894006","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","1:24892407:24894408","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","1:24892427:24894427","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","Os01g0623500","promoter","Os01g0623500","ATPase, AAA-type, core domain containing protein && sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus OX=9031 GN=SPAST PE=2 SV=2 && PF17862:AAA+ lid domain|PF00004:ATPase family associated with various cellular activities (AAA)"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","1:24898616:24900616","CGI_shore"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","Os01g0623750","promoter","Os01g0623750","Hypothetical protein && sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","Os01g0623550","promoter","Os01g0623550","Hypothetical protein && sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus OX=9031 GN=SPAST PE=2 SV=2 && -"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","Os01g0623600","intron","Os01g0623600","Glycoside hydrolase, family 28 protein && sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","1:24900617:24910420","CGI"]
[1,24912344,24912472,129,33,0.588495410685715,0.412275275042956,0.176220135642758,185.565603044837,"CHH","1:24910420:24912421","CGI_shore"]
[1,24952284,24952434,151,54,0.277816911246242,0.060551752884719,0.217265158361523,420.540006158353,"CHH","1:24951632:24954500","CGI"]
[1,24957807,24957905,99,30,0.268891980074679,0.112998736729213,0.155893243345466,147.608799846978,"CHH","1:24956393:24958394","CGI_shore"]
[1,24957807,24957905,99,30,0.268891980074679,0.112998736729213,0.155893243345466,147.608799846978,"CHH","1:24957030:24959074","CGI"]
[1,25033840,25033999,160,29,0.307956123916989,0.0468193042577177,0.261136819659271,188.031968306971,"CHH","Os01g0626900","promoter","Os01g0626900","Helix-loop-helix DNA-binding domain containing protein && sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144 OS=Arabidopsis thaliana OX=3702 GN=BHLH144 PE=1 SV=1 && -"]
[1,25052841,25053031,191,29,0.44317720245994,0.255257666909711,0.187919535550229,164.894984153391,"CHH","1:25052738:25054739","CGI_shore"]
[1,25093136,25093342,207,50,0.232801221857672,0.112790757297869,0.120010464559803,243.815479156293,"CHH","1:25091535:25122898","CGI"]
[1,25159007,25159090,84,11,0.0477444572243898,0.206582983355562,-0.158838526131173,-55.1412802858419,"CG","1:25157694:25159951","CGI"]
[1,25159007,25159090,84,11,0.0477444572243898,0.206582983355562,-0.158838526131173,-55.1412802858419,"CG","Os01g0629900","promoter","MAP kinase 20-1","Similar to Blast and wounding induced mitogen-activated protein kinase && sp|Q5ZCI1|MPK10_ORYSJ Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK10 PE=2 SV=2 && PF00069:Protein kinase domain"]
[1,25159729,25159830,102,28,0.852212129887087,0.660619312244423,0.191592817642663,130.309163951471,"CG","1:25157694:25159951","CGI"]
[1,25159729,25159830,102,28,0.852212129887087,0.660619312244423,0.191592817642663,130.309163951471,"CG","Os01g0629900","promoter","MAP kinase 20-1","Similar to Blast and wounding induced mitogen-activated protein kinase && sp|Q5ZCI1|MPK10_ORYSJ Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK10 PE=2 SV=2 && PF00069:Protein kinase domain"]
[1,25159943,25160032,90,23,0.277372695523585,0.100863565504481,0.176509130019105,119.207115802752,"CHH","1:25157694:25159951","CGI"]
[1,25159943,25160032,90,23,0.277372695523585,0.100863565504481,0.176509130019105,119.207115802752,"CHH","Os01g0629900","promoter","MAP kinase 20-1","Similar to Blast and wounding induced mitogen-activated protein kinase && sp|Q5ZCI1|MPK10_ORYSJ Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK10 PE=2 SV=2 && PF00069:Protein kinase domain"]
[1,25159943,25160032,90,23,0.277372695523585,0.100863565504481,0.176509130019105,119.207115802752,"CHH","1:25159951:25161952","CGI_shore"]
[1,25165554,25165686,133,42,0.141182988959276,0.0479581136348226,0.0932248753244538,201.068891445705,"CHH","1:25165007:25167008","CGI_shore"]
[1,25222563,25222616,54,21,0.0365551754326394,0.00827695265612782,0.0282782227765116,114.963442100113,"CHH","1:25221926:25223926","CGI_shore"]
[1,25262575,25262670,96,25,0.34086342858046,0.154685573627844,0.186177854952616,119.912902554118,"CHH","Os01g0631400","intron","Os01g0631400","Six-hairpin glycosidase domain containing protein && sp|Q9SHJ5|GPAT1_ARATH Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GPAT1 PE=1 SV=1 && PF12710:haloacid dehalogenase-like hydrolase"]
[1,25262575,25262670,96,25,0.34086342858046,0.154685573627844,0.186177854952616,119.912902554118,"CHH","1:25260932:25262932","CGI_shore"]
[1,25454437,25454541,105,35,0.151259704598997,0.0730659422127513,0.0781937623862461,176.324879700849,"CHH","1:25454213:25456214","CGI_shore"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","1:25481645:25483646","CGI_shore"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","Os01g0635800","exon","Os01g0635800","Hypothetical gene && - && -"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","Os01g0635600","promoter","zinc finger homeodomain class homeobox transcription factor 5","Trimeric LpxA-like domain containing protein && - && -"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","Os01g0635800","utr3","Os01g0635800","Hypothetical gene && - && -"]
[1,25523894,25524082,189,66,0.194831590119453,0.0841262220198416,0.110705368099611,401.753079623455,"CHH","Os01g0636600","promoter","Os01g0636600","Hypothetical conserved gene && sp|Q5VNN5|DEF1B_ORYSJ Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1B PE=2 SV=1 && PF01327:Polypeptide deformylase"]
[1,25523894,25524082,189,66,0.194831590119453,0.0841262220198416,0.110705368099611,401.753079623455,"CHH","1:25523311:25525312","CGI_shore"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","Os01g0636700","promoter","CSB","DEAD-like helicase, N-terminal domain containing protein && sp|A0A0P0WGX7|ENL1_ORYSJ SNF2 domain-containing protein ENL1 OS=Oryza sativa subsp. japonica OX=39947 GN=ENL1 PE=2 SV=1 && -"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","1:25532222:25534222","CGI_shore"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","1:25532432:25534433","CGI_shore"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","1:25532748:25534749","CGI_shore"]
[1,25535363,25535420,58,17,0.214592603993189,0.112970514094908,0.101622089898281,80.5152530392341,"CHH","1:25534223:25535843","CGI"]
[1,25536251,25536311,61,21,0.12061532038783,0.0513697815892701,0.06924553879856,98.5519029110847,"CHH","1:25535843:25537844","CGI_shore"]
[1,25539321,25539459,139,59,0.224611412967604,0.129110124274177,0.0955012886934269,276.677457025256,"CHH","1:25538545:25540545","CGI_shore"]
[1,25539321,25539459,139,59,0.224611412967604,0.129110124274177,0.0955012886934269,276.677457025256,"CHH","1:25539079:25541080","CGI_shore"]
[1,25543658,25543902,245,102,0.351268524716547,0.233661854227205,0.117606670489343,499.926673871701,"CHH","Os01g0637100","promoter","F-box protein 29","Similar to predicted protein && sp|Q9SF47|PAH1_ARATH Phosphatidate phosphatase PAH1 OS=Arabidopsis thaliana OX=3702 GN=PAH1 PE=1 SV=1 && -"]
[1,25550000,25550369,370,110,0.393227992694882,0.262449825239352,0.13077816745553,518.795342811752,"CHH","1:25549948:25551949","CGI_shore"]
[1,25562862,25562972,111,34,0.329937635870351,0.203725373511742,0.126212262358608,152.768816327414,"CHH","1:25562014:25563953","CGI"]
[1,25562862,25562972,111,34,0.329937635870351,0.203725373511742,0.126212262358608,152.768816327414,"CHH","Os01g0637300","intron","Os01g0637300","Conserved hypothetical protein && sp|O60121|YH77_SCHPO Uncharacterized protein C16G5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC16G5.07c PE=3 SV=1 && -"]
[1,25579222,25579393,172,59,0.212882328347638,0.11778470900458,0.0950976193430586,287.697203244424,"CHH","1:25572135:25581561","CGI"]
[1,25579730,25579879,150,32,0.305003309724171,0.16819159791066,0.136811711813511,168.196547417473,"CG","1:25572135:25581561","CGI"]
[1,25580038,25580146,109,23,0.104270387548575,0.217464466668572,-0.113194079119997,-104.002501249862,"CG","Os01g0637500","promoter","Os01g0637500","Similar to polygalacturonase && sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,25580038,25580146,109,23,0.104270387548575,0.217464466668572,-0.113194079119997,-104.002501249862,"CG","1:25572135:25581561","CGI"]
[1,25580442,25580600,159,50,0.11840858997109,0.174318616912437,-0.0559100269413472,-226.48526143431,"CG","Os01g0637500","promoter","Os01g0637500","Similar to polygalacturonase && sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,25580442,25580600,159,50,0.11840858997109,0.174318616912437,-0.0559100269413472,-226.48526143431,"CG","1:25572135:25581561","CGI"]
[1,25595255,25595453,199,43,0.170497261258299,0.0199002893460551,0.150596971912244,310.597138534643,"CHH","1:25593574:25595575","CGI_shore"]
[1,25597352,25597540,189,65,0.114137915375504,0.0336979741786269,0.0804399411968775,328.140449789928,"CHH","Os01g0638000","promoter","Os01g0638000","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9AT54|SCGT_TOBAC Scopoletin glucosyltransferase OS=Nicotiana tabacum OX=4097 GN=TOGT1 PE=1 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[1,25597352,25597540,189,65,0.114137915375504,0.0336979741786269,0.0804399411968775,328.140449789928,"CHH","1:25596598:25598598","CGI_shore"]
[1,25642317,25642578,262,51,0.373057363070763,0.186875564857201,0.186181798213562,292.134034692391,"CHH","1:25641507:25643508","CGI_shore"]
[1,25642317,25642578,262,51,0.373057363070763,0.186875564857201,0.186181798213562,292.134034692391,"CHH","Os01g0639200","intron","suppressor of BTH-induced, NH1-mediated lesion mimic 6","Cinnamoyl-CoA reductase-like gene family member, Defense respons && sp|Q0JKZ0|SNL6_ORYSJ Cinnamoyl-CoA reductase-like SNL6 OS=Oryza sativa subsp. japonica OX=39947 GN=SNL6 PE=3 SV=1 && PF01073:3-beta hydroxysteroid dehydrogenase/isomerase family"]
[1,25647666,25647769,104,19,0.037676337093564397,0.185599544578647,-0.147923207485083,-144.0074849221,"CHH","1:25647001:25648645","CGI"]
[1,25647666,25647769,104,19,0.037676337093564397,0.185599544578647,-0.147923207485083,-144.0074849221,"CHH","Os01g0639200","promoter","suppressor of BTH-induced, NH1-mediated lesion mimic 6","Cinnamoyl-CoA reductase-like gene family member, Defense respons && sp|Q0JKZ0|SNL6_ORYSJ Cinnamoyl-CoA reductase-like SNL6 OS=Oryza sativa subsp. japonica OX=39947 GN=SNL6 PE=3 SV=1 && PF01073:3-beta hydroxysteroid dehydrogenase/isomerase family"]
[1,25651744,25651908,165,41,0.325022836981368,0.124712760952116,0.200310076029252,258.814252112479,"CHH","1:25650753:25652754","CGI_shore"]
[1,25651744,25651908,165,41,0.325022836981368,0.124712760952116,0.200310076029252,258.814252112479,"CHH","1:25651869:25653869","CGI_shore"]
[1,25665084,25665297,214,84,0.492462097642132,0.819791838655468,-0.327329741013337,-508.323827256561,"CG","1:25663507:25665508","CGI_shore"]
[1,25665084,25665297,214,84,0.492462097642132,0.819791838655468,-0.327329741013337,-508.323827256561,"CG","1:25664914:25666768","CGI"]
[1,25711584,25711722,139,34,0.647965680771303,0.400950406967422,0.24701527380388,211.683313690721,"CG","Os01g0640000","intron","Os01g0640000","Similar to Carbonic anhydrase && sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1 && PF00484:Carbonic anhydrase"]
[1,25711584,25711722,139,34,0.647965680771303,0.400950406967422,0.24701527380388,211.683313690721,"CG","Os01g0640100","utr5","Os01g0640100","Conserved hypothetical protein && sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 && PF17917:RNase H-like domain found in reverse transcriptase"]
[1,25711584,25711722,139,34,0.647965680771303,0.400950406967422,0.24701527380388,211.683313690721,"CG","Os01g0640100","exon","Os01g0640100","Conserved hypothetical protein && sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 && PF17917:RNase H-like domain found in reverse transcriptase"]
[1,25713327,25713381,55,10,0.490426141536035,0.346499484273044,0.143926657262991,49.5436809682226,"CG","Os01g0640000","intron","Os01g0640000","Similar to Carbonic anhydrase && sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1 && PF00484:Carbonic anhydrase"]
[1,25751731,25751809,79,20,0.222374455447896,0.0755488085639548,0.146825646883942,109.844212320515,"CHH","Os01g0640700","promoter","Os01g0640700","Similar to vegetative cell wall protein gp1 && sp|C5XEK4|CSPL7_SORBI CASP-like protein 4U1 OS=Sorghum bicolor OX=4558 GN=Sb03g029220 PE=2 SV=1 && PF04535:Domain of unknown function (DUF588)"]
[1,25772295,25772412,118,29,0.1464034888794,0.037740306556164,0.108663182323236,138.693229115928,"CHH","1:25772058:25774059","CGI_shore"]
[1,25772295,25772412,118,29,0.1464034888794,0.037740306556164,0.108663182323236,138.693229115928,"CHH","1:25770991:25772991","CGI_shore"]
[1,25778985,25779169,185,56,0.146224668990823,0.054588031321745,0.0916366376690783,310.570781162719,"CHH","1:25777275:25779276","CGI_shore"]
[1,25778985,25779169,185,56,0.146224668990823,0.054588031321745,0.0916366376690783,310.570781162719,"CHH","Os01g0641700","intron","Os01g0641700","Uncharacterised protein family UPF0121 domain containing protein && - && PF03661:Uncharacterised protein family (UPF0121)"]
[1,25816661,25816765,105,53,0.0570831578900176,0.180120456767466,-0.123037298877448,-265.488833898673,"CHH","1:25815107:25817351","CGI"]
[1,25816958,25817092,135,55,0.222619964563804,0.101524052453184,0.121095912110619,277.05887418286,"CHH","1:25815107:25817351","CGI"]
[1,25846397,25846495,99,24,0.141700527097044,0.0289714552882813,0.112729071808763,179.300066529609,"CG","1:25840617:25846568","CGI"]
[1,25846410,25846471,62,11,0.0920834853509765,0.0113008338166937,0.0807826515342828,72.548196941208,"CHG","1:25840617:25846568","CGI"]
[1,25853336,25853397,62,15,0.889188069243597,0.767997303174483,0.121190766069114,55.2309317543013,"CG","1:25851493:25853494","CGI_shore"]
[1,25879252,25879493,242,56,0.39586371841239,0.152293611578619,0.243570106833771,332.512655743355,"CHH","1:25877625:25879625","CGI_shore"]
[1,25879252,25879493,242,56,0.39586371841239,0.152293611578619,0.243570106833771,332.512655743355,"CHH","1:25878114:25880115","CGI_shore"]
[1,25879252,25879493,242,56,0.39586371841239,0.152293611578619,0.243570106833771,332.512655743355,"CHH","1:25878198:25880198","CGI_shore"]
[1,25925237,25925351,115,36,0.297896215966894,0.138735106971494,0.1591611089954,156.823722751558,"CHH","Os01g0644000","promoter","Os01g0644000","Twin-arginine translocation pathway signal domain containing protein && - && -"]
[1,25925237,25925351,115,36,0.297896215966894,0.138735106971494,0.1591611089954,156.823722751558,"CHH","1:25922169:25961636","CGI"]
[1,25925812,25925915,104,31,0.305664588976953,0.0877171606998507,0.217947428277102,134.018681354409,"CHH","Os01g0644000","promoter","Os01g0644000","Twin-arginine translocation pathway signal domain containing protein && - && -"]
[1,25925812,25925915,104,31,0.305664588976953,0.0877171606998507,0.217947428277102,134.018681354409,"CHH","1:25922169:25961636","CGI"]
[1,26083683,26083753,71,26,0.104040767473482,0.0582681328403994,0.0457726346330829,111.379991154638,"CHH","Os01g0647100","promoter","PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 1","ADP/ATP carrier protein family protein && sp|Q39002|TLC1_ARATH ADP,ATP carrier protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=AATP1 PE=1 SV=2 && PF03219:TLC ATP/ADP transporter"]
[1,26083683,26083753,71,26,0.104040767473482,0.0582681328403994,0.0457726346330829,111.379991154638,"CHH","1:26082383:26084384","CGI_shore"]
[1,26086270,26086327,58,22,0.066783031792184,0.00473672357146602,0.0620463082207179,91.4352777214189,"CHH","1:26086013:26088013","CGI_shore"]
[1,26086270,26086327,58,22,0.066783031792184,0.00473672357146602,0.0620463082207179,91.4352777214189,"CHH","Os01g0647200","utr3","Os01g0647200","Hypothetical conserved gene && - && -"]
[1,26086270,26086327,58,22,0.066783031792184,0.00473672357146602,0.0620463082207179,91.4352777214189,"CHH","Os01g0647200","exon","Os01g0647200","Hypothetical conserved gene && - && -"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","1:26117700:26119701","CGI_shore"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","Os01g0648225","promoter","Os01g0648225","Hypothetical protein && sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica OX=39947 GN=AKT1 PE=2 SV=1 && -"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","1:26118562:26120945","CGI"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","Os01g0647850","exon","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","1:26117700:26119701","CGI_shore"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0648225","promoter","Os01g0648225","Hypothetical protein && sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica OX=39947 GN=AKT1 PE=2 SV=1 && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","1:26118562:26120945","CGI"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","exon","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","utr5","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","TSS","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","promoter","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26161099,26161153,55,6,0.409552559651302,0.0915704057870847,0.317982153864217,26.6445055677697,"CHG","1:26159161:26164236","CGI"]
[1,26174529,26174652,124,37,0.327130862383559,0.188464813537622,0.138666048845936,202.309734066605,"CHH","Os01g0648700","intron","Os01g0648700","Bromodomain containing protein && sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana OX=3702 GN=GTE9 PE=1 SV=1 && PF00439:Bromodomain"]
[1,26174529,26174652,124,37,0.327130862383559,0.188464813537622,0.138666048845936,202.309734066605,"CHH","1:26174493:26176493","CGI_shore"]
[1,26229983,26230053,71,17,0.292521279279369,0.132575648349933,0.159945630929436,87.6295133571836,"CHH","Os01g0650000","promoter","Os01g0650000","Similar to esterase && sp|Q9ZQI3|GDL40_ARATH GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana OX=3702 GN=At2g27360 PE=2 SV=1 && -"]
[1,26229983,26230053,71,17,0.292521279279369,0.132575648349933,0.159945630929436,87.6295133571836,"CHH","1:26226097:26231415","CGI"]
[1,26229983,26230053,71,17,0.292521279279369,0.132575648349933,0.159945630929436,87.6295133571836,"CHH","Os01g0649950","intron","Os01g0649950","Similar to H0814G11.9 protein && sp|Q9ZQI3|GDL40_ARATH GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana OX=3702 GN=At2g27360 PE=2 SV=1 && -"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26236396:26238396","CGI_shore"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26236615:26238616","CGI_shore"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26238368:26240368","CGI_shore"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26238397:26239048","CGI"]
[1,26246084,26246143,60,20,0.202577324829477,0.0507433113814275,0.151834013448049,88.6434129801049,"CHH","1:26244895:26246896","CGI_shore"]
[1,26246084,26246143,60,20,0.202577324829477,0.0507433113814275,0.151834013448049,88.6434129801049,"CHH","1:26245928:26247928","CGI_shore"]
[1,26292491,26292639,149,44,0.341239227550309,0.222142534322831,0.119096693227478,200.157839705881,"CHH","1:26290498:26292499","CGI_shore"]
[1,26292491,26292639,149,44,0.341239227550309,0.222142534322831,0.119096693227478,200.157839705881,"CHH","1:26290980:26293910","CGI"]
[1,26292491,26292639,149,44,0.341239227550309,0.222142534322831,0.119096693227478,200.157839705881,"CHH","Os01g0651100","promoter","Os01g0651100","Pentatricopeptide repeat domain containing protein && sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=3 SV=1 && -"]
[1,26309688,26309926,239,49,0.375862139132752,0.200097171490559,0.175764967642192,243.687023084862,"CHH","Os01g0651350","promoter","Os01g0651350","Hypothetical protein && sp|Q94F40|GDL9_ARATH GDSL esterase/lipase At1g28600 OS=Arabidopsis thaliana OX=3702 GN=At1g28600 PE=2 SV=1 && -"]
[1,26309688,26309926,239,49,0.375862139132752,0.200097171490559,0.175764967642192,243.687023084862,"CHH","Os01g0651400","intron","Os01g0651400","Lipase, GDSL domain containing protein && - && -"]
[1,26309688,26309926,239,49,0.375862139132752,0.200097171490559,0.175764967642192,243.687023084862,"CHH","1:26308454:26313128","CGI"]
[1,26361868,26361928,61,16,0.110257722908488,0.0350936070295204,0.0751641158789679,79.4500678815604,"CHH","1:26360378:26362379","CGI_shore"]
[1,26361868,26361928,61,16,0.110257722908488,0.0350936070295204,0.0751641158789679,79.4500678815604,"CHH","1:26360803:26362804","CGI_shore"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","1:26386938:26388939","CGI_shore"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","Os01g0652300","promoter","Os01g0652300","Similar to Phospholipase A1-II 7 && sp|B9EYD3|PLA4_ORYSJ Phospholipase A1-II 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0652300 PE=2 SV=2 && -"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","1:26387105:26389105","CGI_shore"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","1:26387707:26389707","CGI_shore"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","1:26387707:26389707","CGI_shore"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","1:26389106:26389449","CGI"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","1:26389449:26391450","CGI_shore"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","Target=(CGG)n:1-224;Class=Simple_repeat","repeat"]
[1,26414388,26414589,202,45,0.409476263743617,0.196418130055261,0.213058133688356,279.880199299903,"CHH","1:26412910:26424441","CGI"]
[1,26558720,26558773,54,19,0.157277615801938,0.0612767364594158,0.096000879342522,101.349959255512,"CHH","1:26556645:26565673","CGI"]
[1,26559029,26559155,127,50,0.163992243616126,0.0446648503986738,0.119327393217452,343.042665564464,"CHH","1:26556645:26565673","CGI"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","1:26571824:26573825","CGI_shore"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","1:26572156:26574156","CGI_shore"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","Os01g0654900","intron","Os01g0654900","Hypothetical conserved gene && - && -"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","1:26572833:26574833","CGI_shore"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","1:26571824:26573825","CGI_shore"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","1:26572156:26574156","CGI_shore"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","Os01g0654900","intron","Os01g0654900","Hypothetical conserved gene && - && -"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","1:26572833:26574833","CGI_shore"]
[1,26763473,26763563,91,18,0.544410165271779,0.815115821670869,-0.27070565639909,-92.0072376728556,"CG","1:26762004:26763874","CGI"]
[1,26799031,26799101,71,23,0.335899355439261,0.169211398411099,0.166687957028162,113.884751995751,"CHH","1:26797306:26799307","CGI_shore"]
[1,26799031,26799101,71,23,0.335899355439261,0.169211398411099,0.166687957028162,113.884751995751,"CHH","1:26797793:26799793","CGI_shore"]
[1,26799031,26799101,71,23,0.335899355439261,0.169211398411099,0.166687957028162,113.884751995751,"CHH","1:26798324:26800324","CGI_shore"]
[1,26967499,26967664,166,50,0.187009186294411,0.0975127620852273,0.0894964242091836,242.822710554119,"CHH","1:26952135:27003168","CGI"]
[1,27083458,27083711,254,40,0.301979489189238,0.101697908268428,0.20028158092081,189.318552376121,"CHH","Os01g0663300","intron","Os01g0663300","Similar to (1-4)-beta-mannan endohydrolase-like protein && sp|Q0JKM9|MAN1_ORYSJ Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MAN1 PE=2 SV=2 && PF00150:Cellulase (glycosyl hydrolase family 5)"]
[1,27083458,27083711,254,40,0.301979489189238,0.101697908268428,0.20028158092081,189.318552376121,"CHH","1:27082257:27084258","CGI_shore"]
[1,27083458,27083711,254,40,0.301979489189238,0.101697908268428,0.20028158092081,189.318552376121,"CHH","1:27082393:27084393","CGI_shore"]
[1,27163713,27163779,67,18,0.0125819157171968,0.118878281631047,-0.10629636591385,-81.8373878745843,"CHH","1:27163051:27163879","CGI"]
[1,27163713,27163779,67,18,0.0125819157171968,0.118878281631047,-0.10629636591385,-81.8373878745843,"CHH","1:27163472:27165472","CGI_shore"]
[1,27186930,27187094,165,63,0.251684652365952,0.127251879778333,0.124432772587619,401.037821219706,"CHH","1:27186311:27188312","CGI_shore"]
[1,27186930,27187094,165,63,0.251684652365952,0.127251879778333,0.124432772587619,401.037821219706,"CHH","Os01g0665400","intron","Os01g0665400","Ribokinase family protein && sp|A1A6H3|RBSK_ARATH Ribokinase OS=Arabidopsis thaliana OX=3702 GN=RBSK PE=1 SV=1 && PF00294:pfkB family carbohydrate kinase"]
[1,27218083,27218191,109,24,0.2781364217143,0.0893297810258415,0.188806640688458,166.153408327303,"CHH","1:27217066:27219067","CGI_shore"]
[1,27218083,27218191,109,24,0.2781364217143,0.0893297810258415,0.188806640688458,166.153408327303,"CHH","1:27217291:27219291","CGI_shore"]
[1,27218083,27218191,109,24,0.2781364217143,0.0893297810258415,0.188806640688458,166.153408327303,"CHH","1:27218094:27220094","CGI_shore"]
[1,27225175,27225620,446,116,0.208261264275213,0.0824273647598665,0.125833899515347,607.166081530347,"CHH","1:27225077:27227078","CGI_shore"]
[1,27243129,27243302,174,58,0.33221135825916,0.207489693011456,0.124721665247704,298.905809632586,"CHH","Os01g0666400","promoter","Os01g0666400","Similar to predicted protein && - && -"]
[1,27243129,27243302,174,58,0.33221135825916,0.207489693011456,0.124721665247704,298.905809632586,"CHH","1:27241368:27243369","CGI_shore"]
[1,27243129,27243302,174,58,0.33221135825916,0.207489693011456,0.124721665247704,298.905809632586,"CHH","1:27242650:27244651","CGI_shore"]
[1,27260933,27261010,78,15,0.170230357353809,0.0328555677541675,0.137374789599641,96.1202289753748,"CHH","Os01g0666800","intron","Os01g0666800","Similar to predicted protein && sp|Q93VQ0|VCL1_ARATH Protein VACUOLELESS1 OS=Arabidopsis thaliana OX=3702 GN=VCL1 PE=1 SV=1 && PF04841:Vps16, N-terminal region|PF04840:Vps16, C-terminal region"]
[1,27279936,27280126,191,56,0.244519823683007,0.0460626386565695,0.198457185026437,394.250588289635,"CHH","Os01g0667200","promoter","GLYOXALASE II-1","Mitochondrial sulfur dioxygenase, Abiotic stress respons && sp|Q9C8L4|ETHE1_ARATH Persulfide dioxygenase ETHE1 homolog, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GLY3 PE=1 SV=3 && -"]
[1,27279936,27280126,191,56,0.244519823683007,0.0460626386565695,0.198457185026437,394.250588289635,"CHH","1:27278570:27280571","CGI_shore"]
[1,27279936,27280126,191,56,0.244519823683007,0.0460626386565695,0.198457185026437,394.250588289635,"CHH","1:27279261:27281261","CGI_shore"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","1:27297678:27299678","CGI_shore"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","1:27298825:27300825","CGI_shore"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","Os01g0667600","promoter","small GTP-binding protein OsRab11C1","Similar to GTP-binding protein && sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana OX=3702 GN=RABA1F PE=2 SV=1 && PF00071:Ras family"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","1:27299679:27300366","CGI"]
[1,27300163,27300229,67,31,0.277619653903758,0.109881909508004,0.167737744395754,189.093797253018,"CHH","1:27298825:27300825","CGI_shore"]
[1,27300163,27300229,67,31,0.277619653903758,0.109881909508004,0.167737744395754,189.093797253018,"CHH","Os01g0667600","promoter","small GTP-binding protein OsRab11C1","Similar to GTP-binding protein && sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana OX=3702 GN=RABA1F PE=2 SV=1 && PF00071:Ras family"]
[1,27300163,27300229,67,31,0.277619653903758,0.109881909508004,0.167737744395754,189.093797253018,"CHH","1:27299679:27300366","CGI"]
[1,27315984,27316099,116,35,0.100639173216759,0.02649439941295,0.0741447738038089,172.671092015595,"CHH","1:27314814:27316814","CGI_shore"]
[1,27321289,27321453,165,50,0.249342638239979,0.121899054806309,0.12744358343367,261.458128685839,"CHH","Os01g0667800","promoter","Os01g0667800","Similar to U2 snRNP auxiliary factor, small subunit && sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[1,27321289,27321453,165,50,0.249342638239979,0.121899054806309,0.12744358343367,261.458128685839,"CHH","1:27321060:27323061","CGI_shore"]
[1,27378639,27378689,51,18,0.19402158764124,0.107848742152741,0.0861728454884989,81.6199556943143,"CHH","Os01g0668600","promoter","Os01g0668600","Curculin-like (mannose-binding) lectin domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF01453:D-mannose binding lectin|PF00069:Protein kinase domain|PF00954:S-locus glycoprotein domain"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668901","promoter","Os01g0668901","Protein kinase, catalytic domain domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668700","TES","Os01g0668700","Hypothetical protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF00954:S-locus glycoprotein domain|PF01453:D-mannose binding lectin"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668700","exon","Os01g0668700","Hypothetical protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF00954:S-locus glycoprotein domain|PF01453:D-mannose binding lectin"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668700","utr3","Os01g0668700","Hypothetical protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF00954:S-locus glycoprotein domain|PF01453:D-mannose binding lectin"]
[1,27393468,27393595,128,35,0.146903743793485,0.0523246417277063,0.0945791020657785,177.559312370151,"CHH","1:27392941:27476746","CGI"]
[1,27407843,27407949,107,19,0.165882615151377,0.528849313417656,-0.362966698266278,-94.8438667487816,"CHG","1:27392941:27476746","CGI"]
[1,27464312,27464483,172,50,0.120578225123761,0.0290056738985191,0.0915725512252417,277.937033495736,"CHH","1:27392941:27476746","CGI"]
[1,27477738,27477899,162,36,0.459836798605209,0.294464548180542,0.165372250424667,179.47878481812,"CHH","1:27476746:27478747","CGI_shore"]
[1,27477738,27477899,162,36,0.459836798605209,0.294464548180542,0.165372250424667,179.47878481812,"CHH","Os01g0670100","promoter","Os01g0670100","Serine/threonine protein kinase-related domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF08276:PAN-like domain|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[1,27478257,27478344,88,40,0.325024245828529,0.221354532790156,0.103669713038372,187.624966949792,"CHH","1:27476746:27478747","CGI_shore"]
[1,27478257,27478344,88,40,0.325024245828529,0.221354532790156,0.103669713038372,187.624966949792,"CHH","Os01g0670100","promoter","Os01g0670100","Serine/threonine protein kinase-related domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF08276:PAN-like domain|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[1,27490361,27490580,220,52,0.433631822998069,0.286496597385369,0.1471352256127,234.561328270607,"CHH","1:27489309:27491309","CGI_shore"]
[1,27563271,27563383,113,35,0.309157918011871,0.166593050055786,0.142564867956086,159.369711638251,"CHH","1:27563039:27565040","CGI_shore"]
[1,27580071,27580262,192,52,0.169453995340533,0.077247919290311,0.0922060760502223,232.667244579826,"CHH","1:27579166:27581166","CGI_shore"]
[1,27580071,27580262,192,52,0.169453995340533,0.077247919290311,0.0922060760502223,232.667244579826,"CHH","Os01g0672201","promoter","Os01g0672201","Homeobox domain containing protein && sp|Q9FFH1|RLT2_ARATH Homeobox-DDT domain protein RLT2 OS=Arabidopsis thaliana OX=3702 GN=RLT2 PE=1 SV=1 && PF00046:Homeodomain"]
[1,27703778,27703938,161,50,0.168085911522011,0.0819421479929663,0.0861437635290449,238.532035794908,"CHH","Os01g0674150","promoter","Os01g0674150","Conserved hypothetical protein && - && -"]
[1,27703778,27703938,161,50,0.168085911522011,0.0819421479929663,0.0861437635290449,238.532035794908,"CHH","Os01g0674100","promoter","Os01g0674100","Similar to ATP binding protein && sp|Q9C9U5|SIS8_ARATH Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF14381:Ethylene-responsive protein kinase Le-CTR1"]
[1,27703778,27703938,161,50,0.168085911522011,0.0819421479929663,0.0861437635290449,238.532035794908,"CHH","1:27701361:27708968","CGI"]
[1,27705169,27705409,241,61,0.275115803251551,0.117738208157144,0.157377595094407,343.134224829553,"CHH","1:27701361:27708968","CGI"]
[1,27722901,27723291,391,89,0.297029176740028,0.151054953722611,0.145974223017417,461.036454869237,"CHH","1:27723242:27725242","CGI_shore"]
[1,27722901,27723291,391,89,0.297029176740028,0.151054953722611,0.145974223017417,461.036454869237,"CHH","Os01g0674500","promoter","tubby-like protein 9, tubby-like protein 1, F-box protein 34","Similar to cDNA clone:J023048A08, full insert sequence && sp|Q5QM27|TLP1_ORYSJ Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP1 PE=2 SV=1 && PF01167:Tub family"]
[1,27722901,27723291,391,89,0.297029176740028,0.151054953722611,0.145974223017417,461.036454869237,"CHH","1:27721218:27723219","CGI_shore"]
[1,27753464,27753658,195,58,0.384162319321902,0.177499146006445,0.206663173315457,259.492963960032,"CHH","1:27752669:27754669","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27772942:27774943","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27773699:27774719","CGI"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27774114:27776114","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27774681:27776681","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27774719:27776720","CGI_shore"]
[1,27800528,27800641,114,38,0.087619486613888,0.0206067066700333,0.0670127799438547,184.770099640098,"CHH","1:27799404:27801404","CGI_shore"]
[1,27800528,27800641,114,38,0.087619486613888,0.0206067066700333,0.0670127799438547,184.770099640098,"CHH","Os01g0676200","promoter","Os01g0676200","Conserved hypothetical protein && - && -"]
[1,27800528,27800641,114,38,0.087619486613888,0.0206067066700333,0.0670127799438547,184.770099640098,"CHH","1:27799855:27800735","CGI"]
[1,27855074,27855232,159,48,0.314019592605297,0.167157341331167,0.14686225127413,260.110112800385,"CHH","1:27853445:27855445","CGI_shore"]
[1,27893140,27893206,67,31,0.105172955368876,0.051384055348934,0.0537889000199417,147.709282512603,"CHH","1:27882777:27900026","CGI"]
[1,27980413,27980612,200,62,0.277081987416504,0.11790484030112,0.159177147115384,366.610899538434,"CHH","1:27979680:27981681","CGI_shore"]
[1,28133820,28133944,125,29,0.179219592611439,0.0164386140722533,0.162780978539186,143.639359442594,"CHH","Os01g0682700","promoter","Os01g0682700","Conserved hypothetical protein && - && -"]
[1,28133820,28133944,125,29,0.179219592611439,0.0164386140722533,0.162780978539186,143.639359442594,"CHH","1:28133142:28134789","CGI"]
[1,28311085,28311308,224,73,0.288676590444388,0.149280234209075,0.139396356235313,355.688673775466,"CHH","1:28309190:28311191","CGI_shore"]
[1,28311085,28311308,224,73,0.288676590444388,0.149280234209075,0.139396356235313,355.688673775466,"CHH","1:28309842:28311842","CGI_shore"]
[1,28311085,28311308,224,73,0.288676590444388,0.149280234209075,0.139396356235313,355.688673775466,"CHH","1:28310638:28312639","CGI_shore"]
[1,28395273,28395382,110,18,0.247879846071808,0.103651214911967,0.14422863115984,84.8574301223723,"CHH","1:28394397:28396398","CGI_shore"]
[1,28409783,28410079,297,61,0.207263314483095,0.091374851518621,0.115888462964474,287.758705774219,"CHH","1:28408587:28410587","CGI_shore"]
[1,28409783,28410079,297,61,0.207263314483095,0.091374851518621,0.115888462964474,287.758705774219,"CHH","1:28409208:28411209","CGI_shore"]
[1,28411594,28411703,110,15,0.328856605140097,0.123294491436382,0.205562113703715,73.8400356039982,"CHG","1:28410149:28412149","CGI_shore"]
[1,28411594,28411703,110,15,0.328856605140097,0.123294491436382,0.205562113703715,73.8400356039982,"CHG","1:28411311:28413311","CGI_shore"]
[1,28411594,28411703,110,15,0.328856605140097,0.123294491436382,0.205562113703715,73.8400356039982,"CHG","1:28411539:28413540","CGI_shore"]
[1,28412303,28412502,200,74,0.131138862196881,0.0545031685778459,0.0766356936190351,353.165611455752,"CHH","1:28411311:28413311","CGI_shore"]
[1,28412303,28412502,200,74,0.131138862196881,0.0545031685778459,0.0766356936190351,353.165611455752,"CHH","1:28411539:28413540","CGI_shore"]
[1,28412303,28412502,200,74,0.131138862196881,0.0545031685778459,0.0766356936190351,353.165611455752,"CHH","1:28412150:28412602","CGI"]
[1,28474815,28474880,66,16,0.093954017121149,0.0169001201050298,0.0770538970161192,93.0061544994087,"CHH","1:28473425:28475426","CGI_shore"]
[1,28474815,28474880,66,16,0.093954017121149,0.0169001201050298,0.0770538970161192,93.0061544994087,"CHH","1:28474413:28476413","CGI_shore"]
[1,28477988,28478145,158,44,0.236804344049806,0.0320940023580642,0.204710341691741,365.632517611416,"CHH","Os01g0689800","promoter","Prolyl Oligopeptidase 3, PROLYL OLIGOPEPTIDASE 3","Alpha/beta hydrolase fold-1 domain containing protein && sp|Q6GL10|AB17C_XENTR Alpha/beta hydrolase domain-containing protein 17C OS=Xenopus tropicalis OX=8364 GN=abhd17c PE=2 SV=1 && PF12146:Serine aminopeptidase, S33"]
[1,28477988,28478145,158,44,0.236804344049806,0.0320940023580642,0.204710341691741,365.632517611416,"CHH","1:28477380:28479380","CGI_shore"]
[1,28477988,28478145,158,44,0.236804344049806,0.0320940023580642,0.204710341691741,365.632517611416,"CHH","1:28477552:28479553","CGI_shore"]
[1,28517739,28517794,56,6,0.253101879598402,0.708363336265125,-0.455261456666723,-29.1616844684412,"CG","1:28515947:28517947","CGI_shore"]
[1,28622909,28622988,80,8,0.657943691229683,0.198232699614402,0.459710991615281,43.6986699623176,"CG","1:28620945:28622946","CGI_shore"]
[1,28622909,28622988,80,8,0.657943691229683,0.198232699614402,0.459710991615281,43.6986699623176,"CG","Os01g0693400","promoter","APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 127","Pathogenesis-related transcriptional factor and ERF, DNA-binding domain containing protein && sp|Q8RZX9|Y1934_ORYSJ AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693400 PE=2 SV=1 && PF02362:B3 DNA binding domain|PF00847:AP2 domain"]
[1,28622909,28622988,80,8,0.657943691229683,0.198232699614402,0.459710991615281,43.6986699623176,"CG","1:28621342:28623342","CGI_shore"]
[1,28630813,28630993,181,68,0.124976436150291,0.0368707874430499,0.0881056487072413,312.979432558054,"CHH","1:28630150:28632150","CGI_shore"]
[1,28644882,28644937,56,13,0.313404782038528,0.155285193533603,0.158119588504925,73.6895876973077,"CHH","1:28644876:28645842","CGI"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","1:28649523:28652086","CGI"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","exon","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","utr5","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","TSS","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","promoter","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28705496,28705752,257,62,0.307520851175379,0.182782480368792,0.124738370806587,308.504848848747,"CHH","1:28704582:28706583","CGI_shore"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","1:28727037:28729037","CGI_shore"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","Os01g0694900","promoter","Os01g0694900","Epsin-like, N-terminal domain containing protein && sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana OX=3702 GN=At2g01600 PE=2 SV=2 && PF07651:ANTH domain"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","Os01g0694800","promoter","Os01g0694800","Conserved hypothetical protein && - && -"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","1:28708999:28728119","CGI"]
[1,28822918,28823072,155,38,0.232952769880238,0.0920000549283562,0.140952714951882,189.523295604739,"CHH","1:28821237:28823238","CGI_shore"]
[1,28822918,28823072,155,38,0.232952769880238,0.0920000549283562,0.140952714951882,189.523295604739,"CHH","1:28821754:28823754","CGI_shore"]
[1,28845379,28845577,199,69,0.223517654745551,0.125825868737243,0.097691786008308,326.274000060508,"CHH","1:28843656:28845656","CGI_shore"]
[1,29011642,29011700,59,20,0.158082330621854,0.0829493288155162,0.0751330018063377,88.2608625516788,"CHH","1:29005931:29011933","CGI"]
[1,29011858,29011962,105,52,0.203302232082389,0.0732883346332455,0.130013897449144,306.530415860742,"CHH","1:29005931:29011933","CGI"]
[1,29011858,29011962,105,52,0.203302232082389,0.0732883346332455,0.130013897449144,306.530415860742,"CHH","1:29011933:29013934","CGI_shore"]
[1,29060921,29061208,288,66,0.31955876447834,0.182339729297275,0.137219035181064,306.651314152291,"CHH","1:29059380:29061380","CGI_shore"]
[1,29062413,29062847,435,144,0.39465191959215,0.258797427314201,0.135854492277949,673.511834192568,"CHH","1:29061931:29063932","CGI_shore"]
[1,29078056,29078131,76,15,0.0181474290002689,0.102530222697787,-0.084382793697518,-73.4687752241984,"CHH","Os01g0702000","promoter","OsBBD1","Protein of unknown function DUF151 domain containing protein && sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BBD1 PE=2 SV=1 && PF02577:Bifunctional nuclease"]
[1,29156099,29156388,290,72,0.264232510783895,0.115323935313461,0.148908575470434,432.289304667348,"CHH","1:29155516:29157517","CGI_shore"]
[1,29156099,29156388,290,72,0.264232510783895,0.115323935313461,0.148908575470434,432.289304667348,"CHH","1:29156166:29158166","CGI_shore"]
[1,29156099,29156388,290,72,0.264232510783895,0.115323935313461,0.148908575470434,432.289304667348,"CHH","Os01g0703400","promoter","farnesyl diphosphate synthase 1, farnesyl diphosphate synthase, FDP synthase","Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] && sp|P49353|FPPS_MAIZE Farnesyl pyrophosphate synthase OS=Zea mays OX=4577 GN=FPS PE=2 SV=1 && PF00348:Polyprenyl synthetase"]
[1,29212397,29212590,194,29,0.47262603605392,0.00996098994116545,0.462665046112755,227.137499121477,"CHH","1:29211700:29213700","CGI_shore"]
[1,29363133,29363260,128,20,0.215338237505491,0.0294441319774567,0.185894105528034,103.51057135834,"CHH","Os01g0707300","promoter","Os01g0707300","Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13) && sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1 && PF05008:Vesicle transport v-SNARE protein N-terminus"]
[1,29363133,29363260,128,20,0.215338237505491,0.0294441319774567,0.185894105528034,103.51057135834,"CHH","1:29344252:29365076","CGI"]
[1,29380318,29380423,106,27,0.28239617473805,0.13760719572201,0.14478897901604,104.938051876611,"CHH","1:29379029:29381030","CGI_shore"]
[1,29380318,29380423,106,27,0.28239617473805,0.13760719572201,0.14478897901604,104.938051876611,"CHH","1:29380086:29381286","CGI"]
[1,29425744,29425836,93,18,0.150341851303979,0.0601887549874337,0.0901530963165451,93.4333788620017,"CHH","1:29424273:29426274","CGI_shore"]
[1,29425744,29425836,93,18,0.150341851303979,0.0601887549874337,0.0901530963165451,93.4333788620017,"CHH","Os01g0708300","intron","Os01g0708300","Protein of unknown function DUF803 domain containing protein && sp|Q8RWH8|NIPA9_ARATH Probable magnesium transporter NIPA9 OS=Arabidopsis thaliana OX=3702 GN=At5g11960 PE=2 SV=1 && -"]
[1,29426495,29426658,164,46,0.398720972777596,0.252371259156008,0.146349713621588,236.134732699005,"CHH","Os01g0708300","intron","Os01g0708300","Protein of unknown function DUF803 domain containing protein && sp|Q8RWH8|NIPA9_ARATH Probable magnesium transporter NIPA9 OS=Arabidopsis thaliana OX=3702 GN=At5g11960 PE=2 SV=1 && -"]
[1,29498989,29499069,81,35,0.0818914041440395,0.0229560098641925,0.058935394279847,139.290442180554,"CHH","1:29498452:29500453","CGI_shore"]
[1,29498989,29499069,81,35,0.0818914041440395,0.0229560098641925,0.058935394279847,139.290442180554,"CHH","1:29499067:29501067","CGI_shore"]
[1,29524766,29525052,287,74,0.226201056418405,0.0984907931997113,0.127710263218694,388.486471357877,"CHH","1:29524484:29526485","CGI_shore"]
[1,29524766,29525052,287,74,0.226201056418405,0.0984907931997113,0.127710263218694,388.486471357877,"CHH","Os01g0710300","promoter","Os01g0710300","Conserved hypothetical protein && - && -"]
[1,29524766,29525052,287,74,0.226201056418405,0.0984907931997113,0.127710263218694,388.486471357877,"CHH","1:29523277:29525278","CGI_shore"]
[1,29525280,29525478,199,81,0.179814149584901,0.0763332965475739,0.103480853037327,529.026568269814,"CHH","1:29524484:29526485","CGI_shore"]
[1,29576835,29577243,409,87,0.659280168162306,0.45511447662376,0.204165691538547,466.111533200137,"CHH","1:29575230:29577230","CGI_shore"]
[1,29576835,29577243,409,87,0.659280168162306,0.45511447662376,0.204165691538547,466.111533200137,"CHH","1:29576172:29578172","CGI_shore"]
[1,29576835,29577243,409,87,0.659280168162306,0.45511447662376,0.204165691538547,466.111533200137,"CHH","1:29577231:29577480","CGI"]
[1,29596073,29596222,150,37,0.15702797435982,0.0596898258022314,0.0973381485575883,175.540335759952,"CHH","1:29594266:29596267","CGI_shore"]
[1,29596073,29596222,150,37,0.15702797435982,0.0596898258022314,0.0973381485575883,175.540335759952,"CHH","1:29595370:29597370","CGI_shore"]
[1,29645248,29645412,165,50,0.108454142716274,0.0156019254848956,0.0928522172313787,312.876594842289,"CHH","1:29643697:29645697","CGI_shore"]
[1,29645248,29645412,165,50,0.108454142716274,0.0156019254848956,0.0928522172313787,312.876594842289,"CHH","Os01g0713800","promoter","Os01g0713800","Similar to RNA binding && sp|B3LU25|KRR1_YEAS1 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) OX=285006 GN=KRR1 PE=3 SV=1 && PF17903:Krr1 KH1 domain"]
[1,29660511,29660634,124,60,0.146584728567879,0.072559833941724,0.0740248946261546,279.599004579235,"CHH","1:29658772:29660772","CGI_shore"]
[1,29661581,29661658,78,13,0.580564381389602,0.83001211929319,-0.249447737903588,-65.8174131354324,"CG","1:29661168:29663169","CGI_shore"]
[1,29661638,29661781,144,45,0.244531705163875,0.1097210126403,0.134810692523575,253.159269722982,"CHH","1:29661168:29663169","CGI_shore"]
[1,29865366,29865517,152,40,0.132876639961676,0.0186783968327331,0.114198243128943,168.536330022253,"CHH","Target=RETROFIT_I-int:2968-3452;Class=LTR/Copia","repeat"]
[1,29902825,29902883,59,18,0.07234583960127,0.193301007015782,-0.120955167414512,-87.7017072022112,"CHH","1:29896648:29913156","CGI"]
[1,29926115,29926203,89,14,0.172783704307995,0.0104423538018756,0.16234135050612,75.3529164340024,"CHH","1:29925885:29927885","CGI_shore"]
[1,29978482,29978632,151,25,0.170652707254928,0.019032785454074,0.151619921800854,136.714131761725,"CHH","1:29976527:29978527","CGI_shore"]
[1,29978482,29978632,151,25,0.170652707254928,0.019032785454074,0.151619921800854,136.714131761725,"CHH","1:29978528:29978908","CGI"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","1:29989801:29991801","CGI_shore"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719350","utr3","Os01g0719350","Hypothetical protein && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && -"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719350","exon","Os01g0719350","Hypothetical protein && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && -"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719300","exon","SULPHATE TRANSPORTER 3;6","Similar to Sulfate transporter 3.1 (AST12) (AtST1) && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && PF01740:STAS domain|PF00916:Sulfate permease family"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719300","intron","SULPHATE TRANSPORTER 3;6","Similar to Sulfate transporter 3.1 (AST12) (AtST1) && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && PF01740:STAS domain|PF00916:Sulfate permease family"]
[1,30030308,30030514,207,70,0.19934378064132,0.0770497762467072,0.122294004394613,384.752001470134,"CHH","1:30028798:30030798","CGI_shore"]
[1,30030308,30030514,207,70,0.19934378064132,0.0770497762467072,0.122294004394613,384.752001470134,"CHH","Os01g0720500","promoter","Os01g0720500","Similar to Type I chlorophyll a/b-binding protein b (Fragment) && sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB2R PE=2 SV=2 && PF00504:Chlorophyll A-B binding protein"]
[1,30090700,30090791,92,8,0.178279090689114,0.510902459720015,-0.332623369030901,-38.8414438795513,"CHG","Os01g0721700","promoter","Os01g0721700","Hypothetical genes && - && -"]
[1,30090700,30090791,92,8,0.178279090689114,0.510902459720015,-0.332623369030901,-38.8414438795513,"CHG","1:30088910:30090911","CGI_shore"]
[1,30090700,30090791,92,8,0.178279090689114,0.510902459720015,-0.332623369030901,-38.8414438795513,"CHG","Os01g0721800","promoter","Os01g0721800","Protein kinase-like domain containing protein && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && PF18052:Rx N-terminal domain"]
[1,30119913,30120045,133,20,0.855269054498944,0.690182626249124,0.16508642824982,76.024858695732,"CG","Os01g0722425","promoter","Os01g0722425","Hypothetical protein && sp|Q9FKL2|MYB36_ARATH Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1 && PF00249:Myb-like DNA-binding domain"]
[1,30238523,30238800,278,81,0.115410952504718,0.0533551681016177,0.0620557844031004,331.374159791398,"CHH","1:30236001:30239457","CGI"]
[1,30252222,30252378,157,32,0.446226473333211,0.26526618196316,0.180960291370051,172.393003252889,"CHH","Os01g0725600","intron","Os01g0725600","Regulator of chromosome condensation, RCC1 domain containing protein && sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3 && PF00415:Regulator of chromosome condensation (RCC1) repeat"]
[1,30252222,30252378,157,32,0.446226473333211,0.26526618196316,0.180960291370051,172.393003252889,"CHH","1:30251928:30253929","CGI_shore"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729100","intron","Os01g0729100","Protein of unknown function DUF92, transmembrane family protein && sp|Q9SYM0|VTE6_ARATH Protein VTE6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VTE6 PE=1 SV=1 && PF01940:Integral membrane protein DUF92"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729200","utr3","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729200","exon","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","1:30403340:30403711","CGI"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729200","utr5","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","1:30403711:30405712","CGI_shore"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","Os01g0729100","intron","Os01g0729100","Protein of unknown function DUF92, transmembrane family protein && sp|Q9SYM0|VTE6_ARATH Protein VTE6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VTE6 PE=1 SV=1 && PF01940:Integral membrane protein DUF92"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","Os01g0729200","exon","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","1:30403340:30403711","CGI"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","Os01g0729200","utr5","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","Os01g0729100","intron","Os01g0729100","Protein of unknown function DUF92, transmembrane family protein && sp|Q9SYM0|VTE6_ARATH Protein VTE6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VTE6 PE=1 SV=1 && PF01940:Integral membrane protein DUF92"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","Os01g0729200","exon","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","1:30403340:30403711","CGI"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","Os01g0729200","utr5","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","1:30403711:30405712","CGI_shore"]
[1,30420871,30420973,103,23,0.124747915674308,0.0346685264365322,0.0900793892377755,111.618517880162,"CHH","1:30419883:30421883","CGI_shore"]
[1,30425436,30425575,140,30,0.317770749555792,0.0979307206222697,0.219840028933522,171.9936379007,"CHH","Os01g0729900","promoter","Os01g0729900","Conserved hypothetical protein && - && -"]
[1,30425436,30425575,140,30,0.317770749555792,0.0979307206222697,0.219840028933522,171.9936379007,"CHH","1:30421884:30428057","CGI"]
[1,30425625,30425700,76,6,0.193597005886428,0.709455769410791,-0.515858763524363,-28.8519619012222,"CG","Os01g0729900","promoter","Os01g0729900","Conserved hypothetical protein && - && -"]
[1,30425625,30425700,76,6,0.193597005886428,0.709455769410791,-0.515858763524363,-28.8519619012222,"CG","1:30421884:30428057","CGI"]
[1,30451739,30451862,124,25,0.358965151554412,0.0294099795613852,0.329555171993027,171.707390051219,"CHH","1:30450512:30452513","CGI_shore"]
[1,30520127,30520187,61,15,0.0809735043963073,0.00337904879879228,0.0775944555975151,76.1732001321766,"CHH","1:30511940:30521611","CGI"]
[1,30520127,30520187,61,15,0.0809735043963073,0.00337904879879228,0.0775944555975151,76.1732001321766,"CHH","Os01g0731700","promoter","Os01g0731700","Hypothetical protein && sp|P16273|PRPX_HORVU Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2 && -"]
[1,30549528,30549613,86,25,0.330690881823332,0.197159638820639,0.133531243002694,110.433883382635,"CHH","1:30549091:30551092","CGI_shore"]
[1,30650209,30650365,157,60,0.203636203823364,0.056935439221143,0.146700764602221,279.992987195213,"CHH","1:30649035:30651036","CGI_shore"]
[1,30650209,30650365,157,60,0.203636203823364,0.056935439221143,0.146700764602221,279.992987195213,"CHH","1:30649941:30650421","CGI"]
[1,30651640,30651819,180,42,0.171217200167909,0.0536274425637974,0.117589757604112,239.278569848208,"CHH","1:30650421:30652422","CGI_shore"]
[1,30697137,30697199,63,23,0.13632296800178,0.0142409525502246,0.122082015451555,110.763060847264,"CHH","Os01g0736100","promoter","UDP-dependent glucosyltransferase 706C1","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q4R1I9|ANGLT_ROSHC Anthocyanidin 5,3-O-glucosyltransferase OS=Rosa hybrid cultivar OX=128735 GN=RhGT1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[1,30697137,30697199,63,23,0.13632296800178,0.0142409525502246,0.122082015451555,110.763060847264,"CHH","1:30684710:30700439","CGI"]
[1,30707186,30707292,107,24,0.0389133109843071,0.220773541599424,-0.181860230615117,-119.942604653413,"CHH","1:30705906:30707906","CGI_shore"]
[1,30752951,30753001,51,5,0.744054242783069,0.351033342773089,0.39302090000998,23.0747462535298,"CG","1:30751206:30753206","CGI_shore"]
[1,30752951,30753001,51,5,0.744054242783069,0.351033342773089,0.39302090000998,23.0747462535298,"CG","1:30751457:30753458","CGI_shore"]
[1,30752951,30753001,51,5,0.744054242783069,0.351033342773089,0.39302090000998,23.0747462535298,"CG","Os01g0737300","promoter","Os01g0737300","Similar to Phosphoesterase && sp|Q84JE8|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana OX=3702 GN=ZDP PE=1 SV=1 && PF00645:Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region|PF08645:Polynucleotide kinase 3 phosphatase"]
[1,30767393,30767459,67,17,0.356604382991462,0.231948015614909,0.124656367376553,69.375738720692,"CHH","Os01g0737600","promoter","Os01g0737600","Similar to OSIGBa0101A01.4 protein && - && PF01612:3'-5' exonuclease"]
[1,30767393,30767459,67,17,0.356604382991462,0.231948015614909,0.124656367376553,69.375738720692,"CHH","1:30761818:30773024","CGI"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","Os01g0742766","utr3","Os01g0742766","Hypothetical conserved gene && - && PF15925:SOSS complex subunit C"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","Os01g0742766","exon","Os01g0742766","Hypothetical conserved gene && - && PF15925:SOSS complex subunit C"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","Os01g0742500","promoter","HEXOKINASE-6","Similar to Hexokinase && sp|Q8LQ68|HXK6_ORYSJ Hexokinase-6 OS=Oryza sativa subsp. japonica OX=39947 GN=HXK6 PE=1 SV=1 && PF03727:Hexokinase|PF00349:Hexokinase"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","1:31014724:31016725","CGI_shore"]
[1,31123946,31124006,61,17,0.178089979796634,0.0759433013628437,0.102146678433791,83.6734706228236,"CHH","Os01g0744550","intron","Os01g0744550","Hypothetical protein && sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0744400 PE=2 SV=1 && -"]
[1,31123946,31124006,61,17,0.178089979796634,0.0759433013628437,0.102146678433791,83.6734706228236,"CHH","Os01g0744400","intron","Os01g0744400","Similar to Isoform 2 of Golgin candidate 1 && sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0744400 PE=2 SV=1 && PF09787:Golgin subfamily A member 5"]
[1,31123946,31124006,61,17,0.178089979796634,0.0759433013628437,0.102146678433791,83.6734706228236,"CHH","1:31122918:31124919","CGI_shore"]
[1,31135967,31136104,138,39,0.310456903587925,0.166840838584837,0.143616065003088,195.596105177784,"CHH","1:31134576:31136576","CGI_shore"]
[1,31135967,31136104,138,39,0.310456903587925,0.166840838584837,0.143616065003088,195.596105177784,"CHH","1:31135158:31137159","CGI_shore"]
[1,31212098,31212230,133,26,0.0146066957061009,0.215781910122342,-0.201175214416241,-136.988397311927,"CHH","1:31210439:31212439","CGI_shore"]
[1,31234698,31234751,54,9,0.205556964402114,0.328190738053399,-0.122633773651285,-41.7914758801162,"CG","Target=RETROFIT_I-int:1-2318;Class=LTR/Copia","repeat"]
[1,31235714,31235871,158,9,0.310449068713344,0.0607449718945222,0.249704096818821,45.6981168443693,"CHG","Target=RETROFIT_I-int:1-2318;Class=LTR/Copia","repeat"]
[1,31235714,31235871,158,9,0.310449068713344,0.0607449718945222,0.249704096818821,45.6981168443693,"CHG","1:31234884:31236884","CGI_shore"]
[1,31281485,31281684,200,66,0.219869834010231,0.115842768788467,0.104027065221764,288.119559599886,"CHH","1:31277458:31288491","CGI"]
[1,31282670,31282843,174,56,0.306489633725992,0.158587921407921,0.147901712318072,283.29498627442,"CHH","1:31277458:31288491","CGI"]
[1,31282670,31282843,174,56,0.306489633725992,0.158587921407921,0.147901712318072,283.29498627442,"CHH","Os01g0747500","promoter","PYRC","Similar to Dihydroorotase (EC 3.5.2.3) && sp|Q0JJD1|PYRC_ORYSJ Dihydroorotase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=PYRC PE=2 SV=1 && PF01979:Amidohydrolase family"]
[1,31283540,31283635,96,27,0.493202788686078,0.230465766069348,0.262737022616729,177.796431493571,"CHH","1:31277458:31288491","CGI"]
[1,31283540,31283635,96,27,0.493202788686078,0.230465766069348,0.262737022616729,177.796431493571,"CHH","Os01g0747500","promoter","PYRC","Similar to Dihydroorotase (EC 3.5.2.3) && sp|Q0JJD1|PYRC_ORYSJ Dihydroorotase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=PYRC PE=2 SV=1 && PF01979:Amidohydrolase family"]
[1,31306754,31306868,115,34,0.223112679788573,0.0887624863978245,0.134350193390748,186.71659837251,"CHH","1:31306464:31308465","CGI_shore"]
[1,31337681,31337756,76,18,0.32757006709565,0.157778055293686,0.169792011801964,92.0310571004778,"CHH","1:31337045:31339045","CGI_shore"]
[1,31337681,31337756,76,18,0.32757006709565,0.157778055293686,0.169792011801964,92.0310571004778,"CHH","Os01g0748600","promoter","Os01g0748600","Similar to Protein kinase family protein && sp|F4IS56|ILK1_ARATH Integrin-linked protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=ILK1 PE=1 SV=1 && -"]
[1,31337681,31337756,76,18,0.32757006709565,0.157778055293686,0.169792011801964,92.0310571004778,"CHH","1:31337273:31339274","CGI_shore"]
[1,31342020,31342238,219,65,0.228972765520891,0.0739385707659065,0.155034194754985,355.332350548662,"CHH","Os01g0748800","promoter","Os01g0748800","Similar to ZCN12 && sp|Q8VWH2|RFT1_ORYSJ Protein RICE FLOWERING LOCUS T 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFT1 PE=1 SV=1 && -"]
[1,31356500,31356610,111,20,0.0270135021591443,0.0942763082563388,-0.0672628060971945,-91.0963225568798,"CHH","1:31355156:31357156","CGI_shore"]
[1,31356500,31356610,111,20,0.0270135021591443,0.0942763082563388,-0.0672628060971945,-91.0963225568798,"CHH","Os01g0748950","intron","Os01g0748950","Similar to predicted protein && sp|Q93VV5|PTR16_ARATH Protein NRT1/ PTR FAMILY 4.3 OS=Arabidopsis thaliana OX=3702 GN=NPF4.3 PE=2 SV=1 && PF00854:POT family"]
[1,31530220,31530325,106,36,0.0523538482675624,0.0210270289996672,0.0313268192678952,144.995742832889,"CHH","1:31529810:31531811","CGI_shore"]
[1,31536587,31536681,95,9,0.335292657898232,0.741409117190929,-0.406116459292696,-38.8393927032288,"CHG","1:31534702:31536702","CGI_shore"]
[1,31538460,31538521,62,13,0.12511058955668,0.00436055523762762,0.120750034319052,79.5203473029428,"CHH","1:31536951:31538952","CGI_shore"]
[1,31538460,31538521,62,13,0.12511058955668,0.00436055523762762,0.120750034319052,79.5203473029428,"CHH","1:31537075:31539075","CGI_shore"]
[1,31679179,31679273,95,22,0.104982216505968,0.0397189255638266,0.0652632909421413,105.732140956669,"CHH","Os01g0755100","intron","Os01g0755100","Conserved hypothetical protein && sp|P16128|Y4849_ARATH Uncharacterized protein At4g18490 OS=Arabidopsis thaliana OX=3702 GN=At4g18490 PE=4 SV=3 && -"]
[1,31745771,31745821,51,20,0.122434851225203,0.0576998089716138,0.0647350422535897,104.713838863386,"CHH","1:31744374:31746374","CGI_shore"]
[1,31745771,31745821,51,20,0.122434851225203,0.0576998089716138,0.0647350422535897,104.713838863386,"CHH","1:31745689:31747690","CGI_shore"]
[1,31806640,31806746,107,20,0.179070262396481,0.0108596511524819,0.168210611243999,108.742746774363,"CHH","Os01g0757400","promoter","SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4b","Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2 && sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis OX=8364 GN=katnal2 PE=2 SV=1 && PF00004:ATPase family associated with various cellular activities (AAA)|PF17862:AAA+ lid domain"]
[1,31806640,31806746,107,20,0.179070262396481,0.0108596511524819,0.168210611243999,108.742746774363,"CHH","1:31804988:31806988","CGI_shore"]
[1,31870053,31870160,108,25,0.274900740452682,0.164953013750387,0.109947726702295,110.244498274213,"CHH","Os01g0758450","promoter","Os01g0758450","Hypothetical protein && sp|O04928|CDS1_ARATH Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=CDS1 PE=1 SV=1 && -"]
[1,31940349,31940447,99,26,0.178576628723864,0.076743891529856,0.101832737194008,138.708106834852,"CHH","Os01g0759200","promoter","CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30","CBL(calcineurin B-like proteins)-interaction protein kinase protein, Resistance to Rice stripe virus (RSV) diseas && sp|Q5JLQ9|CIPKU_ORYSJ CBL-interacting protein kinase 30 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK30 PE=2 SV=1 && PF00069:Protein kinase domain|PF03822:NAF domain"]
[1,31940349,31940447,99,26,0.178576628723864,0.076743891529856,0.101832737194008,138.708106834852,"CHH","1:31940185:31942186","CGI_shore"]
[1,31968544,31968807,264,52,0.125240382244495,0.0450607353747925,0.0801796468697021,246.416121331216,"CHH","1:31967220:31969220","CGI_shore"]
[1,31968544,31968807,264,52,0.125240382244495,0.0450607353747925,0.0801796468697021,246.416121331216,"CHH","Os01g0759700","promoter","Os01g0759700","Similar to transcription regulator && sp|Q9UHR5|S30BP_HUMAN SAP30-binding protein OS=Homo sapiens OX=9606 GN=SAP30BP PE=1 SV=1 && PF07818:HCNGP-like protein"]
[1,32073511,32073589,79,20,0.22225234986779,0.0775197407735033,0.144732609094287,114.36161513404,"CHH","Os01g0762300","promoter","Os01g0762300","Similar to predicted protein && - && -"]
[1,32073511,32073589,79,20,0.22225234986779,0.0775197407735033,0.144732609094287,114.36161513404,"CHH","1:32072147:32074148","CGI_shore"]
[1,32073511,32073589,79,20,0.22225234986779,0.0775197407735033,0.144732609094287,114.36161513404,"CHH","Os01g0762400","intron","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32074014,32074124,111,35,0.0844798874523203,0.00764441041556047,0.0768354770367598,188.082135265517,"CHH","1:32072147:32074148","CGI_shore"]
[1,32074014,32074124,111,35,0.0844798874523203,0.00764441041556047,0.0768354770367598,188.082135265517,"CHH","Os01g0762400","intron","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32082817,32082941,125,30,0.209550810110436,0.100548025614017,0.109002784496419,146.067480586855,"CHH","1:32081834:32084326","CGI"]
[1,32082817,32082941,125,30,0.209550810110436,0.100548025614017,0.109002784496419,146.067480586855,"CHH","Os01g0762400","promoter","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32084350,32084423,74,23,0.0679347000644012,0.00629279562054266,0.0616419044438585,75.2079627257713,"CHH","Os01g0762400","promoter","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32084350,32084423,74,23,0.0679347000644012,0.00629279562054266,0.0616419044438585,75.2079627257713,"CHH","1:32084326:32086327","CGI_shore"]
[1,32176203,32177073,871,34,0.259286899253263,0.0820578036664467,0.177229095586816,211.516733055054,"CHH","Os01g0764400","promoter","chorismate mutase","Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1) && sp|B4FNK8|CM1_MAIZE Chorismate mutase 1, chloroplastic OS=Zea mays OX=4577 GN=CM1 PE=1 SV=1 && -"]
[1,32176203,32177073,871,34,0.259286899253263,0.0820578036664467,0.177229095586816,211.516733055054,"CHH","1:32175671:32177672","CGI_shore"]
[1,32229333,32229551,219,16,0.556226357726518,0.843174766332411,-0.286948408605894,-100.019860160862,"CG","Os01g0764900","intron","Os01g0764900","Similar to Formamidase && sp|Q50228|FMDA_METME Formamidase OS=Methylophilus methylotrophus OX=17 GN=fmdA PE=1 SV=1 && PF03069:Acetamidase/Formamidase family"]
[1,32229333,32229551,219,16,0.556226357726518,0.843174766332411,-0.286948408605894,-100.019860160862,"CG","Os01g0764900","exon","Os01g0764900","Similar to Formamidase && sp|Q50228|FMDA_METME Formamidase OS=Methylophilus methylotrophus OX=17 GN=fmdA PE=1 SV=1 && PF03069:Acetamidase/Formamidase family"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","Os01g0765000","promoter","STRIPE 2","Putative dCMP deaminase, Chloroplast developmen && sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS=Drosophila melanogaster OX=7227 GN=CG6951 PE=2 SV=1 && -"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","1:32239126:32241127","CGI_shore"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","Os01g0765200","promoter","Os01g0765200","Conserved hypothetical protein && - && -"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","1:32240295:32241790","CGI"]
[1,32272930,32273044,115,26,0.189871612560613,0.0287500503772917,0.161121562183321,108.652157566149,"CHH","Os01g0766000","promoter","Os01g0766000","Multi antimicrobial extrusion protein MatE family protein && sp|F4I4Q3|DTX32_ARATH Protein DETOXIFICATION 32 OS=Arabidopsis thaliana OX=3702 GN=DTX32 PE=3 SV=1 && PF01554:MatE"]
[1,32273869,32274001,133,29,0.136779792733409,0.0172207036267655,0.119559089106643,120.906466979096,"CHH","Os01g0766000","promoter","Os01g0766000","Multi antimicrobial extrusion protein MatE family protein && sp|F4I4Q3|DTX32_ARATH Protein DETOXIFICATION 32 OS=Arabidopsis thaliana OX=3702 GN=DTX32 PE=3 SV=1 && PF01554:MatE"]
[1,32280312,32280389,78,37,0.133095367393115,0.0753292688668922,0.0577660985262229,148.569215018166,"CHH","1:32277056:32281552","CGI"]
[1,32280312,32280389,78,37,0.133095367393115,0.0753292688668922,0.0577660985262229,148.569215018166,"CHH","1:32280169:32282169","CGI_shore"]
[1,32280357,32280416,60,9,0.824953451628168,0.886496257837702,-0.0615428062095342,-33.6475158719401,"CG","1:32277056:32281552","CGI"]
[1,32280357,32280416,60,9,0.824953451628168,0.886496257837702,-0.0615428062095342,-33.6475158719401,"CG","1:32280169:32282169","CGI_shore"]
[1,32282750,32282800,51,19,0.144200923154735,0.0550827958352454,0.0891181273194893,91.0355299333477,"CHH","1:32281552:32283553","CGI_shore"]
[1,32282750,32282800,51,19,0.144200923154735,0.0550827958352454,0.0891181273194893,91.0355299333477,"CHH","1:32282709:32284710","CGI_shore"]
[1,32296442,32296541,100,23,0.268205611610755,0.749072225677324,-0.48086661406657,-139.978831291127,"CG","1:32293784:32296541","CGI"]
[1,32296442,32296541,100,23,0.268205611610755,0.749072225677324,-0.48086661406657,-139.978831291127,"CG","1:32296303:32298303","CGI_shore"]
[1,32310125,32310293,169,53,0.119605530246266,0.0267872122127693,0.0928183180334968,275.255746843826,"CHH","1:32309415:32311416","CGI_shore"]
[1,32310125,32310293,169,53,0.119605530246266,0.0267872122127693,0.0928183180334968,275.255746843826,"CHH","1:32309669:32311669","CGI_shore"]
[1,32333752,32333942,191,43,0.505499672831156,0.314957349727235,0.190542323103921,223.415637976756,"CHH","1:32332098:32334098","CGI_shore"]
[1,32333752,32333942,191,43,0.505499672831156,0.314957349727235,0.190542323103921,223.415637976756,"CHH","1:32332822:32334822","CGI_shore"]
[1,32333752,32333942,191,43,0.505499672831156,0.314957349727235,0.190542323103921,223.415637976756,"CHH","1:32333015:32335016","CGI_shore"]
[1,32376330,32376408,79,18,0.225649728804905,0.11717312067806,0.108476608126845,76.2685673372736,"CHH","1:32372173:32380706","CGI"]
[1,32384659,32384861,203,36,0.300120187821735,0.0131570365106295,0.286963151311105,233.896230566798,"CHH","1:32383285:32385285","CGI_shore"]
[1,32384659,32384861,203,36,0.300120187821735,0.0131570365106295,0.286963151311105,233.896230566798,"CHH","Os01g0768200","intron","Os01g0768200","TRAM, LAG1 and CLN8 homology domain containing protein && - && PF03798:TLC domain"]
[1,32498039,32498104,66,15,0.22405878642003,0.0439218287771679,0.180136957642862,74.1192684940309,"CHH","1:32497672:32498074","CGI"]
[1,32498039,32498104,66,15,0.22405878642003,0.0439218287771679,0.180136957642862,74.1192684940309,"CHH","1:32498074:32500075","CGI_shore"]
[1,32571998,32572072,75,24,0.175203582465981,0.0767876957923591,0.0984158866736218,123.453791007792,"CHH","1:32571434:32573435","CGI_shore"]
[1,32571998,32572072,75,24,0.175203582465981,0.0767876957923591,0.0984158866736218,123.453791007792,"CHH","1:32572044:32574044","CGI_shore"]
[1,32572774,32572894,121,31,0.0120225124861406,0.0865345167043454,-0.0745120042182048,-151.740669830053,"CHH","1:32571434:32573435","CGI_shore"]
[1,32572774,32572894,121,31,0.0120225124861406,0.0865345167043454,-0.0745120042182048,-151.740669830053,"CHH","1:32572044:32574044","CGI_shore"]
[1,32604938,32605123,186,56,0.292089449400313,0.162914533533686,0.129174915866627,273.954764874459,"CHH","1:32601343:32616276","CGI"]
[1,32607324,32607408,85,36,0.0238223986907689,0.086017200278261,-0.0621948015874921,-193.906345998178,"CHH","Os01g0772400","promoter","OsSTA34","Streptomyces cyclase/dehydrase family protein && sp|Q6DFA6|CQ10A_XENLA Coenzyme Q-binding protein COQ10 homolog A, mitochondrial OS=Xenopus laevis OX=8355 GN=coq10b-a PE=2 SV=1 && PF03364:Polyketide cyclase / dehydrase and lipid transport"]
[1,32607324,32607408,85,36,0.0238223986907689,0.086017200278261,-0.0621948015874921,-193.906345998178,"CHH","1:32601343:32616276","CGI"]
[1,32692087,32692154,68,20,0.181948938985265,0.0805902050226644,0.1013587339626,108.129989738342,"CHH","Os01g0773400","promoter","Os01g0773400","Conserved hypothetical protein && - && -"]
[1,32717267,32717392,126,23,0.0951095718582376,0.00404114838461142,0.0910684234736261,117.397845034488,"CHH","1:32715672:32717673","CGI_shore"]
[1,32717267,32717392,126,23,0.0951095718582376,0.00404114838461142,0.0910684234736261,117.397845034488,"CHH","1:32715876:32717876","CGI_shore"]
[1,32834596,32834662,67,13,0.47412576126062,0.792316957568465,-0.318191196307845,-66.1545658293913,"CG","Os01g0776300","promoter","Os01g0776300","Protein of unknown function DUF26 domain containing protein && - && -"]
[1,32834596,32834662,67,13,0.47412576126062,0.792316957568465,-0.318191196307845,-66.1545658293913,"CG","1:32830762:32837825","CGI"]
[1,32834596,32834662,67,13,0.47412576126062,0.792316957568465,-0.318191196307845,-66.1545658293913,"CG","Os01g0775750","intron","Os01g0775750","Hypothetical protein && - && PF01657:Salt stress response/antifungal"]
[1,32889192,32889284,93,8,0.385549604052678,0.679695641433864,-0.294146037381187,-43.7501208169637,"CG","1:32887374:32889375","CGI_shore"]
[1,32889192,32889284,93,8,0.385549604052678,0.679695641433864,-0.294146037381187,-43.7501208169637,"CG","Os01g0777200","exon","Os01g0777200","Peptidase aspartic, catalytic domain containing protein && sp|Q4V3D2|ASP36_ARATH Aspartic proteinase 36 OS=Arabidopsis thaliana OX=3702 GN=A36 PE=1 SV=1 && PF14541:Xylanase inhibitor C-terminal|PF14543:Xylanase inhibitor N-terminal"]
[1,32949940,32950119,180,58,0.236182737291713,0.104963871147022,0.131218866144691,323.346990370106,"CHH","Os01g0778500","promoter","Os01g0778500","Similar to predicted protein && - && -"]
[1,32949940,32950119,180,58,0.236182737291713,0.104963871147022,0.131218866144691,323.346990370106,"CHH","1:32939864:32950931","CGI"]
[1,32950427,32950597,171,65,0.243823255343976,0.103409738148437,0.140413517195539,378.043157439866,"CHH","Os01g0778500","promoter","Os01g0778500","Similar to predicted protein && - && -"]
[1,32950427,32950597,171,65,0.243823255343976,0.103409738148437,0.140413517195539,378.043157439866,"CHH","1:32939864:32950931","CGI"]
[1,32952878,32953106,229,56,0.219570093567137,0.0937830857727021,0.125787007794435,278.838668492145,"CHH","1:32950931:32952932","CGI_shore"]
[1,32955067,32955314,248,57,0.445635232043019,0.270114109900188,0.175521122142831,349.540573018607,"CHH","1:32954719:32956719","CGI_shore"]
[1,32955067,32955314,248,57,0.445635232043019,0.270114109900188,0.175521122142831,349.540573018607,"CHH","Os01g0778700","promoter","Os01g0778700","Similar to Transmembrane protein 49 && sp|Q5XF36|KMS1_ARATH Vacuole membrane protein KMS1 OS=Arabidopsis thaliana OX=3702 GN=KMS1 PE=1 SV=1 && PF09335:SNARE associated Golgi protein"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","promoter","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","1:32984363:32986364","CGI_shore"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","1:32984952:32985506","CGI"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","TSS","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","exon","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","intron","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,33047051,33047117,67,33,0.101955534180979,0.00533993735712986,0.0966155968238496,312.324141293522,"CHH","1:33046635:33048663","CGI"]
[1,33047291,33047364,74,20,0.0762280663853216,0.0121018734446749,0.0641261929406467,103.736447812353,"CHH","1:33046635:33048663","CGI"]
[1,33082138,33082238,101,11,0.791671343737485,0.451307856724863,0.340363487012622,66.5675050820713,"CG","1:33081810:33084080","CGI"]
[1,33082138,33082238,101,11,0.791671343737485,0.451307856724863,0.340363487012622,66.5675050820713,"CG","Os01g0780900","utr5","Os01g0780900","Hypothetical conserved gene && - && PF12620:Protein of unknown function (DUF3778)"]
[1,33082138,33082238,101,11,0.791671343737485,0.451307856724863,0.340363487012622,66.5675050820713,"CG","Os01g0780900","exon","Os01g0780900","Hypothetical conserved gene && - && PF12620:Protein of unknown function (DUF3778)"]
[1,33085934,33086084,151,38,0.236751646700822,0.496609869343677,-0.259858222642855,-203.002120206015,"CHH","1:33084080:33086081","CGI_shore"]
[1,33085934,33086084,151,38,0.236751646700822,0.496609869343677,-0.259858222642855,-203.002120206015,"CHH","1:33085546:33087547","CGI_shore"]
[1,33149904,33150020,117,33,0.197782440714528,0.10677514369279,0.0910072970217388,146.231240064575,"CHH","1:33148236:33150237","CGI_shore"]
[1,33149904,33150020,117,33,0.197782440714528,0.10677514369279,0.0910072970217388,146.231240064575,"CHH","1:33149474:33151474","CGI_shore"]
[1,33149904,33150020,117,33,0.197782440714528,0.10677514369279,0.0910072970217388,146.231240064575,"CHH","Os01g0782200","intron","Os01g0782200","Diacylglycerol kinase, catalytic region domain containing protein && sp|F2Y4A3|SPHK2_ARATH Sphingosine kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SPHK2 PE=1 SV=1 && PF00781:Diacylglycerol kinase catalytic domain"]
[1,33171404,33171605,202,56,0.0885227173626679,0.23869673591494,-0.150174018552272,-313.353359882148,"CHH","1:33168476:33173184","CGI"]
[1,33171404,33171605,202,56,0.0885227173626679,0.23869673591494,-0.150174018552272,-313.353359882148,"CHH","Os01g0782800","intron","CYCLIC NUCLEOTIDE GATED CHANNEL 1","Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1) && sp|Q94AS9|CNGC4_ARATH Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana OX=3702 GN=CNGC4 PE=2 SV=2 && PF00027:Cyclic nucleotide-binding domain|PF00520:Ion transport protein"]
[1,33176143,33176286,144,40,0.115827302706333,0.0107404976372633,0.10508680506907,189.033838712734,"CHH","1:33175144:33177144","CGI_shore"]
[1,33176143,33176286,144,40,0.115827302706333,0.0107404976372633,0.10508680506907,189.033838712734,"CHH","1:33176049:33178050","CGI_shore"]
[1,33225244,33225371,128,42,0.188045444002531,0.436322572083017,-0.248277128080486,-224.100908878819,"CG","1:33223759:33225760","CGI_shore"]
[1,33225244,33225371,128,42,0.188045444002531,0.436322572083017,-0.248277128080486,-224.100908878819,"CG","1:33225243:33240120","CGI"]
[1,33225573,33225702,130,51,0.248154826102182,0.0751632335726177,0.172991592529564,260.51328354519,"CG","1:33223759:33225760","CGI_shore"]
[1,33225573,33225702,130,51,0.248154826102182,0.0751632335726177,0.172991592529564,260.51328354519,"CG","1:33225243:33240120","CGI"]
[1,33225573,33225702,130,51,0.248154826102182,0.0751632335726177,0.172991592529564,260.51328354519,"CG","Os01g0784200","promoter","Os01g0784200","Serine/threonine protein kinase-related domain containing protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF00954:S-locus glycoprotein domain|PF08276:PAN-like domain|PF11883:Domain of unknown function (DUF3403)|PF01453:D-mannose binding lectin"]
[1,33246935,33247189,255,74,0.362320699239969,0.212481387811613,0.149839311428356,404.494973244247,"CHH","Os01g0784600","intron","Os01g0784600","Similar to nodulation protein-related && - && -"]
[1,33246935,33247189,255,74,0.362320699239969,0.212481387811613,0.149839311428356,404.494973244247,"CHH","Os01g0784725","promoter","Os01g0784725","Hypothetical protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && -"]
[1,33250986,33251223,238,39,0.254909225252678,0.118942435243456,0.135966790009222,199.903085857279,"CHH","1:33249634:33251634","CGI_shore"]
[1,33250986,33251223,238,39,0.254909225252678,0.118942435243456,0.135966790009222,199.903085857279,"CHH","Os01g0784700","intron","Os01g0784700","Serine/threonine protein kinase-related domain containing protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF11883:Domain of unknown function (DUF3403)|PF08276:PAN-like domain"]
[1,33250986,33251223,238,39,0.254909225252678,0.118942435243456,0.135966790009222,199.903085857279,"CHH","Os01g0784725","intron","Os01g0784725","Hypothetical protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && -"]
[1,33252244,33252336,93,17,0.334859938962984,0.194951606032394,0.139908332930589,77.094278655328,"CHH","Os01g0784700","intron","Os01g0784700","Serine/threonine protein kinase-related domain containing protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF11883:Domain of unknown function (DUF3403)|PF08276:PAN-like domain"]
[1,33252244,33252336,93,17,0.334859938962984,0.194951606032394,0.139908332930589,77.094278655328,"CHH","Os01g0784725","intron","Os01g0784725","Hypothetical protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && -"]
[1,33252244,33252336,93,17,0.334859938962984,0.194951606032394,0.139908332930589,77.094278655328,"CHH","1:33251940:33253941","CGI_shore"]
[1,33260866,33260981,116,45,0.159966889213129,0.0832225859482743,0.0767443032648551,209.491896114647,"CHH","1:33258917:33260918","CGI_shore"]
[1,33263393,33263453,61,14,0.138847812818225,0.0228940091417378,0.115953803676487,83.962405213963,"CHH","Os01g0784800","promoter","Os01g0784800","Flavodoxin/nitric oxide synthase domain containing protein && sp|Q9LSQ5|FQR1_ARATH NAD(P)H dehydrogenase (quinone) FQR1 OS=Arabidopsis thaliana OX=3702 GN=FQR1 PE=1 SV=1 && PF03358:NADPH-dependent FMN reductase"]
[1,33287699,33287763,65,7,0.601910848915691,0.300368006242733,0.301542842672958,32.2616578032663,"CHG","1:33286177:33288178","CGI_shore"]
[1,33304132,33304322,191,52,0.29782925768619,0.141848224087069,0.155981033599122,312.884060104086,"CHH","1:33302211:33304212","CGI_shore"]
[1,33304132,33304322,191,52,0.29782925768619,0.141848224087069,0.155981033599122,312.884060104086,"CHH","1:33302973:33304973","CGI_shore"]
[1,33304132,33304322,191,52,0.29782925768619,0.141848224087069,0.155981033599122,312.884060104086,"CHH","1:33303191:33305192","CGI_shore"]
[1,33365599,33365779,181,39,0.185165626075301,0.0447755763284373,0.140390049746864,253.405624767676,"CHH","1:33364481:33366481","CGI_shore"]
[1,33365599,33365779,181,39,0.185165626075301,0.0447755763284373,0.140390049746864,253.405624767676,"CHH","Os01g0786800","intron","Os01g0786800","Protein of unknown function DUF81 domain containing protein && sp|F4JIP9|TAUE5_ARATH Sulfite exporter TauE/SafE family protein 5 OS=Arabidopsis thaliana OX=3702 GN=At4g21250 PE=2 SV=1 && PF01925:Sulfite exporter TauE/SafE"]
[1,33378162,33378273,112,8,0.196709070465009,0.677825128612015,-0.481116058147006,-43.497051109437,"CG","1:33377867:33379868","CGI_shore"]
[1,33388177,33388324,148,57,0.129461691472731,0.0402693878585968,0.0891923036141339,258.095953741386,"CHH","1:33386341:33388341","CGI_shore"]
[1,33388177,33388324,148,57,0.129461691472731,0.0402693878585968,0.0891923036141339,258.095953741386,"CHH","Os01g0787300","promoter","Os01g0787300","Hypothetical conserved gene && sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 && -"]
[1,33411201,33411339,139,47,0.0159503448896185,0.125972361728973,-0.110022016839355,-268.637588229221,"CHH","1:33410082:33412083","CGI_shore"]
[1,33411201,33411339,139,47,0.0159503448896185,0.125972361728973,-0.110022016839355,-268.637588229221,"CHH","Os01g0787600","promoter","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33411201,33411339,139,47,0.0159503448896185,0.125972361728973,-0.110022016839355,-268.637588229221,"CHH","Os01g0787600","intron","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33411926,33412018,93,24,0.0320130785910756,0.207180999930672,-0.175167921339596,-123.637203412101,"CHH","1:33410082:33412083","CGI_shore"]
[1,33411926,33412018,93,24,0.0320130785910756,0.207180999930672,-0.175167921339596,-123.637203412101,"CHH","Os01g0787600","promoter","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33411926,33412018,93,24,0.0320130785910756,0.207180999930672,-0.175167921339596,-123.637203412101,"CHH","Os01g0787600","intron","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33412074,33412148,75,25,0.0769940102257588,0.254997629108882,-0.178003618883123,-140.510460807396,"CHH","1:33410082:33412083","CGI_shore"]
[1,33412074,33412148,75,25,0.0769940102257588,0.254997629108882,-0.178003618883123,-140.510460807396,"CHH","Os01g0787600","promoter","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33412074,33412148,75,25,0.0769940102257588,0.254997629108882,-0.178003618883123,-140.510460807396,"CHH","Os01g0787600","intron","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33451610,33452231,622,69,0.0480923071856815,0.212841537809759,-0.164749230624078,-225.927556705178,"CHH","1:33443956:33454533","CGI"]
[1,33451610,33452231,622,69,0.0480923071856815,0.212841537809759,-0.164749230624078,-225.927556705178,"CHH","Os01g0788400","promoter","PECTIN METHYLESTERASE 6","Similar to Pectinesterase (EC 3.1.1.11) (Fragment) && sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum OX=4081 GN=PME2.1 PE=2 SV=2 && PF04043:Plant invertase/pectin methylesterase inhibitor|PF01095:Pectinesterase"]
[1,33470509,33470612,104,36,0.196762317365386,0.0717356763923401,0.125026640973046,197.372289444811,"CHH","1:33470013:33472014","CGI_shore"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","1:33492535:33494535","CGI_shore"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","Os01g0789200","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 45","Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1) && sp|F4JEQ2|PBL23_ARATH Probable serine/threonine-protein kinase PBL23 OS=Arabidopsis thaliana OX=3702 GN=PBL23 PE=2 SV=1 && PF00069:Protein kinase domain"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","Os01g0789100","promoter","Os01g0789100","CDP-alcohol phosphatidyltransferase family protein && sp|Q5N9A1|PGPS1_ORYSJ CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0789100 PE=2 SV=1 && PF01066:CDP-alcohol phosphatidyltransferase"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","1:33493016:33495017","CGI_shore"]
[1,33497059,33497476,418,82,0.385473898374642,0.20940327916131,0.176070619213332,448.52949424622,"CHH","1:33496332:33498333","CGI_shore"]
[1,33497059,33497476,418,82,0.385473898374642,0.20940327916131,0.176070619213332,448.52949424622,"CHH","Os01g0791151","promoter","Os01g0791151","Hypothetical gene && sp|Q0WRY5|PBL7_ARATH Probable serine/threonine-protein kinase PBL7 OS=Arabidopsis thaliana OX=3702 GN=PBL7 PE=1 SV=1 && -"]
[1,33598161,33598276,116,31,0.341898228602838,0.758553846050947,-0.416655617448109,-171.492384982656,"CG","1:33597761:33599504","CGI"]
[1,33616622,33616778,157,37,0.0684113748013142,0.343353763323053,-0.274942388521739,-253.524967391352,"CHH","Os01g0793600","promoter","Os01g0793600","Conserved hypothetical protein && - && -"]
[1,33616622,33616778,157,37,0.0684113748013142,0.343353763323053,-0.274942388521739,-253.524967391352,"CHH","1:33613886:33622097","CGI"]
[1,33633216,33633302,87,13,0.816722973548916,0.466489368415667,0.350233605133249,66.1493523540431,"CG","1:33631838:33633839","CGI_shore"]
[1,33633216,33633302,87,13,0.816722973548916,0.466489368415667,0.350233605133249,66.1493523540431,"CG","1:33632809:33634299","CGI"]
[1,33633216,33633302,87,13,0.816722973548916,0.466489368415667,0.350233605133249,66.1493523540431,"CG","Target=(CGG)n:2-160;Class=Simple_repeat","repeat"]
[1,33655343,33655440,98,18,0.0886392984478858,0.0134314451417002,0.0752078533061856,123.388931983997,"CHH","Os01g0794650","promoter","Os01g0794650","Similar to Sodium/hydrogen exchanger family protein && sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHX23 PE=1 SV=1 && -"]
[1,33655343,33655440,98,18,0.0886392984478858,0.0134314451417002,0.0752078533061856,123.388931983997,"CHH","1:33654012:33658348","CGI"]
[1,33655343,33655440,98,18,0.0886392984478858,0.0134314451417002,0.0752078533061856,123.388931983997,"CHH","Os01g0794500","promoter","Os01g0794500","Translation initiation factor SUI1 domain containing protein && sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1 && PF01253:Translation initiation factor SUI1"]
[1,33658055,33658129,75,8,0.0266086420771072,0.35801421374798,-0.331405571670872,-37.9834724880709,"CHG","1:33654012:33658348","CGI"]
[1,33658055,33658129,75,8,0.0266086420771072,0.35801421374798,-0.331405571670872,-37.9834724880709,"CHG","Os01g0794800","promoter","Os01g0794800","Similar to Subtilase && sp|Q9ZSB1|SBT3A_ARATH Subtilisin-like protease SBT3.10 OS=Arabidopsis thaliana OX=3702 GN=SBT3.10 PE=3 SV=2 && PF05922:Peptidase inhibitor I9|PF00082:Subtilase family|PF17766:Fibronectin type-III domain"]
[1,33658067,33658280,214,32,0.0453404300167643,0.313859108239711,-0.268518678222946,-209.302820552003,"CG","1:33654012:33658348","CGI"]
[1,33680631,33680962,332,126,0.254067877775447,0.127310142561315,0.126757735214132,696.348736481483,"CHH","1:33678877:33680877","CGI_shore"]
[1,33877530,33877653,124,33,0.0729257825065287,0.00542130948756075,0.067504473018968,132.021434110781,"CHH","1:33877010:33879011","CGI_shore"]
[1,34006952,34007042,91,31,0.146483724656794,0.0595564393768824,0.0869272852799116,132.818616527171,"CHH","1:34006836:34008837","CGI_shore"]
[1,34305897,34306005,109,13,0.00647110563040632,0.324609988784709,-0.318138883154303,-87.7494955608273,"CHH","Os01g0807900","utr3","Os01g0807900","Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2) && sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase OS=Arabidopsis thaliana OX=3702 GN=PYD2 PE=1 SV=1 && -"]
[1,34704682,34704782,101,28,0.0460978700026121,0.175276785829233,-0.129178915826621,-149.455197531443,"CHH","1:34702698:34704699","CGI_shore"]
[1,34976686,34976896,211,43,0.103585712856199,0.0386788029002723,0.0649069099559262,183.177567324995,"CHH","1:34976510:34978511","CGI_shore"]
[1,35126775,35126947,173,43,0.164063326086164,0.085266284375305,0.0787970417108587,184.219604714258,"CHH","1:35126196:35128196","CGI_shore"]
[1,35320040,35320256,217,53,0.219809760242659,0.0607507123136616,0.159059047928998,347.144365595672,"CHH","Os01g0825700","promoter","Os01g0825700","Similar to VHS2 protein (Fragment) && sp|O80910|TOL6_ARATH TOM1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=TOL6 PE=1 SV=1 && PF00790:VHS domain|PF03127:GAT domain"]
[1,35661747,35661846,100,6,0.609876963794549,0.93787370139351,-0.327996737598961,-40.8388799242545,"CG","1:35661344:35663344","CGI_shore"]
[1,35867417,35867802,386,125,0.170075990583255,0.0752196138919285,0.0948563766913268,610.206679935626,"CHH","1:35860693:35870051","CGI"]
[1,36349050,36349192,143,11,0.211141819425701,0.0278840681569226,0.183257751268779,53.1561381409888,"CHG","Os01g0846400","exon","Os01g0846400","Conserved hypothetical protein && - && -"]
[1,36393703,36393765,63,19,0.854771347900819,0.62060246187691,0.234168886023909,106.578581824123,"CG","1:36393507:36395507","CGI_shore"]
[1,36508121,36508336,216,60,0.164409216145261,0.0521009238193797,0.112308292325881,334.187885937212,"CHH","1:36508048:36510049","CGI_shore"]
[1,36649515,36649602,88,19,0.0840614098287833,0.167165478459925,-0.0831040686311421,-107.738340388444,"CHH","1:36647171:36652226","CGI"]
[1,36738085,36738301,217,66,0.407672829666809,0.800160360421627,-0.392487530754818,-453.273955168546,"CG","Os01g0853000","promoter","Os01g0853000","Conserved hypothetical protein && - && -"]
[1,36930131,36930190,60,25,0.223733105681228,0.133412201308433,0.0903209043727947,121.37535422124,"CHH","1:36930117:36930750","CGI"]
[1,37074857,37074952,96,33,0.106764702331343,0.00535435940232582,0.101410342929017,158.406628818535,"CHH","1:37073690:37075691","CGI_shore"]
[1,37345123,37345220,98,15,0.0120723067418597,0.167491494519276,-0.155419187777416,-70.3240795304327,"CHH","1:37345035:37347035","CGI_shore"]
[1,37617833,37618125,293,92,0.317211613780833,0.111323308265702,0.205888305515131,606.544818517691,"CHH","Os01g0868200","intron","Os01g0868200","Zinc finger, DHHC-type domain containing protein && sp|Q9SB58|ZDH19_ARATH Protein S-acyltransferase 8 OS=Arabidopsis thaliana OX=3702 GN=PAT08 PE=1 SV=2 && PF01529:DHHC palmitoyltransferase"]
[1,37835593,37835678,86,9,0.671577388685747,0.836961435920854,-0.165384047235108,-42.241298341913,"CG","Os01g0872533","intron","Os01g0872533","Hypothetical protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37924019,37924090,72,10,0.0836800713649505,0.367941553658404,-0.284261482293454,-50.3386704288871,"CG","1:37923233:37925233","CGI_shore"]
[1,38167647,38167802,156,53,0.183500217132994,0.0940238309636094,0.0894763861693843,231.471736264514,"CHH","1:38165506:38182977","CGI"]
[1,38214979,38215043,65,7,0.654403143897361,0.875393435116344,-0.220990291218983,-32.82196796417,"CG","1:38214366:38216366","CGI_shore"]
[1,38670305,38670403,99,12,0.222464546061048,0.0689360603832797,0.153528485677769,86.046144093349,"CHH","1:38669291:38671292","CGI_shore"]
[1,38908668,38908898,231,74,0.280211965706882,0.154815765787673,0.125396199919209,375.453624588424,"CHH","1:38907318:38909318","CGI_shore"]
[1,39381434,39381626,193,52,0.0821420636437621,0.0285178135296469,0.0536242501141152,243.370703787454,"CHH","Os01g0904500","promoter","Os01g0904500","Conserved hypothetical protein && sp|Q8VYF9|SRGT1_ARATH Peptidyl serine alpha-galactosyltransferase OS=Arabidopsis thaliana OX=3702 GN=SERGT1 PE=2 SV=1 && -"]
[1,39626458,39626526,69,23,0.210431811982512,0.108434303855548,0.101997508126965,103.234077832304,"CHH","1:39626268:39628268","CGI_shore"]
[1,39628398,39628510,113,24,0.642590806112486,0.847346178339906,-0.20475537222742,-100.504786169063,"CG","1:39628269:39628632","CGI"]
[1,39634803,39634897,95,23,0.0418575437093656,0.250563118835565,-0.208705575126199,-142.228526808838,"CHH","1:39634813:39636813","CGI_shore"]
[1,39832534,39832705,172,48,0.137913732327525,0.0404670384303265,0.0974466938971985,227.655954607826,"CHH","1:39831012:39833012","CGI_shore"]
[1,39853845,39853924,80,12,0.0368847012164694,0.165097380799471,-0.128212679583001,-61.1034702046821,"CG","Os01g0914700","exon","SPPL3","Peptidase A22B, signal peptide peptidase domain containing protein && sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL3 PE=2 SV=1 && PF04258:Signal peptide peptidase|PF02225:PA domain"]
[1,40343406,40343582,177,36,0.209710858102185,0.0817735586016785,0.127937299500507,171.53200621582,"CHH","Os01g0922800","promoter","MADS BOX GENE 51","MADS-box transcription factor, Short-day flowering promote && sp|Q9XJ61|MAD51_ORYSJ MADS-box transcription factor 51 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS51 PE=2 SV=1 && PF00319:SRF-type transcription factor (DNA-binding and dimerisation domain)"]
[1,40627981,40628061,81,13,0.47884686086986,0.696026885776072,-0.217180024906213,-62.6392637815764,"CG","Os01g0926600","exon","glycosyltransferase gene family 47 member A, glycosyltransferase 47A","Similar to Pectin-glucuronyltransferase && sp|Q8S1X8|GT14_ORYSJ Probable glucuronosyltransferase Os01g0926600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0926600 PE=2 SV=1 && PF03016:Exostosin family"]
[1,40873831,40873946,116,16,0.179490054941785,0.41709631896774,-0.237606264025955,-78.8828276014968,"CG","1:40873402:40875402","CGI_shore"]
[1,41247138,41247260,123,32,0.00924677663688996,0.152746868608126,-0.143500091971236,-218.504164694457,"CHH","Os01g0939600","intron","glycerol-3-phosphate dehydrogenase 2","Similar to Glycerol-3-phosphate dehydrogenase-like protein (Fragment) && sp|Q8S0G4|GPDH1_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0939600 PE=2 SV=1 && PF07479:NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus|PF01210:NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus"]
[1,41308034,41308152,119,30,0.271319112420608,0.136270475921513,0.135048636499095,181.505187173878,"CHH","Os01g0940100","intron","HEXOKINASE-3","Similar to Hexokinase && sp|Q2KNB4|HXK3_ORYSJ Hexokinase-3 OS=Oryza sativa subsp. japonica OX=39947 GN=HXK3 PE=2 SV=1 && -"]
[1,41548910,41549003,94,7,0.0967158064800254,0.577800762023007,-0.481084955542981,-37.6247586902186,"CG","1:41547160:41549160","CGI_shore"]
[1,41692659,41692772,114,17,0.0219784653915458,0.106254507609696,-0.0842760422181503,-77.3710660766655,"CHG","1:41691486:41693487","CGI_shore"]
[1,41851401,41851599,199,45,0.0784638847395566,0.248417400996434,-0.169953516256878,-240.314734127207,"CHH","1:41850107:41852108","CGI_shore"]
[1,42372759,42372909,151,29,0.266976348213885,0.0566184364795647,0.210357911734321,155.172273155702,"CG","1:42372520:42373102","CGI"]
[1,42941015,42941197,183,27,0.289852637648331,0.0745673204456935,0.215285317202638,135.604071234304,"CHH","1:42936844:42941169","CGI"]
[1,43220810,43220979,170,51,0.0829990262598185,0.0218414325954652,0.0611575936643533,240.00667335439,"CHH","Os01g0977901","exon","Os01g0977901","Similar to MDR-like ABC transporter && sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCB11 PE=2 SV=1 && -"]
[10,45431,45574,144,54,0.295873330518083,0.128409599623366,0.167463730894717,281.53727892454,"CHH","10:45446:47447","CGI_shore"]
[10,221837,222017,181,56,0.231507132417135,0.0697012580641246,0.16180587435301,270.09592013634,"CHH","10:220671:222672","CGI_shore"]
[10,439208,439349,142,38,0.0202240813990593,0.278151996199978,-0.257927914800919,-260.746592277551,"CHH","Os10g0105933","promoter","Os10g0105933","Similar to transferase family protein && sp|Q7G4G7|AT1_ORYSJ Acyl transferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=AT1 PE=2 SV=1 && -"]
[10,835482,835677,196,47,0.381231255965335,0.05582770602871,0.325403549936625,284.165934905099,"CHH","10:834755:836755","CGI_shore"]
[10,855887,856980,1094,23,0.131510177333882,0.0310912240560934,0.100418953277789,102.725339916854,"CHH","10:856132:858133","CGI_shore"]
[10,1053206,1053678,473,103,0.236692269009695,0.48288020380275,-0.246187934793055,-869.56496937848,"CG","10:1049829:1060023","CGI"]
[10,1059498,1059628,131,53,0.339458906861081,0.536817840192758,-0.197358933331677,-250.155966874475,"CG","10:1059030:1061030","CGI_shore"]
[10,1071367,1071450,84,16,0.0356165720474811,0.122219507430629,-0.0866029353831479,-103.169728542218,"CHH","Target=(CTCGG)n:2-134;Class=Simple_repeat","repeat"]
[10,1113924,1114004,81,33,0.123795523192108,0.0304966130349689,0.0932989101571393,185.361562932058,"CHH","Os10g0117400","promoter","Os10g0117400","Hypothetical conserved gene && - && -"]
[10,1307332,1307493,162,72,0.0224819072985938,0.0964132973990618,-0.073931390100468,-380.824210673631,"CHH","Os10g0120300","promoter","Os10g0120300","Similar to Leucine Rich Repeat family protein, expressed && sp|Q6JN47|EIX1_SOLLC Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2 && PF08263:Leucine rich repeat N-terminal domain|PF13855:Leucine rich repeat"]
[10,1519220,1519569,350,20,0.218813853162351,0.0442726485317637,0.174541204630588,100.480263671638,"CHH","10:1519547:1521548","CGI_shore"]
[10,1591656,1591737,82,31,0.21625730719956,0.065636400273263,0.150620906926297,152.724600350599,"CHH","Os10g0124900","exon","Os10g0124900","Conserved hypothetical protein && - && -"]
[10,1679850,1680069,220,59,0.203104005990798,0.076164267348531,0.126939738642267,305.426713573029,"CHH","10:1678465:1680466","CGI_shore"]
[10,1815758,1815879,122,35,0.0706571031966601,0.0215724260319837,0.0490846771646765,147.775566083748,"CHH","10:1815759:1817759","CGI_shore"]
[10,1828320,1828569,250,70,0.199502637327512,0.0796390172719753,0.119863620055537,434.459173930287,"CHH","10:1826686:1828687","CGI_shore"]
[10,1867979,1868138,160,49,0.102864921572039,0.0418250829139978,0.0610398386580409,233.500622123294,"CHH","10:1866479:1868479","CGI_shore"]
[10,1953336,1953477,142,50,0.14436217641231,0.0286724385231201,0.115689737889189,247.06098879026,"CHH","Os10g0131800","intron","Os10g0131800","Similar to NBS-LRR class disease resistance protein && sp|P0DO07|PIK2_ORYSJ Disease resistance protein Pik-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-2 PE=3 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[10,2011092,2011212,121,35,0.209327923999475,0.0491095071765605,0.160218416822915,133.561508003535,"CG","Os10g0132400","exon","Os10g0132400","Conserved hypothetical protein && - && -"]
[10,2048976,2049098,123,19,0.289130161445716,0.636539791949587,-0.347409630503871,-115.967327278771,"CHG","10:2048779:2049165","CGI"]
[10,2290657,2290731,75,14,6.88064776187872E-3,0.0782672067264884,-0.0713865589646097,-79.8974538380885,"CHH","Os10g0136950","promoter","Os10g0136950","Hypothetical protein && - && PF12937:F-box-like"]
[10,2311700,2311853,154,44,0.198768080718285,0.0992870028172045,0.0994810779010804,245.86334084875,"CHH","Os10g0137100","promoter","Os10g0137100","Conserved hypothetical protein && - && -"]
[10,2386367,2386422,56,15,0.0709131986048634,0.030136289848756,0.0407769087561075,47.9199264439093,"CG","Os10g0138600","exon","F-box protein 529, endosperm-specific gene 132","Cyclin-like F-box domain containing protein && - && -"]
[10,2445104,2445203,100,42,0.196485175795757,0.0584287463583956,0.138056429437361,228.07775136872,"CHH","10:2443702:2445702","CGI_shore"]
[10,2493051,2493118,68,21,0.305851708920335,0.174935090809651,0.130916618110684,104.033613518581,"CHH","Os10g0140300","intron","GDSL ESTERASE/LIPASE PROTEIN 102","Esterase, SGNH hydrolase-type domain containing protein && sp|Q9FHW9|GDL90_ARATH GDSL esterase/lipase At5g42170 OS=Arabidopsis thaliana OX=3702 GN=At5g42170/At5g42160 PE=3 SV=2 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[10,2508635,2508831,197,53,0.197784807302912,0.0801285842133897,0.117656223089522,279.935192428476,"CHH","10:2508043:2510044","CGI_shore"]
[10,2850626,2850683,58,11,0.0121938470454155,0.0802522795278968,-0.0680584324824813,-78.91617599883,"CHH","Os10g0147400","intron","like aux1-4, related to AUX1-4, auxin transporter 4","Similar to Auxin influx carrier protein && sp|Q7XGU4|LAX13_ORYSJ Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0147400 PE=2 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[10,3002917,3002975,59,24,0.258164103863758,0.150910302160827,0.107253801702931,118.922005956519,"CHH","10:3001997:3003997","CGI_shore"]
[10,3142734,3142822,89,31,0.149892880652071,0.0606304087815638,0.089262471870507,133.094069386302,"CHH","10:3142314:3144314","CGI_shore"]
[10,3145515,3145596,82,16,0.850193481047349,0.526525796788035,0.323667684259314,75.8091358223423,"CG","10:3144733:3146734","CGI_shore"]
[10,3577270,3577442,173,57,0.281427950377245,0.0855434913768036,0.195884459000442,383.894461235007,"CG","10:3576797:3578797","CGI_shore"]
[10,3630559,3630693,135,42,0.149154990182791,0.0441614227413602,0.104993567441431,196.602695130433,"CHH","10:3630014:3632014","CGI_shore"]
[10,3852195,3852465,271,84,0.335820484642243,0.218940392104575,0.116880092537668,395.31550398411,"CHH","10:3851571:3853572","CGI_shore"]
[10,3891084,3891213,130,28,0.177615259534639,0.0710404259889386,0.106574833545701,137.066778711501,"CHH","10:3889457:3891457","CGI_shore"]
[10,3955037,3956478,1442,57,0.0156547764047357,0.0487226937713422,-0.0330679173666064,-255.554730885959,"CHH","10:3949633:3958680","CGI"]
[10,4047402,4047573,172,44,0.215921437787561,0.0483770104453743,0.167544427342186,302.673977853412,"CHH","10:4045890:4047891","CGI_shore"]
[10,4198331,4198436,106,29,0.0812565256214536,0.0187024975151314,0.0625540281063222,145.647421539068,"CHH","10:4197821:4199822","CGI_shore"]
[10,4210140,4210215,76,33,0.404311332603173,0.257774879028526,0.146536453574647,150.646414721367,"CHH","Os10g0162854","promoter","Os10g0162854","Similar to OSIGBa0106P14.3 protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[10,4252548,4252763,216,89,0.00487253794122319,0.0536203343905303,-0.0487477964493071,-510.417273087448,"CHH","10:4242886:4252564","CGI"]
[10,4253978,4254053,76,20,0.319930150811919,0.160602276844499,0.15932787396742,109.011178657631,"CHH","10:4252457:4254457","CGI_shore"]
[10,4327876,4327927,52,16,0.0810160997781026,0.281254023433691,-0.200237923655588,-71.355946364307,"CHH","Os10g0163290","intron","ABC TRANSPORTER G FAMILY MEMBER 24","Similar to ABC-2 type transporter family protein && sp|H9BZ66|ABCG1_PETHY ABC transporter G family member 1 OS=Petunia hybrida OX=4102 GN=ABCG1 PE=2 SV=1 && PF00005:ABC transporter"]
[10,4624301,4624548,248,96,0.163803407737274,0.0257911221833722,0.138012285553901,545.296922874144,"CHH","10:4623975:4625976","CGI_shore"]
[10,4781306,4781434,129,41,0.119999728631486,0.0355448104089114,0.0844549182225741,211.879953764075,"CHH","10:4780397:4781467","CGI"]
[10,4934429,4934488,60,24,0.0986221982920178,0.0406374577785094,0.0579847405135084,96.6746521711287,"CHH","10:4930334:4944667","CGI"]
[10,5381845,5382012,168,53,0.128807031361007,0.0572232315585875,0.0715837998024198,263.438043182552,"CHH","10:5380127:5382127","CGI_shore"]
[10,5423609,5423798,190,31,0.349455401039741,0.123617681246492,0.225837719793249,146.213834156849,"CHG","10:5422179:5424179","CGI_shore"]
[10,5551826,5551962,137,46,0.231404376978751,0.0825404695246336,0.148863907454118,252.881415669177,"CHH","10:5551556:5552450","CGI"]
[10,5671196,5671396,201,72,0.066522775535591,0.00346617740620702,0.063056598129384,432.805786376074,"CHH","10:5671157:5673158","CGI_shore"]
[10,5776357,5776490,134,53,0.171708460392921,0.0967577201284483,0.0749507402644722,232.488240773913,"CHH","10:5775961:5777961","CGI_shore"]
[10,5839956,5840024,69,24,0.156869454608442,0.0869069888198772,0.0699624657885646,110.620282719618,"CHH","10:5839242:5841242","CGI_shore"]
[10,5967484,5967746,263,104,0.118608416542021,0.024482795000596,0.094125621541425,586.276179122825,"CHH","10:5967122:5969123","CGI_shore"]
[10,6058531,6058634,104,29,0.147843583513756,0.0176667738749487,0.130176809638808,136.103310429627,"CHH","10:6054806:6069381","CGI"]
[10,6093624,6093800,177,56,0.289127886401273,0.172673955392009,0.116453931009264,276.951645385152,"CHH","10:6092803:6093718","CGI"]
[10,6126669,6126764,96,11,0.325301769127218,0.691426683037185,-0.366124913909967,-49.7713565038147,"CHG","10:6125955:6127956","CGI_shore"]
[10,6372391,6372445,55,19,0.33375870788514,0.238544864613957,0.0952138432711829,85.5670840952726,"CHH","10:6372281:6372550","CGI"]
[10,6398742,6398826,85,33,0.0982737073009922,0.0314721454117214,0.0668015618892709,147.194719357976,"CHH","10:6398714:6400714","CGI_shore"]
[10,6498372,6498422,51,16,0.0982867525245874,0.0332998963987245,0.0649868561258629,77.1794306192629,"CHH","Os10g0193500","intron","OsSTA239","Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein && - && PF14368:Probable lipid transfer"]
[10,6579711,6579767,57,15,0.109904822715567,0.0411283793265626,0.0687764433890041,73.5564109177272,"CHH","Os10g0195050","promoter","Os10g0195050","Hypothetical protein && sp|Q9SX83|DTX33_ARATH Protein DETOXIFICATION 33 OS=Arabidopsis thaliana OX=3702 GN=DTX33 PE=2 SV=1 && -"]
[10,6899533,6899600,68,16,0.457915236961284,0.304783426852245,0.153131810109039,69.4469178644513,"CHH","Os10g0198900","intron","endosperm-specific gene 134","Drug/metabolite transporter domain containing protein && sp|Q6NMB7|WTR7_ARATH WAT1-related protein At1g43650 OS=Arabidopsis thaliana OX=3702 GN=At1g43650 PE=2 SV=1 && PF00892:EamA-like transporter family"]
[10,6937916,6938041,126,52,0.072115614896652,0.0275761227268747,0.0445394921697773,240.128040364985,"CHH","10:6937449:6939449","CGI_shore"]
[10,7140645,7140806,162,54,0.111927151528197,0.0405077554748189,0.0714193960533785,198.681570284129,"CHH","10:7035079:7215631","CGI"]
[10,7358656,7358768,113,18,0.198533241379992,0.0211033804245765,0.177429860955416,92.9222814398251,"CHH","10:7358703:7359689","CGI"]
[10,7635296,7635369,74,17,0.0570994607248435,0.00376916389504276,0.0533302968298008,78.9343911247741,"CHH","10:7633389:7635389","CGI_shore"]
[10,7691468,7691809,342,99,0.168681660447412,0.0838385231611752,0.0848431372862364,459.222531527655,"CHH","10:7690003:7692003","CGI_shore"]
[10,7745408,7745549,142,41,0.32460468929972,0.100846798568665,0.223757890731055,182.459246147829,"CHH","10:7744218:7746218","CGI_shore"]
[10,7860292,7860369,78,19,0.293468795924947,0.620914243473994,-0.327445447549047,-95.2567337132238,"CHG","10:7858495:7860496","CGI_shore"]
[10,7997034,7997141,108,23,0.107860672875948,0.0314379055747197,0.0764227673012286,101.890436464157,"CHH","Os10g0213800","promoter","Os10g0213800","Hypothetical conserved gene && - && -"]
[10,8306186,8306359,174,59,0.146818250745417,0.0724757004462959,0.0743425502991214,273.5925301013,"CHH","Os10g0316400","intron","Os10g0316400","Conserved hypothetical protein && - && -"]
[10,8572124,8572372,249,51,0.463615691964231,0.218998625724547,0.244617066239684,314.104753140418,"CG","10:8572346:8574347","CGI_shore"]
[10,8659781,8659971,191,68,0.40723216568419,0.240463699781261,0.166768465902929,338.947796934333,"CHH","Os10g0320001","promoter","Os10g0320001","Hypothetical gene && - && -"]
[10,8893047,8893137,91,23,0.127162789171083,0.0392704277488776,0.087892361422205,151.18829914668,"CHH","10:8892830:8894830","CGI_shore"]
[10,8894850,8895033,184,66,0.197330240470055,0.0500269573813785,0.147303283088677,410.72837424061,"CHH","Os10g0323000","intron","Os10g0323000","Conserved hypothetical protein && sp|Q7XFU9|Y1030_ORYSJ B3 domain-containing protein Os10g0323000 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0323000 PE=2 SV=1 && -"]
[10,9171225,9171402,178,61,0.137020678881522,0.0574369552873423,0.0795837235941796,310.983322748479,"CHH","10:9171260:9173261","CGI_shore"]
[10,9252167,9252257,91,32,0.0640357854458711,0.0132555996149366,0.0507801858309344,142.53062421179,"CHH","10:9250291:9252292","CGI_shore"]
[10,9378634,9378734,101,20,0.494206476754245,0.28713692045334,0.207069556300905,106.759257034195,"CG","10:9376986:9378668","CGI"]
[10,9590855,9591035,181,58,0.0586697509523757,0.0106260287647386,0.0480437221876371,268.49401399844203,"CHH","10:9590224:9592225","CGI_shore"]
[10,9804426,9804594,169,55,0.185273136399428,0.0564859994670587,0.128787136932369,297.998988342557,"CHH","10:9803169:9805169","CGI_shore"]
[10,9894652,9895001,350,96,0.195109990968057,0.0968279206802181,0.0982820702878389,456.271344520008,"CHH","10:9893893:9895893","CGI_shore"]
[10,10160989,10161055,67,15,0.213861258032563,0.117910245716582,0.0959510123159807,70.6690596784324,"CHH","Os10g0343000","promoter","Os10g0343000","Conserved hypothetical protein && - && -"]
[10,10239650,10239812,163,42,0.0875038285712392,0.0264181677919474,0.0610856607792918,178.306428179243,"CHH","10:10239442:10241442","CGI_shore"]
[10,10575792,10576042,251,56,0.219950683488875,0.0310861604316971,0.188864523057177,380.936244522455,"CHH","10:10575574:10577575","CGI_shore"]
[10,10630010,10630214,205,46,0.824884670757643,0.609329048097164,0.21555562266048,255.278366981948,"CG","10:10629119:10631120","CGI_shore"]
[10,10769797,10770001,205,77,0.20959940157516,0.0910162939189762,0.118583107656184,465.121636179886,"CHH","Os10g0352500","promoter","Os10g0352500","Similar to cDNA clone:J013022N21, full insert sequence && - && -"]
[10,10998755,10999030,276,66,0.263380364508701,0.484456118995169,-0.221075754486469,-309.198399722976,"CG","10:10996684:10999936","CGI"]
[10,11357078,11357148,71,22,0.148318762069259,0.0275096029201073,0.120809159149152,140.138416401801,"CHH","10:11356507:11358508","CGI_shore"]
[10,11565741,11565952,212,70,0.13869484239615,0.0622925347316513,0.0764023076644985,333.758671514604,"CHH","10:11564050:11566050","CGI_shore"]
[10,11717855,11717918,64,20,0.711272558289525,0.861924717427402,-0.150652159137877,-77.0530315620683,"CG","10:11717526:11718316","CGI"]
[10,11724723,11724897,175,46,0.316694599686284,0.181341010159211,0.135353589527073,222.156778319744,"CHH","Os10g0371000","intron","Os10g0371000","Similar to Pollen proteins Ole e I family protein, expressed && sp|P33050|PSC13_MAIZE Pollen-specific protein C13 OS=Zea mays OX=4577 GN=MGS1 PE=2 SV=1 && PF01190:Pollen proteins Ole e I like"]
[10,11862006,11862134,129,31,0.0885409213727753,0.013021215995741,0.0755197053770343,169.77886036446,"CHH","10:11861770:11863770","CGI_shore"]
[10,11878473,11878540,68,29,0.358132042580145,0.244817872029113,0.113314170551032,129.291383041947,"CHH","10:11877376:11879377","CGI_shore"]
[10,11923327,11923536,210,61,0.162065960662197,0.0285412907032301,0.133524669958967,428.121932433168,"CHH","10:11921969:11923969","CGI_shore"]
[10,12039635,12039885,251,52,0.315897081860456,0.147403971846546,0.16849311001391,289.943172797759,"CHH","Os10g0377300","promoter","HOMEOBOX GENE 8","Similar to Homeobox-leucine zipper protein HOX8 && sp|Q338Z7|HOX8_ORYSJ Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX8 PE=2 SV=1 && PF02183:Homeobox associated leucine zipper|PF00046:Homeodomain"]
[10,12134559,12134621,63,20,0.162479206660414,0.0849499638650233,0.0775292427953908,91.8232085650219,"CHH","10:12133166:12135167","CGI_shore"]
[10,12421077,12421196,120,19,0.583792092016569,0.258718838251573,0.325073253764995,88.0590760710649,"CHG","10:12418466:12422066","CGI"]
[10,12893295,12893611,317,84,0.366809368707898,0.160832483161767,0.205976885546131,556.59260723796,"CHH","Os10g0389300","exon","RED CHLOROPHYLL CATABOLITE REDUCTASE 2","Similar to Red chlorophyll catabolite reductase (Fragment) && sp|Q9MTQ6|RCCR_HORVU Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare OX=4513 GN=rccR PE=1 SV=1 && -"]
[10,12896188,12896390,203,97,0.143044176631895,0.0326083783199836,0.110435798311911,601.781177607369,"CHH","10:12894404:12896404","CGI_shore"]
[10,12991713,12991823,111,17,0.450068657183348,0.301629826835004,0.148438830348344,73.4720092175636,"CHH","10:12990039:12992040","CGI_shore"]
[10,13051147,13051286,140,35,0.210650300059358,0.0965940348876338,0.114056265171725,172.19296904208,"CHH","10:13050593:13052594","CGI_shore"]
[10,13119451,13119502,52,18,0.109182144726809,0.0179596843735185,0.0912224603532907,88.8491474870523,"CHH","10:13119326:13121326","CGI_shore"]
[10,13141083,13141367,285,105,0.203861268374483,0.0834825385615181,0.120378729812964,510.526490443689,"CHH","10:13140354:13142354","CGI_shore"]
[10,13482198,13482304,107,35,0.165341545902292,0.0734510351230995,0.091890510779193,160.327971549029,"CHH","10:13481914:13483915","CGI_shore"]
[10,13610293,13610405,113,24,0.148822136973725,0.0412569683159408,0.107565168657785,141.667518777178,"CHH","10:13609051:13611051","CGI_shore"]
[10,13906581,13906641,61,10,0.0380699210848642,0.139788216881077,-0.101718295796212,-40.6708917086911,"CG","Os10g0406600","exon","Os10g0406600","Complex 1 LYR protein family protein && - && -"]
[10,13907404,13907533,130,37,0.167239356145039,0.0322513429334894,0.134988013211549,198.602005691799,"CHH","10:13905592:13907593","CGI_shore"]
[10,13979032,13979123,92,19,0.42380751488973,0.248397288119659,0.175410226770071,101.12731450459,"CG","10:13979022:13979589","CGI"]
[10,14049859,14049912,54,5,0.37888069148431,0.615590251027655,-0.236709559543345,-22.5452237992083,"CHG","10:14049616:14049950","CGI"]
[10,14113687,14113772,86,28,0.184213816645915,0.105982968291962,0.0782308483539527,114.628703858736,"CHH","10:14112322:14114322","CGI_shore"]
[10,14484624,14484681,58,26,0.107146657626227,0.018765042804668,0.0883816148215591,154.747172505183,"CHH","10:14483980:14485980","CGI_shore"]
[10,14620618,14620812,195,57,0.193246355538506,0.0480550917134703,0.145191263825036,431.861953260906,"CHH","10:14619434:14621434","CGI_shore"]
[10,14694340,14694513,174,28,0.234232388204693,0.387469031717164,-0.153236643512471,-147.668688847917,"CHG","10:14694058:14696059","CGI_shore"]
[10,14975125,14975392,268,94,0.206325375805138,0.0750402434354421,0.131285132369696,532.320387229499,"CHH","Os10g0422700","exon","Os10g0422700","Conserved hypothetical protein && - && -"]
[10,15170940,15171142,203,39,0.296563777260231,0.0844453011321899,0.212118476128041,228.647206744938,"CHH","Os10g0426600","promoter","MATH-BTB protein 29, MDC protein with a BTB domain 29, MDC protein having BTB domain 29","Conserved hypothetical protein && sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 && PF00651:BTB/POZ domain"]
[10,15207160,15207322,163,44,0.413429110345764,0.242593636033205,0.170835474312558,224.96905284212,"CHH","10:15205074:15214753","CGI"]
[10,15327067,15327205,139,29,0.259312165977057,0.10572299534638,0.153589170630677,122.794648664812,"CG","Os10g0430600","exon","MATH-BTB protein 46, MDC protein with a BTB domain 46, MDC protein having BTB domain 46","Aminotransferase, class-II, pyridoxal-phosphate binding site domain containing protein && - && -"]
[10,15332587,15332830,244,38,0.196326319885051,0.444426639594655,-0.248100319709604,-230.762186370959,"CG","Os10g0430700","intron","MATH-BTB protein 46, MDC protein with a BTB domain 46, MDC protein having BTB domain 46","Conserved hypothetical protein && - && -"]
[10,15406635,15406783,149,30,0.202283799638619,0.0934261076337223,0.108857692004896,141.882799046445,"CHH","Os10g0431900","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 300","Serine/threonine protein kinase-related domain containing protein && sp|Q9FM85|PBL16_ARATH Probable serine/threonine-protein kinase PBL16 OS=Arabidopsis thaliana OX=3702 GN=PBL16 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[10,15651392,15651456,65,29,0.182932852740028,0.0382063900705108,0.144726462669517,159.936506498624,"CHH","10:15651271:15653272","CGI_shore"]
[10,15794533,15794703,171,55,0.180111572389884,0.084763041634282,0.0953485307556016,270.188178351356,"CHH","10:15793012:15795013","CGI_shore"]
[10,15900994,15901247,254,47,0.316367573366624,0.169459234221939,0.146908339144685,250.399159463919,"CHH","10:15900760:15902761","CGI_shore"]
[10,15997084,15997231,148,51,0.582008141043508,0.435819647270161,0.146188493773347,232.310098335541,"CHH","10:15995537:15997537","CGI_shore"]
[10,16078913,16079130,218,49,0.211813233525911,0.0934296941698627,0.118383539356049,220.74753496655,"CHG","10:16077651:16079959","CGI"]
[10,16241872,16242110,239,86,0.108136554247423,0.0415736389227902,0.0665629153246329,418.741649152584,"CHH","10:16234969:16251040","CGI"]
[10,16361379,16361585,207,59,0.120556378645243,0.0205967474746876,0.0999596311705552,348.923578811103,"CHH","10:16359703:16361703","CGI_shore"]
[10,16484601,16484733,133,16,0.283084649420701,0.531669987286468,-0.248585337865767,-85.4182312389113,"CHG","10:16484386:16484954","CGI"]
[10,16675085,16675259,175,63,0.120384175842174,0.0373184004533128,0.0830657753888608,330.794715925814,"CHH","Os10g0456200","promoter","intracellular Ras-group-related LRR protein 8","Similar to small GTP-binding protein domain && sp|Q7XDQ7|PIRL8_ORYSJ Plant intracellular Ras-group-related LRR protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=IRL8 PE=2 SV=1 && -"]
[10,16874768,16874848,81,24,0.0485793901529675,0.0100427834003733,0.0385366067525942,155.888647449941,"CHH","10:16873318:16875319","CGI_shore"]
[10,17176770,17176904,135,40,0.250885503897996,0.137495982047734,0.113389521850262,201.115255626909,"CHH","10:17170984:17182944","CGI"]
[10,17317223,17317405,183,25,0.629281959744919,0.293270982079954,0.336010977664965,137.505466406672,"CHG","10:17315257:17317258","CGI_shore"]
[10,17329355,17329641,287,79,0.185030774928786,0.0542598423704073,0.130770932558379,400.943783740009,"CHH","10:17328518:17330518","CGI_shore"]
[10,17389458,17389606,149,30,0.129381273360162,0.372883463287287,-0.243502189927125,-167.652342312842,"CHG","10:17388736:17390737","CGI_shore"]
[10,17389473,17389605,133,34,0.245492085271421,0.519630853788616,-0.274138768517195,-212.749323251403,"CG","Os10g0470100","utr3","Os10g0470100","Conserved hypothetical protein && - && -"]
[10,17601379,17601556,178,29,0.016578189420353,0.100699164650308,-0.084120975229955,-133.493100694438,"CHG","Os10g0473800","exon","Os10g0473800","Similar to protoporphyrinogen IX oxidase (plastidic)1 && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17643553,17643679,127,21,0.180309128916459,0.052314583632518,0.127994545283941,122.378183871491,"CHH","10:17642030:17644030","CGI_shore"]
[10,17873446,17873557,112,25,0.304183478779419,0.569786709281954,-0.265603230502535,-115.333627000739,"CG","Os10g0477900","exon","Os10g0477900","Similar to NAD dependent epimerase/dehydratase family protein, expressed && sp|D7U6G6|ANRPN_VITVI Anthocyanidin reductase ((2S)-flavan-3-ol-forming) OS=Vitis vinifera OX=29760 GN=ANR PE=3 SV=1 && PF01073:3-beta hydroxysteroid dehydrogenase/isomerase family"]
[10,18063007,18063165,159,25,0.570537157529315,0.784877498923908,-0.214340341394593,-122.169857097916,"CG","10:18062676:18064677","CGI_shore"]
[10,18127393,18127637,245,69,0.353364857151159,0.196974492219731,0.156390364931428,374.443394067311,"CHH","10:18125766:18127766","CGI_shore"]
[10,18382486,18382593,108,36,0.0647849673027786,0.215793519882327,-0.151008552579549,-150.535736672586,"CG","10:18382304:18387276","CGI"]
[10,18443215,18443335,121,36,0.0585613079736636,0.165105110812708,-0.106543802839044,-185.920933263658,"CHH","Os10g0487400","promoter","Os10g0487400","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 && PF13639:Ring finger domain|PF14369:zinc-ribbon"]
[10,18464789,18464848,60,18,0.09307529040604,0.00743299041475914,0.0856422999912808,89.4617724538689,"CHH","10:18464658:18466658","CGI_shore"]
[10,18651437,18651563,127,47,0.128842202662179,0.0517820217958312,0.0770601808663478,232.419493321662,"CHH","10:18651192:18653192","CGI_shore"]
[10,18783778,18783934,157,52,0.359152654259001,0.2327245625313,0.126428091727701,239.840096056608,"CHH","10:18782935:18784935","CGI_shore"]
[10,18980217,18980407,191,34,0.317609017128614,0.0559465480377712,0.261662469090843,232.033126481252,"CHH","Os10g0497750","promoter","Os10g0497750","Hypothetical protein && sp|Q8W3E8|COBL4_ORYSJ COBRA-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L9 PE=2 SV=1 && -"]
[10,19198371,19198460,90,23,0.0828332105961466,0.00708278288859175,0.0757504277075548,152.880276603352,"CHH","10:19197170:19199170","CGI_shore"]
[10,19566845,19566957,113,33,0.380742915435393,0.222718941092663,0.15802397434273,175.267093146398,"CHH","Os10g0509200","intron","Os10g0509200","Similar to plastid-lipid associated protein PAP / fibrillin family protein && sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP10 PE=1 SV=1 && PF04755:PAP_fibrillin"]
[10,19686241,19686434,194,41,0.282010719349338,0.0834674404944938,0.198543278854844,208.623973301664,"CHH","10:19686376:19688117","CGI"]
[10,19824998,19825224,227,78,0.0937282620653861,0.291182674138094,-0.197454412072707,-501.107388463348,"CG","Os10g0514300","promoter","Os10g0514300","Similar to Transposon protein && sp|Q9SRQ1|C89A9_ARATH Cytochrome P450 89A9 OS=Arabidopsis thaliana OX=3702 GN=CYP89A9 PE=2 SV=1 && -"]
[10,19987169,19987283,115,40,0.0955553777526451,0.00803914641479668,0.0875162313378484,205.936042449858,"CHH","Os10g0517050","exon","Os10g0517050","Hypothetical conserved gene && - && -"]
[10,20165715,20165915,201,55,0.261114459461073,0.144361519601621,0.116752939859452,268.370015521072,"CHH","10:20158558:20166775","CGI"]
[10,20459281,20459437,157,32,0.42761298880104,0.769381836891081,-0.34176884809004,-210.297289240262,"CG","10:20457384:20459385","CGI_shore"]
[10,20816945,20817042,98,38,0.214354896497952,0.0833978609891004,0.130957035508851,176.143037156776,"CHH","10:20812382:20820357","CGI"]
[10,20852639,20852718,80,20,0.157449731783537,0.0590285122300044,0.0984212195535322,96.5348298682345,"CHH","Os10g0536000","promoter","SUMO-conjugating enzyme 1, Ubiquitin-conjugating enzyme 1","Similar to SUMO E2 conjugating enzyme SCE1 && sp|Q42551|SCE1_ARATH SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana OX=3702 GN=SCE1 PE=1 SV=1 && PF00179:Ubiquitin-conjugating enzyme"]
[10,21039219,21039383,165,43,0.119793886520393,6.03474081951053E-3,0.113759145700882,354.238668371544,"CHH","10:21039096:21041096","CGI_shore"]
[10,21116609,21116681,73,21,0.435096767848065,0.313577552981523,0.121519214866542,98.2071366969973,"CHH","10:21116288:21118288","CGI_shore"]
[10,21160767,21160938,172,59,0.142109072216163,0.043497880535546,0.0986111916806174,285.009196663962,"CHH","10:21160804:21162804","CGI_shore"]
[10,21374029,21374141,113,17,0.301960481966364,0.0124044952628798,0.289555986703484,90.7003207501658,"CHH","10:21372228:21374228","CGI_shore"]
[10,21575460,21575646,187,57,0.0787916213332101,0.0225241063063772,0.0562675150268329,300.933886820077,"CHH","Os10g0550100","promoter","Mediator 12_2","Conserved hypothetical protein && sp|H3K2Y6|MED12_ARATH Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana OX=3702 GN=MED12 PE=1 SV=1 && -"]
[10,21835442,21835531,90,25,0.543325046796437,0.437821612524547,0.10550343427189,99.6991307635547,"CHH","10:21834245:21836245","CGI_shore"]
[10,22120170,22120393,224,68,0.204931415641503,0.0717153712917172,0.133216044349786,354.450364259937,"CHH","Os10g0561100","exon","Os10g0561100","Similar to Quinone oxidoreductase && sp|Q59I44|CAA43_BURSP 2-haloacrylate reductase OS=Burkholderia sp. OX=36773 GN=caa43 PE=1 SV=1 && PF00107:Zinc-binding dehydrogenase|PF08240:Alcohol dehydrogenase GroES-like domain"]
[10,22120170,22120393,224,68,0.204931415641503,0.0717153712917172,0.133216044349786,354.450364259937,"CHH","10:22120092:22120326","CGI"]
[10,23109134,23109193,60,17,0.0360340169401994,0.141344725044608,-0.105310708104408,-89.8420133549965,"CHH","10:23108246:23110247","CGI_shore"]
[11,87826,88024,199,40,0.185557301146142,0.0277560478197928,0.15780125332635,217.723124055817,"CHH","11:85932:87933","CGI_shore"]
[11,169045,169118,74,13,0.0585091921452297,0.175098483193795,-0.116589291048566,-52.0821332019506,"CHG","Os11g0104150","utr5","Os11g0104150","Conserved hypothetical protein && - && -"]
[11,214191,214579,389,116,0.283503416439668,0.142569931952061,0.140933484487607,618.073439138788,"CHH","11:212846:214846","CGI_shore"]
[11,433389,433443,55,10,0.864117105159069,0.47183777595212,0.392279329206949,48.4845128990767,"CG","Os11g0109400","promoter","Os11g0109400","Cation/H+ exchanger domain containing protein && sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana OX=3702 GN=CHX15 PE=2 SV=1 && PF00999:Sodium/hydrogen exchanger family"]
[11,811860,811940,81,20,0.433306741211139,0.283648091537248,0.14965864967389,88.9204568138071,"CHH","11:810640:812641","CGI_shore"]
[11,1149586,1149651,66,31,0.525281021298753,0.387814740028091,0.137466281270662,129.306625864324,"CG","11:1148925:1150699","CGI"]
[11,1220116,1220182,67,16,0.1407074122803,0.0325210494140365,0.108186362866264,80.5833279676573,"CHH","11:1219508:1221509","CGI_shore"]
[11,1749402,1750682,1281,24,0.348492631469069,0.106118905423286,0.242373726045782,126.916003120171,"CHH","11:1747446:1749446","CGI_shore"]
[11,2209557,2209713,157,61,0.260767716172032,0.0943879138314652,0.166379802340567,363.121112427588,"CHH","Os11g0147800","promoter","Os11g0147800","Similar to Wali7 protein (Fragment) && sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum OX=4097 GN=TSJT1 PE=2 SV=1 && PF12481:Aluminium induced protein"]
[11,2351303,2351557,255,40,0.0366642014626233,0.186047638759916,-0.149383437297293,-276.817908903947,"CG","Os11g0150632","utr5","Os11g0150632","Similar to H0101F08.9 protein && sp|Q75L84|GT43A_ORYSJ Probable beta-1,4-xylosyltransferase GT43A OS=Oryza sativa subsp. japonica OX=39947 GN=GT43A PE=2 SV=1 && -"]
[11,2359682,2359756,75,24,0.0220932424577983,0.116176337541028,-0.0940830950832295,-133.606362350558,"CHH","11:2357948:2359948","CGI_shore"]
[11,2642143,2642204,62,17,0.198206467409133,0.0449059403065668,0.153300527102567,96.198709873763,"CHH","11:2641769:2643770","CGI_shore"]
[11,2759042,2759126,85,15,0.0934017887663894,0.0225875114537176,0.0708142773126718,103.051185123624,"CHH","11:2758989:2760990","CGI_shore"]
[11,2924751,2924837,87,24,0.0790725818759234,0.0124263947898306,0.0666461870860928,107.004211231033,"CHH","11:2923019:2925020","CGI_shore"]
[11,2977840,2977940,101,16,0.173942013391615,0.446035458284947,-0.272093444893332,-74.7647493727305,"CHG","Os11g0161100","promoter","Os11g0161100","NB-ARC domain containing protein && - && -"]
[11,3151322,3151413,92,15,0.800653810286851,0.851819090294413,-0.0511652800075616,-47.8138683316847,"CG","11:3151290:3153290","CGI_shore"]
[11,3371437,3371676,240,66,0.322012921020973,0.163648069535565,0.158364851485408,377.105261540013,"CHH","11:3370769:3372770","CGI_shore"]
[11,3499104,3499161,58,25,0.126293925404436,0.0494264417780929,0.0768674836263433,114.19822477824,"CG","Os11g0171601","exon","Os11g0171601","Hypothetical gene && sp|Q53P85|CDPKO_ORYSJ Calcium-dependent protein kinase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK24 PE=1 SV=1 && PF00069:Protein kinase domain"]
[11,3737483,3737611,129,39,0.0960365741021389,0.025392392254474,0.0706441818476648,175.603338301744,"CHH","Os11g0175300","utr3","Os11g0175300","Domain of unknown function DUF1618 domain containing protein && - && -"]
[11,4126041,4126155,115,33,0.125674241901177,0.0117503752072255,0.113923866693951,230.147187220923,"CHH","11:4124225:4126225","CGI_shore"]
[11,4141622,4141806,185,51,0.155842296432625,0.0516612960693805,0.104181000363244,261.466934556313,"CHH","Os11g0182400","promoter","F-box protein 571","WD40/YVTN repeat-like domain containing protein && sp|Q9SV01|FBW4_ARATH F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana OX=3702 GN=At3g52030 PE=4 SV=2 && PF12937:F-box-like"]
[11,4247044,4247214,171,32,0.426873148812366,0.222518025221073,0.204355123591294,180.917345925687,"CHH","Os11g0183900","promoter","aspartic protease 2","Similar to Aspartic proteinase Asp1 precursor (EC 3.4.23.- && sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica OX=39947 GN=ASP1 PE=2 SV=1 && PF14543:Xylanase inhibitor N-terminal|PF14541:Xylanase inhibitor C-terminal"]
[11,4421601,4421665,65,24,0.245153518753031,0.144376271463799,0.100777247289232,104.573992206109,"CHH","11:4420896:4422896","CGI_shore"]
[11,4709411,4709484,74,23,0.0808711255390362,0.0109506180213051,0.0699205075177311,129.652171405186,"CHH","11:4708682:4710682","CGI_shore"]
[11,4807808,4807949,142,61,0.193948519332348,0.0584464393821528,0.135502079950195,279.006700323549,"CG","Os11g0195800","exon","Os11g0195800","Conserved hypothetical protein && - && -"]
[11,4836132,4836328,197,54,0.0861590907747028,0.0344905487360338,0.051668542038669,241.769324211507,"CHH","11:4833554:4837505","CGI"]
[11,4865491,4865610,120,39,0.515301075275292,0.330662690843705,0.184638384431588,200.085780930287,"CG","Os11g0197200","promoter","Os11g0197200","Hypothetical protein && - && PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain"]
[11,5009076,5009148,73,23,0.505859447013318,0.319017350273955,0.186842096739363,100.120903358935,"CHH","Os11g0199700","utr5","Os11g0199700","Similar to VHS and GAT domain protein && sp|Q9LPL6|TOL3_ARATH TOM1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOL3 PE=1 SV=1 && -"]
[11,5208207,5208265,59,9,0.910801102086056,0.857430686012466,0.0533704160735899,36.226708017055,"CG","11:5206767:5208767","CGI_shore"]
[11,5377306,5377492,187,45,0.110421358969666,0.0325465553055527,0.0778748036641136,198.896293038135,"CHH","11:5377477:5377828","CGI"]
[11,5539431,5539507,77,22,0.552305440189688,0.398200293385946,0.154105146803742,100.709932447418,"CHH","11:5537914:5539915","CGI_shore"]
[11,5635277,5635331,55,20,0.37327414493569,0.172752979620591,0.200521165315099,93.5262900020589,"CHH","Os11g0209502","promoter","Os11g0209502","F-box domain, cyclin-like domain containing protein && sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana OX=3702 GN=FBL13 PE=2 SV=1 && -"]
[11,5756933,5757154,222,56,0.286410258679764,0.0915058882294341,0.19490437045033,462.789646914319,"CHH","11:5756366:5758366","CGI_shore"]
[11,5803617,5803686,70,23,0.0765578688176229,0.0200069175968674,0.0565509512207555,97.5236018435994,"CHH","Os11g0211650","promoter","Os11g0211650","Similar to Leucine Rich Repeat family protein && - && -"]
[11,5827076,5827144,69,17,0.0958849370794014,0.0369581531226676,0.0589267839567338,76.6258797985266,"CHH","Os11g0212000","promoter","Os11g0212000","Similar to Leucine Rich Repeat family protein, expressed && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && PF13855:Leucine rich repeat|PF00931:NB-ARC domain"]
[11,6005580,6005805,226,40,0.362809399845293,0.151741782808027,0.211067617037266,185.674762639721,"CHH","11:6003614:6005615","CGI_shore"]
[11,6075371,6075662,292,63,0.160591915475881,0.0375995274990974,0.122992387976784,336.452731432798,"CHH","Os11g0216300","promoter","Os11g0216300","ABC-1 domain containing protein && sp|Q8RWG1|AB1K1_ARATH Protein ACTIVITY OF BC1 COMPLEX KINASE 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABC1K1 PE=1 SV=1 && PF03109:ABC1 family"]
[11,6377725,6377810,86,21,0.666098130187991,0.839932645477673,-0.173834515289682,-95.805809677128,"CG","11:6376169:6378170","CGI_shore"]
[11,6395727,6396126,400,133,0.585287612768225,0.73666153574945,-0.151373922981226,-888.583573632675,"CG","11:6394203:6409063","CGI"]
[11,6538836,6538936,101,29,0.311913438117577,0.123188203565807,0.188725234551769,165.225034535314,"CHH","11:6537187:6539188","CGI_shore"]
[11,6701745,6701859,115,40,0.193654222826993,0.0793236657188623,0.114330557108131,216.406855185928,"CHH","Os11g0227800","promoter","Os11g0227800","NB-ARC domain containing protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[11,6836659,6836742,84,38,0.0866306127643388,0.0340555408848865,0.0525750718794523,152.21261655514,"CHH","Os11g0228600","intron","Os11g0228600","Similar to NB-ARC domain containing protein, expressed && sp|Q9LQ54|DRL12_ARATH Probable disease resistance protein At1g59620 OS=Arabidopsis thaliana OX=3702 GN=At1g59620 PE=2 SV=3 && -"]
[11,6856369,6856495,127,35,0.0485062452370819,0.00785823896780279,0.0406480062692791,171.69230818447,"CHH","11:6856418:6858418","CGI_shore"]
[11,7051060,7051127,68,23,0.422781887100731,0.299721752229913,0.123060134870818,101.628516424045,"CHH","11:7050563:7052563","CGI_shore"]
[11,7154976,7155108,133,40,0.186736264393096,0.0301107109293892,0.156625553463707,201.724365615314,"CHH","11:7151458:7156006","CGI"]
[11,7525168,7525362,195,56,0.203770326354741,0.0715462174884296,0.132224108866311,330.37159608569,"CHH","Os11g0240900","intron","Os11g0240900","Protein of unknown function DUF2363 domain containing protein && sp|B0BNA9|CNO11_RAT CCR4-NOT transcription complex subunit 11 OS=Rattus norvegicus OX=10116 GN=Cnot11 PE=2 SV=1 && PF10155:CCR4-NOT transcription complex subunit 11"]
[11,7653876,7654085,210,68,0.303911117980295,0.114304932524211,0.189606185456084,479.674763849874,"CHH","11:7652272:7654273","CGI_shore"]
[11,7840538,7840612,75,21,0.111918895779192,0.0561046662614168,0.0558142295177755,83.5299790006957,"CHH","11:7838542:7840542","CGI_shore"]
[11,7946406,7946985,580,94,0.307557897641388,0.0995118820493968,0.208046015591991,450.274125640958,"CHH","11:7946275:7947113","CGI"]
[11,8019782,8019871,90,7,0.698883665888555,0.85485647165795,-0.155972805769395,-30.2610850263314,"CG","Os11g0248200","intron","Os11g0248200","Nucleotide-binding, alpha-beta plait domain containing protein && sp|O80567|LRP6B_ARATH La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2 && PF05383:La domain"]
[11,8048686,8048759,74,27,0.0994403543260071,0.0493830650412231,0.050057289284784,115.904510147389,"CHH","11:8048682:8050682","CGI_shore"]
[11,8220157,8220211,55,28,0.0794198812591852,0.0444257820200895,0.0349940992390956,126.747510299442,"CHH","11:8218369:8220369","CGI_shore"]
[11,8312196,8312294,99,27,0.624572789891733,0.466489403735053,0.15808338615668,129.402449836216,"CHH","11:8312034:8314034","CGI_shore"]
[11,8945798,8945904,107,37,0.156825109537471,0.0994463121680936,0.0573787973693777,160.557053112861,"CHH","11:8945492:8947023","CGI"]
[11,8945798,8945904,107,37,0.156825109537471,0.0994463121680936,0.0573787973693777,160.557053112861,"CHH","11:8945525:8947525","CGI_shore"]
[11,9185620,9185683,64,21,0.108963892393052,0.0418025279894189,0.0671613644036328,97.4022753973464,"CHH","11:9184429:9186430","CGI_shore"]
[11,9322377,9322478,102,16,0.248266922413741,0.0910549009752629,0.157212021438478,88.6918784938149,"CHH","11:9321172:9323172","CGI_shore"]
[11,9646064,9646178,115,38,0.06497897308326,0.2076765630537,-0.14269758997044,-198.250034478927,"CHH","11:9645441:9646416","CGI"]
[11,9757939,9758021,83,26,0.334961874194727,0.142041620852106,0.192920253342621,169.570043504193,"CHH","11:9756907:9758908","CGI_shore"]
[11,9987055,9987127,73,19,0.116071097454335,0.0549660370959153,0.0611050603584193,116.311061836496,"CHH","11:9985552:9987553","CGI_shore"]
[11,10016625,10016746,122,9,0.253742078037333,0.812724896879194,-0.558982818841861,-54.367584746614,"CHG","11:10015982:10017982","CGI_shore"]
[11,10934686,10934793,108,33,0.176387258172051,0.0447010449515506,0.1316862132205,176.750100534029,"CHH","11:10933212:10939179","CGI"]
[11,10934686,10934793,108,33,0.176387258172051,0.0447010449515506,0.1316862132205,176.750100534029,"CHH","Os11g0297300","promoter","Os11g0297300","Similar to Beta-D-xylosidase && sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BXL7 PE=2 SV=2 && PF01915:Glycosyl hydrolase family 3 C-terminal domain|PF00933:Glycosyl hydrolase family 3 N terminal domain|PF14310:Fibronectin type III-like domain"]
[11,11338285,11338364,80,23,0.154691476395725,0.374114936311589,-0.219423459915864,-123.050282475726,"CG","11:11337338:11338546","CGI"]
[11,11430098,11430338,241,74,0.17221161916377,0.0722375137096358,0.0999741054541339,433.409377968948,"CHH","11:11428510:11430511","CGI_shore"]
[11,11801924,11802201,278,66,0.127432396794151,0.0193073712835909,0.10812502551056,365.160661414291,"CHH","Os11g0309000","promoter","Os11g0309000","Synaptojanin, N-terminal domain containing protein && sp|Q9C5G5|SAC7_ARATH Phosphoinositide phosphatase SAC7 OS=Arabidopsis thaliana OX=3702 GN=SAC7 PE=2 SV=1 && PF02383:SacI homology domain"]
[11,11908036,11908155,120,12,0.275501009328049,0.618466707924828,-0.342965698596779,-64.4645374423017,"CHG","Os11g0310800","promoter","Os11g0310800","DEAD-like helicase, N-terminal domain containing protein && sp|Q93Y16|DEAH4_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana OX=3702 GN=At1g27900 PE=1 SV=1 && PF04408:Helicase associated domain (HA2)|PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain|PF07717:Oligonucleotide/oligosaccharide-binding (OB)-fold"]
[11,12693985,12694232,248,71,0.116693731250811,0.0429347726708117,0.0737589585799996,312.977085706255,"CHH","11:12674081:12694976","CGI"]
[11,12819260,12819455,196,32,0.249946139041203,0.627946591967612,-0.378000452926409,-175.089535240694,"CHG","Os11g0416900","promoter","ABC TRANSPORTER G FAMILY MEMBER 28","ABC transporter-like domain containing protein && sp|Q9FF46|AB28G_ARATH ABC transporter G family member 28 OS=Arabidopsis thaliana OX=3702 GN=ABCG28 PE=3 SV=1 && PF00005:ABC transporter"]
[11,13330344,13330432,89,16,0.588467742882538,0.368028484616564,0.220439258265974,79.8130068154094,"CHG","11:13328586:13330587","CGI_shore"]
[11,13330344,13330432,89,16,0.588467742882538,0.368028484616564,0.220439258265974,79.8130068154094,"CHG","11:13328590:13330590","CGI_shore"]
[11,13417924,13418000,77,20,0.0706192860320006,0.0184139415314066,0.0522053445005941,138.268549200192,"CHH","11:13416559:13418560","CGI_shore"]
[11,13452604,13452661,58,9,0.882483328884187,0.747189147013224,0.135294181870963,36.7936564118306,"CG","11:13450652:13452653","CGI_shore"]
[11,13631137,13631225,89,22,0.264335762772105,0.172559881444077,0.0917758813280286,101.135642331114,"CHH","Os11g0427401","utr3","Os11g0427401","Conserved hypothetical protein && - && -"]
[11,13716994,13717112,119,27,0.162879619726745,0.0430661666749765,0.119813453051768,171.931835683972,"CHH","11:13716733:13718733","CGI_shore"]
[11,13887926,13887997,72,17,0.244556912549901,0.139997622169504,0.104559290380397,75.2022794959748,"CHH","11:13887301:13889302","CGI_shore"]
[11,13918524,13918584,61,19,0.0803375009168684,0.0212025889910804,0.059134911925788,103.146266413661,"CHH","11:13916980:13918980","CGI_shore"]
[11,14108331,14108415,85,34,0.147344743617874,0.0806021931842969,0.0667425504335772,151.502892410459,"CHH","11:14107627:14109627","CGI_shore"]
[11,14120348,14120473,126,35,0.311708594399753,0.19653633057427,0.115172263825483,153.651762893724,"CHH","11:14118864:14120864","CGI_shore"]
[11,14138158,14138511,354,124,0.0801474437140833,0.0281735711289923,0.051973872585091,539.255984283252,"CHH","Os11g0435500","promoter","Os11g0435500","Similar to alkaline alpha galactosidase 3 && sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 && -"]
[11,14379649,14379838,190,55,0.293124730895888,0.153397801439858,0.13972692945603,299.479709899285,"CHH","11:14378605:14380102","CGI"]
[11,14562186,14562259,74,24,0.0627237430625202,0.0229258406614444,0.0397979024010757,102.948879126979,"CHH","11:14560811:14562811","CGI_shore"]
[11,14637890,14637994,105,31,0.0633756834942921,0.0306811416913394,0.0326945418029526,118.881414478341,"CHH","11:14636695:14638696","CGI_shore"]
[11,14854224,14854359,136,38,0.239446472041817,0.0897918734462236,0.149654598595594,195.950099543466,"CHH","11:14853847:14855848","CGI_shore"]
[11,14913299,14913403,105,21,0.182175469389072,0.0366224529664677,0.145553016422604,94.9642285498684,"CHH","11:14899625:14916301","CGI"]
[11,15451172,15451279,108,14,0.164351565684879,0.0217857991595538,0.142565766525325,102.82730373548,"CHH","Os11g0456100","promoter","Os11g0456100","Protein of unknown function DUF760 domain containing protein && sp|Q9LVJ0|UVB31_ARATH UV-B-induced protein At3g17800, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g17800 PE=2 SV=1 && PF05542:Protein of unknown function (DUF760)"]
[11,15456202,15456300,99,7,0.222122921358226,0.0407824236775537,0.181340497680672,31.3997350479173,"CHG","Os11g0456200","promoter","Os11g0456200","Conserved hypothetical protein && - && -"]
[11,15629571,15629715,145,52,0.190933916648142,0.0471454580440378,0.143788458604104,232.95241903258,"CHH","11:15627678:15629679","CGI_shore"]
[11,15703364,15703627,264,61,0.357994732070207,0.0693150505654759,0.288679681504731,378.327861287736,"CHH","11:15701536:15703536","CGI_shore"]
[11,15709032,15709213,182,56,0.109067144976672,0.0345085992864143,0.0745585456902579,283.406744451173,"CHH","Os11g0461000","intron","SERINE CARBOXYPEPTIDASE 61","Peptidase S10, serine carboxypeptidase family protein && sp|Q8H780|SCP13_ARATH Serine carboxypeptidase-like 13 OS=Arabidopsis thaliana OX=3702 GN=SCPL13 PE=2 SV=2 && PF00450:Serine carboxypeptidase"]
[11,15905427,15905532,106,15,0.150506360708971,0.0160766255211626,0.134429735187809,78.0616192101884,"CHH","Target=(CATATA)n:5-180;Class=Simple_repeat","repeat"]
[11,16341292,16341465,174,71,0.052535722746894,0.122158010528336,-0.069622287781442,-353.399944864477,"CG","11:16340202:16342134","CGI"]
[11,16342215,16342308,94,7,0.166781065023389,0.759155572565999,-0.59237450754261,-46.8727947878252,"CG","11:16342134:16344135","CGI_shore"]
[11,16840749,16840832,84,17,0.273499368203587,0.0527862036828352,0.220713164520752,80.7435260554377,"CHH","11:16839785:16841786","CGI_shore"]
[11,16840749,16840832,84,17,0.273499368203587,0.0527862036828352,0.220713164520752,80.7435260554377,"CHH","11:16840295:16841222","CGI"]
[11,17009045,17009131,87,33,0.134812589102774,0.0303337414136044,0.104478847689169,170.83883408966,"CHH","11:17008698:17010698","CGI_shore"]
[11,17062385,17062451,67,19,0.383474588413425,0.157665297176234,0.225809291237191,102.017847076077,"CHH","11:17062447:17064447","CGI_shore"]
[11,17289298,17289362,65,17,0.0998949209044205,0.0398531614840235,0.060041759420397,91.721307702606,"CHH","Os11g0490200","promoter","Os11g0490200","Protein kinase, catalytic domain domain containing protein && sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana OX=3702 GN=At3g47110 PE=3 SV=1 && PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain|PF00069:Protein kinase domain"]
[11,17402710,17402895,186,48,0.23640618419878,0.149901821326515,0.0865043628722652,223.036529221936,"CHH","11:17402002:17404003","CGI_shore"]
[11,17536230,17536351,122,36,0.150172437211023,0.0550959614468869,0.0950764757641365,171.967181589553,"CHH","11:17535499:17537500","CGI_shore"]
[11,17537026,17537112,87,21,0.0759230878275853,0.0332556812705004,0.0426674065570849,117.947282050247,"CHH","11:17535158:17537158","CGI_shore"]
[11,17842303,17842382,80,11,0.303552206953634,0.547633468168902,-0.244081261215268,-42.5487135940555,"CHG","11:17842369:17844370","CGI_shore"]
[11,17842303,17842382,80,11,0.303552206953634,0.547633468168902,-0.244081261215268,-42.5487135940555,"CHG","11:17840695:17842369","CGI"]
[11,17986804,17986891,88,19,0.15948633770969,0.0686510890354599,0.0908352486742301,93.7841052137161,"CHH","11:17986203:17988204","CGI_shore"]
[11,18542533,18542604,72,20,0.876995834268352,0.7150474565716,0.161948377696752,85.510953570414,"CG","11:18542075:18544076","CGI_shore"]
[11,18652862,18652961,100,20,0.216657481872916,0.0934111303658357,0.123246351507081,93.7548913212968,"CHH","11:18652263:18654264","CGI_shore"]
[11,18878608,18878727,120,10,0.553148602617112,0.270411188420896,0.282737414196216,50.9400495268258,"CG","11:18877613:18879613","CGI_shore"]
[11,18945704,18945845,142,38,0.199641334159952,0.0761742988734638,0.123467035286489,220.655857391654,"CHH","11:18944945:18946945","CGI_shore"]
[11,18978465,18978619,155,39,0.178034099358311,0.0637692927078766,0.114264806650435,198.307964738687,"CHH","11:18978085:18980086","CGI_shore"]
[11,19116978,19117206,229,38,0.296505325372743,0.118525439515978,0.177979885856765,241.964440692906,"CHH","Os11g0526800","promoter","Os_F0758","Conserved hypothetical protein && - && -"]
[11,19116978,19117206,229,38,0.296505325372743,0.118525439515978,0.177979885856765,241.964440692906,"CHH","11:19116695:19118696","CGI_shore"]
[11,19340214,19340346,133,36,0.076370225086345,0.0125318473270234,0.0638383777593216,177.355161666497,"CHH","11:19340242:19342243","CGI_shore"]
[11,19666500,19666567,68,24,0.375342941073323,0.217829411663472,0.15751352940985,133.488997521771,"CHH","11:19664628:19666629","CGI_shore"]
[11,19964455,19964685,231,49,0.395692130567769,0.155135679641967,0.240556450925802,345.198779640492,"CHH","Os11g0543500","promoter","Os11g0543500","Similar to H0502B11.6 protein && sp|Q68CP4|HGNAT_HUMAN Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens OX=9606 GN=HGSNAT PE=1 SV=2 && PF07786:Protein of unknown function (DUF1624)"]
[11,20005745,20006092,348,121,0.234502468209477,0.0885109127331945,0.145991555476283,687.484601472097,"CHH","11:20004299:20006300","CGI_shore"]
[11,20025266,20025605,340,89,0.322301290955942,0.174068808667071,0.148232482288871,411.174238353812,"CHH","11:20023702:20025702","CGI_shore"]
[11,20057606,20057660,55,6,0.674298344199568,0.23454171781029,0.439756626389278,32.8436031221172,"CHG","11:20048718:20062584","CGI"]
[11,20107770,20107950,181,60,0.289164089736018,0.172012103858064,0.117151985877954,310.209541193823,"CHH","Os11g0545650","TSS","Os11g0545650","Conserved hypothetical protein && - && -"]
[11,20107770,20107950,181,60,0.289164089736018,0.172012103858064,0.117151985877954,310.209541193823,"CHH","Os11g0545650","promoter","Os11g0545650","Conserved hypothetical protein && - && -"]
[11,20187824,20187943,120,32,0.212827797355031,0.0747391634266581,0.138088633928373,151.790189859864,"CHH","Os11g0547000","promoter","FLAVIN-BINDING, KELCH REPEAT, F BOX 1","Autonomous floral activator, Promotion of flowerin && sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0547000 PE=2 SV=2 && PF07646:Kelch motif|PF13415:Galactose oxidase, central domain|PF13418:Galactose oxidase, central domain"]
[11,20424002,20424161,160,19,0.138004393725117,0.0149262027560218,0.123078190969096,98.7319463743098,"CHH","Os11g0549695","promoter","Os11g0549695","Maf-like protein family protein && sp|Q54TC5|NTPPB_DICDI 7-methyl-GTP pyrophosphatase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0281937 PE=3 SV=1 && PF02545:Maf-like protein"]
[11,20521656,20521837,182,65,0.0496611719032927,0.00460861447063008,0.0450525574326626,304.397631314547,"CHH","Os11g0551800","promoter","Os11g0551800","Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1) && sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana OX=3702 GN=At4g27745 PE=3 SV=2 && PF03226:Yippee zinc-binding/DNA-binding /Mis18, centromere assembly"]
[11,20656122,20656299,178,34,0.182723672603179,0.0918615542712989,0.0908621183318806,155.97236824559,"CHH","11:20656056:20658057","CGI_shore"]
[11,20893815,20893944,130,44,0.0628671818550658,0.0192780026102423,0.0435891792448236,186.018574755351,"CHH","Os11g0560900","promoter","Os11g0560900","Similar to Leucine Rich Repeat family protein && - && -"]
[11,21008728,21008812,85,11,0.682895851317264,0.890921792713687,-0.208025941396423,-43.3223829346965,"CG","11:21007015:21009015","CGI_shore"]
[11,21402807,21402876,70,15,0.160551593721058,0.0687175941518832,0.0918339995691746,87.4377920193264,"CHH","11:21402336:21404337","CGI_shore"]
[11,21406352,21406540,189,57,0.0789373836676656,0.0387888589277182,0.0401485247399474,238.442825945984,"CHH","11:21405805:21407806","CGI_shore"]
[11,21548983,21549055,73,39,0.109387115027159,0.0628032178978405,0.0465838971293188,174.956422217313,"CHH","Os11g0573800","intron","DnaJ domain protein C75","Hypothetical conserved gene && sp|Q5YNI2|DNAJ2_NOCFA Chaperone protein DnaJ 2 OS=Nocardia farcinica (strain IFM 10152) OX=247156 GN=dnaJ2 PE=3 SV=1 && -"]
[11,22030980,22031120,141,20,0.269583702187021,0.00812704956870195,0.261456652618319,133.432743899107,"CHH","Os11g0582801","intron","Os11g0582801","Hypothetical gene && - && -"]
[11,22284042,22284188,147,41,0.18463871656054,0.0314754141622138,0.153163302398326,276.70638277043,"CHH","11:22283915:22285916","CGI_shore"]
[11,22409856,22410020,165,51,0.108564621878255,0.0548779410899244,0.0536866807883303,216.350253056789,"CHH","11:22407983:22409983","CGI_shore"]
[11,22599796,22599911,116,28,0.103643732955159,4.5103796613846E-3,0.0991333532937741,146.990432203697,"CHH","11:22599688:22601689","CGI_shore"]
[11,22690588,22690658,71,21,0.339092784682471,0.22397340024277,0.115119384439701,96.3683845582108,"CHH","11:22689158:22691158","CGI_shore"]
[11,22885342,22885441,100,17,0.0908996243717927,0.0048970447197894,0.0860025796520033,96.6094714851433,"CHH","Os11g0598900","promoter","Os11g0598900","Domain of unknown function DUF629 domain containing protein && - && PF04780:Protein of unknown function (DUF629)"]
[11,22898530,22898647,118,46,0.322870643046674,0.155687915872553,0.167182727174121,241.32492046818,"CHH","11:22897833:22898742","CGI"]
[11,23286750,23286806,57,12,0.373386396159414,0.159108189355085,0.214278206804328,71.7931438677955,"CHH","Os11g0604500","promoter","Os11g0604500","Conserved hypothetical protein && - && -"]
[11,23367720,23367899,180,36,0.419588301740571,0.800889148414688,-0.381300846674117,-180.968408759718,"CG","11:23366034:23368035","CGI_shore"]
[11,23455929,23456068,140,22,0.587367392428978,0.135013323372859,0.452354069056119,142.335891789608,"CHH","11:23454419:23456420","CGI_shore"]
[11,23789274,23789449,176,78,0.266025479968869,0.146650592344572,0.119374887624297,470.025525950146,"CHH","11:23787421:23789421","CGI_shore"]
[11,24218650,24218731,82,29,0.104408493750247,0.00704407731384186,0.0973644164364052,155.797067862498,"CHH","Os11g0621200","utr3","Os11g0621200","Similar to OSIGBa0117N13.1 protein && - && -"]
[11,24387334,24387394,61,7,0.218866512723414,0.105186369537675,0.11368014318574,31.3501659274806,"CHG","11:24385398:24387399","CGI_shore"]
[11,24563218,24563274,57,14,0.0995411503305922,0.0279915876548426,0.0715495626757496,75.3019161091634,"CHH","Os11g0626700","utr3","Os11g0626700","Hypothetical conserved gene && - && -"]
[11,24733656,24733730,75,16,0.0755371980789043,0.00667696215548079,0.0688602359234236,76.7045956471956,"CHH","Os11g0630501","promoter","Os11g0630501","Similar to BTB/POZ domain containing protein && - && -"]
[11,24733680,24733949,270,52,0.327723947835356,0.13469013619501,0.193033811640346,286.25974338811,"CG","Os11g0630501","promoter","Os11g0630501","Similar to BTB/POZ domain containing protein && - && -"]
[11,24866558,24866638,81,26,0.0730994454259708,0.0348134172390947,0.038286028186876,119.317001797312,"CHH","11:24864360:24877163","CGI"]
[11,25023159,25023388,230,82,0.0680180882890591,0.0128194280327723,0.0551986602562868,392.495473129982,"CHH","11:25022584:25024585","CGI_shore"]
[11,25224375,25224482,108,28,0.191881453361807,0.0981150719509293,0.0937663814108776,123.144613935873,"CHH","11:25222925:25224925","CGI_shore"]
[11,25508485,25508586,102,29,0.336963307617106,0.186769837225168,0.150193470391938,154.54334069826,"CHH","11:25506763:25508763","CGI_shore"]
[11,25519938,25520256,319,91,0.168523740909101,0.0691844304362221,0.0993393104728787,523.590461704112,"CHH","11:25519779:25521780","CGI_shore"]
[11,25772911,25773128,218,55,0.466341210206726,0.285869036149967,0.180472174056759,369.144014933714,"CHH","11:25772459:25774460","CGI_shore"]
[11,25988293,25988406,114,25,0.11266358221466,0.0379332306236194,0.0747303515910408,127.223540984353,"CHH","11:25986885:25988886","CGI_shore"]
[11,26150552,26150633,82,27,0.105329433531177,0.0490078617578634,0.0563215717733139,112.853099461162,"CHH","11:26149832:26151833","CGI_shore"]
[11,26261852,26261981,130,41,0.271155458960238,0.162928179501149,0.108227279459088,202.196135801638,"CHH","Os11g0655800","promoter","Os11g0655800","Lipase, class 3 family protein && sp|P19515|LIP_RHIMI Lipase OS=Rhizomucor miehei OX=4839 PE=1 SV=2 && PF01764:Lipase (class 3)"]
[11,26329870,26329936,67,6,0.482339457780179,0.0718887189227984,0.410450738857381,29.6809949808553,"CHG","Target=(TCG)n:1-48;Class=Simple_repeat","repeat"]
[11,26583987,26584050,64,11,0.0694360092848244,0.0312533380846233,0.0381826712002011,36.6034120894332,"CG","Os11g0661800","promoter","Os11g0661800","Concanavalin A-like lectin/glucanase domain containing protein && - && -"]
[11,26805006,26805228,223,40,0.267354332030857,0.439165323098163,-0.171810991067306,-236.232944025273,"CG","11:26805080:26806247","CGI"]
[11,26956912,26957175,264,64,0.339648772719673,0.0460985452509501,0.293550227468723,540.486802074768,"CHH","11:26957173:26959173","CGI_shore"]
[11,27381248,27381443,196,61,0.148212125899295,0.0626934831405051,0.0855186427587896,345.771813112329,"CHH","11:27380990:27382990","CGI_shore"]
[11,27715308,27715520,213,33,0.268424454701069,0.453292038508142,-0.184867583807074,-144.030770711759,"CG","Os11g0685100","intron","Os11g0685100","Hypothetical gene && - && -"]
[11,27760193,27760336,144,44,0.167665676157502,0.0480494195792749,0.119616256578227,214.827708996727,"CHH","11:27757498:27761598","CGI"]
[11,27832122,27832302,181,38,0.117136279837578,0.0374857193839265,0.0796505604536518,202.292843029416,"CHH","11:27832000:27834001","CGI_shore"]
[11,28017194,28017271,78,20,0.442184735515818,0.718403165849273,-0.276218430333455,-91.8257603250147,"CHG","11:28015653:28019337","CGI"]
[11,28295427,28295555,129,54,0.0943869867619702,0.0308890246355915,0.0634979621263787,263.155794607143,"CHH","11:28295503:28297503","CGI_shore"]
[11,28411794,28411858,65,15,0.364831293304021,0.0618749075983204,0.302956385705701,81.954041690979,"CHH","11:28409942:28411942","CGI_shore"]
[11,28504050,28504116,67,20,0.0833223744762887,0.0171506985218403,0.0661716759544485,90.9996586438894,"CHH","11:28503990:28504251","CGI"]
[11,28681285,28681531,247,64,0.284570824393199,0.13138542674798,0.15318539764522,348.260317489081,"CHH","11:28680273:28682273","CGI_shore"]
[11,28712628,28712827,200,49,0.55361416617716,0.846612003070044,-0.292997836892884,-248.238896919228,"CG","11:28712486:28713555","CGI"]
[11,28771009,28771286,278,54,0.531129484245708,0.814483726325428,-0.28335424207972,-454.89979791752,"CG","Os11g0702600","exon","Os11g0702600","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28844473,28844891,419,117,0.351673512270804,0.203461837643567,0.148211674627237,557.909910574476,"CHH","11:28842618:28844619","CGI_shore"]
[12,161465,161524,60,5,0.193592838674534,0.542700398988534,-0.349107560313999,-21.006857226497,"CG","12:160007:162008","CGI_shore"]
[12,503490,503552,63,16,0.0216794830449117,0.20423734093399,-0.182557857889078,-77.5994873148323,"CHH","12:502931:503534","CGI"]
[12,590273,590450,178,40,0.192848982388409,0.0566877409559828,0.136161241432426,200.263323540552,"CHH","12:589967:590308","CGI"]
[12,687535,687659,125,26,0.0798850113876623,0.0144702402481487,0.0654147711395136,120.501431328418,"CHH","12:686938:688938","CGI_shore"]
[12,899240,899365,126,38,0.226522240088846,0.0919616414313768,0.134560598657469,183.497172053369,"CHH","12:899261:899999","CGI"]
[12,1003187,1003374,188,24,0.716987634603396,0.432679746236346,0.28430788836705,152.04968605346,"CG","Os12g0121150","intron","Os12g0121150","Hypothetical gene && sp|Q9ZVI9|PECT1_ARATH Ethanolamine-phosphate cytidylyltransferase OS=Arabidopsis thaliana OX=3702 GN=PECT1 PE=1 SV=1 && -"]
[12,1003271,1003408,138,8,0.664728991462099,0.270890551516696,0.393838439945403,48.9750612180525,"CHG","Os12g0121150","intron","Os12g0121150","Hypothetical gene && sp|Q9ZVI9|PECT1_ARATH Ethanolamine-phosphate cytidylyltransferase OS=Arabidopsis thaliana OX=3702 GN=PECT1 PE=1 SV=1 && -"]
[12,1339303,1339356,54,19,0.271977391533581,0.0649202377357035,0.207057153797877,78.1058553250332,"CG","12:1339196:1339403","CGI"]
[12,1378455,1378517,63,9,0.363047402256268,0.186168660557026,0.176878741699242,45.5134243307604,"CG","12:1378236:1378722","CGI"]
[12,1446297,1446469,173,45,0.251662657354132,0.0812009790352876,0.170461678318845,249.209778461803,"CG","Os12g0129650","utr5","Os12g0129650","Similar to cDNA, clone: J065154E06, full insert sequence && sp|Q8GWR1|AAAS_ARATH Aladin OS=Arabidopsis thaliana OX=3702 GN=AAAS PE=1 SV=1 && -"]
[12,1748467,1748652,186,43,0.109716022222227,0.0248406942368489,0.0848753279853781,233.089549422688,"CHH","12:1747671:1749671","CGI_shore"]
[12,1828804,1828934,131,56,0.289184156317235,0.152870341498673,0.136313814818562,265.86056367845,"CHH","12:1826911:1828911","CGI_shore"]
[12,1965468,1965591,124,26,0.505889415841167,0.332757149076281,0.173132266764886,129.675245688737,"CHH","12:1964022:1966022","CGI_shore"]
[12,1967864,1968121,258,91,0.40398250006281,0.256536563554603,0.147445936508208,486.484353674217,"CHH","Os12g0140600","promoter","Os12g0140600","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1 && PF13639:Ring finger domain"]
[12,1968424,1968539,116,37,0.391555061838255,0.269910528343007,0.121644533495248,183.534687971636,"CHH","Os12g0140600","promoter","Os12g0140600","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1 && PF13639:Ring finger domain"]
[12,2047160,2047279,120,41,0.114908910242044,0.0420141710718456,0.0728947391701988,195.665849657455,"CHH","12:2046540:2084775","CGI"]
[12,2100240,2100459,220,73,0.166530401596937,0.0647423548485773,0.10178804674836,408.351426514486,"CHH","12:2099666:2101667","CGI_shore"]
[12,2375001,2375099,99,19,0.316664315027553,0.516132517978497,-0.199468202950943,-101.052032227177,"CHG","Os12g0148400","intron","Os12g0148400","Similar to HEAT repeat family protein, expressed && - && PF13001:Proteasome stabiliser|PF13976:GAG-pre-integrase domain"]
[12,2684346,2684408,63,16,0.459778013405517,0.288499519539327,0.171278493866191,92.4345401615643,"CHH","Os12g0154600","promoter","Os12g0154600","Protein of unknown function DUF250 domain containing protein && sp|Q8RWW7|URGT4_ARATH UDP-rhamnose/UDP-galactose transporter 4 OS=Arabidopsis thaliana OX=3702 GN=URGT4 PE=1 SV=1 && PF03151:Triose-phosphate Transporter family"]
[12,2747445,2747518,74,14,0.125685511370752,0.340861877856944,-0.215176366486193,-64.5228031808279,"CG","Os12g0156000","promoter","Os12g0156000","Similar to OSIGBa0134P10.11 protein && - && PF04520:Senescence regulator"]
[12,2820382,2820462,81,16,0.698449262452358,0.845632637281763,-0.147183374829405,-77.9666212642422,"CG","Os12g0156866","exon","cationic amino acid transporter 9","Similar to Amino acid permease family protein, expressed && sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAT6 PE=2 SV=1 && PF13520:Amino acid permease|PF13906:C-terminus of AA_permease"]
[12,2936056,2936123,68,17,0.129279434487265,0.0455569841222308,0.0837224503650343,84.2346301609594,"CHH","12:2935610:2937611","CGI_shore"]
[12,3055627,3055722,96,24,0.110960389843768,0.0294981064206722,0.0814622834230954,114.633341428823,"CHH","12:3054422:3056423","CGI_shore"]
[12,3819790,3819953,164,31,0.130354543875682,0.0332662630802382,0.0970882807954437,155.49211173838,"CHH","12:3818835:3820835","CGI_shore"]
[12,3823874,3824113,240,41,0.618737870199395,0.124153870531079,0.494583999668317,369.419286626393,"CG","12:3820836:3824787","CGI"]
[12,3979314,3979495,182,61,0.111308860307882,0.0323786885688511,0.0789301717390307,315.066388190802,"CHH","12:3967441:3986577","CGI"]
[12,4070748,4070802,55,26,0.196473517289218,0.110340749198308,0.0861327680909092,112.266018096093,"CHH","12:4070159:4071201","CGI"]
[12,4126557,4126628,72,18,0.151575359854578,0.086148975549276,0.0654263843053024,90.1962486648488,"CHH","12:4125883:4127883","CGI_shore"]
[12,4221223,4221338,116,15,0.315876284799946,0.729097659884263,-0.413221375084317,-82.0246866464269,"CG","Os12g0183450","exon","Os12g0183450","Similar to OSIGBa0104J13.2 protein && - && -"]
[12,4337732,4337897,166,34,0.716938982826275,0.383729897526079,0.333209085300196,179.278946277408,"CG","Os12g0186600","utr5","Os12g0186600","Conserved hypothetical protein && - && -"]
[12,4425888,4425956,69,13,0.0590451576780436,0.137769455948419,-0.0787242982703758,-74.2049324036851,"CHH","12:4424982:4426983","CGI_shore"]
[12,4865732,4865920,189,71,0.0959980836437674,0.0110729120429898,0.0849251716007776,409.802787307702,"CHH","12:4864274:4866274","CGI_shore"]
[12,5029960,5030092,133,34,0.362132668560431,0.139983431204971,0.22214923735546,171.446674707896,"CHH","Os12g0197400","promoter","Os12g0197400","Similar to chloroplast outer envelope protein 86 && sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 && PF11886:Translocase of chloroplast 159/132, membrane anchor domain|PF04548:AIG1 family"]
[12,5287738,5287839,102,17,0.371272651244195,0.146999074672695,0.2242735765715,83.0189227198616,"CHH","12:5286149:5288149","CGI_shore"]
[12,5373143,5373202,60,24,0.260081357283242,0.107415696825035,0.152665660458207,118.450133519389,"CHH","12:5372965:5374966","CGI_shore"]
[12,5407072,5407324,253,73,0.195359774353773,0.0948267386025064,0.100533035751266,351.460507309697,"CHH","12:5405940:5407940","CGI_shore"]
[12,5432866,5432989,124,33,0.582999004959915,0.833880279862179,-0.250881274902264,-140.9443294001,"CG","12:5432584:5433095","CGI"]
[12,5510868,5510987,120,24,0.414535017111004,0.75303587266304,-0.338500855552036,-110.896516841403,"CG","12:5510471:5512472","CGI_shore"]
[12,5659803,5659861,59,19,0.122636287369301,0.0512853160078578,0.0713509713614431,123.029835145697,"CHH","12:5659779:5661779","CGI_shore"]
[12,5794662,5794749,88,7,0.554662011460586,0.243474073204492,0.311187938256094,31.0997444111475,"CHG","12:5793129:5795130","CGI_shore"]
[12,5848096,5848219,124,48,0.0982518594698782,0.0362518161235197,0.0620000433463585,228.583444724389,"CHH","Os12g0211400","promoter","Os12g0211400","A/G-specific adenine glycosylase MutY, bacterial form domain containing protein && sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase OS=Arabidopsis thaliana OX=3702 GN=MYH PE=3 SV=1 && PF14815:NUDIX domain|PF00730:HhH-GPD superfamily base excision DNA repair protein"]
[12,6397697,6397791,95,27,0.28450020453867,0.105133305113402,0.179366899425268,140.153812355759,"CHH","12:6396095:6398096","CGI_shore"]
[12,6499687,6499738,52,24,0.0723325262867832,0.0249438533807739,0.0473886729060092,100.872578292591,"CHH","12:6498698:6499984","CGI"]
[12,6601710,6601835,126,43,0.181130022932468,0.0992429860261038,0.0818870369063645,210.409793240625,"CHH","12:6600692:6602693","CGI_shore"]
[12,6624869,6625082,214,47,0.380838284641368,0.208749947819079,0.17208833682229,249.325197346565,"CHH","12:6619976:6639070","CGI"]
[12,6686868,6686953,86,9,0.276124654536767,0.630630810058737,-0.35450615552197,-44.4921043947181,"CHG","12:6686828:6687830","CGI"]
[12,6728277,6728445,169,45,0.120364274939773,0.0351317106231597,0.0852325643166133,218.123870954637,"CHH","12:6727446:6729447","CGI_shore"]
[12,6969016,6969237,222,65,0.195842121517251,0.0513410020503861,0.144501119466865,349.466147144568,"CHH","Os12g0228300","intron","Os12g0228300","Conserved hypothetical protein && - && -"]
[12,6987734,6987827,94,29,0.199630921964177,0.054716985054945,0.144913936909232,132.88520634569,"CHH","Os12g0228500","promoter","Os12g0228500","Hypothetical conserved gene && - && PF14303:No apical meristem-associated C-terminal domain"]
[12,7045106,7045162,57,6,0.685768495292137,0.428283669073222,0.257484826218915,26.0800775785573,"CHG","12:7044461:7045213","CGI"]
[12,7092433,7092897,465,149,0.1782664475555,0.0293581222279355,0.148908325327564,1072.72074288061,"CHH","12:7092839:7093463","CGI"]
[12,7160597,7160764,168,63,0.154683255505147,0.0600997854443529,0.0945834700607942,337.255744050263,"CHH","12:7160411:7160849","CGI"]
[12,7167703,7167773,71,14,0.422407720986671,0.270839214673621,0.15156850631305,80.6429557205508,"CHH","12:7166047:7168047","CGI_shore"]
[12,7663821,7663890,70,31,0.102469674617499,0.0425380227144852,0.0599316519030134,140.811319481633,"CHH","Os12g0238900","promoter","Os12g0238900","Similar to HGA6 && sp|Q6ZFR0|XAT2_ORYSJ Alpha-1,3-arabinosyltransferase XAT2 OS=Oryza sativa subsp. japonica OX=39947 GN=XAT2 PE=1 SV=1 && PF04577:Protein of unknown function (DUF563)"]
[12,7708103,7708289,187,54,0.215455377647088,0.109823718923795,0.105631658723293,258.327958236723,"CHH","12:7707208:7709208","CGI_shore"]
[12,7877564,7877730,167,37,0.195732442591461,0.0867020580817388,0.109030384509722,193.634648685002,"CHH","12:7876313:7878313","CGI_shore"]
[12,7933865,7933959,95,26,0.347300999802445,0.215264128014662,0.132036871787783,114.844021373465,"CHH","Os12g0243050","utr5","Os12g0243050","Similar to Leucine Rich Repeat family protein && - && -"]
[12,8412333,8412437,105,53,0.132984195458439,0.0337379538060834,0.0992462416523558,237.952943442031,"CHH","12:8410510:8412510","CGI_shore"]
[12,8420020,8420195,176,40,0.183457689662951,0.0583091980068392,0.125148491656111,281.154098974972,"CHH","12:8419028:8421028","CGI_shore"]
[12,8559297,8559381,85,10,0.173495070040957,0.0865025368950251,0.0869925331459319,40.4224141181733,"CG","12:8557480:8559480","CGI_shore"]
[12,8680190,8680425,236,54,0.202204684139237,0.0958859296710058,0.106318754468231,261.554322030096,"CHH","12:8679728:8681729","CGI_shore"]
[12,8716421,8716524,104,9,0.123243419837727,0.780546154191114,-0.657302734353387,-62.0121692360693,"CG","12:8716150:8716969","CGI"]
[12,8804656,8804873,218,71,0.135765475687166,0.0538961525997651,0.0818693230874007,371.307553411836,"CHH","12:8802995:8804995","CGI_shore"]
[12,8843415,8843715,301,98,0.176666074562811,0.0887667410557489,0.0878993335070618,456.955724466554,"CHH","12:8841725:8843725","CGI_shore"]
[12,8854977,8855082,106,21,0.220429282782873,0.0468060057447572,0.173623277038116,106.412823251259,"CHH","12:8853856:8855857","CGI_shore"]
[12,9292900,9292960,61,18,0.0368047967166176,0.183799244834229,-0.146994448117611,-97.6072490649522,"CHH","Os12g0263600","promoter","Os12g0263600","Similar to Isoflavone reductase-like protein 1 && sp|P52581|IFRH_LUPAL Isoflavone reductase homolog OS=Lupinus albus OX=3870 PE=2 SV=1 && -"]
[12,9316651,9316865,215,53,0.371790057853017,0.205001142654527,0.16678891519849,282.429655356863,"CHH","Os12g0263800","utr3","Os12g0263800","Similar to cDNA clone:J013002B21, full insert sequence && sp|P52581|IFRH_LUPAL Isoflavone reductase homolog OS=Lupinus albus OX=3870 PE=2 SV=1 && -"]
[12,9351195,9351360,166,21,0.463689001663804,0.236523839777323,0.227165161886481,103.979504292133,"CHG","Os12g0264500","exon","Os12g0264500","Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase) && sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=CHY1 PE=1 SV=1 && PF16113:Enoyl-CoA hydratase/isomerase"]
[12,9353818,9353921,104,18,0.597636931933258,0.77518115136964,-0.177544219436381,-84.760741377736,"CG","12:9352578:9353929","CGI"]
[12,9397892,9398001,110,10,0.390532472491714,0.772965962489983,-0.382433489998269,-72.4448668448374,"CG","Os12g0265100","exon","Os12g0265100","Similar to Pinoresinol-lariciresinol reductase TH2 && sp|P52581|IFRH_LUPAL Isoflavone reductase homolog OS=Lupinus albus OX=3870 PE=2 SV=1 && PF05368:NmrA-like family"]
[12,9480652,9480721,70,26,0.0591856559096075,0.017853826115168,0.0413318297944394,124.651534016328,"CHH","12:9477668:9481138","CGI"]
[12,9869034,9869239,206,56,0.17112552993123,0.0328704534701782,0.138255076461052,253.943224878564,"CHH","12:9867812:9869813","CGI_shore"]
[12,10056929,10057138,210,61,0.225544910006284,0.0923087385316964,0.133236171474587,362.397209972452,"CHH","12:10055654:10057654","CGI_shore"]
[12,10126370,10126462,93,39,0.0196140705896129,0.12725873715288,-0.107644666563267,-187.840014598686,"CHH","12:10124848:10126932","CGI"]
[12,10176651,10176804,154,18,0.450571606030384,0.695059430903096,-0.244487824872712,-85.8945827120043,"CHG","12:10176315:10176744","CGI"]
[12,10318903,10319213,311,56,0.206386466505565,0.0361504301074883,0.170236036398077,311.726317565566,"CHH","12:10318798:10320798","CGI_shore"]
[12,10433398,10433508,111,18,0.127765747892576,0.00877826211603963,0.118987485776536,116.978912556961,"CHH","12:10432299:10434300","CGI_shore"]
[12,10685944,10686001,58,23,0.0509084098993217,0.0116887761333227,0.039219633765999,112.671004778202,"CHH","12:10683994:10685995","CGI_shore"]
[12,10779203,10779369,167,61,0.084819251970893,0.0239016898692591,0.0609175621016338,292.153302913255,"CHH","12:10776667:10784287","CGI"]
[12,10951500,10951626,127,30,0.840838313527678,0.60283488890806,0.238003424619618,134.388816486596,"CG","12:10950815:10952815","CGI_shore"]
[12,10954523,10954702,180,62,0.145311353824279,0.0481206072416042,0.0971907465826747,312.952568116261,"CHH","12:10953039:10955040","CGI_shore"]
[12,10999449,10999642,194,39,8.62435403628466E-3,0.134822390991866,-0.126198036955582,-255.160740884651,"CHH","Os12g0288000","intron","OsSTA278","Similar to cDNA clone:J023146F15, full insert sequence && - && -"]
[12,11126161,11126320,160,23,0.1755335283569,0.0209782552023385,0.154555273154562,136.237646264231,"CHH","12:11124825:11126826","CGI_shore"]
[12,11202550,11202630,81,28,0.105643139649394,0.0356086007429618,0.0700345389064322,137.384256378514,"CHH","Os12g0290150","intron","Os12g0290150","Similar to QS (QUINOLINATE SYNTHASE); 4 iron, 4 sulfur cluster binding / enzyme activator/ protein homodimerization/ quinolinate synthetase A && sp|Q2QTL0|NADA_ORYSJ Quinolinate synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0290150 PE=3 SV=2 && PF02657:Fe-S metabolism associated domain|PF02445:Quinolinate synthetase A protein"]
[12,11202769,11202869,101,34,0.156942375671179,0.0770245697189229,0.0799178059522556,160.347396205838,"CHH","Os12g0290200","promoter","Os12g0290200","Hypothetical protein && - && -"]
[12,11390669,11390852,184,58,0.102345449264305,0.0585053092065031,0.0438401400578019,245.022050462845,"CHH","12:11389003:11391003","CGI_shore"]
[12,11418506,11418691,186,61,0.199842340108912,0.0783523092579387,0.121490030850973,320.128250727303,"CHH","12:11417981:11419981","CGI_shore"]
[12,11432704,11432889,186,56,0.249767368808488,0.13942134789853,0.110346020909958,262.280470711762,"CHH","12:11431304:11433304","CGI_shore"]
[12,11716917,11717108,192,58,0.0436213241804248,0.00551829550403105,0.0381030286763937,295.938638196378,"CHH","Os12g0297400","exon","Os12g0297400","Hypothetical protein && - && -"]
[12,11880544,11880689,146,48,0.093537855505858,0.049597263486372,0.043940592019486,211.405218344372,"CHH","12:11879867:11881868","CGI_shore"]
[12,11927600,11927664,65,7,0.517876013201656,0.230874677380441,0.287001335821215,36.041923454061,"CHG","12:11927119:11928617","CGI"]
[12,12807076,12807135,60,25,0.0643719639888549,0.0140721678255161,0.0502997961633388,130.436363906611,"CHH","12:12804114:12819492","CGI"]
[12,12966672,12966812,141,38,0.235323055640963,0.056828743527201,0.178494312113762,172.706266887581,"CHH","12:12964681:12966682","CGI_shore"]
[12,13443240,13443307,68,6,0.0867043436242202,0.357117859092967,-0.270413515468747,-28.3035568283132,"CHG","12:13442173:13456138","CGI"]
[12,13585120,13585510,391,105,0.233423023667349,0.103890541891442,0.129532481775907,570.362623855399,"CHH","12:13584209:13586209","CGI_shore"]
[12,13678550,13678681,132,52,0.165454225770789,0.0531091525422611,0.112345073228528,256.921271062745,"CHH","12:13677979:13679227","CGI"]
[12,13791495,13791648,154,43,0.10717614900673,0.05653850716749,0.05063764183924,150.227477995352,"CHH","12:13790687:13814118","CGI"]
[12,14215448,14216074,627,112,0.620673705802393,0.872779696550698,-0.252105990748305,-894.388674491154,"CG","12:14211864:14216346","CGI"]
[12,14413445,14413551,107,33,0.601828450614694,0.849676667317032,-0.247848216702338,-142.476187020951,"CG","12:14411553:14413975","CGI"]
[12,14758881,14758949,69,11,0.513542927715228,0.708628944050727,-0.195086016335499,-42.3333003670352,"CHG","12:14758776:14760776","CGI_shore"]
[12,14868976,14869104,129,25,0.258274768687691,0.119198370658687,0.139076398029004,110.197870981606,"CHH","12:14867681:14869682","CGI_shore"]
[12,15132143,15132370,228,92,0.3321065781989,0.134878776067513,0.197227802131387,489.79643680192,"CHH","Os12g0446900","intron","Os12g0446900","Similar to bifunctional dihydrofolate reductase-thymidylate synthase && sp|Q2QRX6|DRTS_ORYSJ Putative bifunctional dihydrofolate reductase-thymidylate synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0446900 PE=3 SV=2 && PF00303:Thymidylate synthase|PF00186:Dihydrofolate reductase"]
[12,15308023,15308235,213,64,0.160040476560399,0.0959072622456082,0.0641332143147912,301.521362277244,"CHH","12:15307366:15308657","CGI"]
[12,15347924,15348013,90,25,0.072131372742758,0.0236602725899722,0.0484711001527858,126.369085316009,"CHH","12:15347831:15349161","CGI"]
[12,15508502,15508715,214,57,0.185274436617038,0.088369766508859,0.0969046701081794,291.067951156124,"CHH","12:15506617:15508617","CGI_shore"]
[12,15813614,15813664,51,13,0.267013799274931,0.0802415227829009,0.18677227649203,93.5820103419662,"CHH","12:15812872:15814873","CGI_shore"]
[12,15813769,15813826,58,15,0.348039144303392,0.144900703873625,0.203138440429767,76.9184741106097,"CHH","12:15813729:15814186","CGI"]
[12,16364112,16364272,161,33,0.36322933278954,0.140445773279127,0.222783559510413,162.670121005328,"CHH","12:16362592:16364592","CGI_shore"]
[12,16491334,16491508,175,56,0.0955387364712484,0.0200841914401681,0.0754545450310803,272.280018155348,"CHH","12:16491348:16493348","CGI_shore"]
[12,17300575,17300658,84,46,0.161791062034253,0.0402533095070181,0.121537752527235,223.048258424198,"CHH","12:17300545:17302546","CGI_shore"]
[12,17401255,17401385,131,35,0.096437072934905,0.230134169826996,-0.133697096892091,-171.280839999361,"CG","12:17401015:17403875","CGI"]
[12,17543638,17543717,80,15,0.510271171927327,0.831267722401558,-0.320996550474231,-86.7630414225869,"CG","12:17542123:17544123","CGI_shore"]
[12,17909537,17909781,245,68,0.435152243733576,0.284845196568294,0.150307047165282,344.487844561601,"CHH","Os12g0484700","promoter","Os12g0484700","Similar to Yippee-like protein CG15309 && sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana OX=3702 GN=At4g27745 PE=3 SV=2 && PF03226:Yippee zinc-binding/DNA-binding /Mis18, centromere assembly"]
[12,18353689,18353824,136,35,0.684242291927228,0.391462993033606,0.292779298893622,200.687090361779,"CG","Os12g0489400","promoter","Os12g0489400","Hypothetical protein && - && -"]
[12,18366838,18366956,119,39,0.145779239029154,0.0418333742864968,0.103945864742658,180.787353970961,"CHH","12:18365276:18367276","CGI_shore"]
[12,18980724,18980782,59,11,0.164367596963453,0.0405202680047611,0.123847328958692,74.6556169994772,"CHH","12:18978899:18980899","CGI_shore"]
[12,19150260,19150375,116,30,0.47828296369639,0.311444587663696,0.166838376032695,194.645225533195,"CG","Os12g0502600","promoter","Os12g0502600","Conserved hypothetical protein && - && -"]
[12,19408567,19408730,164,19,0.138575305821174,0.463209715876577,-0.324634410055402,-118.437752586299,"CHG","12:19408190:19410190","CGI_shore"]
[12,19566397,19566560,164,42,0.10709290251883,0.0207553112721139,0.0863375912467156,231.003144850695,"CHH","12:19565786:19567787","CGI_shore"]
[12,19913321,19913440,120,20,0.250990575282635,0.0838009557282155,0.16718961955442,95.8249355733647,"CHH","Os12g0514450","promoter","Os12g0514450","Hypothetical protein && sp|Q84N38|PVIP_NICBE OBERON-like protein OS=Nicotiana benthamiana OX=4100 GN=PVIP PE=1 SV=1 && PF16312:Coiled-coil region of Oberon|PF07227:PHD - plant homeodomain finger protein"]
[12,20068382,20068708,327,84,0.48182066472989,0.303265303109959,0.178555361619932,505.540363832092,"CG","12:20066567:20068783","CGI"]
[12,20780709,20780829,121,13,0.362507058005617,0.159672275560373,0.202834782445244,70.3592833209821,"CHH","12:20775041:20790045","CGI"]
[12,20845801,20845948,148,65,0.0901452545433814,0.0189880129321362,0.0711572416112452,324.938968511562,"CHH","Os12g0528801","intron","Os12g0528801","Hypothetical gene && - && -"]
[12,21143459,21143565,107,27,0.109021497376012,0.0382035599086701,0.0708179374673417,107.279744745703,"CHH","12:21142570:21144491","CGI"]
[12,21515295,21515358,64,22,0.0386062109695846,0.235296053240543,-0.196689842270958,-133.439909601661,"CHH","12:21514663:21516663","CGI_shore"]
[12,21776345,21776423,79,21,0.0853646102097586,0.188675133211215,-0.103310523001456,-85.5053508647783,"CG","12:21775390:21777168","CGI"]
[12,21904415,21904649,235,71,0.160119755241515,0.092676397695348,0.0674433575461666,300.205540633497,"CHH","12:21902617:21904617","CGI_shore"]
[12,22143999,22144090,92,13,0.734495263794508,0.460266694603282,0.274228569191226,66.1708422736273,"CHG","12:22142891:22157515","CGI"]
[12,22448244,22448416,173,63,0.204330582550515,0.359229866390069,-0.154899283839554,-341.839680805279,"CG","12:22447797:22448971","CGI"]
[12,22937540,22937594,55,13,0.0919605289781638,0.0253618739278804,0.0665986550502834,70.2296425153347,"CHH","12:22937498:22939498","CGI_shore"]
[12,23010106,23010172,67,8,0.386784224818915,0.206816664678022,0.179967560140893,36.6123621695216,"CHG","Os12g0561750","exon","Os12g0561750","Similar to ferroportin protein family && sp|Q2QNK7|S40A2_ORYSJ Solute carrier family 40 member 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0562100 PE=2 SV=1 && -"]
[12,23124545,23124680,136,59,0.208561736791248,0.0882015124164438,0.120360224374804,317.00419256099,"CHH","12:23124530:23126531","CGI_shore"]
[12,23983200,23983254,55,18,0.242646980347328,0.0926377797539933,0.150009200593335,95.6296029076327,"CHH","12:23981799:23983799","CGI_shore"]
[12,23983910,23984032,123,30,0.724912279515474,0.898650470325871,-0.173738190810398,-132.883621540244,"CG","12:23983182:23985182","CGI_shore"]
[12,24063617,24063794,178,19,0.467904469581306,0.743962773244779,-0.276058303663472,-118.723598959325,"CG","Os12g0580700","exon","RING finger protein OsRFPH2-18, RING-H2 protein 18","Similar to RING-H2 finger protein ATL2N && sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 && PF13639:Ring finger domain"]
[12,24211338,24211511,174,49,0.362511010905059,0.12958753215607,0.232923478748988,326.537247718028,"CHH","Os12g0583300","promoter","Os12g0583300","Peptidase aspartic, catalytic domain containing protein && sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis OX=150966 GN=nep1 PE=1 SV=1 && PF14543:Xylanase inhibitor N-terminal|PF14541:Xylanase inhibitor C-terminal"]
[12,25257710,25257794,85,15,0.234325057758693,0.0929904460121971,0.141334611746496,68.0963520792696,"CHG","12:25257290:25271981","CGI"]
[12,25590512,25590604,93,18,0.157532781484246,0.0508425471524188,0.106690234331827,85.450785160108,"CHH","Os12g0606000","promoter","Os12g0606000","Similar to Protein kinase domain containing protein && sp|Q9LXA5|LRK91_ARATH L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 && PF01657:Salt stress response/antifungal|PF00069:Protein kinase domain"]
[12,25713521,25713589,69,15,0.214093231264501,0.0854966676312232,0.128596563633278,68.4891356920898,"CHH","12:25710725:25714205","CGI"]
[12,25728684,25728780,97,32,0.166489851203401,0.258181087277621,-0.0916912360742198,-153.202020172314,"CG","Os12g0609200","exon","Os12g0609200","Conserved hypothetical protein && sp|A2YVF1|TIF6A_ORYSI Protein TIFY 6a OS=Oryza sativa subsp. indica OX=39946 GN=TIFY6A PE=3 SV=1 && -"]
[12,26316172,26316412,241,70,0.166408183951243,0.0501953074888599,0.116212876462384,316.242459631389,"CHH","Os12g0617900","promoter","protein phosphatase with Kelch-like repeat domain 3, Protein phosphatase 132","Similar to Serine/threonine protein phosphatase && sp|Q2QM47|BSL2_ORYSJ Serine/threonine-protein phosphatase BSL2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BSL2 PE=2 SV=2 && PF00149:Calcineurin-like phosphoesterase"]
[12,26338493,26338708,216,54,0.123370337964601,0.031688191153388,0.0916821468112132,272.806465459776,"CHH","Os12g0618300","promoter","Os12g0618300","Similar to GTP-binding protein-like (Fragment) && sp|Q9SJF1|LSG12_ARATH GTPase LSG1-2 OS=Arabidopsis thaliana OX=3702 GN=LSG1-2 PE=1 SV=1 && PF01926:50S ribosome-binding GTPase"]
[12,26420808,26420925,118,46,0.201515851984557,0.0646429829547778,0.136872869029779,179.941254814174,"CG","12:26420490:26421153","CGI"]
[12,26701137,26701204,68,26,0.222383296563753,0.0828908044204131,0.13949249214334,130.811483369688,"CHH","Os12g0625000","intron","CYSTEINE SYNTHASE 1","Similar to Cysteine synthase && sp|Q9XEA6|CYSK1_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica OX=39947 GN=RCS1 PE=2 SV=2 && PF00291:Pyridoxal-phosphate dependent enzyme"]
[12,26900230,26900402,173,52,0.258413973001832,0.140219914843441,0.118194058158391,249.356324120886,"CHH","Os12g0628400","promoter","FATTY ACID 2-HYDROXYLASE 1","Fatty acid 2-hydroxylase, Resistance to rice blast fungus infectio && sp|O48916|FAH1_ARATH Dihydroceramide fatty acyl 2-hydroxylase FAH1 OS=Arabidopsis thaliana OX=3702 GN=FAH1 PE=1 SV=1 && PF04116:Fatty acid hydroxylase superfamily"]
[12,27071983,27072130,148,24,0.215728861063673,0.470887398726236,-0.255158537662564,-122.681194074031,"CHG","Os12g0632401","promoter","Os12g0632401","Hypothetical conserved gene && - && -"]
[12,27141300,27141511,212,69,0.118478104275271,0.178569761532494,-0.0600916572572234,-348.398036618031,"CG","12:27139705:27141706","CGI_shore"]
[12,27144274,27144412,139,43,0.144649672408068,0.0423793876165215,0.102270284791547,197.037476859945,"CHH","12:27140241:27147762","CGI"]
[2,139285,139362,78,33,0.277217830690341,0.123018833983334,0.154198996707007,163.354358365875,"CHH","2:138098:140099","CGI_shore"]
[2,342019,342170,152,48,0.0925864191264033,0.0185743891328301,0.0740120299935733,263.740112672317,"CHH","Os02g0106100","promoter","invertase 3, fructosyl transferase, vacuolar invertase 2","Similar to Fructosyltransferase && sp|Q9FSV7|SST_FESAR Sucrose:sucrose 1-fructosyltransferase OS=Festuca arundinacea OX=4606 GN=1-SST PE=1 SV=1 && PF00251:Glycosyl hydrolases family 32 N-terminal domain|PF08244:Glycosyl hydrolases family 32 C terminal|PF11837:Domain of unknown function (DUF3357)"]
[2,425152,425301,150,45,0.0968732095327331,0.284801655750954,-0.187928446218221,-345.822534635467,"CG","Os02g0107251","exon","Os02g0107251","Conserved hypothetical protein && - && -"]
[2,425362,425646,285,91,0.355852289548217,0.131296269998655,0.224556019549562,709.133846227403,"CG","Os02g0107300","exon","Os02g0107300","Conserved hypothetical protein && - && -"]
[2,428697,428847,151,32,0.347856993118438,0.19066920002326,0.157187793095178,147.922124922364,"CHH","2:428594:430595","CGI_shore"]
[2,459758,459946,189,66,0.334956262661945,0.48023333542445,-0.145277072762505,-340.103755613847,"CG","2:458920:460555","CGI"]
[2,607617,607780,164,22,0.389197334508289,0.71601876878387,-0.326821434275582,-120.993587183259,"CHG","2:606432:608433","CGI_shore"]
[2,611447,611551,105,20,0.8347235878629,0.576031548810684,0.258692039052216,83.476762730772,"CG","2:610840:611602","CGI"]
[2,874301,874351,51,7,0.0563918393428357,0.270344458948845,-0.213952619606009,-33.4386234598469,"CHG","2:874314:874943","CGI"]
[2,1013644,1013803,160,30,0.281556003068359,0.12888871251748,0.152667290550879,152.867518921676,"CHH","2:1011976:1013977","CGI_shore"]
[2,1612418,1612497,80,25,0.217826295925822,0.101656099039894,0.116170196885927,112.472062190857,"CHH","Os02g0131000","promoter","Os02g0131000","Conserved hypothetical protein && - && -"]
[2,1696024,1696356,333,115,0.0244679683073385,0.161233374169558,-0.136765405862219,-951.561718620835,"CG","Os02g0132500","exon","b-ZIP TRANSCRIPTION FACTOR 14","Similar to Common plant regulatory factor 7 && sp|C0Z2L5|BZP44_ARATH bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1 && PF00170:bZIP transcription factor"]
[2,1838216,1838368,153,25,0.161788736295247,0.046337688949586,0.115451047345661,120.082929375816,"CHH","Os02g0134700","intron","Os02g0134700","Hypothetical conserved gene && - && -"]
[2,2281364,2281429,66,18,0.444148839918447,0.786908507815016,-0.342759667896569,-79.3161394092484,"CG","2:2280557:2281391","CGI"]
[2,2350002,2350060,59,15,0.0183493873459877,0.092350343348617,-0.0740009560026293,-69.8202402243321,"CHH","2:2348108:2350109","CGI_shore"]
[2,2448007,2448058,52,12,0.0860216966886043,4.85890347667865E-3,0.0811627932119257,85.3482004428355,"CHH","Os02g0144300","exon","Os02g0144300","Similar to H0114G12.9 protein && - && -"]
[2,2919906,2920034,129,41,0.117928858426778,0.016012346091939,0.101916512334839,181.728447162852,"CHH","2:2918434:2920434","CGI_shore"]
[2,2919906,2920034,129,41,0.117928858426778,0.016012346091939,0.101916512334839,181.728447162852,"CHH","2:2919292:2921293","CGI_shore"]
[2,3208237,3208313,77,19,0.439164119823917,0.330974825922856,0.108189293901061,86.1565078856254,"CHH","2:3203977:3208682","CGI"]
[2,3226358,3226469,112,19,0.222530614000943,0.0541351682504271,0.168395445750516,114.621129448161,"CHH","2:3224413:3228954","CGI"]
[2,3634572,3634709,138,37,0.558510390586429,0.789335188407933,-0.230824797821504,-184.966968930604,"CG","2:3634286:3635059","CGI"]
[2,3841283,3841425,143,60,0.0795779036581087,0.0264615505779229,0.0531163530801858,281.370991053485,"CHH","2:3840951:3841302","CGI"]
[2,4014582,4014640,59,20,0.323107065513046,0.159063698697162,0.164043366815884,110.017058547835,"CHH","2:4012589:4014589","CGI_shore"]
[2,4072303,4072502,200,40,0.260045936535075,0.141849389475381,0.118196547059694,208.173372237093,"CHH","Os02g0174100","promoter","RICE SQUAMOSA PROMOTER-BINDING-LIKE 4","Similar to Isoform 2 of Squamosa promoter-binding-like protein 4 && sp|Q6H509|SPL4_ORYSJ Squamosa promoter-binding-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL4 PE=2 SV=1 && PF03110:SBP domain"]
[2,4536836,4536889,54,16,0.215508969794184,0.0887051880186238,0.12680378177556,78.0034057252192,"CHH","2:4536872:4538872","CGI_shore"]
[2,4560674,4560763,90,39,0.0435003781442665,0.0127349109897372,0.0307654671545293,197.362995192663,"CHH","2:4559961:4561962","CGI_shore"]
[2,4755775,4755974,200,67,0.188674565133384,0.111138051983412,0.0775365131499722,326.620175685681,"CHH","Os02g0185200","exon","Os02g0185200","Cytochrome P450 family protein && sp|A0A0N9HT29|C71BE_SINHE Desmethyl-deoxy-podophyllotoxin synthase OS=Sinopodophyllum hexandrum OX=93608 GN=CYP71BE54 PE=1 SV=1 && PF00067:Cytochrome P450"]
[2,4890816,4890962,147,25,0.353476162785476,0.0395028505777996,0.313973312207676,130.562242977567,"CHH","2:4890249:4892250","CGI_shore"]
[2,5307305,5307390,86,20,0.139897195791141,0.0198341044178289,0.120063091373312,107.65154632717,"CHH","Os02g0194800","promoter","Os02g0194800","C-CAP/cofactor C-like domain domain containing protein && - && PF07986:Tubulin binding cofactor C"]
[2,5403997,5404091,95,19,0.143787720747723,0.0359123524890232,0.1078753682587,112.371045933789,"CHH","Os02g0196600","promoter","HEAVY METAL ATPASE 4","Heavy metal P1B-type ATPase, Cu-transporting ATPase, Control of Cu accumulation in rice grai && sp|Q6H7M3|HMA4_ORYSJ Copper-transporting ATPase HMA4 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA4 PE=1 SV=1 && PF00403:Heavy-metal-associated domain|PF00122:E1-E2 ATPase|PF00702:haloacid dehalogenase-like hydrolase"]
[2,5631984,5632053,70,27,0.0768784873242289,0.0171306599511595,0.0597478273730694,111.197108699065,"CHH","Os02g0200900","promoter","F-box protein 72","Hypothetical conserved gene && sp|Q708Y0|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 && -"]
[2,5631984,5632053,70,27,0.0768784873242289,0.0171306599511595,0.0597478273730694,111.197108699065,"CHH","2:5631930:5632321","CGI"]
[2,5768754,5768823,70,23,0.163867837225385,0.0784353395746731,0.0854324976507121,105.57847428917,"CHH","2:5768806:5770807","CGI_shore"]
[2,5775418,5775629,212,47,0.227553420320941,0.0787952385506052,0.148758181770336,242.540606481184,"CHH","2:5773918:5775918","CGI_shore"]
[2,5981016,5981213,198,33,0.230622607063181,0.0786513534105493,0.151971253652631,173.843495599094,"CHH","2:5979924:5981925","CGI_shore"]
[2,6037613,6037945,333,58,0.401026584207737,0.160810596059328,0.240215988148409,400.303014871315,"CHH","Os02g0207800","promoter","Os02g0207800","Hypothetical protein && sp|Q9C942|CSE_ARATH Caffeoylshikimate esterase OS=Arabidopsis thaliana OX=3702 GN=CSE PE=1 SV=1 && PF12146:Serine aminopeptidase, S33"]
[2,6250401,6250499,99,14,0.153426812388612,0.305449577309734,-0.152022764921122,-65.8555318474081,"CHG","Os02g0211800","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 65","Hypothetical conserved gene && sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1 && PF00069:Protein kinase domain|PF13855:Leucine rich repeat"]
[2,6386256,6386499,244,44,0.429926092071716,0.0553621044197126,0.374563987652004,343.134673252767,"CHH","Os02g0214050","promoter","Os02g0214050","Hypothetical conserved gene && - && -"]
[2,6458970,6459134,165,38,0.185222012360729,0.0514719378603693,0.133750074500359,177.707605250745,"CHH","2:6458955:6460905","CGI"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0215950","promoter","Os02g0215950","Hypothetical gene && sp|Q1MX30|XA21_ORYSI Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 && PF08263:Leucine rich repeat N-terminal domain|PF13855:Leucine rich repeat|PF07714:Protein tyrosine kinase"]
[2,6516977,6517178,202,48,0.17886626761366,0.0236266201054475,0.155239647508212,314.548654917917,"CHH","Os02g0216400","intron","Os02g0216400","Conserved hypothetical protein && - && -"]
[2,6518112,6518492,381,104,0.146854183823288,0.0531205577817103,0.0937336260415781,580.565284554266,"CHH","Os02g0216400","intron","Os02g0216400","Conserved hypothetical protein && - && -"]
[2,6673997,6674047,51,29,0.111265633725282,0.190680779293396,-0.0794151455681138,-134.979231814676,"CG","Os02g0219400","promoter","Os02g0219400","Similar to Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica && sp|P49018|GPI8_YEAST GPI-anchor transamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GPI8 PE=1 SV=1 && PF01650:Peptidase C13 family"]
[2,6826086,6826230,145,23,0.246716849206302,0.475582329638437,-0.228865480432134,-112.1187026376,"CG","2:6825706:6826779","CGI"]
[2,6903167,6903420,254,83,0.619966639838525,0.833502949303518,-0.213536309464993,-496.094791444006,"CG","Os02g0223200","exon","Os02g0223200","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6903412,6903620,209,68,0.320709456400108,0.159378511034452,0.161330945365656,391.843441946746,"CHH","Os02g0223300","utr3","Os02g0223300","Poly(A) polymerase, central domain domain containing protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,7017878,7017963,86,12,0.832220029145941,0.523517247518043,0.308702781627898,59.7449206267362,"CG","Os02g0225000","promoter","Os02g0225000","Similar to cDNA clone:001-044-E12, full insert sequence && sp|O04200|PXN_ARATH Peroxisomal nicotinamide adenine dinucleotide carrier OS=Arabidopsis thaliana OX=3702 GN=PXN PE=1 SV=1 && PF00153:Mitochondrial carrier protein"]
[2,7105590,7105754,165,39,0.068030988623919,0.226807024117301,-0.158776035493382,-168.99049389441,"CG","2:7105110:7106241","CGI"]
[2,7484299,7484420,122,28,0.108367731376325,0.0148708336708087,0.0934968977055159,131.540442773527,"CHH","2:7482676:7484677","CGI_shore"]
[2,7484299,7484420,122,28,0.108367731376325,0.0148708336708087,0.0934968977055159,131.540442773527,"CHH","2:7484230:7486230","CGI_shore"]
[2,7681082,7681168,87,26,0.257441293475608,0.093107870422553,0.164333423053055,134.856052748456,"CHH","Os02g0235701","intron","Os02g0235701","Conserved hypothetical protein && sp|A2YDY2|RL11_ORYSI 60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2 && PF00673:ribosomal L5P family C-terminus"]
[2,7800827,7801063,237,54,0.219644594922199,0.0703071199767173,0.149337474945482,340.263362259886,"CHH","2:7800863:7802863","CGI_shore"]
[2,7934924,7935017,94,23,0.513011032744665,0.833794908261373,-0.320783875516708,-123.375720734546,"CG","2:7934085:7936086","CGI_shore"]
[2,7957030,7957119,90,9,0.686131351825042,0.12816274971189,0.557968602113152,45.6387861001782,"CG","2:7955225:7957226","CGI_shore"]
[2,8100457,8100558,102,34,0.304148231608117,0.139146478798797,0.16500175280932,188.959401001467,"CHH","2:8099816:8101816","CGI_shore"]
[2,8132663,8132785,123,39,0.16613111117893,0.263013157614815,-0.0968820464358848,-137.414699094527,"CHH","2:8132036:8134036","CGI_shore"]
[2,8572871,8572929,59,19,0.111009528498967,0.0123141400622494,0.0986953884367173,89.4292443447668,"CHH","2:8572540:8573819","CGI"]
[2,8662405,8662476,72,19,0.0664316448761555,0.00973897130330978,0.0566926735728457,105.259098383251,"CHH","2:8661185:8663186","CGI_shore"]
[2,8707153,8707273,121,47,0.341016607387757,0.22938498503884,0.111631622348918,207.528992849691,"CHH","2:8706013:8708014","CGI_shore"]
[2,8732146,8732221,76,18,0.055479021158736,2.17274104685778E-3,0.0533062801118782,98.0980506444308,"CHH","Os02g0254700","promoter","SPERMINE SYNTHASE 2","Similar to Spermidine synthase 3 && sp|Q94BN2|SPSY_ARATH Spermine synthase OS=Arabidopsis thaliana OX=3702 GN=SPMS PE=1 SV=1 && -"]
[2,8854805,8854925,121,36,0.365788972016898,0.181043033447406,0.184745938569492,182.00455058204,"CG","Os02g0256800","exon","UCLACYANIN-LIKE PROTEIN 2","Cupredoxin domain containing protein && sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1 && PF02298:Plastocyanin-like domain"]
[2,9009791,9009996,206,78,0.146772811682391,0.0713243099493085,0.0754485017330822,369.261367050555,"CHH","2:9009119:9011119","CGI_shore"]
[2,9130365,9130548,184,41,0.10344863278588,0.0233759139145974,0.0800727188712825,189.288541294647,"CHH","2:9128687:9130687","CGI_shore"]
[2,9131738,9131841,104,33,0.389783971385434,0.221613053287156,0.168170918098278,173.895273569091,"CHH","2:9130568:9132568","CGI_shore"]
[2,9531323,9531420,98,9,0.442580344146349,0.646810746921128,-0.204230402774779,-44.4781163225547,"CG","Os02g0266500","intron","Os02g0266500","tRNA(Ile)-lysidine/2-thiocytidine synthase domain containing protein && sp|Q6ETX0|RSBZ3_ORYSJ bZIP transcription factor RISBZ3 OS=Oryza sativa subsp. japonica OX=39947 GN=RISBZ3 PE=1 SV=1 && -"]
[2,9531323,9531420,98,9,0.442580344146349,0.646810746921128,-0.204230402774779,-44.4781163225547,"CG","Os02g0266500","utr3","Os02g0266500","tRNA(Ile)-lysidine/2-thiocytidine synthase domain containing protein && sp|Q6ETX0|RSBZ3_ORYSJ bZIP transcription factor RISBZ3 OS=Oryza sativa subsp. japonica OX=39947 GN=RISBZ3 PE=1 SV=1 && -"]
[2,9653782,9653943,162,46,0.399167759918018,0.266116555023107,0.133051204894912,220.901488668204,"CHH","Os02g0269400","intron","Os02g0269400","Hypothetical protein && sp|F4HPF1|SBT34_ARATH Subtilisin-like protease SBT3.4 OS=Arabidopsis thaliana OX=3702 GN=SBT3.4 PE=3 SV=1 && -"]
[2,9698061,9698341,281,112,0.629265811742408,0.744852687910963,-0.115586876168555,-586.402640873456,"CG","2:9687544:9703422","CGI"]
[2,9839038,9839200,163,30,0.255492799589104,0.10604290770722,0.149449891881884,154.747370358047,"CG","2:9836864:9839209","CGI"]
[2,9907362,9907442,81,21,0.101597070351168,0.0207014829932351,0.0808955873579326,125.311225882715,"CHH","Os02g0272600","intron","Os02g0272600","Aph-1 family protein && sp|Q8L9G7|APH1_ARATH Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana OX=3702 GN=At2g31440 PE=2 SV=2 && -"]
[2,9967256,9967518,263,60,0.168042722934683,0.0267827075811729,0.14126001535351,348.732744218306,"CHH","2:9966026:9968027","CGI_shore"]
[2,9979707,9979766,60,18,0.169843781140843,0.0861328443192506,0.0837109368215922,76.5085074695825,"CHH","2:9979606:9981607","CGI_shore"]
[2,10319361,10319566,206,73,0.247189330950068,0.13194549350209,0.115243837447978,359.245605390656,"CHH","2:10317504:10319504","CGI_shore"]
[2,10320412,10320578,167,67,0.312400403836946,0.14044094108674,0.171959462750206,418.911681588937,"CHH","2:10319505:10320439","CGI"]
[2,10580727,10580822,96,35,0.0697572929587641,0.0140221495997472,0.0557351433590168,161.265224168184,"CHH","2:10580590:10582591","CGI_shore"]
[2,10673625,10673690,66,24,0.573418606663665,0.808556223729519,-0.235137617065854,-100.839056643573,"CG","2:10673125:10674045","CGI"]
[2,10738031,10738131,101,27,0.491140331427898,0.834633822111349,-0.343493490683451,-132.153705408948,"CG","Os02g0285800","promoter","Os02g0285800","Similar to GTP-binding protein typA (Tyrosine phosphorylated protein A) && sp|F4K410|SVR3_ARATH Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR3 PE=1 SV=1 && PF00009:Elongation factor Tu GTP binding domain|PF00679:Elongation factor G C-terminus|PF03144:Elongation factor Tu domain 2"]
[2,10821039,10821175,137,28,0.560759925036192,0.856876414413055,-0.296116489376862,-127.220209331319,"CG","2:10819998:10821998","CGI_shore"]
[2,11043920,11044120,201,42,0.215596081128248,0.0194250816877149,0.196170999440533,234.620546120531,"CHH","2:11043067:11045067","CGI_shore"]
[2,11071163,11071231,69,9,0.679397890003716,0.413212674778709,0.266185215225007,41.0681585476475,"CHG","2:11069598:11071599","CGI_shore"]
[2,11358365,11358527,163,42,0.241664014022758,0.0555725705377803,0.186091443484977,279.303784615358,"CHH","Os02g0296800","promoter","Os02g0296800","Cobalamin (vitamin B12) biosynthesis CbiX domain containing protein && sp|Q84JH7|SIRB_ARATH Sirohydrochlorin ferrochelatase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIRB PE=1 SV=1 && -"]
[2,11360324,11360513,190,51,0.149833894666567,0.0502411055060303,0.0995927891605371,249.037443281598,"CHH","Os02g0297000","exon","Os02g0297000","Conserved hypothetical protein && - && -"]
[2,11578194,11578289,96,19,0.114634633853205,0.042005857907124,0.0726287759460809,99.9793252457585,"CHH","Os02g0301000","promoter","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1 && PF13920:Zinc finger, C3HC4 type (RING finger)|PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[2,11627113,11627193,81,23,0.0838783275591785,0.0175984679552104,0.0662798596039681,97.9034133831823,"CHH","2:11626650:11628651","CGI_shore"]
[2,11741475,11741671,197,45,0.809359505476494,0.619142742172621,0.190216763303873,197.269245237408,"CG","Os02g0302500","exon","Os02g0302500","Hypothetical conserved gene && - && -"]
[2,12085786,12085968,183,40,0.343659366829266,0.131100661383037,0.212558705446229,203.441704791315,"CHH","2:12083991:12085991","CGI_shore"]
[2,12194443,12194671,229,53,0.258531890985405,0.11288602571353,0.145645865271875,265.900260267086,"CHH","2:12193102:12195102","CGI_shore"]
[2,12359900,12360090,191,29,0.411352229954873,0.0415821560105851,0.369770073944288,203.617101556752,"CHH","2:12358900:12360901","CGI_shore"]
[2,12634425,12634704,280,73,0.32563330607958,0.175760479187531,0.149872826892049,329.596788648678,"CG","Os02g0317800","promoter","Os02g0317800","Similar to pollen Ole e 1 allergen and extensin family protein && - && PF01190:Pollen proteins Ole e I like"]
[2,12634425,12634704,280,73,0.32563330607958,0.175760479187531,0.149872826892049,329.596788648678,"CG","2:12634391:12634831","CGI"]
[2,12940713,12940807,95,20,0.104548204810948,0.0166772960951281,0.0878709087158198,92.3510260887444,"CHH","2:12939624:12941127","CGI"]
[2,12975006,12975181,176,33,0.101567886838055,0.0124427457664638,0.0891251410715908,174.11427595149,"CHH","2:12973137:12975138","CGI_shore"]
[2,13210159,13210227,69,22,0.0954763527020591,0.0397789088342886,0.0556974438677705,90.8983179755767,"CHH","2:13208550:13210550","CGI_shore"]
[2,13231893,13232019,127,40,0.132479788749902,0.0518340957412353,0.0806456930086669,183.544543688106,"CHH","2:13231754:13233755","CGI_shore"]
[2,13404747,13404933,187,41,0.188291330629938,0.0671900231043324,0.121101307525605,198.481588845923,"CHH","2:13379166:13457504","CGI"]
[2,13456248,13456443,196,53,0.192217898912282,0.0526899577189675,0.139527941193314,262.685173457809,"CHH","2:13379166:13457504","CGI"]
[2,13531748,13531839,92,17,0.138206723635071,0.275210544578344,-0.137003820943273,-73.0728541539777,"CHG","2:13528980:13532049","CGI"]
[2,13543108,13543183,76,25,0.0696964342846622,0.0228880803969101,0.0468083538877521,106.451583601221,"CHH","2:13542438:13544439","CGI_shore"]
[2,13837574,13837714,141,37,0.1660994010316,0.0387291040073321,0.127370297024268,186.633466725448,"CHH","2:13837621:13840012","CGI"]
[2,13860286,13860398,113,23,0.783499989176891,0.559202435805989,0.224297553370902,96.8967442273485,"CG","Os02g0435200","promoter","Os02g0435200","Hypothetical conserved gene && - && -"]
[2,13915674,13915753,80,7,0.494526559165359,0.133740314870315,0.360786244295044,30.479340867048,"CHG","2:13913824:13915824","CGI_shore"]
[2,13997865,13998015,151,62,0.125180474297421,0.0624618733162876,0.0627186009811329,264.972403910627,"CHH","2:13997562:13999563","CGI_shore"]
[2,14114382,14114543,162,20,0.446754822504821,0.211018069316346,0.235736753188476,97.9039816069266,"CG","2:14113581:14115581","CGI_shore"]
[2,14220226,14220293,68,17,0.165763361009839,0.290665787829116,-0.124902426819277,-71.7997784006033,"CG","2:14218788:14220789","CGI_shore"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","2:14335230:14337231","CGI_shore"]
[2,14445010,14445076,67,21,0.0944134961513697,0.0391682709571353,0.0552452251942344,82.811051529882,"CHH","2:14443136:14445136","CGI_shore"]
[2,14625754,14625938,185,71,0.0664691044741238,0.0218933030792755,0.0445758013948483,310.117029340252,"CHH","2:14625626:14627627","CGI_shore"]
[2,14835088,14835152,65,11,0.10888372452216,0.0183378378860678,0.0905458866360926,43.6709070863558,"CHG","Os02g0451501","intron","Os02g0451501","Conserved hypothetical protein && - && -"]
[2,15127829,15127903,75,25,0.204471589248904,0.0984404844067958,0.106031104842109,131.063656677444,"CHH","2:15126906:15128907","CGI_shore"]
[2,15419640,15419740,101,42,0.0308041674116165,0.184370937002873,-0.153566769591257,-209.176187938862,"CHH","2:15418226:15420227","CGI_shore"]
[2,15716458,15716552,95,29,0.429176443793681,0.287886841023765,0.141289602769916,139.720485342056,"CHH","2:15715071:15717071","CGI_shore"]
[2,15733378,15733556,179,51,0.701770753931914,0.856559235426035,-0.154788481494121,-204.527331224932,"CG","Os02g0467400","utr5","Os02g0467400","Hypothetical protein && - && -"]
[2,15758057,15758302,246,51,0.304631813078726,0.472779664129661,-0.168147851050935,-246.672849787163,"CG","Os02g0468100","promoter","Os02g0468100","Similar to Wax synthase isoform 1 && sp|Q9FJ75|WAXS4_ARATH Probable long-chain-alcohol O-fatty-acyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=AT4 PE=2 SV=1 && PF13813:Membrane bound O-acyl transferase family"]
[2,15758057,15758302,246,51,0.304631813078726,0.472779664129661,-0.168147851050935,-246.672849787163,"CG","2:15757894:15758368","CGI"]
[2,15995488,15995694,207,32,0.321158576545042,0.727966480373458,-0.406807903828415,-193.251549480531,"CG","2:15995243:15996585","CGI"]
[2,16199888,16200050,163,48,0.152155983683645,0.065519628556138,0.0866363551275072,246.088714756251,"CHH","2:16198536:16200537","CGI_shore"]
[2,16346205,16346335,131,14,0.378074399513135,0.00842950533012254,0.369644894183012,96.9890907358742,"CHH","Os02g0477100","promoter","Os02g0477100","Hypothetical conserved gene && - && -"]
[2,16449941,16450051,111,30,0.081334638214707,0.00792176863684439,0.0734128695778626,143.780551685251,"CHH","2:16448773:16450893","CGI"]
[2,16494071,16494198,128,43,0.115993423942518,0.0513626176654483,0.0646308062770696,189.213485853928,"CHH","2:16493201:16495201","CGI_shore"]
[2,16805467,16805525,59,14,0.17112430553352,0.0649147105286294,0.10620959500489,76.7376120132716,"CHH","2:16803730:16805730","CGI_shore"]
[2,17045515,17045707,193,57,0.196820623282368,0.134519194937238,0.0623014283451299,218.388661850025,"CHH","Os02g0489525","promoter","Os02g0489525","Hypothetical protein && sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=1 SV=1 && -"]
[2,17089451,17089511,61,19,0.110016315950782,0.341457820606627,-0.231441504655845,-106.885709770153,"CHH","2:17089274:17089854","CGI"]
[2,17205410,17205546,137,47,0.245064578659896,0.061366260812637,0.183698317847259,268.641245341758,"CHH","2:17204575:17206576","CGI_shore"]
[2,17205744,17206029,286,83,0.188721556886125,0.032805102445432,0.155916454440693,551.329756357369,"CHH","2:17204575:17206576","CGI_shore"]
[2,17206277,17206347,71,24,0.844534910595736,0.724255758897478,0.120279151698258,109.482556394199,"CG","2:17205532:17206576","CGI"]
[2,17315633,17315803,171,24,0.286848935188829,0.552272969353385,-0.265424034164555,-125.231343306093,"CG","Os02g0494000","intron","Os02g0494000","Ankyrin repeat domain containing protein && - && PF12796:Ankyrin repeats (3 copies)"]
[2,17724962,17725019,58,4,0.58539595571993,0.126596046414702,0.458799909305228,19.679382037694,"CHG","2:17724236:17726236","CGI_shore"]
[2,17890344,17890440,97,32,0.0571947352412715,0.174889977974051,-0.117695242732779,-162.792035604507,"CHH","Os02g0504050","promoter","Os02g0504050","Hypothetical conserved gene && - && -"]
[2,17926308,17930515,4208,50,0.179276956827929,0.0570531835029766,0.122223773324953,363.55571736998,"CHH","2:17925684:17927684","CGI_shore"]
[2,17926308,17930515,4208,50,0.179276956827929,0.0570531835029766,0.122223773324953,363.55571736998,"CHH","2:17926609:17928610","CGI_shore"]
[2,18037376,18037545,170,57,0.154248553498312,0.0205143467080119,0.1337342067903,297.137796083181,"CHH","Os02g0506500","promoter","Os02g0506500","Similar to ubiquitin-activating enzyme E1 domain-containing protein 1 && sp|Q6K6K7|UBA5_ORYSJ Ubiquitin-like modifier-activating enzyme 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0506500 PE=2 SV=1 && PF00899:ThiF family"]
[2,18138582,18138835,254,40,0.17960473186189,0.059479139747952,0.120125592113938,182.305983642389,"CHH","Os02g0507900","promoter","Os02g0507900","Late embryogenesis abundant protein, LEA-14 domain containing protein && - && PF03168:Late embryogenesis abundant protein"]
[2,18251083,18251167,85,29,0.175060479424097,0.05169082795663,0.123369651467467,140.080892775041,"CHH","Os02g0510600","promoter","Os02g0510600","Heavy metal transport/detoxification protein domain containing protein && sp|Q9C5D3|HIP7_ARATH Heavy metal-associated isoprenylated plant protein 7 OS=Arabidopsis thaliana OX=3702 GN=HIPP07 PE=1 SV=1 && PF00403:Heavy-metal-associated domain"]
[2,18301477,18301634,158,49,0.288235927835939,0.144672021065898,0.14356390677004,281.314196575238,"CHH","Os02g0511400","intron","Os02g0511400","Glucose/ribitol dehydrogenase family protein && sp|P0DKC5|HSD1A_ARATH 11-beta-hydroxysteroid dehydrogenase 1A OS=Arabidopsis thaliana OX=3702 GN=HSD1 PE=1 SV=1 && PF00106:short chain dehydrogenase"]
[2,18347304,18347517,214,36,0.221001690634169,0.0679390202201771,0.153062670413992,165.958938536341,"CHH","2:18346632:18348632","CGI_shore"]
[2,18573970,18574231,262,78,0.134994617918394,0.0343154436616047,0.100679174256789,490.788092757066,"CHH","Os02g0515100","promoter","Os02g0515100","Protamine P1 domain containing protein && sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RLP2 PE=2 SV=1 && -"]
[2,18659059,18659348,290,57,0.40459176091509,0.230115994474539,0.174475766440551,304.008257527912,"CHH","Os02g0516901","promoter","Os02g0516901","Hypothetical gene && sp|Q8VZ20|ASR3_ARATH Trihelix transcription factor ASR3 OS=Arabidopsis thaliana OX=3702 GN=ASR3 PE=1 SV=1 && PF13837:Myb/SANT-like DNA-binding domain"]
[2,18800867,18801448,582,136,0.440230850335727,0.251874287537483,0.188356562798243,827.80530794907,"CHH","2:18800636:18802636","CGI_shore"]
[2,19335586,19335645,60,26,0.0621912103308237,0.0149283572418228,0.047262853089001,134.764312430777,"CHH","2:19331123:19347547","CGI"]
[2,19339415,19339509,95,17,0.00672558805354378,0.0778921181721558,-0.071166530118612,-80.031173870565,"CHH","2:19331123:19347547","CGI"]
[2,19503196,19503461,266,79,0.485833118759873,0.34703581504793,0.138797303711943,378.08647475232,"CHH","Os02g0530500","promoter","Os02g0530500","Similar to ZPR3 (LITTLE ZIPPER 3); protein binding && sp|Q56WL5|ZPR4_ARATH Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1 && -"]
[2,19659432,19659547,116,40,0.489417453993306,0.314037041180767,0.175380412812539,206.576266864962,"CHH","2:19658321:19660322","CGI_shore"]
[2,19837517,19837747,231,52,0.300579376109347,0.14718423768819,0.153395138421157,260.823358862408,"CHH","2:19834366:19838813","CGI"]
[2,20053568,20053853,286,66,0.140335141940194,0.0204537370788923,0.119881404861302,342.529539899337,"CHH","2:20053831:20054107","CGI"]
[2,20141345,20141449,105,30,0.403398586450575,0.0274403820708082,0.375958204379767,194.097813571345,"CHH","2:20141412:20143413","CGI_shore"]
[2,20143102,20143193,92,28,0.128902064411561,0.0424959704500484,0.0864060939615123,134.121594922917,"CHH","2:20143069:20143342","CGI"]
[2,20199619,20199714,96,47,0.148070710291988,0.0324937509025616,0.115576959389426,283.784845371433,"CHH","2:20194688:20217985","CGI"]
[2,20479634,20479794,161,48,0.250226469910325,0.0397521405608181,0.210474329349507,345.558846861859,"CHH","2:20477758:20479759","CGI_shore"]
[2,20596755,20596918,164,55,0.0591695827365271,0.00693624167991259,0.0522333410566145,239.403486665096,"CHH","2:20596326:20597414","CGI"]
[2,20672695,20672822,128,41,0.24975953208557,0.114046971015937,0.135712561069633,228.5923692862,"CHH","2:20672545:20672803","CGI"]
[2,21367341,21367514,174,63,0.239241461666879,0.133052042675286,0.106189418991593,305.531930885914,"CHH","2:21365609:21376808","CGI"]
[2,21379684,21379799,116,21,0.469960844586703,0.287927044377512,0.182033800209191,101.09535857626,"CHH","2:21378927:21380927","CGI_shore"]
[2,21465715,21465892,178,46,0.322161841703823,0.186652448443287,0.135509393260536,237.050436315357,"CHH","Os02g0565200","promoter","Os02g0565200","Microsomal signal peptidase 25 kDa subunit family protein && sp|P58684|SPCS2_ARATH Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At2g39960 PE=2 SV=1 && PF06703:Microsomal signal peptidase 25 kDa subunit (SPC25)"]
[2,21610009,21610063,55,16,0.106872874921024,0.0230890732112241,0.0837838017097998,78.6981952760245,"CHH","2:21608366:21620995","CGI"]
[2,21670015,21670159,145,30,0.110790311782597,0.0620593561124765,0.0487309556701204,131.813206837162,"CHH","2:21669928:21670402","CGI"]
[2,21910888,21910968,81,27,0.216894127983827,0.0837970960625789,0.133097031921248,174.374229349935,"CHH","Os02g0572050","promoter","Os02g0572050","Similar to Ent-cassa-12,15-diene synthase && sp|Q00G37|KSL7_ORYSI Ent-cassa-12,15-diene synthase OS=Oryza sativa subsp. indica OX=39946 GN=KSL7 PE=2 SV=2 && PF03936:Terpene synthase family, metal binding domain"]
[2,21925866,21925928,63,20,0.200122032432588,0.0906056056460555,0.109516426786532,97.2620437436569,"CHH","Os02g0572300","intron","Os02g0572300","Similar to RING-H2 finger protein ATL3B && sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 && PF13639:Ring finger domain"]
[2,21961327,21961484,158,58,0.130991091844898,0.0569856809008741,0.074005410944024,270.215392505597,"CHH","Os02g0572900","promoter","Os02g0572900","Zinc finger, C2H2-type domain containing protein && sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0871200 PE=2 SV=1 && -"]
[2,22115140,22115305,166,27,0.428925785262049,0.75814556108675,-0.329219775824701,-136.609829247479,"CG","Os02g0575900","intron","EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX6","Exo70 exocyst complex subunit family protein && - && PF03081:Exo70 exocyst complex subunit"]
[2,22247680,22248235,556,52,0.316695184027333,0.114116543767579,0.202578640259755,254.721007527813,"CHH","2:22246520:22248520","CGI_shore"]
[2,22464335,22464634,300,75,0.233219965674735,0.0861152948114686,0.147104670863266,467.626123696154,"CHH","2:22462785:22464786","CGI_shore"]
[2,22514141,22514254,114,32,0.100155992976841,0.022813956920673,0.0773420360561682,176.58415630587,"CHH","2:22513111:22515111","CGI_shore"]
[2,22535978,22536042,65,19,0.295586403628888,0.154130214442848,0.14145618918604,97.2909887096048,"CHH","Os02g0584300","utr5","Os02g0584300","Conserved hypothetical protein && sp|Q7XTQ5|MEX1_ORYSJ Maltose excess protein 1-like, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0602400 PE=2 SV=2 && -"]
[2,22570681,22570737,57,12,0.582363157221864,0.834383607646778,-0.252020450424914,-57.6554469499413,"CG","Os02g0585650","promoter","Os02g0585650","Hypothetical gene && - && -"]
[2,22579872,22579975,104,22,0.275747000738694,0.142421010456864,0.13332599028183,111.792960548343,"CHH","2:22579685:22581686","CGI_shore"]
[2,22727393,22727497,105,20,0.311772523873677,0.177069606583233,0.134702917290445,95.9043277064015,"CHH","2:22725873:22727873","CGI_shore"]
[2,22744982,22745220,239,78,0.125426794058945,0.0500544500946135,0.0753723439643316,386.202297925648,"CHH","Os02g0589600","utr3","Os02g0589600","Hypothetical conserved gene && - && -"]
[2,22788025,22788204,180,53,0.108504408800789,0.0275068986155541,0.0809975101852353,258.913209484863,"CHH","2:22788078:22788280","CGI"]
[2,22795169,22795483,315,72,0.132932762528293,0.0167966564587635,0.116136106069529,423.87960719654,"CHH","2:22795122:22797122","CGI_shore"]
[2,22911601,22911710,110,33,0.522242719181009,0.37690528553695,0.145337433644059,161.478903151144,"CHH","Os02g0592000","promoter","Os02g0592000","Similar to OSIGBa0106G07.8 protein && sp|Q01IX6|DAO_ORYSI 2-oxoglutarate-dependent dioxygenase DAO OS=Oryza sativa subsp. indica OX=39946 GN=DAO PE=3 SV=1 && PF14226:non-haem dioxygenase in morphine synthesis N-terminal|PF03171:2OG-Fe(II) oxygenase superfamily"]
[2,22959388,22959692,305,94,0.21554775727307,0.105910318774649,0.109637438498421,462.518708764491,"CHH","Os02g0593100","intron","DIAMINE OXIDASE 5","Similar to OSIGBa0106G07.12 protein && sp|Q07121|AMO1_ARTS1 Primary amine oxidase OS=Arthrobacter sp. (strain P1) OX=47915 GN=maoI PE=1 SV=1 && PF01179:Copper amine oxidase, enzyme domain|PF02728:Copper amine oxidase, N3 domain"]
[2,23436574,23436771,198,39,0.423842017092137,0.223689032494568,0.200152984597569,200.291813643246,"CG","Os02g0599700","intron","protein phosphatase 2C19, protein phosphatase 2C 19, protein phosphatase 29","Protein phosphatase 2C, manganese/magnesium aspartate binding site domain containing protein && sp|Q6K5I0|P2C20_ORYSJ Probable protein phosphatase 2C 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0600000 PE=3 SV=2 && -"]
[2,23478407,23478590,184,50,0.268398589081776,0.0466045433017056,0.22179404578007,283.577821539492,"CHH","2:23478231:23480231","CGI_shore"]
[2,23784454,23784545,92,15,0.245217576908313,0.070069921535461,0.175147655372852,73.0677430826512,"CHH","2:23781609:23813292","CGI"]
[2,23965029,23965137,109,29,0.333240609548778,0.17451387011379,0.158726739434989,133.629755116682,"CHH","2:23963682:23965682","CGI_shore"]
[2,24043544,24043648,105,35,0.273119892425636,0.106731820749724,0.166388071675912,169.453187877811,"CHH","2:24043512:24045513","CGI_shore"]
[2,24088663,24088844,182,78,0.142090327250659,0.0572758528223805,0.0848144744282789,357.390020573158,"CHH","2:24087795:24089795","CGI_shore"]
[2,24365147,24365277,131,45,0.112191726831875,0.0450524888212162,0.0671392380106587,235.305558712423,"CHH","2:24363657:24365860","CGI"]
[2,24392743,24392840,98,27,0.141589440372153,0.0326761775572798,0.108913262814874,136.149343445424,"CHH","2:24391688:24393072","CGI"]
[2,24515655,24515724,70,16,0.358712718065796,0.241429987924968,0.117282730140828,70.9766692507653,"CHH","2:24514068:24516068","CGI_shore"]
[2,24540955,24541014,60,7,0.627452654969751,0.43996659403545,0.187486060934301,28.414362584853,"CG","2:24540843:24542844","CGI_shore"]
[2,24648734,24648870,137,41,0.208885524097542,0.109084964753986,0.099800559343556,205.651363945045,"CHH","Os02g0619600","intron","RING finger protein OsRFPH2-15, RING-H2 protein 15","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q9LTA6|WAV3_ARATH E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 && PF13639:Ring finger domain|PF14624:VWA / Hh  protein intein-like|PF00092:von Willebrand factor type A domain"]
[2,24753363,24753487,125,24,0.402549978423884,0.201960727887035,0.200589250536849,121.359211091328,"CHH","Os02g0621850","promoter","Os02g0621850","Hypothetical gene && sp|B5WWZ9|FAO2_LOTJA Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus OX=34305 GN=FAO2 PE=2 SV=1 && -"]
[2,24794688,24794940,253,73,0.137058788609122,0.0216973935399446,0.115361395069177,400.887942652362,"CHH","2:24794728:24796729","CGI_shore"]
[2,24941779,24941935,157,45,0.100670372213294,0.0370857481629725,0.0635846240503219,202.126196122599,"CHH","Os02g0625500","intron","Os02g0625500","Similar to Adenosine kinase-like protein (Fragment) && sp|Q9LZG0|ADK2_ARATH Adenosine kinase 2 OS=Arabidopsis thaliana OX=3702 GN=ADK2 PE=1 SV=1 && PF00294:pfkB family carbohydrate kinase"]
[2,25321689,25321774,86,26,0.34892716267203,0.227318266193424,0.121608896478606,114.851132695354,"CHH","2:25320921:25322921","CGI_shore"]
[2,25344370,25344659,290,73,0.655675926779465,0.368998876887494,0.286677049891971,458.904702406851,"CG","Os02g0632700","exon","Os02g0632700","Conserved hypothetical protein && - && -"]
[2,25573607,25573879,273,60,0.370954803594061,0.179992932764833,0.190961870829228,311.113879088359,"CHH","2:25572300:25574300","CGI_shore"]
[2,25591288,25591347,60,18,0.41234677074316,0.187807783200758,0.224538987542402,89.9813700580318,"CHH","Os02g0638300","promoter","Os02g0638300","Similar to Ferredoxin-thioredoxin reductase, variable chain (FTR-V) (Ferredoxin- thioredoxin reductase subunit A) (FTR-A) && sp|P80680|FTRV_MAIZE Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays OX=4577 PE=1 SV=1 && PF02941:Ferredoxin thioredoxin reductase variable alpha chain"]
[2,25930141,25930237,97,14,0.189979167550737,0.451230014569397,-0.26125084701866,-63.4067013785476,"CHG","2:25929212:25931212","CGI_shore"]
[2,26056783,26056963,181,51,0.12727978692766,0.0413604821052061,0.0859193048224541,224.418902561078,"CHH","2:26041879:26070785","CGI"]
[2,26167851,26168107,257,40,0.254190603526132,0.0164295356721666,0.237761067853965,307.033567640313,"CHH","2:26167291:26169292","CGI_shore"]
[2,26491575,26491701,127,38,0.0594223979958001,0.00824832442633323,0.0511740735694669,167.550858844827,"CHH","2:26490165:26492165","CGI_shore"]
[2,26979918,26980024,107,46,0.132284713363024,0.0666128570523939,0.0656718563106302,208.637319418667,"CHH","Os02g0664400","promoter","Os02g0664400","Hypothetical conserved gene && - && PF08243:SPT2 chromatin protein"]
[2,27016857,27017007,151,48,0.245951524332407,0.109946984283731,0.136004540048675,225.458539661736,"CHH","Os02g0665300","promoter","Serine protease 1, Subtilisin 20, SUBTILISIN 20","Peptidase S8, subtilisin-related domain containing protein && sp|A9QY40|SBT1_LOTJA Subtilisin-like protease 1 OS=Lotus japonicus OX=34305 GN=SBTM1 PE=2 SV=1 && PF05922:Peptidase inhibitor I9|PF00082:Subtilase family|PF17766:Fibronectin type-III domain"]
[2,27139696,27139813,118,47,0.149267986201552,0.0793761579229666,0.069891828278585,195.646624562315,"CHH","2:27138602:27140603","CGI_shore"]
[2,27140249,27140341,93,36,0.234404819442698,0.12722747532424,0.107177344118459,166.773475169102,"CHH","2:27138602:27140603","CGI_shore"]
[2,27343629,27343682,54,24,0.189721994583164,0.0218907025829027,0.167831292000262,107.178354665717,"CHH","Os02g0672200","promoter","ARGONAUTE 1A","Similar to AGO1 homologous protein && sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica OX=39947 GN=AGO1A PE=2 SV=1 && PF08699:Argonaute linker 1 domain|PF16486:N-terminal domain of argonaute|PF16488:Argonaute linker 2 domain|PF02170:PAZ domain|PF12764:Glycine-rich region of argonaut|PF16487:Mid domain of argonaute|PF02171:Piwi domain"]
[2,27450638,27450735,98,24,0.0696254935367973,0.0209240538996147,0.0487014396371825,130.044491779513,"CHH","2:27449796:27451797","CGI_shore"]
[2,27590156,27590214,59,15,0.653734015786792,0.353109629248278,0.300624386538514,62.1903010712983,"CHG","2:27575512:27592849","CGI"]
[2,27661690,27661873,184,71,0.371247901198575,0.16628844799235,0.204959453206224,420.448370383058,"CHH","Os02g0677700","promoter","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 17","Similar to Nucleic acid binding protein && sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 && PF18044:CCCH-type zinc finger"]
[2,27679035,27679164,130,49,0.452615439582795,0.337744667174066,0.11487077240873,217.863772915731,"CG","2:27677196:27679197","CGI_shore"]
[2,27758909,27759028,120,37,0.099196686033675,0.0379745448487175,0.0612221411849575,172.087015480433,"CG","2:27727463:27765065","CGI"]
[2,28152248,28152403,156,42,0.0397453392084201,0.170529852379882,-0.130784513171462,-292.035033101109,"CHH","2:28150650:28162206","CGI"]
[2,28179378,28179540,163,40,0.299668642492378,0.17854537044215,0.121123272050228,207.698947999217,"CHH","Os02g0687600","utr5","Os02g0687600","Hypothetical protein && - && -"]
[2,28336545,28336603,59,28,0.284257054639597,0.196577493056062,0.087679561583535,115.365783919747,"CHH","2:28336062:28338063","CGI_shore"]
[2,28481702,28482075,374,78,0.39560816601969,0.237278135232897,0.158330030786793,445.587607134663,"CHH","Os02g0693500","promoter","Os02g0693500","Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein && sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana OX=3702 GN=At4g09580 PE=1 SV=1 && PF09335:SNARE associated Golgi protein"]
[2,28580070,28580243,174,50,0.349116395058617,0.226586660727689,0.122529734330928,235.518052533506,"CHH","Os02g0695700","promoter","Os02g0695700","Conserved hypothetical protein && - && -"]
[2,28742642,28742731,90,17,0.407968878114585,0.214763385125682,0.193205492988903,90.6432973271356,"CHH","2:28741586:28743587","CGI_shore"]
[2,29209612,29209784,173,53,0.322974107781138,0.19608759960055,0.126886508180587,254.193335701722,"CHH","2:29208073:29210074","CGI_shore"]
[2,29315408,29315501,94,28,0.0638528298185628,0.0110580722712409,0.0527947575473219,147.754860928764,"CHH","2:29315033:29317033","CGI_shore"]
[2,29580530,29580603,74,20,0.178620431801364,0.0258007897831647,0.152819642018199,126.736238577696,"CHH","2:29578982:29580983","CGI_shore"]
[2,29594364,29594479,116,19,0.0861976151501668,0.28839880174337,-0.202201186593203,-90.2292012926606,"CG","Os02g0714000","promoter","Os02g0714000","Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica && sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[2,30108836,30108974,139,31,0.123923699101675,0.0433418719799351,0.0805818271217397,132.715619213699,"CHH","Os02g0724500","intron","OsSTA72","Similar to transporter-related && sp|Q9FG70|NSTU2_ARATH Nucleotide-sugar uncharacterized transporter 2 OS=Arabidopsis thaliana OX=3702 GN=At5g55950 PE=2 SV=1 && PF03151:Triose-phosphate Transporter family"]
[2,30313770,30313904,135,38,0.148175161815582,0.0446375868310172,0.103537574984565,216.818385298059,"CHH","Os02g0728401","promoter","Os02g0728401","Hypothetical gene && sp|Q6YWS8|ASCL2_ORYSJ ASC1-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0728300 PE=3 SV=2 && PF03798:TLC domain"]
[2,30491746,30491798,53,15,0.392718901569237,0.222288317638726,0.170430583930511,89.8292201449827,"CHH","2:30491282:30493283","CGI_shore"]
[2,30632980,30633088,109,19,0.129413667719312,0.244871783717258,-0.115458115997947,-98.6583791505902,"CHH","2:30631645:30633646","CGI_shore"]
[2,30883329,30883562,234,28,0.243031069706998,0.421205518912972,-0.178174449205975,-137.70925248142,"CG","Os02g0739100","utr3","Os02g0739100","Similar to Formin-like protein 16 && sp|A3AB67|FH16_ORYSJ Formin-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=FH16 PE=2 SV=1 && -"]
[2,30945200,30945271,72,18,0.100817973891002,0.0262681784293087,0.0745497954616929,82.1993514389086,"CHH","2:30944285:30946286","CGI_shore"]
[2,31333190,31333411,222,71,0.733925980319865,0.877608038010282,-0.143682057690417,-302.842921840436,"CG","2:31323868:31338336","CGI"]
[2,31495421,31495504,84,24,0.770107918364779,0.404113395040329,0.36599452332445,105.06537802798,"CG","Os02g0749400","exon","Os02g0749400","Hypothetical protein && - && -"]
[2,31855709,31855858,150,54,0.0671909478575133,0.0107174518482885,0.0564734960092248,224.198353936571,"CHH","2:31849499:31900822","CGI"]
[2,31938014,31938232,219,50,0.161991911375277,0.0385217279460485,0.123470183429229,256.598567250306,"CHH","2:31938217:31940217","CGI_shore"]
[2,32114692,32114860,169,40,0.292926834060374,0.0926237298567592,0.200303104203615,222.303452595952,"CHH","2:32109480:32117582","CGI"]
[2,32211692,32211792,101,24,0.0106657017869071,0.190881403416222,-0.180215701629315,-136.551296430432,"CHH","2:32134179:32246077","CGI"]
[2,32252825,32252981,157,30,0.494113829433008,0.15714974342937,0.336964086003637,175.114743026182,"CHH","2:32252547:32254548","CGI_shore"]
[2,32563576,32563683,108,21,0.192531075069808,0.0110387290919518,0.181492345977856,105.153370983535,"CHH","2:32562484:32564485","CGI_shore"]
[2,32867688,32867750,63,22,0.0670811945560005,0.00683147752286386,0.0602497170331367,111.384697651149,"CHH","Os02g0777100","intron","Os02g0777100","DENN domain containing protein && sp|Q6NXD8|DEN5B_DANRE DENN domain-containing protein 5B OS=Danio rerio OX=7955 GN=dennd5b PE=2 SV=2 && PF02141:DENN (AEX-3) domain|PF03456:uDENN domain"]
[2,32975567,32975621,55,19,0.180265472758339,0.274021267995739,-0.0937557952374002,-98.393688900543,"CG","Os02g0778800","exon","Os02g0778800","Hypothetical protein && - && -"]
[2,33112443,33112582,140,31,0.0891560949244316,0.00718551898815056,0.081970575936281,176.909631919379,"CHH","2:33112018:33114019","CGI_shore"]
[2,33639270,33639435,166,24,0.275357077891388,5.51894804608246E-3,0.269838129845305,119.881543782044,"CHH","2:33638141:33640141","CGI_shore"]
[2,33770876,33770943,68,23,0.0350978986432622,0.160053228575089,-0.124955329931827,-116.659315394876,"CHH","Os02g0794500","promoter","TYPE IIB CARBOXYPEPTIDASE","Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A; Serine carboxypeptidase II chain B] && sp|Q9M099|SCP24_ARATH Serine carboxypeptidase 24 OS=Arabidopsis thaliana OX=3702 GN=SCPL24 PE=1 SV=1 && -"]
[2,33812923,33813004,82,23,0.165373466722955,0.0665335837968869,0.0988398829260683,97.8193223234844,"CHH","Os02g0795300","intron","Os02g0795300","Similar to protein binding / zinc ion binding && sp|Q9M2V1|NCA1_ARATH Protein NCA1 OS=Arabidopsis thaliana OX=3702 GN=NCA1 PE=1 SV=1 && -"]
[2,33929149,33929335,187,55,0.00842599116720245,0.113407912892406,-0.104981921725203,-286.229533304774,"CHH","2:33929051:33931051","CGI_shore"]
[2,33963715,33963799,85,26,0.178086069569085,0.115519389336797,0.0625666802322871,131.304316380056,"CHH","2:33963722:33964023","CGI"]
[2,34051845,34051972,128,36,0.301919702960642,0.157744610398471,0.144175092562171,198.622814818742,"CHH","Os02g0799400","promoter","Os02g0799400","Conserved hypothetical protein && - && -"]
[2,34079871,34079982,112,26,0.131951651330443,0.0547030123964745,0.0772486389339686,131.66925376665,"CHH","2:34079322:34081323","CGI_shore"]
[2,34697472,34697606,135,36,0.136560434699686,0.0561634195007389,0.0803970151989472,166.696945962069,"CHH","2:34697132:34699133","CGI_shore"]
[2,34763001,34763051,51,14,0.118796011505286,0.0195473412090786,0.099248670296207,74.6320218873044,"CHH","Os02g0811800","promoter","CINNAMOYL-COA REDUCTASE 10","Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44) && sp|Q6K9A2|CCR1_ORYSJ Cinnamoyl-CoA reductase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCR1 PE=1 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[2,35009996,35010078,83,32,0.316867492350667,0.0716960008561038,0.245171491494563,155.760635765813,"CHH","2:35008153:35010153","CGI_shore"]
[2,35071387,35071473,87,23,0.145754501032183,0.0493105834075322,0.0964439176246513,117.251753038312,"CHH","Os02g0817500","intron","K+ channel beta 1 subunit, K+ Channel beta Subunit","Potassium channel, voltage-dependent, beta subunit, KCNAB-related domain containing protein && sp|Q40648|KCAB_ORYSJ Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica OX=39947 GN=KOB1 PE=1 SV=2 && PF00248:Aldo/keto reductase family"]
[2,35118680,35118777,98,27,0.340562238362098,0.582736218773607,-0.242173980411509,-144.210731765961,"CG","2:35117503:35119503","CGI_shore"]
[2,35174031,35174124,94,18,0.127124771893845,0.416346574327052,-0.289221802433207,-106.834947099053,"CG","Os02g0819450","intron","Os02g0819450","Hypothetical protein && sp|B9F4I8|LPA1_ORYSJ P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPA1 PE=2 SV=1 && -"]
[2,35443332,35443415,84,31,0.108338058546785,0.261566957282777,-0.153228898735992,-139.603584676422,"CG","2:35443052:35443652","CGI"]
[2,35444019,35444089,71,26,0.320865693942771,0.195326820353538,0.125538873589233,121.601831069285,"CHH","Os02g0825301","promoter","F-box protein 122","Hypothetical conserved gene && - && -"]
[2,35572194,35572276,83,19,0.0708494046142332,0.213756139657589,-0.142906735043356,-96.5574101859924,"CHH","Os02g0827600","promoter","Os02g0827600","Protein of unknown function DUF3531 domain containing protein && - && PF12049:Protein of unknown function (DUF3531)"]
[2,35715870,35715928,59,19,0.0147369112945474,0.123748862252003,-0.109011950957455,-105.325296177142,"CHH","2:35715878:35717878","CGI_shore"]
[2,35927999,35928196,198,47,0.219959673745784,0.0969115626428567,0.123048111102927,218.285988330047,"CHH","Os02g0834700","intron","Os02g0834700","Similar to Cell division inhibitor && sp|Q9SJU9|GC1_ARATH Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GC1 PE=2 SV=2 && PF08338:Domain of unknown function (DUF1731)|PF01370:NAD dependent epimerase/dehydratase family"]
[2,35928898,35929088,191,37,0.619556687621138,0.370166749094715,0.249389938526423,196.105462267352,"CG","Os02g0834700","utr3","Os02g0834700","Similar to Cell division inhibitor && sp|Q9SJU9|GC1_ARATH Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GC1 PE=2 SV=2 && PF08338:Domain of unknown function (DUF1731)|PF01370:NAD dependent epimerase/dehydratase family"]
[3,163308,163403,96,20,0.108275446521536,0.0355632259751286,0.0727122205464079,96.7747762794122,"CHH","Os03g0102333","intron","Os03g0102333","Hypothetical conserved gene && sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=cnot1 PE=2 SV=1 && PF12842:Domain of unknown function (DUF3819)|PF16415:CCR4-NOT transcription complex subunit 1 CAF1-binding domain"]
[3,616167,616295,129,54,0.165223507513824,0.0436917377994837,0.12153176971434,274.526121999913,"CHH","Os03g0110600","promoter","Os03g0110600","Similar to LysM domain containing protein, expressed && - && -"]
[3,947297,947472,176,5,0.0973664191125618,0.587028327286582,-0.48966190817402,-25.1465020789686,"CG","3:946784:948785","CGI_shore"]
[3,1176563,1176639,77,19,0.0962511691730787,0.00465968545643016,0.0915914837166485,96.3376818245004,"CHH","3:1176088:1178089","CGI_shore"]
[3,1525543,1525708,166,56,0.150447753056407,0.062792330035735,0.0876554230206724,270.714931946495,"CHH","Os03g0127000","utr3","Os03g0127000","Similar to cell growth defect factor 2 && - && -"]
[3,1533752,1533857,106,31,0.430793759161723,0.239083695325633,0.19171006383609,152.9522651547,"CHH","3:1532988:1534989","CGI_shore"]
[3,1710939,1711072,134,35,0.141846265001415,0.050087379414618,0.0917588855867966,160.937351402086,"CHH","Os03g0130200","intron","Os03g0130200","Conserved hypothetical protein && sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=AAE12 PE=2 SV=1 && PF00501:AMP-binding enzyme|PF00069:Protein kinase domain"]
[3,1729023,1729126,104,35,0.102995384155002,0.036968742879906,0.0660266412750963,137.047314953498,"CHH","Os03g0130500","promoter","Os03g0130500","EF hand domain containing protein && sp|B3LF48|EHD2_ARATH EH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EHD2 PE=1 SV=1 && PF12763:Cytoskeletal-regulatory complex EF hand"]
[3,1797249,1797328,80,27,0.430436729041122,0.291759251893876,0.138677477147246,140.802258577337,"CHH","3:1795860:1798127","CGI"]
[3,1996753,1997006,254,63,0.324012427844088,0.0887461937376987,0.235266234106389,455.108844609337,"CHH","Os03g0135800","promoter","Os03g0135800","Conserved hypothetical protein && - && -"]
[3,2117426,2117685,260,110,0.191374873963928,0.0461237079037705,0.145251166060158,600.206228776316,"CHH","3:2116807:2118807","CGI_shore"]
[3,2280578,2280717,140,50,0.0100092477824508,0.0814326942208981,-0.0714234464384473,-265.253692970258,"CHH","3:2272377:2292507","CGI"]
[3,2612318,2612386,69,12,0.254036094602863,0.101948287977185,0.152087806625678,78.7539459085561,"CHH","3:2611905:2613906","CGI_shore"]
[3,2792493,2792760,268,31,0.820935021597743,0.48038425835397,0.340550763243773,137.346154525571,"CG","3:2792195:2792665","CGI"]
[3,2941361,2941412,52,4,0.067995312441866,0.316624604192093,-0.248629291750227,-18.4039200780014,"CHG","Os03g0153100","intron","Os03g0153100","Similar to FAD binding domain containing protein, expressed && sp|O81816|MO2_ARATH Monooxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=MO2 PE=2 SV=1 && PF01494:FAD binding domain"]
[3,2972314,2972374,61,16,0.130655336383033,0.0480104360281248,0.0826449003549082,79.5821689099708,"CHH","3:2971234:2973235","CGI_shore"]
[3,3253285,3253340,56,12,0.536075352690603,0.801646130967879,-0.265570778277275,-56.2674299859495,"CG","Os03g0161000","utr5","Os03g0161000","Conserved hypothetical protein && - && -"]
[3,3315523,3315616,94,30,0.2043154204503,0.0446094121216112,0.159706008328689,143.932477292084,"CHH","Os03g0161500","intron","Os03g0161500","EGF domain containing protein && - && -"]
[3,3404255,3404310,56,16,0.0989240922116056,0.0140024283547343,0.0849216638568713,79.9447837396499,"CHH","Os03g0162725","intron","Os03g0162725","Hypothetical protein && sp|Q7XEM4|KCS20_ORYSJ Probable 3-ketoacyl-CoA synthase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=KCS20 PE=1 SV=1 && PF08392:FAE1/Type III polyketide synthase-like protein|PF08541:3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal"]
[3,3557589,3557727,139,26,0.260527282429234,0.517156153064748,-0.256628870635514,-132.766195430076,"CHG","Os03g0165900","intron","Os03g0165900","Tetratricopeptide-like helical domain containing protein && sp|Q8L730|SDI2_ARATH Protein SULFUR DEFICIENCY-INDUCED 2 OS=Arabidopsis thaliana OX=3702 GN=At1g04770 PE=2 SV=1 && -"]
[3,3707559,3707742,184,43,0.135047028410486,0.443008812813453,-0.307961784402967,-298.512510976044,"CG","Os03g0168800","exon","Os03g0168800","Hypothetical conserved gene && - && PF12620:Protein of unknown function (DUF3778)"]
[3,3746696,3746851,156,51,0.0948886365303953,0.0169763752991099,0.0779122612312854,216.598813163865,"CHH","3:3746280:3748281","CGI_shore"]
[3,4109898,4110089,192,39,0.227751666539694,0.0787099454238692,0.149041721115825,212.870180724119,"CHH","3:4109423:4111423","CGI_shore"]
[3,4221368,4221512,145,43,0.139848397967905,0.049541146773926,0.0903072511939789,204.992762687606,"CHH","3:4221343:4223344","CGI_shore"]
[3,4387471,4387659,189,34,0.238725835546297,0.0862937275226224,0.152432108023675,242.693733210648,"CHH","Os03g0183600","intron","ALANINE AMINOTRANSFERASE 2","Similar to Alanine aminotransferase && sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum OX=4540 PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[3,4480195,4480292,98,17,0.586036067895087,0.356484337374577,0.22955173052051,91.2179032732724,"CG","3:4479813:4483526","CGI"]
[3,4640242,4640411,170,41,0.174629527139097,0.0564790260263267,0.118150501112771,208.349062612459,"CHH","3:4639058:4641059","CGI_shore"]
[3,4742033,4742099,67,16,0.00529718553855933,0.104709324606203,-0.0994121390676436,-87.0191185218245,"CHH","3:4740574:4751243","CGI"]
[3,5090679,5090856,178,50,0.0902509309911813,0.027082733992188,0.0631681969989933,234.882078257673,"CHH","Os03g0197000","promoter","Os03g0197000","Di-trans-poly-cis-decaprenylcistransferase-like domain containing protein && sp|Q12063|UPPS_YEAST Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NUS1 PE=1 SV=1 && -"]
[3,5252461,5252620,160,30,0.301035189269139,0.152091696944262,0.148943492324877,148.469117601771,"CHH","3:5240998:5263493","CGI"]
[3,5593522,5593693,172,28,0.277128909873273,3.33878549037214E-3,0.273790124382901,220.199382763192,"CHH","3:5589962:5609714","CGI"]
[3,5746436,5746612,177,36,0.363842816391749,0.0490145911943221,0.314828225197427,305.463735132034,"CHH","3:5745828:5747828","CGI_shore"]
[3,5884909,5884998,90,18,0.110270198982565,0.00847450123714387,0.101795697745421,83.4517096105273,"CHH","3:5883136:5885137","CGI_shore"]
[3,6201207,6201332,126,27,0.506727126260487,0.78116266685252,-0.274435540592033,-123.340608225761,"CG","3:6200678:6203632","CGI"]
[3,6446283,6446482,200,60,0.217506937617236,0.0986121554414901,0.118894782175746,299.086373036964,"CHH","Os03g0223100","promoter","Os03g0223100","Cytochrome P450 family protein && sp|P98188|C94A2_VICSA Cytochrome P450 94A2 OS=Vicia sativa OX=3908 GN=CYP94A2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[3,6555345,6555469,125,38,0.380839339360878,0.22809149957012,0.152747839790759,188.825527269725,"CHH","3:6554636:6556636","CGI_shore"]
[3,6749012,6749256,245,102,0.323657851895306,0.18861721290455,0.135040638990757,552.405030132748,"CHH","3:6747206:6749206","CGI_shore"]
[3,6850940,6851009,70,13,0.852452940868148,0.588781133806734,0.263671807061414,59.9496783204357,"CG","3:6850206:6851058","CGI"]
[3,6877897,6877953,57,25,0.0569818328539522,0.00713100220646448,0.0498508306474877,124.973833508761,"CHH","3:6877075:6879213","CGI"]
[3,6952279,6952485,207,65,0.234638743517597,0.406389490197424,-0.171750746679828,-353.031110328467,"CHH","Os03g0231750","promoter","Os03g0231750","Hypothetical protein && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && -"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","Os03g0231850","exon","Os03g0231850","Hypothetical protein && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && -"]
[3,7239242,7239331,90,21,0.185537773687191,0.0499021946837615,0.13563557900343,167.345197013982,"CHH","Os03g0237267","promoter","Os03g0237267","Hypothetical protein && sp|Q9FRH4|IDD16_ARATH Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1 && -"]
[3,7547917,7547968,52,17,0.0747848707428891,0.00528217776945483,0.0695026929734342,81.300418837479,"CHH","3:7533374:7565887","CGI"]
[3,7738087,7738399,313,68,0.306559034199822,0.0790757741088646,0.227483260090958,443.75161226477,"CHH","3:7737244:7739245","CGI_shore"]
[3,8207685,8207795,111,29,0.152912080846689,0.0111277659121999,0.141784314934489,157.132742568511,"CHH","Os03g0255200","exon","Os03g0255200","Heat shock protein DnaJ, N-terminal domain containing protein && sp|Q9FN50|CPP1_ARATH Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPP1 PE=1 SV=1 && PF11833:Protein CHAPERONE-LIKE PROTEIN OF POR1-like"]
[3,8358986,8359038,53,14,0.129921264441042,0.0451407784173397,0.0847804860237028,81.8546381891153,"CHH","3:8358205:8360205","CGI_shore"]
[3,8729099,8729263,165,43,0.0834926085166098,0.0118302609174065,0.0716623475992033,194.931701405344,"CHH","3:8728424:8730424","CGI_shore"]
[3,8787831,8787988,158,45,0.217790995704224,0.0874397005546493,0.130351295149575,231.272828359639,"CHH","Os03g0265800","promoter","Os03g0265800","Protein of unknown function DUF2253, membrane domain containing protein && - && PF06127:Protein of unknown function (DUF962)"]
[3,9015095,9015187,93,24,0.199770442981079,0.0772927239618018,0.122477719019277,140.534599184076,"CHH","3:8965743:9069413","CGI"]
[3,9131502,9131573,72,22,0.205084100994172,0.0707409943551994,0.134343106638973,102.245608494572,"CHH","3:9123870:9133338","CGI"]
[3,9280737,9280837,101,14,0.256619730728974,0.00816042979290332,0.248459300936071,68.9009649961691,"CHH","3:9276549:9281891","CGI"]
[3,9388492,9388573,82,18,0.414595242561128,0.32669882646654,0.0878964160945878,69.1752265857456,"CHH","Os03g0276900","promoter","Os03g0276900","Similar to BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein && sp|Q9FLD7|GT14A_ARATH Beta-glucuronosyltransferase GlcAT14A OS=Arabidopsis thaliana OX=3702 GN=GLCAT14A PE=2 SV=1 && PF02485:Core-2/I-Branching enzyme"]
[3,9420539,9420612,74,20,0.11678209622789,0.0107024461838336,0.106079650044057,88.4326478225884,"CHH","Os03g0277650","promoter","Os03g0277650","Similar to (clone wusl1032) mRNA sequence && sp|Q9LV60|CRR55_ARATH Cysteine-rich repeat secretory protein 55 OS=Arabidopsis thaliana OX=3702 GN=CRRSP55 PE=2 SV=1 && PF01657:Salt stress response/antifungal"]
[3,9741351,9741493,143,28,0.194775442555934,0.0726577475103996,0.122117695045534,192.604740963372,"CHH","3:9739575:9741576","CGI_shore"]
[3,9942981,9943082,102,27,0.130424155112833,0.0323292802858146,0.0980948748270182,146.764849484042,"CHH","3:9942677:9944677","CGI_shore"]
[3,10041523,10041699,177,32,0.199657472717827,0.0237866301607466,0.17587084255708,165.913324903265,"CHH","Os03g0289800","intron","Os03g0289800","Similar to Leucoanthocyanidin dioxygenase-like protein && sp|Q9SRM3|JOX1_ARATH Jasmonate-induced oxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=JOX1 PE=1 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[3,10125073,10125235,163,29,0.414295734062723,0.0932227734840828,0.32107296057864,176.845576640023,"CHH","Os03g0291500","promoter","ASPARAGINE SYNTHETASE 1","Asparagine synthetase, Biosynthesis of asparagine following the supply of ammoniu && sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0291500 PE=2 SV=1 && PF00733:Asparagine synthase|PF13537:Glutamine amidotransferase domain"]
[3,10224070,10224211,142,32,0.843818485490828,0.613219130150143,0.230599355340685,143.837124419538,"CG","Os03g0293600","utr5","Os03g0293600","Hypothetical protein && - && -"]
[3,10644155,10644285,131,45,0.181033294395689,0.031505069010035,0.149528225385654,248.508427299164,"CG","Os03g0301900","TSS","Os03g0301900","Similar to Plastidic phosphate translocator-like protein1 && sp|Q3E6T0|PT525_ARATH Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana OX=3702 GN=At5g25400 PE=2 SV=1 && -"]
[3,10815116,10815532,417,146,0.173824863033925,0.0745094485556476,0.099315414478277,751.829713704748,"CHH","3:10815390:10817391","CGI_shore"]
[3,11046383,11046508,126,44,0.0987164067977435,0.0103310067842541,0.0883854000134894,208.900484520121,"CHH","3:11045968:11047968","CGI_shore"]
[3,11357020,11357127,108,36,0.134874147790274,0.041944030069482,0.0929301177207917,186.453600823816,"CHH","3:11355812:11357813","CGI_shore"]
[3,11620161,11620259,99,49,0.0761018852870763,0.0236458994373886,0.0524559858496877,246.835651540158,"CHH","3:11618332:11620332","CGI_shore"]
[3,11739438,11739632,195,46,0.226467431706699,0.0652335270109581,0.161233904695741,208.883867980103,"CHH","3:11738888:11740888","CGI_shore"]
[3,11814533,11814851,319,89,0.184351778832917,0.0746852664628558,0.109666512370061,423.925132772788,"CHH","Os03g0324900","promoter","Os03g0324900","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 && PF14369:zinc-ribbon|PF13639:Ring finger domain"]
[3,11987624,11987697,74,24,0.23312524723245,0.132788173587302,0.100337073645148,128.830650155856,"CHH","3:11987693:11989694","CGI_shore"]
[3,12033737,12033925,189,49,0.117363976056207,0.263011033014212,-0.145647056958005,-257.304541753743,"CHH","3:12032965:12034965","CGI_shore"]
[3,12159603,12159754,152,64,0.239870390053712,0.108775268167401,0.131095121886312,359.132098586451,"CHH","3:12157822:12159823","CGI_shore"]
[3,12255723,12255812,90,7,0.03434813489166,0.494929105107917,-0.460580970216257,-45.1821047258607,"CHG","3:12255491:12257491","CGI_shore"]
[3,12407284,12407409,126,33,0.316499555030492,0.171045881048292,0.1454536739822,182.807938600134,"CHH","Os03g0335300","intron","Os03g0335300","Similar to Vacuolar sorting receptor homolog (Fragment) && sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana OX=3702 GN=VSR2 PE=2 SV=1 && PF02225:PA domain"]
[3,12612398,12612489,92,13,0.183050448159602,0.0524692880277896,0.130581160131812,88.9532370372513,"CHH","Os03g0339300","intron","class III peroxidase 41, peroxidase 8.1","Hypothetical conserved gene && sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays OX=4577 GN=PER70 PE=1 SV=1 && PF00141:Peroxidase"]
[3,12651206,12651286,81,23,0.147249253291126,0.0947434805758394,0.0525057727152867,83.9682723905098,"CHH","3:12649707:12651708","CGI_shore"]
[3,12651206,12651286,81,23,0.147249253291126,0.0947434805758394,0.0525057727152867,83.9682723905098,"CHH","3:12650671:12652671","CGI_shore"]
[3,12940018,12940207,190,45,0.0374160622351835,0.195337666784591,-0.157921604549407,-240.951050721227,"CHH","3:12938231:12940232","CGI_shore"]
[3,13167347,13167401,55,5,0.509974937505573,0.749387667280185,-0.239412729774612,-23.1016931792112,"CG","Os03g0351400","intron","tubby-like protein 14, tubby-like protein 6, F-box protein 139","Similar to Tubby-like protein 3 && sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1 && PF01167:Tub family"]
[3,13314655,13314789,135,43,0.422675739946841,0.25654661306469,0.166129126882151,219.443464340242,"CHH","3:13314272:13316272","CGI_shore"]
[3,13681525,13681653,129,35,0.0590385343107747,0.252805302642908,-0.193766768332133,-239.737480087679,"CHH","3:13680406:13682407","CGI_shore"]
[3,13798191,13798283,93,25,0.167961812558212,0.0565800031488578,0.111381809409354,126.34566138468,"CHH","Os03g0356900","intron","ADENOSINE PHOSPHATE ISOPENTENYLTRANSFERASE 2","tRNA isopentenyltransferase family protein && sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IPT3 PE=1 SV=1 && PF01715:IPP transferase"]
[3,14079793,14080058,266,81,0.231656026632973,0.0369496852394516,0.194706341393522,543.066876147825,"CHH","3:14079642:14080487","CGI"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","Os03g0365250","promoter","Os03g0365250","Conserved hypothetical protein && - && -"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","3:14262293:14264293","CGI_shore"]
[3,14326598,14326699,102,15,0.49147168006935,0.150834008399876,0.340637671669474,87.9222905399034,"CHH","Os03g0366350","promoter","F-box protein 141","Similar to F-box domain containing protein && sp|Q9LFW0|FB257_ARATH Putative F-box protein At5g15660 OS=Arabidopsis thaliana OX=3702 GN=At5g15660 PE=4 SV=1 && PF00646:F-box domain"]
[3,14450199,14450261,63,24,0.0204117579632938,0.139057495074378,-0.118645737111084,-110.40082150403,"CHH","3:14443838:14450514","CGI"]
[3,14551725,14552136,412,77,0.343280031900635,0.158136350045137,0.185143681855498,431.840662419769,"CHH","Os03g0370800","promoter","COPPER TRANSPORTER 3","Ctr copper transporter family protein && sp|Q10KT6|COPT4_ORYSJ Copper transporter 4 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT4 PE=3 SV=1 && PF04145:Ctr copper transporter family"]
[3,14647109,14647188,80,24,0.0258251022494766,0.120169759260562,-0.0943446570110854,-87.041774047911,"CHH","3:14647180:14649180","CGI_shore"]
[3,14802113,14802198,86,18,0.572196714066799,0.794553863434,-0.222357149367202,-98.1235697319988,"CG","3:14801477:14803478","CGI_shore"]
[3,14840674,14840762,89,17,0.242321950740882,0.119754626899438,0.122567323841444,81.0167171925644,"CHH","3:14838982:14840982","CGI_shore"]
[3,14889411,14889505,95,29,0.0402101830197924,2.47293272209751E-3,0.0377372502976949,153.599737857589,"CHH","3:14889305:14891305","CGI_shore"]
[3,14965207,14965268,62,5,0.271980864412032,0.104329171211194,0.167651693200838,22.2870482029337,"CHG","3:14964746:14966747","CGI_shore"]
[3,15114368,15114450,83,17,0.416412537694319,0.144998371820979,0.27141416587334,69.6302189219549,"CHH","3:15113143:15115143","CGI_shore"]
[3,15155765,15155905,141,47,0.229555724953404,0.133958339524541,0.0955973854288634,216.790106743528,"CHH","3:15154838:15156838","CGI_shore"]
[3,15253482,15253647,166,27,0.060975924998278,0.35724327702465,-0.296267352026371,-162.379088937197,"CHH","3:15253161:15255162","CGI_shore"]
[3,15391228,15391293,66,16,0.183548445520825,7.97230999382589E-3,0.175576135526999,75.0912177104192,"CHH","Os03g0386600","intron","Os03g0386600","Hypothetical protein && sp|P52711|CBP23_HORVU Serine carboxypeptidase II-3 OS=Hordeum vulgare OX=4513 GN=CXP;2-3 PE=2 SV=1 && -"]
[3,15675143,15675421,279,65,0.410365517492473,0.215393948772401,0.194971568720072,379.131239477707,"CHH","Os03g0391400","promoter","PHOSPHOLIPASE D alpha 6","Similar to Phospholipase D nu-2 (Fragment) && sp|Q43007|PLDA1_ORYSJ Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PLD1 PE=1 SV=2 && PF00614:Phospholipase D Active site motif|PF12357:Phospholipase D C terminal"]
[3,15971441,15971533,93,30,0.20149578859605,0.106874680889999,0.0946211077060514,141.134714784985,"CHH","Os03g0395700","promoter","Os03g0395700","Conserved hypothetical protein && - && -"]
[3,16123888,16124010,123,33,0.0726178046570826,0.00265817986561935,0.0699596247914633,167.2987818399,"CHH","3:16122307:16124308","CGI_shore"]
[3,16142809,16143804,996,29,0.261201260333472,0.0819664186760728,0.179234841657399,164.715354188109,"CHH","3:16141098:16143099","CGI_shore"]
[3,16452835,16452908,74,31,0.192581490346656,0.0581547155542403,0.134426774792416,241.75187913854,"CHH","3:16451333:16453333","CGI_shore"]
[3,16457269,16457332,64,18,0.195364413474499,0.0828143552000519,0.112550058274447,88.2593754842846,"CHH","Os03g0403600","promoter","Os03g0403600","von Willebrand factor, type A domain containing protein && - && PF00092:von Willebrand factor type A domain|PF14624:VWA / Hh  protein intein-like"]
[3,16578323,16578417,95,18,0.200507021857829,0.0908089681643207,0.109698053693508,95.0592525700543,"CHH","Os03g0405100","promoter","Os03g0405100","Ubiquinone biosynthesis protein COQ9 domain containing protein && sp|Q86HS0|COQ9_DICDI Probable ubiquinone biosynthesis protein coq9, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=coq9 PE=3 SV=2 && PF08511:COQ9"]
[3,16685406,16685510,105,36,0.124362977914369,0.0595673359454345,0.0647956419689348,156.827695968362,"CHH","3:16684922:16686922","CGI_shore"]
[3,16748649,16748735,87,19,0.794898632680024,0.487445005286195,0.307453627393829,94.8630716373374,"CG","3:16747788:16749788","CGI_shore"]
[3,16914578,16914656,79,10,0.242569350081444,0.00611892038390295,0.236450429697541,70.1545325669448,"CHH","3:16913688:16915689","CGI_shore"]
[3,17007080,17007250,171,52,0.256861936719401,0.131241134396377,0.125620802323024,273.644166105763,"CHH","3:17007054:17009055","CGI_shore"]
[3,17007080,17007250,171,52,0.256861936719401,0.131241134396377,0.125620802323024,273.644166105763,"CHH","3:17006214:17008214","CGI_shore"]
[3,17189423,17189515,93,23,0.0873567758396024,0.0237522597273669,0.0636045161122355,98.2308289763746,"CHH","3:17188509:17190510","CGI_shore"]
[3,17203852,17203995,144,61,0.213166659319062,0.106325672154036,0.106840987165026,320.245824916435,"CHH","3:17202592:17204698","CGI"]
[3,17496041,17496163,123,13,0.306045477234176,0.666155915310476,-0.3601104380763,-60.7648653682252,"CHG","3:17458409:17513428","CGI"]
[3,17560488,17560603,116,42,0.215574681479057,0.103949139624883,0.111625541854174,221.646504179747,"CHH","3:17558700:17560700","CGI_shore"]
[3,17596296,17596529,234,78,0.197497818021879,0.0751131489498954,0.122384669071984,400.459548403006,"CHH","3:17594923:17596924","CGI_shore"]
[3,17666022,17666091,70,23,0.44416676570023,0.343776688736146,0.100390076964084,95.2767598950391,"CHH","3:17664444:17666444","CGI_shore"]
[3,18022069,18022388,320,146,0.105814253383016,0.0447342121789872,0.061080041204029,677.763561327243,"CHH","3:18021695:18023695","CGI_shore"]
[3,18029778,18029918,141,40,0.216388675801735,0.107090928191668,0.109297747610067,174.817161945776,"CHH","3:18029743:18030198","CGI"]
[3,18236604,18236666,63,19,0.0974395297788955,0.0109590195192897,0.0864805102596058,88.1165033460753,"CHH","3:18236549:18238549","CGI_shore"]
[3,18440441,18440498,58,18,0.012246009594373,0.067224677223326,-0.054978667628953,-104.164328945819,"CHH","3:18439891:18441892","CGI_shore"]
[3,18505626,18505723,98,14,0.00606311839032247,0.105890662206545,-0.0998275438162221,-78.7375604388928,"CHH","3:18504850:18506850","CGI_shore"]
[3,18551034,18551089,56,18,0.161447186300756,0.0725950409113757,0.0888521453893804,83.7514644852579,"CHH","3:18550139:18552139","CGI_shore"]
[3,18771428,18771629,202,27,0.136902513174542,0.0395177114469624,0.09738480172758,113.625488496446,"CHH","Os03g0442800","promoter","Os03g0442800","Hypothetical gene && - && -"]
[3,19009303,19009567,265,72,0.227705119809344,0.0732553367801243,0.154449783029219,446.486724396043,"CHH","3:19007795:19009796","CGI_shore"]
[3,19204433,19204602,170,36,0.203074758938481,0.020103567704114,0.182971191234367,209.158596551629,"CHH","Os03g0448700","promoter","Os03g0448700","Interferon-related developmental regulator domain containing protein && sp|Q5S1U6|IFRD1_PIG Interferon-related developmental regulator 1 OS=Sus scrofa OX=9823 GN=IFRD1 PE=2 SV=1 && PF05004:Interferon-related developmental regulator (IFRD)"]
[3,19268249,19268351,103,39,0.141784304522422,0.0476010453366355,0.0941832591857864,187.542021022,"CHH","3:19267456:19277021","CGI"]
[3,19714157,19714220,64,21,0.177232990089409,0.0989433737995455,0.0782896162898638,95.3786544598482,"CHH","3:19712591:19714591","CGI_shore"]
[3,19719696,19719839,144,25,0.648068199657689,0.830780311597667,-0.182712111939979,-92.4450408761315,"CG","3:19717394:19728276","CGI"]
[3,20144158,20144315,158,51,0.0195632005774121,0.0942968799168382,-0.0747336793394261,-226.844389314435,"CHH","3:20144103:20144810","CGI"]
[3,20260650,20260832,183,57,0.145381202244944,0.0581205108842828,0.0872606913606611,261.850455799745,"CHH","3:20260138:20262139","CGI_shore"]
[3,20482463,20482520,58,19,0.149273896471466,0.0545024249561858,0.0947714715152803,87.0812985289478,"CHH","3:20480739:20482740","CGI_shore"]
[3,20554046,20554226,181,40,0.137439567477718,0.0228876573564057,0.114551910121313,173.619379568557,"CHH","Os03g0568400","intron","Os03g0568400","Similar to Cytochrome P450 family protein && sp|O48958|C71E1_SORBI 4-hydroxyphenylacetaldehyde oxime monooxygenase OS=Sorghum bicolor OX=4558 GN=CYP71E1 PE=1 SV=1 && PF00067:Cytochrome P450"]
[3,20617507,20617698,192,86,0.0223572389872406,0.215844246025176,-0.193487007037935,-634.041343950559,"CHH","3:20616967:20617570","CGI"]
[3,20617507,20617698,192,86,0.0223572389872406,0.215844246025176,-0.193487007037935,-634.041343950559,"CHH","3:20617570:20619571","CGI_shore"]
[3,20775980,20776057,78,22,0.103969019957599,0.0254276705428769,0.0785413494147221,142.025969408259,"CHH","Os03g0571700","intron","Os03g0571700","Similar to TRANSPARENT TESTA 12 protein && sp|Q9LVD9|DTX40_ARATH Protein DETOXIFICATION 40 OS=Arabidopsis thaliana OX=3702 GN=DTX40 PE=1 SV=1 && PF01554:MatE"]
[3,20812382,20812802,421,124,0.155669375081104,0.0318573220795062,0.123812053001598,770.766510081554,"CHH","3:20812146:20812660","CGI"]
[3,21116367,21116424,58,10,0.575881912000318,0.807791447777802,-0.231909535777484,-39.3355007007733,"CG","3:21115795:21116900","CGI"]
[3,21148344,21148408,65,5,0.9114573618151,0.742460803815093,0.168996558000007,21.0620105742689,"CG","3:21147045:21149045","CGI_shore"]
[3,21298424,21298679,256,63,0.0792898102360959,0.0416676032485898,0.0376222069875061,242.390412427211,"CHH","3:21296705:21298705","CGI_shore"]
[3,21330232,21330373,142,68,0.262249139866019,0.147309026998024,0.114940112867995,358.169709544304,"CHH","3:21328300:21330316","CGI"]
[3,21431548,21431736,189,53,0.184159492069784,0.0643702961243632,0.11978919594542,240.578088475076,"CHH","3:21430086:21432086","CGI_shore"]
[3,21463261,21463386,126,11,0.734143053375054,0.0964093814639152,0.637733671911139,82.6089491027974,"CG","3:21463281:21463831","CGI"]
[3,21796769,21796836,68,8,0.530704291423417,0.261579529447174,0.269124761976243,37.908899167407,"CHG","3:21790486:21801997","CGI"]
[3,21964776,21964994,219,72,0.146599052843157,0.0460581818297661,0.100540871013391,428.792834294855,"CHH","3:21964619:21966620","CGI_shore"]
[3,22085441,22085655,215,73,0.0638031149109174,0.0180752333872305,0.0457278815236869,336.021839270321,"CHH","Os03g0594250","exon","Os03g0594250","Hypothetical protein && sp|A0A0N9HT29|C71BE_SINHE Desmethyl-deoxy-podophyllotoxin synthase OS=Sinopodophyllum hexandrum OX=93608 GN=CYP71BE54 PE=1 SV=1 && -"]
[3,22100493,22100745,253,80,0.116788944326313,0.204415577958217,-0.0876266336319046,-391.897958319614,"CG","3:22100497:22102497","CGI_shore"]
[3,22239559,22239643,85,29,0.134353091575684,0.0483343505800671,0.0860187409956172,137.206055079153,"CHH","3:22238208:22240067","CGI"]
[3,22257350,22257491,142,36,0.808567443454046,0.556617443809803,0.251949999644243,205.918634617223,"CG","3:22257349:22259640","CGI"]
[3,22514874,22514986,113,14,0.309182342290392,0.681729396040795,-0.372547053750403,-75.6479049437553,"CHG","3:22514694:22514957","CGI"]
[3,22514874,22514986,113,14,0.309182342290392,0.681729396040795,-0.372547053750403,-75.6479049437553,"CHG","3:22514957:22516958","CGI_shore"]
[3,22786771,22786891,121,44,0.115990038062981,0.0538220827817281,0.0621679552812527,222.703717686663,"CHH","3:22786442:22788443","CGI_shore"]
[3,22794390,22797328,2939,129,0.163179496008026,0.0368684050405927,0.126311090967433,815.652409971006,"CHH","3:22796539:22796781","CGI"]
[3,22852410,22852462,53,5,0.521970395074962,0.755782953168361,-0.233812558093399,-21.536541943592,"CG","Os03g0607700","promoter","Os03g0607700","Zinc finger, C2H2-like domain containing protein && sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1 && -"]
[3,23010977,23011182,206,39,0.0534590856096712,0.429709493973268,-0.376250408363597,-327.052036339561,"CHH","3:23009889:23011890","CGI_shore"]
[3,23126065,23126332,268,42,0.351091822382368,0.125131583207939,0.225960239174429,253.402504888517,"CHH","Os03g0612400","intron","OsSTA104","Similar to ASL1 && sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1 && PF03195:Lateral organ boundaries (LOB) domain"]
[3,23398678,23398748,71,27,0.257930832023947,0.169084510118944,0.0888463219050033,127.363920419154,"CHH","3:23398144:23400144","CGI_shore"]
[3,23567357,23567437,81,18,0.0446605901854839,0.14929895520746,-0.104638365021976,-76.4133778071922,"CHH","3:23566843:23568844","CGI_shore"]
[3,23716825,23717022,198,59,0.133825452374886,0.0452074431138445,0.0886180092610419,261.434391981178,"CHH","3:23716066:23718067","CGI_shore"]
[3,24175131,24175216,86,22,0.261596431126909,0.161159706556643,0.100436724570265,100.709891395562,"CHH","Os03g0632800","intron","RING finger protein","Similar to Zinc finger, C3HC4 type (RING finger) containing protein && sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 && PF13923:Zinc finger, C3HC4 type (RING finger)"]
[3,24240335,24240502,168,53,0.160390204907771,0.0272321751669619,0.133158029740809,278.820587277755,"CHH","3:24237253:24240946","CGI"]
[3,24672072,24672129,58,19,0.21663565621194,0.11375857822893,0.10287707798301,93.9639169963869,"CHH","3:24670938:24672939","CGI_shore"]
[3,24723660,24723820,161,42,0.21402620286973,0.0996970232836183,0.114329179586112,196.314340821557,"CHH","3:24721667:24723668","CGI_shore"]
[3,24891033,24891126,94,32,0.273648944066343,0.0216861834318081,0.251962760634535,187.404531032163,"CHH","3:24890201:24891761","CGI"]
[3,25057619,25057670,52,15,0.0638931847098354,0.353591648809641,-0.289698464099806,-82.9770177462679,"CHH","3:25056231:25058231","CGI_shore"]
[3,25286563,25286704,142,36,0.494696414727024,0.291379671009561,0.203316743717463,192.644065523246,"CHH","3:25285952:25287952","CGI_shore"]
[3,25286927,25287117,191,71,0.178256948558354,0.0615961900129631,0.116660758545391,369.814141650597,"CHH","3:25285952:25287952","CGI_shore"]
[3,25395617,25395673,57,5,0.794990578689697,0.919263014476065,-0.124272435786368,-24.0650294927564,"CG","3:25394408:25396409","CGI_shore"]
[3,25406234,25406547,314,85,0.392347654877737,0.109000523237171,0.283347131640565,483.571143076923,"CHH","3:25403620:25411428","CGI"]
[3,25862089,25862198,110,34,0.143606333657041,0.0364233895291478,0.107182944127893,159.733283146837,"CHH","Os03g0660000","promoter","Os03g0660000","Conserved hypothetical protein && - && -"]
[3,25916414,25916554,141,16,0.463323569801185,0.746354612545799,-0.283031042744614,-67.6188753163324,"CHG","3:25914779:25916779","CGI_shore"]
[3,26197890,26198100,211,40,0.508294435752684,0.819790501866974,-0.31149606611429,-180.989504660923,"CG","3:26197918:26198432","CGI"]
[3,26247802,26247921,120,32,0.166166131957892,0.0463951246140933,0.119771007343798,166.325944835033,"CHH","3:26247467:26249468","CGI_shore"]
[3,26464467,26464622,156,39,0.557074870522815,0.823627248642843,-0.266552378120028,-188.42867378175,"CG","3:26464173:26466173","CGI_shore"]
[3,26506726,26506804,79,18,0.274713385587714,0.13955894555864,0.135154440029074,110.77268965882,"CHH","Os03g0671800","intron","basic helix-loop-helix protein 020","Helix-loop-helix DNA-binding domain containing protein && sp|Q9T072|BH025_ARATH Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2 && PF00010:Helix-loop-helix DNA-binding domain"]
[3,26798986,26799086,101,26,0.466828521792254,0.74781209042728,-0.280983568635026,-126.403167529606,"CG","Os03g0677475","promoter","Os03g0677475","Conserved hypothetical protein && - && -"]
[3,26919193,26919300,108,50,0.247054568254377,0.139586080321644,0.107468487932733,239.480360049137,"CHH","Os03g0679300","intron","Os03g0679300","Similar to Ubiquitin-conjugating enzyme family protein, expressed && sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 && -"]
[3,27177012,27177137,126,23,0.0238871766674282,0.483645349166498,-0.45975817249907,-170.079028899262,"CHH","Os03g0682600","promoter","ARGONAUTE 11","Protein argonaute 11 && sp|Q10F39|AGO11_ORYSJ Protein argonaute 11 OS=Oryza sativa subsp. japonica OX=39947 GN=AGO11 PE=2 SV=2 && PF02170:PAZ domain|PF16486:N-terminal domain of argonaute|PF16488:Argonaute linker 2 domain|PF16487:Mid domain of argonaute|PF02171:Piwi domain"]
[3,27204087,27204636,550,74,0.307484244194274,0.47748780301432,-0.170003558820046,-333.7631245372,"CG","Target=(TCG)n:1-152;Class=Simple_repeat","repeat"]
[3,27249259,27249411,153,34,0.167307069269422,0.0447612198325562,0.122545849436866,182.302778089757,"CHH","Os03g0683700","intron","Os03g0683700","Conserved hypothetical protein && sp|Q8RX56|UNC13_ARATH Protein unc-13 homolog OS=Arabidopsis thaliana OX=3702 GN=PATROL1 PE=2 SV=1 && PF05664:Plant family of unknown function (DUF810)"]
[3,27622979,27623098,120,22,0.539973922356222,0.893742216305052,-0.35376829394883,-108.638087595436,"CG","3:27622977:27624077","CGI"]
[3,27701981,27702072,92,26,0.18841909494785,0.0538906004419738,0.134528494505877,151.389520430741,"CHH","3:27701141:27703141","CGI_shore"]
[3,27730623,27730796,174,58,0.245132305705709,0.150443716737546,0.0946885889681632,255.465395211715,"CHH","Os03g0692700","promoter","Os03g0692700","Similar to Pherophorin-S precursor && - && PF04398:Protein of unknown function, DUF538"]
[3,28089569,28089761,193,48,0.395887047056647,0.251089442160056,0.144797604896591,231.001464418424,"CHH","3:28087949:28089949","CGI_shore"]
[3,28115194,28115310,117,39,0.0718109982746689,0.0317688802886121,0.0400421179860568,168.675092000427,"CHH","3:28113928:28115929","CGI_shore"]
[3,28547290,28547516,227,58,0.352066145517217,0.0890332322291385,0.263032913288078,378.683650340928,"CHH","Os03g0708000","promoter","PLA2-III","Phospholipase A2 family protein && sp|Q10E50|PLA23_ORYSJ Phospholipase A2 homolog 3 OS=Oryza sativa subsp. japonica OX=39947 GN=PLA2-III PE=1 SV=1 && -"]
[3,28591172,28591306,135,41,0.0901279448682291,0.0216441292202835,0.0684838156479457,197.892815821751,"CHH","Os03g0708900","intron","Os03g0708900","Zinc finger, RanBP2-type domain containing protein && - && PF00641:Zn-finger in Ran binding protein and others"]
[3,28669016,28669343,328,68,0.324716234484269,0.0925938025220382,0.232122431962231,427.862627800802,"CHH","Os03g0710900","promoter","Os03g0710900","Similar to CCAAT displacement protein-related / CDP-related && sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana OX=3702 GN=CASP PE=1 SV=2 && PF08172:CASP C terminal"]
[3,28782572,28782816,245,66,0.259389237816855,0.124959325191084,0.13442991262577,321.338674768341,"CHH","3:28781946:28783947","CGI_shore"]
[3,29127169,29127349,181,39,0.357200122581342,0.189305964497361,0.167894158083981,219.579930834941,"CHH","3:29127148:29129149","CGI_shore"]
[3,29168878,29169213,336,85,0.280888655609612,0.156794561556153,0.124094094053459,482.584045936374,"CHH","3:29167375:29169376","CGI_shore"]
[3,29365908,29366115,208,38,0.261765909264481,0.0293533739043945,0.232412535360087,267.222160910993,"CHH","3:29352364:29372578","CGI"]
[3,29524315,29524425,111,22,0.0793346213041598,0.0269299077696312,0.0524047135345287,130.265837536741,"CHH","3:29520810:29526413","CGI"]
[3,29710210,29710293,84,11,0.630517455682078,0.178606500583033,0.451910955099045,62.6475039581305,"CHG","3:29684243:29717086","CGI"]
[3,29715236,29715354,119,43,0.267297085451763,0.0845228533069045,0.182774232144858,224.875594600405,"CHH","Os03g0727900","intron","Os03g0727900","GTP1/OBG domain containing protein && sp|Q0WTB4|Y3725_ARATH GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g49725 PE=2 SV=2 && PF16360:GTP-binding GTPase Middle Region|PF01926:50S ribosome-binding GTPase|PF13167:GTP-binding GTPase N-terminal"]
[3,29764744,29765140,397,141,0.203056354441393,0.106238918677738,0.0968174357636543,695.226756012253,"CHH","3:29764056:29766056","CGI_shore"]
[3,29867200,29867252,53,14,0.265438448753854,0.133652967158369,0.131785481595485,74.1049012708853,"CHH","3:29866793:29868793","CGI_shore"]
[3,29977433,29977545,113,36,0.0565839967605146,0.0297416251344265,0.0268423716260881,172.53520825582,"CHH","Os03g0732200","intron","Os03g0732200","Similar to dynamin-2A && sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana OX=3702 GN=DRP2A PE=1 SV=2 && -"]
[3,29977433,29977545,113,36,0.0565839967605146,0.0297416251344265,0.0268423716260881,172.53520825582,"CHH","3:29977488:29978340","CGI"]
[3,30357263,30357325,63,20,0.126979647507676,0.0232994539475116,0.103680193560165,102.484802321011,"CHH","3:30356786:30358786","CGI_shore"]
[3,30447931,30448310,380,110,0.173274912508693,0.373607146041712,-0.200332233533019,-908.396074955389,"CG","3:30443989:30452124","CGI"]
[3,30519955,30520035,81,33,0.106508802830617,0.0589845424639645,0.0475242603666528,122.144980558756,"CHH","Os03g0743650","utr3","Os03g0743650","Conserved hypothetical protein && sp|Q7Y1C8|KN14G_ORYSJ Kinesin-like protein KIN-14G OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14G PE=2 SV=2 && -"]
[3,30758404,30758546,143,19,0.216637995338874,0.044582731597161,0.172055263741713,122.322742472319,"CHH","Os03g0747700","promoter","Os03g0747700","Similar to photosystem II 11 kDa protein-related && sp|Q9ZVZ9|PB27B_ARATH Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1 && PF13326:Photosystem II Pbs27"]
[3,30836074,30836179,106,27,0.0535840690047096,0.198826669338463,-0.145242600333754,-131.869203963959,"CG","Os03g0749200","utr3","Os03g0749200","Hypothetical protein && sp|A7LXU3|BGH3B_BACO1 Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1 && -"]
[3,30999243,30999530,288,88,0.491656007915359,0.783144607012436,-0.291488599097078,-770.262705694361,"CG","3:30998235:31000235","CGI_shore"]
[3,31301539,31301608,70,12,0.314071267263791,0.627588265707394,-0.313516998443603,-54.6642215953519,"CG","Os03g0757400","promoter","Os03g0757400","Hypothetical protein && sp|Q9SGA8|U83A1_ARATH UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana OX=3702 GN=UGT83A1 PE=2 SV=1 && -"]
[3,31344240,31344346,107,26,0.179061546185499,0.0446884096090004,0.134373136576499,163.006371615197,"CHH","Os03g0758300","promoter","CYCLIC NUCLEOTIDE GATED CHANNEL 7","Similar to Cyclic nucleotide-gated ion channel 2 (AtCNGC2) (Cyclic nucleotide-and calmodulin-regulated ion channel 2) (DEFENSE NO DEATH 1) && sp|O65718|CNGC2_ARATH Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana OX=3702 GN=CNGC2 PE=1 SV=1 && PF00027:Cyclic nucleotide-binding domain|PF00520:Ion transport protein"]
[3,31968454,31968544,91,22,0.152027182071494,0.0226019202207136,0.129425261850781,101.745211799901,"CHH","3:31967649:31969649","CGI_shore"]
[3,32000785,32000858,74,19,0.118014419244804,0.00624635227823751,0.111768066966566,89.6405408499714,"CHH","3:32000589:32002590","CGI_shore"]
[3,32186037,32186182,146,24,0.320670877384701,0.107203162894019,0.213467714490682,132.06266076242,"CHH","3:32183028:32204698","CGI"]
[3,32397014,32397092,79,35,0.0677585160539351,0.174963535070379,-0.107205019016444,-125.143149416981,"CG","Os03g0781200","utr3","Os03g0781200","Hypothetical protein && - && -"]
[3,32453741,32453855,115,19,0.326889959388363,0.0909561917204831,0.23593376766788,118.369521944354,"CHH","3:32451914:32453915","CGI_shore"]
[3,32783176,32783366,191,44,0.281138105995744,0.143285782426145,0.137852323569599,236.602755256119,"CHH","3:32783018:32785019","CGI_shore"]
[3,32809157,32809346,190,45,0.388216183112776,0.238058657724421,0.150157525388355,217.386240240526,"CHH","3:32809079:32811080","CGI_shore"]
[3,32874768,32874829,62,14,0.23494449712617,0.0622045361516823,0.172739960974487,78.3393362843451,"CHH","Os03g0790700","intron","aldehyde oxidase","Aldehyde oxidase-2 && sp|Q852M2|ALDO3_ORYSJ Probable aldehyde oxidase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0790700 PE=2 SV=1 && PF02738:Molybdopterin-binding domain of aldehyde dehydrogenase|PF01799:[2Fe-2S] binding domain|PF03450:CO dehydrogenase flavoprotein C-terminal domain|PF00941:FAD binding domain in molybdopterin dehydrogenase|PF01315:Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain"]
[3,33219829,33220050,222,70,0.278366369915636,0.140386330584072,0.137980039331563,463.457346633808,"CHH","3:33220032:33222032","CGI_shore"]
[3,33452528,33452624,97,25,0.358026831277112,0.18513927096618,0.172887560310933,126.981884589341,"CHH","Os03g0801900","promoter","Os03g0801900","Protein of unknown function DUF569 family protein && - && PF04601:Domain of unknown function (DUF569)"]
[3,33703954,33704088,135,16,0.208867041057337,0.692048956472413,-0.483181915415076,-99.5619193291805,"CHG","3:33702378:33704379","CGI_shore"]
[3,33830800,33830920,121,20,0.44864313888858,0.234985260098217,0.213657878790362,95.5303063632333,"CHH","3:33816355:33877216","CGI"]
[3,34252671,34252928,258,114,0.284411470961684,0.13859215261948,0.145819318342205,665.457482481998,"CHH","3:34250877:34252877","CGI_shore"]
[3,34443267,34443386,120,19,0.0104260979361797,0.0881823768443587,-0.077756278908179,-85.831528067785,"CHG","Os03g0821000","utr3","Os03g0821000","Hypothetical protein && - && -"]
[3,34512896,34512977,82,32,0.0747794930239734,0.00610696004925718,0.0686725329747162,116.678248652838,"CHH","3:34512447:34514448","CGI_shore"]
[3,34700082,34700217,136,48,0.359945098892439,0.221810000194228,0.138135098698211,223.945724790525,"CHH","3:34699199:34701200","CGI_shore"]
[3,35385580,35385788,209,41,0.154723133531207,0.0488629177507865,0.10586021578042,232.775199694625,"CHH","Os03g0841850","promoter","Os03g0841850","Hypothetical protein && sp|Q9FVS6|KSG4_ARATH Shaggy-related protein kinase delta OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=2 SV=1 && -"]
[3,35559283,35559345,63,17,0.33493218715991,0.206737654086618,0.128194533073292,78.9707989922082,"CHH","3:35558156:35560157","CGI_shore"]
[3,36137640,36137817,178,59,0.127708104149068,0.0479960195535684,0.0797120845954993,317.177903395967,"CHH","3:36136640:36138640","CGI_shore"]
[3,36166053,36166156,104,40,0.118742591105389,0.0150805876523214,0.103662003453067,235.556770761249,"CHH","3:36164963:36166964","CGI_shore"]
[3,36176389,36176490,102,33,0.0126861275405731,0.109435861606965,-0.0967497340663919,-163.742021433218,"CHH","3:36175327:36177328","CGI_shore"]
[3,36413588,36413679,92,36,0.234826807002072,0.118476606960272,0.1163502000418,208.330072467134,"CHH","Target=(TTAGGG)n:1-353;Class=Simple_repeat","repeat"]
[4,65408,65468,61,15,0.635432690593026,0.827101403978603,-0.191668713385578,-58.4234816965416,"CG","4:58987:66368","CGI"]
[4,317608,317662,55,14,0.431064312013581,0.178440991029512,0.25262332098407,92.3417460916194,"CHH","4:315745:317746","CGI_shore"]
[4,463387,463506,120,23,0.148831009129453,0.0388866595446102,0.109944349584843,109.233515848008,"CHH","4:463223:465223","CGI_shore"]
[4,554535,554696,162,33,0.268207262497503,0.142284198449114,0.12592306404839,161.808956244642,"CHH","Os04g0109100","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 125","Concanavalin A-like lectin/glucanase domain containing protein && sp|Q9FG33|LRKS5_ARATH Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana OX=3702 GN=LECRKS5 PE=2 SV=1 && PF00139:Legume lectin domain|PF07714:Protein tyrosine kinase"]
[4,583115,583275,161,64,0.207032378199552,0.116710562347963,0.0903218158515881,337.666264680864,"CHH","4:581264:587450","CGI"]
[4,810478,810675,198,49,0.173009363540978,0.0365461809661728,0.136463182574805,281.645160817342,"CHH","4:810419:810838","CGI"]
[4,843007,843181,175,33,0.30496589703339,0.505347069340535,-0.200381172307145,-157.116694025793,"CHG","4:842736:844736","CGI_shore"]
[4,986247,986597,351,93,0.163435712310796,0.0532709312660292,0.110164781044767,521.524367553892,"CHH","4:985272:987273","CGI_shore"]
[4,1126594,1126696,103,14,0.508524186118195,0.713822521154907,-0.205298335036711,-66.2583439735996,"CG","Os04g0118900","promoter","Os04g0118900","Similar to Arginine/serine-rich splicing factor 1 variant 2 && sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[4,1412172,1412258,87,13,0.62244956210722,0.359727524746085,0.262722037361135,52.3417005265272,"CG","4:1410987:1412987","CGI_shore"]
[4,1682587,1682699,113,29,0.260644069634029,0.136118900412558,0.124525169221471,131.100168227691,"CHH","Os04g0127001","utr5","Os04g0127001","Conserved hypothetical protein && - && -"]
[4,1943098,1943195,98,11,0.652068557892446,0.873330309951893,-0.221261752059448,-66.3740500978657,"CG","4:1941185:1943186","CGI_shore"]
[4,2381752,2381830,79,4,0.263520676287684,0.703797623385041,-0.440276947097357,-20.4028358304482,"CHG","4:2373779:2384766","CGI"]
[4,2521612,2521909,298,5,0.477933311159208,0.127627252685245,0.350306058473962,27.0405794183694,"CHG","4:2521860:2523861","CGI_shore"]
[4,2600247,2600302,56,18,0.15666298462443,0.0838188746879794,0.0728441099364505,81.3935736390986,"CHH","4:2558986:2630340","CGI"]
[4,2833421,2833568,148,70,0.0152129145618001,0.0783752984600742,-0.0631623838982741,-340.658740915538,"CHH","4:2833370:2835371","CGI_shore"]
[4,3239898,3239970,73,13,0.0689509694940452,0.20699293282436,-0.138041963330315,-71.846468145315,"CHH","4:3239686:3241687","CGI_shore"]
[4,3408801,3408856,56,10,0.367675158794852,0.11110248142544,0.256572677369412,58.914274022706,"CHG","4:3408699:3409214","CGI"]
[4,3708461,3708605,145,35,0.825095857686016,0.596426919825489,0.228668937860527,159.140114118366,"CG","4:3708275:3713868","CGI"]
[4,3883552,3883649,98,17,0.303456740879239,0.613862544923758,-0.310405804044519,-70.9893157042774,"CHG","4:3883332:3883745","CGI"]
[4,4107689,4107786,98,13,0.631591781997543,0.291122934388497,0.340468847609046,60.4260810662061,"CHG","4:4100620:4111256","CGI"]
[4,4229412,4229833,422,125,0.197218082917526,0.103190835695903,0.0940272472216225,611.009996139674,"CHH","4:4228047:4230047","CGI_shore"]
[4,4274206,4274307,102,48,0.264670538424597,0.150139451043549,0.114531087381048,245.699391008524,"CHH","4:4272284:4274284","CGI_shore"]
[4,4274613,4274758,146,57,0.113262324887141,0.0495866303899444,0.0636756944971963,261.655199184489,"CHH","4:4274285:4275447","CGI"]
[4,4440271,4440335,65,24,0.101854220032342,0.0522304286615884,0.0496237913707532,102.662162706169,"CHH","Os04g0165300","intron","Os04g0165300","Conserved hypothetical protein && sp|O82775|ATI1_ARATH ATG8-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=ATI1 PE=1 SV=2 && -"]
[4,4962982,4963085,104,10,0.216832686012593,0.741379752915277,-0.524547066902684,-50.4399358490666,"CHG","4:4961102:4963920","CGI"]
[4,4965584,4965975,392,71,0.388982958522499,0.246323289772123,0.142659668750375,438.837804526169,"CG","4:4963920:4965921","CGI_shore"]
[4,5270984,5271065,82,24,0.144396807538963,0.0832786924054638,0.0611181151334996,113.291799049457,"CHH","4:5270648:5272648","CGI_shore"]
[4,5642767,5642973,207,59,0.132183849289118,0.0189340156111982,0.113249833677919,318.902152041123,"CHH","4:5642943:5644943","CGI_shore"]
[4,5678161,5678310,150,48,0.150456156290747,0.0503087855027302,0.100147370788017,285.438650493322,"CHH","4:5677898:5679898","CGI_shore"]
[4,5703524,5703694,171,60,0.213747969561034,0.110218351809805,0.103529617751229,305.432584422405,"CHH","4:5703111:5705112","CGI_shore"]
[4,6261952,6262012,61,5,0.253706616345704,0.0182574356927762,0.235449180652928,21.2752985692496,"CHG","4:6261471:6263471","CGI_shore"]
[4,6435242,6435355,114,43,0.198144164455607,0.0386965324808611,0.159447631974745,299.920293649227,"CHH","4:6434528:6436529","CGI_shore"]
[4,6566505,6566688,184,45,0.2056619657344,0.0797199535827125,0.125942012151687,225.844647041853,"CHH","Os04g0196200","utr3","Os04g0196200","Winged helix repressor DNA-binding domain containing protein && sp|Q6EPG8|ASMT1_ORYSJ Acetylserotonin O-methyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ASMT1 PE=1 SV=1 && PF08100:Dimerisation domain|PF00891:O-methyltransferase domain"]
[4,6629367,6629459,93,27,0.120953033807041,0.033827038486651,0.0871259953203897,148.187239156073,"CHH","Os04g0197100","promoter","Os04g0197100","Similar to OSIGBa0146N20.4 protein && - && PF01657:Salt stress response/antifungal"]
[4,6924389,6924594,206,67,0.520959448658542,0.34513995732996,0.175819491328583,398.360608451258,"CHH","4:6923074:6925075","CGI_shore"]
[4,7154113,7154224,112,28,0.0724353457869644,0.0242474470330156,0.0481878987539488,148.6089390871,"CHH","Os04g0206500","exon","Os04g0206500","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|M0Y4P1|UGT13_HORVV UDP-glucosyltransferase UGT13248 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[4,7177011,7177143,133,37,0.113481329336426,0.0425762807342513,0.0709050486021751,183.455832750814,"CHH","4:7175727:7177727","CGI_shore"]
[4,7240903,7240968,66,6,0.628480900561374,0.343007186394616,0.285473714166758,27.2071388386039,"CHG","4:7239779:7241373","CGI"]
[4,7314916,7314983,68,22,0.250985039747411,0.14576565219516,0.105219387552251,105.646386475744,"CHH","4:7314303:7316303","CGI_shore"]
[4,7352736,7352925,190,56,0.215716338515985,0.109752742236914,0.105963596279071,297.383866511653,"CHH","4:7351743:7353744","CGI_shore"]
[4,7450443,7450494,52,4,0.292375330845021,0.672717331725455,-0.380342000880434,-19.3554828240117,"CHG","4:7449082:7451083","CGI_shore"]
[4,7495470,7495646,177,60,0.20938829121759,0.112989686801958,0.0963986044156317,288.314151730503,"CHH","4:7494067:7496068","CGI_shore"]
[4,7649091,7649382,292,92,0.0885408813242526,0.0214884199034681,0.0670524614207845,415.45654307463,"CHH","4:7632843:7663044","CGI"]
[4,7856539,7856716,178,58,0.065008769585987,0.0187014320960479,0.0463073374899391,276.10187904651,"CHH","4:7854702:7856703","CGI_shore"]
[4,7876360,7876416,57,14,0.240365386099682,0.0369663078806475,0.203399078219035,77.0281251993822,"CHH","Os04g0217900","promoter","Os04g0217900","Similar to TRAF-type zinc finger family protein && - && -"]
[4,7887758,7887883,126,42,0.174896775793535,0.086576297539045,0.0883204782544899,199.151646801647,"CHH","4:7887432:7887764","CGI"]
[4,7959784,7959851,68,12,0.561425378358034,0.819594259129453,-0.258168880771419,-52.9024144031455,"CG","4:7959338:7960493","CGI"]
[4,7971603,7971671,69,25,0.106588666669174,0.0429736363223738,0.0636150303468005,120.354117410914,"CHH","4:7971211:7971715","CGI"]
[4,8016758,8016911,154,48,0.268625069898737,0.164770684777282,0.103854385121455,218.220552419274,"CHH","4:8015863:8017864","CGI_shore"]
[4,8074226,8074390,165,54,0.141243916336457,0.0655731142355234,0.0756708021009332,258.042940191585,"CHH","4:8072515:8074516","CGI_shore"]
[4,8102777,8103011,235,50,0.165592142885811,0.0986448121277697,0.0669473307580414,205.168775071907,"CHH","4:8101995:8103996","CGI_shore"]
[4,8127618,8127694,77,22,0.188961828328349,0.0488191596986238,0.140142668629725,115.89496111645,"CHH","4:8125329:8133877","CGI"]
[4,8166117,8166167,51,8,0.22791212604497,0.366139554099265,-0.138227428054295,-38.8955407805895,"CHG","Os04g0222250","TSS","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8210479,8210808,330,97,0.190386965967052,0.0995197013626517,0.0908672646044,442.948304282531,"CHH","4:8209092:8211092","CGI_shore"]
[4,8245977,8246099,123,29,0.153589759733318,0.0547371225485107,0.098852637184807,162.808005224363,"CHH","Os04g0223500","promoter","Os04g0223500","Dimethylaniline monooxygenase, N-oxide-forming domain containing protein && sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=FMO1 PE=2 SV=1 && PF00743:Flavin-binding monooxygenase-like"]
[4,8250844,8251143,300,77,0.293009430359034,0.144012587959052,0.148996842399982,446.676694314832,"CHH","Os04g0223500","promoter","Os04g0223500","Dimethylaniline monooxygenase, N-oxide-forming domain containing protein && sp|Q9LMA1|FMO1_ARATH Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=FMO1 PE=2 SV=1 && PF00743:Flavin-binding monooxygenase-like"]
[4,8352238,8352403,166,24,0.258009323711791,0.105871928037407,0.152137395674384,123.91967447805,"CHG","4:8349440:8360561","CGI"]
[4,8430526,8430710,185,27,0.72192238019502,0.343092294764523,0.378830085430497,129.224580260819,"CHG","4:8429547:8431548","CGI_shore"]
[4,8637259,8637368,110,25,0.0142587476041854,0.11954859621694,-0.105289848612755,-150.269348898039,"CHH","Os04g0229100","utr3","CINNAMYL ALCOHOL DEHYDROGENASE 6","Similar to Sinapyl alcohol dehydrogenase && sp|Q7XWU3|CADH6_ORYSJ Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CAD6 PE=2 SV=2 && PF08240:Alcohol dehydrogenase GroES-like domain|PF00107:Zinc-binding dehydrogenase"]
[4,8695572,8695663,92,10,0.0535451282425579,0.512259741002582,-0.458714612760024,-64.2851000979621,"CHG","4:8693832:8695832","CGI_shore"]
[4,9610069,9610277,209,72,0.178095716987641,0.0267251653889758,0.151370551598665,391.556230754574,"CHH","4:9608994:9610995","CGI_shore"]
[4,9955431,9955623,193,53,0.339374063215728,0.190547647496195,0.148826415719533,295.484422063594,"CHH","4:9953819:9955819","CGI_shore"]
[4,10144051,10144231,181,85,0.203582036847428,0.326103604608112,-0.122521567760684,-396.908010521679,"CHH","4:10142179:10154673","CGI"]
[4,10327165,10327453,289,112,0.144826046632641,0.0569003925732357,0.0879256540594051,525.356518851323,"CHH","4:10325891:10327891","CGI_shore"]
[4,10643625,10643830,206,70,0.158882409475396,0.00990507290768283,0.148977336567713,478.790589973524,"CHH","4:10643472:10645472","CGI_shore"]
[4,11055790,11055900,111,23,0.203594897852647,0.0332699267345456,0.170324971118101,108.534139274048,"CHH","Os04g0267250","promoter","Os04g0267250","Hypothetical gene && - && -"]
[4,11281893,11282098,206,36,0.178522683798634,0.0556929184266411,0.122829765371993,183.207521308042,"CHH","Os04g0270100","intron","Os04g0270100","Similar to GTP-binding protein && sp|Q8R050|ERF3A_MOUSE Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus OX=10090 GN=Gspt1 PE=1 SV=2 && PF00009:Elongation factor Tu GTP binding domain|PF03143:Elongation factor Tu C-terminal domain|PF03144:Elongation factor Tu domain 2"]
[4,11499621,11499679,59,15,0.0648883956412717,0.191917429804881,-0.127029034163609,-75.1377999055147,"CG","Os04g0274100","exon","Os04g0274100","Conserved hypothetical protein && sp|Q94C57|U73B2_ARATH UDP-glucosyl transferase 73B2 OS=Arabidopsis thaliana OX=3702 GN=UGT73B2 PE=1 SV=1 && -"]
[4,11816372,11816593,222,44,0.393764940422297,0.109681488295875,0.284083452126422,269.80723415919,"CHH","Os04g0278900","promoter","Os04g0278900","Similar to OSIGBa0113C11.1 protein && sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine(20/20a) synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) OX=243277 GN=dusA PE=3 SV=1 && PF01207:Dihydrouridine synthase (Dus)"]
[4,12112442,12112531,90,31,0.137785437326092,0.0593783131172914,0.0784071242088003,144.411864398858,"CHH","4:12112215:12114216","CGI_shore"]
[4,12288995,12289077,83,25,0.161779041533609,0.00764779439554618,0.154131247138063,132.089023667218,"CHH","4:12288233:12290233","CGI_shore"]
[4,12353697,12353777,81,18,0.125347830155158,0.0084811227961994,0.116866707358959,109.532223788605,"CHH","4:12352453:12354454","CGI_shore"]
[4,12536138,12536320,183,53,0.187915050252412,0.0507332361477363,0.137181814104675,347.218787010834,"CHH","4:12535914:12537914","CGI_shore"]
[4,12760743,12761037,295,101,0.171566658528011,0.0373009246133222,0.134265733914689,518.144844250117,"CHH","4:12759841:12761841","CGI_shore"]
[4,13198209,13198310,102,43,0.105430112141708,0.0327019327881932,0.0727281793535147,250.387334407576,"CHH","4:13196307:13198308","CGI_shore"]
[4,13565381,13565525,145,48,0.125464791691949,0.0399800327792212,0.0854847589127279,248.78489788977,"CHH","4:13563490:13565490","CGI_shore"]
[4,13724696,13724777,82,15,0.174718828571033,0.0528117079281312,0.121907120642902,70.9613856199981,"CHH","4:13723996:13725996","CGI_shore"]
[4,13885981,13886125,145,30,0.388620478816119,0.23805119990511,0.150569278911009,145.824027947232,"CG","4:13885391:13886186","CGI"]
[4,13910375,13910463,89,18,0.0758874100491009,0.00983792258505018,0.0660494874640507,80.3898689756662,"CHH","4:13908510:13910511","CGI_shore"]
[4,13912599,13912789,191,64,0.270871209002223,0.10003838343406,0.170832825568163,376.379839420411,"CHH","4:13912773:13913768","CGI"]
[4,14198393,14198589,197,12,0.261164644130721,0.746329972759257,-0.485165328628536,-61.1533106953399,"CHG","4:14198428:14200429","CGI_shore"]
[4,14352574,14352749,176,45,0.319327827370848,0.177223151317752,0.142104676053096,224.821997280296,"CHH","4:14352224:14354225","CGI_shore"]
[4,14786794,14786856,63,16,0.15818121306624,0.307390157992466,-0.149208944926227,-79.1855421388595,"CHH","4:14785308:14787308","CGI_shore"]
[4,15152283,15152442,160,53,0.0656862616711287,0.00875321417640577,0.056933047494723,239.701629273908,"CHH","4:15151065:15153065","CGI_shore"]
[4,15456547,15456614,68,30,0.100699725497665,0.01509093560044,0.0856087898972254,181.118606214854,"CHH","Os04g0331650","exon","Os04g0331650","Hypothetical conserved gene && - && -"]
[4,15516095,15516177,83,24,0.178536114370901,0.353119410551445,-0.174583296180543,-113.862445654544,"CG","4:15514439:15516440","CGI_shore"]
[4,15858762,15858841,80,32,0.182192293148576,0.0613259336081129,0.120866359540463,157.659458413085,"CHH","4:15858284:15859044","CGI"]
[4,15858996,15859210,215,84,0.242240671000243,0.0819647227152989,0.160275948284944,640.595386708055,"CHH","4:15859044:15861045","CGI_shore"]
[4,16007605,16007938,334,76,0.284710767094968,0.139641262587674,0.145069504507294,385.895605463576,"CHH","4:16006744:16008745","CGI_shore"]
[4,16078495,16078657,163,21,0.0072106331660607,0.267334335577357,-0.260123702411296,-118.978060263816,"CHH","4:16077793:16079345","CGI"]
[4,16202210,16202346,137,24,0.701120161172425,0.489870792445537,0.211249368726889,126.999122899654,"CHG","4:16201517:16203517","CGI_shore"]
[4,16392046,16392279,234,68,0.153436851410994,0.0327988310629662,0.120638020348028,412.474485039098,"CHH","4:16391593:16393594","CGI_shore"]
[4,16443625,16443827,203,61,0.169367187540214,0.0566900099023284,0.112677177637886,401.203605130522,"CHH","Os04g0345800","intron","Os04g0345800","Similar to OSIGBa0127B24.5 protein && sp|Q7XNS7|MTND3_ORYSJ 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ARD3 PE=3 SV=3 && PF03079:ARD/ARD' family"]
[4,16545676,16545782,107,27,0.0200201553691398,0.129598704936106,-0.109578549566966,-158.090532527624,"CHH","Os04g0347700","promoter","Os04g0347700","Similar to OSIGBa0130K07.4 protein && sp|O23277|PRD1_ARATH Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=PRD1 PE=1 SV=3 && -"]
[4,16752370,16752486,117,30,0.497441798727188,0.811375377288252,-0.313933578561064,-161.156671687883,"CG","4:16752069:16755349","CGI"]
[4,16752370,16752486,117,30,0.497441798727188,0.811375377288252,-0.313933578561064,-161.156671687883,"CG","Os04g0351100","exon","Os04g0351100","Hypothetical protein && - && PF13041:PPR repeat family|PF01535:PPR repeat"]
[4,17093338,17093405,68,14,0.0194052505569578,0.186615033890212,-0.167209783333254,-77.7827878868897,"CHH","4:17091449:17093449","CGI_shore"]
[4,17108819,17108884,66,18,0.0575704984692775,0.00443230598368329,0.0531381924855942,118.774280239426,"CHH","4:17107825:17109825","CGI_shore"]
[4,17218300,17218426,127,39,0.18329199734045,0.0631613993821978,0.120130597958252,186.534495894508,"CHH","4:17216871:17218871","CGI_shore"]
[4,17543044,17543099,56,6,0.402541724724591,0.697483767282116,-0.294942042557525,-28.6829978934754,"CHG","4:17524486:17546571","CGI"]
[4,17809922,17814241,4320,60,0.0148366445106844,0.121522027677748,-0.106685383167064,-322.443726872397,"CHH","4:17809792:17810249","CGI"]
[4,17903822,17903921,100,15,0.416047949619484,0.621452749935425,-0.205404800315941,-66.7773428728068,"CHG","4:17903705:17904632","CGI"]
[4,18367119,18367326,208,80,0.223439944438299,0.0795887517917357,0.143851192646563,400.357118956155,"CHH","4:18365607:18368313","CGI"]
[4,18419199,18419285,87,34,0.290829012073547,0.125386351077599,0.165442660995947,180.475480742298,"CHH","Os04g0376700","promoter","Os04g0376700","Similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12) && sp|Q9ZTN2|ERD2_PETHY ER lumen protein-retaining receptor OS=Petunia hybrida OX=4102 GN=ERD2 PE=2 SV=1 && PF00810:ER lumen protein retaining receptor"]
[4,18483035,18483100,66,18,0.477646621004084,0.782794225767498,-0.305147604763414,-82.974428962612,"CG","4:18482726:18483317","CGI"]
[4,18484981,18485088,108,25,0.0114013515994665,0.324720651835323,-0.313319300235857,-173.221459976298,"CHH","4:18483317:18485318","CGI_shore"]
[4,18519059,18519124,66,17,0.427223799599539,0.290859022660032,0.136364776939507,76.768282553417,"CHH","4:18517775:18519775","CGI_shore"]
[4,18649093,18649144,52,4,0.279127749209367,0.0530675694946582,0.226060179714709,16.6319054186995,"CHG","4:18648925:18650925","CGI_shore"]
[4,18788592,18788711,120,33,0.144223478520865,0.371240386836347,-0.227016908315482,-142.023932524902,"CHG","4:18786963:18788964","CGI_shore"]
[4,18880760,18880936,177,42,0.242942831458244,0.494566668138382,-0.251623836680138,-274.129543701493,"CG","4:18825767:18882028","CGI"]
[4,19212521,19212645,125,40,0.20357719126086,0.102118460037681,0.101458731223179,175.093680925921,"CHH","4:19210834:19212834","CGI_shore"]
[4,19268680,19268799,120,35,0.285793190634307,0.11970229946979,0.166090891164517,167.70880513984,"CHH","4:19267021:19269021","CGI_shore"]
[4,19659535,19659757,223,21,0.245411352636284,0.50570563980226,-0.260294287165976,-97.991875173222,"CG","4:19658450:19660451","CGI_shore"]
[4,19683179,19683354,176,20,0.281991073037383,0.585168801412162,-0.303177728374779,-117.199238376789,"CG","4:19683300:19685300","CGI_shore"]
[4,19824188,19824369,182,33,0.125861721528901,0.0131636879608042,0.112698033568097,190.279475123867,"CHH","4:19822737:19824738","CGI_shore"]
[4,19991084,19991269,186,40,0.52483945185793,0.258077713796831,0.266761738061099,192.379210705789,"CHH","4:19989314:19991314","CGI_shore"]
[4,20123918,20123991,74,22,0.156616782904354,0.00813310116134472,0.148483681743009,111.291382058195,"CHH","Os04g0405500","promoter","Os04g0405500","Conserved hypothetical protein && - && -"]
[4,20232748,20232909,162,60,0.132502408789825,0.080742750747363,0.0517596580424617,294.239783077335,"CHH","4:20232824:20233529","CGI"]
[4,20357103,20357269,167,62,0.371744913887604,0.210903534925106,0.160841378962497,321.224264233898,"CHH","4:20355684:20357685","CGI_shore"]
[4,20421351,20421492,142,28,0.363771034829338,0.113018105886905,0.250752928942433,173.080799133554,"CHH","Os04g0413500","promoter","GRAIN  INCOMPLETE FILLING 1","Cell-wall invertase, Carbon partitioning during early grain fillin && sp|Q0JDC5|INV2_ORYSJ Beta-fructofuranosidase, insoluble isoenzyme 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CIN2 PE=1 SV=1 && PF00251:Glycosyl hydrolases family 32 N-terminal domain|PF08244:Glycosyl hydrolases family 32 C terminal"]
[4,20944001,20944192,192,7,0.375155803550944,0.686725574599229,-0.311569771048285,-35.2511845871503,"CG","Os04g0423600","exon","SET protein 18","SET domain containing protein && sp|Q3ECY6|SDG41_ARATH Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana OX=3702 GN=SDG41 PE=2 SV=1 && -"]
[4,21073017,21073195,179,33,0.110686481977602,0.033038049426287,0.0776484325513151,132.513412258424,"CHH","4:21071694:21073695","CGI_shore"]
[4,21276732,21276875,144,65,0.090191403105131,0.0186623927238252,0.0715290103813058,400.233314309527,"CHH","Os04g0429400","exon","basic helix-loop-helix protein 144, endosperm-specific gene 65","Helix-loop-helix DNA-binding domain containing protein && - && PF00010:Helix-loop-helix DNA-binding domain"]
[4,21319639,21319732,94,32,0.680966154726245,0.869871545496296,-0.18890539077005,-152.276846745839,"CG","Os04g0429900","exon","Os04g0429900","Conserved hypothetical protein && - && -"]
[4,21560064,21560328,265,79,0.436381406548899,0.261439612087466,0.174941794461433,469.672602610515,"CHH","4:21559923:21561924","CGI_shore"]
[4,21736979,21737149,171,41,0.120743702757271,0.0570489338697798,0.063694768887491,182.862348763272,"CHH","Os04g0436900","intron","Os04g0436900","Hypothetical protein && - && -"]
[4,22167350,22167499,150,31,0.361828224944218,0.111187175290121,0.250641049654097,221.094849113739,"CHH","4:22166258:22168258","CGI_shore"]
[4,22248774,22248834,61,20,0.203811708886491,0.117710261479205,0.0861014474072859,87.5072799660137,"CHH","4:22247242:22249242","CGI_shore"]
[4,22559869,22559924,56,19,0.354104440461676,0.0397255956021827,0.314378844859493,121.096185340706,"CHH","4:22559003:22560274","CGI"]
[4,22803319,22803439,121,33,0.091384385567048,0.0200315584596511,0.0713528271073969,187.756753039719,"CHH","Os04g0455800","intron","LIP1","Similar to Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate synthase) (mLIP1) && sp|Q7XRF1|LIAS_ORYSJ Lipoyl synthase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=LIP1 PE=2 SV=2 && PF04055:Radical SAM superfamily|PF16881:N-terminal domain of lipoyl synthase of Radical_SAM family"]
[4,22975671,22975744,74,17,0.243061062764652,0.00925094915289957,0.233810113611752,77.0025563766787,"CHH","4:22973747:22975747","CGI_shore"]
[4,23131382,23131505,124,14,0.131452073723823,0.032974766849577,0.098477306874246,77.0209358009892,"CHH","Os04g0463300","promoter","Os04g0463300","Pentatricopeptide repeat containing protein && sp|Q6MWE5|VIT1_ORYSJ Vacuolar iron transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=VIT1 PE=2 SV=1 && -"]
[4,23378905,23379108,204,48,0.540312846050242,0.338829914344057,0.201482931706186,229.336115042611,"CHH","Os04g0467901","promoter","Os04g0467901","Plant-specific kinesin-14, Processive minus-end-directed microtubule moto && sp|Q8W1Y3|KN14F_ARATH Kinesin-like protein KIN-14F OS=Arabidopsis thaliana OX=3702 GN=KIN14F PE=1 SV=2 && -"]
[4,23823734,23823854,121,50,0.326597205554737,0.155399483255045,0.171197722299692,238.488042615625,"CHH","4:23823171:23823779","CGI"]
[4,23981416,23981513,98,9,0.153789291668262,0.554682867505291,-0.400893575837029,-46.8463374549255,"CG","4:23979057:23982464","CGI"]
[4,24110844,24110904,61,19,0.198833626820642,0.108768905765484,0.0900647210551577,82.4884518462514,"CHH","Os04g0482100","intron","Methionine sulfoxide reductase A2.2","Similar to H0510A06.16 protein && sp|Q7XUP6|MSR22_ORYSJ Peptide methionine sulfoxide reductase A2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=MSRA2-2 PE=2 SV=2 && PF01625:Peptide methionine sulfoxide reductase"]
[4,24152402,24152463,62,7,0.663255969235029,0.79709828296151,-0.133842313726481,-26.0298235894282,"CHG","4:24151850:24153851","CGI_shore"]
[4,24192091,24192162,72,19,0.132701268329475,0.0501312517219165,0.0825700166075585,91.2909584123916,"CHH","4:24190307:24192308","CGI_shore"]
[4,24409673,24409799,127,24,0.207800569738675,0.070554235680088,0.137246334058587,135.089582955158,"CHH","4:24408885:24410885","CGI_shore"]
[4,24691394,24691464,71,30,0.164268360974591,0.0660903646745122,0.0981779963000791,166.423747097284,"CHH","4:24691329:24693267","CGI"]
[4,24901822,24901991,170,36,0.260362602968482,0.0681243380162843,0.192238264952197,183.941588260509,"CHH","4:24901734:24903735","CGI_shore"]
[4,25258719,25258814,96,24,0.09868650300573,0.0356522014091513,0.0630343015965788,111.135472412068,"CHH","4:25258524:25260525","CGI_shore"]
[4,25601846,25601974,129,27,0.00775593144615218,0.151098128633495,-0.143342197187343,-172.392784367359,"CHH","Os04g0512200","exon","Os04g0512200","CER1 && sp|Q7XPZ4|GLO17_ORYSJ Very-long-chain aldehyde decarbonylase GL1-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GL1-7 PE=2 SV=3 && -"]
[4,25746226,25746419,194,30,0.304013036693351,0.0991257092277612,0.204887327465589,159.94441386593,"CHH","4:25745333:25747334","CGI_shore"]
[4,25947081,25947242,162,37,0.147556918346013,0.0233215036855239,0.124235414660489,164.03912152297,"CHH","Os04g0518650","promoter","Os04g0518650","Similar to OSIGBa0102I15.5 protein && - && -"]
[4,26123512,26123664,153,44,0.138877485197002,0.0154444105484011,0.123433074648601,206.165321206437,"CHH","4:26123094:26125095","CGI_shore"]
[4,26305075,26305270,196,57,0.238171756557443,0.113314417460394,0.124857339097049,341.995840304024,"CHH","Os04g0525900","intron","Os04g0525900","Major facilitator superfamily protein && sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g64500 PE=2 SV=1 && PF07690:Major Facilitator Superfamily"]
[4,26556878,26556939,62,18,0.126682703283983,0.0338129333582127,0.0928697699257705,92.8996764852078,"CHH","4:26556560:26558560","CGI_shore"]
[4,26722432,26722586,155,41,0.168485253848922,0.421264708437703,-0.252779454588781,-253.601196749624,"CG","4:26720004:26722659","CGI"]
[4,26730809,26731019,211,55,0.170447757013136,0.0617684489978706,0.108679308015265,271.89031696706,"CHH","4:26728962:26730962","CGI_shore"]
[4,26917092,26917177,86,18,0.390025356453842,0.150655493371704,0.239369863082138,106.201797967796,"CHH","Os04g0538000","intron","Os04g0538000","Tetratricopeptide TPR-1 domain containing protein && sp|F8RP11|HSOP_WHEAT Hsp70-Hsp90 organizing protein OS=Triticum aestivum OX=4565 GN=HOP PE=1 SV=1 && PF00515:Tetratricopeptide repeat|PF17830:STI1 domain|PF13414:TPR repeat"]
[4,26933184,26933302,119,52,0.240192391320531,0.109977095014399,0.130215296306132,260.459852224572,"CHH","Os04g0538400","promoter","Os04g0538400","Similar to Nodulin 21 (N-21) && sp|B7F138|VITH2_ORYSJ Vacuolar iron transporter homolog 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0538400 PE=2 SV=1 && PF01988:VIT family"]
[4,27084599,27084747,149,27,0.227021996506755,0.0240079500678575,0.203014046438897,132.766024391428,"CHH","4:27083161:27085162","CGI_shore"]
[4,27208211,27208269,59,21,0.116938351612892,0.0475829094837667,0.0693554421291255,106.991250539014,"CHH","4:27207993:27208539","CGI"]
[4,27611111,27611231,121,41,0.17258427571363,0.0919788560029784,0.0806054197106516,190.249035672955,"CHH","4:27610126:27612126","CGI_shore"]
[4,27774955,27775160,206,40,0.263945364882808,0.0474337297844776,0.21651163509833,289.844755945883,"CHH","4:27773442:27775443","CGI_shore"]
[4,27935908,27936044,137,19,0.71263224490554,0.404344159923592,0.308288084981948,86.6974393239053,"CHG","4:27918438:28005194","CGI"]
[4,28064436,28064535,100,32,0.489237874929528,0.327124040389397,0.16211383454013,149.17995520168,"CHH","4:28061676:28065246","CGI"]
[4,28335465,28335543,79,25,0.170274282535663,0.0509842534677279,0.119290029067935,123.643044254855,"CHH","Os04g0565400","promoter","CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3","cis-Zeatin-O-glucosyltransferase, Catalyze O-glucosylation of cZ and cZ-ribosid && sp|Q6JAH0|CZOG_SORBI Putative cis-zeatin O-glucosyltransferase OS=Sorghum bicolor OX=4558 GN=SB20O07.14 PE=3 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[4,28394703,28394893,191,42,0.379844476815013,0.2085052536126,0.171339223202413,193.984385171938,"CHH","4:28393863:28395864","CGI_shore"]
[4,28793631,28793751,121,18,0.188883918412996,0.0553213979442578,0.133562520468739,90.4727212093974,"CHH","4:28792400:28794400","CGI_shore"]
[4,28847937,28848028,92,29,0.302956495155384,0.168559143249785,0.1343973519056,183.910817350402,"CHH","Os04g0572700","promoter","OsWD40-107","Similar to DNA-directed RNA polymerase && sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 && -"]
[4,28967259,28967447,189,40,0.256911897016351,0.0133902175840876,0.243521679432264,249.66691865587,"CHH","4:28948053:28994877","CGI"]
[4,29254636,29254758,123,15,0.488252824235737,0.0729586213313495,0.415294202904387,105.654220142878,"CHH","Os04g0580001","exon","Os04g0580001","Hypothetical gene && - && -"]
[4,29480363,29480462,100,27,0.405043615684231,0.264748200612066,0.140295415072165,126.865722567975,"CHH","4:29479936:29481937","CGI_shore"]
[4,29796007,29796064,58,10,0.847940083863029,0.636282153997382,0.211657929865647,40.491875667329,"CG","4:29790776:29798546","CGI"]
[4,30188708,30188964,257,77,0.168624278390153,0.0207602726428379,0.147864005747315,525.643503173642,"CHH","4:30187208:30189208","CGI_shore"]
[4,30233069,30233182,114,33,0.385979084612568,0.173948707616164,0.212030376996404,189.046330852785,"CHH","4:30231683:30233683","CGI_shore"]
[4,30449809,30449907,99,35,0.278434156565083,0.138296743945498,0.140137412619585,179.572379911667,"CHH","Os04g0603400","intron","Os04g0603400","Similar to OSIGBa0118P15.3 protein && - && -"]
[4,30541808,30541908,101,26,0.478006917457799,0.291839785237983,0.186167132219816,181.322018906349,"CHH","4:30541649:30543650","CGI_shore"]
[4,30595028,30595097,70,29,0.0950532749108435,0.0374168630339337,0.0576364118769099,134.19507352786,"CHH","4:30594407:30596408","CGI_shore"]
[4,30815630,30815696,67,6,0.38708471186094,0.542269162460607,-0.155184450599666,-23.729318152245,"CHG","4:30815589:30817590","CGI_shore"]
[4,31053994,31054136,143,41,0.634803569022369,0.807074632779903,-0.172271063757534,-170.053959146595,"CG","4:31053626:31054321","CGI"]
[4,31441960,31442014,55,20,0.162272309777737,0.0676361091783318,0.0946362005994048,103.357265330982,"CHH","Os04g0619000","intron","NAC DOMAIN-CONTAINING PROTEIN 83","Similar to L1332.9 protein && sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana OX=3702 GN=NAC021 PE=1 SV=2 && PF02365:No apical meristem (NAM) protein"]
[4,31652149,31652288,140,27,0.0391393913047705,0.242224883778668,-0.203085492473898,-153.02377334265,"CHG","4:31648697:31656961","CGI"]
[4,31809147,31809260,114,29,0.151346485858694,0.0755486797222587,0.0757978061364357,120.660114601846,"CHH","4:31807357:31809357","CGI_shore"]
[4,32023162,32023398,237,94,0.422286450447785,0.229202966408499,0.193083484039287,562.187151383748,"CHH","Os04g0629600","promoter","Os04g0629600","Conserved hypothetical protein && - && PF14223:gag-polypeptide of LTR copia-type"]
[4,32129477,32129642,166,42,0.111120155516397,0.0239262011052905,0.0871939544111063,229.405494487293,"CHH","4:32091530:32147212","CGI"]
[4,32188402,32188506,105,17,0.3331481009733,0.0480131831380627,0.285134917835237,105.31614301667,"CHH","Os04g0632300","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 379","Similar to H0105C05.10 protein && sp|O81906|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana OX=3702 GN=B120 PE=2 SV=1 && PF07714:Protein tyrosine kinase|PF11883:Domain of unknown function (DUF3403)|PF08276:PAN-like domain|PF00954:S-locus glycoprotein domain"]
[4,32861972,32862093,122,17,0.27876032353287,0.560069135911154,-0.281308812378285,-81.7094812218048,"CG","Os04g0645700","utr3","Os04g0645700","Similar to H0811D08.5 protein && - && -"]
[4,32880139,32880322,184,55,0.0580523220615948,0.0146800474010774,0.0433722746605173,253.743244571838,"CHH","4:32879939:32881940","CGI_shore"]
[4,33377652,33377864,213,72,0.264037212815971,0.13055678612691,0.133480426689062,362.322216687021,"CHH","4:33376210:33378210","CGI_shore"]
[4,33527417,33527555,139,24,0.195535384671922,0.0820511006398107,0.113484284032111,131.895203960097,"CHH","4:33526054:33528054","CGI_shore"]
[4,34064601,34064667,67,15,0.142142705116687,0.0529101178282139,0.0892325872884729,73.7672285204331,"CHH","Os04g0667100","promoter","Os04g0667100","Hypothetical protein && sp|Q7XR84|FL3H3_ORYSJ Flavanone 3-dioxygenase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=F3H-3 PE=1 SV=1 && -"]
[4,34296762,34296820,59,17,0.0517587740161116,0.30844866713306,-0.256689893116949,-103.368397252685,"CHH","4:34295845:34297845","CGI_shore"]
[4,34546467,34546530,64,11,0.583690104733584,0.233820898638374,0.349869206095209,60.3608297442808,"CHG","4:34544610:34546610","CGI_shore"]
[4,34546467,34546530,64,11,0.583690104733584,0.233820898638374,0.349869206095209,60.3608297442808,"CHG","Os04g0676600","utr5","LATE-FLOWERING 2","Similar to H0101F08.6 protein && sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0676600 PE=2 SV=2 && -"]
[4,34699994,34700099,106,20,0.182663046070796,0.0218652020230038,0.160797844047792,105.007541174867,"CHH","4:34699878:34701879","CGI_shore"]
[4,35244617,35244686,70,14,0.0275385744290398,0.159715798133293,-0.132177223704253,-69.8710993557469,"CHH","4:35147217:35270441","CGI"]
[4,35396381,35396461,81,33,0.226248877352526,0.087016788227015,0.139232089125511,156.000738601066,"CHH","4:35394437:35396437","CGI_shore"]
[4,35425731,35426006,276,41,0.273249684809686,0.0489994039146785,0.224250280895007,258.864811005705,"CHH","Os04g0692100","intron","Os04g0692100","Similar to Tubulin folding cofactor B && sp|Q67Z52|TBCB_ARATH Tubulin-folding cofactor B OS=Arabidopsis thaliana OX=3702 GN=TFCB PE=1 SV=1 && PF14560:Ubiquitin-like domain|PF01302:CAP-Gly domain"]
[4,35495415,35495559,145,54,0.26473936934603,0.110635523000211,0.15410384634582,329.524797671937,"CHH","Os04g0693200","promoter","Os04g0693200","Conserved hypothetical protein && - && -"]
[4,35500951,35501027,77,20,0.237816041707184,0.415590329394454,-0.17777428768727,-109.017755585099,"CG","Os04g0693400","utr3","Os04g0693400","Hypothetical protein && sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCG5 PE=2 SV=1 && PF01061:ABC-2 type transporter"]
[5,32992,33216,225,80,0.310513796935215,0.15017315951758,0.160340637417636,438.183822244325,"CHH","5:10689:33463","CGI"]
[5,59809,59909,101,28,0.06926702789839,0.224452641114535,-0.155185613216145,-148.304065509374,"CHH","Os05g0100600","promoter","Os05g0100600","Similar to aminophospholipid ATPase && sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana OX=3702 GN=ALA9 PE=3 SV=1 && PF00122:E1-E2 ATPase|PF16209:Phospholipid-translocating ATPase N-terminal"]
[5,471045,471153,109,30,0.43823063435181,0.258250830491779,0.179979803860031,150.272419753074,"CHH","Os05g0108300","promoter","WITH NO LYSINE KINASE 2","Similar to MAP kinase-like protein && sp|Q65X23|WNK2_ORYSJ Probable serine/threonine-protein kinase WNK2 OS=Oryza sativa subsp. japonica OX=39947 GN=WNK2 PE=2 SV=1 && PF00069:Protein kinase domain"]
[5,548393,548528,136,28,0.857810667831051,0.648262823416628,0.209547844414424,141.397067559025,"CG","Os05g0110200","utr3","Os05g0110200","DVL family protein && sp|B8A9X1|RTFL3_ORYSI Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=RTFL3 PE=3 SV=1 && PF08137:DVL family"]
[5,812233,812313,81,12,0.53015634755642,0.853152265858668,-0.322995918302247,-60.7013257288175,"CG","Os05g0114800","intron","Os05g0114800","Hypothetical gene && - && -"]
[5,911344,911499,156,28,0.119274481105285,0.0108115308793711,0.108462950225914,121.888380509623,"CHH","5:910934:912934","CGI_shore"]
[5,1511250,1511362,113,27,0.463349818450629,0.837159237955381,-0.373809419504752,-130.696868607804,"CG","Os05g0126600","promoter","Os05g0126600","Hypothetical protein && - && -"]
[5,1679709,1679897,189,54,0.285850087124578,0.149774953398226,0.136075133726352,358.123187801611,"CHH","5:1679226:1681227","CGI_shore"]
[5,1936219,1936300,82,39,0.212003374492177,0.0837040445048884,0.128299329987288,187.842442397467,"CHH","5:1936184:1936652","CGI"]
[5,2004776,2004904,129,41,0.220888458604304,0.113698847355144,0.107189611249161,185.487135824193,"CHH","Os05g0134300","promoter","Os05g0134300","Protein of unknown function DUF408 family protein && sp|Q6AVZ9|RPAP2_ORYSJ Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0134300 PE=3 SV=1 && PF04181:Rtr1/RPAP2 family"]
[5,2049075,2049176,102,10,0.0162496688219419,0.223690232479853,-0.207440563657911,-55.2489001408906,"CG","5:2048749:2050750","CGI_shore"]
[5,2131984,2132205,222,60,0.0225738519671506,0.148573041761133,-0.125999189793982,-386.830802595347,"CHH","5:2131608:2132996","CGI"]
[5,2279910,2279989,80,33,0.153593114849411,0.0761680019797406,0.0774251128696707,187.403560962332,"CHH","5:2279655:2281656","CGI_shore"]
[5,2390227,2390362,136,35,0.170356816070142,0.0432721090541607,0.127084707015982,183.016070715815,"CHH","5:2388231:2390231","CGI_shore"]
[5,2527319,2527460,142,37,0.854058318349131,0.618296980354762,0.23576133799437,175.280347721536,"CG","5:2526232:2528233","CGI_shore"]
[5,2745881,2745936,56,33,0.132892380164786,0.0673010354981148,0.0655913446666715,162.09750551555,"CHH","Target=(TGG)n:3-153;Class=Simple_repeat","repeat"]
[5,2798549,2798643,95,39,0.121813221535873,0.040837461505737,0.0809757600301356,202.013243721062,"CHH","Os05g0148950","promoter","Os05g0148950","Hypothetical protein && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain"]
[5,2821260,2821315,56,20,0.214513221249,0.0629995487214582,0.151513672527541,87.5836677816325,"CG","Os05g0149300","exon","Os05g0149300","Similar to 1-aminocyclopropane-1-carboxylate oxidase && sp|Q9FR99|ACCO_MUSAC 1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata OX=4641 GN=MAO1B PE=3 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily"]
[5,3430337,3430581,245,79,0.12505473551776,0.0601618666716786,0.0648928688460811,365.965795059084,"CHH","5:3428779:3430779","CGI_shore"]
[5,3470264,3470334,71,19,0.13280222897109,0.0563420560467313,0.0764601729243583,89.5853260900328,"CHH","Os05g0158700","promoter","Os05g0158700","Similar to OsGA2ox1 && sp|Q5W726|G2OX1_ORYSJ Gibberellin 2-beta-dioxygenase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GA2OX1 PE=1 SV=1 && -"]
[5,3514889,3515040,152,55,0.0274633259416039,0.187570287552597,-0.160106961610993,-308.054005659135,"CHH","5:3514061:3515091","CGI"]
[5,3619079,3619147,69,17,0.148625575685066,0.0578178451530241,0.0908077305320419,106.747716478531,"CHH","Os05g0161400","exon","Os05g0161400","Peptidase, trypsin-like serine and cysteine domain containing protein && - && PF13365:Trypsin-like peptidase domain"]
[5,3975424,3975623,200,56,0.189571714611799,0.0451360939740153,0.144435620637783,278.511658472393,"CHH","5:3975250:3976028","CGI"]
[5,4031896,4031987,92,7,0.359764338216146,0.764835505619912,-0.405071167403766,-44.6576788194256,"CG","5:4004283:4072277","CGI"]
[5,4176301,4176359,59,10,0.0297633867126802,0.180541143587276,-0.150777756874596,-51.8595748695782,"CHG","Os05g0169600","exon","Os05g0169600","Serine/threonine protein kinase domain containing protein && sp|C0LGV1|RGI2_ARATH LRR receptor-like serine/threonine-protein kinase RGI2 OS=Arabidopsis thaliana OX=3702 GN=RGI2 PE=1 SV=1 && PF00069:Protein kinase domain"]
[5,4176301,4176359,59,10,0.0297633867126802,0.180541143587276,-0.150777756874596,-51.8595748695782,"CHG","Os05g0169700","intron","Os05g0169700","Similar to Sugar transporter family protein, expressed && sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana OX=3702 GN=STP11 PE=1 SV=1 && -"]
[5,4226759,4226961,203,46,0.213541441038354,0.0524211324315187,0.161120308606835,335.40602176155,"CHH","Os05g0170600","TSS","CLV3/ESR-related 503, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 503","Similar to CLE family OsCLE503 protein && - && -"]
[5,4245653,4245773,121,8,0.234460874360992,0.514901759452113,-0.28044088509112,-46.3351130170867,"CG","Os05g0170800","intron","SKIP interacting protein 10, SKIPa-interacting protein 10, SKIPa-interacting protein 10","ApaG domain containing protein && sp|Q2VZE7|APAG_MAGSA Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=apaG PE=3 SV=1 && PF04379:ApaG domain"]
[5,4557214,4557276,63,12,0.257462391173111,0.0611030528286399,0.196359338344471,93.6704508828711,"CHH","5:4556373:4558373","CGI_shore"]
[5,4558398,4558591,194,66,0.230097071189143,0.095918063732548,0.134179007456595,379.097413047289,"CHH","5:4557280:4559280","CGI_shore"]
[5,4775545,4775693,149,51,0.205520491287432,0.0612490509426511,0.144271440344781,290.985703130022,"CHH","5:4774956:4776957","CGI_shore"]
[5,4835929,4836069,141,28,0.21146461031989,0.0936246205163632,0.117839989803527,150.103591332478,"CHH","5:4835647:4837648","CGI_shore"]
[5,4866940,4867044,105,28,0.200047615292935,0.0693256899190439,0.130721925373891,145.479308918922,"CHH","5:4865754:4867755","CGI_shore"]
[5,4869763,4870088,326,69,0.404592659834025,0.186735863143596,0.217856796690429,383.203776201811,"CHH","5:4869209:4871210","CGI_shore"]
[5,5078357,5078441,85,23,0.0866565307674842,0.0248499016401286,0.0618066291273556,112.012192880025,"CHH","5:5076935:5078936","CGI_shore"]
[5,5169162,5169262,101,16,0.859320157203089,0.561525565358808,0.297794591844281,69.8613879865519,"CG","5:5169027:5170235","CGI"]
[5,5398632,5398704,73,15,0.110711836349167,0.0206418658156564,0.0900699705335103,82.5583075127141,"CHH","Os05g0187800","promoter","DER1","DERLIN-like protein, ER-associated protein degradation factor, Response to ER stres && sp|Q06397|DERL1_ORYSJ Derlin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=DER1 PE=2 SV=2 && PF04511:Der1-like family"]
[5,5537700,5537766,67,20,0.11141226561905,0.0160490607157317,0.0953632049033182,101.018713265113,"CHH","Os05g0190300","promoter","Os05g0190300","Acid phosphatase (Class B) family protein && sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum OX=4081 GN=APS1 PE=2 SV=1 && PF03767:HAD superfamily, subfamily IIIB (Acid phosphatase)"]
[5,6001751,6001996,246,69,0.640242759444468,0.440793012206913,0.199449747237554,379.961876308307,"CHH","Os05g0197300","promoter","Os05g0197300","IQ calmodulin-binding region domain containing protein && sp|Q058N0|IQM5_ARATH IQ domain-containing protein IQM5 OS=Arabidopsis thaliana OX=3702 GN=IQM5 PE=2 SV=1 && -"]
[5,6184547,6184657,111,19,0.24756728965873,0.00658532781391025,0.240981961844819,96.983752734958,"CHH","5:6178887:6190414","CGI"]
[5,6705531,6705664,134,19,0.216987792846393,0.508723462202797,-0.291735669356403,-97.5546625966258,"CHG","5:6705271:6705606","CGI"]
[5,6722522,6722589,68,14,0.497089778348508,0.868085471636396,-0.370995693287887,-73.7512215242335,"CG","Os05g0208500","utr3","Os05g0208500","Hypothetical protein && - && -"]
[5,6865732,6865890,159,53,0.325056489634502,0.190754274582641,0.134302215051862,268.233132236795,"CHH","5:6865621:6867622","CGI_shore"]
[5,6947544,6947734,191,37,0.194319777739928,0.397887732295019,-0.20356795455509,-186.067729455005,"CHH","5:6945793:6947793","CGI_shore"]
[5,7342994,7343055,62,16,0.130369555695105,0.0111275067945764,0.119242048900529,102.471504829219,"CHH","5:7341365:7343366","CGI_shore"]
[5,7511942,7512014,73,23,0.0919124357622422,0.00787851538276328,0.0840339203794789,102.396411273807,"CHH","5:7510046:7512046","CGI_shore"]
[5,7678354,7678409,56,15,0.063274734670225,0.0093476556072043,0.0539270790630207,72.9590425846476,"CHH","5:7677139:7679140","CGI_shore"]
[5,7801112,7801203,92,11,0.320056952564592,0.624113156194364,-0.304056203629772,-47.6024947510977,"CHG","5:7799778:7801778","CGI_shore"]
[5,8190211,8190306,96,49,0.0892313381333835,0.0319914378362256,0.0572399002971579,217.241955547657,"CHH","5:8190073:8192073","CGI_shore"]
[5,8205636,8205765,130,40,0.375155211494446,0.55619000613244,-0.181034794637995,-209.278445639248,"CHG","5:8205762:8207762","CGI_shore"]
[5,8655832,8655904,73,25,0.0615979331404291,0.018847871188053,0.0427500619523761,112.213385088796,"CHH","5:8655134:8657135","CGI_shore"]
[5,8704466,8704543,78,26,0.815441817587997,0.522156020759842,0.293285796828155,120.94081828493,"CG","Os05g0243300","promoter","Ribosomal protein L13, mitochondrial ribosomal protein L13, mitochondrial RPL13","Similar to 50S ribosomal protein L13 && sp|Q1AU63|RL13_RUBXD 50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=rplM PE=3 SV=2 && PF00572:Ribosomal protein L13"]
[5,8839347,8839522,176,53,0.450898754377643,0.667191313719812,-0.216292559342168,-276.208920848161,"CG","Os05g0244800","utr5","Os05g0244800","Hypothetical protein && - && PF08711:TFIIS helical bundle-like domain"]
[5,8840867,8841086,220,49,0.24378396318043,0.0551772274103317,0.188606735770098,283.422303491357,"CHH","Os05g0244800","promoter","Os05g0244800","Hypothetical protein && - && PF08711:TFIIS helical bundle-like domain"]
[5,9074571,9074682,112,34,0.107747378970508,0.00455130239612809,0.10319607657438,159.621569107351,"CHH","5:9072834:9074834","CGI_shore"]
[5,9108789,9108869,81,4,0.193823225161229,0.479468948731296,-0.285645723570067,-22.9486713550499,"CG","5:9108579:9122792","CGI"]
[5,9172201,9172265,65,18,0.120317244142239,0.0169408624477348,0.103376381694505,77.3349280696288,"CHH","5:9171721:9173722","CGI_shore"]
[5,9539493,9539589,97,33,0.248871135480965,0.0830726813742123,0.165798454106753,181.066814359135,"CHH","5:9539427:9541428","CGI_shore"]
[5,10130131,10130208,78,23,0.112721630856234,0.0448597893700764,0.0678618414861574,106.646219316153,"CHH","5:10129221:10131221","CGI_shore"]
[5,10422682,10422772,91,24,0.0261075988308808,0.130105172127053,-0.103997573296172,-100.779981536458,"CHH","5:10412701:10445823","CGI"]
[5,10588415,10588502,88,14,0.248220890644505,0.489512334612839,-0.241291443968334,-60.1384042596338,"CHG","5:10586619:10588619","CGI_shore"]
[5,10588415,10588502,88,14,0.248220890644505,0.489512334612839,-0.241291443968334,-60.1384042596338,"CHG","5:10588436:10590437","CGI_shore"]
[5,10736006,10736172,167,56,0.112125055380977,0.0413643519264636,0.0707607034545132,283.828469594411,"CHH","5:10735744:10737745","CGI_shore"]
[5,10802163,10802314,152,26,0.721486231664652,0.514361556133162,0.20712467553149,139.254050239813,"CG","Os05g0269000","intron","Os05g0269000","Hypothetical conserved gene && - && -"]
[5,10928106,10928186,81,27,0.199560083778969,0.0462004463847026,0.153359637394266,131.366063203021,"CHH","5:10927562:10929563","CGI_shore"]
[5,11098075,11098218,144,42,0.142076627017607,0.0629945373410642,0.079082089676543,179.00055403622,"CHH","5:11096743:11098743","CGI_shore"]
[5,11433376,11433486,111,24,0.176811315746795,0.0653319003927118,0.111479415354083,129.602764920792,"CHH","5:11432144:11434144","CGI_shore"]
[5,12072762,12072824,63,4,0.684714920378452,0.215997185032173,0.468717735346279,22.6993999527937,"CHG","5:12072486:12074486","CGI_shore"]
[5,12609878,12609936,59,25,0.03450927028104,0.00792173777824019,0.0265875325027998,116.003459525888,"CHH","5:12608718:12610719","CGI_shore"]
[5,12659027,12659142,116,42,0.0894502127955346,0.0190411847545887,0.0704090280409459,206.006627582784,"CHH","5:12658973:12659288","CGI"]
[5,12809812,12809931,120,49,0.300223842824748,0.138617926435783,0.161605916388965,307.381194141234,"CHH","5:12809834:12811835","CGI_shore"]
[5,12834328,12834424,97,23,0.270977902032615,0.164564348603435,0.10641355342918,101.691622615711,"CHH","5:12833024:12835025","CGI_shore"]
[5,12959892,12960049,158,23,0.0413944290695495,0.118990990904823,-0.0775965618352732,-85.883490294524,"CG","5:12960031:12962031","CGI_shore"]
[5,12959965,12960023,59,8,0.0131979235089975,0.0644371275284303,-0.0512392040194328,-33.9702061994205,"CHG","ENSRNA049472487","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[5,13278486,13278728,243,30,0.470346154165729,0.16350419750055,0.306841956665179,159.824282732222,"CHG","Os05g0297800","utr5","Os05g0297800","Conserved hypothetical protein && - && -"]
[5,13321626,13321723,98,34,0.113286620480512,0.020425880757773,0.0928607397227391,188.044694327139,"CHH","5:13319948:13321948","CGI_shore"]
[5,13690934,13691197,264,70,0.125814911779017,0.0428404757041577,0.0829744360748597,347.570571726879,"CHH","5:13689889:13691889","CGI_shore"]
[5,13799855,13800042,188,69,0.117934671203441,0.0220277398712871,0.0959069313321543,459.333260830844,"CHH","Os05g0305300","promoter","Os05g0305300","Hypothetical conserved gene && sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1 && PF14432:DYW family of nucleic acid deaminases|PF13041:PPR repeat family"]
[5,13958984,13959034,51,9,0.0482576732901853,0.170075549919077,-0.121817876628892,-48.8136018812504,"CHG","5:13957706:13959706","CGI_shore"]
[5,14219638,14219761,124,42,0.0874583700941411,0.0470176491908263,0.0404407209033148,171.593817789115,"CHH","5:14217836:14219836","CGI_shore"]
[5,14752058,14752296,239,69,0.123693159068382,0.0402237819822543,0.0834693770861278,376.554204953942,"CHH","Os05g0318100","intron","Os05g0318100","Similar to Protein kinase-related protein && sp|Q9LZM4|WAKLQ_ARATH Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana OX=3702 GN=WAKL20 PE=2 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[5,14922146,14922330,185,33,0.623693073523539,0.238096196778281,0.385596876745259,276.872303009571,"CG","5:14910339:14929199","CGI"]
[5,15067698,15067833,136,20,0.336528854222396,0.154199853541848,0.182329000680548,112.679919246434,"CHH","Os05g0324400","promoter","Os05g0324400","Hypothetical protein && - && PF04578:Protein of unknown function, DUF594|PF13968:Domain of unknown function (DUF4220)"]
[5,15268534,15268612,79,20,0.108406402689898,0.0228569975024679,0.0855494051874306,106.464327578567,"CHH","5:15268457:15270458","CGI_shore"]
[5,15690710,15690815,106,29,0.312368721281143,0.187823504695857,0.124545216585286,136.437276273473,"CHH","5:15689046:15691047","CGI_shore"]
[5,15708191,15708358,168,47,0.278029974648825,0.150912988201695,0.12711698644713,253.675938344028,"CHH","5:15706322:15708322","CGI_shore"]
[5,15739978,15740059,82,30,0.134071688156268,0.0712144999489743,0.062857188207294,125.922830356809,"CHH","5:15738202:15740202","CGI_shore"]
[5,15788381,15788535,155,38,0.124073502986104,0.0322409395282731,0.0918325634578304,180.284408980013,"CHH","5:15787426:15789427","CGI_shore"]
[5,16059192,16059322,131,28,0.120330186147438,0.0138997519954452,0.106430434151993,148.435466583691,"CHH","Os05g0342100","promoter","Os05g0342100","Wound-induced protein, Wun1 domain containing protein && - && PF07107:Wound-induced protein WI12"]
[5,16148885,16148938,54,17,0.146465656354276,0.0556057550081604,0.0908599013461156,103.098287692742,"CHH","5:16147840:16149840","CGI_shore"]
[5,16343149,16343373,225,45,0.243138011631672,0.106815279985171,0.136322731646502,241.373509145548,"CHH","5:16341931:16343932","CGI_shore"]
[5,16425168,16425245,78,20,0.157941277448783,0.0506846421260122,0.107256635322771,103.783614994863,"CHH","5:16423337:16425338","CGI_shore"]
[5,16580182,16580251,70,28,0.158580101441728,0.0280844784072838,0.130495623034445,171.12338230957,"CHH","5:16580245:16580751","CGI"]
[5,16602891,16603076,186,69,0.100043101837749,0.037807249977001,0.0622358518607483,339.983191636056,"CHH","Os05g0351200","promoter","ETHYLENE RESPONSE FACTOR 117","Similar to AP2 domain transcription factor && sp|C7J2Z1|ABI4_ORYSJ Ethylene-responsive transcription factor ABI4 OS=Oryza sativa subsp. japonica OX=39947 GN=ABI4 PE=3 SV=1 && PF00847:AP2 domain"]
[5,16656888,16656939,52,14,0.172107467836147,0.0722839813014243,0.0998234865347228,76.5706335257598,"CHH","5:16656055:16656913","CGI"]
[5,16884081,16884180,100,19,0.38352774536176,0.218402675489692,0.165125069872068,93.9389363157042,"CHH","5:16883717:16885717","CGI_shore"]
[5,16986979,16987091,113,39,0.798477462703671,0.572383382222634,0.226094080481037,171.316977475756,"CG","Os05g0357850","utr5","Os05g0357850","Conserved hypothetical protein && - && -"]
[5,17133012,17133199,188,27,0.284012103897376,0.0416686791728719,0.242343424724504,143.278900986032,"CHH","5:17131038:17133039","CGI_shore"]
[5,17319244,17319413,170,48,0.0176382111350439,0.0660965983641499,-0.048458387229106,-212.732981846572,"CHH","Os05g0362600","exon","LATE EMBRYOGENESIS ABUNDANT PROTEIN 12","Late embryogenesis abundant protein, LEA-5 domain containing protein && sp|Q93WF6|SAG21_ARATH Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1 && PF03242:Late embryogenesis abundant protein"]
[5,17416073,17416189,117,30,0.108855602287594,0.0234766635196089,0.0853789387679846,160.444477970485,"CHH","5:17414153:17416153","CGI_shore"]
[5,17521820,17521896,77,15,0.280559429538644,0.437309303637237,-0.156749874098593,-64.9720945531357,"CG","Os05g0365500","promoter","Os05g0365500","Tetratricopeptide-like helical domain containing protein && sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana OX=3702 GN=GRP23 PE=1 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[5,17521820,17521896,77,15,0.280559429538644,0.437309303637237,-0.156749874098593,-64.9720945531357,"CG","Os05g0365450","utr5","Os05g0365450","Similar to GNS1/SUR4 membrane protein && - && -"]
[5,17667252,17667565,314,89,0.177500352743803,0.068525210604229,0.108975142139574,535.51961799903,"CHH","5:17665381:17667382","CGI_shore"]
[5,17828586,17828658,73,33,0.361739170708373,0.218666105789468,0.143073064918905,170.926320261424,"CHH","5:17828627:17830627","CGI_shore"]
[5,18028834,18028960,127,27,0.0763551888425656,0.00984286429897662,0.066512324543589,167.072195218338,"CHH","Os05g0374000","intron","Os05g0374000","Hypothetical protein && sp|Q75K78|CKX9_ORYSJ Cytokinin dehydrogenase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=CKX9 PE=2 SV=1 && -"]
[5,18303707,18303770,64,15,0.12282620932012,0.014052753187381,0.108773456132739,88.3562098886308,"CHH","5:18301985:18303986","CGI_shore"]
[5,18389978,18390038,61,4,0.603657865059648,0.183423568860003,0.420234296199645,18.607527400112,"CHG","5:18389031:18391031","CGI_shore"]
[5,18453357,18453428,72,20,0.181876736018161,0.0226522291403689,0.159224506877792,93.7784053422528,"CHH","5:18451806:18453806","CGI_shore"]
[5,18713421,18713689,269,70,0.409868166820804,0.225849607166537,0.184018559654267,439.954224746707,"CHH","Os05g0386400","promoter","Os05g0386400","Conserved hypothetical protein && - && PF16719:SAWADEE domain"]
[5,18736548,18736612,65,19,0.213151352228316,0.0996703831753048,0.113480969053011,94.0153721213576,"CHH","5:18734742:18736743","CGI_shore"]
[5,18751831,18751924,94,29,0.272696259381063,0.145200078440037,0.127496180941025,134.143654389167,"CHH","5:18750575:18752575","CGI_shore"]
[5,18860190,18860315,126,22,0.400479059306193,0.218709081499679,0.181769977806513,119.359892713275,"CHH","5:18859660:18861661","CGI_shore"]
[5,19203629,19203884,256,108,0.117980552583607,0.0346659815887512,0.0833145709948556,604.387221619041,"CHH","5:19202294:19204294","CGI_shore"]
[5,19282891,19282970,80,19,0.80687394184951,0.436625011764719,0.37024893008479,91.1136203121382,"CG","Os05g0395850","exon","Os05g0395850","Hypothetical protein && sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis OX=3988 GN=HEX6 PE=2 SV=1 && -"]
[5,19591345,19591638,294,107,0.232472575234011,0.102645143073954,0.129827432160057,618.318809463664,"CHH","Os05g0402300","promoter","Os05g0402300","Uncharacterised protein family UPF0005 domain containing protein && sp|Q94A20|LFG5_ARATH BI1-like protein OS=Arabidopsis thaliana OX=3702 GN=LFG5 PE=2 SV=1 && PF01027:Inhibitor of apoptosis-promoting Bax1"]
[5,19608894,19608955,62,14,0.102543726491808,0.0167724471050408,0.0857712793867673,104.332262760728,"CHH","5:19608716:19610717","CGI_shore"]
[5,19715357,19715504,148,25,0.337299663599189,0.623147665068172,-0.285848001468984,-107.17363687041,"CHG","Os05g0404901","utr3","Os05g0404901","Conserved hypothetical protein && - && -"]
[5,19715378,19715475,98,24,0.532820697975837,0.818929723682955,-0.286109025707118,-104.146633823299,"CG","Os05g0404901","exon","Os05g0404901","Conserved hypothetical protein && - && -"]
[5,19905369,19905538,170,25,0.174959148688701,0.0103486767118373,0.164610471976864,126.612634281326,"CHH","5:19905337:19907337","CGI_shore"]
[5,19967365,19967487,123,33,0.289003028519595,0.146999431096468,0.142003597423127,177.518391900758,"CHH","5:19965646:19967646","CGI_shore"]
[5,20123383,20123438,56,20,0.182923472213413,0.030242058183584,0.152681414029829,90.1716733331765,"CHH","5:20121725:20123726","CGI_shore"]
[5,20205783,20205968,186,54,0.196920012116786,0.0805414085042096,0.116378603612576,318.766318025907,"CHH","Os05g0413332","intron","Os05g0413332","Hypothetical protein && sp|Q76FS3|TBB6_ORYSJ Tubulin beta-6 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB6 PE=2 SV=1 && PF03953:Tubulin C-terminal domain|PF00091:Tubulin/FtsZ family, GTPase domain"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","Os05g0415600","utr3","Os05g0415600","Similar to Beta-hexosaminidase beta chain precursor (EC 3.2.1.52) (N-acetyl-beta- glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B) && sp|Q8L7S6|HEXO3_ARATH Beta-hexosaminidase 3 OS=Arabidopsis thaliana OX=3702 GN=HEXO3 PE=1 SV=1 && -"]
[5,20426510,20426746,237,79,0.184639208719566,0.0900832676266776,0.0945559410928888,403.553212206586,"CHH","5:20425827:20427828","CGI_shore"]
[5,20694915,20695011,97,19,0.179408434459771,0.0306755747645369,0.148732859695235,107.223979000867,"CHH","5:20693223:20695223","CGI_shore"]
[5,20716180,20716283,104,9,0.0442720180105824,0.325013111742069,-0.280741093731487,-44.305723370041,"CHG","5:20714514:20716515","CGI_shore"]
[5,20802776,20802852,77,19,0.141516664962286,0.0558624780640636,0.0856541868982219,87.3015806970062,"CHH","5:20801975:20803032","CGI"]
[5,20846259,20846329,71,9,0.538685616205544,0.863785306841914,-0.325099690636371,-45.9814927232328,"CG","5:20845791:20847500","CGI"]
[5,20934277,20934625,349,96,0.178342091432894,0.0685062411609157,0.109835850271978,546.577246702133,"CHH","Os05g0426900","promoter","Os05g0426900","Conserved hypothetical protein && - && -"]
[5,21196450,21196572,123,39,0.121469512798375,0.0486731322310382,0.072796380567337,188.119119575601,"CHH","Os05g0432200","promoter","Os05g0432200","Similar to Gibberellin-regulated protein 2 precursor && sp|P46688|GASA2_ARATH Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1 && -"]
[5,21458285,21458382,98,26,0.375180335639014,0.211920845548236,0.163259490090778,113.735051046054,"CHH","5:21456824:21458824","CGI_shore"]
[5,21483017,21483126,110,17,0.676662056387001,0.307065194153313,0.369596862233688,90.0971194336919,"CHG","Os05g0438201","exon","Os05g0438201","Conserved hypothetical protein && - && -"]
[5,21554081,21554404,324,96,0.316878327723075,0.183884044201369,0.132994283521706,544.375950955194,"CHH","5:21553583:21555583","CGI_shore"]
[5,21677873,21678081,209,51,0.229609415758348,0.0533631292237837,0.176246286534564,280.228684394559,"CHH","5:21677182:21679182","CGI_shore"]
[5,21703789,21703986,198,26,0.289284987667393,0.095354412209465,0.193930575457927,160.821255640537,"CHH","Os05g0443400","promoter","Os05g0443400","Similar to Glucan endo-1,3-beta-glucosidase 7 && sp|Q9ZQG9|E1314_ARATH Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana OX=3702 GN=At2g27500 PE=2 SV=2 && PF00332:Glycosyl hydrolases family 17"]
[5,22042851,22043002,152,31,0.315171519790309,0.114536714471335,0.200634805318974,171.100499807019,"CHH","5:22037981:22048589","CGI"]
[5,22163472,22163557,86,39,0.276267235410026,0.150223753552958,0.126043481857068,173.712982211873,"CHH","5:22162333:22164333","CGI_shore"]
[5,22260124,22260206,83,18,0.164882913705933,0.0371738143689121,0.127709099337021,93.429724098626,"CHH","5:22258388:22262059","CGI"]
[5,22434028,22434123,96,15,0.604963919427035,0.817207837035472,-0.212243917608437,-72.186086622076,"CHG","Os05g0456800","promoter","Os05g0456800","Hypothetical gene && - && -"]
[5,22504996,22505050,55,14,0.154933044210236,0.0765486809640503,0.0783843632461861,68.9896783554958,"CHH","5:22503648:22505648","CGI_shore"]
[5,23085536,23085602,67,8,0.334409841466512,0.667814747525531,-0.333404906059019,-37.8892372275406,"CHG","5:23054050:23089600","CGI"]
[5,23310014,23310089,76,24,0.0866035846255524,0.0178758823130401,0.0687277023125123,131.806931605412,"CHH","5:23308811:23310812","CGI_shore"]
[5,23392654,23392857,204,47,0.126529980590053,0.00829215380968968,0.118237826780363,289.622884656284,"CHH","5:23392459:23394460","CGI_shore"]
[5,23453338,23453521,184,48,0.331062931078364,0.169425564943675,0.161637366134689,263.709296221631,"CHH","5:23453145:23455146","CGI_shore"]
[5,23671025,23671139,115,35,0.190370281186284,0.0509383620639331,0.139431919122351,233.292821894803,"CHH","5:23669125:23671126","CGI_shore"]
[5,23973452,23973564,113,37,0.128978036861673,0.0283433487269764,0.100634688134697,222.08597582352,"CHH","5:23972149:23974149","CGI_shore"]
[5,24172735,24172818,84,4,0.117269383933047,0.602615266817208,-0.485345882884161,-22.0826294828078,"CG","5:24171924:24173924","CGI_shore"]
[5,24312488,24312667,180,54,0.32774494588736,0.149291667975418,0.178453277911942,237.850905409228,"CHH","Os05g0495100","promoter","Os05g0495100","Zinc finger, C2H2-type domain containing protein && sp|Q9M8S7|ARS1_ARATH Protein ABA AND ROS SENSITIVE 1 OS=Arabidopsis thaliana OX=3702 GN=ARS1 PE=1 SV=1 && -"]
[5,24851151,24851238,88,19,0.262319226949314,0.579695844758253,-0.31737661780894,-101.874347892217,"CHG","5:24850264:24852264","CGI_shore"]
[5,25022170,25022332,163,22,0.596936799887205,0.29087304870611,0.306063751181096,110.413631009045,"CG","5:25022140:25022369","CGI"]
[5,25158189,25158258,70,22,0.0946000654325918,0.0293502593584752,0.0652498060741166,106.182402155065,"CHH","Os05g0508400","promoter","Os05g0508400","Mannose-binding lectin domain containing protein && sp|F4HQX1|JAL3_ARATH Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 && PF01419:Jacalin-like lectin domain"]
[5,25531341,25531548,208,46,0.191655790082853,0.056781668234944,0.134874121847909,264.382260411148,"CHH","5:25531101:25533102","CGI_shore"]
[5,25619502,25619629,128,31,0.334669218219457,0.193297999288273,0.141371218931184,151.792216747143,"CHH","5:25618304:25620305","CGI_shore"]
[5,25778978,25779065,88,15,0.484324540477865,0.26075020983005,0.223574330647815,96.4624435210624,"CHH","Os05g0519300","promoter","Os05g0519300","Protein of unknown function DUF506, plant family protein && - && PF04720:PDDEXK-like family of unknown function"]
[5,26058387,26058451,65,27,0.0124382486176598,0.11588211490221,-0.10344386628455,-126.206090389701,"CHH","5:26057945:26059946","CGI_shore"]
[5,26151012,26151238,227,65,0.249436632317338,0.112466651617804,0.136969980699535,339.102437938078,"CHH","5:26150329:26154689","CGI"]
[5,26202980,26203114,135,29,0.179697029330648,0.0389569402723146,0.140740089058334,181.640280723179,"CHH","5:26202817:26204818","CGI_shore"]
[5,26315019,26315091,73,22,0.184167853711456,0.0997649102750017,0.0844029434364545,93.0493920533779,"CHH","5:26314209:26316210","CGI_shore"]
[5,26317171,26317299,129,29,0.441254522400265,0.185245922396416,0.256008600003848,140.897107165182,"CG","5:26315263:26317264","CGI_shore"]
[5,26666487,26666602,116,33,0.30412240216831,0.17134337336773,0.13277902880058,175.667179827148,"CHH","Os05g0536900","TES","small GTP-binding protein OsRab7A1","Similar to RAB7A && sp|Q43463|RAB7_SOYBN Ras-related protein Rab7 OS=Glycine max OX=3847 PE=2 SV=1 && PF00071:Ras family"]
[5,26949959,26950166,208,21,0.182842012967353,0.441592798958122,-0.258750785990769,-100.119253823258,"CG","5:26949729:26951730","CGI_shore"]
[5,26957823,26958160,338,118,0.311356879793261,0.155739894507051,0.155616985286209,568.197449713853,"CHH","5:26956425:26958425","CGI_shore"]
[5,27052344,27052539,196,57,0.0311722797939861,0.106411949530835,-0.0752396697368488,-295.334284325011,"CHH","5:27050421:27052422","CGI_shore"]
[5,27399899,27400008,110,19,0.526900092808541,0.162577894295471,0.36432219851307,188.59473660943,"CG","5:27399270:27400199","CGI"]
[5,27449517,27449604,88,17,0.0803019475000601,0.00289418845933575,0.0774077590407244,78.437256360962,"CHH","Os05g0552100","exon","Os05g0552100","Conserved hypothetical protein && - && -"]
[5,27799715,27799894,180,34,0.213011658879589,0.0859467598143355,0.127064899065254,186.963526505722,"CHH","5:27798606:27800606","CGI_shore"]
[5,27921140,27921519,380,93,0.209494651172141,0.0343275638019934,0.175167087370147,577.367119645207,"CHH","5:27918828:27921737","CGI"]
[5,28467590,28467670,81,15,0.485443570284445,0.212675469824792,0.272768100459653,81.600880950202,"CHH","5:28465778:28467778","CGI_shore"]
[5,28567236,28567382,147,20,0.231396931903539,0.0512098226967908,0.180187109206748,109.729203312563,"CHH","5:28565887:28567888","CGI_shore"]
[5,28662333,28662427,95,21,0.195667769408878,0.0127876618089144,0.182880107599963,118.218565181708,"CHH","5:28662119:28662379","CGI"]
[5,28738320,28738548,229,38,0.0482256357125689,0.323661183159245,-0.275435547446676,-299.678942606778,"CHH","Os05g0576900","promoter","PIN PROTEIN 10B","Similar to PIN1-like auxin transport protein && sp|Q6L5F6|PIN3B_ORYSJ Probable auxin efflux carrier component 3b OS=Oryza sativa subsp. japonica OX=39947 GN=PIN3B PE=2 SV=3 && PF03547:Membrane transport protein"]
[5,28747719,28747785,67,26,0.284096360169419,0.164174941307421,0.119921418861997,131.804297658183,"CHH","Os05g0577200","intron","IMCE","Carboxylesterase, type B family protein && sp|Q6L5F5|IMCE_ORYSJ Probable isoprenylcysteine alpha-carbonyl methylesterase ICME OS=Oryza sativa subsp. japonica OX=39947 GN=IMCE PE=2 SV=1 && PF07859:alpha/beta hydrolase fold"]
[5,29035587,29035660,74,20,0.212200610600939,0.41021597473788,-0.198015364136941,-112.003534351227,"CG","5:29033833:29035810","CGI"]
[5,29640763,29640879,117,21,0.0933124138305257,0.0105626140296847,0.0827497998008411,91.3755641869651,"CHH","5:29639407:29641408","CGI_shore"]
[5,29687992,29688079,88,28,0.23576878456718,0.109281066773155,0.126487717794025,181.342681588607,"CHH","5:29671370:29691111","CGI"]
[6,203468,203645,178,55,0.23350685546477,0.133730127272847,0.0997767281919223,277.275989875638,"CHH","Os06g0102800","intron","Os06g0102800","SNF2-related domain containing protein && sp|Q9M658|MOM1_ARATH Helicase protein MOM1 OS=Arabidopsis thaliana OX=3702 GN=MOM1 PE=1 SV=1 && PF00176:SNF2 family N-terminal domain"]
[6,610346,610432,87,14,0.422944260622401,0.692841458802626,-0.269897198180225,-62.092890226482,"CHG","6:608633:610634","CGI_shore"]
[6,766476,766577,102,14,0.281926747984421,0.105914632228572,0.176012115755849,85.3783368146158,"CHH","6:765835:767836","CGI_shore"]
[6,856133,856370,238,19,0.633960963166891,0.850018434693294,-0.216057471526403,-96.7536494577561,"CG","Os06g0115200","exon","Os06g0115200","Quinonprotein alcohol dehydrogenase-like domain containing protein && sp|Q9FRK5|Y1514_ARATH Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana OX=3702 GN=At1g75140 PE=1 SV=3 && -"]
[6,1069331,1069465,135,48,0.132060139708726,0.0508161967194896,0.0812439429892363,226.65438210042,"CHH","6:1067459:1069459","CGI_shore"]
[6,1402187,1402249,63,10,0.423726808190869,0.180278867808005,0.243447940382864,68.1660478335259,"CHG","6:1398195:1406736","CGI"]
[6,1730210,1730338,129,27,0.11938474806585,0.0194867205700746,0.0998980274957756,140.145120478662,"CHH","Os06g0132100","promoter","Os06g0132100","Transmembrane receptor, eukaryota domain containing protein && sp|F4JY11|CAND7_ARATH Protein CANDIDATE G-PROTEIN COUPLED RECEPTOR 7 OS=Arabidopsis thaliana OX=3702 GN=CAND7 PE=2 SV=1 && PF06814:Lung seven transmembrane receptor"]
[6,1735669,1735792,124,27,0.221124671730823,0.0915809242736565,0.129543747457167,129.240321029979,"CHH","6:1735326:1737326","CGI_shore"]
[6,2089017,2089170,154,68,0.183771458871585,0.0422305965281119,0.141540862343473,286.177785044333,"CG","Os06g0139800","exon","Os06g0139800","Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1 && sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum OX=4081 GN=APS1 PE=2 SV=1 && PF03767:HAD superfamily, subfamily IIIB (Acid phosphatase)"]
[6,2153958,2154154,197,23,0.17809712469425,0.0146239966369814,0.163473128057269,110.411370831628,"CHH","6:2153005:2155005","CGI_shore"]
[6,2292157,2292306,150,37,0.140090637664543,0.0569387861343101,0.0831518515302332,187.003217110547,"CHH","6:2291812:2293812","CGI_shore"]
[6,2396485,2396538,54,21,0.0176118003790086,0.110064470152479,-0.0924526697734706,-105.855511718945,"CHH","Os06g0145600","exon","Os06g0145600","Transferase family protein && sp|Q9LJB4|5MAT_ARATH Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase OS=Arabidopsis thaliana OX=3702 GN=5MAT PE=1 SV=1 && PF02458:Transferase family"]
[6,2568305,2568388,84,32,0.11639621126389,0.0166920892672968,0.0997041219965932,148.706276306579,"CHH","6:2566542:2568542","CGI_shore"]
[6,2763387,2763539,153,19,0.387932978199328,0.0410430093131214,0.346889968886207,97.2768994377405,"CHH","6:2762155:2764156","CGI_shore"]
[6,3018187,3018428,242,92,0.407684499340059,0.168390148209514,0.239294351130545,753.886910190756,"CHH","6:3018260:3020261","CGI_shore"]
[6,3022624,3022701,78,39,0.657022642557993,0.845416684997144,-0.188394042439151,-193.70415324492,"CG","6:3022497:3027465","CGI"]
[6,3300064,3300429,366,51,0.330424150681709,0.0503388824027387,0.28008526827897,286.598531099567,"CHH","6:3298784:3318301","CGI"]
[6,3300580,3300652,73,18,0.615121469303167,0.911041007078856,-0.29591953777569,-94.1073286175515,"CG","Os06g0165300","intron","Os06g0165300","Transposase (putative), gypsy type domain containing protein && - && -"]
[6,3335607,3335662,56,15,0.304411274989906,0.17266762204878,0.131743652941126,69.6462593175392,"CHH","Os06g0166400","promoter","ETHYLENE RESPONSE FACTOR 7","Similar to TINY-like protein (AP2 domain containing protein RAP2.10) (Fragment) && sp|O22174|ERF08_ARATH Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 GN=ERF008 PE=2 SV=1 && PF00847:AP2 domain"]
[6,3353062,3353125,64,21,0.0888640974340664,0.0384766601066562,0.0503874373274102,108.399990121854,"CHH","ENSRNA049445580","promoter","tRNA-Ala","tRNA-Ala for anticodon AGC && - && -"]
[6,3939751,3939879,129,64,0.15087730263283,0.0800551081012221,0.070822194531608,266.647642894931,"CHH","6:3939746:3941747","CGI_shore"]
[6,4246887,4246996,110,26,0.114716345211258,0.0167679153872316,0.097948429824026,154.526151764066,"CHH","Os06g0184600","promoter","Os06g0184600","Conserved hypothetical protein && - && -"]
[6,4404623,4404695,73,25,0.353501198258182,0.229814231120809,0.123686967137373,119.114535049628,"CHH","Os06g0187200","exon","UDP-glucuronic acid 4-epimerase 5","Similar to Nucleotide sugar epimerase-like protein (UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6) && sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana OX=3702 GN=GAE1 PE=1 SV=1 && PF16363:GDP-mannose 4,6 dehydratase"]
[6,4416971,4417184,214,54,0.137199776068895,0.0356878032635219,0.101511972805374,286.269502640714,"CHH","6:4415413:4417413","CGI_shore"]
[6,4933030,4933155,126,37,0.278415987487558,0.163176843192968,0.115239144294591,196.607750444193,"CHH","Os06g0196900","promoter","Os06g0196900","Similar to Chaperonin && sp|O65282|CH20_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2 && PF00166:Chaperonin 10 Kd subunit"]
[6,4983708,4983891,184,24,0.306657900571742,0.0147664138983003,0.291891486673442,133.021674389117,"CHH","6:4982108:4984108","CGI_shore"]
[6,5236206,5236393,188,55,0.153769718381724,0.0389057974159015,0.114863920965823,249.340606954335,"CHH","6:5236195:5236462","CGI"]
[6,5240241,5240347,107,30,0.118210501414568,0.0238707696176544,0.0943397317969138,145.720539456745,"CHH","Os06g0203702","utr5","Os06g0203702","Hypothetical protein && - && -"]
[6,5538434,5538683,250,66,0.337739019829999,0.194085514782343,0.143653505047656,313.384440337544,"CHH","6:5533749:5540901","CGI"]
[6,5655808,5655910,103,33,0.193064429977677,0.103562342759184,0.089502087218493,165.837734047082,"CHH","6:5654851:5656851","CGI_shore"]
[6,5847842,5848012,171,47,0.445841826517963,0.290373546528523,0.155468279989441,239.958800699181,"CHH","6:5845856:5847857","CGI_shore"]
[6,5847842,5848012,171,47,0.445841826517963,0.290373546528523,0.155468279989441,239.958800699181,"CHH","Os06g0215000","TES","Os06g0215000","Hypothetical protein && - && PF07816:Protein of unknown function (DUF1645)"]
[6,6231685,6232024,340,149,0.119240525293254,0.0543193239169456,0.0649212013763079,732.851423358405,"CHH","6:6230750:6232750","CGI_shore"]
[6,6232282,6232591,310,112,0.179071233089668,0.0571204516354546,0.121950781454213,763.607274422056,"CHH","Os06g0220900","promoter","Os06g0220900","Conserved hypothetical protein && - && -"]
[6,6437762,6437946,185,50,0.12333434437361,0.0334443778063307,0.0898899665672791,311.688705341698,"CHH","6:6436850:6438851","CGI_shore"]
[6,6455462,6455683,222,26,0.505357772858436,0.803832867569074,-0.298475094710638,-138.172046381561,"CG","6:6454501:6456502","CGI_shore"]
[6,6528747,6528854,108,29,0.521754725179643,0.795880748493593,-0.27412602331395,-128.268457214755,"CG","6:6528010:6530011","CGI_shore"]
[6,6602705,6602987,283,72,0.294620910753358,0.0828767368795739,0.211744173873784,459.508068751289,"CHH","Os06g0227200","promoter","Os06g0227200","Kelch related domain containing protein && - && PF10539:Development and cell death domain"]
[6,6693898,6693971,74,16,0.250619069244378,0.0404065984798997,0.210212470764478,76.1883915791439,"CHH","Os06g0228800","intron","amino acid permease 10A, amino acid permease 17, amino acid/auxin permease 17","Amino acid transporter, transmembrane domain containing protein && sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana OX=3702 GN=AAP2 PE=1 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[6,6717787,6717849,63,5,0.263458912252427,0.490548010742607,-0.22708909849018,-21.9898223029138,"CG","Os06g0229200","utr5","Os06g0229200","Glycosyl transferase, family 31 protein && sp|Q8L7F9|B3GTF_ARATH Beta-1,3-galactosyltransferase GALT1 OS=Arabidopsis thaliana OX=3702 GN=GALT1 PE=1 SV=1 && PF01762:Galactosyltransferase|PF00337:Galactoside-binding lectin"]
[6,6821743,6821818,76,19,0.484120995465909,0.268072636774449,0.21604835869146,102.347687803099,"CHH","6:6819814:6821815","CGI_shore"]
[6,6885113,6885281,169,59,0.0349673920877826,0.231204161389202,-0.19623676930142,-380.506228171187,"CHH","6:6884129:6886129","CGI_shore"]
[6,7016705,7016819,115,44,0.16978649140599,0.0794090223589388,0.0903774690470511,211.64062025271,"CHH","Os06g0234633","intron","Os06g0234633","Similar to Inositol phosphate kinase && sp|A0JJZ6|ITPK5_ORYSI Inositol-tetrakisphosphate 1-kinase 5 OS=Oryza sativa subsp. indica OX=39946 GN=ITPK5 PE=3 SV=1 && -"]
[6,7099067,7099260,194,65,0.196121210749545,0.0766895096605771,0.119431701088968,355.242132342275,"CHH","6:7097738:7099739","CGI_shore"]
[6,7173280,7173360,81,32,0.300941416569506,0.1913574243119,0.109583992257606,136.916022822757,"CHH","Os06g0237900","promoter","Os06g0237900","Conserved hypothetical protein && sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana OX=3702 GN=At3g47830 PE=3 SV=1 && -"]
[6,7350721,7350800,80,41,0.0690519798084046,0.0245929234351813,0.0444590563732233,193.671821449624,"CHH","6:7349936:7351936","CGI_shore"]
[6,7500906,7501068,163,49,0.141324879563316,0.0543308772434247,0.0869940023198909,211.569246014349,"CHH","6:7500672:7502673","CGI_shore"]
[6,7541430,7541521,92,17,0.145283870028071,0.0473786270750018,0.0979052429530693,77.80213614977,"CHG","6:7540849:7542552","CGI"]
[6,7932777,7933025,249,72,0.248673106044218,0.127674542398032,0.120998563646186,369.134764697234,"CHH","Os06g0252800","promoter","Os06g0252800","Similar to STF-1 (Fragment) && sp|Q9FG94|SOT1_ARATH Cytosolic sulfotransferase 1 OS=Arabidopsis thaliana OX=3702 GN=SOT1 PE=2 SV=1 && PF00685:Sulfotransferase domain"]
[6,7987538,7987814,277,91,0.213339236416534,0.0472198879593731,0.166119348457161,597.287647320572,"CHH","Os06g0254300","intron","Os06g0254300","Similar to EF-hand calcium bining protein && sp|Q9CAB7|PXG4_ARATH Probable peroxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=PXG4 PE=1 SV=1 && -"]
[6,8106062,8106138,77,28,0.216454258076656,0.118244096127509,0.0982101619491463,118.806337479442,"CHH","6:8105947:8107948","CGI_shore"]
[6,8107108,8107461,354,100,0.142209635631849,0.0461669786549777,0.0960426569768709,569.548473765306,"CHH","6:8105947:8107948","CGI_shore"]
[6,8186631,8186812,182,41,0.0620089325380081,0.181146308162109,-0.119137375624101,-244.861119526067,"CHH","6:8186452:8187045","CGI"]
[6,8432300,8432536,237,68,0.276924444874002,0.110579323694473,0.166345121179529,410.626658628304,"CHH","6:8431952:8433952","CGI_shore"]
[6,8746335,8746389,55,15,0.366066769172853,0.217494569942836,0.148572199230017,69.680098174922,"CHH","Os06g0264700","promoter","Os06g0264700","Acylphosphatase domain containing protein && sp|A5G1Y9|ACYP_ACICJ Acylphosphatase OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=acyP PE=3 SV=1 && PF00708:Acylphosphatase"]
[6,8841036,8841149,114,13,0.817450898390925,0.637906195396931,0.179544702993995,46.135910505021,"CG","6:8840959:8842960","CGI_shore"]
[6,8877871,8878002,132,40,0.589782948741083,0.44721121762308,0.142571731118003,192.76430111134,"CHH","6:8877890:8879890","CGI_shore"]
[6,8878931,8879134,204,66,0.231696130935115,0.122126675403675,0.10956945553144,355.126001007733,"CHH","6:8877890:8879890","CGI_shore"]
[6,9056172,9056249,78,19,0.198674916263093,0.0656873944803138,0.13298752178278,94.5824443796091,"CHH","6:9054843:9056843","CGI_shore"]
[6,9132019,9132211,193,19,0.299887764661994,0.0840381932066797,0.215849571455314,99.2017910100694,"CHG","Os06g0271500","intron","Os06g0271500","Transposon, En/Spm-like domain containing protein && - && PF02992:Transposase family tnp2|PF13960:Domain of unknown function (DUF4218)"]
[6,9146080,9146238,159,12,0.526196523945797,0.173134317002441,0.353062206943356,58.9404512745252,"CG","6:9145952:9146194","CGI"]
[6,9174306,9174398,93,35,0.155864015884171,0.0810321265840497,0.0748318893001213,170.383364939577,"CHH","6:9173315:9175315","CGI_shore"]
[6,9362893,9362960,68,26,0.110174692983497,0.0507863267657864,0.0593883662177106,117.351502039781,"CHH","Os06g0275600","promoter","basic helix-loop-helix protein 086, Transcriptional Activator protein 1","Similar to TA1 protein (Fragment) && sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana OX=3702 GN=BHLH49 PE=1 SV=1 && -"]
[6,9388996,9389056,61,14,0.393948008710905,0.573910847834588,-0.179962839123682,-63.4013323563922,"CHG","6:9387226:9391660","CGI"]
[6,9400042,9400393,352,134,0.198958044628393,0.103255386528936,0.0957026580994574,587.595575308349,"CHH","6:9399670:9401560","CGI"]
[6,9449091,9449165,75,32,0.150752654941938,0.050123411223705,0.100629243718233,157.217678274881,"CHH","6:9448807:9449200","CGI"]
[6,9858293,9858395,103,50,0.214490363897489,0.0849282178366536,0.129562146060835,299.388711902429,"CHH","Os06g0281400","promoter","Os06g0281400","Similar to DNA topoisomerase && sp|Q1RIM1|TOP1_RICBR DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=topA PE=3 SV=1 && -"]
[6,9917248,9917470,223,49,0.121855010320165,0.0298264306272188,0.0920285796929459,287.577627088249,"CHH","6:9917000:9919001","CGI_shore"]
[6,9989527,9989649,123,38,0.221647857650826,0.0984515711365783,0.123196286514248,174.809228380605,"CHH","6:9989459:9991460","CGI_shore"]
[6,10146154,10146239,86,16,0.234805364177015,0.100263343516248,0.134542020660767,70.0030502837969,"CHH","6:10144622:10146622","CGI_shore"]
[6,10444326,10444451,126,23,0.374330401327648,0.193570601281044,0.180759800046604,113.436273082997,"CHH","Os06g0287700","promoter","Os06g0287700","Similar to NBS-LRR disease resistance protein homologue (Fragment) && sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPP13L3 PE=3 SV=1 && -"]
[6,10555870,10555956,87,23,0.212016667141848,0.0772350679446259,0.134781599197222,102.376322362543,"CHH","6:10554881:10556882","CGI_shore"]
[6,10707391,10707443,53,20,0.170014601092131,0.0914845430439823,0.0785300580481491,92.6110386996925,"CHH","6:10706354:10708355","CGI_shore"]
[6,10734430,10734495,66,11,0.62697690686728,0.359790936451171,0.26718597041611,59.0700652972127,"CHG","6:10733145:10735145","CGI_shore"]
[6,10862833,10862898,66,16,0.121648533372617,0.0443667058534014,0.0772818275192156,83.9483344673175,"CHH","6:10861852:10863852","CGI_shore"]
[6,11050972,11051069,98,23,0.153036595447244,0.076352532084138,0.0766840633631056,114.805326330592,"CHH","Os06g0297800","intron","Os06g0297800","Similar to protein binding / zinc ion binding && sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana OX=3702 GN=At1g03370 PE=2 SV=4 && -"]
[6,11129165,11129345,181,64,0.242296432380983,0.0738299321901837,0.1684665001908,385.950919051136,"CHH","6:11121767:11134761","CGI"]
[6,11176752,11176820,69,30,0.152998670524606,0.0138351509021902,0.139163519622415,140.28499142953,"CHH","6:11176644:11177157","CGI"]
[6,11496888,11497089,202,58,0.101589244138544,0.0327821548052526,0.0688070893332916,300.045355363282,"CHH","6:11496941:11498941","CGI_shore"]
[6,11561155,11561319,165,47,0.302641393359733,0.17379601628176,0.128845377077973,239.816918371592,"CHH","6:11532421:11587478","CGI"]
[6,11653630,11653697,68,21,0.102489198698493,0.0390634762665659,0.0634257224319274,90.4218186249057,"CHH","6:11653663:11657773","CGI"]
[6,11724170,11724267,98,40,0.292653266617862,0.181579069127939,0.111074197489923,183.267042578294,"CHH","Os06g0308900","promoter","Os06g0308900","Similar to DHHC zinc finger domain containing protein && sp|Q9LIH7|ZDHC7_ARATH Protein S-acyltransferase 11 OS=Arabidopsis thaliana OX=3702 GN=PAT11 PE=2 SV=1 && -"]
[6,11865653,11865818,166,38,0.30009695297495,0.163196821526439,0.136900131448511,201.258016794767,"CHH","6:11864889:11866889","CGI_shore"]
[6,11938532,11938605,74,24,0.0565081669243674,0.0052919812489896,0.0512161856753778,118.798813599351,"CHH","6:11937188:11939189","CGI_shore"]
[6,11964943,11965012,70,23,0.228645022202053,0.131361267399903,0.0972837548021506,113.884766983985,"CHH","6:11964977:11971064","CGI"]
[6,12124945,12125128,184,58,0.0820913031262916,0.019672925961464,0.0624183771648275,284.059753040124,"CHH","6:12123519:12125519","CGI_shore"]
[6,12262273,12262368,96,38,0.214176932729926,0.0949499180048237,0.119227014725102,190.439124975716,"CHH","Os06g0316950","promoter","Os06g0316950","Conserved hypothetical protein && - && -"]
[6,12593604,12593734,131,39,0.151544138000707,0.0186704622454192,0.132873675755288,234.452559327121,"CHH","6:12591766:12593767","CGI_shore"]
[6,12943599,12943671,73,20,0.0674096987394095,0.0123395428200707,0.0550701559193388,84.2485180342031,"CHH","Os06g0328650","utr5","Os06g0328650","Similar to H0811D08.9 protein && - && -"]
[6,12999867,12999936,70,7,0.530427244535062,0.114286381689632,0.41614086284543,42.3821277741254,"CHG","Os06g0329200","intron","Os06g0329200","Conserved hypothetical protein && - && -"]
[6,13029324,13029469,146,43,0.162731057005622,0.0817286456672662,0.0810024113383554,205.842943582195,"CHH","6:13027823:13029823","CGI_shore"]
[6,13058556,13058753,198,60,0.28190644408225,0.139741907354256,0.142164536727994,361.776079068402,"CHH","6:13057848:13059849","CGI_shore"]
[6,13142129,13142184,56,18,0.121789540276345,0.0116209197930839,0.110168620483261,91.8114579805744,"CHH","6:13141701:13143701","CGI_shore"]
[6,13430506,13430586,81,27,0.0676489936260956,0.0262134024329738,0.0414355911931218,123.434951006495,"CHH","6:13429673:13431673","CGI_shore"]
[6,13598789,13598857,69,20,0.107554639972633,0.0337290923167443,0.0738255476558884,103.837149877104,"CHH","6:13597825:13599826","CGI_shore"]
[6,13836144,13836383,240,47,0.431866033004793,0.231109159908808,0.200756873095984,304.993837193182,"CHH","6:13835941:13837942","CGI_shore"]
[6,14033747,14033858,112,25,0.247667780686094,0.0180266237385504,0.229641156947543,149.49974849152,"CHH","6:14033784:14037701","CGI"]
[6,14196829,14196940,112,26,0.822647723113987,0.618352032507274,0.204295690606713,110.896814661345,"CG","6:14195531:14197532","CGI_shore"]
[6,14269224,14269385,162,41,0.280895589929031,0.0661416362701372,0.214753953658894,235.715508735206,"CHH","6:14269113:14271114","CGI_shore"]
[6,14416873,14417116,244,30,0.25723999001354,0.0242430840304414,0.232996905983099,198.616869096353,"CHH","6:14415725:14417726","CGI_shore"]
[6,14521773,14521849,77,33,0.146882704217168,0.0705037484048628,0.0763789558123057,153.41050929874,"CHH","6:14520789:14522789","CGI_shore"]
[6,14822816,14823044,229,88,0.265253358757973,0.15351269169803,0.111740667059944,446.750812142349,"CHH","6:14822769:14824770","CGI_shore"]
[6,15202832,15202891,60,13,0.516053655237069,0.790299740789882,-0.274246085552813,-74.5818396733837,"CHG","6:15201450:15203450","CGI_shore"]
[6,15335071,15335161,91,27,0.128129481348181,0.0404176925555805,0.0877117887926005,123.615318751086,"CHH","Os06g0367100","promoter","Os06g0367100","Glycoside hydrolase, subgroup, catalytic core domain containing protein && sp|D2WL32|GLGB3_ARATH 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SBE3 PE=1 SV=1 && PF02806:Alpha amylase, C-terminal all-beta domain|PF00128:Alpha amylase, catalytic domain|PF02922:Carbohydrate-binding module 48 (Isoamylase N-terminal domain)"]
[6,15606034,15606140,107,41,0.157351659745093,0.0223857777860268,0.134965881959066,198.851564956489,"CHH","6:15601526:15607492","CGI"]
[6,15722225,15722442,218,69,0.154294905538849,0.0639047199074443,0.0903901856314046,303.523131515836,"CHH","Os06g0472000","promoter","Methionine sulfoxide reductase B1, Methionine sulfoxide reductase B1.1, peptide methionine sulfoxide reductase","Methionine sulphoxide reductase B domain containing protein && sp|Q0DC89|MSRB1_ORYSJ Peptide methionine sulfoxide reductase B1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MSRB1 PE=2 SV=2 && PF01641:SelR domain"]
[6,15800998,15801091,94,22,0.811645949256401,0.552659798667412,0.258986150588989,101.19543948765,"CG","6:15800976:15801188","CGI"]
[6,16015425,16015537,113,17,0.29009900280053,0.136073519374284,0.154025483426246,79.3330193058083,"CHH","Os06g0476200","intron","Os06g0476200","Similar to Phosphoglucomutase precursor (EC 5.4.2.2) && sp|Q88C93|ALGC_PSEPK Phosphomannomutase/phosphoglucomutase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) OX=160488 GN=algC PE=3 SV=1 && PF02878:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I|PF02880:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III|PF02879:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II"]
[6,16182297,16182388,92,16,0.535274342623637,0.287509291141553,0.247765051482084,69.2069303627208,"CHG","6:16182110:16184111","CGI_shore"]
[6,16362671,16362725,55,17,0.128829768858369,0.0368521765743325,0.0919775922840366,83.1503891133378,"CHH","6:16361036:16363037","CGI_shore"]
[6,16618105,16618183,79,14,0.189777518448657,0.0891532613716822,0.100624257076974,97.7472446804297,"CHH","Os06g0486400","promoter","Os06g0486400","Serine/threonine protein kinase domain containing protein && sp|Q551H4|FRAY2_DICDI Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum OX=44689 GN=fray2 PE=3 SV=1 && -"]
[6,16706089,16706149,61,15,0.858198942348834,0.783302972107301,0.0748959702415329,59.703614073629,"CG","6:16705167:16706218","CGI"]
[6,17010809,17010937,129,12,0.336612470646828,0.658787525498669,-0.322175054851842,-62.8402113068182,"CHG","6:17010915:17011216","CGI"]
[6,17391695,17391902,208,29,0.47604314123759,0.808329524509781,-0.332286383272192,-176.416956001152,"CG","6:17391715:17392019","CGI"]
[6,17432908,17433108,201,53,0.28781970013948,0.058983727891949,0.228835972247531,297.303394059718,"CHH","6:17432120:17434120","CGI_shore"]
[6,17620058,17620109,52,24,0.152475625494582,0.0790515874453298,0.073424038049252,99.2316939520649,"CHH","6:17619678:17621273","CGI"]
[6,17678729,17678840,112,41,0.27604249714291,0.0318189699223668,0.244223527220543,313.6462080025,"CHH","6:17678303:17678996","CGI"]
[6,17805673,17805783,111,33,0.160437742827103,0.0447505821845147,0.115687160642589,177.434104493666,"CHH","6:17804200:17805779","CGI"]
[6,17988463,17988590,128,43,0.160775888084762,0.0873376457344313,0.0734382423503306,184.945691409884,"CHH","6:17988538:17990539","CGI_shore"]
[6,18154952,18155353,402,135,0.257598402329422,0.091770347158191,0.165828055171231,903.992298170918,"CHH","6:18154020:18156020","CGI_shore"]
[6,18553276,18553556,281,85,0.290926024472231,0.627852095688296,-0.336926071216065,-682.534628897419,"CG","6:18553103:18553660","CGI"]
[6,18825604,18825676,73,8,0.217745094880897,0.67721770382581,-0.459472608944914,-47.1330086665833,"CHG","6:18824675:18826675","CGI_shore"]
[6,18949213,18949281,69,21,0.207789132920068,0.0858885213122132,0.121900611607855,125.233395265204,"CHH","6:18947283:18949284","CGI_shore"]
[6,18982184,18982275,92,20,0.223152122697202,0.101506610809033,0.121645511888169,103.596449223079,"CHH","Os06g0518300","promoter","Os06g0518300","Hypothetical conserved gene && - && -"]
[6,18984099,18984194,96,21,0.146550073148645,0.56249786628838,-0.415947793139735,-161.782075817123,"CG","6:18975488:18984564","CGI"]
[6,19193865,19194029,165,48,0.58288732132724,0.281638085126085,0.301249236201155,274.78745209434,"CHH","Os06g0521200","promoter","class III peroxidase 85","Similar to peroxidase 52 && sp|A7NY33|PER4_VITVI Peroxidase 4 OS=Vitis vinifera OX=29760 GN=GSVIVT00023967001 PE=1 SV=1 && PF00141:Peroxidase"]
[6,19400004,19400086,83,37,0.246250087059593,0.110427372947139,0.135822714112454,165.895380126587,"CHH","Os06g0524300","promoter","Os06g0524300","Protein of unknown function DUF3133 domain containing protein && - && PF11331:Probable zinc-ribbon domain"]
[6,19431877,19432141,265,90,0.115889408243073,0.0329437387901933,0.0829456694528801,495.679049145016,"CHH","6:19431671:19433672","CGI_shore"]
[6,19534286,19534499,214,64,0.172591393475078,0.0581565290413458,0.114434864433733,326.224931145709,"CHH","6:19533496:19535496","CGI_shore"]
[6,19569501,19569648,148,43,0.16360073077234,0.057924661365576,0.105676069406764,250.103495360536,"CHH","Os06g0527500","utr3","Os06g0527500","Conserved hypothetical protein && sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1 && -"]
[6,19706064,19706117,54,20,0.194311031757146,0.0123439372612402,0.181967094495905,123.312176371058,"CHH","6:19704236:19706236","CGI_shore"]
[6,19912783,19913128,346,113,0.170380455486025,0.082121114376798,0.0882593411092266,524.954692167963,"CHH","6:19910834:19912834","CGI_shore"]
[6,19915775,19915847,73,21,0.178557027129008,0.0731565999509436,0.105400427178064,108.055664797364,"CHH","6:19915042:19917042","CGI_shore"]
[6,20024931,20025002,72,7,0.322572494353466,0.67304655510095,-0.350474060747484,-35.6821675268743,"CHG","Os06g0535100","promoter","RNA helicase 51","Similar to predicted protein && sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 PE=3 SV=2 && PF00270:DEAD/DEAH box helicase|PF13959:Domain of unknown function (DUF4217)|PF00271:Helicase conserved C-terminal domain"]
[6,20157662,20157849,188,35,0.242077990463865,0.107870882319852,0.134207108144013,166.565145639673,"CHH","Os06g0538000","promoter","Os06g0538000","Similar to T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma) (Matricin) (mTRiC-P5) && sp|Q84WV1|TCPG_ARATH T-complex protein 1 subunit gamma OS=Arabidopsis thaliana OX=3702 GN=CCT3 PE=1 SV=1 && PF00118:TCP-1/cpn60 chaperonin family"]
[6,20244376,20244433,58,20,0.0100562093319514,0.063692799431164,-0.0536365900992126,-88.5022734610851,"CHH","Os06g0539250","utr3","Os06g0539250","Similar to SWIM zinc finger family protein && - && -"]
[6,20318686,20318797,112,33,0.565931501495735,0.786763543801644,-0.220832042305909,-143.112963346046,"CG","6:20313008:20318996","CGI"]
[6,20634817,20634981,165,38,0.157959993874629,0.0640553485481911,0.0939046453264377,173.064693266138,"CHH","Os06g0546000","promoter","Os06g0546000","Hypothetical protein && sp|F4HZX7|OFUT8_ARATH O-fucosyltransferase 8 OS=Arabidopsis thaliana OX=3702 GN=OFUT8 PE=2 SV=1 && -"]
[6,20761353,20761580,228,73,0.615062807155505,0.371764322214795,0.24329848494071,538.215334747735,"CG","Os06g0548500","exon","Os06g0548500","Conserved hypothetical protein && - && -"]
[6,20791657,20791725,69,20,0.0266446237360979,0.142968595472213,-0.116323971736116,-87.0672958797662,"CHH","6:20790943:20792944","CGI_shore"]
[6,20921794,20921968,175,59,0.619923311251704,0.858928888689991,-0.239005577438287,-323.154698769455,"CG","6:20920739:20922060","CGI"]
[6,21163939,21164110,172,51,0.119996946991896,0.0406451346429577,0.0793518123489387,273.392541886849,"CHH","Os06g0555400","intron","Os06g0555400","Similar to 40S ribosomal protein S19-like && sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1 && PF01282:Ribosomal protein S24e"]
[6,21179913,21180107,195,63,0.241563210053706,0.10743685765559,0.134126352398116,359.621290869158,"CHH","6:21179830:21181831","CGI_shore"]
[6,21547321,21547502,182,51,0.23202996674306,0.111848294452456,0.120181672290604,247.271675232898,"CHH","6:21547110:21551773","CGI"]
[6,21633408,21633474,67,22,0.0998745057882301,0.0105467428221155,0.0893277629661146,104.704914190664,"CHH","6:21633460:21635461","CGI_shore"]
[6,21759546,21759729,184,51,0.294156263948934,0.167967688854076,0.126188575094858,294.609001913383,"CHH","Os06g0565100","promoter","OsMAX1b","Cytochrome P450 family member,  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1 && sp|B9DFU2|MAX1_ARATH Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,21760321,21760521,201,65,0.0923441148286365,0.22317140609223,-0.130827291263593,-379.168585149211,"CHH","Os06g0565100","promoter","OsMAX1b","Cytochrome P450 family member,  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1 && sp|B9DFU2|MAX1_ARATH Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,21797244,21797328,85,17,0.410631378189504,0.171396979571924,0.239234398617579,103.158367870834,"CHH","6:21797183:21799184","CGI_shore"]
[6,21860030,21860260,231,54,0.334445073078332,0.209875358719297,0.124569714359035,245.5979479171,"CHH","6:21859201:21861202","CGI_shore"]
[6,21951634,21951759,126,18,0.0374817805488003,0.221004689617521,-0.183522909068721,-102.589914950919,"CHH","Os06g0567900","intron","ASCORBATE OXIDASE 2","L-ascorbate oxidase, Cold, salt, drought stress respons && sp|P37064|ASO_CUCPM L-ascorbate oxidase OS=Cucurbita pepo var. melopepo OX=3665 PE=1 SV=1 && PF07732:Multicopper oxidase|PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[6,21951957,21952048,92,17,0.397939052771983,0.195890973600224,0.202048079171759,88.2280133264533,"CHH","6:21951559:21953560","CGI_shore"]
[6,22043970,22044184,215,45,0.207613734462215,0.0217040666515702,0.185909667810645,278.493299143212,"CHH","6:22042538:22045505","CGI"]
[6,22048932,22049031,100,24,0.687866821286695,0.885748230304511,-0.197881409017816,-110.22254266361,"CG","6:22048840:22050840","CGI_shore"]
[6,22090371,22090428,58,7,0.296764996983824,0.0862468506947004,0.210518146289124,34.432916655082,"CHG","Os06g0570566","intron","Os06g0570566","Similar to Ent-kaurene oxidase && sp|Q5Z5R4|C7016_ORYSJ Ent-kaurene oxidase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYP701A6 PE=1 SV=1 && PF00067:Cytochrome P450"]
[6,22197320,22197457,138,19,0.00681804797151249,0.193870953044048,-0.187052905072536,-117.171786034547,"CHH","Os06g0572400","utr3","TETRASPANIN 9","Tetraspanin domain containing protein && sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1 && PF00335:Tetraspanin family"]
[6,22565520,22565913,394,122,0.225034594639509,0.11384540542599,0.111189189213519,622.588729685524,"CHH","6:22564746:22566746","CGI_shore"]
[6,22663061,22663116,56,17,0.230655024746427,0.0719039426871471,0.15875108205928,71.1602286152608,"CG","Os06g0581151","exon","Os06g0581151","Hypothetical protein && sp|Q8H157|PTR19_ARATH Protein NRT1/ PTR FAMILY 4.6 OS=Arabidopsis thaliana OX=3702 GN=NPF4.6 PE=1 SV=1 && PF00854:POT family"]
[6,22783201,22783415,215,86,0.13932922324535,0.0531177810136433,0.0862114422317066,470.285937050543,"CHH","6:22782617:22784618","CGI_shore"]
[6,22792175,22792251,77,30,0.286283390090573,0.15158906986564,0.134694320224933,143.549080453724,"CHH","6:22789380:22792185","CGI"]
[6,23000976,23001156,181,23,0.423969897888567,0.25996457401543,0.164005323873136,99.3769412199038,"CHH","Os06g0587100","intron","Os06g0587100","Conserved hypothetical protein && - && -"]
[6,23088224,23088400,177,46,0.403885205267359,0.0827118017766528,0.321173403490706,270.26960749055,"CG","Os06g0588450","intron","Os06g0588450","Hypothetical conserved gene && - && -"]
[6,23134760,23134856,97,8,0.575214421014,0.840697760636751,-0.265483339622751,-41.2360907945618,"CG","Os06g0589600","utr5","Os06g0589600","Protein kinase, core domain containing protein && sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana OX=3702 GN=At1g14390 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[6,23289334,23289439,106,29,0.114719037286152,0.0160674380713964,0.0986515992147557,120.961873741565,"CHH","6:23253707:23334982","CGI"]
[6,23371269,23371509,241,68,0.242354947389411,0.0888272478270137,0.153527699562397,413.949849742931,"CHH","6:23369875:23371876","CGI_shore"]
[6,23438423,23438517,95,14,0.265575195507757,0.0405528024563253,0.225022393051432,82.5223048484934,"CHH","6:23436786:23438786","CGI_shore"]
[6,23934830,23934961,132,27,0.456027780011456,0.197241010722458,0.258786769288998,128.535731884613,"CHH","6:23934028:23936028","CGI_shore"]
[6,24073841,24073933,93,23,0.0164377894863764,0.115647866143914,-0.099210076657538,-108.38783348935,"CHH","6:24072442:24074443","CGI_shore"]
[6,24282851,24282901,51,19,0.508437531792715,0.375753197272301,0.132684334520414,80.6431115967069,"CHH","6:24281990:24283990","CGI_shore"]
[6,24293587,24293671,85,14,0.429156536751416,0.232321796329742,0.196834740421673,58.7212508444707,"CG","Os06g0609850","promoter","Os06g0609850","Hypothetical protein && - && -"]
[6,24513219,24513371,153,45,0.270452527076169,0.0789545626435411,0.191497964432628,254.984525457689,"CHH","6:24512306:24514593","CGI"]
[6,24571164,24571293,130,29,0.405655074967194,0.246942752283188,0.158712322684006,147.492742752409,"CG","6:24571210:24575081","CGI"]
[6,24875214,24875281,68,27,0.152277789031375,0.0652484838260216,0.0870293052053536,120.206400625579,"CHH","6:24873385:24875385","CGI_shore"]
[6,24875214,24875281,68,27,0.152277789031375,0.0652484838260216,0.0870293052053536,120.206400625579,"CHH","Os06g0619066","exon","Os06g0619066","Hypothetical protein && sp|Q25AG2|LERK4_ORYSI G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK4 PE=3 SV=1 && -"]
[6,25282589,25282684,96,38,0.0684868652484683,0.0224335562205244,0.0460533090279438,160.408207090303,"CHH","6:25281734:25283734","CGI_shore"]
[6,25289964,25290206,243,25,0.0298851655701023,0.177410260707189,-0.147525095137087,-100.630594824802,"CHG","Os06g0626466","utr3","Os06g0626466","Hypothetical conserved gene && - && -"]
[6,25769875,25769940,66,18,0.103287119203879,0.0164961203215406,0.0867909988823383,87.2738227060896,"CHH","6:25769530:25769977","CGI"]
[6,25866687,25866885,199,73,0.216496638242912,0.115160710174555,0.101335928068357,356.510050705527,"CHH","Os06g0636600","promoter","HT1","Protein kinase, core domain containing protein && sp|Q2MHE4|HT1_ARATH Serine/threonine/tyrosine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1 && -"]
[6,25990279,25990373,95,10,0.504047839587617,0.254537446777474,0.249510392810143,68.7602850889965,"CHH","6:25988843:25990779","CGI"]
[6,26108964,26109072,109,42,0.109890501932256,0.0505453388359979,0.059345163096258,188.079200423246,"CHH","6:26045862:26124081","CGI"]
[6,26261643,26261835,193,43,0.219683066438462,0.0695506959402049,0.150132370498257,222.640998267142,"CHH","6:26261082:26263082","CGI_shore"]
[6,26286141,26286246,106,33,0.0139516906393281,0.162589971785109,-0.148638281145781,-149.876492126842,"CHH","6:26286218:26287116","CGI"]
[6,26850716,26851096,381,87,0.121504686027979,0.0289879217759513,0.0925167642520281,465.939222751596,"CHH","6:26850558:26852559","CGI_shore"]
[6,26883990,26884105,116,22,0.0123837377839392,0.145614634464203,-0.133230896680263,-113.582920761016,"CHH","6:26882151:26884151","CGI_shore"]
[6,27067818,27068046,229,42,0.376100567256066,0.207585880074528,0.168514687181538,219.885755625185,"CHH","6:27067439:27069440","CGI_shore"]
[6,27094095,27094304,210,62,0.185825826667784,0.0603599563181909,0.125465870349593,309.696280627077,"CHH","6:27094079:27096079","CGI_shore"]
[6,27270049,27270171,123,23,0.15865721442446,0.561725530549071,-0.403068316124612,-202.713590735876,"CG","6:27270146:27272147","CGI_shore"]
[6,27419075,27419154,80,14,0.187347442429784,0.0123072349743441,0.17504020745544,74.8960415322592,"CHH","Os06g0664000","promoter","Os06g0664000","Hypothetical gene && - && -"]
[6,27880388,27880510,123,26,0.371601733571883,0.131802371869754,0.239799361702129,149.087786468375,"CHH","6:27879796:27881796","CGI_shore"]
[6,27967734,27967911,178,51,0.0774126286787718,0.0100781298348413,0.0673344988439305,242.363478355158,"CHH","Os06g0673700","intron","Os06g0673700","Hypothetical protein && - && -"]
[6,28228996,28229081,86,30,0.210498885629233,0.1060035675313,0.104495318097933,158.62414464622,"CHH","Os06g0678700","promoter","Os06g0678700","Conserved hypothetical protein && - && -"]
[6,28417941,28418084,144,68,0.0500178912196253,0.210916048505427,-0.160898157285802,-365.748311646578,"CHH","Os06g0681600","intron","class III peroxidase 89","Haem peroxidase family protein && sp|O23044|PER3_ARATH Peroxidase 3 OS=Arabidopsis thaliana OX=3702 GN=PER3 PE=2 SV=1 && PF00141:Peroxidase"]
[6,28758208,28758402,195,38,0.268773404336032,0.128050927438029,0.140722476898003,191.541335995281,"CHH","Os06g0689700","promoter","Os06g0689700","Hypothetical conserved gene && - && -"]
[6,28763303,28763365,63,7,0.511281234154555,0.783616083159199,-0.272334849004644,-28.8549964777426,"CHG","6:28761691:28763692","CGI_shore"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","6:28785768:28787768","CGI_shore"]
[6,29206741,29206817,77,30,0.134038027015099,0.0541623911107483,0.0798756359043506,136.58442623221,"CHH","6:29205386:29207386","CGI_shore"]
[6,29379935,29380079,145,59,0.274266428229148,0.152147604964269,0.122118823264878,330.812473925602,"CHH","Os06g0699100","promoter","ACYLTRANSFERASE 20","Transferase domain containing protein && sp|Q7XHC4|AT15_ORYSJ Acyl transferase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=AT15 PE=2 SV=1 && -"]
[6,29380933,29381019,87,33,0.0583206407751313,0.0057325737037663,0.052588067071365,143.766208872222,"CHH","6:29375540:29382630","CGI"]
[6,29676906,29677247,342,87,0.581837302239379,0.246504377563973,0.335332924675406,775.36391429399,"CG","Os06g0703000","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 217","Protein kinase, core domain containing protein && sp|Q8H1E3|PBL17_ARATH Probable serine/threonine-protein kinase PBL17 OS=Arabidopsis thaliana OX=3702 GN=PBL17 PE=1 SV=1 && PF00069:Protein kinase domain"]
[6,29700128,29700308,181,59,0.163668999553091,0.0637514152575107,0.0999175842955806,301.191830002809,"CHH","Os06g0703300","intron","Os06g0703300","Hypothetical conserved gene && - && PF13968:Domain of unknown function (DUF4220)|PF04578:Protein of unknown function, DUF594"]
[6,29908374,29908515,142,39,0.263550015241878,0.136831749567732,0.126718265674146,172.669754557614,"CHH","Os06g0707400","promoter","Os06g0707400","Conserved hypothetical protein && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && -"]
[6,29925145,29925255,111,26,0.332168259292186,0.151983002287146,0.18018525700504,152.511063999281,"CHH","Os06g0707700","promoter","Os06g0707700","NB-ARC domain containing protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && -"]
[6,30240705,30240892,188,58,0.291643695849345,0.171779503125839,0.119864192723506,256.938741758731,"CHH","6:30238987:30240987","CGI_shore"]
[6,30585348,30585502,155,20,0.13335991679999,0.456612765216247,-0.323252848416256,-96.30956002907,"CHG","6:30585066:30585682","CGI"]
[6,30929693,30929745,53,26,0.0893875616390029,0.00681432090850476,0.0825732407304982,135.731843474777,"CHH","6:30927819:30929819","CGI_shore"]
[6,30957569,30957656,88,39,0.101242727072902,0.0482625123347159,0.0529802147381858,175.115837051378,"CHH","6:30957523:30957840","CGI"]
[6,31131303,31131756,454,149,0.208965667152667,0.0953557768430573,0.11360989030961,771.332577384098,"CHH","6:31131733:31132353","CGI"]
[7,65153,65235,83,40,0.205969422469727,0.0760502773062424,0.129919145163485,238.468409596268,"CHH","7:63175:65175","CGI_shore"]
[7,266015,266189,175,35,0.0262684105411461,0.24469534973569,-0.218426939194544,-221.40353521628,"CHH","7:264363:280053","CGI"]
[7,407397,407478,82,28,0.142048313521239,0.0349257250522317,0.107122588469007,133.463201832723,"CHH","7:407209:407411","CGI"]
[7,741041,741300,260,68,0.183342422894668,0.083317583067502,0.100024839827166,317.829225622797,"CHH","7:740873:742874","CGI_shore"]
[7,826688,826787,100,29,0.142219408494254,0.0152194872576562,0.126999921236598,138.651978068367,"CHH","7:825250:827251","CGI_shore"]
[7,949878,950074,197,63,0.231908334254387,0.127460595208443,0.104447739045944,341.597083924589,"CHH","Os07g0117350","promoter","Os07g0117350","Hypothetical conserved gene && - && -"]
[7,1080697,1080884,188,50,0.301080196362036,0.151746713777669,0.149333482584366,329.874647629353,"CHH","7:1080611:1082612","CGI_shore"]
[7,1515762,1515835,74,22,0.0904471738155938,0.0301317234277699,0.0603154503878239,98.50212655926521,"CHH","7:1514784:1516784","CGI_shore"]
[7,1530362,1530593,232,70,0.204925648451954,0.0641447374773552,0.140780910974599,417.636909088938,"CHH","7:1522197:1530580","CGI"]
[7,1724316,1724371,56,7,0.346174650225274,0.692560095136215,-0.346385444910942,-43.5505646879616,"CG","Os07g0132800","promoter","Os07g0132800","Hypothetical gene && - && -"]
[7,1728144,1728244,101,18,0.130118101485924,0.0257694694535132,0.104348632032411,81.6265565662,"CHH","Target=(TATATG)n:3-102;Class=Simple_repeat","repeat"]
[7,2174487,2174855,369,87,0.120054164199236,0.0224047018509546,0.0976494623482813,450.322753006232,"CHH","Os07g0142200","promoter","Glycoprotein 1, vegetative cell wall protein gp1 precursor","Conserved hypothetical protein && - && -"]
[7,2358183,2358303,121,13,0.48112628126066,0.700588291534913,-0.219462010274252,-59.9534780051263,"CHG","7:2351842:2363033","CGI"]
[7,2446296,2446473,178,37,0.207442439668419,0.0709061244606436,0.136536315207775,173.601294479713,"CHH","7:2446034:2448034","CGI_shore"]
[7,2566810,2566867,58,18,0.192082247677664,0.0741193057996698,0.117962941877994,96.9184835732478,"CHH","7:2566077:2568078","CGI_shore"]
[7,2792670,2792929,260,86,0.196462942014829,0.0964911686546241,0.0999717733602049,441.271298867791,"CHH","7:2791962:2793962","CGI_shore"]
[7,2793020,2793172,153,44,0.268240112977975,0.162969877149696,0.105270235828279,194.949118114807,"CHH","7:2791962:2793962","CGI_shore"]
[7,3370761,3370852,92,30,0.0675610529870894,0.0115957214909236,0.0559653314961657,131.555093204685,"CHH","Os07g0163000","promoter","Os07g0163000","Similar to FAD linked oxidase family protein && sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DLD PE=1 SV=1 && -"]
[7,3532685,3532874,190,47,0.172308271153352,0.0346904698872791,0.137617801266073,218.196481759715,"CHH","7:3532081:3534081","CGI_shore"]
[7,3708715,3708799,85,26,0.458312022289711,0.294803771453342,0.163508250836369,122.06092875185,"CHH","Os07g0169800","intron","CCR4-associated factor 1-10, carbon catabolite repressor 4-associated factor 1-10, CCR4-associated factor 1C, carbon catabolite repressor 4-associated factor 1C","Ribonuclease CAF1 domain containing protein && sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1 && PF04857:CAF1 family ribonuclease"]
[7,3854465,3854703,239,52,0.385965153257782,0.195811379041335,0.190153774216447,260.164762596285,"CHH","7:3854389:3856389","CGI_shore"]
[7,3929110,3929174,65,20,0.0470908343997325,0.153124859183,-0.106034024783268,-100.184965343864,"CHH","7:3927359:3929359","CGI_shore"]
[7,3971420,3971499,80,22,0.163048536372154,0.057684546129981,0.105363990242173,111.426483952185,"CHH","7:3970990:3972991","CGI_shore"]
[7,4101704,4101893,190,68,0.369805795535219,0.186885932621133,0.182919862914086,368.037103176811,"CHH","7:4099467:4103092","CGI"]
[7,4136979,4137155,177,42,0.0863417931889305,0.0133333844998172,0.0730084086891133,266.343742319702,"CHH","7:4136555:4138556","CGI_shore"]
[7,4284648,4284785,138,35,0.0641422273187612,0.00750014854331854,0.0566420787754427,153.438050896417,"CHH","Os07g0181100","utr5","Os07g0181100","C4-dicarboxylate transporter/malic acid transport protein family protein && sp|Q9FLV9|SLAH3_ARATH S-type anion channel SLAH3 OS=Arabidopsis thaliana OX=3702 GN=SLAH3 PE=1 SV=1 && PF03595:Voltage-dependent anion channel"]
[7,4284648,4284785,138,35,0.0641422273187612,0.00750014854331854,0.0566420787754427,153.438050896417,"CHH","Os07g0181100","exon","Os07g0181100","C4-dicarboxylate transporter/malic acid transport protein family protein && sp|Q9FLV9|SLAH3_ARATH S-type anion channel SLAH3 OS=Arabidopsis thaliana OX=3702 GN=SLAH3 PE=1 SV=1 && PF03595:Voltage-dependent anion channel"]
[7,4362176,4362435,260,85,0.320359144921484,0.0312999595902284,0.289059185331256,736.03333572376,"CHH","7:4359812:4362952","CGI"]
[7,4617424,4617524,101,30,0.0845411552383315,0.0510274577505051,0.0335136974878264,102.895646260369,"CHH","7:4616207:4618208","CGI_shore"]
[7,4731496,4731565,70,13,0.0356710192596733,0.209839636092637,-0.174168616832964,-52.2234925695514,"CG","7:4729843:4731843","CGI_shore"]
[7,4797005,4797180,176,35,0.299151783261069,0.118213929580769,0.1809378536803,198.899981728391,"CHH","7:4795289:4797289","CGI_shore"]
[7,4939306,4939409,104,43,0.0979496788024996,0.0421892451995304,0.0557604336029692,192.319839301091,"CHH","Os07g0191600","promoter","ABC transporter STR2, Medicago truncatula stunted arbuscule 2","Protein of unknown function DUF569 domain containing protein && sp|A0A0M4FLW6|STR2_PETHY ABC transporter G family member STR2 OS=Petunia hybrida OX=4102 GN=STR2 PE=2 SV=1 && -"]
[7,5041409,5041580,172,36,0.266510772033448,0.0150743783686161,0.251436393664832,243.249086867951,"CHH","7:5040043:5042043","CGI_shore"]
[7,5786628,5786723,96,35,0.0693531106796505,0.169101002453035,-0.099747891773385,-161.613605739167,"CHH","7:5780574:5787881","CGI"]
[7,5800737,5800919,183,36,0.183771414486811,0.0560115630309227,0.127759851455889,200.871768829816,"CHH","7:5800623:5802624","CGI_shore"]
[7,5942884,5943046,163,47,0.0924941670821871,0.0279178136181184,0.0645763534640687,227.263561067257,"CHH","7:5940902:5942903","CGI_shore"]
[7,5982823,5982990,168,26,0.424513030451238,0.0254966856492473,0.399016344801991,173.317156286733,"CHH","7:5982661:5984662","CGI_shore"]
[7,6282277,6282561,285,78,0.129844981793615,0.0281304159076643,0.101714565885951,432.717498733742,"CHH","7:6280911:6282912","CGI_shore"]
[7,6345230,6345327,98,35,0.0736867940716771,0.0473185152583224,0.0263682788133547,130.020961175727,"CHH","7:6345017:6347017","CGI_shore"]
[7,6659928,6660138,211,43,0.185073926527725,0.0144852683493846,0.17058865817834,229.023955976468,"CHH","7:6659073:6661073","CGI_shore"]
[7,6751140,6751234,95,34,0.132003360956821,0.0462127545735766,0.0857906063832443,218.046350660026,"CHH","7:6750038:6752038","CGI_shore"]
[7,7153713,7153868,156,50,0.123530679715126,0.0392549330470991,0.0842757466680269,303.220977072114,"CHH","Os07g0227800","intron","Os07g0227800","Similar to ubiquinone biosynthesis protein ubiB && sp|Q9ASX5|Y5520_ARATH Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g05200 PE=1 SV=1 && PF03109:ABC1 family"]
[7,7183394,7183528,135,26,0.175295075538256,0.00951984735896133,0.165775228179295,143.799192162216,"CHH","7:7182559:7184560","CGI_shore"]
[7,7320584,7320664,81,21,0.140787894590321,0.0663951305235727,0.074392764066748,94.6534490097227,"CHH","7:7320187:7322187","CGI_shore"]
[7,7643460,7643618,159,46,0.184374719183175,0.040087662889657,0.144287056293518,210.366383543444,"CHH","7:7641533:7643534","CGI_shore"]
[7,7905213,7905277,65,25,0.115743815841549,0.0429882539647014,0.0727555618768479,130.57262709523,"CHH","Os07g0241700","exon","Os07g0241700","Similar to Cytokinin-N-glucosyltransferase 1 && sp|Q9C768|U76B1_ARATH UDP-glycosyltransferase 76B1 OS=Arabidopsis thaliana OX=3702 GN=UGT76B1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[7,7946067,7946213,147,55,0.0714622961668156,0.0172794860261678,0.0541828101406477,248.301016249755,"CHH","7:7944886:7946886","CGI_shore"]
[7,8072603,8072784,182,45,0.487869173560629,0.299691909845815,0.188177263714814,205.892369729326,"CG","7:8072342:8072873","CGI"]
[7,8117753,8117893,141,23,0.448739997206409,0.665095778637242,-0.216355781430833,-106.553201864131,"CHG","7:8117410:8117971","CGI"]
[7,8351502,8351612,111,11,0.490214089644698,0.729585577093927,-0.239371487449229,-47.0418587852591,"CHG","7:8347088:8352610","CGI"]
[7,8351502,8351612,111,11,0.490214089644698,0.729585577093927,-0.239371487449229,-47.0418587852591,"CHG","Os07g0250100","promoter","Os07g0250100","Similar to cytokinin-O-glucosyltransferase 2 && sp|U5NH37|7DLGT_CATRO 7-deoxyloganetic acid glucosyl transferase OS=Catharanthus roseus OX=4058 GN=7DLGT PE=1 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[7,8530835,8530981,147,29,0.1442594815777,0.0149073089570329,0.129352172620667,179.089915769126,"CHH","7:8529509:8531509","CGI_shore"]
[7,9084832,9085035,204,48,0.222145506755924,0.0310323268312566,0.191113179924667,283.731310903813,"CHH","7:9085022:9085335","CGI"]
[7,9463740,9463830,91,23,0.184150066919161,0.0883210919194785,0.0958289749996826,106.301186126798,"CHH","Os07g0265600","intron","ARGONAUTE 16","Similar to Protein argonaute 16 && sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica OX=39947 GN=AGO16 PE=2 SV=2 && PF02171:Piwi domain"]
[7,9521458,9521578,121,28,0.00672699035918792,0.113776986236269,-0.107049995877081,-152.184060996555,"CHH","7:9520334:9522335","CGI_shore"]
[7,9544232,9544419,188,59,0.227106728433879,0.0734013325809509,0.153705395852928,324.405196507959,"CG","7:9542313:9544314","CGI_shore"]
[7,9574027,9574240,214,55,0.854615659916618,0.628851242419635,0.225764417496984,260.698678480324,"CG","Os07g0267400","promoter","Os07g0267400","Peptidase C48, SUMO/Sentrin/Ubl1 domain containing protein && - && PF02902:Ulp1 protease family, C-terminal catalytic domain|PF03004:Plant transposase (Ptta/En/Spm family)"]
[7,9924049,9924128,80,12,0.173105031308556,0.407968571922572,-0.234863540614016,-60.4243641609848,"CHG","7:9922949:9924271","CGI"]
[7,9933574,9933674,101,19,0.506169756644036,0.848383937942717,-0.342214181298681,-86.0513560296077,"CG","7:9932753:9934754","CGI_shore"]
[7,10038830,10038990,161,55,0.128512247145054,0.0609881071063899,0.0675241400386637,259.997809295231,"CHH","7:10038735:10039153","CGI"]
[7,10172558,10172679,122,32,0.0968939147744044,0.0267109269125878,0.0701829878618166,152.796907532267,"CHH","Os07g0273900","promoter","Os07g0273900","Disease resistance protein domain containing protein && sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 && PF00931:NB-ARC domain|PF18052:Rx N-terminal domain"]
[7,10210724,10210799,76,28,0.153650532254689,0.0641912257426229,0.0894593065120664,138.917375163017,"CHH","Os07g0274100","promoter","Os07g0274100","Metallophosphoesterase domain containing protein && sp|Q0WVZ1|Y3330_ARATH Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana OX=3702 GN=At3g03305 PE=2 SV=1 && -"]
[7,10480928,10481007,80,30,0.0711114212368031,0.0177004547097586,0.0534109665270446,164.247959681768,"CHH","7:10480020:10482020","CGI_shore"]
[7,10871112,10871169,58,16,0.674034794363855,0.355985000460361,0.318049793903493,73.9849714938879,"CHG","7:10869782:10871782","CGI_shore"]
[7,10957391,10957516,126,40,0.185794123171655,0.061386284053995,0.12440783911766,182.0616386579,"CHH","7:10955863:10957863","CGI_shore"]
[7,11295135,11295289,155,56,0.122990246810106,0.0161692844648991,0.106820962345207,283.052666421713,"CHH","Os07g0291400","promoter","Os07g0291400","Conserved hypothetical protein && - && -"]
[7,11295135,11295289,155,56,0.122990246810106,0.0161692844648991,0.106820962345207,283.052666421713,"CHH","7:11293313:11295314","CGI_shore"]
[7,11354722,11354889,168,58,0.199459611022014,0.0751592733717394,0.124300337650275,323.059970122724,"CHH","7:11354024:11359661","CGI"]
[7,11429225,11429347,123,45,0.11225610940915,0.0466661506929982,0.065589958716152,236.602342910084,"CHH","7:11428995:11430995","CGI_shore"]
[7,11451220,11451447,228,73,0.0927494179999923,0.0259256394462163,0.066823778553776,385.489765050506,"CHH","7:11451001:11451496","CGI"]
[7,11477251,11477506,256,74,0.325989237608421,0.174435566058281,0.15155367155014,441.829622560213,"CHH","7:11477017:11479017","CGI_shore"]
[7,11573096,11573262,167,64,0.254578235210823,0.0813785785018349,0.173199656708988,480.724876878449,"CHH","7:11571277:11573277","CGI_shore"]
[7,11597490,11597542,53,22,0.460073019283033,0.301460421714335,0.158612597568699,125.565805542488,"CHH","Os07g0296200","promoter","Os07g0296200","Nucleotide-binding, alpha-beta plait domain containing protein && sp|Q9AST1|TAF15_ARATH Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|PF00641:Zn-finger in Ran binding protein and others"]
[7,11629365,11629673,309,82,0.241671607253135,0.430430251726181,-0.188758644473046,-458.811449721051,"CG","7:11628150:11630150","CGI_shore"]
[7,11629365,11629673,309,82,0.241671607253135,0.430430251726181,-0.188758644473046,-458.811449721051,"CG","Os07g0297200","utr3","Os07g0297200","Hypothetical protein && - && -"]
[7,11894996,11895055,60,17,0.164034600951005,0.0831642355973367,0.0808703653536681,75.614433141903,"CHH","Os07g0301200","promoter","RNA helicase 5","Similar to RNA helicase (Fragment) && sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1 && PF00271:Helicase conserved C-terminal domain"]
[7,12347459,12347523,65,10,0.251105672764853,0.633845803910025,-0.382740131145172,-49.4398756523904,"CHG","7:12346359:12348359","CGI_shore"]
[7,12552563,12552746,184,81,0.125708529719552,0.0543421827807608,0.0713663469387916,397.337837236308,"CHH","7:12552373:12554374","CGI_shore"]
[7,12624564,12624625,62,19,0.13612638154363,0.0148549094725093,0.121271472071121,109.614472281831,"CHH","7:12623478:12625479","CGI_shore"]
[7,12664386,12664551,166,33,0.626092541353717,0.816574081241344,-0.190481539887627,-164.745636110277,"CG","Os07g0407900","promoter","Os07g0407900","Protein of unknown function DUF679 family protein && sp|Q9M897|DMP5_ARATH Protein DMP5 OS=Arabidopsis thaliana OX=3702 GN=DMP5 PE=2 SV=1 && PF05078:Protein of unknown function (DUF679)"]
[7,12683445,12683665,221,41,0.271499208216808,0.128830320660493,0.142668887556315,217.415676728949,"CHH","7:12681971:12683972","CGI_shore"]
[7,12738352,12738427,76,26,0.176707503641007,0.0864445494001887,0.0902629542408187,126.740708964211,"CHH","7:12738161:12740162","CGI_shore"]
[7,12740963,12741236,274,95,0.275253321722914,0.117884527143528,0.157368794579386,614.966107757506,"CHH","7:12740735:12742735","CGI_shore"]
[7,12839107,12839230,124,7,0.0431872260331197,0.223696978678496,-0.180509752645377,-35.3972443017738,"CHG","7:12838982:12839856","CGI"]
[7,12886952,12887239,288,83,0.212282944124959,0.0891214842933869,0.123161459831572,438.744160158008,"CHH","Os07g0411300","promoter","POLYKETIDE SYNTHASE 10","Polyketide synthase, Pollen exine and Ubisch body patterning, Pollen wall formatio && sp|Q8LDM2|PKSB_ARATH Type III polyketide synthase B OS=Arabidopsis thaliana OX=3702 GN=PKSB PE=1 SV=1 && PF02797:Chalcone and stilbene synthases, C-terminal domain|PF00195:Chalcone and stilbene synthases, N-terminal domain"]
[7,13087057,13087126,70,31,0.0841692857611301,0.0471251727272683,0.0370441130338618,145.159691799282,"CHH","7:13085234:13087234","CGI_shore"]
[7,13191855,13192049,195,52,0.182049902219454,0.053592118581644,0.12845778363781,297.319888587516,"CHH","7:13191345:13193346","CGI_shore"]
[7,13209341,13209436,96,41,0.153817357031736,0.0611151362951088,0.0927022207366268,210.069894201931,"CHH","7:13208665:13210160","CGI"]
[7,13343045,13343165,121,17,0.428291275434164,0.251385330430387,0.176905945003777,72.5611896620506,"CHG","7:13342367:13344368","CGI_shore"]
[7,13437514,13437660,147,16,0.656602808111946,0.872802163459419,-0.216199355347473,-97.136917095948,"CG","7:13437596:13439596","CGI_shore"]
[7,13442613,13442834,222,54,0.436955310075937,0.263679175400827,0.17327613467511,312.414380782672,"CHH","7:13439597:13444218","CGI"]
[7,13563255,13563544,290,51,0.172101303592328,0.040109828137334,0.131991475454995,284.279644642001,"CHH","7:13563220:13563584","CGI"]
[7,13763364,13763652,289,99,0.184629838727835,0.0817567697991896,0.102873068928645,512.935944071016,"CHH","7:13761681:13763681","CGI_shore"]
[7,13804471,13804714,244,82,0.296055196758608,0.0379359365080586,0.25811926025055,611.984346349741,"CHH","7:13798948:13835649","CGI"]
[7,14207649,14207837,189,63,0.153784957552942,0.0678141122956852,0.0859708452572564,339.15031095644,"CHH","7:14206624:14208624","CGI_shore"]
[7,14356458,14356548,91,34,0.055131690440046,0.02159215732856,0.033539533111486,125.898521880759,"CHH","7:14355937:14357938","CGI_shore"]
[7,14531513,14531759,247,68,0.307116133872235,0.169081036525652,0.138035097346583,368.247549431616,"CHH","Os07g0435300","promoter","PHOTOSYSTEM I SUBUNIT","Photosystem I reaction center subunit IV, chloroplast precursor (PSI- E) (Photosystem I 10.8 kDa polypeptide) && sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAE PE=1 SV=2 && -"]
[7,14605883,14605960,78,17,0.525862234206572,0.140377885894456,0.385484348312116,103.033158026553,"CHH","7:14604201:14606201","CGI_shore"]
[7,14605883,14605960,78,17,0.525862234206572,0.140377885894456,0.385484348312116,103.033158026553,"CHH","Os07g0436600","promoter","Os07g0436600","Pentatricopeptide repeat domain containing protein && sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=1 SV=1 && PF13041:PPR repeat family"]
[7,14972180,14972477,298,74,0.128996812108526,0.0235723796363014,0.105424432472224,403.832981925724,"CHH","7:14971869:14973869","CGI_shore"]
[7,15162982,15163150,169,42,0.046485175105299,0.0168255547985245,0.0296596203067745,171.121815370074,"CHH","7:15160196:15172832","CGI"]
[7,15405824,15406024,201,67,0.0648533129923259,0.0104952681310197,0.0543580448613063,403.91846063029,"CHH","7:15404489:15406489","CGI_shore"]
[7,15632006,15632066,61,13,0.168675764562234,0.0404986531465392,0.128177111415695,90.7454568275759,"CHH","7:15630431:15632432","CGI_shore"]
[7,15943664,15943889,226,54,0.247872631699775,0.0269803312214429,0.220892300478332,414.575644007457,"CHH","7:15943161:15945162","CGI_shore"]
[7,16135179,16135486,308,48,0.362072450217084,0.122575752087255,0.239496698129829,253.824049884287,"CHG","7:16132972:16135544","CGI"]
[7,16628643,16629027,385,12,0.593778401679208,0.874059240056522,-0.280280838377314,-73.705387714053,"CG","Os07g0467600","intron","Os07g0467600","Similar to Plus agglutinin && - && PF09335:SNARE associated Golgi protein"]
[7,16738242,16738367,126,37,0.0742026506640824,0.0288242684345032,0.0453783822295791,180.618921604587,"CHH","7:16737217:16739218","CGI_shore"]
[7,16847943,16848037,95,26,0.0925984365935263,0.0199575698620422,0.0726408667314841,131.86459545815,"CHH","7:16847386:16849387","CGI_shore"]
[7,17173320,17173473,154,51,0.158355820802606,0.0632107633980925,0.0951450574045132,228.71400297203,"CHH","7:17172767:17177074","CGI"]
[7,17332784,17332967,184,16,0.578669429501792,0.335476707455532,0.24319272204626,77.9189217127533,"CHG","7:17332670:17334671","CGI_shore"]
[7,17578293,17578375,83,23,0.120226089706173,0.0173418366809683,0.102884253025205,121.844600170545,"CHH","7:17577356:17579356","CGI_shore"]
[7,17847990,17848143,154,30,0.277659477058562,0.125357015239739,0.152302461818823,142.820220011168,"CHH","Os07g0485500","intron","USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 11","Protein of unknown function DUF6, transmembrane domain containing protein && sp|Q9FGL0|WTR44_ARATH WAT1-related protein At5g47470 OS=Arabidopsis thaliana OX=3702 GN=At5g47470 PE=3 SV=1 && PF00892:EamA-like transporter family"]
[7,17957108,17957223,116,27,0.154459688600928,0.0558749061716193,0.0985847824293085,122.087873355121,"CHH","7:17932823:17976259","CGI"]
[7,18356243,18356319,77,17,0.121839811954976,0.00991280845899221,0.111927003495984,88.3920208957498,"CHH","7:18355810:18357811","CGI_shore"]
[7,18426404,18426501,98,22,0.263559858479474,0.01535081576569,0.248209042713784,109.005787753353,"CHH","7:18424671:18426672","CGI_shore"]
[7,18553935,18554056,122,36,0.160742335299677,0.0383368794709593,0.122405455828718,165.845319318401,"CHH","Os07g0495900","promoter","Os07g0495900","Similar to low-level beta-amylase 1 && sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana OX=3702 GN=UPF1 PE=1 SV=2 && PF13087:AAA domain|PF09416:RNA helicase (UPF2 interacting domain)|PF13086:AAA domain|PF18141:Domain of unknown function (DUF5599)"]
[7,18760040,18760119,80,29,0.116436177231673,0.0407758476325672,0.0756603295991059,148.416741137574,"CHH","7:18759353:18761353","CGI_shore"]
[7,18761219,18761352,134,63,0.139805094875484,0.0463330413883176,0.0934720534871669,354.32279708695,"CHH","Os07g0499300","exon","Os07g0499300","Similar to predicted protein && sp|Q9LZA6|SDP1_ARATH Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana OX=3702 GN=SDP1 PE=1 SV=1 && -"]
[7,18905536,18905595,60,16,0.0926235455413617,0.0134678261584911,0.0791557193828706,83.2602261749861,"CHH","7:18904534:18906534","CGI_shore"]
[7,19051068,19051220,153,42,0.250192464267772,0.141501357800596,0.108691106467176,209.681813140218,"CHH","7:19050290:19052290","CGI_shore"]
[7,19184596,19184763,168,54,0.119727285766705,0.0488605252437379,0.070866760522967,248.329132870038,"CHH","7:19184384:19186385","CGI_shore"]
[7,19536955,19537043,89,21,0.114467738338105,0.0501696466429859,0.0642980916951194,99.0795840121731,"CHH","Os07g0511500","promoter","Os07g0511500","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|P79051|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rhp16 PE=3 SV=2 && PF00176:SNF2 family N-terminal domain|PF13923:Zinc finger, C3HC4 type (RING finger)|PF00271:Helicase conserved C-terminal domain"]
[7,19633217,19633324,108,40,0.252577320837018,0.142671138227323,0.109906182609695,165.008877351368,"CHH","7:19632227:19634227","CGI_shore"]
[7,19772759,19772837,79,11,0.408757062172087,0.62670949815973,-0.217952435987643,-53.3551368329799,"CG","Os07g0515100","exon","CALCIUM-DEPENDENT PROTEIN KINASE 19","Calcium-dependent protein kinase, isoform 2 (EC 2.7.1.-) (CDPK 2) && sp|P53683|CDPKJ_ORYSJ Calcium-dependent protein kinase 19 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK19 PE=2 SV=2 && PF00069:Protein kinase domain|PF13499:EF-hand domain pair"]
[7,19909531,19909581,51,19,0.103923218193941,0.182373010023728,-0.0784497918297868,-78.3558378528592,"CG","7:19909264:19909652","CGI"]
[7,19952197,19952325,129,36,0.264985202240581,0.0374666257268643,0.227518576513717,179.060043443506,"CHH","7:19950527:19953088","CGI"]
[7,20172514,20172571,58,16,0.298284659122055,0.176448865644062,0.121835793477993,74.9890099957879,"CHH","Os07g0521800","promoter","Os07g0521800","NB-ARC domain containing protein && sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana OX=3702 GN=At3g14460 PE=3 SV=1 && PF00931:NB-ARC domain"]
[7,20282026,20282150,125,33,0.263037349793675,0.120969729505599,0.142067620288077,175.725044672363,"CHH","7:20280615:20282616","CGI_shore"]
[7,20456370,20456454,85,35,0.0905353982236162,0.0304804943823373,0.0600549038412789,121.67268490164,"CG","7:20455629:20456837","CGI"]
[7,20587168,20587283,116,34,0.229038251398822,0.127122431783687,0.101915819615135,164.388301141018,"CHH","7:20586054:20588054","CGI_shore"]
[7,20761029,20761168,140,37,0.213160906689657,0.0972348679921856,0.115926038697471,212.129146943346,"CHH","7:20759969:20761969","CGI_shore"]
[7,20887624,20887734,111,18,0.0517112290999986,0.372807251468246,-0.321096022368248,-85.8835964678611,"CHH","7:20886013:20888014","CGI_shore"]
[7,21075218,21075293,76,30,0.0971116137528054,0.0473919157970661,0.0497196979557393,128.054703194044,"CHH","7:21075016:21077016","CGI_shore"]
[7,21095850,21095936,87,27,0.289395723176317,0.138520916285824,0.150874806890493,134.996629986371,"CHH","7:21094063:21096064","CGI_shore"]
[7,21174846,21174908,63,12,0.130539279693352,0.00324281897593968,0.127296460717413,88.6243551875475,"CHH","7:21173318:21175318","CGI_shore"]
[7,21291867,21291991,125,49,0.212629282066685,0.107000469074749,0.105628812991935,235.834503755519,"CHH","Os07g0539950","utr5","Os07g0539950","Conserved hypothetical protein && - && -"]
[7,21363098,21363156,59,19,0.142812666421931,0.0449459084599955,0.0978667579619357,97.226462486052,"CHH","Os07g0541000","intron","Os07g0541000","Similar to Receptor protein kinase && sp|Q0D5R3|CRK6_ORYSJ Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 && PF00069:Protein kinase domain|PF01657:Salt stress response/antifungal"]
[7,21455460,21455513,54,17,0.195546999026005,0.0970332143252619,0.0985137847007436,73.9547876051593,"CHH","Os07g0542800","promoter","Os07g0542800","Similar to H0306B06.7 protein && - && -"]
[7,21521353,21521571,219,61,0.355570747039066,0.13795665948985,0.217614087549216,345.78349173284,"CHH","Os07g0543700","exon","Os07g0543700","Similar to Mov34/MPN/PAD-1 family protein && - && -"]
[7,21607831,21608105,275,69,0.290049665610528,0.175995072768559,0.114054592841969,302.669641334337,"CHH","7:21606364:21608364","CGI_shore"]
[7,21980643,21980707,65,26,0.333342390233971,0.212336235269553,0.121006154964418,123.684806295712,"CHH","7:21980036:21982036","CGI_shore"]
[7,22015016,22015110,95,21,0.267499949361817,0.118280805358483,0.149219144003334,99.0657964120821,"CHH","Os07g0553450","promoter","Os07g0553450","Hypothetical protein && sp|Q6ZF85|CSLF3_ORYSJ Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLF3 PE=3 SV=1 && -"]
[7,22199190,22199377,188,58,0.315684819997874,0.122246857118749,0.193437962879125,319.782033380848,"CHH","Os07g0556500","intron","Os07g0556500","Hypothetical conserved gene && - && -"]
[7,22243242,22243366,125,59,0.176224901137174,0.0318845664118064,0.144340334725367,354.461695833012,"CHH","7:22243209:22245210","CGI_shore"]
[7,22342054,22342204,151,45,0.377903428954364,0.242087698771731,0.135815730182633,210.675715550893,"CHH","Os07g0559100","promoter","Os07g0559100","Hypothetical conserved gene && - && -"]
[7,22548921,22549069,149,30,0.0165379884590182,0.1381596230364,-0.121621634577382,-159.988179638971,"CHH","7:22548412:22550413","CGI_shore"]
[7,22891862,22892046,185,78,0.460776542018308,0.331363424505914,0.129413117512393,359.904489290502,"CHH","Os07g0569166","utr3","Os07g0569166","Conserved hypothetical protein && sp|Q7XII4|REM41_ORYSJ Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1 && PF03763:Remorin, C-terminal region"]
[7,22895142,22895256,115,37,0.102917153897166,0.0358660040938953,0.0670511498032708,172.608555238256,"CHH","7:22893972:22895972","CGI_shore"]
[7,23230993,23231118,126,31,0.156696220826088,0.0403267685825459,0.116369452243542,175.623538281022,"CHH","7:23229192:23231193","CGI_shore"]
[7,23285211,23285349,139,27,0.400102957202356,0.23544771830141,0.164655238900947,144.161271579124,"CHH","7:23284959:23286960","CGI_shore"]
[7,23813199,23813359,161,35,0.280021154887697,0.0988815104018622,0.181139644485835,207.160620233372,"CHH","7:23812384:23814384","CGI_shore"]
[7,23895190,23895458,269,74,0.233037921832183,0.0630998550569556,0.169938066775228,604.972448446961,"CHH","Os07g0587200","exon","Os07g0587200","NPH3 domain containing protein && sp|Q9M2W8|Y3990_ARATH BTB/POZ domain-containing protein At3g49900 OS=Arabidopsis thaliana OX=3702 GN=At3g49900 PE=3 SV=1 && PF03000:NPH3 family"]
[7,23961937,23962055,119,37,0.174831607394087,0.0176142689448789,0.157217338449208,186.592072254072,"CHH","7:23962022:23962317","CGI"]
[7,24097534,24097634,101,14,0.172344583087063,7.63037824505683E-3,0.164714204842006,84.2796407248331,"CHH","Os07g0591300","utr3","Os_F0764","Hypothetical conserved gene && - && -"]
[7,24485999,24486105,107,35,0.648136847583472,0.754767599275255,-0.106630751691783,-134.825481802991,"CG","Os07g0600000","promoter","Os07g0600000","Conserved hypothetical protein && - && -"]
[7,24508130,24508239,110,19,0.585945022931678,0.739528120429648,-0.15358309749797,-84.0931443207021,"CG","7:24506479:24508480","CGI_shore"]
[7,24578541,24578645,105,25,0.131470739555164,0.0422109845320333,0.0892597550231311,140.399069414124,"CHH","Os07g0602050","promoter","Os07g0602050","NAD(P)-binding domain domain containing protein && sp|A0A0B6VQ48|PAR1_ROSHC Phenylacetaldehyde reductase OS=Rosa hybrid cultivar OX=128735 GN=PAR PE=1 SV=1 && -"]
[7,24756224,24756328,105,25,0.529923896688551,0.339493284169218,0.190430612519333,140.002380713406,"CHH","Os07g0604433","intron","Os07g0604433","Hypothetical protein && sp|Q6Z4G7|COBL6_ORYSJ COBRA-like protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L7 PE=3 SV=1 && -"]
[7,25304073,25304286,214,45,0.205897494169311,0.0904155158187024,0.115481978350609,222.68335103584,"CHH","Os07g0614300","intron","Os07g0614300","Similar to Von Willebrand factor type A domain containing protein, expressed && - && -"]
[7,25458173,25458266,94,37,0.0725027697040359,0.011296697114929,0.0612060725891069,181.219981427106,"CHH","Target=(TCTA)n:3-68;Class=Simple_repeat","repeat"]
[7,25727900,25728040,141,8,0.465202453853982,0.731806926529017,-0.266604472675034,-39.0558665466856,"CG","7:25727083:25729083","CGI_shore"]
[7,26339088,26339358,271,71,0.288325593018375,0.155890739923299,0.132434853095076,436.100442125948,"CHH","Os07g0634600","promoter","Os07g0634600","Similar to Pectin acetylesterase (Fragment) && sp|Q9SFF6|PAE12_ARATH Pectin acetylesterase 12 OS=Arabidopsis thaliana OX=3702 GN=PAE12 PE=2 SV=1 && PF03283:Pectinacetylesterase"]
[7,26707121,26707229,109,26,0.113982398404105,0.0546835685959453,0.0592988298081598,119.437718939396,"CHH","Os07g0641700","intron","Os07g0641700","Similar to 10 kDa chaperonin (Protein CPN10) (Protein groES) && sp|P34893|CH10_ARATH 10 kDa chaperonin, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN10 PE=1 SV=1 && PF00166:Chaperonin 10 Kd subunit"]
[7,26734251,26734313,63,4,0.125318176020255,0.657336631979158,-0.532018455958903,-19.9538273503305,"CG","7:26732672:26734672","CGI_shore"]
[7,26925682,26925763,82,33,0.165846702676992,0.0170764378635886,0.148770264813403,149.166707336848,"CHH","7:26924688:26926689","CGI_shore"]
[7,26985002,26985163,162,19,0.42610694251793,0.262823762836924,0.163283179681006,102.677384505645,"CG","7:26985094:26987095","CGI_shore"]
[7,27169049,27169173,125,48,0.073478979495091,0.0185888695652501,0.0548901099298408,205.280350068407,"CHH","7:27168237:27170238","CGI_shore"]
[7,27176712,27176975,264,89,0.333884200562909,0.190778007442889,0.14310619312002,529.745753319792,"CHH","7:27176901:27178901","CGI_shore"]
[7,27295308,27295456,149,60,0.338766454331705,0.153241006761632,0.185525447570073,305.383964061416,"CHH","7:27253463:27305165","CGI"]
[7,27479603,27479686,84,14,0.266657512690542,0.104346979865941,0.162310532824601,66.5356867873577,"CG","Os07g0654100","exon","Os07g0654100","Hypothetical protein && - && -"]
[7,27589983,27590050,68,18,0.291182184129804,0.123429668281851,0.167752515847953,108.338499915499,"CHH","7:27584977:27614567","CGI"]
[7,27689525,27689575,51,20,0.394704743512472,0.261566671789826,0.133138071722646,95.315544400177,"CHH","7:27688100:27690100","CGI_shore"]
[7,27745471,27745541,71,18,0.363182677118383,0.144565038461084,0.218617638657298,92.6012709392432,"CHH","Os07g0658600","promoter","Os07g0658600","Similar to Nucleoid DNA-binding-like protein && sp|Q6F4N5|AP25_ORYSJ Aspartyl protease 25 OS=Oryza sativa subsp. japonica OX=39947 GN=AP25 PE=2 SV=1 && PF14541:Xylanase inhibitor C-terminal|PF14543:Xylanase inhibitor N-terminal"]
[7,27849756,27849811,56,7,0.23457258507657,0.594565389394541,-0.359992804317971,-31.7877534217027,"CHG","Os07g0660700","promoter","OsWD40-149","WD repeat protein 55 domain containing protein && sp|O80775|WDR55_ARATH WD repeat-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=WDR55 PE=1 SV=2 && -"]
[7,27988909,27989042,134,43,0.518611255842598,0.374003073315963,0.144608182526634,193.741914944867,"CHH","7:27987821:27989822","CGI_shore"]
[7,28063836,28064176,341,61,0.0210967772272593,0.186845579338367,-0.165748802111107,-325.414013654259,"CHG","Os07g0664900","promoter","Os07g0664900","Similar to Short-chain dehydrogenase/reductase (Fragment) && sp|P50160|TS2_MAIZE Sex determination protein tasselseed-2 OS=Zea mays OX=4577 GN=TS2 PE=2 SV=1 && PF13561:Enoyl-(Acyl carrier protein) reductase"]
[7,28073425,28073589,165,61,0.160326873258317,0.0741437763812276,0.0861830968770897,264.181113261412,"CHH","Os07g0665000","promoter","Os07g0665000","Similar to Short-chain dehydrogenase/reductase (Fragment) && sp|Q7FAE1|MOMAS_ORYSJ Momilactone A synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0179200 PE=2 SV=1 && PF13561:Enoyl-(Acyl carrier protein) reductase"]
[7,28232411,28232537,127,25,0.279926469287203,0.0453529704067943,0.234573498880409,130.653576025436,"CHH","7:28231892:28233892","CGI_shore"]
[7,28536704,28536819,116,35,0.13076562331264,0.0323456311280052,0.0984199921846343,196.334967426029,"CHH","7:28534351:28538335","CGI"]
[7,28564378,28564517,140,29,0.411666746006463,0.228899285300449,0.182767460706014,145.969789365963,"CHH","Os07g0675200","promoter","endosperm-specific gene 114","Conserved hypothetical protein && - && -"]
[7,29006798,29006890,93,19,0.328366068177324,0.0769475843577891,0.251418483819535,96.2302771449383,"CHH","7:28980160:29021722","CGI"]
[7,29227847,29228006,160,41,0.0596491380732199,9.51756322773324E-3,0.0501315748454867,192.086975958807,"CHH","Os07g0688000","utr3","nitrate transporter 3.2","Metallophosphoesterase domain containing protein && sp|Q8H5F8|ADPRM_ORYSJ Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0688000 PE=2 SV=1 && PF00149:Calcineurin-like phosphoesterase"]
[7,29573431,29573606,176,50,0.225368041957793,0.0970291725067623,0.128338869451031,270.115308588898,"CHH","7:29571517:29573518","CGI_shore"]
[8,83427,83605,179,57,0.335640283221727,0.208918217397693,0.126722065824033,282.458869279196,"CHH","Os08g0101400","intron","Os08g0101400","Similar to cDNA clone:J023074F23, full insert sequence && sp|Q4PJX1|ODR4_MOUSE Protein odr-4 homolog OS=Mus musculus OX=10090 GN=Odr4 PE=1 SV=2 && PF14778:Olfactory receptor 4-like"]
[8,148075,148296,222,85,0.141551113169576,0.0350011094540119,0.106550003715564,429.000537547193,"CHH","8:148034:148594","CGI"]
[8,385065,385116,52,26,0.380353582372538,0.148738574902392,0.231615007470146,175.611181986542,"CHH","Os08g0108001","intron","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","Os08g0107800","promoter","Os08g0107800","Pentatricopeptide repeat domain containing protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","Os08g0107800","promoter","Os08g0107800","Pentatricopeptide repeat domain containing protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[8,753543,753660,118,32,0.104788369199739,0.0369571317851592,0.0678312374145799,198.723997501582,"CHH","ENSRNA049476273","exon","U2","U2 spliceosomal RNA && - && -"]
[8,792607,792876,270,60,0.0851151022213916,0.0164314074735215,0.0686836947478701,307.665169545885,"CHH","8:792271:800311","CGI"]
[8,1212025,1212084,60,15,0.334250303127672,0.208184637328482,0.12606566579919,68.9320689875087,"CHH","8:1211808:1213808","CGI_shore"]
[8,1212658,1212837,180,50,0.243268470677154,0.136358993847208,0.106909476829945,231.436188612335,"CHH","8:1211808:1213808","CGI_shore"]
[8,1293621,1293783,163,51,0.257521143706683,0.149723785672968,0.107797358033715,245.718824122839,"CHH","8:1286078:1298480","CGI"]
[8,1315971,1316047,77,30,0.116957788958526,0.0278526317317692,0.0891051572267565,165.274584689296,"CHH","Os08g0124250","exon","Os08g0124250","EF-hand-like domain domain containing protein && sp|P04352|CALM_CHLRE Calmodulin OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=2 && -"]
[8,1486597,1486787,191,56,0.193866962901858,0.0719907047596594,0.121876258142198,290.439405052044,"CHH","8:1485081:1487082","CGI_shore"]
[8,1615732,1615793,62,20,0.133558179834113,0.0334715192877022,0.100086660546411,109.747590352175,"CHH","8:1614969:1616970","CGI_shore"]
[8,1880879,1881074,196,38,0.284617355063087,0.0349243384485995,0.249693016614488,238.259032328599,"CHH","8:1867573:1911283","CGI"]
[8,2212336,2212473,138,34,0.155334411771321,0.0271744031355658,0.128160008635756,217.140055517412,"CHH","8:2210452:2212453","CGI_shore"]
[8,2517326,2517525,200,58,0.160884183569733,0.0543668572167945,0.106517326352938,287.66831102744,"CHH","8:2517461:2519462","CGI_shore"]
[8,2519378,2519458,81,18,0.134059158832183,0.0189317891564076,0.115127369675775,82.4706860407132,"CHH","8:2517461:2519462","CGI_shore"]
[8,2577316,2577380,65,19,0.113383551539526,0.0175061348459795,0.0958774166935464,98.0611678355427,"CHH","8:2577353:2578008","CGI"]
[8,2589920,2590074,155,61,0.191446156123298,0.0634724490724165,0.127973707050881,313.249331758433,"CHH","8:2589169:2591170","CGI_shore"]
[8,2793074,2793210,137,41,0.142220434042257,0.0548292041736871,0.0873912298685698,193.039988588543,"CHH","Os08g0148600","promoter","Os08g0148600","Similar to Endoribonuclease Dicer homolog 3a && sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1 && -"]
[8,2972115,2972309,195,48,0.271312444418613,0.131036463614651,0.140275980803962,266.343024321935,"CHH","8:2970511:2972511","CGI_shore"]
[8,3069227,3069466,240,75,0.347332172513883,0.188653046478956,0.158679126034927,425.541640622171,"CHH","8:3068641:3070642","CGI_shore"]
[8,3235243,3235294,52,20,0.185696907599492,0.0993182652929819,0.0863786423065098,92.7597344110882,"CHH","8:3233595:3235388","CGI"]
[8,3291186,3291390,205,51,0.284513677455073,0.0813915252695107,0.203122152185562,287.036825694849,"CHH","8:3291104:3293105","CGI_shore"]
[8,3397257,3397497,241,73,0.379102991765567,0.176283433907146,0.202819557858421,405.057946122772,"CHH","8:3396714:3398715","CGI_shore"]
[8,3657465,3657717,253,68,0.244636066437634,0.108542749143277,0.136093317294357,399.450630945074,"CHH","Os08g0162066","exon","Os08g0162066","Conserved hypothetical protein && - && -"]
[8,3776774,3776927,154,52,0.223133417629346,0.0539007854949627,0.169232632134383,267.846970031593,"CHH","8:3776510:3776908","CGI"]
[8,3831931,3832091,161,48,0.260275199466878,0.154329952279935,0.105945247186943,221.089619055237,"CHH","8:3830225:3832226","CGI_shore"]
[8,3881823,3881899,77,25,0.0985913637773536,0.0269285493202979,0.0716628144570557,116.647244090269,"CHH","8:3881133:3883134","CGI_shore"]
[8,4148073,4148215,143,43,0.0717452149175504,0.0239140763851857,0.0478311385323647,196.867527015485,"CHH","Os08g0170800","intron","Os08g0170800","Conserved hypothetical protein && - && -"]
[8,4246771,4246821,51,17,0.0307543369131002,0.119178179298133,-0.0884238423850329,-82.8624995153766,"CHH","8:4245823:4247823","CGI_shore"]
[8,4402092,4402394,303,126,0.140436697348326,0.0331272717299483,0.107309425618377,764.843945781099,"CHH","8:4401048:4403049","CGI_shore"]
[8,4420325,4420387,63,22,0.396226205684656,0.180214084734179,0.216012120950477,120.614670419594,"CHH","8:4420028:4420625","CGI"]
[8,4611040,4611161,122,12,0.182554674235168,0.442948770946669,-0.260394096711501,-67.3372541857945,"CG","Os08g0178800","intron","B-box-containing protein 24","Hypothetical conserved gene && - && -"]
[8,4629725,4629786,62,12,0.692861272627911,0.88723846793361,-0.194377195305699,-58.1244023254614,"CG","Os08g0179000","promoter","Os08g0179000","Protein kinase, catalytic domain domain containing protein && sp|Q9SY89|Y1661_ARATH Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 OS=Arabidopsis thaliana OX=3702 GN=At1g61610 PE=3 SV=1 && -"]
[8,4650502,4650600,99,16,0.177975402249378,0.0164046186644028,0.161570783584975,119.019412434165,"CHH","8:4650196:4652197","CGI_shore"]
[8,4861501,4861639,139,36,0.339539951574827,0.112487084136211,0.227052867438616,219.674063884232,"CHH","8:4860507:4862508","CGI_shore"]
[8,5114841,5114965,125,43,0.211286900756251,0.359604766994192,-0.148317866237941,-194.126152910623,"CG","Os08g0187500","exon","RICE OUTMOST CELL-SPECIFIC GENE 1","Similar to Roc1 && sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC1 PE=2 SV=1 && -"]
[8,5288161,5288344,184,61,0.131851946554775,0.0606604713022272,0.0711914752525479,254.408431258895,"CHH","8:5286974:5288925","CGI"]
[8,5531487,5531627,141,50,0.33535878169332,0.112430436109841,0.22292834558348,239.145127898866,"CHH","Os08g0194501","promoter","Os08g0194501","Conserved hypothetical protein && - && -"]
[8,5569850,5569941,92,24,0.615096407066421,0.852042091817357,-0.236945684750936,-118.385246411861,"CG","Os08g0195650","exon","Os08g0195650","Conserved hypothetical protein && - && -"]
[8,5894233,5894332,100,38,0.107869974012402,0.0433527708894265,0.064517203122976,197.155869839703,"CHH","8:5892725:5894725","CGI_shore"]
[8,5913124,5913415,292,104,0.0650508910464249,0.0264790070316346,0.0385718840147903,466.023079612116,"CHH","8:5912239:5914239","CGI_shore"]
[8,5989965,5990071,107,24,0.0572976392344336,0.192669353551549,-0.135371714317115,-140.375746763471,"CHH","8:5987993:5989993","CGI_shore"]
[8,6055626,6055696,71,21,0.15426168551993,0.0297082263996458,0.124553459120284,101.647620322602,"CHH","8:6051122:6056512","CGI"]
[8,6117949,6118016,68,22,0.801293298170858,0.896371158916464,-0.0950778607456061,-84.2497526714512,"CG","8:6116871:6118871","CGI_shore"]
[8,6161002,6161095,94,10,0.190265571583518,0.428416942509748,-0.23815137092623,-55.4424780991724,"CG","Os08g0205650","promoter","Os08g0205650","Hypothetical protein && - && -"]
[8,6696345,6696422,78,17,0.651976389859019,0.303886220137996,0.348090169721023,82.4047562318875,"CG","8:6677839:6696883","CGI"]
[8,6722591,6722690,100,21,0.12483113807344,0.0395371558407439,0.0852939822326957,94.6558857144732,"CHH","8:6721857:6723858","CGI_shore"]
[8,7085633,7085798,166,33,0.102713123017642,0.022475385062773,0.0802377379548687,138.911130773409,"CHH","Os08g0217800","promoter","Os08g0217800","Hypothetical protein && - && -"]
[8,7161172,7161258,87,24,0.057978001249101,0.0131790049149824,0.0447989963341186,107.226648167535,"CHH","8:7160055:7162055","CGI_shore"]
[8,7328456,7328608,153,32,0.0266457408617009,0.19392845177415,-0.167282710912449,-173.195272986205,"CHH","Os08g0220400","promoter","PECTIN METHYLESTERASE 24","Pectin lyase fold/virulence factor domain containing protein && sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana OX=3702 GN=PME32 PE=2 SV=1 && PF01095:Pectinesterase"]
[8,7464505,7464826,322,74,0.180974919044135,0.0480149160978716,0.132960002946264,419.330867528936,"CHH","8:7464003:7466004","CGI_shore"]
[8,7470379,7470647,269,125,0.139823871540057,0.0530590558705292,0.0867648156695276,575.497377479227,"CHH","8:7469024:7470652","CGI"]
[8,7564897,7565067,171,50,0.298446495010313,0.141522650052966,0.156923844957347,251.761506199524,"CHH","8:7563940:7565941","CGI_shore"]
[8,7688608,7688725,118,27,0.86689961282635,0.697603842007907,0.169295770818444,113.766491456601,"CG","8:7688410:7688799","CGI"]
[8,7900210,7900279,70,9,0.864056532214515,0.688164377944573,0.175892154269942,36.5180209748274,"CG","8:7898443:7900443","CGI_shore"]
[8,8005478,8005607,130,29,0.165262270423578,0.078953074620432,0.0863091958031462,111.291400019393,"CG","8:8004919:8005586","CGI"]
[8,8013190,8013396,207,62,0.236804784113488,0.093967580163376,0.142837203950112,360.776398502485,"CHH","8:8012786:8013222","CGI"]
[8,8192990,8193349,360,113,0.418926166407126,0.274816163701155,0.144110002705971,594.272024763356,"CHH","8:8181205:8197977","CGI"]
[8,8250397,8250502,106,24,0.25343081084312,0.484138063182881,-0.230707252339761,-101.984751201227,"CHG","8:8249519:8251519","CGI_shore"]
[8,8403956,8404066,111,28,0.125633202727919,0.00429696903246783,0.121336233695452,131.314305699463,"CHH","8:8402552:8404553","CGI_shore"]
[8,8562842,8562931,90,10,0.730626077679328,0.402430608395869,0.328195469283459,38.0636305189822,"CHG","8:8560866:8562867","CGI_shore"]
[8,8658534,8658666,133,33,0.105832526782688,0.0118436105203203,0.0939889162623675,145.134123804064,"CHH","8:8658244:8660245","CGI_shore"]
[8,8792281,8792538,258,73,0.037000543472135,0.0026131149476993,0.0343874285244357,362.996915222862,"CHH","Os08g0243866","exon","Os08g0243866","Similar to chromatin remodeling complex subunit && sp|Q9SIW2|CHR35_ARATH Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana OX=3702 GN=DRD1 PE=1 SV=1 && PF00176:SNF2 family N-terminal domain|PF00271:Helicase conserved C-terminal domain"]
[8,9116243,9116298,56,14,0.574982381453586,0.306981746332426,0.268000635121161,61.664493736587,"CHG","8:9116202:9116575","CGI"]
[8,9122460,9122858,399,110,0.213403225484082,0.0349485844639034,0.178454641020179,734.410466617032,"CHH","8:9121354:9123355","CGI_shore"]
[8,9393656,9393810,155,69,0.157290886449721,0.0629255407762439,0.0943653456734775,355.265140387096,"CHH","8:9392985:9394985","CGI_shore"]
[8,9617664,9617852,189,38,0.554036724314479,0.25516710295377,0.298869621360709,214.523284621838,"CG","8:9617384:9617869","CGI"]
[8,9751701,9751812,112,25,0.0587719397235043,0.0227647364311217,0.0360072032923826,112.70814122036,"CHH","8:9750949:9752950","CGI_shore"]
[8,9964238,9964430,193,47,0.167573379073907,0.0160746989249907,0.151498680148916,307.127305544269,"CHH","8:9963995:9965996","CGI_shore"]
[8,10274651,10274706,56,19,0.094847231789547,0.0278926464939554,0.0669545852955916,100.720040859611,"CHH","8:10273360:10275360","CGI_shore"]
[8,10547265,10547381,117,29,0.132902212164245,0.0382529251700021,0.0946492869942434,140.215276952187,"CHH","8:10546501:10547323","CGI"]
[8,10613336,10613404,69,29,0.105079154876144,0.0311692102806249,0.0739099445955188,127.426112711241,"CHH","8:10611497:10613497","CGI_shore"]
[8,10640043,10640179,137,30,0.166831187496861,0.00629256466500375,0.160538622831857,201.993918496311,"CHH","8:10639790:10641791","CGI_shore"]
[8,10900137,10900222,86,41,0.0402589543127319,0.0947095625001931,-0.0544506081874612,-159.269432586169,"CG","Os08g0280100","exon","PURPLE ACID PHOSPHATASE 23","Similar to Phytase && sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15 OS=Arabidopsis thaliana OX=3702 GN=PAP15 PE=1 SV=1 && -"]
[8,11062590,11062656,67,19,0.101130176765369,0.0113875940859908,0.0897425826793787,97.7029353582136,"CHH","Os08g0282000","promoter","Os08g0282000","Tetraspanin domain containing protein && sp|Q9C5W7|TOM2A_ARATH Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A PE=1 SV=1 && PF00335:Tetraspanin family"]
[8,11308939,11309005,67,8,0.412610590736884,0.119910947785115,0.29269964295177,39.1667935654554,"CHG","Os08g0286100","promoter","Os08g0286100","Similar to predicted protein && sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana OX=3702 GN=At3g07010 PE=2 SV=1 && PF00544:Pectate lyase"]
[8,11402789,11402923,135,34,0.381206432107586,0.187100169535964,0.194106262571623,262.548842393899,"CG","Os08g0287800","utr5","Os08g0287800","Hypothetical conserved gene && - && -"]
[8,11403699,11403763,65,17,0.694374454808287,0.88164111761183,-0.187266662803543,-72.4927243111406,"CG","Os08g0288000","promoter","Os08g0288000","Conserved hypothetical protein && - && -"]
[8,11458268,11458359,92,41,0.23356126360084,0.133053734785338,0.100507528815503,189.831436920742,"CHH","Os08g0288400","promoter","Os08g0288400","Similar to transmembrane 9 superfamily protein member 2 && sp|Q9FYQ8|TMN11_ARATH Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana OX=3702 GN=TMN11 PE=2 SV=1 && PF02990:Endomembrane protein 70"]
[8,11758150,11758232,83,15,0.475415919191158,0.712648671069278,-0.23723275187812,-71.5149616975966,"CG","Os08g0292900","promoter","HOMEOBOX45","Similar to Isoform 2 of Homeobox protein knotted-1-like 13 && sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica OX=39947 GN=OSH45 PE=2 SV=2 && PF03791:KNOX2 domain|PF05920:Homeobox KN domain"]
[8,11772367,11772449,83,9,0.209504065024589,0.6320559202752,-0.422551855250612,-42.0167278977008,"CHG","8:11772142:11774898","CGI"]
[8,11880286,11880386,101,24,0.148864985664207,0.0485821065053081,0.100282879158899,114.273504360302,"CHH","Os08g0295100","promoter","CCaMK-interacting protein of approximately 73 kD","Ubiquitin domain containing protein && sp|D5LXJ0|CIP73_LOTJA Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1 && PF00240:Ubiquitin family"]
[8,12097988,12098227,240,39,0.391420961113039,0.102417414070451,0.289003547042588,211.428012381398,"CHH","8:12097367:12099367","CGI_shore"]
[8,12128817,12128881,65,19,0.571651058932212,0.826642556584106,-0.254991497651894,-86.9493566091188,"CG","8:12128422:12130580","CGI"]
[8,12435456,12435536,81,10,0.247593665602992,0.71352064024593,-0.465926974642938,-47.1928356104482,"CHG","8:12433237:12440140","CGI"]
[8,12871243,12871406,164,40,0.478680537288327,0.655327272441909,-0.176646735153582,-178.166610326152,"CG","Os08g0307400","intron","Os08g0307400","Similar to Phosphatidylinositol 3-kinase 1 && sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform OS=Glycine max OX=3847 PE=2 SV=1 && -"]
[8,12879764,12879957,194,47,0.760492342484191,0.882536200746221,-0.12204385826203,-199.643394097786,"CG","Os08g0307601","promoter","Os08g0307601","Similar to cDNA clone:002-114-B06, full insert sequence && - && -"]
[8,12879764,12879957,194,47,0.760492342484191,0.882536200746221,-0.12204385826203,-199.643394097786,"CG","Os08g0307601","utr5","Os08g0307601","Similar to cDNA clone:002-114-B06, full insert sequence && - && -"]
[8,13879531,13879725,195,73,0.0782760747200111,0.0263475777081447,0.0519284970118665,360.550074161694,"CHH","8:13877676:13906138","CGI"]
[8,13911871,13911954,84,31,0.144604921527676,0.0551826602861163,0.0894222612415596,160.76866928323,"CHH","8:13909417:13911963","CGI"]
[8,14045715,14045857,143,53,0.148927988281205,0.0575216779981264,0.0914063102830791,274.384052795078,"CHH","8:14045018:14047019","CGI_shore"]
[8,14213128,14213335,208,69,0.0989788136774195,0.0269495393362998,0.0720292743411196,347.936529222664,"CHH","Os08g0324300","utr5","Os08g0324300","Transcriptional factor B3 family protein && sp|Q6Z0D9|Y8347_ORYSJ B3 domain-containing protein Os08g0324300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0324300 PE=2 SV=1 && PF02362:B3 DNA binding domain"]
[8,14401894,14402084,191,55,0.189206520136361,0.0837209664171069,0.105485553719254,281.864085567328,"CHH","8:14401780:14403780","CGI_shore"]
[8,15067058,15067374,317,98,0.252185427166081,0.119586911827285,0.132598515338796,458.276519947309,"CHH","8:15067287:15069288","CGI_shore"]
[8,15310066,15310135,70,20,0.0804108338537661,0.0195984794477646,0.0608123544060014,96.3629814210327,"CHH","8:15309255:15311256","CGI_shore"]
[8,15351510,15351640,131,44,0.220306631803667,0.12378002450703,0.0965266072966365,207.958495639477,"CHH","8:15350235:15352235","CGI_shore"]
[8,15493195,15493279,85,23,0.147267640438619,0.0640285067111154,0.0832391337275032,110.662653323479,"CHH","8:15491752:15493753","CGI_shore"]
[8,15493195,15493279,85,23,0.147267640438619,0.0640285067111154,0.0832391337275032,110.662653323479,"CHH","Os08g0343300","promoter","Os08g0343300","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TFA1 PE=1 SV=1 && PF02002:TFIIE alpha subunit"]
[8,15870743,15870881,139,36,0.339710871849582,0.188124815831541,0.151586056018041,193.460007306065,"CHH","8:15869510:15871510","CGI_shore"]
[8,15962919,15963015,97,23,0.199979525573409,0.505877236964099,-0.30589771139069,-121.767206107334,"CHG","8:15954293:15964849","CGI"]
[8,16043467,16043525,59,22,0.14879705145213,0.0923341316505377,0.0564629198015925,109.030388949272,"CHH","8:16042999:16043961","CGI"]
[8,16334405,16334571,167,38,0.0860816517528846,0.0104567552240348,0.0756248965288498,203.342565914193,"CHH","8:16333418:16335419","CGI_shore"]
[8,16478893,16479074,182,58,0.347322256457351,0.208374971013391,0.13894728544396,329.774017027563,"CHH","8:16478727:16478948","CGI"]
[8,16505869,16505944,76,15,0.108402192616271,0.00514377742683616,0.103258415189434,79.4612921523637,"CHH","8:16504120:16506120","CGI_shore"]
[8,16817051,16817390,340,47,0.270555917051142,0.507186947975281,-0.236631030924138,-297.001687563827,"CG","8:16816838:16823597","CGI"]
[8,16905459,16905581,123,30,0.159597778545087,0.0715123550007326,0.0880854235443548,132.116431299742,"CHH","8:16904059:16906059","CGI_shore"]
[8,17128351,17128440,90,18,0.0977595062350375,0.0184030258371717,0.0793564803978658,92.8549623944672,"CHH","Os08g0368000","promoter","Os08g0368000","Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP) && sp|Q0J649|COPD4_ORYSJ Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0368000 PE=2 SV=1 && -"]
[8,17400881,17400963,83,5,0.239090165217691,0.718244505586401,-0.47915434036871,-29.7998806980334,"CHG","8:17400915:17401174","CGI"]
[8,17612901,17612973,73,29,0.047850081383517,0.00432434004628778,0.0435257413372292,129.947505777083,"CHH","Os08g0375400","promoter","Os08g0375400","Plant disease resistance response protein family protein && - && PF03018:Dirigent-like protein"]
[8,17753543,17753639,97,26,0.297651934372956,0.0987885689206981,0.198863365452258,124.707597595859,"CHH","8:17751748:17753748","CGI_shore"]
[8,18048336,18048468,133,30,0.12349008596965,0.0117722813008739,0.111717804668776,139.213738142183,"CHH","8:18047317:18049318","CGI_shore"]
[8,18082420,18082598,179,44,0.122002058268788,0.0164774843465301,0.105524573922258,218.474604573543,"CHH","8:18080671:18082672","CGI_shore"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","8:18312302:18314303","CGI_shore"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","Os08g0387600","TSS","Os08g0387600","Hypothetical protein && - && -"]
[8,18450709,18450838,130,32,0.138020487417885,0.0403406888503564,0.0976797985675287,150.42545748743,"CHH","Os08g0389700","promoter","Os08g0389700","Conserved hypothetical protein && sp|Q8L7A0|TAUE3_ARATH Sulfite exporter TauE/SafE family protein 3 OS=Arabidopsis thaliana OX=3702 GN=At2g25737 PE=2 SV=1 && PF01925:Sulfite exporter TauE/SafE"]
[8,18522010,18522075,66,20,0.802157111792469,0.523521526516383,0.278635585276087,89.5222530177975,"CG","8:18521465:18523466","CGI_shore"]
[8,18955138,18955251,114,18,0.184105765132307,0.0551845649152463,0.128921200217061,78.6101764717576,"CHH","8:18953828:18955828","CGI_shore"]
[8,18971422,18971532,111,36,0.0449060547666127,0.0142309379826327,0.03067511678398,141.110051418733,"CHH","8:18971143:18973144","CGI_shore"]
[8,19129567,19129634,68,25,0.192329179800513,0.0263407931838269,0.165988386616686,121.1956594466,"CHH","8:19128652:19130652","CGI_shore"]
[8,19282348,19282543,196,39,0.355419080724221,0.123438744861455,0.231980335862766,255.044930513655,"CHH","Os08g0403733","utr5","Os08g0403733","Hypothetical gene && - && -"]
[8,19416486,19416912,427,117,0.164816934160604,0.0656160232451903,0.0992009109154135,680.831276247105,"CHH","8:19416421:19418422","CGI_shore"]
[8,19475636,19475707,72,7,0.182296377273398,0.677454479445448,-0.49515810217205,-33.6229629880994,"CHG","8:19474462:19476463","CGI_shore"]
[8,19733605,19733784,180,74,0.287523385942978,0.164728128993591,0.122795256949386,351.967287149709,"CHH","8:19733020:19735020","CGI_shore"]
[8,19755910,19755967,58,15,0.680493215613919,0.745817702550054,-0.065324486936135,-51.5911429865848,"CG","Os08g0413050","promoter","Os08g0413050","Hypothetical protein && sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max OX=3847 GN=CDC48 PE=2 SV=1 && PF02933:Cell division protein 48 (CDC48), domain 2|PF00004:ATPase family associated with various cellular activities (AAA)|PF17862:AAA+ lid domain"]
[8,19880714,19880785,72,12,0.100650156997805,0.0169724995421192,0.0836776574556862,89.6990042511947,"CHH","8:19879029:19881029","CGI_shore"]
[8,19912055,19912136,82,18,0.140073092959272,0.0646265187026907,0.0754465742565817,82.4596030969068,"CHH","8:19911613:19912072","CGI"]
[8,20204130,20204437,308,117,0.425473261612117,0.285639939165344,0.139833322446773,579.689598877237,"CHH","8:20202522:20204522","CGI_shore"]
[8,20231790,20231841,52,9,0.616311850310016,0.268737279322804,0.347574570987212,44.978790036897,"CHG","8:20231574:20231949","CGI"]
[8,20484551,20484606,56,14,0.0210680174630106,0.116724987661351,-0.0956569701983406,-71.4241428743405,"CHH","8:20483391:20485392","CGI_shore"]
[8,20489425,20489506,82,29,0.116005889494477,0.0363364972811966,0.07966939221328,141.508787516228,"CHH","8:20487897:20489897","CGI_shore"]
[8,20826024,20826112,89,22,0.263030512463961,0.0804644308890916,0.18256608157487,97.7215735989075,"CHH","8:20824984:20826985","CGI_shore"]
[8,20885575,20885666,92,18,0.148709094595189,0.0696099188504618,0.0790991757447273,95.3599190199157,"CHH","Os08g0431700","utr5","Os08g0431700","Hypothetical protein && - && -"]
[8,21313842,21314030,189,33,0.385097900027154,0.214274040022175,0.170823860004979,156.502584371738,"CHH","Os08g0438600","promoter","Os08g0438600","Exostosin-like family protein && sp|Q6DBG8|ARAD1_ARATH Probable arabinosyltransferase ARAD1 OS=Arabidopsis thaliana OX=3702 GN=ARAD1 PE=1 SV=1 && PF03016:Exostosin family"]
[8,21529972,21530175,204,73,0.109859856799774,0.0374094652630291,0.0724503915367452,327.414112798972,"CHH","Target=RETROFIT_I-int:2883-3328;Class=LTR/Copia","repeat"]
[8,21642606,21642660,55,12,0.166412983569716,0.0593946959435826,0.107018287626133,75.0134296182253,"CHH","8:21641760:21643760","CGI_shore"]
[8,21753468,21753638,171,52,0.293397267272571,0.115679510417131,0.17771775685544,316.358187960905,"CG","8:21753165:21755165","CGI_shore"]
[8,21755014,21755191,178,71,0.21445268742988,0.079705593796831,0.134747093633049,358.947468303426,"CHH","Os08g0446250","promoter","Os08g0446250","Hypothetical gene && sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2 && -"]
[8,21755834,21755893,60,9,0.337135723928966,0.204770067649112,0.132365656279854,37.0746753793981,"CG","8:21754392:21756393","CGI_shore"]
[8,21828355,21828448,94,25,0.270003758969692,0.163481636818455,0.106522122151237,103.372106040222,"CHH","8:21827462:21829462","CGI_shore"]
[8,21923481,21923584,104,47,0.185769550134637,0.0443766695981714,0.141392880536466,277.815270704745,"CHH","Os08g0448900","promoter","Os08g0448900","Conserved hypothetical protein && - && -"]
[8,22101472,22101542,71,20,0.0110268642821019,0.0772719853665438,-0.0662451210844418,-105.831650256912,"CHH","8:22100832:22101550","CGI"]
[8,22171111,22171210,100,22,0.250377699410038,0.0596143419423917,0.190763357467646,119.387225846234,"CHH","8:22169239:22171239","CGI_shore"]
[8,22529441,22529539,99,22,0.398629484333008,0.237423740203047,0.161205744129961,105.331730520967,"CHH","Os08g0459333","promoter","Os08g0459333","Hypothetical gene && - && -"]
[8,22546740,22546840,101,26,0.308396544838999,0.17126160377282101,0.137134941066178,123.840412021422,"CHH","8:22546439:22547740","CGI"]
[8,22877880,22877997,118,29,0.385561901653875,0.205291953808493,0.180269947845382,145.162167605798,"CHH","8:22877037:22879037","CGI_shore"]
[8,23036294,23036448,155,28,0.0216200446331301,0.129784856233398,-0.108164811600268,-129.482234756154,"CHH","Os08g0468200","TES","Os08g0468200","Hypothetical protein && sp|P16081|NIA1_ORYSJ Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIA1 PE=2 SV=3 && PF00175:Oxidoreductase NAD-binding domain|PF00970:Oxidoreductase FAD-binding domain|PF00173:Cytochrome b5-like Heme/Steroid binding domain"]
[8,23157424,23157520,97,38,0.185937693319697,0.0995527492890734,0.0863849440306236,168.550713452357,"CHH","Os08g0471150","promoter","Os08g0471150","Hypothetical protein && sp|Q6Z9R8|HFB4A_ORYSJ Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB4A PE=3 SV=1 && PF00447:HSF-type DNA-binding"]
[8,23186650,23186830,181,58,0.190588290655017,0.100693379738036,0.0898949109169811,266.909001773958,"CHH","8:23185631:23187631","CGI_shore"]
[8,23266612,23266788,177,56,0.0797180175704148,0.021803357631996,0.0579146599384188,289.12203669055,"CHH","8:23264816:23266817","CGI_shore"]
[8,23386031,23386101,71,13,0.461331992538958,0.10717935396212,0.354152638576838,90.6649864962125,"CHH","Os08g0474500","promoter","Os08g0474500","Conserved hypothetical protein && sp|A2Z225|BKI1_ORYSI Probable BRI1 kinase inhibitor 1 OS=Oryza sativa subsp. indica OX=39946 GN=BKI1 PE=3 SV=1 && -"]
[8,23682682,23682946,265,72,0.159473208858806,0.0506111362127128,0.108862072646093,373.949454797277,"CHH","8:23681668:23683669","CGI_shore"]
[8,23796984,23797154,171,41,0.196435885735665,0.0723374878262461,0.124098397909419,214.605993330784,"CHH","8:23796462:23798463","CGI_shore"]
[8,23998323,23998402,80,16,0.00829762491477927,0.0952796523021662,-0.0869820273873869,-90.713454816348,"CHH","Os08g0485500","promoter","REGULATOR OF AWN ELONGATION 2","Epidermal patterning factor-like 1 (EPFL1) protein, Small secretary signal peptide, Regulation of awn elongation (Dysfunctional RAE2 protein), Regulation of grain number, grain length, and awn developmen && - && PF17181:Epidermal patterning factor proteins"]
[8,24001924,24001994,71,15,0.260458311036889,0.106253305369828,0.154205005667062,81.5815538844679,"CHH","8:23999006:24003655","CGI"]
[8,24459737,24459814,78,23,0.18470983041553,0.0636241723161913,0.121085658099338,134.55128143071,"CHH","8:24459357:24461357","CGI_shore"]
[8,24471031,24471334,304,61,0.440524970662302,0.250556547869814,0.189968422792488,389.574381191095,"CHH","8:24471290:24471506","CGI"]
[8,24783868,24784245,378,90,0.200499672092812,0.0621388437358309,0.138360828356981,496.550239614575,"CHH","Os08g0501700","intron","WALL-ASSOCIATED KINASE GENE 76","Conserved hypothetical protein && sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana OX=3702 GN=WAK3 PE=2 SV=2 && -"]
[8,24996250,24996351,102,26,0.0328504564830447,0.204989653650196,-0.172139197167151,-142.617599009132,"CHH","8:24994478:24996616","CGI"]
[8,25115109,25115183,75,23,0.132061644234085,0.0527146126806951,0.0793470315533898,104.222028175947,"CHH","8:25114182:25116182","CGI_shore"]
[8,25172230,25172316,87,29,0.10216395897677,0.048007157738978,0.0541568012377923,132.989454539571,"CHH","8:25171942:25173942","CGI_shore"]
[8,25376842,25376998,157,65,0.23587345818264,0.0999043880540007,0.135969070128639,333.592921137886,"CHH","8:25375549:25377550","CGI_shore"]
[8,25385323,25385396,74,25,0.306890439358736,0.186608071139986,0.12028236821875,111.636405326108,"CHH","Os08g0511800","TES","Os08g0511800","Conserved hypothetical protein && - && -"]
[8,26030102,26030230,129,32,0.180063908607881,0.0373368507873197,0.142727057820561,168.458337264062,"CHH","8:26028760:26030760","CGI_shore"]
[8,26031240,26031399,160,67,0.186896297328011,0.0905381264622686,0.0963581708657423,348.717191276376,"CHH","8:26031238:26033239","CGI_shore"]
[8,26133470,26133571,102,34,0.165943632849755,0.0607928298173618,0.105150803032393,200.933723134014,"CHH","Os08g0525500","promoter","Os08g0525500","Pentatricopeptide repeat domain containing protein && - && PF13041:PPR repeat family"]
[8,26180701,26180830,130,21,0.299654775331362,0.504051472777272,-0.20439669744591,-104.952031758114,"CHG","Os08g0526300","exon","Os08g0526300","Similar to cDNA clone:001-038-D09, full insert sequence && sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGRL1A PE=1 SV=1 && -"]
[8,26716077,26716223,147,25,0.309428805064686,0.555357551488051,-0.245928746423364,-122.203626633076,"CHG","8:26715435:26716370","CGI"]
[8,26723006,26723132,127,54,0.032566478789014,0.121026073011287,-0.0884595942222735,-259.712250102186,"CHH","8:26718746:26727385","CGI"]
[8,26871132,26871361,230,69,0.0840585208080557,0.0205483458519581,0.0635101749560976,367.594635090816,"CHH","Os08g0537600","exon","Os08g0537600","Arf GTPase activating protein family protein && sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana OX=3702 GN=AGD3 PE=1 SV=1 && -"]
[8,26881954,26882042,89,25,0.188455135889478,0.0643641428836628,0.124090993005815,143.02686833134,"CHH","8:26880111:26882112","CGI_shore"]
[8,26994489,26994670,182,54,0.0591079842422381,0.00296797605765928,0.0561400081845788,282.776958146625,"CHH","8:26993837:26995838","CGI_shore"]
[8,27033544,27033764,221,65,0.314367400727953,0.141960849797219,0.172406550930735,387.175398177533,"CHH","Os08g0540100","promoter","Os08g0540100","Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase) && sp|P54967|BIOB_ARATH Biotin synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BIO2 PE=1 SV=1 && PF06968:Biotin and Thiamin Synthesis associated domain|PF04055:Radical SAM superfamily"]
[8,27137555,27137900,346,101,0.180390096274981,0.332076880293783,-0.151686784018802,-685.54977276525,"CG","Os08g0542500","utr3","Os08g0542500","Conserved hypothetical protein && - && -"]
[8,27936158,27936332,175,66,0.212053276740603,0.0927970662567648,0.119256210483839,309.506093488764,"CHH","8:27934336:27936337","CGI_shore"]
[8,28275623,28275730,108,35,0.0813270957391771,0.0112345410495435,0.0700925546896336,142.873988639964,"CHH","Os08g0564500","promoter","Os08g0564500","Zinc finger, U1-type domain containing protein && sp|B0BLT0|ZN593_XENTR Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1 && PF12171:Zinc-finger double-stranded RNA-binding"]
[8,28327612,28327680,69,8,0.811217080836588,0.452959936926586,0.358257143910002,45.7588966386613,"CG","8:28326042:28328042","CGI_shore"]
[9,21265,21337,73,8,0.904355399141729,0.778510045233436,0.125845353908294,43.4232909376189,"CG","9:1089:92951","CGI"]
[9,46977,47083,107,35,0.0730184026836477,0.0193778002586011,0.0536406024250466,158.144427864054,"CHH","9:1089:92951","CGI"]
[9,265133,265228,96,27,0.0852855283757895,0.0268797581730452,0.0584057702027443,136.008535826445,"CHH","9:263794:265794","CGI_shore"]
[9,322916,323005,90,33,0.202192957604605,0.109324949433402,0.0928680081712039,143.694346185571,"CHH","9:319381:324925","CGI"]
[9,408112,408525,414,132,0.171798943645091,0.0884793820053186,0.0833195616397728,615.822301686032,"CHH","9:408316:410316","CGI_shore"]
[9,715023,715095,73,17,0.0476698799192182,0.00411342548949599,0.0435564544297223,112.224815203772,"CHH","9:713479:715479","CGI_shore"]
[9,1002610,1002671,62,7,0.774419587516182,0.547717920579387,0.226701666936795,38.355531907171,"CHG","9:1001320:1004005","CGI"]
[9,1003535,1003645,111,28,0.574210836849561,0.804037051208604,-0.229826214359043,-130.557790915983,"CG","Os09g0112100","promoter","Os09g0112100","Hypothetical protein && - && -"]
[9,1049139,1049219,81,17,0.504396474247321,0.248440229378353,0.255956244868968,92.4028926548325,"CHG","9:1048472:1050473","CGI_shore"]
[9,1106035,1106340,306,93,0.326343497053467,0.147310964546586,0.179032532506882,737.698023902597,"CHH","9:1105600:1107600","CGI_shore"]
[9,1601244,1601300,57,4,0.317981022301851,0.742286717404833,-0.424305695102982,-23.5421113921205,"CHG","9:1601201:1601442","CGI"]
[9,1713562,1713621,60,24,0.0469578726844095,0.00331227991588449,0.043645592768525,188.010178043776,"CHH","9:1712489:1714490","CGI_shore"]
[9,1824628,1825192,565,188,0.288870457629523,0.138291400010067,0.150579057619456,955.849109380873,"CHH","9:1825026:1842956","CGI"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","9:1889451:1891452","CGI_shore"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","Os09g0124566","utr5","Os09g0124566","Hypothetical gene && - && -"]
[9,2206253,2206319,67,14,0.376674593781816,0.64169892911195,-0.265024335330134,-54.1577792793694,"CHG","9:2206211:2206708","CGI"]
[9,2578888,2579008,121,17,0.475625280192521,0.0966320154522043,0.378993264740317,75.8692847246998,"CHG","9:2578048:2580048","CGI_shore"]
[9,2621772,2621829,58,17,0.132380638445738,0.0249004736197429,0.107480164825995,93.4853049304765,"CHH","9:2621157:2631323","CGI"]
[9,2953203,2953257,55,24,0.13387054261742,0.0602473124935753,0.0736232301238451,110.008646159978,"CHH","Os09g0238700","TSS","Os09g0238700","Conserved hypothetical protein && - && -"]
[9,2955170,2955325,156,21,0.326043653275118,0.136333466399767,0.189710186875351,109.67014722092,"CHG","Os09g0238700","exon","Os09g0238700","Conserved hypothetical protein && - && -"]
[9,3055589,3055649,61,17,0.119632293037685,0.0472424350079686,0.0723898580297169,79.6295988532311,"CHH","9:3054544:3056544","CGI_shore"]
[9,3106150,3106247,98,33,0.10131390912202,0.0182353345772389,0.0830785745447808,154.482930043561,"CHH","9:3105431:3107432","CGI_shore"]
[9,3182497,3182600,104,28,0.18158258970351,0.0458273107476455,0.135755278955864,164.836274054724,"CHH","9:3180893:3182894","CGI_shore"]
[9,3280623,3280681,59,31,0.157902732350175,0.0244415645013705,0.133461167848805,159.957798527259,"CHH","Os09g0243450","utr3","Os09g0243450","Similar to Transposon mutator sub-class && - && -"]
[9,3413610,3413680,71,22,0.0935503336794198,0.0217448013194226,0.0718055323599972,93.6204222961755,"CHH","9:3407750:3417775","CGI"]
[9,3444797,3444853,57,25,0.171855847563946,0.0373956769003539,0.134460170663592,107.676316529018,"CHH","9:3443104:3445104","CGI_shore"]
[9,3842353,3842578,226,46,0.193034495936841,0.0821859294811222,0.110848566455719,215.064072188236,"CHH","9:3841643:3843644","CGI_shore"]
[9,3870139,3870232,94,14,0.25515425494716,0.0880600864574084,0.167094168489752,75.3387130118031,"CHH","Os09g0250800","intron","ABC TRANSPORTER G FAMILY MEMBER 20","Similar to ABC-2 type transporter family protein && sp|H9BZ66|ABCG1_PETHY ABC transporter G family member 1 OS=Petunia hybrida OX=4102 GN=ABCG1 PE=2 SV=1 && PF01061:ABC-2 type transporter|PF00005:ABC transporter"]
[9,4017957,4018014,58,18,0.158087251825619,0.0877526705225123,0.0703345813031063,93.4135498393008,"CHH","9:4016625:4018626","CGI_shore"]
[9,4360561,4360682,122,12,0.266372094895245,0.0933265594236111,0.173045535471634,47.7176818193655,"CHG","9:4359491:4361492","CGI_shore"]
[9,4402206,4402397,192,38,0.345392603439628,0.181781443207251,0.163611160232377,197.582440724031,"CHH","9:4401313:4403313","CGI_shore"]
[9,4499928,4500199,272,74,0.305644781391575,0.155800358622855,0.14984442276872,419.818398395488,"CHH","9:4498202:4500203","CGI_shore"]
[9,4635477,4635528,52,8,0.859254032439936,0.572932878588868,0.286321153851068,37.8463667083727,"CG","9:4634476:4636476","CGI_shore"]
[9,4649080,4649258,179,58,0.290807211417591,0.148092492347428,0.142714719070163,361.595669717983,"CHH","9:4648727:4650727","CGI_shore"]
[9,4790651,4790832,182,62,0.0822962432211459,0.0298250542935459,0.0524711889276,252.4983502662,"CHH","9:4789333:4791334","CGI_shore"]
[9,4934759,4934809,51,23,0.132796022148918,0.0399997051945603,0.0927963169543577,107.960932586947,"CHH","9:4911139:4936090","CGI"]
[9,4980655,4980823,169,52,0.162790963317688,0.0659713024914588,0.0968196608262294,258.811400350789,"CHH","Os09g0265800","promoter","Os09g0265800","HGWP repeat domain containing protein && - && -"]
[9,5382603,5382685,83,29,0.240608849007662,0.105779635013898,0.134829213993765,132.372485511819,"CHH","9:5381750:5383750","CGI_shore"]
[9,5423949,5424001,53,12,0.180836306407468,0.0356455797050544,0.145190726702414,88.1814499541889,"CHH","9:5422923:5424923","CGI_shore"]
[9,5730837,5730995,159,52,0.16077627791257,0.0383280538570147,0.122448224055556,237.559057667376,"CHH","9:5730977:5732977","CGI_shore"]
[9,6050471,6050543,73,14,0.0960932235290163,0.0118920117932642,0.084201211735752,87.567275636628,"CHH","Os09g0281900","promoter","Mediator 14_2","Thyroid hormone receptor-associated protein complex component TRAP170- like protein && sp|Q9SR02|MED14_ARATH Mediator of RNA polymerase II transcription subunit 14 OS=Arabidopsis thaliana OX=3702 GN=MED14 PE=1 SV=1 && PF08638:Mediator complex subunit MED14"]
[9,6050471,6050543,73,14,0.0960932235290163,0.0118920117932642,0.084201211735752,87.567275636628,"CHH","9:6050368:6052368","CGI_shore"]
[9,6742274,6742338,65,28,0.0613875666426919,0.239753533652285,-0.178365967009593,-137.762350085676,"CHH","9:6740426:6742426","CGI_shore"]
[9,7017677,7017773,97,11,0.40254263199678,0.0926423085686737,0.309900323428106,58.8330596636143,"CHG","Os09g0294300","exon","UBIQUITIN-CONJUGATING ENZYME 40","Ubiquitin-conjugating enzyme/RWD-like domain containing protein && sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 && PF00179:Ubiquitin-conjugating enzyme"]
[9,7166173,7166242,70,7,0.696728293136165,0.920509736439926,-0.223781443303761,-30.1333839469664,"CG","Os09g0296400","promoter","Os09g0296400","Similar to predicted protein && - && -"]
[9,7729274,7729399,126,36,0.0934936815035009,0.0103984412213601,0.0830952402821408,187.858216036036,"CHH","9:7728525:7730525","CGI_shore"]
[9,7818830,7818935,106,13,0.232159003652176,0.550576368107555,-0.318417364455379,-54.9944018659127,"CHG","9:7818338:7820339","CGI_shore"]
[9,8687963,8688141,179,52,0.118129347228264,0.0286486251056996,0.0894807221225644,316.377725777351,"CHH","9:8666698:8689485","CGI"]
[9,8893682,8893843,162,51,0.408816118611665,0.23525627427404,0.173559844337625,228.886882814882,"CHH","9:8892867:8894867","CGI_shore"]
[9,9211214,9211332,119,23,0.249849559345526,0.516828438829694,-0.266978879484168,-114.759780583609,"CG","Os09g0320400","exon","Os09g0320400","Similar to Permease && sp|Q94C70|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana OX=3702 GN=NAT2 PE=2 SV=2 && PF00860:Permease family"]
[9,9484554,9484652,99,29,0.305286952073321,0.185921901233928,0.119365050839393,134.070609235803,"CHH","Os09g0323700","promoter","class III peroxidase 121","Haem peroxidase family protein && sp|Q43729|PER57_ARATH Peroxidase 57 OS=Arabidopsis thaliana OX=3702 GN=PER57 PE=1 SV=1 && PF00141:Peroxidase"]
[9,9493962,9494414,453,102,0.283016475577656,0.156128740307082,0.126887735270574,511.144353511906,"CHH","9:9486058:9521056","CGI"]
[9,9504410,9504592,183,53,0.226491812572094,0.0823842931425475,0.144107519429546,323.410803790086,"CHH","9:9486058:9521056","CGI"]
[9,9839952,9840085,134,22,0.515247452918071,0.080679992845292,0.434567460072779,158.564959851788,"CHG","9:9839583:9844426","CGI"]
[9,9916579,9916639,61,14,0.0566603604378813,0.00389968724214455,0.0527606731957368,69.4886257331343,"CHH","Os09g0331600","intron","Os09g0331600","Ankyrin repeat domain containing protein && - && PF13962:Domain of unknown function|PF12796:Ankyrin repeats (3 copies)|PF13857:Ankyrin repeats (many copies)"]
[9,10085872,10086000,129,42,0.589899307753892,0.420002653226437,0.169896654527455,200.3128302569,"CHH","9:10085720:10087721","CGI_shore"]
[9,10151362,10151647,286,62,0.199645728838162,0.0703269995234909,0.129318729314671,331.332385377068,"CHH","9:10150942:10152942","CGI_shore"]
[9,10389731,10389790,60,15,0.0966533086159481,0.0198898991123296,0.0767634095036186,70.8165428221996,"CHH","Os09g0339601","exon","Os09g0339601","Hypothetical gene && - && -"]
[9,10842067,10842206,140,51,0.0993603950339814,0.0249315938662542,0.0744288011677272,266.696441623983,"CHH","Os09g0346400","intron","brassinosteroid receptor kinase (BRI1)-interacting protein 103, BRI1-interacting protein 103, brassinosteroid receptor kinase-interacting protein 103","Conserved hypothetical protein && sp|Q762B4|BP103_ORYSJ Proton pump-interactor BIP103 OS=Oryza sativa subsp. japonica OX=39947 GN=BIP103 PE=1 SV=1 && -"]
[9,11163948,11164064,117,19,0.141820257708871,0.0540604067258402,0.0877598509830308,94.3662296937904,"CHH","9:11164018:11166019","CGI_shore"]
[9,11241357,11241503,147,62,0.196949232084677,0.0748960635761641,0.122053168508513,311.754440238085,"CHH","Os09g0352400","promoter","Os09g0352400","Similar to Bystin && sp|Q8RWS4|BYST_ARATH Bystin OS=Arabidopsis thaliana OX=3702 GN=ENP1 PE=1 SV=1 && PF05291:Bystin"]
[9,11914902,11914964,63,15,0.0221193737044951,0.0839758755246497,-0.0618565018201546,-69.2679936821038,"CHH","9:11914039:11916039","CGI_shore"]
[9,11997653,11997740,88,18,0.174043238193798,0.0813928245349588,0.0926504136588393,78.6008677151829,"CHH","Os09g0365300","promoter","Os09g0365300","NB-ARC domain containing protein && sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1 && PF00931:NB-ARC domain"]
[9,12162631,12162728,98,29,0.0555092529601183,0.00868632286085148,0.0468229300992668,106.893855166489,"CHH","9:12162668:12164669","CGI_shore"]
[9,12394511,12394611,101,41,0.102813086405973,0.0207171537455696,0.0820959326604038,178.765703868856,"CHH","9:12394032:12398814","CGI"]
[9,12492516,12492583,68,17,0.0970366124815354,0.0217239622782332,0.0753126502033022,104.846116852083,"CHH","Os09g0373750","utr5","Os09g0373750","Hypothetical gene && - && -"]
[9,12784921,12785089,169,51,0.166966133312837,0.0462758929914482,0.120690240321389,282.376878330209,"CHH","Os09g0379600","promoter","HOMEOBOX GENE 25","Similar to Homeobox-leucine zipper protein HOX25 && sp|A3BYC1|HOX25_ORYSJ Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX25 PE=2 SV=2 && -"]
[9,12988432,12988492,61,20,0.291661432250856,0.185790411006625,0.105871021244231,94.4912368774738,"CHH","9:12988383:12990384","CGI_shore"]
[9,13166932,13167021,90,19,0.100194976612734,0.0102032242618741,0.0899917523508594,93.0561805795748,"CHH","Os09g0386200","promoter","plant U-box-containing protein 18, U-box protein 18","Armadillo-like helical domain containing protein && sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=PUB39 PE=1 SV=2 && PF04564:U-box domain"]
[9,13579850,13580126,277,75,0.597282769228071,0.403698807824999,0.193583961403072,354.440269729083,"CHH","Os09g0392700","promoter","Os09g0392700","Hypothetical conserved gene && sp|Q6K9X3|NAMT1_ORYSJ Nicotinate N-methyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NANMT1 PE=1 SV=1 && -"]
[9,13601349,13601508,160,37,0.211240190868184,0.0952477389682832,0.115992451899901,200.763371730456,"CHH","9:13600170:13602170","CGI_shore"]
[9,13622006,13622195,190,98,0.0884916117654863,0.026548581425686,0.0619430303398003,505.318454734328,"CHH","Os09g0393801","promoter","Os09g0393801","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && -"]
[9,13631443,13631569,127,36,0.104643606032287,0.0183320002647043,0.0863116057675828,179.484818663797,"CHH","9:13629850:13631851","CGI_shore"]
[9,13845231,13845290,60,13,0.233441732125458,0.366576497822532,-0.133134765697075,-51.5867189248661,"CG","9:13844250:13845848","CGI"]
[9,13871586,13871735,150,44,0.380880018425988,0.253168667227571,0.127711351198417,188.154938324705,"CHH","9:13870471:13872471","CGI_shore"]
[9,13899558,13899804,247,56,0.297397290954554,0.151751367951501,0.145645923003053,306.574317196921,"CHH","9:13899331:13901332","CGI_shore"]
[9,13962391,13962441,51,5,0.479150401605599,0.697635035343622,-0.218484633738024,-19.2325402427293,"CHG","9:13961320:13963321","CGI_shore"]
[9,13993996,13994158,163,15,0.130172810082764,0.333891005668468,-0.203718195585704,-68.4552005570321,"CG","Os09g0400300","promoter","CINNAMYL ALCOHOL DEHYDROGENASE 8C","Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195) && sp|Q6ERW7|CAD8C_ORYSJ Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica OX=39947 GN=CAD8C PE=2 SV=2 && -"]
[9,14079105,14079191,87,22,0.191810071011706,0.0908472371372988,0.100962833874408,107.221198369524,"CHH","9:14078318:14080319","CGI_shore"]
[9,14079105,14079191,87,22,0.191810071011706,0.0908472371372988,0.100962833874408,107.221198369524,"CHH","9:14078321:14080321","CGI_shore"]
[9,14283357,14283481,125,16,0.264294688834766,0.0102361764190945,0.254058512415671,86.813431584502,"CHH","Os09g0405001","promoter","Os09g0405001","Similar to Uncharacterized protein OsI_031781 && sp|A2Z5D8|Y1781_ORYSI Uncharacterized protein OsI_031781 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_031781 PE=1 SV=1 && -"]
[9,14350328,14350494,167,55,0.127123724935616,0.0499039005738057,0.0772198243618106,292.882947376838,"CHH","9:14349055:14351055","CGI_shore"]
[9,14350328,14350494,167,55,0.127123724935616,0.0499039005738057,0.0772198243618106,292.882947376838,"CHH","9:14349153:14351154","CGI_shore"]
[9,14350328,14350494,167,55,0.127123724935616,0.0499039005738057,0.0772198243618106,292.882947376838,"CHH","Os09g0406900","promoter","Os09g0406900","Hypothetical protein && - && -"]
[9,14362423,14362522,100,22,0.452274959768996,0.282460148373626,0.16981481139537,105.722248072376,"CHH","9:14360611:14362611","CGI_shore"]
[9,14362423,14362522,100,22,0.452274959768996,0.282460148373626,0.16981481139537,105.722248072376,"CHH","Os09g0407200","promoter","DNA REPAIR PROTEIN RAD23","Similar to RAD23, isoform I && sp|Q40742|RAD23_ORYSJ Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 && PF00627:UBA/TS-N domain|PF00240:Ubiquitin family|PF09280:XPC-binding domain"]
[9,14362423,14362522,100,22,0.452274959768996,0.282460148373626,0.16981481139537,105.722248072376,"CHH","9:14361528:14363529","CGI_shore"]
[9,14393158,14393289,132,33,0.222758051466007,0.117632168181033,0.105125883284974,150.479096303221,"CHH","Os09g0407800","promoter","Os09g0407800","Pentatricopeptide repeat domain containing protein && sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1 && PF13041:PPR repeat family|PF01535:PPR repeat"]
[9,14393158,14393289,132,33,0.222758051466007,0.117632168181033,0.105125883284974,150.479096303221,"CHH","9:14393069:14395070","CGI_shore"]
[9,14401329,14401496,168,67,0.100489022424929,0.0452214020520754,0.0552676203728539,312.027142234718,"CHH","Os09g0407900","promoter","Os09g0407900","Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein && sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus OX=10090 GN=Usp39 PE=1 SV=2 && PF00443:Ubiquitin carboxyl-terminal hydrolase|PF02148:Zn-finger in ubiquitin-hydrolases and other protein"]
[9,14401329,14401496,168,67,0.100489022424929,0.0452214020520754,0.0552676203728539,312.027142234718,"CHH","9:14399506:14401507","CGI_shore"]
[9,14441496,14441549,54,19,0.0882967494423691,0.0299667173886387,0.0583300320537304,82.2779115387387,"CHH","9:14441130:14442042","CGI"]
[9,14457957,14458091,135,31,0.314788842407267,0.181939624774927,0.13284921763234,153.93976474572,"CHH","Os09g0408600","promoter","Os09g0408600","Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) && sp|Q9SQI8|ODP24_ARATH Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LTA2 PE=2 SV=1 && PF02817:e3 binding domain|PF00364:Biotin-requiring enzyme|PF00198:2-oxoacid dehydrogenases acyltransferase (catalytic domain)"]
[9,14457957,14458091,135,31,0.314788842407267,0.181939624774927,0.13284921763234,153.93976474572,"CHH","9:14457801:14459802","CGI_shore"]
[9,14466756,14467028,273,66,0.650489598907627,0.469089387393556,0.181400211514072,360.373485636544,"CHH","Os09g0408933","intron","Os09g0408933","Hypothetical protein && sp|O65472|CRK12_ARATH Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=CRK12 PE=3 SV=3 && PF07714:Protein tyrosine kinase"]
[9,14466756,14467028,273,66,0.650489598907627,0.469089387393556,0.181400211514072,360.373485636544,"CHH","Os09g0408900","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 270","Similar to kinase family protein && sp|Q9LDQ3|CRK35_ARATH Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana OX=3702 GN=CRK35 PE=3 SV=3 && -"]
[9,14466756,14467028,273,66,0.650489598907627,0.469089387393556,0.181400211514072,360.373485636544,"CHH","9:14465124:14467124","CGI_shore"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","Os09g0408933","promoter","Os09g0408933","Hypothetical protein && sp|O65472|CRK12_ARATH Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=CRK12 PE=3 SV=3 && PF07714:Protein tyrosine kinase"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","9:14469109:14471110","CGI_shore"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","Os09g0408966","promoter","Os09g0408966","Hypothetical protein && sp|Q9LDQ3|CRK35_ARATH Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana OX=3702 GN=CRK35 PE=3 SV=3 && -"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","9:14469353:14471353","CGI_shore"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","9:14469109:14471110","CGI_shore"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","Os09g0408966","promoter","Os09g0408966","Hypothetical protein && sp|Q9LDQ3|CRK35_ARATH Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana OX=3702 GN=CRK35 PE=3 SV=3 && -"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","9:14469353:14471353","CGI_shore"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","Target=(CAGCT)n:1-201;Class=Simple_repeat","repeat"]
[9,14474086,14474352,267,80,0.602830090950548,0.331201163000895,0.271628927949653,433.596864370395,"CHH","9:14473962:14475963","CGI_shore"]
[9,14474086,14474352,267,80,0.602830090950548,0.331201163000895,0.271628927949653,433.596864370395,"CHH","Os09g0409000","promoter","Thionin 32","Conserved hypothetical protein && - && -"]
[9,14524554,14524622,69,14,0.0790858544182753,0.0158504218998773,0.063235432518398,83.3898634709642,"CHH","9:14523377:14525377","CGI_shore"]
[9,14548947,14549046,100,32,0.216393295358412,0.0702804966225337,0.146112798735879,188.405250684338,"CHH","9:14547218:14549218","CGI_shore"]
[9,14578867,14578942,76,19,0.173338977621463,0.0324080991466145,0.140930878474849,92.9232926385479,"CHH","9:14577639:14579639","CGI_shore"]
[9,14578867,14578942,76,19,0.173338977621463,0.0324080991466145,0.140930878474849,92.9232926385479,"CHH","9:14578656:14580657","CGI_shore"]
[9,14578867,14578942,76,19,0.173338977621463,0.0324080991466145,0.140930878474849,92.9232926385479,"CHH","9:14578678:14580678","CGI_shore"]
[9,14582977,14583049,73,8,0.503255956997232,0.247672498573024,0.255583458424208,37.6684576769427,"CHG","9:14581872:14583872","CGI_shore"]
[9,14582977,14583049,73,8,0.503255956997232,0.247672498573024,0.255583458424208,37.6684576769427,"CHG","9:14582663:14583094","CGI"]
[9,14582977,14583049,73,8,0.503255956997232,0.247672498573024,0.255583458424208,37.6684576769427,"CHG","9:14581295:14583296","CGI_shore"]
[9,14610050,14610177,128,19,0.234595118369217,0.0718417031032308,0.162753415265986,106.663264860312,"CHH","Os09g0411650","promoter","SET protein 36","Similar to Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose- bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcMT) && sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RBCMT PE=2 SV=1 && PF00856:SET domain|PF09273:Rubisco LSMT substrate-binding"]
[9,14610050,14610177,128,19,0.234595118369217,0.0718417031032308,0.162753415265986,106.663264860312,"CHH","9:14609888:14611889","CGI_shore"]
[9,14641869,14641934,66,15,0.424758970814416,0.262723879334916,0.1620350914795,71.6049765015503,"CHH","9:14641527:14643528","CGI_shore"]
[9,14641869,14641934,66,15,0.424758970814416,0.262723879334916,0.1620350914795,71.6049765015503,"CHH","9:14641877:14643877","CGI_shore"]
[9,14669626,14669806,181,64,0.176997742773596,0.047475154455764,0.129522588317832,364.712391483642,"CHH","9:14669182:14671183","CGI_shore"]
[9,14690662,14690767,106,30,0.106020822145789,0.313491882483549,-0.20747106033776,-174.743695283551,"CHH","Os09g0413300","promoter","PENTATRICOPEPTIDE REPEAT PROTEIN 1","Pentatricopeptide repeat domain containing protein && sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2 && -"]
[9,14690662,14690767,106,30,0.106020822145789,0.313491882483549,-0.20747106033776,-174.743695283551,"CHH","9:14690334:14692335","CGI_shore"]
[9,14717004,14717126,123,33,0.311637051240655,0.600121758172686,-0.288484706932031,-167.072039294764,"CHH","9:14715315:14717315","CGI_shore"]
[9,14717004,14717126,123,33,0.311637051240655,0.600121758172686,-0.288484706932031,-167.072039294764,"CHH","9:14716490:14718490","CGI_shore"]
[9,14742412,14742464,53,17,0.0954282756195897,0.045145217522622,0.0502830580969676,82.6952081389723,"CHH","9:14732830:14766854","CGI"]
[9,14877306,14877436,131,39,0.141578227444273,0.0562022724955339,0.0853759549487386,204.288667890895,"CHH","9:14875802:14877802","CGI_shore"]
[9,14877306,14877436,131,39,0.141578227444273,0.0562022724955339,0.0853759549487386,204.288667890895,"CHH","Os09g0415800","intron","phosphofructokinase 8","Phosphofructokinase family protein && sp|Q8VYN6|PFKA5_ARATH ATP-dependent 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PFK5 PE=1 SV=1 && PF00365:Phosphofructokinase"]
[9,14921119,14921267,149,36,0.228244276964329,0.0423798640422967,0.185864412922032,191.702682910585,"CHH","9:14920924:14922925","CGI_shore"]
[9,14922279,14922336,58,16,0.105827032041304,0.180710390937109,-0.0748833588958051,-70.859578639273,"CHH","9:14920924:14922925","CGI_shore"]
[9,14922279,14922336,58,16,0.105827032041304,0.180710390937109,-0.0748833588958051,-70.859578639273,"CHH","Os09g0416700","intron","Os09g0416700","Vesicle transport v-SNARE family protein && sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana OX=3702 GN=GOS11 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus"]
[9,14922933,14923120,188,40,0.293118701359356,0.0865729912742391,0.206545710085117,211.167831444518,"CHH","Os09g0416700","intron","Os09g0416700","Vesicle transport v-SNARE family protein && sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana OX=3702 GN=GOS11 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus"]
[9,14990229,14990375,147,36,0.217637948614172,0.0764279458390121,0.14121000277516,202.157131485441,"CHH","9:14988648:14990648","CGI_shore"]
[9,14990229,14990375,147,36,0.217637948614172,0.0764279458390121,0.14121000277516,202.157131485441,"CHH","9:14989906:14991907","CGI_shore"]
[9,14991950,14992011,62,21,0.122424715562858,0.0457064151717577,0.0767183003910999,99.8035395159527,"CHH","9:14990858:14992859","CGI_shore"]
[9,14991950,14992011,62,21,0.122424715562858,0.0457064151717577,0.0767183003910999,99.8035395159527,"CHH","9:14991090:14993090","CGI_shore"]
[9,15003502,15003605,104,29,0.342958746369616,0.209544295292787,0.133414451076828,132.519885032107,"CHH","9:15001806:15004366","CGI"]
[9,15016839,15016999,161,13,0.326316959047496,0.537668771874066,-0.21135181282657,-60.9749613927232,"CG","Os09g0418250","promoter","Os09g0418250","Hypothetical conserved gene && - && -"]
[9,15016839,15016999,161,13,0.326316959047496,0.537668771874066,-0.21135181282657,-60.9749613927232,"CG","9:15016425:15018426","CGI_shore"]
[9,15016839,15016999,161,13,0.326316959047496,0.537668771874066,-0.21135181282657,-60.9749613927232,"CG","9:15016458:15018458","CGI_shore"]
[9,15045850,15045943,94,28,0.219818732434775,0.0988637252186343,0.12095500721614,155.816465350104,"CHH","Os09g0418800","intron","Os09g0418800","Hypothetical gene && sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2 && -"]
[9,15045850,15045943,94,28,0.219818732434775,0.0988637252186343,0.12095500721614,155.816465350104,"CHH","Os09g0418700","promoter","Os09g0418700","Similar to R111 && - && -"]
[9,15045850,15045943,94,28,0.219818732434775,0.0988637252186343,0.12095500721614,155.816465350104,"CHH","9:15024620:15047571","CGI"]
[9,15048994,15049072,79,15,0.186893286619872,0.0884787428821462,0.0984145437377259,70.6960957052429,"CHH","Os09g0418800","promoter","Os09g0418800","Hypothetical gene && sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2 && -"]
[9,15048994,15049072,79,15,0.186893286619872,0.0884787428821462,0.0984145437377259,70.6960957052429,"CHH","9:15047571:15049572","CGI_shore"]
[9,15056290,15056358,69,20,0.143084765683703,0.215012174402279,-0.0719274087185757,-88.9082790906463,"CHH","9:15054295:15056295","CGI_shore"]
[9,15056290,15056358,69,20,0.143084765683703,0.215012174402279,-0.0719274087185757,-88.9082790906463,"CHH","9:15054852:15056853","CGI_shore"]
[9,15056290,15056358,69,20,0.143084765683703,0.215012174402279,-0.0719274087185757,-88.9082790906463,"CHH","9:15056296:15059954","CGI"]
[9,15056417,15056585,169,47,0.895861507862653,0.762056738207274,0.133804769655379,190.837781136409,"CG","9:15054852:15056853","CGI_shore"]
[9,15056417,15056585,169,47,0.895861507862653,0.762056738207274,0.133804769655379,190.837781136409,"CG","9:15056296:15059954","CGI"]
[9,15060766,15060999,234,50,0.201657856488055,0.0375072245485315,0.164150631939523,359.030346021081,"CHH","9:15059954:15061955","CGI_shore"]
[9,15061801,15061889,89,28,0.404148166025761,0.261274493973591,0.142873672052169,135.123794925996,"CHH","9:15059954:15061955","CGI_shore"]
[9,15064391,15064499,109,25,0.253674512167211,0.130877691587878,0.122796820579333,115.601795895353,"CHH","9:15063146:15065146","CGI_shore"]
[9,15064391,15064499,109,25,0.253674512167211,0.130877691587878,0.122796820579333,115.601795895353,"CHH","Os09g0419100","promoter","Os09g0419100","Hypothetical protein && - && -"]
[9,15072724,15072896,173,47,0.16789712121611,0.051145045772619,0.116752075443491,269.498172662129,"CHH","9:15071255:15073255","CGI_shore"]
[9,15080456,15080599,144,28,0.46575112307105,0.316090873519902,0.149660249551148,127.983103424383,"CHH","Os09g0419200","promoter","cinnamoyl CoA reductase 19","NAD(P)-binding domain containing protein && sp|A0A059TC02|CCR1_PETHY Cinnamoyl-CoA reductase 1 OS=Petunia hybrida OX=4102 GN=CCR1 PE=1 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[9,15124984,15125177,194,72,0.229181151634285,0.0412935533081956,0.187887598326089,454.370699707881,"CHH","9:15124276:15126277","CGI_shore"]
[9,15124984,15125177,194,72,0.229181151634285,0.0412935533081956,0.187887598326089,454.370699707881,"CHH","9:15124304:15126304","CGI_shore"]
[9,15124984,15125177,194,72,0.229181151634285,0.0412935533081956,0.187887598326089,454.370699707881,"CHH","Os09g0420100","promoter","Os09g0420100","Zinc finger, C6HC-type domain containing protein && sp|Q6DH94|R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1 && PF01485:IBR domain, a half RING-finger domain"]
[9,15125228,15125339,112,41,0.210691372800901,0.0710210654541522,0.139670307346749,235.607673636009,"CHH","9:15124276:15126277","CGI_shore"]
[9,15125228,15125339,112,41,0.210691372800901,0.0710210654541522,0.139670307346749,235.607673636009,"CHH","9:15124304:15126304","CGI_shore"]
[9,15125228,15125339,112,41,0.210691372800901,0.0710210654541522,0.139670307346749,235.607673636009,"CHH","Os09g0420100","promoter","Os09g0420100","Zinc finger, C6HC-type domain containing protein && sp|Q6DH94|R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1 && PF01485:IBR domain, a half RING-finger domain"]
[9,15130367,15130441,75,18,0.253352320281414,0.0902110421612091,0.163141278120205,86.4157959824528,"CHH","9:15129743:15131743","CGI_shore"]
[9,15130367,15130441,75,18,0.253352320281414,0.0902110421612091,0.163141278120205,86.4157959824528,"CHH","Os09g0420200","intron","Os09g0420200","Conserved hypothetical protein && - && -"]
[9,15130367,15130441,75,18,0.253352320281414,0.0902110421612091,0.163141278120205,86.4157959824528,"CHH","9:15130361:15132362","CGI_shore"]
[9,15197506,15197686,181,76,0.196342970646298,0.0484480620299891,0.147894908616309,415.658895418678,"CHH","9:15195523:15197523","CGI_shore"]
[9,15197506,15197686,181,76,0.196342970646298,0.0484480620299891,0.147894908616309,415.658895418678,"CHH","9:15197524:15199282","CGI"]
[9,15222001,15222300,300,70,0.167043346921696,0.0450348842663543,0.122008462655342,377.161014350618,"CHH","9:15221360:15225383","CGI"]
[9,15222570,15222656,87,14,0.638972165483321,0.88474081139859,-0.245768645915269,-84.2719323555774,"CG","9:15221360:15225383","CGI"]
[9,15225546,15225648,103,22,0.491737963601322,0.263886827273803,0.227851136327519,129.717800018674,"CHH","Os09g0421300","intron","PHOSPHOLIPASE D alpha 8","Phospholipase D lambda && sp|Q38882|PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana OX=3702 GN=PLDALPHA1 PE=1 SV=2 && PF12357:Phospholipase D C terminal|PF00168:C2 domain|PF13091:PLD-like domain|PF00614:Phospholipase D Active site motif"]
[9,15225546,15225648,103,22,0.491737963601322,0.263886827273803,0.227851136327519,129.717800018674,"CHH","9:15225383:15227384","CGI_shore"]
[9,15227554,15227732,179,20,0.524200943720077,0.787681988280101,-0.263481044560024,-124.82197189614,"CG","Os09g0421300","promoter","PHOSPHOLIPASE D alpha 8","Phospholipase D lambda && sp|Q38882|PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana OX=3702 GN=PLDALPHA1 PE=1 SV=2 && PF12357:Phospholipase D C terminal|PF00168:C2 domain|PF13091:PLD-like domain|PF00614:Phospholipase D Active site motif"]
[9,15253793,15253907,115,20,0.1214377403322,0.316817942090056,-0.195380201757856,-107.246542984921,"CG","9:15253818:15255818","CGI_shore"]
[9,15253793,15253907,115,20,0.1214377403322,0.316817942090056,-0.195380201757856,-107.246542984921,"CG","9:15253176:15255177","CGI_shore"]
[9,15253793,15253907,115,20,0.1214377403322,0.316817942090056,-0.195380201757856,-107.246542984921,"CG","Os09g0422000","intron","hydroxycinnamoyl CoA_shikimate/quinate hydroxycinnamoyl transferase 3","Transferase family protein && sp|Q5SMM8|PHT1_ORYSJ Putrescine hydroxycinnamoyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PHT1 PE=2 SV=1 && PF02458:Transferase family"]
[9,15263247,15263403,157,27,0.160328850689159,0.013310808589571,0.147018042099588,157.219013398247,"CHH","9:15261745:15263745","CGI_shore"]
[9,15263247,15263403,157,27,0.160328850689159,0.013310808589571,0.147018042099588,157.219013398247,"CHH","9:15262422:15264423","CGI_shore"]
[9,15319265,15319369,105,31,0.204497050054461,0.0958285009807837,0.108668549073677,139.994047076306,"CHH","Os09g0423200","promoter","Os09g0423200","Protein kinase, catalytic domain domain containing protein && sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana OX=3702 GN=At2g24130 PE=3 SV=1 && PF00069:Protein kinase domain|PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain"]
[9,15319265,15319369,105,31,0.204497050054461,0.0958285009807837,0.108668549073677,139.994047076306,"CHH","9:15318682:15323809","CGI"]
[9,15327032,15327098,67,22,0.123994506635469,0.0658150752848294,0.0581794313506399,109.08585134256,"CHH","9:15325436:15327436","CGI_shore"]
[9,15327032,15327098,67,22,0.123994506635469,0.0658150752848294,0.0581794313506399,109.08585134256,"CHH","Os09g0423300","promoter","Os09g0423300","Pentatricopeptide repeat domain containing protein && sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30825 PE=2 SV=2 && PF13041:PPR repeat family"]
[9,15327032,15327098,67,22,0.123994506635469,0.0658150752848294,0.0581794313506399,109.08585134256,"CHH","9:15326866:15328866","CGI_shore"]
[9,15353221,15353385,165,24,0.107569121583015,0.0282278206576111,0.0793413009254037,150.768120032735,"CHH","Os09g0423600","intron","MGD1","Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46) && sp|Q69QJ7|MGDG1_ORYSJ Probable monogalactosyldiacylglycerol synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MGD1 PE=2 SV=1 && PF04101:Glycosyltransferase family 28 C-terminal domain|PF06925:Monogalactosyldiacylglycerol (MGDG) synthase"]
[9,15353221,15353385,165,24,0.107569121583015,0.0282278206576111,0.0793413009254037,150.768120032735,"CHH","9:15352996:15354996","CGI_shore"]
[9,15382653,15382850,198,53,0.292573325202713,0.130848267638083,0.16172505756463,296.451400619831,"CHH","9:15381850:15382702","CGI"]
[9,15382653,15382850,198,53,0.292573325202713,0.130848267638083,0.16172505756463,296.451400619831,"CHH","Os09g0424200","intron","Os09g0424200","Glutamine amidotransferase class-I domain containing protein && sp|Q9M0A5|GGP3_ARATH Gamma-glutamyl peptidase 3 OS=Arabidopsis thaliana OX=3702 GN=GGP3 PE=1 SV=1 && PF00117:Glutamine amidotransferase class-I"]
[9,15382653,15382850,198,53,0.292573325202713,0.130848267638083,0.16172505756463,296.451400619831,"CHH","9:15382702:15384703","CGI_shore"]
[9,15428496,15428678,183,38,0.145894057147666,0.0502320969067916,0.0956619602408747,181.917079863364,"CHH","9:15427938:15429939","CGI_shore"]
[9,15428496,15428678,183,38,0.145894057147666,0.0502320969067916,0.0956619602408747,181.917079863364,"CHH","9:15428044:15430044","CGI_shore"]
[9,15434926,15435050,125,30,0.179412963834728,0.0354973505832846,0.143915613251443,137.089324812249,"CHH","9:15431895:15439979","CGI"]
[9,15436356,15436513,158,43,0.325074687457039,0.179744649849295,0.145330037607744,249.26077893546,"CHH","Os09g0425700","promoter","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15436356,15436513,158,43,0.325074687457039,0.179744649849295,0.145330037607744,249.26077893546,"CHH","9:15431895:15439979","CGI"]
[9,15437417,15437579,163,47,0.359860950020171,0.207494373401839,0.152366576618332,244.952342714212,"CHH","Os09g0425700","promoter","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15437417,15437579,163,47,0.359860950020171,0.207494373401839,0.152366576618332,244.952342714212,"CHH","9:15431895:15439979","CGI"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425700","exon","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","9:15439798:15441798","CGI_shore"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425800","promoter","Os09g0425800","Hypothetical protein && - && -"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","9:15439979:15441980","CGI_shore"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425700","utr3","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425700","TES","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","9:15439798:15441798","CGI_shore"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","Os09g0425800","promoter","Os09g0425800","Hypothetical protein && - && -"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","9:15439979:15441980","CGI_shore"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","9:15440864:15442864","CGI_shore"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","9:15439798:15441798","CGI_shore"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","Os09g0425800","promoter","Os09g0425800","Hypothetical protein && - && -"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","9:15439979:15441980","CGI_shore"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","9:15440864:15442864","CGI_shore"]
[9,15549665,15549827,163,43,0.530985141478328,0.309418657114757,0.221566484363571,218.516063233366,"CHH","Os09g0428000","promoter","CELLULOSE SYNTHASE LIKE C2","Glycosyl transferase, family 2 domain containing protein && sp|Q69L19|CSLC2_ORYSJ Probable xyloglucan glycosyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLC2 PE=2 SV=2 && PF13641:Glycosyltransferase like family 2"]
[9,15549665,15549827,163,43,0.530985141478328,0.309418657114757,0.221566484363571,218.516063233366,"CHH","9:15549515:15551516","CGI_shore"]
[9,15554931,15555125,195,53,0.233905156136222,0.115973404917135,0.117931751219087,302.437907288772,"CHH","9:15553759:15555759","CGI_shore"]
[9,15646288,15646439,152,7,0.184341439704459,0.802062158884391,-0.617720719179932,-47.7274221773296,"CHG","9:15644939:15646939","CGI_shore"]
[9,15646288,15646439,152,7,0.184341439704459,0.802062158884391,-0.617720719179932,-47.7274221773296,"CHG","9:15645092:15647093","CGI_shore"]
[9,15646288,15646439,152,7,0.184341439704459,0.802062158884391,-0.617720719179932,-47.7274221773296,"CHG","9:15645766:15647766","CGI_shore"]
[9,15674059,15674159,101,25,0.24101703770794,0.012346451325505,0.228670586382435,133.984136364757,"CHH","9:15673364:15675364","CGI_shore"]
[9,15679190,15679342,153,30,0.111695647155027,0.395076061900504,-0.283380414745477,-157.961208034406,"CG","9:15679035:15680833","CGI"]
[9,15704682,15704747,66,23,0.108412531411514,0.0554076570151653,0.0530048743963488,96.2858930010034,"CHH","9:15702997:15704998","CGI_shore"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","Os09g0431050","intron","Os09g0431050","Hypothetical gene && sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana OX=3702 GN=GLR2.7 PE=2 SV=3 && PF01094:Receptor family ligand binding region"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","Os09g0431100","exon","Glutamate receptor homolog 1.3, GLUTAMATE RECEPTOR-LIKE 1.1","GPCR, family 3, metabotropic glutamate receptor-like protein && sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2 && PF00497:Bacterial extracellular solute-binding proteins, family 3|PF00060:Ligand-gated ion channel|PF01094:Receptor family ligand binding region"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","Os09g0431100","intron","Glutamate receptor homolog 1.3, GLUTAMATE RECEPTOR-LIKE 1.1","GPCR, family 3, metabotropic glutamate receptor-like protein && sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2 && PF00497:Bacterial extracellular solute-binding proteins, family 3|PF00060:Ligand-gated ion channel|PF01094:Receptor family ligand binding region"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","9:15726614:15754633","CGI"]
[9,15866930,15867064,135,34,0.200134041097134,0.0313296312177464,0.168804409879388,193.008053507003,"CHH","9:15857437:15870015","CGI"]
[9,15873668,15873739,72,26,0.424288737985847,0.221235396811626,0.203053341174222,129.751719356101,"CHH","9:15872358:15874358","CGI_shore"]
[9,15877519,15877944,426,130,0.224522791745128,0.0931791409866543,0.131343650758473,735.253463211393,"CHH","9:15876479:15878480","CGI_shore"]
[9,15882422,15882646,225,51,0.433478576100183,0.109862831304658,0.323615744795524,374.11029149196,"CHH","9:15880835:15882836","CGI_shore"]
[9,15931512,15931586,75,26,0.137659444839035,0.0348215664284149,0.10283787841062,160.231088831649,"CHH","9:15930709:15932710","CGI_shore"]
[9,15931512,15931586,75,26,0.137659444839035,0.0348215664284149,0.10283787841062,160.231088831649,"CHH","Os09g0433900","intron","ALANINE AMINOTRANSFERASE 5","Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) && sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum OX=4540 PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[9,15931823,15931974,152,41,0.309891321833122,0.0872778586615998,0.222613463171522,170.101653592758,"CHH","9:15930709:15932710","CGI_shore"]
[9,15931823,15931974,152,41,0.309891321833122,0.0872778586615998,0.222613463171522,170.101653592758,"CHH","Os09g0433900","intron","ALANINE AMINOTRANSFERASE 5","Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) && sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum OX=4540 PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[9,15964352,15964421,70,21,0.0847851401311233,0.00478641785424373,0.0799987222768796,116.323352893691,"CHH","9:15962855:15964855","CGI_shore"]
[9,16104536,16104608,73,29,0.0844183589368554,0.0302062569225979,0.0542121020142575,123.712874636619,"CHH","9:16103492:16105493","CGI_shore"]
[9,16184134,16184279,146,25,0.00857000951243279,0.1465612797444,-0.137991270231968,-154.293594261959,"CHH","9:16182390:16184390","CGI_shore"]
[9,16184134,16184279,146,25,0.00857000951243279,0.1465612797444,-0.137991270231968,-154.293594261959,"CHH","9:16183909:16185909","CGI_shore"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438000","promoter","RESPIRATORY BURST OXIDASE HOMOLOG G","Similar to RbohAOsp (Fragment) && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08022:FAD-binding domain|PF08414:Respiratory burst NADPH oxidase|PF08030:Ferric reductase NAD binding domain|PF01794:Ferric reductase like transmembrane component"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438000","exon","RESPIRATORY BURST OXIDASE HOMOLOG G","Similar to RbohAOsp (Fragment) && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08022:FAD-binding domain|PF08414:Respiratory burst NADPH oxidase|PF08030:Ferric reductase NAD binding domain|PF01794:Ferric reductase like transmembrane component"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438000","utr5","RESPIRATORY BURST OXIDASE HOMOLOG G","Similar to RbohAOsp (Fragment) && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08022:FAD-binding domain|PF08414:Respiratory burst NADPH oxidase|PF08030:Ferric reductase NAD binding domain|PF01794:Ferric reductase like transmembrane component"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","9:16185910:16188589","CGI"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438050","exon","Os09g0438050","Hypothetical protein && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08414:Respiratory burst NADPH oxidase"]
[9,16238524,16238598,75,14,0.0935511927048983,0.0352680515264984,0.0582831411783999,70.7918000158221,"CHH","Os09g0438700","intron","Os09g0438700","Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20) && sp|O65282|CH20_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2 && PF00166:Chaperonin 10 Kd subunit"]
[9,16238524,16238598,75,14,0.0935511927048983,0.0352680515264984,0.0582831411783999,70.7918000158221,"CHH","9:16238370:16240370","CGI_shore"]
[9,16280133,16280313,181,78,0.252004777705327,0.171962551578471,0.0800422261268564,292.585037175223,"CHH","9:16278965:16280966","CGI_shore"]
[9,16280133,16280313,181,78,0.252004777705327,0.171962551578471,0.0800422261268564,292.585037175223,"CHH","9:16279347:16281347","CGI_shore"]
[9,16300075,16300247,173,49,0.470891081650383,0.275512469709725,0.195378611940658,255.253165601512,"CHH","9:16299863:16301864","CGI_shore"]
[9,16305072,16305173,102,28,0.0981685166229364,0.0214923729842978,0.0766761436386386,157.980378215109,"CHH","9:16304294:16306294","CGI_shore"]
[9,16305072,16305173,102,28,0.0981685166229364,0.0214923729842978,0.0766761436386386,157.980378215109,"CHH","Os09g0439700","promoter","Os09g0439700","Transmembrane receptor, eukaryota domain containing protein && sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis OX=8364 GN=tmem87a PE=2 SV=1 && PF06814:Lung seven transmembrane receptor"]
[9,16305072,16305173,102,28,0.0981685166229364,0.0214923729842978,0.0766761436386386,157.980378215109,"CHH","9:16304912:16306913","CGI_shore"]
[9,16305859,16306116,258,48,0.456461081362142,0.194986438077153,0.261474643284989,261.526276999556,"CHH","9:16304294:16306294","CGI_shore"]
[9,16305859,16306116,258,48,0.456461081362142,0.194986438077153,0.261474643284989,261.526276999556,"CHH","Os09g0439700","promoter","Os09g0439700","Transmembrane receptor, eukaryota domain containing protein && sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis OX=8364 GN=tmem87a PE=2 SV=1 && PF06814:Lung seven transmembrane receptor"]
[9,16305859,16306116,258,48,0.456461081362142,0.194986438077153,0.261474643284989,261.526276999556,"CHH","9:16304912:16306913","CGI_shore"]
[9,16314089,16314187,99,34,0.206888045853922,0.0247343141433132,0.182153731710608,222.986789803793,"CHH","9:16312743:16314743","CGI_shore"]
[9,16314089,16314187,99,34,0.206888045853922,0.0247343141433132,0.182153731710608,222.986789803793,"CHH","9:16313553:16315554","CGI_shore"]
[9,16314089,16314187,99,34,0.206888045853922,0.0247343141433132,0.182153731710608,222.986789803793,"CHH","9:16313878:16315878","CGI_shore"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","9:16340969:16342970","CGI_shore"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","Os09g0440600","promoter","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","9:16341892:16343893","CGI_shore"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","9:16342739:16347648","CGI"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","Os09g0440600","promoter","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","9:16341892:16343893","CGI_shore"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","9:16342739:16347648","CGI"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","Os09g0440600","TSS","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","Os09g0440600","exon","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16359980,16360143,164,54,0.0721409502247902,0.0202443181188841,0.0518966321059061,242.85618769961,"CHH","9:16355744:16363176","CGI"]
[9,16359980,16360143,164,54,0.0721409502247902,0.0202443181188841,0.0518966321059061,242.85618769961,"CHH","Os09g0441250","promoter","Os09g0441250","Conserved hypothetical protein && sp|A0A1D6F9Y9|C92C6_MAIZE Trimethyltridecatetraene synthase OS=Zea mays OX=4577 GN=CYP92C6 PE=1 SV=1 && -"]
[9,16361199,16361287,89,27,0.131430087849895,0.0454810608140384,0.0859490270358564,141.441333288116,"CHH","9:16355744:16363176","CGI"]
[9,16361199,16361287,89,27,0.131430087849895,0.0454810608140384,0.0859490270358564,141.441333288116,"CHH","Os09g0441250","promoter","Os09g0441250","Conserved hypothetical protein && sp|A0A1D6F9Y9|C92C6_MAIZE Trimethyltridecatetraene synthase OS=Zea mays OX=4577 GN=CYP92C6 PE=1 SV=1 && -"]
[9,16416613,16416784,172,54,0.161289311736293,0.0769769156690549,0.0843123960672377,288.565948348951,"CHH","9:16415594:16417595","CGI_shore"]
[9,16416613,16416784,172,54,0.161289311736293,0.0769769156690549,0.0843123960672377,288.565948348951,"CHH","9:16416140:16418141","CGI_shore"]
[9,16416613,16416784,172,54,0.161289311736293,0.0769769156690549,0.0843123960672377,288.565948348951,"CHH","9:16416208:16418208","CGI_shore"]
[9,16531368,16531626,259,27,0.235836081004188,0.0210804197893684,0.214755661214819,159.212399548866,"CHH","Os09g0444100","intron","Os09g0444100","Similar to Minus dominance protein && - && PF02042:RWP-RK domain"]
[9,16545840,16546014,175,53,0.31502650905524,0.185827767770366,0.129198741284874,280.793966567682,"CHH","Os09g0444200","intron","Os09g0444200","Lecithin:cholesterol acyltransferase family protein && sp|Q9FNA9|PDAT1_ARATH Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=PDAT1 PE=2 SV=1 && -"]
[9,16619558,16619643,86,20,0.495538980093973,0.330815075582828,0.164723904511145,107.842470740101,"CHH","9:16618765:16620765","CGI_shore"]
[9,16619558,16619643,86,20,0.495538980093973,0.330815075582828,0.164723904511145,107.842470740101,"CHH","9:16619087:16621088","CGI_shore"]
[9,16624785,16624844,60,10,0.829852599432585,0.328009756571879,0.501842842860706,50.2860764332366,"CG","9:16622003:16628354","CGI"]
[9,16694052,16694239,188,61,0.182941615299906,0.0722326062278281,0.110709009072078,296.959211895789,"CHH","9:16692300:16694301","CGI_shore"]
[9,16694052,16694239,188,61,0.182941615299906,0.0722326062278281,0.110709009072078,296.959211895789,"CHH","9:16692391:16694391","CGI_shore"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16695598:16697599","CGI_shore"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16695814:16697814","CGI_shore"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16696408:16697099","CGI"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16694407:16696407","CGI_shore"]
[9,16708149,16708341,193,54,0.167541986083268,0.0685550829724439,0.098986903110824,285.118162025614,"CHH","9:16707836:16709837","CGI_shore"]
[9,16762103,16762167,65,27,0.0921371443801461,0.0109434439014533,0.0811937004786928,150.004515709424,"CHH","9:16761663:16763663","CGI_shore"]
[9,16805621,16805688,68,27,0.200820007689291,0.0978691066408885,0.102950901048403,138.532764477759,"CHH","9:16799422:16806663","CGI"]
[9,16812512,16812664,153,28,0.439892494959261,0.14698655354707,0.292905941412191,143.591166498297,"CHH","9:16810742:16812742","CGI_shore"]
[9,16833291,16833454,164,52,0.182103239389632,0.0341127072287118,0.14799053216092,273.677947392637,"CHH","Os09g0449600","promoter","F-box protein 490","Similar to F-box protein interaction domain containing protein, expressed && sp|Q9SU30|CPR1_ARATH F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 && PF07734:F-box associated|PF00646:F-box domain"]
[9,16833291,16833454,164,52,0.182103239389632,0.0341127072287118,0.14799053216092,273.677947392637,"CHH","9:16833168:16833521","CGI"]
[9,16844137,16844236,100,28,0.106106001908542,0.0165252420417209,0.0895807598668214,125.765034464068,"CHH","9:16843961:16845961","CGI_shore"]
[9,16844137,16844236,100,28,0.106106001908542,0.0165252420417209,0.0895807598668214,125.765034464068,"CHH","9:16842642:16844642","CGI_shore"]
[9,16862405,16862577,173,43,0.149402711400097,0.320903898450156,-0.171501187050059,-288.057421021813,"CHH","Os09g0450300","promoter","Os09g0450300","MAP65/ASE1 family protein && sp|Q9SIS3|MA656_ARATH 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana OX=3702 GN=MAP65-6 PE=1 SV=1 && PF03999:Microtubule associated protein (MAP65/ASE1 family)"]
[9,16868638,16868824,187,55,0.104579263647926,0.0319491469655536,0.0726301166823727,248.80802562686,"CHH","9:16867733:16869733","CGI_shore"]
[9,16872024,16872248,225,79,0.25044872620058,0.14296220501789,0.10748652118269,421.952312569714,"CHH","9:16870027:16872028","CGI_shore"]
[9,16879010,16879215,206,68,0.110148738556991,0.0168071504892314,0.0933415880677597,324.640499281534,"CHH","9:16878622:16894816","CGI"]
[9,16956142,16956220,79,23,0.148901604164296,0.0565033045911586,0.0923982995731371,104.813341868888,"CHH","9:16953616:16963867","CGI"]
[9,16962155,16962349,195,36,0.558442514313545,0.271647515388487,0.286794998925059,189.817957091799,"CHH","Os09g0452300","promoter","Os09g0452300","Similar to cDNA, clone: J065054A13, full insert sequence && sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana OX=3702 GN=At1g05030 PE=2 SV=2 && -"]
[9,16962155,16962349,195,36,0.558442514313545,0.271647515388487,0.286794998925059,189.817957091799,"CHH","9:16953616:16963867","CGI"]
[9,17002388,17002457,70,15,0.282128145599172,0.145072701896338,0.137055443702834,88.6182042547792,"CHH","Os09g0453300","promoter","ANNEXIN 10","Annexin family protein && sp|P13214|ANXA4_BOVIN Annexin A4 OS=Bos taurus OX=9913 GN=ANXA4 PE=1 SV=2 && PF00191:Annexin"]
[9,17002388,17002457,70,15,0.282128145599172,0.145072701896338,0.137055443702834,88.6182042547792,"CHH","9:17002376:17004377","CGI_shore"]
[9,17025393,17025451,59,7,0.0802774130204726,0.301322124726063,-0.22104471170559,-25.8966141040676,"CG","9:17024878:17026879","CGI_shore"]
[9,17025393,17025451,59,7,0.0802774130204726,0.301322124726063,-0.22104471170559,-25.8966141040676,"CG","Os09g0453800","intron","Aminotransferase OsIDI4, Fe-deficiency-induced protein 4","1-aminocyclopropane-1-carboxylate synthase family protein && sp|P9WPZ4|DAPC_MYCTO Probable N-succinyldiaminopimelate aminotransferase DapC OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=dapC PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[9,17176145,17176262,118,31,0.110287053461568,0.0291992605523581,0.0810877929092103,148.16017562124,"CHH","9:17174882:17176883","CGI_shore"]
[9,17189752,17189957,206,74,0.157127984947455,0.0419301736615432,0.115197811285911,297.14659334536,"CG","Os09g0456200","promoter","b-ZIP TRANSCRIPTION FACTOR 72","Similar to BZIP transcription factor ABI5 && sp|Q6ZDF3|TRAB1_ORYSJ bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRAB1 PE=1 SV=2 && PF00170:bZIP transcription factor"]
[9,17189752,17189957,206,74,0.157127984947455,0.0419301736615432,0.115197811285911,297.14659334536,"CG","9:17189750:17191112","CGI"]
[9,17256660,17257181,522,38,0.162260984886893,0.0519514326072905,0.110309552279602,189.65964872082,"CHH","Os09g0457100","promoter","ABA-8'-HYDROXYLASE 3","Cytochrome P450 family protein && sp|Q0J185|ABAH3_ORYSJ Abscisic acid 8'-hydroxylase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYP707A7 PE=2 SV=1 && PF00067:Cytochrome P450"]
[9,17345272,17345388,117,37,0.0729594191686885,0.175708550720352,-0.102749131551663,-188.183198097141,"CHH","9:17343483:17345483","CGI_shore"]
[9,17345272,17345388,117,37,0.0729594191686885,0.175708550720352,-0.102749131551663,-188.183198097141,"CHH","9:17343750:17345751","CGI_shore"]
[9,17345272,17345388,117,37,0.0729594191686885,0.175708550720352,-0.102749131551663,-188.183198097141,"CHH","9:17345267:17347267","CGI_shore"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17355095:17357095","CGI_shore"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17355269:17357270","CGI_shore"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17356234:17358235","CGI_shore"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17357096:17357453","CGI"]
[9,17361821,17361961,141,33,0.251699241511574,0.0894311075803309,0.162268133931243,202.540731404488,"CHH","9:17360324:17362325","CGI_shore"]
[9,17456825,17456979,155,39,0.259671611600925,0.0830047702281954,0.17666684137273,225.464422163016,"CHH","9:17444563:17473286","CGI"]
[9,17457717,17458019,303,62,0.238339298517367,0.0768058211436041,0.161533477373763,292.239954400312,"CHH","Os09g0461700","promoter","Os09g0461700","Alpha/beta hydrolase fold-3 domain containing protein && sp|I4DST8|TCEA1_TULGE Tuliposide A-converting enzyme 1, chloroplastic OS=Tulipa gesneriana OX=13306 GN=TCEA1 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17457717,17458019,303,62,0.238339298517367,0.0768058211436041,0.161533477373763,292.239954400312,"CHH","9:17444563:17473286","CGI"]
[9,17466588,17466786,199,76,0.19965008330204,0.102657724404141,0.0969923588978991,397.812775261816,"CHH","9:17444563:17473286","CGI"]
[9,17466588,17466786,199,76,0.19965008330204,0.102657724404141,0.0969923588978991,397.812775261816,"CHH","Os09g0462100","promoter","Os09g0462100","Alpha/beta hydrolase fold-3 domain containing protein && sp|Q9SMM9|CXE13_ARATH Probable carboxylesterase 13 OS=Arabidopsis thaliana OX=3702 GN=CXE13 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17469585,17469671,87,7,0.0721626666195447,0.217929801721668,-0.145767135102123,-28.8572392417036,"CHG","Os09g0462000","promoter","Os09g0462000","Hypothetical protein && sp|Q9SMM9|CXE13_ARATH Probable carboxylesterase 13 OS=Arabidopsis thaliana OX=3702 GN=CXE13 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17469585,17469671,87,7,0.0721626666195447,0.217929801721668,-0.145767135102123,-28.8572392417036,"CHG","9:17444563:17473286","CGI"]
[9,17469629,17469729,101,11,0.208969199117787,0.581411971700958,-0.372442772583172,-72.4309138108928,"CG","Os09g0462000","promoter","Os09g0462000","Hypothetical protein && sp|Q9SMM9|CXE13_ARATH Probable carboxylesterase 13 OS=Arabidopsis thaliana OX=3702 GN=CXE13 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17469629,17469729,101,11,0.208969199117787,0.581411971700958,-0.372442772583172,-72.4309138108928,"CG","9:17444563:17473286","CGI"]
[9,17559660,17559770,111,34,0.0115111741411103,0.0643931870125168,-0.0528820128714066,-158.886211111699,"CHH","9:17557838:17559839","CGI_shore"]
[9,17614649,17614762,114,23,0.213375302310613,0.0348798710550939,0.178495431255519,126.248466265933,"CHH","9:17612726:17623240","CGI"]
[9,17706769,17706869,101,18,0.0700033266410158,0.0089296012973173,0.0610737253436985,84.3277157348423,"CHH","9:17705201:17707202","CGI_shore"]
[9,17706769,17706869,101,18,0.0700033266410158,0.0089296012973173,0.0610737253436985,84.3277157348423,"CHH","Os09g0466400","promoter","zinc finger homeodomain class homeobox transcription factor 1","Zinc finger homeodomain (ZF-HD) class homeobox transcription factor, Rice morphogenesis, Modulation of leaf rollin && sp|Q6YXH5|ZHD1_ORYSJ Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZHD1 PE=2 SV=1 && PF04770:ZF-HD protein dimerisation region"]
[9,17706769,17706869,101,18,0.0700033266410158,0.0089296012973173,0.0610737253436985,84.3277157348423,"CHH","9:17705528:17707528","CGI_shore"]
[9,17718822,17718897,76,34,0.164509030347739,0.0551485516719897,0.10936047867575,188.393263830983,"CHH","9:17716865:17718865","CGI_shore"]
[9,17718822,17718897,76,34,0.164509030347739,0.0551485516719897,0.10936047867575,188.393263830983,"CHH","9:17716965:17718966","CGI_shore"]
[9,17718822,17718897,76,34,0.164509030347739,0.0551485516719897,0.10936047867575,188.393263830983,"CHH","9:17718866:17719815","CGI"]
[9,17768163,17768258,96,20,0.126242720673438,0.0476794662315489,0.0785632544418889,96.7520154739076,"CHH","Os09g0467400","intron","PURINE PERMEASE 3","Similar to ATPUP3 && sp|Q9FZ95|PUP3_ARATH Purine permease 3 OS=Arabidopsis thaliana OX=3702 GN=PUP3 PE=2 SV=1 && PF16913:Purine nucleobase transmembrane transport"]
[9,17768163,17768258,96,20,0.126242720673438,0.0476794662315489,0.0785632544418889,96.7520154739076,"CHH","9:17761685:17816220","CGI"]
[9,17913474,17913646,173,49,0.460294848560268,0.285723578291811,0.174571270268457,267.505971483568,"CHH","9:17910755:17914535","CGI"]
[9,17917491,17917559,69,21,0.0991747886033221,0.0279526416861953,0.0712221469171269,94.4086556313863,"CHH","Os09g0470900","promoter","Os09g0470900","Uncharacterised conserved protein UCP013022 domain containing protein && sp|Q8N9R8|SCAI_HUMAN Protein SCAI OS=Homo sapiens OX=9606 GN=SCAI PE=1 SV=2 && PF12070:Protein SCAI"]
[9,17917491,17917559,69,21,0.0991747886033221,0.0279526416861953,0.0712221469171269,94.4086556313863,"CHH","9:17916854:17918854","CGI_shore"]
[9,17917491,17917559,69,21,0.0991747886033221,0.0279526416861953,0.0712221469171269,94.4086556313863,"CHH","9:17916967:17918968","CGI_shore"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","9:17927893:17936120","CGI"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471000","exon","Os09g0471000","Similar to cupin, RmlC-type && sp|Q9LXG9|PCO1_ARATH Plant cysteine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PCO1 PE=1 SV=1 && -"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471000","utr3","Os09g0471000","Similar to cupin, RmlC-type && sp|Q9LXG9|PCO1_ARATH Plant cysteine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PCO1 PE=1 SV=1 && -"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471150","promoter","Os09g0471150","Hypothetical gene && sp|Q9SJZ2|PER17_ARATH Peroxidase 17 OS=Arabidopsis thaliana OX=3702 GN=PER17 PE=2 SV=1 && PF00141:Peroxidase"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471000","intron","Os09g0471000","Similar to cupin, RmlC-type && sp|Q9LXG9|PCO1_ARATH Plant cysteine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PCO1 PE=1 SV=1 && -"]
[9,18007325,18007520,196,37,0.13774426723676,0.0398849342852573,0.0978593329515029,180.817361212714,"CHH","Os09g0471800","intron","WALL-ASSOCIATED KINASE GENE 85","Similar to WAK80 - OsWAK receptor-like protein kinase && sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 && -"]
[9,18007325,18007520,196,37,0.13774426723676,0.0398849342852573,0.0978593329515029,180.817361212714,"CHH","9:18005549:18007549","CGI_shore"]
[9,18011449,18011506,58,16,0.27977094703211,0.160088444496402,0.119682502535708,72.3409819271195,"CHH","9:18010606:18012607","CGI_shore"]
[9,18011449,18011506,58,16,0.27977094703211,0.160088444496402,0.119682502535708,72.3409819271195,"CHH","9:18011135:18013135","CGI_shore"]
[9,18011449,18011506,58,16,0.27977094703211,0.160088444496402,0.119682502535708,72.3409819271195,"CHH","Os09g0471900","promoter","Os09g0471900","Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein && sp|Q1HFZ0|NSUN2_MOUSE RNA cytosine C(5)-methyltransferase NSUN2 OS=Mus musculus OX=10090 GN=Nsun2 PE=1 SV=2 && PF01189:16S rRNA methyltransferase RsmB/F"]
[9,18065444,18065635,192,60,0.203833150131393,0.0677845632844827,0.13604858684691,387.585296515267,"CHH","9:18064679:18066679","CGI_shore"]
[9,18065444,18065635,192,60,0.203833150131393,0.0677845632844827,0.13604858684691,387.585296515267,"CHH","9:18065104:18067105","CGI_shore"]
[9,18065444,18065635,192,60,0.203833150131393,0.0677845632844827,0.13604858684691,387.585296515267,"CHH","Os09g0472900","promoter","Os09g0472900","Similar to Blight-associated protein p12 precursor && sp|Q9ZP41|EGC_CITJA EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1 && PF03330:Lytic transglycolase"]
[9,18092939,18093083,145,49,0.162954824342144,0.0797584114511094,0.083196412891035,209.003690518016,"CHH","9:18092186:18094187","CGI_shore"]
[9,18092939,18093083,145,49,0.162954824342144,0.0797584114511094,0.083196412891035,209.003690518016,"CHH","Os09g0473502","promoter","Os09g0473502","Hypothetical gene && sp|B6TTV8|WTF1_MAIZE Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1 && PF11955:Plant organelle RNA recognition domain"]
[9,18092939,18093083,145,49,0.162954824342144,0.0797584114511094,0.083196412891035,209.003690518016,"CHH","9:18093076:18095076","CGI_shore"]
[9,18129561,18129612,52,18,0.107120459995514,0.0445016817591234,0.0626187782363901,89.8761438530182,"CHH","9:18128288:18130288","CGI_shore"]
[9,18161660,18161763,104,20,0.0221434851023597,0.208214385137791,-0.186070900035432,-105.704888886261,"CHH","9:18160510:18162510","CGI_shore"]
[9,18161660,18161763,104,20,0.0221434851023597,0.208214385137791,-0.186070900035432,-105.704888886261,"CHH","9:18161230:18163231","CGI_shore"]
[9,18206876,18207010,135,34,0.28778153063753,0.118561059496284,0.169220471141246,183.194189415226,"CHH","Os09g0475400","promoter","basic helix-loop-helix protein 032","Helix-loop-helix DNA-binding domain containing protein && sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1 && -"]
[9,18206876,18207010,135,34,0.28778153063753,0.118561059496284,0.169220471141246,183.194189415226,"CHH","9:18200228:18210389","CGI"]
[9,18221793,18221905,113,33,0.133213217626467,0.038642538252509,0.0945706793739581,175.808299136188,"CHH","Os09g0475500","promoter","Os09g0475500","Protein of unknown function DUF246, plant family protein && sp|Q4V398|RRT1_ARATH Rhamnogalacturonan I rhamnosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RRT1 PE=1 SV=1 && -"]
[9,18221793,18221905,113,33,0.133213217626467,0.038642538252509,0.0945706793739581,175.808299136188,"CHH","9:18221183:18223184","CGI_shore"]
[9,18221793,18221905,113,33,0.133213217626467,0.038642538252509,0.0945706793739581,175.808299136188,"CHH","9:18221251:18223251","CGI_shore"]
[9,18225275,18225388,114,6,0.439305660748408,0.768149159544916,-0.328843498796508,-33.6820422030546,"CG","9:18223627:18225628","CGI_shore"]
[9,18225275,18225388,114,6,0.439305660748408,0.768149159544916,-0.328843498796508,-33.6820422030546,"CG","Os09g0475700","utr3","Prolyl Oligopeptidase 19, PROLYL OLIGOPEPTIDASE 19","Peptidase S9A, prolyl oligopeptidase family protein && sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata OX=477 GN=ptrB PE=3 SV=1 && PF02897:Prolyl oligopeptidase, N-terminal beta-propeller domain|PF00326:Prolyl oligopeptidase family"]
[9,18225275,18225388,114,6,0.439305660748408,0.768149159544916,-0.328843498796508,-33.6820422030546,"CG","Os09g0475700","exon","Prolyl Oligopeptidase 19, PROLYL OLIGOPEPTIDASE 19","Peptidase S9A, prolyl oligopeptidase family protein && sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata OX=477 GN=ptrB PE=3 SV=1 && PF02897:Prolyl oligopeptidase, N-terminal beta-propeller domain|PF00326:Prolyl oligopeptidase family"]
[9,18257257,18257461,205,43,0.22032503334204,0.0767063221602008,0.143618711181839,223.155263212171,"CHH","Os09g0476800","promoter","FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10","FAS1 domain domain containing protein && sp|Q9FM65|FLA1_ARATH Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 && PF02469:Fasciclin domain"]
[9,18257257,18257461,205,43,0.22032503334204,0.0767063221602008,0.143618711181839,223.155263212171,"CHH","9:18247320:18260849","CGI"]
[9,18436634,18436820,187,50,0.342234961285753,0.19527414266732,0.146960818618433,314.077276715647,"CHH","9:18436226:18438227","CGI_shore"]
[9,18436634,18436820,187,50,0.342234961285753,0.19527414266732,0.146960818618433,314.077276715647,"CHH","9:18436464:18438464","CGI_shore"]
[9,18585107,18585416,310,71,0.227881871468946,0.0896361786065614,0.138245692862385,389.77771528575,"CHH","9:18585083:18587083","CGI_shore"]
[9,18689135,18689326,192,56,0.138701039427122,0.0408247566981967,0.0978762827289255,313.840817349814,"CHH","Os09g0484300","intron","Os09g0484300","Similar to Polyubiquitin-like protein && sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 && PF00632:HECT-domain (ubiquitin-transferase)"]
[9,18722398,18722617,220,63,0.356083023468682,0.200873903850257,0.155209119618425,308.815012773574,"CHH","9:18713637:18726122","CGI"]
[9,18728797,18728930,134,39,0.18535085057329,0.0314373351844888,0.153913515388802,239.496696310273,"CHH","9:18728313:18730313","CGI_shore"]
[9,18729954,18730101,148,36,0.421807872786608,0.217799259194738,0.20400861359187,223.46710034426,"CHH","9:18728313:18730313","CGI_shore"]
[9,18828134,18828252,119,41,0.122109216268451,0.0252508944017543,0.0968583218666969,186.031551320399,"CHH","9:18825776:18832368","CGI"]
[9,18828134,18828252,119,41,0.122109216268451,0.0252508944017543,0.0968583218666969,186.031551320399,"CHH","Os09g0488000","promoter","GLUCOSAMINE-6-P ACETYLTRANSFERASE 1","Acyl-CoA N-acyltransferase domain containing protein && sp|Q5U9F2|GNA1_ORYSJ Glucosamine 6-phosphate N-acetyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GNA1 PE=1 SV=1 && PF00583:Acetyltransferase (GNAT) family"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","Os09g0489200","promoter","Jumonji 712","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q8RWR1|JMJ30_ARATH Lysine-specific demethylase JMJ30 OS=Arabidopsis thaliana OX=3702 GN=JMJ30 PE=1 SV=1 && PF13621:Cupin-like domain"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","9:18867586:18869587","CGI_shore"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","9:18868971:18870972","CGI_shore"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","Os09g0489500","intron","b-ZIP TRANSCRIPTION FACTOR 74","bZIP transcription factor, Tapetum developmen && sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10 OS=Nicotiana tabacum OX=4097 GN=TGA10 PE=1 SV=1 && PF14144:Seed dormancy control|PF00170:bZIP transcription factor"]
[9,18920501,18920665,165,47,0.0348504833547944,0.18966014179665,-0.154809658441855,-264.193227807285,"CHH","9:18918866:18920867","CGI_shore"]
[9,18920501,18920665,165,47,0.0348504833547944,0.18966014179665,-0.154809658441855,-264.193227807285,"CHH","9:18919317:18921317","CGI_shore"]
[9,18920501,18920665,165,47,0.0348504833547944,0.18966014179665,-0.154809658441855,-264.193227807285,"CHH","Os09g0491532","intron","RICE SQUAMOSA PROMOTER-BINDING-LIKE 17","Similar to Squamosa-promoter binding protein 2 && sp|A3C057|SPL17_ORYSJ Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL17 PE=2 SV=2 && PF03110:SBP domain"]
[9,18977203,18977266,64,13,0.168095000928582,0.403741457132185,-0.235646456203603,-56.9427566458428,"CG","9:18975994:18977995","CGI_shore"]
[9,18977203,18977266,64,13,0.168095000928582,0.403741457132185,-0.235646456203603,-56.9427566458428,"CG","9:18976420:18978626","CGI"]
[9,19089508,19089710,203,54,0.240880178068314,0.107443656364904,0.133436521703409,309.14943388436,"CHH","9:19089175:19091176","CGI_shore"]
[9,19138830,19139093,264,80,0.110231661114046,0.0411595711211312,0.0690720899929147,366.755340537481,"CHH","9:19138070:19140070","CGI_shore"]
[9,19217639,19217728,90,6,0.532719280368088,0.851987694833513,-0.319268414465425,-36.0037751054814,"CG","9:19216409:19218410","CGI_shore"]
[9,19217639,19217728,90,6,0.532719280368088,0.851987694833513,-0.319268414465425,-36.0037751054814,"CG","Os09g0497000","exon","Os09g0497000","Adenine nucleotide translocator 1 domain containing protein && sp|Q9LJX5|BRTL1_ARATH Probable mitochondrial adenine nucleotide transporter BTL1 OS=Arabidopsis thaliana OX=3702 GN=At3g20240 PE=2 SV=1 && PF00153:Mitochondrial carrier protein"]
[9,19217639,19217728,90,6,0.532719280368088,0.851987694833513,-0.319268414465425,-36.0037751054814,"CG","Os09g0497000","intron","Os09g0497000","Adenine nucleotide translocator 1 domain containing protein && sp|Q9LJX5|BRTL1_ARATH Probable mitochondrial adenine nucleotide transporter BTL1 OS=Arabidopsis thaliana OX=3702 GN=At3g20240 PE=2 SV=1 && PF00153:Mitochondrial carrier protein"]
[9,19392223,19392420,198,62,0.0704513547680917,0.0388590906643879,0.0315922641037037,243.017969845645,"CHH","9:19386330:19399243","CGI"]
[9,19519644,19519734,91,26,0.139549689707962,0.0506856735340091,0.0888640161739529,127.493870633814,"CG","Os09g0505000","exon","Os09g0505000","Zinc finger, RING/FYVE/PHD-type domain containing protein && - && PF13920:Zinc finger, C3HC4 type (RING finger)"]
[9,19519644,19519734,91,26,0.139549689707962,0.0506856735340091,0.0888640161739529,127.493870633814,"CG","9:19519347:19521187","CGI"]
[9,19567610,19567672,63,12,0.190557964529957,0.0646188366068321,0.125939127923125,53.3551271386064,"CHG","9:19566435:19568436","CGI_shore"]
[9,19567610,19567672,63,12,0.190557964529957,0.0646188366068321,0.125939127923125,53.3551271386064,"CHG","Os09g0505700","intron","Os09g0505700","Aldolase-type TIM barrel domain containing protein && sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0505700 PE=1 SV=1 && PF00834:Ribulose-phosphate 3 epimerase family"]
[9,19575982,19576239,258,50,0.178067794155613,0.0743410369337137,0.1037267572219,244.347014649491,"CHH","9:19574523:19576523","CGI_shore"]
[9,19575982,19576239,258,50,0.178067794155613,0.0743410369337137,0.1037267572219,244.347014649491,"CHH","Os09g0505850","promoter","Os09g0505850","Hypothetical protein && sp|Q9FKS0|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=UKL1 PE=1 SV=1 && -"]
[9,19575982,19576239,258,50,0.178067794155613,0.0743410369337137,0.1037267572219,244.347014649491,"CHH","Os09g0505900","promoter","PURPLE ACID PHOSPHATASE 27C","Similar to ATPAP27/PAP27 && sp|Q5MAU8|PPA27_ARATH Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana OX=3702 GN=PAP27 PE=2 SV=1 && PF16656:Purple acid Phosphatase, N-terminal domain|PF00149:Calcineurin-like phosphoesterase|PF17808:Fn3-like domain from Purple Acid Phosphatase"]
[9,19672394,19672621,228,15,0.0856790563171492,0.628732915033158,-0.543053858716009,-132.202424996349,"CG","Os09g0507400","exon","Os09g0507400","Conserved hypothetical protein && - && -"]
[9,19672394,19672621,228,15,0.0856790563171492,0.628732915033158,-0.543053858716009,-132.202424996349,"CG","9:19671835:19673836","CGI_shore"]
[9,19672394,19672621,228,15,0.0856790563171492,0.628732915033158,-0.543053858716009,-132.202424996349,"CG","Os09g0507400","utr3","Os09g0507400","Conserved hypothetical protein && - && -"]
[9,19769367,19769421,55,14,0.0683455779285857,0.0100658412700497,0.0582797366585359,70.3041764690193,"CHH","Os09g0509400","promoter","Os09g0509400","Conserved hypothetical protein && sp|Q5RBA3|F214B_PONAB Protein FAM214B OS=Pongo abelii OX=9601 GN=FAM214B PE=2 SV=1 && PF13889:Chromosome segregation during meiosis"]
[9,19769367,19769421,55,14,0.0683455779285857,0.0100658412700497,0.0582797366585359,70.3041764690193,"CHH","9:19767814:19769814","CGI_shore"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","9:19794090:19796090","CGI_shore"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","Os09g0510000","promoter","Os09g0510000","Hypothetical protein && - && -"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","9:19795421:19795700","CGI"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","9:19795700:19797701","CGI_shore"]
[9,19871486,19871695,210,55,0.170100250919005,0.0261408598336866,0.143959391085318,328.021539551393,"CHH","9:19870060:19872061","CGI_shore"]
[9,19922565,19922730,166,58,0.22382576172663,0.0561140023800489,0.167711759346581,261.962767050995,"CG","Os09g0512200","promoter","Os09g0512200","AMP-dependent synthetase/ligase domain containing protein && sp|Q8W471|AAE15_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=AAE15 PE=1 SV=1 && -"]
[9,19922565,19922730,166,58,0.22382576172663,0.0561140023800489,0.167711759346581,261.962767050995,"CG","9:19921549:19923550","CGI_shore"]
[9,19922565,19922730,166,58,0.22382576172663,0.0561140023800489,0.167711759346581,261.962767050995,"CG","9:19922139:19923174","CGI"]
[9,20040223,20040276,54,14,0.115878110331136,0.0419732744254593,0.0739048359056768,62.8972336968251,"CG","Os09g0514600","exon","Os09g0514600","Beta-grasp fold, ferredoxin-type domain containing protein && sp|Q05B51|FDX2_BOVIN Ferredoxin-2, mitochondrial OS=Bos taurus OX=9913 GN=FDX2 PE=2 SV=1 && -"]
[9,20040223,20040276,54,14,0.115878110331136,0.0419732744254593,0.0739048359056768,62.8972336968251,"CG","9:20039788:20040361","CGI"]
[9,20254172,20254360,189,17,0.521551586741109,0.745285987948936,-0.223734401207827,-85.0501767977731,"CG","9:20252558:20254559","CGI_shore"]
[9,20254172,20254360,189,17,0.521551586741109,0.745285987948936,-0.223734401207827,-85.0501767977731,"CG","Os09g0518800","exon","Os09g0518800","Conserved hypothetical protein && - && -"]
[9,20254172,20254360,189,17,0.521551586741109,0.745285987948936,-0.223734401207827,-85.0501767977731,"CG","Os09g0518800","utr3","Os09g0518800","Conserved hypothetical protein && - && -"]
[9,20257693,20257798,106,6,0.103577647876485,0.28789674448251,-0.184319096606025,-25.6397822570083,"CHG","Os09g0519000","promoter","Os09g0519000","Hypothetical protein && - && PF13578:Methyltransferase domain"]
[9,20257693,20257798,106,6,0.103577647876485,0.28789674448251,-0.184319096606025,-25.6397822570083,"CHG","9:20256816:20258816","CGI_shore"]
[9,20304930,20305068,139,40,0.400670918129468,0.244136819109729,0.156534099019739,222.336294256497,"CHH","Os09g0520000","promoter","Os09g0520000","Hypothetical protein && - && -"]
[9,20304930,20305068,139,40,0.400670918129468,0.244136819109729,0.156534099019739,222.336294256497,"CHH","9:20303872:20305872","CGI_shore"]
[9,20305177,20305401,225,60,0.195325588131306,0.0405696434947352,0.154755944636571,389.63677784576,"CHH","Os09g0520000","promoter","Os09g0520000","Hypothetical protein && - && -"]
[9,20305177,20305401,225,60,0.195325588131306,0.0405696434947352,0.154755944636571,389.63677784576,"CHH","9:20303872:20305872","CGI_shore"]
[9,20326632,20326810,179,71,0.0945821044153966,0.0257078109544715,0.0688742934609252,332.021107071106,"CHH","9:20325511:20327511","CGI_shore"]
[9,20326632,20326810,179,71,0.0945821044153966,0.0257078109544715,0.0688742934609252,332.021107071106,"CHH","Os09g0520400","exon","b-ZIP TRANSCRIPTION FACTOR 76","Hypothetical conserved gene && sp|Q8H1F0|BZP29_ARATH bZIP transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=BZIP29 PE=2 SV=1 && PF07716:Basic region leucine zipper"]
[9,20326632,20326810,179,71,0.0945821044153966,0.0257078109544715,0.0688742934609252,332.021107071106,"CHH","9:20326623:20326882","CGI"]
[9,20347055,20347141,87,23,0.00644896878853385,0.0756323785067133,-0.0691834097181795,-133.005301863394,"CHH","Os09g0520700","exon","RNA helicase 7","Similar to RNA helicase && sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1 && PF08152:GUCT (NUC152) domain|PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain"]
[9,20347055,20347141,87,23,0.00644896878853385,0.0756323785067133,-0.0691834097181795,-133.005301863394,"CHH","Os09g0520700","utr3","RNA helicase 7","Similar to RNA helicase && sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1 && PF08152:GUCT (NUC152) domain|PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain"]
[9,20400963,20401128,166,33,0.3768231147461,0.153888149822532,0.222934964923569,213.542322939553,"CHH","Os09g0522100","promoter","ETHYLENE RESPONSE FACTOR 133","Similar to Dehydration-responsive element-binding protein 1H && sp|A2Z388|DRE1H_ORYSI Dehydration-responsive element-binding protein 1H OS=Oryza sativa subsp. indica OX=39946 GN=DREB1H PE=2 SV=1 && PF00847:AP2 domain"]
[9,20409627,20409723,97,5,0.148978462977329,0.680216524895492,-0.531238061918164,-25.3912824520584,"CHG","9:20408118:20410118","CGI_shore"]
[9,20409627,20409723,97,5,0.148978462977329,0.680216524895492,-0.531238061918164,-25.3912824520584,"CHG","9:20409436:20411437","CGI_shore"]
[9,20438763,20438814,52,19,0.142557243543915,0.00394980513581601,0.138607438408099,166.41221141442,"CHH","9:20437668:20439668","CGI_shore"]
[9,20483120,20483235,116,37,0.13532510411982,0.0441046933097462,0.0912204108100741,189.618854842084,"CHH","9:20482698:20484698","CGI_shore"]
[9,20483120,20483235,116,37,0.13532510411982,0.0441046933097462,0.0912204108100741,189.618854842084,"CHH","Os09g0524500","promoter","Os09g0524500","Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed && - && -"]
[9,20493858,20494039,182,42,0.367984736007604,0.228451465312752,0.139533270694852,190.565840117725,"CHH","9:20484699:20497026","CGI"]
[9,20504782,20505101,320,102,0.181237154877363,0.0484461543463843,0.132791000530979,676.333527968223,"CHH","9:20503351:20505352","CGI_shore"]
[9,20509203,20509392,190,50,0.26640635238229,0.1476341365666,0.118772215815691,264.37392855609,"CHH","9:20507571:20509571","CGI_shore"]
[9,20553691,20553855,165,37,0.229592425737757,0.12101877227084,0.108573653466917,176.836075349329,"CHH","9:20552557:20555516","CGI"]
[9,20553691,20553855,165,37,0.229592425737757,0.12101877227084,0.108573653466917,176.836075349329,"CHH","Os09g0525900","promoter","Rhomboid 16, RHOMBOID 16","Peptidase S54, rhomboid domain containing protein && sp|F4JBM4|RBL4_ARATH RHOMBOID-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RBL4 PE=2 SV=1 && PF01694:Rhomboid family"]
[9,20609922,20610202,281,95,0.396045432813181,0.242497527461441,0.15354790535174,536.322506292114,"CHH","9:20608330:20610686","CGI"]
[9,20609922,20610202,281,95,0.396045432813181,0.242497527461441,0.15354790535174,536.322506292114,"CHH","Os09g0526800","promoter","Os09g0526800","NC domain containing protein && sp|Q93V51|PSE1_ARATH Protein LEAD-SENSITIVE 1 OS=Arabidopsis thaliana OX=3702 GN=PSE1 PE=2 SV=1 && -"]
[9,20704796,20704989,194,64,0.218917628832821,0.0825644940399335,0.136353134792888,373.862285682659,"CHH","9:20704292:20706292","CGI_shore"]
[9,20712977,20713070,94,24,0.0183182497925002,0.0792271316426366,-0.0609088818501364,-109.736868288644,"CHH","9:20711555:20713555","CGI_shore"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","Os09g0530300","exon","Os09g0530300","Cytochrome P450 family protein && sp|O81970|C71A9_SOYBN Cytochrome P450 71A9 OS=Glycine max OX=3847 GN=CYP71A9 PE=2 SV=1 && PF00067:Cytochrome P450"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","Os09g0530350","promoter","Os09g0530350","Hypothetical protein && sp|P24465|C71A1_PERAE Cytochrome P450 71A1 OS=Persea americana OX=3435 GN=CYP71A1 PE=1 SV=2 && PF00067:Cytochrome P450"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","Os09g0530300","utr3","Os09g0530300","Cytochrome P450 family protein && sp|O81970|C71A9_SOYBN Cytochrome P450 71A9 OS=Glycine max OX=3847 GN=CYP71A9 PE=2 SV=1 && PF00067:Cytochrome P450"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","9:20774337:20778402","CGI"]
[9,20792529,20792642,114,23,0.00879019489493484,0.0978243274060073,-0.0890341325110725,-132.275481312033,"CHH","Os09g0530800","promoter","Subtilisin 59, SUBTILISIN 59","Similar to predicted protein && sp|Q8L7I2|SBT36_ARATH Subtilisin-like protease SBT3.6 OS=Arabidopsis thaliana OX=3702 GN=SBT3.6 PE=2 SV=1 && -"]
[9,20801745,20801871,127,37,0.220297869679292,0.125133208817448,0.0951646608618439,165.557083324091,"CHH","9:20800565:20802565","CGI_shore"]
[9,20801745,20801871,127,37,0.220297869679292,0.125133208817448,0.0951646608618439,165.557083324091,"CHH","Os09g0531100","intron","Os09g0531100","Conserved hypothetical protein && - && -"]
[9,20813583,20813738,156,44,0.154144130556043,0.344759860495422,-0.190615729939379,-245.971813209266,"CHH","9:20813126:20815127","CGI_shore"]
[9,20813583,20813738,156,44,0.154144130556043,0.344759860495422,-0.190615729939379,-245.971813209266,"CHH","Os09g0531200","promoter","ML6","RNA recognition motif 2 domain containing protein && sp|Q652K6|OML6_ORYSJ Protein MEI2-like 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ML6 PE=2 SV=1 && PF04059:RNA recognition motif 2"]
[9,20883970,20884086,117,43,0.565155096952422,0.851277821270652,-0.28612272431823,-210.096103745697,"CG","9:20880896:20884347","CGI"]
[9,20905562,20905688,127,53,0.281893393054124,0.0721562557550177,0.209737137299106,233.694225723924,"CG","9:20905418:20906391","CGI"]
[9,20905562,20905688,127,53,0.281893393054124,0.0721562557550177,0.209737137299106,233.694225723924,"CG","Os09g0532800","exon","Os09g0532800","Similar to peptidase S8 and S53, subtilisin, kexin, sedolisin && - && -"]
[9,20963330,20963513,184,45,0.240980782558125,0.123163227994104,0.11781755456402,209.015129085714,"CHH","Os09g0533650","intron","Os09g0533650","Conserved hypothetical protein && sp|Q9SF86|PCRK1_ARATH Serine/threonine-protein kinase PCRK1 OS=Arabidopsis thaliana OX=3702 GN=PCRK1 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[9,20963330,20963513,184,45,0.240980782558125,0.123163227994104,0.11781755456402,209.015129085714,"CHH","9:20962889:20964890","CGI_shore"]
[9,20963330,20963513,184,45,0.240980782558125,0.123163227994104,0.11781755456402,209.015129085714,"CHH","Os09g0533600","intron","BROAD-SPECTRUM RESISTANCE 1","Similar to Avr9/Cf-9 induced kinase 1 && sp|Q9LTC0|PBL19_ARATH Probable serine/threonine-protein kinase PBL19 OS=Arabidopsis thaliana OX=3702 GN=PBL19 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[9,21057953,21058044,92,23,0.0826313395042033,0.00273757631158608,0.0798937631926172,100.623595901008,"CHH","9:21054612:21062483","CGI"]
[9,21057953,21058044,92,23,0.0826313395042033,0.00273757631158608,0.0798937631926172,100.623595901008,"CHH","Os09g0535500","promoter","Os09g0535500","Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8) && sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 && PF13639:Ring finger domain"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","Os09g0536700","exon","MAJOR FACILITATOR SUPERFAMILY 5","Similar to predicted protein && sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1 && -"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","9:21111722:21113723","CGI_shore"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","Os09g0536800","exon","Os09g0536800","Hypothetical protein && sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1 && PF06813:Nodulin-like"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","9:21112764:21114483","CGI"]
[9,21116270,21116452,183,59,0.191191870475119,0.0884782586299396,0.102713611845179,328.247728850624,"CHH","Os09g0536700","promoter","MAJOR FACILITATOR SUPERFAMILY 5","Similar to predicted protein && sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1 && -"]
[9,21116270,21116452,183,59,0.191191870475119,0.0884782586299396,0.102713611845179,328.247728850624,"CHH","9:21114483:21116484","CGI_shore"]
[9,21116270,21116452,183,59,0.191191870475119,0.0884782586299396,0.102713611845179,328.247728850624,"CHH","9:21114753:21116753","CGI_shore"]
[9,21128499,21128655,157,38,0.422120425256725,0.243602803325095,0.178517621931631,211.18008322174,"CHH","9:21127524:21129525","CGI_shore"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","9:21131110:21133110","CGI_shore"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","9:21131242:21133243","CGI_shore"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","Os09g0537000","exon","Os09g0537000","Hypothetical protein && - && -"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","Os09g0537200","promoter","Os09g0537200","Conserved hypothetical protein && - && -"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","Os09g0537100","exon","Os09g0537100","Conserved hypothetical protein && - && -"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","9:21133111:21135014","CGI"]
[9,21135657,21135740,84,14,0.179786266129378,0.486442324701035,-0.306656058571657,-95.6138706376615,"CG","Os09g0537000","promoter","Os09g0537000","Hypothetical protein && - && -"]
[9,21135657,21135740,84,14,0.179786266129378,0.486442324701035,-0.306656058571657,-95.6138706376615,"CG","Os09g0537200","exon","Os09g0537200","Conserved hypothetical protein && - && -"]
[9,21135657,21135740,84,14,0.179786266129378,0.486442324701035,-0.306656058571657,-95.6138706376615,"CG","9:21135014:21137015","CGI_shore"]
[9,21159349,21159441,93,32,0.319324980700715,0.105537108750674,0.213787871950041,177.359879229931,"CHH","Os09g0537700","promoter","RIBONUCLEASE 4","S-like ribonuclease, Salinity tolerance, Abiotic stress response, Regulation of photomorphogenesi && - && PF00445:Ribonuclease T2 family"]
[9,21159349,21159441,93,32,0.319324980700715,0.105537108750674,0.213787871950041,177.359879229931,"CHH","9:21158156:21160156","CGI_shore"]
[9,21171330,21171481,152,21,0.688183000184567,0.907026565612582,-0.218843565428014,-82.6969851237486,"CG","Os09g0538200","promoter","20S proteasome alpha4 subunit","Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4) && sp|A2Z3I9|PSA7B_ORYSI Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica OX=39946 GN=PAD1 PE=2 SV=1 && PF10584:Proteasome subunit A N-terminal signature|PF00227:Proteasome subunit"]
[9,21171330,21171481,152,21,0.688183000184567,0.907026565612582,-0.218843565428014,-82.6969851237486,"CG","9:21170464:21172307","CGI"]
[9,21171461,21171579,119,18,0.10792728785958,0.461695132372606,-0.353767844513026,-156.801796902867,"CHH","Os09g0538200","promoter","20S proteasome alpha4 subunit","Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4) && sp|A2Z3I9|PSA7B_ORYSI Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica OX=39946 GN=PAD1 PE=2 SV=1 && PF10584:Proteasome subunit A N-terminal signature|PF00227:Proteasome subunit"]
[9,21171461,21171579,119,18,0.10792728785958,0.461695132372606,-0.353767844513026,-156.801796902867,"CHH","9:21170464:21172307","CGI"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538800","utr5","Os09g0538800","Similar to Synaptotagmin C && sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2 && -"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","9:21216449:21218449","CGI_shore"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538901","exon","Os09g0538901","Hypothetical protein && sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana OX=3702 GN=SYT2 PE=2 SV=1 && -"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538901","utr3","Os09g0538901","Hypothetical protein && sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana OX=3702 GN=SYT2 PE=2 SV=1 && -"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538800","exon","Os09g0538800","Similar to Synaptotagmin C && sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2 && -"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540600","promoter","Mediator 4_1","Similar to WD-40 repeat protein MSI1 && sp|Q10G81|MSI1_ORYSJ Histone-binding protein MSI1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=MSI1 PE=2 SV=1 && PF12265:Histone-binding protein RBBP4 or subunit C of CAF1 complex"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","exon","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","utr5","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","TSS","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","promoter","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","9:21260784:21277159","CGI"]
[9,21366643,21366788,146,63,0.135485020283929,0.0511683023829927,0.084316717900936,267.239359020703,"CG","Os09g0542500","promoter","Os09g0542500","Domain of unknown function DUF632 domain containing protein && sp|A0A178VBJ0|APSR1_ARATH Protein ALTERED PHOSPHATE STARVATION RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=APSR1 PE=2 SV=1 && PF04782:Protein of unknown function (DUF632)"]
[9,21366643,21366788,146,63,0.135485020283929,0.0511683023829927,0.084316717900936,267.239359020703,"CG","9:21366507:21367380","CGI"]
[9,21386353,21386539,187,61,0.209035316272052,0.0491545936594243,0.159880722612627,282.639368096843,"CG","9:21382230:21393018","CGI"]
[9,21386353,21386539,187,61,0.209035316272052,0.0491545936594243,0.159880722612627,282.639368096843,"CG","Os09g0542900","exon","Os09g0542900","Conserved hypothetical protein && - && -"]
[9,21419646,21419759,114,18,0.414399573345551,0.179612063716437,0.234787509629114,85.6581471320957,"CHH","9:21418442:21420442","CGI_shore"]
[9,21419646,21419759,114,18,0.414399573345551,0.179612063716437,0.234787509629114,85.6581471320957,"CHH","9:21418770:21420771","CGI_shore"]
[9,21487344,21487441,98,26,0.0838429282544865,0.0154777638896796,0.0683651643648069,122.60452225047,"CHH","Os09g0544300","promoter","Os09g0544300","ATMRK serine/threonine protein kinase-like domain containing protein && sp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY46 OS=Arabidopsis thaliana OX=3702 GN=STY46 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[9,21487344,21487441,98,26,0.0838429282544865,0.0154777638896796,0.0683651643648069,122.60452225047,"CHH","9:21486481:21488481","CGI_shore"]
[9,21649960,21650120,161,20,0.134072765391745,0.0180007020477626,0.116072063343983,96.0852098372226,"CHH","9:21648979:21650979","CGI_shore"]
[9,21649960,21650120,161,20,0.134072765391745,0.0180007020477626,0.116072063343983,96.0852098372226,"CHH","Target=(TA)n:1-291;Class=Simple_repeat","repeat"]
[9,21649960,21650120,161,20,0.134072765391745,0.0180007020477626,0.116072063343983,96.0852098372226,"CHH","Target=(TATATG)n:4-120;Class=Simple_repeat","repeat"]
[9,21710665,21711156,492,132,0.212409088499412,0.0859781805619666,0.126430907937445,771.606366896128,"CHH","9:21708692:21711498","CGI"]
[9,21711344,21711418,75,14,0.395109717343088,0.604157466818352,-0.209047749475265,-88.7646359651117,"CHG","9:21708692:21711498","CGI"]
[9,21811380,21811924,545,133,0.318791837272218,0.181811464271982,0.136980373000235,684.902327079899,"CHH","Os09g0551201","intron","Os09g0551201","Hypothetical conserved gene && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF01453:D-mannose binding lectin|PF00069:Protein kinase domain|PF08276:PAN-like domain|PF00954:S-locus glycoprotein domain"]
[9,21839135,21839195,61,19,0.174888099014148,0.0791284735293128,0.0957596254848356,91.2168522801568,"CHH","9:21839133:21841133","CGI_shore"]
[9,21839427,21839619,193,62,0.322765552848156,0.197469709528469,0.125295843319687,330.597929196157,"CHH","9:21839133:21841133","CGI_shore"]
[9,21839427,21839619,193,62,0.322765552848156,0.197469709528469,0.125295843319687,330.597929196157,"CHH","Os09g0551400","promoter","Os09g0551400","Similar to S-locus receptor-like kinase RLK14 && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF08276:PAN-like domain|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[9,21855834,21855912,79,23,0.246247215508165,0.116122834745806,0.13012438076236,117.251299275596,"CHH","9:21854578:21856578","CGI_shore"]
[9,21855834,21855912,79,23,0.246247215508165,0.116122834745806,0.13012438076236,117.251299275596,"CHH","Os09g0551600","promoter","Os09g0551600","Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101) && sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1 && PF00505:HMG (high mobility group) box"]
[9,21931417,21931754,338,92,0.187268314877926,0.0673640079561893,0.119904306921736,545.067713694877,"CHH","Os09g0553600","intron","Os09g0553600","Similar to NADC homolog && sp|Q0IZS0|NADC_ORYSJ Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0553600 PE=2 SV=1 && PF02749:Quinolinate phosphoribosyl transferase, N-terminal domain|PF01729:Quinolinate phosphoribosyl transferase, C-terminal domain"]
[9,21931417,21931754,338,92,0.187268314877926,0.0673640079561893,0.119904306921736,545.067713694877,"CHH","9:21931346:21933347","CGI_shore"]
[9,21953854,21954045,192,48,0.0963876938888384,0.0370980048421246,0.0592896890467138,246.590634008233,"CHH","Os09g0554000","promoter","PHOSPHATE TRANSPORTER 20","Similar to Mitochondrial phosphate transporter && sp|Q7DNC3|MPCP1_ARATH Mitochondrial phosphate carrier protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MPT1 PE=2 SV=1 && -"]
[9,21953854,21954045,192,48,0.0963876938888384,0.0370980048421246,0.0592896890467138,246.590634008233,"CHH","9:21952550:21954551","CGI_shore"]
[9,22199248,22199492,245,44,0.57604672435757,0.867461010425466,-0.291414286067896,-220.232842408205,"CG","9:22198817:22202900","CGI"]
[9,22270172,22270284,113,22,0.249954925567744,0.440368059143123,-0.190413133575379,-100.474478536037,"CHG","Os09g0560400","promoter","Os09g0560400","Hypothetical conserved gene && - && -"]
[9,22270172,22270284,113,22,0.249954925567744,0.440368059143123,-0.190413133575379,-100.474478536037,"CHG","9:22269609:22271610","CGI_shore"]
[9,22270172,22270284,113,22,0.249954925567744,0.440368059143123,-0.190413133575379,-100.474478536037,"CHG","Os09g0560450","exon","Os09g0560450","Similar to Regulator of chromosome condensation/beta-lactamase-inhibitor protein II && sp|Q9FJG9|RUG3_ARATH RCC1 domain-containing protein RUG3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RUG3 PE=1 SV=1 && PF00415:Regulator of chromosome condensation (RCC1) repeat"]
[9,22375541,22375686,146,34,0.385880612475886,0.238139760927166,0.14774085154872,171.59052790672,"CHH","Os09g0563200","promoter","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18","Similar to Potassium transporter 11 (AtPOT11) && sp|Q653B6|HAK18_ORYSJ Potassium transporter 18 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK18 PE=2 SV=1 && -"]
[9,22375541,22375686,146,34,0.385880612475886,0.238139760927166,0.14774085154872,171.59052790672,"CHH","Os09g0563250","promoter","Os09g0563250","Zinc finger, DHHC-type, palmitoyltransferase domain containing protein && sp|Q8L5Y5|ZDH17_ARATH Probable protein S-acyltransferase 19 OS=Arabidopsis thaliana OX=3702 GN=PAT19 PE=2 SV=1 && PF01529:DHHC palmitoyltransferase"]
[9,22375541,22375686,146,34,0.385880612475886,0.238139760927166,0.14774085154872,171.59052790672,"CHH","9:22374981:22376981","CGI_shore"]
[9,22390644,22390709,66,17,0.337585764885597,0.142905666016178,0.194680098869419,124.591419202211,"CHH","9:22387705:22392754","CGI"]
[9,22431400,22431571,172,35,0.499358476959172,0.264724538787778,0.234633938171394,192.552096167064,"CHH","9:22430401:22432402","CGI_shore"]
[9,22431400,22431571,172,35,0.499358476959172,0.264724538787778,0.234633938171394,192.552096167064,"CHH","Os09g0564200","intron","Os09g0564200","Hypothetical conserved gene && sp|P43156|CYSP_HEMSP Thiol protease SEN102 OS=Hemerocallis sp. OX=29711 GN=SEN102 PE=2 SV=1 && PF00112:Papain family cysteine protease"]
[9,22436389,22436674,286,92,0.097612564793026,0.0379263023407777,0.0596862624522483,454.71380765445,"CHH","9:22436067:22438067","CGI_shore"]
[9,22436389,22436674,286,92,0.097612564793026,0.0379263023407777,0.0596862624522483,454.71380765445,"CHH","9:22436502:22438502","CGI_shore"]
[9,22458364,22458445,82,32,0.081631082423358,0.168934603548178,-0.0873035211248201,-173.492803179453,"CHH","9:22456435:22458436","CGI_shore"]
[9,22458364,22458445,82,32,0.081631082423358,0.168934603548178,-0.0873035211248201,-173.492803179453,"CHH","Os09g0564700","promoter","Os09g0564700","Similar to Vignain && sp|P43156|CYSP_HEMSP Thiol protease SEN102 OS=Hemerocallis sp. OX=29711 GN=SEN102 PE=2 SV=1 && PF00112:Papain family cysteine protease|PF08246:Cathepsin propeptide inhibitor domain (I29)"]
[9,22458364,22458445,82,32,0.081631082423358,0.168934603548178,-0.0873035211248201,-173.492803179453,"CHH","9:22457574:22459575","CGI_shore"]
[9,22464621,22464722,102,22,0.400323066782816,0.185312346483386,0.21501072029943,108.203931603572,"CHH","9:22462864:22464865","CGI_shore"]
[9,22464621,22464722,102,22,0.400323066782816,0.185312346483386,0.21501072029943,108.203931603572,"CHH","9:22463816:22465816","CGI_shore"]
[9,22642291,22642365,75,27,0.193131000611417,0.0896079674950494,0.103523033116368,161.537667961025,"CHH","9:22640644:22642645","CGI_shore"]
[9,22798883,22799046,164,45,0.136824953959372,0.322043951606042,-0.18521899764667,-230.956512010798,"CHH","Os09g0570900","promoter","Os09g0570900","Amino acid-binding ACT domain containing protein && sp|Q9SJM1|ACR10_ARATH ACT domain-containing protein ACR10 OS=Arabidopsis thaliana OX=3702 GN=ACR10 PE=2 SV=1 && -"]
[9,22798883,22799046,164,45,0.136824953959372,0.322043951606042,-0.18521899764667,-230.956512010798,"CHH","9:22797764:22799765","CGI_shore"]
[9,22843306,22843519,214,55,0.19999982914137,0.087326143574187,0.112673685567183,256.556347114387,"CHH","9:22842542:22844543","CGI_shore"]
[9,22886464,22886810,347,95,0.202768488765291,0.0636543668477294,0.139114121917562,711.573554131269,"CHH","Os09g0572400","intron","ABC TRANSPORTER F FAMILY MEMBER 5","Similar to Abcf2-prov protein && sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCF1 PE=2 SV=1 && PF00005:ABC transporter|PF12848:ABC transporter"]
[9,22886464,22886810,347,95,0.202768488765291,0.0636543668477294,0.139114121917562,711.573554131269,"CHH","Os09g0572450","intron","Os09g0572450","Hypothetical protein && sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCF1 PE=2 SV=1 && PF00005:ABC transporter|PF12848:ABC transporter"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572700","utr5","UCLACYANIN-LIKE PROTEIN 33","Similar to Blue copper-binding protein && - && -"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572700","exon","UCLACYANIN-LIKE PROTEIN 33","Similar to Blue copper-binding protein && - && -"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572700","promoter","UCLACYANIN-LIKE PROTEIN 33","Similar to Blue copper-binding protein && - && -"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","9:22906000:22908000","CGI_shore"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572800","promoter","Os09g0572800","Ole e 1 allergen family protein && sp|P33050|PSC13_MAIZE Pollen-specific protein C13 OS=Zea mays OX=4577 GN=MGS1 PE=2 SV=1 && PF01190:Pollen proteins Ole e I like"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","9:22928480:22930480","CGI_shore"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","Os09g0573100","promoter","Os09g0573100","Ubiquitin domain containing protein && - && PF10260:Uncharacterized conserved domain (SAYSvFN)"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","9:22928741:22930742","CGI_shore"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","9:22929473:22931473","CGI_shore"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","Os09g0573150","exon","Os09g0573150","AIG2-like domain containing protein && - && PF06094:Gamma-glutamyl cyclotransferase, AIG2-like"]
[9,22933577,22933695,119,35,0.210638768636818,0.0302466961838639,0.180392072452954,200.81560067322,"CHH","9:22931721:22933722","CGI_shore"]
[9,22933577,22933695,119,35,0.210638768636818,0.0302466961838639,0.180392072452954,200.81560067322,"CHH","Os09g0573200","promoter","Os09g0573200","Hypothetical conserved gene && - && PF12070:Protein SCAI"]
[9,22933577,22933695,119,35,0.210638768636818,0.0302466961838639,0.180392072452954,200.81560067322,"CHH","9:22932027:22934027","CGI_shore"]
["AC155918",31882,31992,111,32,0.14841911604865,0.0620817191451539,0.0863373969034958,126.959893102191,"CHH","AC155918:31769:32134","CGI"]
["AC160949",63503,63579,77,22,0.497892261598537,0.27863239736835,0.219259864230187,86.9265748128999,"CHG","AC160949:62837:64838","CGI_shore"]
["AC160949",81128,81376,249,89,0.180617941482584,0.110062042721039,0.0705558987615454,557.635249464741,"CHH","AC160949:80758:82707","CGI"]
["AC160949",81855,81965,111,17,0.0841234757455927,0.0188056837387232,0.0653177920068695,88.0500769902801,"CHH","AC160949:80758:82707","CGI"]
["AC160949",88354,88496,143,43,0.112809799203381,0.0315182868765004,0.0812915123268808,201.720120739377,"CHH","AC160949:88340:90340","CGI_shore"]
["AC160949",93668,93758,91,16,0.082238745667992,0.0183384878945862,0.0639002577734058,77.8162821186748,"CHH","AC160949:92624:94625","CGI_shore"]
["AC160949",108612,108712,101,20,0.0828542766983096,0.00675233867310717,0.0761019380252025,102.121125280934,"CHH","AC160949:107774:109775","CGI_shore"]
["AC160949",113268,113332,65,25,0.10774547339461,0.0286008239544992,0.0791446494401108,134.642832369276,"CHH","AC160949:111907:113907","CGI_shore"]
["AC160949",113268,113332,65,25,0.10774547339461,0.0286008239544992,0.0791446494401108,134.642832369276,"CHH","AC160949:113245:115246","CGI_shore"]
["AP008246",99398,99509,112,18,0.208525457060974,0.0271744365968098,0.181351020464164,86.7921675677566,"CHH","AP008246:98978:100979","CGI_shore"]
["AP008246",108652,108812,161,34,0.214533194144235,0.0697203732979359,0.144812820846299,178.361963816784,"CHH","AP008246:107633:109633","CGI_shore"]
["AP008246",132849,132904,56,25,0.0829241245328787,0.0130712327535565,0.0698528917793222,167.272454957097,"CHH","AP008246:132235:134236","CGI_shore"]
["AP008246",132849,132904,56,25,0.0829241245328787,0.0130712327535565,0.0698528917793222,167.272454957097,"CHH","AP008246:132842:133299","CGI"]
["AP008246",134296,134492,197,82,0.0774524747829842,0.0140996253978789,0.0633528493851053,387.949934797468,"CHH","AP008246:133299:135300","CGI_shore"]
["AP008246",174097,174198,102,19,0.0765915096822766,0.0175533023448197,0.0590382073374569,85.1087910099209,"CHH","AP008246:172474:174474","CGI_shore"]
["AP008246",179685,179821,137,50,0.125029930398955,0.0454540197668517,0.0795759106321033,233.443381884443,"CHH","AP008246:178249:180249","CGI_shore"]
["AP008247",38595,38862,268,88,0.447521436369532,0.20863758725478,0.238883849114752,527.807921340367,"CHH","AP008247:38748:40748","CGI_shore"]
["AP008247",139546,139692,147,37,0.262263735023768,0.085068641872016,0.177195093151752,201.171002052095,"CHH","AP008247:137895:139895","CGI_shore"]
["AP008247",139546,139692,147,37,0.262263735023768,0.085068641872016,0.177195093151752,201.171002052095,"CHH","AP008247:139024:141024","CGI_shore"]
["AP008247",145212,145312,101,18,0.0944494897613087,0.0271269647579312,0.0673225250033775,84.4484628241199,"CHH","AP008247:144003:146003","CGI_shore"]
["AP008247",154164,154316,153,38,0.194327864450484,0.0834920583863968,0.110835806064087,183.080766478109,"CHH","AP008247:152532:154533","CGI_shore"]
["AP008247",154164,154316,153,38,0.194327864450484,0.0834920583863968,0.110835806064087,183.080766478109,"CHH","AP008247:153173:155173","CGI_shore"]
["Mt",414921,416243,1323,18,0.19386300719181,0.655010211150843,-0.461147203959033,-97.8466802036374,"CHG","Mt:413300:415228","CGI"]
["Mt",414921,416243,1323,18,0.19386300719181,0.655010211150843,-0.461147203959033,-97.8466802036374,"CHG","Mt:415228:417229","CGI_shore"]
["Syng_TIGR_027",533,591,59,5,0.225359088519543,0.595906653737633,-0.370547565218091,-23.6288936411165,"CHG","Syng_TIGR_027:0:733","CGI_shore"]
["Syng_TIGR_028",1248,1334,87,13,0.528957494473041,0.791297715338381,-0.262340220865339,-55.106778036151,"CG","Syng_TIGR_028:745:2745","CGI_shore"]
["Syng_TIGR_033",1920,2113,194,45,0.157966083181122,0.0458635344140633,0.112102548767059,220.229382091174,"CHH","Syng_TIGR_033:435:2436","CGI_shore"]
["Syng_TIGR_033",1920,2113,194,45,0.157966083181122,0.0458635344140633,0.112102548767059,220.229382091174,"CHH","Syng_TIGR_033:1527:3528","CGI_shore"]

{"sheet":"DMRs of hyper annotation","index":1,"n_rows":15935,"n_cols":14,"rows_kept":4500,"cut":true,"merged":[[0,0,0,7]],"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Table S3b. DMRs of hyper annotation between OICD and OIBP."]
["#chr","start","end","length","nCG","CK1_meanMethy","WT_meanMethy","diff.Methy","areaStat","C_context","regionID","region","gene_name","gene_description"]
[1,2542,2680,139,52,0.255850211306293,0.125184294788304,0.130665916517989,280.156714604283,"CHH","Os01g0100100","promoter","Os01g0100100","RabGAP/TBC domain containing protein && sp|Q94BY9|GAP22_ARATH Rab GTPase-activating protein 22 OS=Arabidopsis thaliana OX=3702 GN=RABGAP22 PE=1 SV=1 && PF00566:Rab-GTPase-TBC domain"]
[1,2542,2680,139,52,0.255850211306293,0.125184294788304,0.130665916517989,280.156714604283,"CHH","1:2054:4055","CGI_shore"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","Os01g0100400","promoter","Os01g0100400","Similar to Pectinesterase-like protein && sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana OX=3702 GN=SKU5 PE=1 SV=1 && PF00394:Multicopper oxidase|PF07732:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","Os01g0100200","utr5","Os01g0100200","Conserved hypothetical protein && sp|Q9LUC9|C7A11_ARATH Cytochrome P450 72A11 OS=Arabidopsis thaliana OX=3702 GN=CYP72A11 PE=2 SV=1 && -"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","Os01g0100200","exon","Os01g0100200","Conserved hypothetical protein && sp|Q9LUC9|C7A11_ARATH Cytochrome P450 72A11 OS=Arabidopsis thaliana OX=3702 GN=CYP72A11 PE=2 SV=1 && -"]
[1,11296,11366,71,13,0.368472058592541,0.221226952303692,0.147245106288848,59.1417915400844,"CG","1:11221:13704","CGI"]
[1,22165,22416,252,79,0.165208146672248,0.0613621917240567,0.103845954948191,357.177939154014,"CHH","Os01g0100600","promoter","Os01g0100600","Single-stranded nucleic acid binding R3H domain containing protein && - && -"]
[1,69115,69187,73,19,0.115602032470265,0.00760933749496989,0.107992694975296,96.5014751133116,"CHH","1:67294:69295","CGI_shore"]
[1,69115,69187,73,19,0.115602032470265,0.00760933749496989,0.107992694975296,96.5014751133116,"CHH","1:68002:70002","CGI_shore"]
[1,173444,173499,56,25,0.116061892597592,0.0147082294080432,0.101353663189549,130.811261953088,"CHH","Os01g0103000","promoter","Os01g0103000","Snf7 family protein && sp|Q9LPN5|VP601_ARATH Vacuolar protein sorting-associated protein 60.1 OS=Arabidopsis thaliana OX=3702 GN=VPS60-1 PE=1 SV=1 && PF03357:Snf7"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","Os01g0103400","exon","Os01g0103400","Hypothetical gene && - && -"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","1:185439:185818","CGI"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","1:185505:187505","CGI_shore"]
[1,185576,185688,113,28,0.762271446157981,0.491667776945877,0.270603669212105,126.956841312779,"CG","Os01g0103650","promoter","Os01g0103650","Hypothetical gene && - && -"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","Os01g0103400","exon","Os01g0103400","Hypothetical gene && - && -"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","1:185439:185818","CGI"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","1:185505:187505","CGI_shore"]
[1,185672,185742,71,19,0.165507750647977,0.0301799429573679,0.135327807690609,92.4370625681557,"CHH","Os01g0103650","promoter","Os01g0103650","Hypothetical gene && - && -"]
[1,221051,221201,151,44,0.167906490227492,0.0126567944199666,0.155249695807525,239.740661378245,"CHH","1:220923:222924","CGI_shore"]
[1,233866,234116,251,49,0.174839852078917,0.0136251043431265,0.161214747735791,281.256411249482,"CHH","1:231937:233937","CGI_shore"]
[1,233866,234116,251,49,0.174839852078917,0.0136251043431265,0.161214747735791,281.256411249482,"CHH","1:233938:234241","CGI"]
[1,233996,234093,98,9,0.686550908511524,0.330740237344949,0.355810671166575,43.6874080212882,"CHG","1:233938:234241","CGI"]
[1,234918,234996,79,37,0.0785914657721208,0.0150601582243943,0.0635313075477265,182.233249885963,"CHH","1:234241:236242","CGI_shore"]
[1,234918,234996,79,37,0.0785914657721208,0.0150601582243943,0.0635313075477265,182.233249885963,"CHH","1:234468:236468","CGI_shore"]
[1,238893,239121,229,39,0.268940318588894,0.0401372488624191,0.228803069726475,207.767647489904,"CHH","1:237597:239598","CGI_shore"]
[1,273736,273816,81,20,0.0571588896357017,0.00271036874511202,0.0544485208905897,95.7915148349985,"CHH","Os01g0104900","intron","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,273736,273816,81,20,0.0571588896357017,0.00271036874511202,0.0544485208905897,95.7915148349985,"CHH","1:272477:274477","CGI_shore"]
[1,273988,274069,82,18,0.0800917086964384,0.00744124156464687,0.0726504671317915,101.944228045055,"CHH","Os01g0104900","intron","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,273988,274069,82,18,0.0800917086964384,0.00744124156464687,0.0726504671317915,101.944228045055,"CHH","1:272477:274477","CGI_shore"]
[1,282933,283066,134,33,0.505565391294326,0.341198108598502,0.164367282695824,158.018954302559,"CHH","1:279995:284595","CGI"]
[1,301348,301446,99,16,0.308587129382061,0.166155997622432,0.142431131759628,102.632771195756,"CHH","Os01g0105700","promoter","basic helix-loop-helix protein 071","Basic helix-loop-helix dimerisation region bHLH domain containing protein && sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=2 && -"]
[1,314686,314802,117,46,0.151483582414344,0.0705569733902639,0.0809266090240797,221.377894584474,"CHH","1:313091:315091","CGI_shore"]
[1,314686,314802,117,46,0.151483582414344,0.0705569733902639,0.0809266090240797,221.377894584474,"CHH","Os01g0105900","promoter","Os01g0105900","Carbohydrate/purine kinase domain containing protein && sp|Q65D02|IOLC_BACLD 5-dehydro-2-deoxygluconokinase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=iolC PE=3 SV=1 && PF00294:pfkB family carbohydrate kinase"]
[1,314686,314802,117,46,0.151483582414344,0.0705569733902639,0.0809266090240797,221.377894584474,"CHH","1:314109:316110","CGI_shore"]
[1,317390,317478,89,29,0.500546240735871,0.262344220381771,0.2382020203541,133.339101574658,"CHH","1:315610:317611","CGI_shore"]
[1,351579,351719,141,26,0.312672636133941,0.0199707031201978,0.292701933013743,189.03190017824,"CHH","Os01g0106700","intron","Os01g0106700","Hypothetical conserved gene && sp|Q9M3G7|ATM_ARATH Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana OX=3702 GN=ATM PE=1 SV=1 && PF00454:Phosphatidylinositol 3- and 4-kinase|PF02260:FATC domain"]
[1,390878,391060,183,46,0.150102296108656,0.0697187891558508,0.0803835069528054,218.205344749616,"CHH","1:390554:392555","CGI_shore"]
[1,457846,457951,106,23,0.27736287848244,0.150420338604066,0.126942539878374,110.045404397436,"CHH","1:455869:457870","CGI_shore"]
[1,457846,457951,106,23,0.27736287848244,0.150420338604066,0.126942539878374,110.045404397436,"CHH","1:457072:459073","CGI_shore"]
[1,494549,494607,59,16,0.153852171168872,0.0457289368400138,0.108123234328859,103.347914972871,"CHH","1:493211:495212","CGI_shore"]
[1,494549,494607,59,16,0.153852171168872,0.0457289368400138,0.108123234328859,103.347914972871,"CHH","1:493360:495360","CGI_shore"]
[1,688616,688735,120,20,0.12764997746498,0.00987850536246297,0.117771472102517,124.907446949911,"CHH","Os01g0112800","promoter","Os01g0112800","Disease resistance protein domain containing protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && -"]
[1,688616,688735,120,20,0.12764997746498,0.00987850536246297,0.117771472102517,124.907446949911,"CHH","1:687809:689809","CGI_shore"]
[1,716453,716618,166,57,0.265340528641049,0.130624735456724,0.134715793184325,313.927286842402,"CHH","1:715992:716648","CGI"]
[1,779818,779902,85,23,0.370661659824147,0.220961106112228,0.149700553711919,111.859422066389,"CHH","1:778307:780308","CGI_shore"]
[1,779818,779902,85,23,0.370661659824147,0.220961106112228,0.149700553711919,111.859422066389,"CHH","1:779423:781424","CGI_shore"]
[1,800297,800373,77,33,0.117036112132625,0.0360937096145126,0.0809424025181119,176.079001806622,"CHH","1:796234:803076","CGI"]
[1,849417,849631,215,54,0.330291632795679,0.0434970175858164,0.286794615209863,416.426243908748,"CHH","1:849288:851289","CGI_shore"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116800","promoter","Os01g0116800","Similar to Receptor-like kinase && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && PF00069:Protein kinase domain"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116901","intron","Os01g0116901","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116901","exon","Os01g0116901","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116901","utr3","Os01g0116901","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,937292,937614,323,80,0.394050590861965,0.226584721589194,0.167465869272771,464.072990231265,"CHH","Os01g0116900","intron","Os01g0116900","Protein kinase, catalytic domain domain containing protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && PF00069:Protein kinase domain"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","1:1065312:1065534","CGI"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","1:1065534:1067535","CGI_shore"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","Target=(CTA)n:1-95;Class=Simple_repeat","repeat"]
[1,1065463,1065585,123,39,0.14010150773322,0.0591466963235679,0.0809548114096516,166.149655821191,"CHH","1:1064701:1066701","CGI_shore"]
[1,1075575,1075829,255,53,0.43370091619015,0.250228682650124,0.183472233540025,282.510065571048,"CHH","1:1073655:1075656","CGI_shore"]
[1,1075575,1075829,255,53,0.43370091619015,0.250228682650124,0.183472233540025,282.510065571048,"CHH","Os01g0118700","promoter","Os01g0118700","Similar to HGA4 && sp|Q5Z8T8|XYXT1_ORYSJ Beta-1,2-xylosyltransferase XYXT1 OS=Oryza sativa subsp. japonica OX=39947 GN=XYXT1 PE=1 SV=1 && -"]
[1,1077307,1077450,144,43,0.197968305674021,0.0806971890161741,0.117271116657847,248.748136655057,"CHH","1:1076788:1078788","CGI_shore"]
[1,1077860,1078189,330,65,0.234766713423231,0.091672724270424,0.143093989152807,380.033242040271,"CHH","1:1076788:1078788","CGI_shore"]
[1,1086489,1086548,60,22,0.325945315330982,0.214334449386884,0.111610865944099,92.7046343384512,"CHH","1:1086420:1088421","CGI_shore"]
[1,1322730,1322891,162,48,0.459833026381564,0.242231019449043,0.217602006932521,275.607634022945,"CHH","1:1321770:1324511","CGI"]
[1,1343944,1344000,57,17,0.104637246990328,0.0240207418237227,0.0806165051666055,76.61054065234,"CHH","1:1342125:1344126","CGI_shore"]
[1,1343944,1344000,57,17,0.104637246990328,0.0240207418237227,0.0806165051666055,76.61054065234,"CHH","Os01g0124000","promoter","BOWMAN-BIRK INHIBITOR 2-1","Similar to Bowman Birk trypsin inhibitor && sp|A2WK50|IBBR_ORYSI Bowman-Birk type bran trypsin inhibitor OS=Oryza sativa subsp. indica OX=39946 GN=RBBI3.3 PE=2 SV=2 && PF00228:Bowman-Birk serine protease inhibitor family"]
[1,1343944,1344000,57,17,0.104637246990328,0.0240207418237227,0.0806165051666055,76.61054065234,"CHH","1:1343307:1345307","CGI_shore"]
[1,1431926,1432318,393,88,0.0798057052045968,0.0129929598215242,0.0668127453830726,431.581575990886,"CHH","Os01g0126100","promoter","LOW PHOSPHATE ROOT 1","Multicopper oxidas && sp|Q9AWU4|LPR1_ORYSJ Multicopper oxidase LPR1 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR1 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1431926,1432318,393,88,0.0798057052045968,0.0129929598215242,0.0668127453830726,431.581575990886,"CHH","1:1432085:1434085","CGI_shore"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","1:1495642:1497642","CGI_shore"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","Os01g0127200","TES","Low Phosphate Root5","Multicopper oxidase, Maintenance of Pi homeostasi && sp|A2ZNT5|LPR5_ORYSJ Multicopper oxidase LPR1 homolog 5 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR5 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","Os01g0127200","utr3","Low Phosphate Root5","Multicopper oxidase, Maintenance of Pi homeostasi && sp|A2ZNT5|LPR5_ORYSJ Multicopper oxidase LPR1 homolog 5 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR5 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1497059,1497243,185,38,0.077306289570222,0.0145758607280619,0.0627304288421602,189.943219421356,"CHH","Os01g0127200","exon","Low Phosphate Root5","Multicopper oxidase, Maintenance of Pi homeostasi && sp|A2ZNT5|LPR5_ORYSJ Multicopper oxidase LPR1 homolog 5 OS=Oryza sativa subsp. japonica OX=39947 GN=LPR5 PE=2 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,1610310,1610447,138,42,0.137200602159807,0.0503546579823491,0.0868459441774584,251.011308399441,"CHH","1:1609728:1611729","CGI_shore"]
[1,1633509,1633588,80,34,0.185953377127804,0.0654081393108321,0.120545237816972,189.803566318757,"CHH","1:1631740:1633741","CGI_shore"]
[1,1633509,1633588,80,34,0.185953377127804,0.0654081393108321,0.120545237816972,189.803566318757,"CHH","1:1632751:1634751","CGI_shore"]
[1,1664872,1665007,136,33,0.504383482498504,0.318554993097965,0.185828489400539,150.717463089656,"CG","1:1664573:1665173","CGI"]
[1,1720150,1720327,178,60,0.360122265361706,0.172576278446576,0.187545986915131,307.518393876069,"CHH","1:1719886:1721887","CGI_shore"]
[1,1759788,1759876,89,26,0.241093114042171,0.143693385610562,0.0973997284316094,124.14794110295,"CHH","Os01g0131900","promoter","Os01g0131900","Similar to Wound-induced protease inhibitor (WIP1) && sp|P31862|IBBWP_MAIZE Bowman-Birk type wound-induced proteinase inhibitor WIP1 OS=Zea mays OX=4577 GN=WIP1 PE=2 SV=1 && -"]
[1,1780132,1780255,124,46,0.347244298596532,0.227745887516939,0.119498411079593,203.293395338245,"CHH","Os01g0132500","promoter","Os01g0132500","Protein of unknown function DUF1639 domain containing protein && - && PF07797:Protein of unknown function (DUF1639)"]
[1,1780132,1780255,124,46,0.347244298596532,0.227745887516939,0.119498411079593,203.293395338245,"CHH","1:1769126:1782013","CGI"]
[1,1792123,1792179,57,14,0.230503504695938,0.0865889304658221,0.143914574230116,70.439422064161,"CHH","Os01g0132700","promoter","Mediator 22_1","Surfeit locus 5 family protein && sp|Q9SA42|MD22A_ARATH Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1 && PF06179:Surfeit locus protein 5 subunit 22 of Mediator complex"]
[1,1792123,1792179,57,14,0.230503504695938,0.0865889304658221,0.143914574230116,70.439422064161,"CHH","1:1791604:1793605","CGI_shore"]
[1,1817895,1817959,65,15,0.0868840148308875,0.02277993839773,0.0641040764331574,76.3113691363285,"CHH","1:1817112:1818615","CGI"]
[1,1817895,1817959,65,15,0.0868840148308875,0.02277993839773,0.0641040764331574,76.3113691363285,"CHH","Os01g0132800","promoter","Os01g0132800","Peptidyl-tRNA hydrolase family protein && sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0132800 PE=2 SV=1 && PF01195:Peptidyl-tRNA hydrolase"]
[1,1832339,1832399,61,16,0.32705137216525,0.137608089893514,0.189443282271737,85.0377026921272,"CHH","1:1830636:1832636","CGI_shore"]
[1,1832339,1832399,61,16,0.32705137216525,0.137608089893514,0.189443282271737,85.0377026921272,"CHH","Os01g0133100","promoter","Os01g0133100","Conserved hypothetical protein && - && -"]
[1,1925468,1925699,232,24,0.549019917351018,0.13428464395037,0.414735273400648,125.77401950666,"CHG","1:1902468:1934733","CGI"]
[1,1961496,1961570,75,15,0.16403193638127,0.0331947336996978,0.130837202681573,76.2008538108395,"CHH","1:1960467:1963787","CGI"]
[1,1961496,1961570,75,15,0.16403193638127,0.0331947336996978,0.130837202681573,76.2008538108395,"CHH","Os01g0136400","intron","WALL-ASSOCIATED KINASE GENE 1","Protein kinase, core domain containing protein && sp|P0C5E2|LRL12_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-1.2 PE=2 SV=3 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF14380:Wall-associated receptor kinase C-terminal|PF00069:Protein kinase domain"]
[1,1985730,1985827,98,16,0.140823937243205,0.0200116503558585,0.120812286887347,78.0838394258522,"CHG","1:1984815:1986815","CGI_shore"]
[1,1985730,1985827,98,16,0.140823937243205,0.0200116503558585,0.120812286887347,78.0838394258522,"CHG","1:1985008:1987009","CGI_shore"]
[1,1985730,1985827,98,16,0.140823937243205,0.0200116503558585,0.120812286887347,78.0838394258522,"CHG","Os01g0136900","exon","Os01g0136900","Similar to Stress-induced receptor-like kinase 2 && sp|F4HQ20|LRL25_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.5 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF07714:Protein tyrosine kinase|PF14380:Wall-associated receptor kinase C-terminal"]
[1,1987508,1987650,143,32,0.312117266579475,0.164293861480236,0.147823405099238,190.173855782689,"CHH","Os01g0137400","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 21","Protein kinase, catalytic domain domain containing protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[1,1987508,1987650,143,32,0.312117266579475,0.164293861480236,0.147823405099238,190.173855782689,"CHH","1:1986797:1988797","CGI_shore"]
[1,1987508,1987650,143,32,0.312117266579475,0.164293861480236,0.147823405099238,190.173855782689,"CHH","1:1987109:1989110","CGI_shore"]
[1,1990565,1990686,122,41,0.225446644036543,0.0913272359082591,0.134119408128284,231.730261757153,"CHH","1:1989345:1991346","CGI_shore"]
[1,1990565,1990686,122,41,0.225446644036543,0.0913272359082591,0.134119408128284,231.730261757153,"CHH","Os01g0137125","intron","Os01g0137125","Hypothetical protein && sp|D7SFH9|LRL26_ARATH Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.6 PE=1 SV=1 && -"]
[1,1990565,1990686,122,41,0.225446644036543,0.0913272359082591,0.134119408128284,231.730261757153,"CHH","Os01g0137400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 21","Protein kinase, catalytic domain domain containing protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","Os01g0137125","intron","Os01g0137125","Hypothetical protein && sp|D7SFH9|LRL26_ARATH Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.6 PE=1 SV=1 && -"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","Os01g0137200","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 20","Hypothetical conserved gene && - && PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","1:1991618:1993618","CGI_shore"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","1:1992867:1994867","CGI_shore"]
[1,1992756,1992954,199,42,0.433716686354846,0.242430081864835,0.191286604490011,236.34903319955,"CHH","Os01g0137400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 21","Protein kinase, catalytic domain domain containing protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[1,2005015,2005085,71,25,0.754648101662031,0.605437334894608,0.149210766767423,118.221840766622,"CG","1:2003602:2011709","CGI"]
[1,2005015,2005085,71,25,0.754648101662031,0.605437334894608,0.149210766767423,118.221840766622,"CG","Os01g0137300","promoter","Os01g0137300","Hypothetical protein && sp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.1 PE=3 SV=1 && PF00069:Protein kinase domain"]
[1,2006897,2007082,186,61,0.287975858593436,0.108292376706413,0.179683481887023,365.056808159031,"CHH","1:2003602:2011709","CGI"]
[1,2025140,2025227,88,16,0.300823418922148,0.0533267762151876,0.24749664270696,78.6205796572259,"CHH","1:2024825:2026826","CGI_shore"]
[1,2025140,2025227,88,16,0.300823418922148,0.0533267762151876,0.24749664270696,78.6205796572259,"CHH","Os01g0137700","exon","Os01g0137700","Conserved hypothetical protein && - && PF14380:Wall-associated receptor kinase C-terminal|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,2025140,2025227,88,16,0.300823418922148,0.0533267762151876,0.24749664270696,78.6205796572259,"CHH","Os01g0137700","utr3","Os01g0137700","Conserved hypothetical protein && - && PF14380:Wall-associated receptor kinase C-terminal|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,2043793,2043968,176,45,0.16301569452739,0.0121815551341515,0.150834139393239,253.67094922195,"CHH","Os01g0138000","promoter","Os01g0138000","Hypothetical protein && - && PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,2043793,2043968,176,45,0.16301569452739,0.0121815551341515,0.150834139393239,253.67094922195,"CHH","1:2038468:2059547","CGI"]
[1,2062986,2063042,57,26,0.0436654230614383,0.00928410853154959,0.0343813145298887,159.592068791292,"CHH","1:2061196:2063197","CGI_shore"]
[1,2062986,2063042,57,26,0.0436654230614383,0.00928410853154959,0.0343813145298887,159.592068791292,"CHH","1:2061955:2063956","CGI_shore"]
[1,2114332,2114417,86,35,0.231301727735255,0.133645669240782,0.0976560584944726,150.454887138148,"CHH","1:2112440:2114441","CGI_shore"]
[1,2152971,2153039,69,17,0.192865920920359,0.0800012146579348,0.112864706262425,79.3584579354242,"CHH","1:2151209:2153210","CGI_shore"]
[1,2152971,2153039,69,17,0.192865920920359,0.0800012146579348,0.112864706262425,79.3584579354242,"CHH","1:2152243:2154243","CGI_shore"]
[1,2152971,2153039,69,17,0.192865920920359,0.0800012146579348,0.112864706262425,79.3584579354242,"CHH","Os01g0140700","promoter","APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 77","Similar to RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor && sp|Q9AWS7|Y1407_ORYSJ Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0140700 PE=3 SV=1 && PF02362:B3 DNA binding domain|PF00847:AP2 domain"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","1:2225056:2227057","CGI_shore"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","1:2225836:2227837","CGI_shore"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141450","exon","Os01g0141450","Hypothetical gene && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && -"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141450","utr5","Os01g0141450","Hypothetical gene && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && -"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141300","exon","Os01g0141300","Similar to vacuolar sorting protein 4b && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && PF09336:Vps4 C terminal oligomerisation domain|PF00004:ATPase family associated with various cellular activities (AAA)|PF04212:MIT (microtubule interacting and transport) domain"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141300","intron","Os01g0141300","Similar to vacuolar sorting protein 4b && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && PF09336:Vps4 C terminal oligomerisation domain|PF00004:ATPase family associated with various cellular activities (AAA)|PF04212:MIT (microtubule interacting and transport) domain"]
[1,2226938,2227066,129,33,0.503339182617041,0.234343542893886,0.268995639723154,232.392094483947,"CHH","Os01g0141450","intron","Os01g0141450","Hypothetical gene && sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=SKD1 PE=1 SV=1 && -"]
[1,2286646,2286872,227,61,0.242076947563813,0.0562698283717215,0.185807119192091,561.500126097104,"CHH","Os01g0142500","promoter","Os01g0142500","Homeodomain-like containing protein && sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1 && PF00249:Myb-like DNA-binding domain"]
[1,2400139,2400313,175,46,0.120747936565179,0.0513391433402073,0.0694087932249721,222.59782053285,"CHH","1:2399499:2401360","CGI"]
[1,2471727,2471927,201,30,0.322646137198413,0.0337885032923692,0.288857633906044,213.025893726924,"CHH","1:2471567:2473568","CGI_shore"]
[1,2486540,2486728,189,44,0.537347358796355,0.301153414062139,0.236193944734216,287.246218125574,"CHH","1:2483964:2488701","CGI"]
[1,2486540,2486728,189,44,0.537347358796355,0.301153414062139,0.236193944734216,287.246218125574,"CHH","Os01g0146101","promoter","Os01g0146101","Conserved hypothetical protein && - && -"]
[1,2503461,2503668,208,38,0.353438088920982,0.160481035725661,0.192957053195322,188.281429182731,"CHH","1:2502241:2504242","CGI_shore"]
[1,2503461,2503668,208,38,0.353438088920982,0.160481035725661,0.192957053195322,188.281429182731,"CHH","1:2503415:2505415","CGI_shore"]
[1,2505296,2505464,169,38,0.247584927498766,0.0755394937015965,0.172045433797169,177.971600588027,"CHH","1:2503415:2505415","CGI_shore"]
[1,2505296,2505464,169,38,0.247584927498766,0.0755394937015965,0.172045433797169,177.971600588027,"CHH","1:2505416:2506040","CGI"]
[1,2523074,2523159,86,34,0.121295940102293,0.0354495739662427,0.0858463661360508,185.978046142197,"CHH","1:2521170:2523170","CGI_shore"]
[1,2523074,2523159,86,34,0.121295940102293,0.0354495739662427,0.0858463661360508,185.978046142197,"CHH","1:2521878:2523879","CGI_shore"]
[1,2539680,2539982,303,98,0.5065051984204,0.347063900191272,0.159441298229127,580.071226610653,"CHH","1:2538436:2540437","CGI_shore"]
[1,2549464,2549641,178,31,0.334565927090895,0.164402827384361,0.170163099706534,146.430838085105,"CHH","1:2546710:2551330","CGI"]
[1,2549464,2549641,178,31,0.334565927090895,0.164402827384361,0.170163099706534,146.430838085105,"CHH","Os01g0147001","promoter","Os01g0147001","Similar to H0212B02.9 protein && sp|B9FCV3|GT43_ORYSJ Probable glucuronosyltransferase Os04g0650300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0650300 PE=3 SV=1 && PF03360:Glycosyltransferase family 43"]
[1,2553190,2553374,185,56,0.370425952440436,0.2430808430087,0.127345109431736,254.045365701114,"CHH","1:2551330:2553331","CGI_shore"]
[1,2553190,2553374,185,56,0.370425952440436,0.2430808430087,0.127345109431736,254.045365701114,"CHH","1:2551670:2553670","CGI_shore"]
[1,2553190,2553374,185,56,0.370425952440436,0.2430808430087,0.127345109431736,254.045365701114,"CHH","1:2553246:2555246","CGI_shore"]
[1,2556981,2557141,161,47,0.070266683409054,0.0096001491882147,0.0606665342208393,232.931578357736,"CHH","1:2556389:2558354","CGI"]
[1,2556981,2557141,161,47,0.070266683409054,0.0096001491882147,0.0606665342208393,232.931578357736,"CHH","1:2555690:2557691","CGI_shore"]
[1,2674839,2674935,97,25,0.32857663242451,0.123094682079059,0.205481950345451,136.504010513386,"CG","1:2673984:2674917","CGI"]
[1,2674839,2674935,97,25,0.32857663242451,0.123094682079059,0.205481950345451,136.504010513386,"CG","Os01g0149350","promoter","Os01g0149350","NB-ARC domain containing protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && PF00931:NB-ARC domain|PF13855:Leucine rich repeat|PF18052:Rx N-terminal domain"]
[1,2674839,2674935,97,25,0.32857663242451,0.123094682079059,0.205481950345451,136.504010513386,"CG","1:2674917:2676918","CGI_shore"]
[1,2726851,2726935,85,23,0.179135046089611,0.0630964862522194,0.116038559837392,145.752419238073,"CHH","Os01g0150500","promoter","Os01g0150500","Similar to 3-hydroxyacyl-CoA dehydratase PASTICCINO 2A && sp|Q7XSZ4|HACDA_ORYSJ Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2 && PF04387:Protein tyrosine phosphatase-like protein, PTPLA"]
[1,2726851,2726935,85,23,0.179135046089611,0.0630964862522194,0.116038559837392,145.752419238073,"CHH","1:2726490:2728491","CGI_shore"]
[1,2738383,2738464,82,16,0.124366472183567,0.0277100830846495,0.0966563890989179,89.7721816355318,"CHH","Os01g0150700","promoter","Os01g0150700","Hypothetical conserved gene && - && PF14223:gag-polypeptide of LTR copia-type"]
[1,2738383,2738464,82,16,0.124366472183567,0.0277100830846495,0.0966563890989179,89.7721816355318,"CHH","1:2731574:2739664","CGI"]
[1,2750172,2750239,68,16,0.1439180847285,0.014197999369698,0.129720085358802,90.6328298258402,"CHH","Os01g0150900","promoter","Os01g0150900","Conserved hypothetical protein && - && -"]
[1,2750172,2750239,68,16,0.1439180847285,0.014197999369698,0.129720085358802,90.6328298258402,"CHH","1:2750164:2752165","CGI_shore"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","1:2855928:2857929","CGI_shore"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","Os01g0153150","promoter","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","Os01g0153100","exon","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","1:2857620:2858346","CGI"]
[1,2857816,2858093,278,55,0.0939324475148475,0.0228685934666446,0.0710638540482029,279.929342375713,"CG","Os01g0153100","utr5","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","1:2855928:2857929","CGI_shore"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","Os01g0153150","promoter","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","Os01g0153100","exon","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2857892,2858032,141,20,0.0673729495505951,0.0074249827008645,0.0599479668497306,81.5662782453446,"CHG","1:2857620:2858346","CGI"]
[1,2858404,2858575,172,29,0.366138119715436,0.0661990680196335,0.299939051695802,159.098280648675,"CHH","Os01g0153150","promoter","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2858404,2858575,172,29,0.366138119715436,0.0661990680196335,0.299939051695802,159.098280648675,"CHH","Os01g0153100","promoter","F-box protein 2","Similar to Histone H2B-3 (Fragment) && sp|Q9LGH4|H2B6_ORYSJ Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2858404,2858575,172,29,0.366138119715436,0.0661990680196335,0.299939051695802,159.098280648675,"CHH","1:2858346:2860347","CGI_shore"]
[1,2877888,2878056,169,47,0.118340413098129,0.0420370864443415,0.0763033266537875,248.813475650093,"CHH","Os01g0153400","intron","Os01g0153400","Similar to tRNA synthetase class II (D, K and N) family protein && sp|F4JJT9|SYDM_ARATH Aspartate--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g33760 PE=2 SV=1 && PF00152:tRNA synthetases class II (D, K and N)|PF02938:GAD domain"]
[1,2981901,2982093,193,52,0.577854821244147,0.352666573488254,0.225188247755893,347.21400405791,"CHH","Os01g0155500","promoter","Catharanthus roseus receptor-like kinase1-like kinase 4","Protein kinase, catalytic domain domain containing protein && sp|Q9LX66|HERK_ARATH Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana OX=3702 GN=HERK1 PE=1 SV=1 && PF12819:Malectin-like domain|PF07714:Protein tyrosine kinase"]
[1,3131239,3131424,186,50,0.19836586419159,0.065402311878628,0.132963552312962,300.601925481777,"CHH","1:3131165:3133165","CGI_shore"]
[1,3131973,3132030,58,24,0.0807043640974297,0.019439804139027,0.0612645599584028,123.954681964741,"CHH","1:3131165:3133165","CGI_shore"]
[1,3180775,3180906,132,27,0.118226768233137,0.0293751681537238,0.0888516000794136,131.846130641197,"CHH","Os01g0160700","promoter","Os01g0160700","Leucine-rich repeat, N-terminal domain containing protein && sp|Q9C637|RLP6_ARATH Receptor-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=RLP6 PE=3 SV=1 && PF08263:Leucine rich repeat N-terminal domain"]
[1,3180775,3180906,132,27,0.118226768233137,0.0293751681537238,0.0888516000794136,131.846130641197,"CHH","1:3180228:3182228","CGI_shore"]
[1,3202615,3202713,99,9,0.763517791634981,0.439700020825497,0.323817770809484,33.6424792602276,"CHG","1:3201485:3203486","CGI_shore"]
[1,3202615,3202713,99,9,0.763517791634981,0.439700020825497,0.323817770809484,33.6424792602276,"CHG","Os01g0161000","intron","Os01g0161000","Hypothetical conserved gene && - && PF08263:Leucine rich repeat N-terminal domain"]
[1,3230173,3230496,324,96,0.135553821193653,0.0643485934251128,0.0712052277685404,442.796047306431,"CHH","1:3228521:3230522","CGI_shore"]
[1,3230173,3230496,324,96,0.135553821193653,0.0643485934251128,0.0712052277685404,442.796047306431,"CHH","1:3229634:3230183","CGI"]
[1,3230173,3230496,324,96,0.135553821193653,0.0643485934251128,0.0712052277685404,442.796047306431,"CHH","1:3230183:3232184","CGI_shore"]
[1,3237254,3237405,152,37,0.545913078696629,0.379194026859338,0.166719051837291,181.499663549419,"CHH","1:3235725:3237726","CGI_shore"]
[1,3237254,3237405,152,37,0.545913078696629,0.379194026859338,0.166719051837291,181.499663549419,"CHH","1:3236044:3238044","CGI_shore"]
[1,3245559,3245646,88,27,0.40524551052544,0.195901250707547,0.209344259817893,122.600603384186,"CHH","Os01g0162001","promoter","Os01g0162001","Hypothetical gene && - && -"]
[1,3245559,3245646,88,27,0.40524551052544,0.195901250707547,0.209344259817893,122.600603384186,"CHH","Os01g0162101","promoter","Os01g0162101","Similar to MATE && - && -"]
[1,3245559,3245646,88,27,0.40524551052544,0.195901250707547,0.209344259817893,122.600603384186,"CHH","1:3245448:3247449","CGI_shore"]
[1,3368826,3368929,104,30,0.233716627442521,0.138847557579018,0.0948690698635024,131.520481905195,"CHH","Os01g0165200","promoter","Os01g0165200","Kelch-type beta propeller domain containing protein && sp|Q5JZR1|NRPA_SOYBN DCD domain-containing protein NRP-A OS=Glycine max OX=3847 GN=NRP-A PE=2 SV=1 && PF01344:Kelch motif|PF10539:Development and cell death domain"]
[1,3368826,3368929,104,30,0.233716627442521,0.138847557579018,0.0948690698635024,131.520481905195,"CHH","1:3368473:3370474","CGI_shore"]
[1,3370265,3370320,56,18,0.070798464009583,0.0172747820077995,0.0535236820017835,79.7139773791188,"CHH","1:3368473:3370474","CGI_shore"]
[1,3431420,3431515,96,15,0.226474691579103,0.0695305716668149,0.156944119912288,59.9935897238656,"CG","1:3429330:3431951","CGI"]
[1,3431420,3431515,96,15,0.226474691579103,0.0695305716668149,0.156944119912288,59.9935897238656,"CG","Os01g0166800","promoter","Os01g0166800","Similar to ETG1 (E2F TARGET GENE 1) && sp|Q501D5|MCMBP_ARATH Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana OX=3702 GN=ETG1 PE=1 SV=1 && PF09739:Mini-chromosome maintenance replisome factor"]
[1,3431420,3431515,96,15,0.226474691579103,0.0695305716668149,0.156944119912288,59.9935897238656,"CG","Os01g0167100","promoter","Os01g0167100","Hypothetical protein && sp|Q5MR23|9DC3_SOLPI Receptor-like protein 9DC3 OS=Solanum pimpinellifolium OX=4084 GN=9DC3 PE=3 SV=1 && -"]
[1,3436474,3436587,114,24,0.396863247250284,0.194269680047902,0.202593567202382,149.232330317882,"CHH","1:3435219:3437219","CGI_shore"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3440745:3440991","CGI"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3438744:3440744","CGI_shore"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3439376:3441376","CGI_shore"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","ENSRNA049471191","promoter","MIR2907","microRNA MIR2907 && - && -"]
[1,3440722,3440929,208,65,0.18679199287662,0.0434370766968308,0.143354916179789,349.654904946058,"CHH","1:3440089:3442090","CGI_shore"]
[1,3443765,3443960,196,47,0.168655540779205,0.0491251283702142,0.119530412408991,274.257619877859,"CHH","1:3442304:3444305","CGI_shore"]
[1,3443765,3443960,196,47,0.168655540779205,0.0491251283702142,0.119530412408991,274.257619877859,"CHH","Os01g0167400","promoter","Os01g0167400","Similar to Protein synthesis inhibitor II (EC 3.2.2.22) (Ribosome-inactivating protein II) (rRNA N-glycosidase) && sp|P04399|RIP2_HORVU Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 && PF00161:Ribosome inactivating protein"]
[1,3443765,3443960,196,47,0.168655540779205,0.0491251283702142,0.119530412408991,274.257619877859,"CHH","1:3443431:3445431","CGI_shore"]
[1,3462575,3462687,113,28,0.174312050072582,0.050540817370698,0.123771232701884,159.056207005777,"CHH","Os01g0167700","intron","Os01g0167700","Conserved hypothetical protein && - && -"]
[1,3462575,3462687,113,28,0.174312050072582,0.050540817370698,0.123771232701884,159.056207005777,"CHH","1:3462451:3464451","CGI_shore"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","1:3575938:3577938","CGI_shore"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","1:3575998:3577999","CGI_shore"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","Os01g0169800","utr3","FISH BONE, TRYPTOPHAN AMINOTRANSFERASE 2","Tryptophan aminotransferase, Indole-3-acetic acid (IAA) biosynthesi && sp|Q5VQG8|TAR2_ORYSJ Tryptophan aminotransferase-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR2 PE=1 SV=1 && PF04864:Allinase"]
[1,3577803,3577865,63,20,0.11936202204477,0.024863098512171,0.0944989235325988,107.872666560795,"CHH","Os01g0169800","exon","FISH BONE, TRYPTOPHAN AMINOTRANSFERASE 2","Tryptophan aminotransferase, Indole-3-acetic acid (IAA) biosynthesi && sp|Q5VQG8|TAR2_ORYSJ Tryptophan aminotransferase-related protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR2 PE=1 SV=1 && PF04864:Allinase"]
[1,3636157,3636487,331,101,0.368011614399037,0.157999184595252,0.210012429803785,646.821501577256,"CHH","1:3634209:3636210","CGI_shore"]
[1,3636157,3636487,331,101,0.368011614399037,0.157999184595252,0.210012429803785,646.821501577256,"CHH","Os01g0170500","intron","Os01g0170500","Protein of unknown function DUF239, plant domain containing protein && - && PF03080:Neprosin|PF14365:Neprosin activation peptide"]
[1,3636157,3636487,331,101,0.368011614399037,0.157999184595252,0.210012429803785,646.821501577256,"CHH","1:3636195:3638195","CGI_shore"]
[1,3657554,3657671,118,42,0.393096883259123,0.208362553229894,0.184734330029229,234.589521114768,"CG","1:3657325:3659324","CGI"]
[1,3674460,3674578,119,23,0.193396925970751,9.35274536736771E-3,0.184044180603383,138.290901601876,"CHH","Os01g0171000","promoter","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase, SERK-like gene 5, bri1-associated receptor kinase 1 (BAK1) homologue 4","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) && sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana OX=3702 GN=NIK3 PE=1 SV=1 && PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain|PF00069:Protein kinase domain"]
[1,3674460,3674578,119,23,0.193396925970751,9.35274536736771E-3,0.184044180603383,138.290901601876,"CHH","1:3673179:3675180","CGI_shore"]
[1,3837839,3838145,307,81,0.259153369422463,0.15951971290178,0.0996336565206827,372.210441797224,"CHH","Os01g0174700","promoter","OsPINOID-like","Similar to Akt (Fragment) && sp|Q94E49|PID2_ORYSJ Protein kinase PINOID 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PID2 PE=2 SV=1 && -"]
[1,3837839,3838145,307,81,0.259153369422463,0.15951971290178,0.0996336565206827,372.210441797224,"CHH","1:3837549:3839550","CGI_shore"]
[1,3956983,3957036,54,22,0.0905720234120469,0.0190613506922441,0.0715106727198028,160.183998237383,"CHH","1:3953070:3961889","CGI"]
[1,3956983,3957036,54,22,0.0905720234120469,0.0190613506922441,0.0715106727198028,160.183998237383,"CHH","Os01g0176800","promoter","Os01g0176800","Protein of unknown function DUF2921 domain containing protein && - && PF11145:Protein of unknown function (DUF2921)"]
[1,4262214,4262333,120,32,0.166691667180776,0.0778097415549627,0.088881925625813,149.015656118692,"CHH","1:4261827:4263827","CGI_shore"]
[1,4262214,4262333,120,32,0.166691667180776,0.0778097415549627,0.088881925625813,149.015656118692,"CHH","Os01g0180900","promoter","Paternally Expressed Gene1","2-oxoglutarate and iron-dependent oxygenase, Starch accumulatio && sp|P0DO23|CP2_ARATH 2-oxoglutarate and iron-dependent oxygenase domain-containing protein CP2 OS=Arabidopsis thaliana OX=3702 GN=CP2 PE=1 SV=1 && -"]
[1,4303580,4303736,157,49,0.289456546456028,0.0836631817154921,0.205793364740536,249.584891720398,"CHH","1:4300955:4305062","CGI"]
[1,4345321,4345491,171,48,0.176335857079085,0.0498851675238601,0.126450689555225,233.01204906721,"CHH","1:4345408:4347408","CGI_shore"]
[1,4420303,4420358,56,15,0.43020717303868,0.243123002298388,0.187084170740292,100.243681704652,"CHH","Os01g0183600","promoter","P-450 96E1","Cytochrome P450 family protein && sp|Q9FVS9|C96AF_ARATH Alkane hydroxylase MAH1 OS=Arabidopsis thaliana OX=3702 GN=CYP96A15 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,4420303,4420358,56,15,0.43020717303868,0.243123002298388,0.187084170740292,100.243681704652,"CHH","1:4419402:4421402","CGI_shore"]
[1,4564014,4564189,176,43,0.296393482849268,0.128230460549145,0.168163022300123,224.815988597357,"CHH","1:4563530:4565530","CGI_shore"]
[1,4565125,4565232,108,21,0.232349273904757,0.096680646788807,0.13566862711595,120.555700922226,"CHH","1:4563530:4565530","CGI_shore"]
[1,4565125,4565232,108,21,0.232349273904757,0.096680646788807,0.13566862711595,120.555700922226,"CHH","Os01g0185900","promoter","WRKY GENE 107","Similar to WRKY 1 (Fragment) && sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana OX=3702 GN=WRKY72 PE=2 SV=1 && PF03106:WRKY DNA -binding domain"]
[1,4565125,4565232,108,21,0.232349273904757,0.096680646788807,0.13566862711595,120.555700922226,"CHH","1:4564386:4566386","CGI_shore"]
[1,4616130,4616262,133,31,0.125853509976829,0.0483526825869543,0.0775008273898745,127.938354098768,"CHH","1:4615658:4617659","CGI_shore"]
[1,4616130,4616262,133,31,0.125853509976829,0.0483526825869543,0.0775008273898745,127.938354098768,"CHH","1:4615800:4617800","CGI_shore"]
[1,4619888,4619948,61,11,0.439636602321193,0.213550628342678,0.226085973978515,82.6910608488739,"CHH","1:4618122:4620123","CGI_shore"]
[1,4653728,4653879,152,37,0.186154158426406,0.0350659744714407,0.151088183954965,179.718590866183,"CHH","1:4652156:4654156","CGI_shore"]
[1,4653728,4653879,152,37,0.186154158426406,0.0350659744714407,0.151088183954965,179.718590866183,"CHH","1:4652808:4654809","CGI_shore"]
[1,4691209,4691264,56,16,0.12121479359151,0.0216313093266541,0.0995834842648555,94.3735590753566,"CHH","Os01g0187500","intron","OsWD40-7","WD40 repeat domain containing protein && sp|Q0DYP5|C3H17_ORYSJ Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 && -"]
[1,4725231,4725311,81,19,0.140779110507878,0.0443292577995034,0.0964498527083746,106.242081688026,"CG","1:4724195:4725312","CGI"]
[1,4725231,4725311,81,19,0.140779110507878,0.0443292577995034,0.0964498527083746,106.242081688026,"CG","Os01g0188100","promoter","Os01g0188100","Isopenicillin N synthase family protein && sp|Q84MB6|DIOX2_ARATH Probable 2-oxoglutarate-dependent dioxygenase At3g50210 OS=Arabidopsis thaliana OX=3702 GN=At3g50210 PE=2 SV=1 && PF14226:non-haem dioxygenase in morphine synthesis N-terminal|PF03171:2OG-Fe(II) oxygenase superfamily"]
[1,4753230,4753477,248,82,0.360755930376049,0.179292656638085,0.181463273737964,601.695480641944,"CHH","1:4751517:4753517","CGI_shore"]
[1,4813604,4813703,100,31,0.251796710548536,0.136016511375563,0.115780199172973,145.51447641981,"CHH","1:4812323:4814324","CGI_shore"]
[1,4829880,4830144,265,59,0.288796573782226,0.134046234434171,0.154750339348055,338.487231865784,"CHH","1:4828567:4830568","CGI_shore"]
[1,4829880,4830144,265,59,0.288796573782226,0.134046234434171,0.154750339348055,338.487231865784,"CHH","1:4829406:4831407","CGI_shore"]
[1,4905141,4905191,51,12,0.603250143430751,0.361867548436196,0.241382594994555,68.5086843111911,"CHH","Os01g0191700","promoter","phosphofructokinase 1","Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein) && sp|Q94AA4|PFKA3_ARATH ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana OX=3702 GN=PFK3 PE=1 SV=1 && PF00365:Phosphofructokinase"]
[1,4905141,4905191,51,12,0.603250143430751,0.361867548436196,0.241382594994555,68.5086843111911,"CHH","1:4904448:4906044","CGI"]
[1,4952160,4952279,120,31,0.49933879737539,0.340148163801491,0.1591906335739,136.507092358508,"CHH","1:4948541:4959059","CGI"]
[1,4952160,4952279,120,31,0.49933879737539,0.340148163801491,0.1591906335739,136.507092358508,"CHH","Os01g0192000","promoter","DELAY OF THE ONSET OF SENESCENCE","CCCH-type zinc finger protein, Negative regulator  for leaf senescenc && sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1 && -"]
[1,4959544,4959613,70,14,0.335195968436827,0.126548164346866,0.208647804089962,69.2800811050388,"CHH","1:4959059:4961060","CGI_shore"]
[1,4960542,4960708,167,43,0.211294115503282,0.10243886902723,0.108855246476053,235.612844198816,"CHH","1:4959059:4961060","CGI_shore"]
[1,4963081,4963164,84,17,0.333584657075747,0.147295482716706,0.186289174359041,107.68126626378,"CHH","1:4961208:4963208","CGI_shore"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193500","promoter","Os01g0193500","Conserved hypothetical protein && sp|Q9M0E1|FBL77_ARATH F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana OX=3702 GN=At4g29420 PE=2 SV=1 && -"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193700","promoter","Os01g0193700","Hypothetical protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && -"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","1:5020165:5022166","CGI_shore"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193600","exon","Os01g0193600","Methyltransferase small domain containing protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && PF05958:tRNA (Uracil-5-)-methyltransferase"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193600","utr3","Os01g0193600","Methyltransferase small domain containing protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && PF05958:tRNA (Uracil-5-)-methyltransferase"]
[1,5021614,5021808,195,59,0.113902145974585,0.0278413138095984,0.0860608321649867,315.120858808089,"CHH","Os01g0193600","intron","Os01g0193600","Methyltransferase small domain containing protein && sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH0687 PE=3 SV=1 && PF05958:tRNA (Uracil-5-)-methyltransferase"]
[1,5176420,5176525,106,53,0.150217532758506,0.0338577361025182,0.116359796655988,298.493242923461,"CHH","1:5175122:5177123","CGI_shore"]
[1,5176420,5176525,106,53,0.150217532758506,0.0338577361025182,0.116359796655988,298.493242923461,"CHH","1:5176418:5178419","CGI_shore"]
[1,5206353,5206432,80,18,0.163297365208874,0.0423276704474756,0.120969694761399,96.3857910159609,"CHH","1:5206198:5208199","CGI_shore"]
[1,5340294,5340404,111,32,0.170271790756622,0.00817055257132884,0.162101238185293,166.476768120474,"CHH","1:5339721:5341722","CGI_shore"]
[1,5377602,5377729,128,33,0.165733797681688,0.0373663798097565,0.128367417871931,170.181080251634,"CHH","1:5376376:5378376","CGI_shore"]
[1,5381815,5381903,89,25,0.16419081822938,0.0129988332428067,0.151191984986574,116.723655347637,"CHH","1:5378377:5388122","CGI"]
[1,5388237,5388301,65,16,0.250288669830242,0.0304577661758164,0.219830903654425,74.6476199401188,"CHH","1:5388122:5390123","CGI_shore"]
[1,5422040,5422114,75,15,0.36937142879775,0.0117876816620229,0.357583747135727,83.9208513682919,"CHH","Os01g0200200","promoter","Os01g0200200","Protein of unknown function DUF1677, plant domain containing protein && - && PF07911:Protein of unknown function (DUF1677)"]
[1,5422040,5422114,75,15,0.36937142879775,0.0117876816620229,0.357583747135727,83.9208513682919,"CHH","1:5422086:5424086","CGI_shore"]
[1,5479093,5479202,110,18,0.194822665952359,0.047513577236453,0.147309088715906,101.327299956137,"CHH","Os01g0200700","intron","METALLOTHIONEIN I-3A","Similar to Metallothionein-like protein type 3 (MT-3) (MWMT3) && sp|A2WLS0|MT3A_ORYSI Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A PE=3 SV=1 && -"]
[1,5479093,5479202,110,18,0.194822665952359,0.047513577236453,0.147309088715906,101.327299956137,"CHH","1:5478982:5480982","CGI_shore"]
[1,5575511,5575720,210,46,0.128379272802353,0.0055316367646105,0.122847636037742,220.185844855148,"CHH","1:5574682:5576683","CGI_shore"]
[1,5597153,5597329,177,59,0.221520017512609,0.119574598337835,0.101945419174774,282.188131934417,"CHH","Os01g0201900","promoter","NOD26 LIKE INTRINSIC PROTEIN 1;5","Conserved hypothetical protein && - && -"]
[1,5597153,5597329,177,59,0.221520017512609,0.119574598337835,0.101945419174774,282.188131934417,"CHH","1:5596314:5598314","CGI_shore"]
[1,5608722,5608849,128,46,0.186382059863808,0.0896969709262393,0.0966850889375689,195.792529928313,"CHH","1:5608632:5610633","CGI_shore"]
[1,5693658,5693812,155,65,0.130673455226143,0.0336034587394305,0.0970699964867129,404.72777270202,"CHH","1:5692774:5694774","CGI_shore"]
[1,5696027,5696153,127,25,0.190137299015262,0.0517291470148156,0.138408152000446,151.551955740333,"CHH","1:5695740:5697741","CGI_shore"]
[1,5711124,5711230,107,31,0.144944255503849,0.0429476809915157,0.101996574512333,169.730975348164,"CHH","1:5710212:5712213","CGI_shore"]
[1,5749862,5750159,298,100,0.153808456981021,0.045742396374739,0.108066060606282,513.16837633883,"CHH","1:5748941:5751546","CGI"]
[1,5752580,5752858,279,73,0.15208995517807,0.0437232121252004,0.10836674305287,402.247692370635,"CHH","1:5751546:5753547","CGI_shore"]
[1,5819606,5819733,128,41,0.451122024496811,0.23052893836512,0.220593086131692,207.693351611942,"CHH","1:5818383:5820449","CGI"]
[1,5819606,5819733,128,41,0.451122024496811,0.23052893836512,0.220593086131692,207.693351611942,"CHH","Os01g0206800","promoter","Os01g0206800","Protein kinase, core domain containing protein && sp|C0LGQ4|MDIS2_ARATH Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 && -"]
[1,5826064,5826346,283,67,0.348109462073812,0.107742087033741,0.240367375040072,386.21373376855,"CHH","1:5825735:5843614","CGI"]
[1,5849171,5849340,170,60,0.251311072365,0.139520636059408,0.111790436305591,325.693545951243,"CHH","1:5848865:5850866","CGI_shore"]
[1,5858770,5858850,81,23,0.0929813551549988,0.0214758936854782,0.0715054614695206,108.49772357229,"CHH","1:5857825:5859826","CGI_shore"]
[1,5903818,5904040,223,61,0.231237409386435,0.070211490951909,0.161025918434526,405.048931634986,"CHH","1:5899417:5909272","CGI"]
[1,5903818,5904040,223,61,0.231237409386435,0.070211490951909,0.161025918434526,405.048931634986,"CHH","Os01g0208700","intron","PEP carboxylase 2, Phosphoenolpyruvate carboxylase 2, phosphoenolpyruvate carboxylase 4, PEPCase 4","Similar to Phosphoenolpyruvate carboxylase (Fragment) && sp|Q84VW9|CAPP3_ARATH Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana OX=3702 GN=PPC3 PE=1 SV=2 && PF00311:Phosphoenolpyruvate carboxylase"]
[1,5917498,5917619,122,42,0.329404774464287,0.144153200720823,0.185251573743463,206.026759724621,"CHH","1:5916014:5918014","CGI_shore"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209566","promoter","Os01g0209566","Hypothetical protein && - && -"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209500","TES","Os01g0209500","Zinc finger, RING-type domain containing protein && sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 && -"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209500","exon","Os01g0209500","Zinc finger, RING-type domain containing protein && sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 && -"]
[1,5945488,5945676,189,37,0.127036876743674,0.0173566393505097,0.109680237393164,228.452203306946,"CHH","Os01g0209500","utr3","Os01g0209500","Zinc finger, RING-type domain containing protein && sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 && -"]
[1,6032967,6033065,99,33,0.0823366758109962,0.0215165971054481,0.0608200787055481,127.846262064585,"CHH","Os01g0210900","promoter","Os01g0210900","Cytochrome P450 family protein && sp|O64697|C7101_ARATH Cytochrome P450 710A1 OS=Arabidopsis thaliana OX=3702 GN=CYP710A1 PE=1 SV=1 && PF00067:Cytochrome P450"]
[1,6032967,6033065,99,33,0.0823366758109962,0.0215165971054481,0.0608200787055481,127.846262064585,"CHH","1:6032899:6034900","CGI_shore"]
[1,6099761,6099986,226,71,0.541793446894485,0.386901207832002,0.154892239062483,379.666779355853,"CHH","1:6098660:6100660","CGI_shore"]
[1,6153246,6153359,114,35,0.0824134523426115,0.0265460513422781,0.0558674010003335,162.037222072849,"CHH","1:6152764:6154765","CGI_shore"]
[1,6153246,6153359,114,35,0.0824134523426115,0.0265460513422781,0.0558674010003335,162.037222072849,"CHH","1:6153238:6153722","CGI"]
[1,6198355,6198586,232,97,0.136164632733341,0.0612696503678035,0.0748949823655372,430.336488093601,"CHH","Os01g0213350","exon","Os01g0213350","Hypothetical gene && - && -"]
[1,6198355,6198586,232,97,0.136164632733341,0.0612696503678035,0.0748949823655372,430.336488093601,"CHH","Os01g0213350","utr3","Os01g0213350","Hypothetical gene && - && -"]
[1,6198355,6198586,232,97,0.136164632733341,0.0612696503678035,0.0748949823655372,430.336488093601,"CHH","1:6197381:6199381","CGI_shore"]
[1,6229195,6229291,97,14,0.16822594036096,0.0304007737551093,0.137825166605851,71.2219166851749,"CHH","1:6228430:6230430","CGI_shore"]
[1,6230573,6230899,327,87,0.197023678041894,0.0566883720567012,0.140335305985193,526.383253781212,"CHH","1:6230431:6230754","CGI"]
[1,6230573,6230899,327,87,0.197023678041894,0.0566883720567012,0.140335305985193,526.383253781212,"CHH","1:6230754:6232755","CGI_shore"]
[1,6230879,6230942,64,11,0.696064218240155,0.328424746743135,0.367639471497019,50.5057696598893,"CG","1:6230754:6232755","CGI_shore"]
[1,6285214,6285284,71,17,0.0981931210539431,0.0203238988328843,0.0778692222210587,88.7156299465274,"CHH","Os01g0214901","promoter","Os01g0214901","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6285214,6285284,71,17,0.0981931210539431,0.0203238988328843,0.0778692222210587,88.7156299465274,"CHH","1:6283286:6285287","CGI_shore"]
[1,6285214,6285284,71,17,0.0981931210539431,0.0203238988328843,0.0778692222210587,88.7156299465274,"CHH","1:6284255:6286255","CGI_shore"]
[1,6323410,6323622,213,49,0.278495572739433,0.165692985176867,0.112802587562566,242.732011906863,"CHH","Os01g0215725","promoter","Os01g0215725","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6331995,6332240,246,54,0.332682325598919,0.0942277385305265,0.238454587068393,374.512775316345,"CHH","1:6330732:6332733","CGI_shore"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","Os01g0216350","intron","Os01g0216350","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","Os01g0216300","intron","GDSL ESTERASE/LIPASE PROTEIN 8","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","1:6354570:6356571","CGI_shore"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","1:6354599:6356599","CGI_shore"]
[1,6355893,6356097,205,67,0.184832046711781,0.0461748831710306,0.13865716354075,455.335303110559,"CHH","1:6355770:6357770","CGI_shore"]
[1,6376154,6376278,125,41,0.173765612054102,0.0377226815531364,0.136042930500965,217.990875340864,"CHH","Os01g0216900","intron","GDSL ESTERASE/LIPASE PROTEIN 11","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6376163,6376237,75,12,0.287482293109668,0.083104037967627,0.204378255142041,56.7462120348371,"CHG","Os01g0216900","intron","GDSL ESTERASE/LIPASE PROTEIN 11","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6408317,6408398,82,43,0.349187412968871,0.237611519422373,0.111575893546498,223.083025544271,"CHH","1:6407809:6409809","CGI_shore"]
[1,6417190,6417321,132,26,0.454492442964495,0.0128960419844645,0.441596400980031,211.974721519495,"CHH","Os01g0217500","intron","DJ-1/PfpI domain containing protein A, DJ-1 protein A","ThiJ/PfpI domain containing protein && sp|Q9MAH3|DJ1B_ARATH Protein DJ-1 homolog B OS=Arabidopsis thaliana OX=3702 GN=DJ1B PE=1 SV=1 && PF01965:DJ-1/PfpI family"]
[1,6417190,6417321,132,26,0.454492442964495,0.0128960419844645,0.441596400980031,211.974721519495,"CHH","1:6416777:6418778","CGI_shore"]
[1,6417190,6417321,132,26,0.454492442964495,0.0128960419844645,0.441596400980031,211.974721519495,"CHH","1:6417010:6419010","CGI_shore"]
[1,6438931,6438991,61,14,0.284346590095899,0.125759444090232,0.158587146005667,69.6514308687699,"CHH","1:6437099:6439099","CGI_shore"]
[1,6440934,6441257,324,99,0.351955667282777,0.132336794847714,0.219618872435062,812.139514312526,"CHH","1:6439325:6441326","CGI_shore"]
[1,6440934,6441257,324,99,0.351955667282777,0.132336794847714,0.219618872435062,812.139514312526,"CHH","1:6440820:6442820","CGI_shore"]
[1,6539683,6539752,70,13,0.398461562161682,0.129622841647388,0.268838720514294,72.2314414641789,"CHH","1:6537550:6544433","CGI"]
[1,6539683,6539752,70,13,0.398461562161682,0.129622841647388,0.268838720514294,72.2314414641789,"CHH","Os01g0219500","promoter","non-specific lipid transfer protein 1.1, lipid transfer protein 1.1, type 1 non-specific lipid transfer protein 1","Plant lipid transfer protein/Par allergen family protein && sp|Q5NAT8|GUN1_ORYSJ Endoglucanase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLU7 PE=2 SV=1 && -"]
[1,7020385,7020482,98,27,0.22898467073084,0.146467501649986,0.0825171690808544,109.474795875379,"CHH","1:7019908:7021909","CGI_shore"]
[1,7089729,7089929,201,51,0.26016498742164,0.0705235567692847,0.189641430652356,315.437076072436,"CHH","1:7089156:7091157","CGI_shore"]
[1,7089729,7089929,201,51,0.26016498742164,0.0705235567692847,0.189641430652356,315.437076072436,"CHH","Os01g0228300","promoter","Os01g0228300","Mpv17/PMP22 family protein && sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis OX=8355 GN=mpv17 PE=2 SV=2 && PF04117:Mpv17 / PMP22 family"]
[1,7089729,7089929,201,51,0.26016498742164,0.0705235567692847,0.189641430652356,315.437076072436,"CHH","1:7089718:7091718","CGI_shore"]
[1,7114302,7114467,166,43,0.171412936483779,0.106009275452756,0.0654036610310222,199.342374837668,"CHH","1:7113557:7115557","CGI_shore"]
[1,7154010,7154271,262,63,0.227856955265467,0.0777416820139103,0.150115273251556,334.053204909802,"CHH","1:7153841:7154149","CGI"]
[1,7154010,7154271,262,63,0.227856955265467,0.0777416820139103,0.150115273251556,334.053204909802,"CHH","1:7154149:7156150","CGI_shore"]
[1,7175212,7175385,174,50,0.414305333313729,0.250438765996488,0.163866567317242,289.693651964459,"CHH","Os01g0229600","promoter","Os01g0229600","Conserved hypothetical protein && - && -"]
[1,7175212,7175385,174,50,0.414305333313729,0.250438765996488,0.163866567317242,289.693651964459,"CHH","Os01g0229500","intron","Os01g0229500","Thioesterase superfamily domain containing protein && - && PF03061:Thioesterase superfamily"]
[1,7175212,7175385,174,50,0.414305333313729,0.250438765996488,0.163866567317242,289.693651964459,"CHH","1:7173598:7186758","CGI"]
[1,7225939,7226092,154,46,0.300691395174537,0.172189494536078,0.128501900638459,220.764684880736,"CHH","Os01g0230200","promoter","basic helix-loop-helix protein 074","Basic helix-loop-helix dimerisation region bHLH domain containing protein && sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis thaliana OX=3702 GN=BHLH68 PE=1 SV=2 && -"]
[1,7231873,7232059,187,41,0.130298028241369,0.00721423695071707,0.123083791290652,227.009155695456,"CHH","1:7231106:7233107","CGI_shore"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","1:7342820:7344820","CGI_shore"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","1:7343772:7345772","CGI_shore"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","Os01g0232500","intron","UBIQUITIN-CONJUGATING ENZYME 42","Ubiquitin-conjugating enzyme/RWD-like domain containing protein && sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana OX=3702 GN=UBC26 PE=2 SV=2 && PF00179:Ubiquitin-conjugating enzyme"]
[1,7344352,7344409,58,22,0.0956990296243175,0.0348522199973601,0.0608468096269574,124.984240930571,"CHH","Os01g0232550","intron","Os01g0232550","Hypothetical conserved gene && sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana OX=3702 GN=UBC26 PE=2 SV=2 && -"]
[1,7398188,7398414,227,96,0.186742649009885,0.0840533869085955,0.10268926210129,429.635351102716,"CHH","1:7397219:7399219","CGI_shore"]
[1,7398188,7398414,227,96,0.186742649009885,0.0840533869085955,0.10268926210129,429.635351102716,"CHH","1:7397815:7399816","CGI_shore"]
[1,7421794,7421873,80,13,0.314063036086913,0.173981960672452,0.140081075414461,53.5816879630555,"CG","1:7421477:7421832","CGI"]
[1,7421794,7421873,80,13,0.314063036086913,0.173981960672452,0.140081075414461,53.5816879630555,"CG","Os01g0234100","exon","Os01g0234100","Transcriptional factor B3 family protein && sp|Q0JP99|Y1341_ORYSJ B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0234100 PE=2 SV=1 && PF02362:B3 DNA binding domain"]
[1,7421794,7421873,80,13,0.314063036086913,0.173981960672452,0.140081075414461,53.5816879630555,"CG","1:7421832:7423833","CGI_shore"]
[1,7469453,7469641,189,61,0.150232911474708,0.0519892441304571,0.0982436673442506,345.746607890358,"CHH","Os01g0235300","promoter","Os01g0235300","SOUL haem-binding protein domain containing protein && - && PF04832:SOUL heme-binding protein"]
[1,7469453,7469641,189,61,0.150232911474708,0.0519892441304571,0.0982436673442506,345.746607890358,"CHH","1:7468714:7470714","CGI_shore"]
[1,7489101,7489296,196,49,0.25024784791829,0.0942011034816289,0.156046744436661,250.318767834122,"CHH","1:7489228:7490003","CGI"]
[1,7489101,7489296,196,49,0.25024784791829,0.0942011034816289,0.156046744436661,250.318767834122,"CHH","1:7487227:7489227","CGI_shore"]
[1,7607504,7607680,177,56,0.121652608524665,0.0108822540121553,0.11077035451251,293.356275619291,"CHH","Os01g0237366","promoter","Os01g0237366","NAD(P)-binding domain containing protein && sp|I1LHU6|IFR_SOYBN Isoflavone reductase OS=Glycine max OX=3847 GN=IFR PE=1 SV=1 && PF05368:NmrA-like family"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","1:7623243:7624520","CGI"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","Os01g0237750","exon","Os01g0237750","Hypothetical conserved gene && sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays OX=4577 GN=IRL PE=2 SV=1 && PF05368:NmrA-like family"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","Os01g0237750","TSS","Os01g0237750","Hypothetical conserved gene && sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays OX=4577 GN=IRL PE=2 SV=1 && PF05368:NmrA-like family"]
[1,7624453,7624504,52,8,0.441431172802157,0.232047361479146,0.209383811323011,41.3665106588405,"CG","Os01g0237750","promoter","Os01g0237750","Hypothetical conserved gene && sp|P52580|IFRH_MAIZE Isoflavone reductase homolog IRL OS=Zea mays OX=4577 GN=IRL PE=2 SV=1 && PF05368:NmrA-like family"]
[1,7669295,7669488,194,74,0.243859837642134,0.127537067734727,0.116322769907407,336.923563765479,"CHH","Os01g0238600","promoter","Os01g0238600","Nucleic acid-binding, OB-fold domain containing protein && sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1 && -"]
[1,7669295,7669488,194,74,0.243859837642134,0.127537067734727,0.116322769907407,336.923563765479,"CHH","1:7634129:7676202","CGI"]
[1,7703212,7703294,83,12,0.602648476325906,0.14188490528379,0.460763571042116,65.4518522396861,"CG","1:7702298:7704299","CGI_shore"]
[1,7715380,7715751,372,103,0.196070625319339,0.068740292133806,0.127330333185533,709.997864972708,"CHH","Os01g0239100","intron","DnaJ domain protein B1","Heat shock protein DnaJ family protein && sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii OX=9601 GN=DNAJB4 PE=2 SV=1 && -"]
[1,7715380,7715751,372,103,0.196070625319339,0.068740292133806,0.127330333185533,709.997864972708,"CHH","Os01g0239150","intron","Os01g0239150","Hypothetical protein && sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii OX=9601 GN=DNAJB4 PE=2 SV=1 && -"]
[1,7839196,7839376,181,60,0.281468313807276,0.139557669355502,0.141910644451774,343.79923820331,"CHH","1:7838168:7840169","CGI_shore"]
[1,7861847,7862044,198,50,0.282298505106282,0.129922656150329,0.152375848955952,290.931480519214,"CHH","Os01g0242500","promoter","Os01g0242500","D-tyrosyl-tRNA(Tyr) deacylase family protein && sp|Q54EY1|DTD_DICDI D-aminoacyl-tRNA deacylase OS=Dictyostelium discoideum OX=44689 GN=dtd PE=3 SV=1 && PF02580:D-Tyr-tRNA(Tyr) deacylase"]
[1,7861847,7862044,198,50,0.282298505106282,0.129922656150329,0.152375848955952,290.931480519214,"CHH","1:7860062:7862063","CGI_shore"]
[1,7921737,7922136,400,90,0.258847529583207,0.10572080917477,0.153126720408437,541.791955097297,"CHH","1:7920340:7922341","CGI_shore"]
[1,7921737,7922136,400,90,0.258847529583207,0.10572080917477,0.153126720408437,541.791955097297,"CHH","1:7922098:7924098","CGI_shore"]
[1,7935129,7935214,86,11,0.841322034466264,0.663655665232878,0.177666369233386,49.0242616533852,"CG","Os01g0243800","promoter","Os01g0243800","Hypothetical conserved gene && - && -"]
[1,7935129,7935214,86,11,0.841322034466264,0.663655665232878,0.177666369233386,49.0242616533852,"CG","1:7933729:7935730","CGI_shore"]
[1,7935129,7935214,86,11,0.841322034466264,0.663655665232878,0.177666369233386,49.0242616533852,"CG","1:7934058:7936058","CGI_shore"]
[1,7951484,7951691,208,72,0.109988499663619,0.0326090421378219,0.0773794575257971,385.073222709173,"CHH","1:7949887:7951887","CGI_shore"]
[1,7965863,7966005,143,32,0.304643951852524,0.155395185177046,0.149248766675478,152.167353482906,"CHH","1:7964262:7966262","CGI_shore"]
[1,7982606,7982767,162,45,0.137286478188702,0.0347540898797796,0.102532388308922,239.649580402844,"CHH","1:7981238:7983238","CGI_shore"]
[1,7982606,7982767,162,45,0.137286478188702,0.0347540898797796,0.102532388308922,239.649580402844,"CHH","1:7981554:7983555","CGI_shore"]
[1,7982606,7982767,162,45,0.137286478188702,0.0347540898797796,0.102532388308922,239.649580402844,"CHH","1:7981927:7983927","CGI_shore"]
[1,7987348,7987411,64,12,0.0858142209823589,0.00947129681008391,0.076342924172275,89.8272098262399,"CHH","1:7986953:7988953","CGI_shore"]
[1,8014630,8014807,178,51,0.231235489084463,0.0187669988661867,0.212468490218276,298.561808848479,"CHH","1:8012691:8014691","CGI_shore"]
[1,8014630,8014807,178,51,0.231235489084463,0.0187669988661867,0.212468490218276,298.561808848479,"CHH","1:8014692:8015244","CGI"]
[1,8144248,8144445,198,53,0.143001344687646,0.0512185650976064,0.0917827795900399,325.37110524911,"CHH","1:8142472:8144473","CGI_shore"]
[1,8201095,8201153,59,23,0.243138929756165,0.14971639674797,0.0934225330081945,100.845762030626,"CG","Os01g0249050","promoter","Os01g0249050","Hypothetical protein && sp|Q4PR53|EXPA9_ORYSJ Expansin-A9 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA9 PE=2 SV=2 && PF01357:Pollen allergen|PF03330:Lytic transglycolase"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","exon","Os01g0249300","Lg106-like family protein && - && -"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","utr5","Os01g0249300","Lg106-like family protein && - && -"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","1:8214787:8215132","CGI"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","promoter","Os01g0249300","Lg106-like family protein && - && -"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","1:8215132:8217133","CGI_shore"]
[1,8215125,8215322,198,46,0.237608089652603,0.112348970389173,0.125259119263429,221.286603068941,"CHH","Os01g0249300","TSS","Os01g0249300","Lg106-like family protein && - && -"]
[1,8216789,8216982,194,61,0.143008461096597,0.0541091194129016,0.0888993416836954,290.162905064961,"CHH","Os01g0249300","promoter","Os01g0249300","Lg106-like family protein && - && -"]
[1,8216789,8216982,194,61,0.143008461096597,0.0541091194129016,0.0888993416836954,290.162905064961,"CHH","1:8215132:8217133","CGI_shore"]
[1,8228234,8228438,205,53,0.140020693823574,0.0264453694886865,0.113575324334888,369.653472629939,"CHH","Os01g0249700","promoter","Os01g0249700","Heavy metal-associated domain, HMA domain containing protein && - && -"]
[1,8228234,8228438,205,53,0.140020693823574,0.0264453694886865,0.113575324334888,369.653472629939,"CHH","1:8227534:8229534","CGI_shore"]
[1,8419734,8419891,158,35,0.318435307106942,0.0530842300448605,0.265351077062082,269.761229046035,"CHH","1:8418919:8420920","CGI_shore"]
[1,8419734,8419891,158,35,0.318435307106942,0.0530842300448605,0.265351077062082,269.761229046035,"CHH","Os01g0254000","promoter","ARF-like protein 1d","Similar to NTGB2 (Fragment) && sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A OS=Arabidopsis thaliana OX=3702 GN=SAR1A PE=2 SV=1 && PF00025:ADP-ribosylation factor family"]
[1,8420457,8420524,68,21,0.319494871198801,0.167094419466219,0.152400451732582,96.0443128365454,"CHH","1:8418919:8420920","CGI_shore"]
[1,8420457,8420524,68,21,0.319494871198801,0.167094419466219,0.152400451732582,96.0443128365454,"CHH","Os01g0254000","promoter","ARF-like protein 1d","Similar to NTGB2 (Fragment) && sp|O04834|SAR1A_ARATH GTP-binding protein SAR1A OS=Arabidopsis thaliana OX=3702 GN=SAR1A PE=2 SV=1 && PF00025:ADP-ribosylation factor family"]
[1,8531580,8531646,67,23,0.347668676469892,0.227094740891015,0.120573935578877,113.285064552452,"CHH","1:8522844:8537222","CGI"]
[1,8537765,8537837,73,20,0.494704462315618,0.278328615378367,0.216375846937252,128.838444787234,"CHH","1:8537222:8539223","CGI_shore"]
[1,8537765,8537837,73,20,0.494704462315618,0.278328615378367,0.216375846937252,128.838444787234,"CHH","Os01g0256300","promoter","Os01g0256300","Conserved hypothetical protein && - && -"]
[1,8570584,8570672,89,23,0.187372421756763,0.0615795728838977,0.125792848872866,131.576209852854,"CHH","Os01g0256800","promoter","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 4","Similar to zinc finger helicase family protein && sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256800 PE=2 SV=1 && PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain"]
[1,8570584,8570672,89,23,0.187372421756763,0.0615795728838977,0.125792848872866,131.576209852854,"CHH","1:8569905:8571906","CGI_shore"]
[1,8612680,8612784,105,34,0.148415576159717,0.0421522109906498,0.106263365169067,153.908911338158,"CHH","1:8612141:8614141","CGI_shore"]
[1,8618259,8618470,212,67,0.114241702663647,0.0510189112297318,0.0632227914339155,271.729540834285,"CHH","1:8618103:8618442","CGI"]
[1,8618259,8618470,212,67,0.114241702663647,0.0510189112297318,0.0632227914339155,271.729540834285,"CHH","1:8618442:8620443","CGI_shore"]
[1,8672007,8672200,194,59,0.346112574402329,0.0801524882182251,0.265960086184104,427.048690431971,"CHH","1:8670586:8672587","CGI_shore"]
[1,8672007,8672200,194,59,0.346112574402329,0.0801524882182251,0.265960086184104,427.048690431971,"CHH","1:8671856:8673856","CGI_shore"]
[1,8674689,8674786,98,12,0.516909325816865,0.0592646723488744,0.457644653467991,79.2273892471445,"CHH","1:8674364:8676365","CGI_shore"]
[1,8676974,8677072,99,18,0.149662754811736,0.0135727490979258,0.13609000571381,89.8482939854853,"CHH","1:8676500:8678500","CGI_shore"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","1:8700621:8700887","CGI"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","1:8700887:8702888","CGI_shore"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","Os01g0259400","promoter","Os01g0259400","Armadillo-type fold domain containing protein && sp|F4JY37|RUK_ARATH Serine/threonine-protein kinase RUNKEL OS=Arabidopsis thaliana OX=3702 GN=RUK PE=1 SV=1 && PF00069:Protein kinase domain"]
[1,8700855,8701074,220,59,0.15561117659115,0.0349964018091538,0.120614774781996,361.035880810096,"CHH","1:8699798:8701799","CGI_shore"]
[1,8714785,8714882,98,29,0.304750493510512,0.182624062800645,0.122126430709867,128.537148217565,"CHH","1:8714776:8717917","CGI"]
[1,8714946,8715002,57,18,0.330162701879009,0.189047699774748,0.141115002104261,83.7622738406901,"CHH","1:8714776:8717917","CGI"]
[1,8715796,8715971,176,51,0.233247617962851,0.103297758746389,0.129949859216462,263.360192878234,"CHH","1:8714776:8717917","CGI"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8749142:8751142","CGI_shore"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8749154:8749547","CGI"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8749547:8751548","CGI_shore"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","Os01g0260500","utr5","Os01g0260500","Hypothetical conserved gene && sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 && -"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","Os01g0260500","exon","Os01g0260500","Hypothetical conserved gene && sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 && -"]
[1,8749459,8749635,177,43,0.142704176984184,0.0196499025487466,0.123054274435437,185.438057029462,"CHH","1:8748565:8750566","CGI_shore"]
[1,8908261,8908424,164,40,0.25800968973248,0.0156588675497155,0.242350822182764,238.064801609298,"CHH","1:8906972:8908973","CGI_shore"]
[1,8908261,8908424,164,40,0.25800968973248,0.0156588675497155,0.242350822182764,238.064801609298,"CHH","1:8907924:8909924","CGI_shore"]
[1,8954811,8954944,134,29,0.358045070494396,0.14445022890983,0.213594841584566,167.469981203093,"CHH","1:8953785:8955786","CGI_shore"]
[1,8954811,8954944,134,29,0.358045070494396,0.14445022890983,0.213594841584566,167.469981203093,"CHH","1:8954355:8956355","CGI_shore"]
[1,9010082,9010191,110,18,0.295606432520086,0.139001127320683,0.156605305199403,109.661610229851,"CHH","Os01g0264700","promoter","Os01g0264700","Cellular retinaldehyde binding/alpha-tocopherol transport family protein && sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis OX=8364 GN=sec14l1 PE=2 SV=1 && -"]
[1,9010082,9010191,110,18,0.295606432520086,0.139001127320683,0.156605305199403,109.661610229851,"CHH","1:9008311:9010312","CGI_shore"]
[1,9037084,9037269,186,48,0.10015845284223,0.0223951626485331,0.0777632901936973,275.666806634654,"CHH","1:9035363:9037364","CGI_shore"]
[1,9041064,9041381,318,115,0.155767975548549,0.0644411842514375,0.0913267912971114,486.092176109501,"CHH","Os01g0265400","exon","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9041064,9041381,318,115,0.155767975548549,0.0644411842514375,0.0913267912971114,486.092176109501,"CHH","Os01g0265400","utr3","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9042341,9042543,203,45,0.116261270734958,0.0221913966350363,0.0940698740999219,202.632240522439,"CHH","Os01g0265400","intron","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9042341,9042543,203,45,0.116261270734958,0.0221913966350363,0.0940698740999219,202.632240522439,"CHH","1:9042350:9044350","CGI_shore"]
[1,9042946,9043004,59,15,0.191700528707455,0.093635423846578,0.0980651048608769,75.1946595671164,"CHH","Os01g0265400","intron","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9042946,9043004,59,15,0.191700528707455,0.093635423846578,0.0980651048608769,75.1946595671164,"CHH","1:9042350:9044350","CGI_shore"]
[1,9043168,9043297,130,44,0.05757088834904,0.0144504545924487,0.0431204337565912,199.744287668512,"CHH","Os01g0265400","intron","Os01g0265400","Conserved hypothetical protein && - && -"]
[1,9043168,9043297,130,44,0.05757088834904,0.0144504545924487,0.0431204337565912,199.744287668512,"CHH","1:9042350:9044350","CGI_shore"]
[1,9123444,9124461,1018,47,0.163160591558842,0.0377335085285083,0.125427083030333,240.856423279376,"CHH","1:9121693:9123694","CGI_shore"]
[1,9221381,9221542,162,64,0.143307147330733,0.0378314370657841,0.105475710264949,412.020556888229,"CHH","1:9220919:9222919","CGI_shore"]
[1,9221381,9221542,162,64,0.143307147330733,0.0378314370657841,0.105475710264949,412.020556888229,"CHH","1:9221123:9221550","CGI"]
[1,9222087,9222301,215,50,0.331364105224211,0.065612552072303,0.265751553151908,330.335325476062,"CHH","1:9220919:9222919","CGI_shore"]
[1,9222087,9222301,215,50,0.331364105224211,0.065612552072303,0.265751553151908,330.335325476062,"CHH","1:9221550:9223551","CGI_shore"]
[1,9249978,9250145,168,32,0.318444493658161,0.04772218996836,0.270722303689801,168.116069784018,"CHH","1:9244812:9255205","CGI"]
[1,9249978,9250145,168,32,0.318444493658161,0.04772218996836,0.270722303689801,168.116069784018,"CHH","Os01g0268600","intron","Os01g0268600","Glycoside hydrolase, family 31 protein && sp|Q9F234|AGL2_BACTQ Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens OX=1425 PE=3 SV=1 && PF01055:Glycosyl hydrolases family 31"]
[1,9258625,9258823,199,55,0.211103152499383,0.0509829124657415,0.160120240033641,240.989195738703,"CHH","1:9257131:9259131","CGI_shore"]
[1,9258625,9258823,199,55,0.211103152499383,0.0509829124657415,0.160120240033641,240.989195738703,"CHH","Os01g0268800","promoter","Rhomboid 2, RHOMBOID 2","Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote domain containing protein && sp|Q9LET3|RBL20_ARATH Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 && PF00627:UBA/TS-N domain|PF01694:Rhomboid family"]
[1,9258625,9258823,199,55,0.211103152499383,0.0509829124657415,0.160120240033641,240.989195738703,"CHH","1:9256937:9258938","CGI_shore"]
[1,9267620,9267805,186,43,0.296836747079811,0.152727286419856,0.144109460659956,231.48834272954,"CHH","Os01g0268900","intron","Os01g0268900","Conserved hypothetical protein && sp|Q8GWA2|MOC1_ARATH Holliday junction resolvase MOC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MOC1 PE=1 SV=1 && -"]
[1,9313560,9313625,66,17,0.324194488650973,0.114405874183634,0.209788614467339,83.6243162017223,"CHH","1:9312129:9314129","CGI_shore"]
[1,9334037,9334229,193,65,0.373530589415018,0.119286044181457,0.254244545233561,372.10467316671,"CHH","1:9332545:9334545","CGI_shore"]
[1,9392177,9392365,189,76,0.290802020129207,0.120369904404164,0.170432115725042,493.35472975894,"CHH","1:9390853:9392853","CGI_shore"]
[1,9393700,9393773,74,16,0.167797652878413,0.0485888329397081,0.119208819938705,85.9545873209504,"CHH","1:9393591:9395592","CGI_shore"]
[1,9604124,9604185,62,13,0.261160855227197,0.136802386455244,0.124358468771953,79.1303264961658,"CHH","1:9603186:9604460","CGI"]
[1,9604265,9604318,54,30,0.232458561766452,0.11468731319908,0.117771248567372,139.259290535849,"CHH","1:9603186:9604460","CGI"]
[1,9640313,9640441,129,34,0.215802513213894,0.0147239104131171,0.201078602800777,168.382934336847,"CHH","Os01g0275600","promoter","ARGONAUTE 4A","Similar to Argonaute 4 protein && sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica OX=39947 GN=AGO4A PE=2 SV=1 && PF16488:Argonaute linker 2 domain|PF08699:Argonaute linker 1 domain|PF02170:PAZ domain|PF02171:Piwi domain|PF16486:N-terminal domain of argonaute"]
[1,9640313,9640441,129,34,0.215802513213894,0.0147239104131171,0.201078602800777,168.382934336847,"CHH","1:9640208:9642209","CGI_shore"]
[1,9640921,9641262,342,120,0.157297026346345,0.0561493641764615,0.101147662169883,646.736534185861,"CHH","1:9640208:9642209","CGI_shore"]
[1,9796236,9796311,76,15,0.293325034161121,0.173780909849475,0.119544124311647,71.6051848046115,"CHH","Os01g0278200","promoter","Os01g0278200","Similar to Ran-binding protein 17 && - && -"]
[1,9796236,9796311,76,15,0.293325034161121,0.173780909849475,0.119544124311647,71.6051848046115,"CHH","1:9796181:9798182","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9947018:9949018","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","Os01g0280000","promoter","Os01g0280000","Similar to Histone mRNA exonuclease 1 && sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1 && PF00929:Exonuclease"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9947978:9949979","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9949019:9950080","CGI"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9950080:9952081","CGI_shore"]
[1,9948874,9950130,1257,50,0.269738607723899,0.0563200137057395,0.213418594018159,278.781203236949,"CHH","1:9950101:9952101","CGI_shore"]
[1,10076767,10076883,117,32,0.124709098542884,0.0210593753481376,0.103649723194747,159.191403831008,"CHH","Os01g0282251","utr5","Os01g0282251","Similar to CAA30375.1 protein && - && -"]
[1,10076767,10076883,117,32,0.124709098542884,0.0210593753481376,0.103649723194747,159.191403831008,"CHH","Os01g0282251","exon","Os01g0282251","Similar to CAA30375.1 protein && - && -"]
[1,10076767,10076883,117,32,0.124709098542884,0.0210593753481376,0.103649723194747,159.191403831008,"CHH","1:10076024:10098664","CGI"]
[1,10147189,10147306,118,43,0.340673368463796,0.230957515096301,0.109715853367495,189.2117216197,"CHH","1:10145925:10147926","CGI_shore"]
[1,10147189,10147306,118,43,0.340673368463796,0.230957515096301,0.109715853367495,189.2117216197,"CHH","1:10146428:10148428","CGI_shore"]
[1,10147189,10147306,118,43,0.340673368463796,0.230957515096301,0.109715853367495,189.2117216197,"CHH","Os01g0283700","promoter","Os01g0283700","Similar to Cinnamoyl-CoA reductase (EC 1.2.1.44) && sp|Q6K9A2|CCR1_ORYSJ Cinnamoyl-CoA reductase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCR1 PE=1 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[1,10282809,10283009,201,64,0.110719581977651,0.0202529088077972,0.0904666731698534,334.809473713166,"CHH","1:10281106:10283107","CGI_shore"]
[1,10282809,10283009,201,64,0.110719581977651,0.0202529088077972,0.0904666731698534,334.809473713166,"CHH","1:10281468:10283468","CGI_shore"]
[1,10282809,10283009,201,64,0.110719581977651,0.0202529088077972,0.0904666731698534,334.809473713166,"CHH","1:10282216:10284217","CGI_shore"]
[1,10290794,10290892,99,31,0.0918482258764319,0.0268525214059211,0.0649957044705108,140.560003610704,"CHH","1:10289358:10292749","CGI"]
[1,10290794,10290892,99,31,0.0918482258764319,0.0268525214059211,0.0649957044705108,140.560003610704,"CHH","Os01g0286600","promoter","Proporphyrinogen oxidase, protoporphyrinogen oxidase 1","Similar to Plastidal protoporphyrinogen oxidase && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && PF01593:Flavin containing amine oxidoreductase"]
[1,10290794,10290892,99,31,0.0918482258764319,0.0268525214059211,0.0649957044705108,140.560003610704,"CHH","Os01g0286500","promoter","Os01g0286500","Conserved hypothetical protein && - && -"]
[1,10307874,10307942,69,18,0.106768308874483,0.0192787690392988,0.0874895398351843,90.6923082413986,"CHH","1:10306080:10308080","CGI_shore"]
[1,10324857,10324970,114,47,0.0970074171361042,0.0375718582290209,0.0594355589070833,222.382142470591,"CHH","1:10323060:10325060","CGI_shore"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10453119:10455119","CGI_shore"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10453769:10454022","CGI"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10451768:10453768","CGI_shore"]
[1,10453681,10453849,169,60,0.0948072605835503,0.0193336660689859,0.0754735945145643,319.034349808607,"CHH","1:10452543:10454543","CGI_shore"]
[1,10504788,10504968,181,41,0.269867288198299,0.118014988565645,0.151852299632654,208.651973640236,"CHH","1:10504306:10504828","CGI"]
[1,10504788,10504968,181,41,0.269867288198299,0.118014988565645,0.151852299632654,208.651973640236,"CHH","1:10504467:10506467","CGI_shore"]
[1,10504788,10504968,181,41,0.269867288198299,0.118014988565645,0.151852299632654,208.651973640236,"CHH","1:10504828:10506829","CGI_shore"]
[1,10507889,10508087,199,72,0.202721998249701,0.0771062745447595,0.125615723704941,351.158191929527,"CHH","Os01g0290600","promoter","Os01g0290600","Similar to isopenicillin N epimerase && sp|Q5JNT6|LCYD2_ORYSJ Putative L-cysteine desulfhydrase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0290600 PE=3 SV=1 && PF00266:Aminotransferase class-V"]
[1,10507889,10508087,199,72,0.202721998249701,0.0771062745447595,0.125615723704941,351.158191929527,"CHH","1:10507035:10509036","CGI_shore"]
[1,10507889,10508087,199,72,0.202721998249701,0.0771062745447595,0.125615723704941,351.158191929527,"CHH","1:10507861:10510452","CGI"]
[1,10654028,10654218,191,49,0.12643350356773,0.0246359007167919,0.101797602850938,320.679806913065,"CHH","Os01g0292900","intron","RICE SQUAMOSA PROMOTER-BINDING-LIKE 1","Similar to Squamosa-promoter binding-like protein 2 && sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL1 PE=2 SV=1 && PF03110:SBP domain"]
[1,10662616,10662676,61,11,0.836556168541458,0.674267743004615,0.162288425536843,42.757530660553,"CG","1:10662576:10663166","CGI"]
[1,10673268,10673470,203,76,0.124582734642249,0.0705386280089605,0.0540441066332886,298.285187793663,"CHH","1:10672364:10674364","CGI_shore"]
[1,10673268,10673470,203,76,0.124582734642249,0.0705386280089605,0.0540441066332886,298.285187793663,"CHH","Os01g0293200","promoter","Os01g0293200","Similar to predicted protein && sp|Q65XL5|WTF1_ORYSJ Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1 && -"]
[1,10701062,10701231,170,28,0.735643156156229,0.423671883595378,0.311971272560851,157.812702563393,"CG","1:10700990:10706115","CGI"]
[1,10701062,10701231,170,28,0.735643156156229,0.423671883595378,0.311971272560851,157.812702563393,"CG","Os01g0293800","exon","Os01g0293800","Hypothetical protein && - && -"]
[1,10719569,10719647,79,6,0.496031956067023,0.261994605632397,0.234037350434626,35.0487715249325,"CHG","1:10718357:10720357","CGI_shore"]
[1,10868304,10868453,150,65,0.0464262912938819,0.00541920797487387,0.041007083319008,307.194959799399,"CHH","1:10851884:10902292","CGI"]
[1,10915989,10916230,242,84,0.288193605722315,0.125595603795275,0.16259800192704,401.813591157903,"CHH","Os01g0297950","promoter","Os01g0297950","Hypothetical protein && sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana OX=3702 GN=At1g09380 PE=2 SV=1 && -"]
[1,10915989,10916230,242,84,0.288193605722315,0.125595603795275,0.16259800192704,401.813591157903,"CHH","1:10914433:10916434","CGI_shore"]
[1,11052253,11052420,168,50,0.275310585980718,0.137819751736864,0.137490834243853,254.02933822806,"CHH","1:11051442:11053442","CGI_shore"]
[1,11052933,11053345,413,100,0.320988228909689,0.142451981330922,0.178536247578767,560.039109285369,"CHH","1:11051442:11053442","CGI_shore"]
[1,11091653,11091792,140,43,0.103202255613362,0.0420776683353818,0.0611245872779797,198.764260675984,"CHH","Os01g0301700","intron","Os01g0301700","Tetratricopeptide-like helical domain containing protein && sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g02370 PE=2 SV=1 && -"]
[1,11091653,11091792,140,43,0.103202255613362,0.0420776683353818,0.0611245872779797,198.764260675984,"CHH","1:11091697:11093697","CGI_shore"]
[1,11191977,11192142,166,49,0.0773869319304801,0.0261235361379522,0.0512633957925279,252.450570805913,"CG","1:11191685:11192143","CGI"]
[1,11191977,11192142,166,49,0.0773869319304801,0.0261235361379522,0.0512633957925279,252.450570805913,"CG","Os01g0302800","exon","Os01g0302800","Conserved hypothetical protein && - && -"]
[1,11208231,11208321,91,32,0.209031598147707,0.061348340841587,0.14768325730612,174.328015042488,"CHH","1:11207963:11209653","CGI"]
[1,11208231,11208321,91,32,0.209031598147707,0.061348340841587,0.14768325730612,174.328015042488,"CHH","Os01g0303100","promoter","Os01g0303100","Similar to Chitinase precursor (EC 3.2.1.17) && sp|P23472|CHLY_HEVBR Hevamine-A OS=Hevea brasiliensis OX=3981 PE=1 SV=2 && PF00704:Glycosyl hydrolases family 18"]
[1,11211067,11211127,61,21,0.0861113247904917,0.0287851958017632,0.0573261289887285,117.866556632755,"CHH","1:11209630:11211630","CGI_shore"]
[1,11211067,11211127,61,21,0.0861113247904917,0.0287851958017632,0.0573261289887285,117.866556632755,"CHH","1:11209653:11211654","CGI_shore"]
[1,11211067,11211127,61,21,0.0861113247904917,0.0287851958017632,0.0573261289887285,117.866556632755,"CHH","Os01g0303200","promoter","Os01g0303200","Conserved hypothetical protein && sp|Q6TEP1|F91A1_DANRE Protein FAM91A1 OS=Danio rerio OX=7955 GN=fam91a1 PE=2 SV=2 && PF14648:FAM91 C-terminus|PF14647:FAM91 N-terminus"]
[1,11340125,11340178,54,16,0.158145025951275,0.0187724642710655,0.139372561680209,118.545911122076,"CHH","1:11338700:11340700","CGI_shore"]
[1,11431274,11431436,163,68,0.241875881951958,0.118484159178661,0.123391722773297,344.918541075082,"CHH","1:11430319:11432112","CGI"]
[1,11431274,11431436,163,68,0.241875881951958,0.118484159178661,0.123391722773297,344.918541075082,"CHH","Os01g0306900","promoter","Os01g0306900","Protein of unknown function DUF789 family protein && - && PF05623:Protein of unknown function (DUF789)"]
[1,11434295,11434508,214,46,0.229409042739839,0.112572159360778,0.116836883379061,227.359046205125,"CHH","1:11434141:11436141","CGI_shore"]
[1,11502814,11502877,64,17,0.382143300704677,0.209350085243996,0.172793215460681,116.415262428979,"CHH","Os01g0307624","utr3","Os01g0307624","Conserved hypothetical protein && - && -"]
[1,11502814,11502877,64,17,0.382143300704677,0.209350085243996,0.172793215460681,116.415262428979,"CHH","Os01g0307624","exon","Os01g0307624","Conserved hypothetical protein && - && -"]
[1,11502814,11502877,64,17,0.382143300704677,0.209350085243996,0.172793215460681,116.415262428979,"CHH","1:11502296:11504297","CGI_shore"]
[1,11524411,11524469,59,21,0.123234456247222,0.0407656051470899,0.0824688511001321,99.5006592456568,"CHH","1:11523044:11525006","CGI"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11558836:11560837","CGI_shore"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11559110:11559481","CGI"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11559481:11561482","CGI_shore"]
[1,11559440,11559622,183,72,0.136910162888543,0.049809411042377,0.0871007518461661,385.78453076112,"CHH","1:11559543:11561543","CGI_shore"]
[1,11645416,11645556,141,52,0.181408976773294,0.0965631474568239,0.08484582931647,215.939321315664,"CHH","1:11645325:11647325","CGI_shore"]
[1,11691287,11691423,137,23,0.362518419511934,0.0373811804307521,0.325137239081182,150.030948411172,"CHH","1:11691038:11693039","CGI_shore"]
[1,11720261,11720324,64,23,0.0862197958501824,0.0422321669039076,0.0439876289462748,123.825116765154,"CHH","1:11713648:11725499","CGI"]
[1,11781346,11781474,129,56,0.130717300675286,0.0400033506952645,0.0907139499800217,297.198144020761,"CHH","1:11781190:11783190","CGI_shore"]
[1,11781346,11781474,129,56,0.130717300675286,0.0400033506952645,0.0907139499800217,297.198144020761,"CHH","1:11779502:11781503","CGI_shore"]
[1,11797715,11797989,275,81,0.735128504321848,0.574786153850438,0.16034235047141,420.646534027608,"CG","1:11792769:11803806","CGI"]
[1,11862949,11863322,374,78,0.301607541904624,0.136719130868105,0.164888411036519,407.149048848451,"CHH","1:11862651:11864652","CGI_shore"]
[1,11862949,11863322,374,78,0.301607541904624,0.136719130868105,0.164888411036519,407.149048848451,"CHH","1:11861836:11863836","CGI_shore"]
[1,12079092,12079199,108,47,0.369879597348455,0.241569724272914,0.128309873075541,214.013119024906,"CHH","1:12078276:12080276","CGI_shore"]
[1,12230381,12230760,380,56,0.322761692041377,0.0995004129838476,0.223261279057529,347.674767004111,"CHH","1:12228843:12230843","CGI_shore"]
[1,12230381,12230760,380,56,0.322761692041377,0.0995004129838476,0.223261279057529,347.674767004111,"CHH","1:12229244:12231245","CGI_shore"]
[1,12230381,12230760,380,56,0.322761692041377,0.0995004129838476,0.223261279057529,347.674767004111,"CHH","1:12230362:12232362","CGI_shore"]
[1,12231043,12231103,61,17,0.252236955066742,0.0733130727504127,0.178923882316329,78.5542341881842,"CG","1:12229244:12231245","CGI_shore"]
[1,12231043,12231103,61,17,0.252236955066742,0.0733130727504127,0.178923882316329,78.5542341881842,"CG","1:12230362:12232362","CGI_shore"]
[1,12231043,12231103,61,17,0.252236955066742,0.0733130727504127,0.178923882316329,78.5542341881842,"CG","1:12230844:12231233","CGI"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","1:12262813:12264813","CGI_shore"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","Os01g0321800","promoter","Os01g0321800","Gas vesicle protein GvpC repeat containing protein && - && PF10187:N-terminal domain of NEFA-interacting nuclear protein NIP30"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","Os01g0321700","promoter","Os01g0321700","Similar to predicted protein && sp|Q05AS9|SC23A_XENTR Protein transport protein Sec23A OS=Xenopus tropicalis OX=8364 GN=sec23a PE=2 SV=1 && PF08033:Sec23/Sec24 beta-sandwich domain|PF04815:Sec23/Sec24 helical domain|PF04810:Sec23/Sec24 zinc finger|PF04811:Sec23/Sec24 trunk domain"]
[1,12264262,12264325,64,17,0.118733796139298,0.00933559129021656,0.109398204849082,96.363900635125,"CHH","1:12263325:12265326","CGI_shore"]
[1,12431275,12431362,88,20,0.0986657261400456,0.00664448357200447,0.0920212425680411,85.6881457284866,"CHH","1:12430360:12431340","CGI"]
[1,12431275,12431362,88,20,0.0986657261400456,0.00664448357200447,0.0920212425680411,85.6881457284866,"CHH","1:12431340:12433341","CGI_shore"]
[1,12526670,12526776,107,31,0.0834222425172473,0.0131291913772318,0.0702930511400155,124.597973888278,"CHH","1:12525820:12527820","CGI_shore"]
[1,12526670,12526776,107,31,0.0834222425172473,0.0131291913772318,0.0702930511400155,124.597973888278,"CHH","1:12526675:12528675","CGI_shore"]
[1,12544807,12544877,71,22,0.164378198179574,0.0291404842999234,0.13523771387965,114.257857026218,"CHH","1:12543139:12545139","CGI_shore"]
[1,12544807,12544877,71,22,0.164378198179574,0.0291404842999234,0.13523771387965,114.257857026218,"CHH","1:12543254:12545255","CGI_shore"]
[1,12554394,12554444,51,20,0.130302053629686,0.0479314470246315,0.0823706066050546,93.4563660901344,"CHH","Os01g0327000","exon","class III peroxidase 14","Similar to Class III peroxidase 14 && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && -"]
[1,12554394,12554444,51,20,0.130302053629686,0.0479314470246315,0.0823706066050546,93.4563660901344,"CHH","Os01g0327000","utr3","class III peroxidase 14","Similar to Class III peroxidase 14 && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && -"]
[1,12554394,12554444,51,20,0.130302053629686,0.0479314470246315,0.0823706066050546,93.4563660901344,"CHH","1:12552521:12554521","CGI_shore"]
[1,12563694,12563764,71,16,0.222024287866021,0.121083703483791,0.100940584382231,82.1027854667904,"CHH","Os01g0327100","promoter","class III peroxidase 15","Haem peroxidase family protein && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12563694,12563764,71,16,0.222024287866021,0.121083703483791,0.100940584382231,82.1027854667904,"CHH","1:12562380:12564380","CGI_shore"]
[1,12565514,12565676,163,58,0.273677861085062,0.169749513323082,0.103928347761979,265.888572502162,"CHH","Os01g0327250","intron","Os01g0327250","Hypothetical protein && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12565514,12565676,163,58,0.273677861085062,0.169749513323082,0.103928347761979,265.888572502162,"CHH","Os01g0327100","intron","class III peroxidase 15","Haem peroxidase family protein && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12565514,12565676,163,58,0.273677861085062,0.169749513323082,0.103928347761979,265.888572502162,"CHH","1:12564600:12566601","CGI_shore"]
[1,12639989,12640160,172,28,0.596740883135465,0.336301216227856,0.260439666907609,157.391642362727,"CG","1:12638458:12640458","CGI_shore"]
[1,12639989,12640160,172,28,0.596740883135465,0.336301216227856,0.260439666907609,157.391642362727,"CG","Os01g0328300","exon","F-box protein 9","Similar to cDNA clone:J033084P10, full insert sequence && - && -"]
[1,12639989,12640160,172,28,0.596740883135465,0.336301216227856,0.260439666907609,157.391642362727,"CG","1:12639866:12640184","CGI"]
[1,12685264,12685462,199,55,0.146366241710788,0.0226082642278773,0.12375797748291,317.321867031017,"CHH","1:12683360:12685361","CGI_shore"]
[1,12685264,12685462,199,55,0.146366241710788,0.0226082642278773,0.12375797748291,317.321867031017,"CHH","Os01g0329000","promoter","Os01g0329000","Phospholipid/glycerol acyltransferase domain containing protein && sp|Q9SYJ2|GPAT3_ARATH Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GPAT3 PE=2 SV=1 && -"]
[1,12685264,12685462,199,55,0.146366241710788,0.0226082642278773,0.12375797748291,317.321867031017,"CHH","1:12683873:12685873","CGI_shore"]
[1,12757432,12757758,327,115,0.155193615033382,0.027328374099133,0.127865240934249,727.598170240172,"CHH","1:12752039:12761858","CGI"]
[1,12758132,12758247,116,20,0.153711557957682,0.00920044366787363,0.144511114289809,120.930312132623,"CHH","1:12752039:12761858","CGI"]
[1,12760362,12760592,231,55,0.436251532417677,0.232056104191592,0.204195428226084,353.375868087552,"CHH","1:12752039:12761858","CGI"]
[1,12809128,12809270,143,22,0.173402155665837,0.0274575477730444,0.145944607892793,124.34824911191,"CHH","1:12808533:12809914","CGI"]
[1,12809128,12809270,143,22,0.173402155665837,0.0274575477730444,0.145944607892793,124.34824911191,"CHH","Os01g0331100","intron","GDSL ESTERASE/LIPASE PROTEIN 16","Similar to Alpha-L-fucosidase 2 && sp|Q9FXB6|LIP4_ARATH GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana OX=3702 GN=LIP4 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,12816062,12816222,161,7,0.59537469974124,0.032100868595105,0.563273831146135,48.7710894985821,"CHG","1:12815389:12817389","CGI_shore"]
[1,12816083,12816269,187,35,0.171707770573017,0.00693671751252343,0.164771053060494,202.682425057057,"CHH","1:12815389:12817389","CGI_shore"]
[1,12881930,12881990,61,20,0.158702801362979,0.091780998716053,0.0669218026469265,94.3476878697863,"CHH","1:12881852:12882450","CGI"]
[1,12881930,12881990,61,20,0.158702801362979,0.091780998716053,0.0669218026469265,94.3476878697863,"CHH","Os01g0332200","intron","GIBBERELLIN 2-OXIDASE 2","GA 2-oxidase2, GA metabolis && sp|Q5ZA21|G2OX2_ORYSJ Gibberellin 2-beta-dioxygenase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GA2OX2 PE=3 SV=1 && PF14226:non-haem dioxygenase in morphine synthesis N-terminal|PF03171:2OG-Fe(II) oxygenase superfamily"]
[1,12891720,12891774,55,14,0.156319201557105,0.0399264635982637,0.116392737958842,70.6482473754468,"CHH","1:12891652:12893653","CGI_shore"]
[1,12904095,12904167,73,21,0.179747741211221,0.0435996215973547,0.136148119613866,131.059141285682,"CHH","1:12904071:12904445","CGI"]
[1,12904095,12904167,73,21,0.179747741211221,0.0435996215973547,0.136148119613866,131.059141285682,"CHH","Os01g0332500","intron","Os01g0332500","Similar to Serine carboxypeptidase II-like protein && sp|Q5W727|SCP26_ORYSJ Serine carboxypeptidase-like 26 OS=Oryza sativa subsp. japonica OX=39947 GN=SCP26 PE=2 SV=1 && PF00450:Serine carboxypeptidase"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","1:12907548:12909548","CGI_shore"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","Os01g0332700","exon","Os01g0332700","Similar to predicted protein && - && -"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","Os01g0332500","intron","Os01g0332500","Similar to Serine carboxypeptidase II-like protein && sp|Q5W727|SCP26_ORYSJ Serine carboxypeptidase-like 26 OS=Oryza sativa subsp. japonica OX=39947 GN=SCP26 PE=2 SV=1 && PF00450:Serine carboxypeptidase"]
[1,12909440,12909558,119,45,0.159367260544582,0.0540094884322357,0.105357772112347,215.820770454995,"CHH","1:12909549:12910714","CGI"]
[1,12911669,12911786,118,49,0.112200775024112,0.0424090883934684,0.0697916866306432,247.345670896732,"CHH","1:12910714:12912715","CGI_shore"]
[1,12911669,12911786,118,49,0.112200775024112,0.0424090883934684,0.0697916866306432,247.345670896732,"CHH","Os01g0332500","intron","Os01g0332500","Similar to Serine carboxypeptidase II-like protein && sp|Q5W727|SCP26_ORYSJ Serine carboxypeptidase-like 26 OS=Oryza sativa subsp. japonica OX=39947 GN=SCP26 PE=2 SV=1 && PF00450:Serine carboxypeptidase"]
[1,12911669,12911786,118,49,0.112200775024112,0.0424090883934684,0.0697916866306432,247.345670896732,"CHH","Os01g0332700","promoter","Os01g0332700","Similar to predicted protein && - && -"]
[1,12932262,12932373,112,38,0.219380869434067,0.140313428380159,0.0790674410539071,170.810344201493,"CHH","1:12930279:12932279","CGI_shore"]
[1,12932262,12932373,112,38,0.219380869434067,0.140313428380159,0.0790674410539071,170.810344201493,"CHH","1:12930694:12932694","CGI_shore"]
[1,12932262,12932373,112,38,0.219380869434067,0.140313428380159,0.0790674410539071,170.810344201493,"CHH","1:12932280:12932484","CGI"]
[1,12933521,12933721,201,66,0.256165787354488,0.14050413350159,0.115661653852898,306.081484707133,"CHH","1:12932484:12934485","CGI_shore"]
[1,12933521,12933721,201,66,0.256165787354488,0.14050413350159,0.115661653852898,306.081484707133,"CHH","1:12932695:12936034","CGI"]
[1,12934016,12934129,114,51,0.235747309986829,0.113828326264871,0.121918983721959,239.763477819272,"CHH","1:12932484:12934485","CGI_shore"]
[1,12934016,12934129,114,51,0.235747309986829,0.113828326264871,0.121918983721959,239.763477819272,"CHH","1:12932695:12936034","CGI"]
[1,12945495,12945606,112,27,0.147393456604277,0.0103501344314743,0.137043322172803,120.287787271313,"CHH","1:12943684:12945684","CGI_shore"]
[1,13000011,13000082,72,15,0.764631855815597,0.508523615920107,0.256108239895491,68.3567465787532,"CG","1:12998913:13001862","CGI"]
[1,13005327,13005377,51,25,0.0910867978278997,0.0401711567184945,0.0509156411094052,113.889947613944,"CHH","1:13004296:13006297","CGI_shore"]
[1,13005436,13005511,76,26,0.0794159901857913,0.0228323721305856,0.0565836180552058,134.22374623696,"CHH","1:13004296:13006297","CGI_shore"]
[1,13042397,13042583,187,39,0.290090706899336,0.0295722171261738,0.260518489773162,217.761861064803,"CHH","1:13042371:13044372","CGI_shore"]
[1,13042397,13042583,187,39,0.290090706899336,0.0295722171261738,0.260518489773162,217.761861064803,"CHH","1:13040834:13042835","CGI_shore"]
[1,13058461,13058575,115,45,0.082770280884947,0.045194088792145,0.037576192092802,183.524557327307,"CHH","1:13056907:13058908","CGI_shore"]
[1,13058461,13058575,115,45,0.082770280884947,0.045194088792145,0.037576192092802,183.524557327307,"CHH","1:13058016:13060017","CGI_shore"]
[1,13201572,13201722,151,35,0.265475189563726,0.0256883933490839,0.239786796214642,216.130587025688,"CHH","Os01g0337160","promoter","Os01g0337160","Conserved hypothetical protein && - && -"]
[1,13201572,13201722,151,35,0.265475189563726,0.0256883933490839,0.239786796214642,216.130587025688,"CHH","1:13199842:13201842","CGI_shore"]
[1,13201572,13201722,151,35,0.265475189563726,0.0256883933490839,0.239786796214642,216.130587025688,"CHH","1:13200883:13202884","CGI_shore"]
[1,13233631,13233749,119,39,0.175002131329436,0.0502633418394198,0.124738789490016,219.82273553721,"CHH","1:13232019:13234019","CGI_shore"]
[1,13233631,13233749,119,39,0.175002131329436,0.0502633418394198,0.124738789490016,219.82273553721,"CHH","1:13232045:13234046","CGI_shore"]
[1,13325565,13325819,255,76,0.203895400787135,0.0533692082801311,0.150526192507004,402.538440313209,"CHH","Os01g0338600","promoter","Os01g0338600","Similar to cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes && - && -"]
[1,13325565,13325819,255,76,0.203895400787135,0.0533692082801311,0.150526192507004,402.538440313209,"CHH","1:13323990:13325991","CGI_shore"]
[1,13325565,13325819,255,76,0.203895400787135,0.0533692082801311,0.150526192507004,402.538440313209,"CHH","1:13324848:13328322","CGI"]
[1,13327423,13327563,141,59,0.177349103339377,0.0951495290234943,0.0821995743158826,269.815376243247,"CHH","1:13324848:13328322","CGI"]
[1,13327756,13327988,233,84,0.147482148855363,0.0542187724022355,0.0932633764531279,378.259466855421,"CHH","1:13324848:13328322","CGI"]
[1,13328511,13328692,182,45,0.118609200306139,0.0270379353178591,0.0915712649882797,260.055723211012,"CHH","1:13328322:13330323","CGI_shore"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","1:13342478:13344479","CGI_shore"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","Os01g0339600","promoter","Os01g0339600","Proteasome assembly chaperone 3 domain containing protein && - && -"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","1:13343077:13345851","CGI"]
[1,13344449,13344612,164,29,0.123497613236231,0.0276991227914235,0.0957984904448079,136.167806422075,"CHH","Os01g0339500","intron","NAC DOMAIN-CONTAINING PROTEIN 30","Similar to No apical meristem protein && - && -"]
[1,13378670,13378976,307,64,0.397674770112278,0.182742249497277,0.214932520615001,357.728476111111,"CHH","1:13377007:13379007","CGI_shore"]
[1,13430991,13431097,107,18,0.480602046679817,0.20630931072253,0.274292735957287,89.4520275013172,"CHG","1:13429863:13431864","CGI_shore"]
[1,13443856,13443927,72,22,0.148868988919088,0.0562465231378107,0.0926224657812774,120.982654697623,"CHH","1:13437036:13445754","CGI"]
[1,13471217,13471309,93,30,0.243097492123107,0.11880255904787,0.124294933075237,156.477867178886,"CHH","1:13467867:13473166","CGI"]
[1,13473701,13473877,177,45,0.277587429066837,0.129868173707242,0.147719255359595,217.824557378587,"CHH","1:13473166:13475167","CGI_shore"]
[1,13537182,13537290,109,43,0.144472051977301,0.0622771337851399,0.0821949181921607,213.545335564524,"CHH","1:13537065:13537310","CGI"]
[1,13599283,13599358,76,21,0.203327074185398,0.0877279988923307,0.115599075293068,99.6810636837833,"CHH","1:13598705:13600705","CGI_shore"]
[1,13607506,13607557,52,16,0.214419569936368,0.0795509151163878,0.13486865481998,80.3757434579893,"CHH","1:13607410:13609410","CGI_shore"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","Os01g0344620","utr3","Os01g0344620","Hypothetical gene && - && -"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","Os01g0344620","exon","Os01g0344620","Hypothetical gene && - && -"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","1:13609521:13611521","CGI_shore"]
[1,13609798,13609859,62,30,0.0618531068672768,0.0177021494229662,0.0441509574443106,134.754771891484,"CHH","1:13609755:13611756","CGI_shore"]
[1,13668968,13669064,97,40,0.102280442089817,0.0485271999986109,0.0537532420912062,174.919638370397,"CHH","1:13668498:13670498","CGI_shore"]
[1,13677808,13677992,185,60,0.130552253092107,0.0627609334209012,0.0677913196712059,295.127946013093,"CHH","1:13673559:13682170","CGI"]
[1,13772498,13772673,176,47,0.158194695545355,0.0751896201822265,0.0830050753631289,210.845463478138,"CHH","1:13771613:13773613","CGI_shore"]
[1,13772498,13772673,176,47,0.158194695545355,0.0751896201822265,0.0830050753631289,210.845463478138,"CHH","1:13771954:13773955","CGI_shore"]
[1,13780621,13780807,187,48,0.224024630317244,0.067642830145172,0.156381800172072,284.006119434064,"CHH","Os01g0346700","promoter","Os01g0346700","Conserved hypothetical protein && - && -"]
[1,13780621,13780807,187,48,0.224024630317244,0.067642830145172,0.156381800172072,284.006119434064,"CHH","1:13779921:13781922","CGI_shore"]
[1,13805843,13805982,140,23,0.160595309125843,0.0145770703800097,0.146018238745834,122.832558045645,"CHH","1:13804073:13806073","CGI_shore"]
[1,13805843,13805982,140,23,0.160595309125843,0.0145770703800097,0.146018238745834,122.832558045645,"CHH","Os01g0347100","promoter","Os01g0347100","Protein of unknown function DUF1399 family protein && - && -"]
[1,13805843,13805982,140,23,0.160595309125843,0.0145770703800097,0.146018238745834,122.832558045645,"CHH","1:13805166:13807167","CGI_shore"]
[1,13811631,13811789,159,54,0.163740566109372,0.068138378150624,0.0956021879587481,290.966154719475,"CHH","Os01g0347200","promoter","Os01g0347200","Conserved hypothetical protein && - && -"]
[1,13844795,13844974,180,46,0.461279208226094,0.255700754293307,0.205578453932787,276.869583472808,"CHH","1:13844712:13846713","CGI_shore"]
[1,13856275,13856372,98,27,0.185868036959505,0.0882150823509258,0.0976529546085789,123.925581917995,"CHH","1:13854318:13856319","CGI_shore"]
[1,13856275,13856372,98,27,0.185868036959505,0.0882150823509258,0.0976529546085789,123.925581917995,"CHH","1:13856102:13858102","CGI_shore"]
[1,13856275,13856372,98,27,0.185868036959505,0.0882150823509258,0.0976529546085789,123.925581917995,"CHH","1:13856153:13858154","CGI_shore"]
[1,13858874,13859084,211,69,0.198789888471772,0.0877713700599112,0.111018518411861,363.250069390557,"CHH","Os01g0348000","promoter","Os01g0348000","Similar to Papain-like cysteine proteinase (Fragment) && - && -"]
[1,13858874,13859084,211,69,0.198789888471772,0.0877713700599112,0.111018518411861,363.250069390557,"CHH","1:13858103:13875888","CGI"]
[1,13884314,13884394,81,27,0.125520264044423,0.0154828183690858,0.110037445675338,181.888835132202,"CHH","1:13883585:13885585","CGI_shore"]
[1,13901321,13901398,78,21,0.069680620739768,0.0213054523906261,0.0483751683491419,115.032831589965,"CHH","1:13900041:13902042","CGI_shore"]
[1,13901321,13901398,78,21,0.069680620739768,0.0213054523906261,0.0483751683491419,115.032831589965,"CHH","Os01g0348800","promoter","Os01g0348800","Similar to Salt-stress induced protein (Salt protein) && sp|A2WPN7|SALT_ORYSI Salt stress-induced protein OS=Oryza sativa subsp. indica OX=39946 GN=SALT PE=1 SV=2 && PF01419:Jacalin-like lectin domain"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","Os01g0349000","exon","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","Os01g0349000","utr5","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","1:13911469:13912790","CGI"]
[1,13912238,13912346,109,15,0.59480974537284,0.34903344001194,0.245776305360899,69.6137016815059,"CHG","1:13912280:13914280","CGI_shore"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","Os01g0349000","exon","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","Os01g0349000","utr5","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","1:13911469:13912790","CGI"]
[1,13912298,13912487,190,60,0.161790491092747,0.049925465739647,0.1118650253531,320.878549166462,"CHH","1:13912280:13914280","CGI_shore"]
[1,13913662,13913786,125,29,0.167450489739676,0.0862647058135247,0.0811857839261509,124.412935395891,"CHH","1:13912280:13914280","CGI_shore"]
[1,13913662,13913786,125,29,0.167450489739676,0.0862647058135247,0.0811857839261509,124.412935395891,"CHH","1:13912790:13914791","CGI_shore"]
[1,13913662,13913786,125,29,0.167450489739676,0.0862647058135247,0.0811857839261509,124.412935395891,"CHH","Os01g0349000","promoter","Os01g0349000","Conserved hypothetical protein && - && -"]
[1,13937734,13937906,173,60,0.1758901446301,0.0941659754922349,0.0817241691378654,287.44641647573,"CHH","1:13937536:13939537","CGI_shore"]
[1,13939301,13939470,170,45,0.299328472536009,0.172693788723007,0.126634683813002,223.954729240925,"CHH","1:13937536:13939537","CGI_shore"]
[1,13939301,13939470,170,45,0.299328472536009,0.172693788723007,0.126634683813002,223.954729240925,"CHH","Os01g0349800","promoter","Os01g0349800","Similar to Cytochrome P450 && sp|F4IK45|C70B2_ARATH Cytochrome P450 709B2 OS=Arabidopsis thaliana OX=3702 GN=CYP709B2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,13940936,13941133,198,57,0.255939084585633,0.138401946242483,0.11753713834315,284.704723755631,"CHH","Os01g0349800","promoter","Os01g0349800","Similar to Cytochrome P450 && sp|F4IK45|C70B2_ARATH Cytochrome P450 709B2 OS=Arabidopsis thaliana OX=3702 GN=CYP709B2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,13940936,13941133,198,57,0.255939084585633,0.138401946242483,0.11753713834315,284.704723755631,"CHH","1:13939499:13941499","CGI_shore"]
[1,13945476,13945746,271,85,0.148502866501933,0.0488600445367357,0.0996428219651976,430.329911576748,"CHH","1:13944413:13946414","CGI_shore"]
[1,13945476,13945746,271,85,0.148502866501933,0.0488600445367357,0.0996428219651976,430.329911576748,"CHH","1:13945220:13947221","CGI_shore"]
[1,13977406,13977486,81,18,0.249829596994082,0.0918183469785466,0.158011250015535,83.2342604251734,"CHH","1:13976032:13978032","CGI_shore"]
[1,14032844,14032938,95,27,0.046067527450961,0.00891294333293664,0.0371545841180244,111.833225284607,"CHH","1:14031887:14033888","CGI_shore"]
[1,14032844,14032938,95,27,0.046067527450961,0.00891294333293664,0.0371545841180244,111.833225284607,"CHH","1:14032648:14034648","CGI_shore"]
[1,14251363,14251563,201,41,0.210117632938831,0.00772734431786815,0.202390288620963,223.730508822997,"CHH","1:14250114:14253136","CGI"]
[1,14251363,14251563,201,41,0.210117632938831,0.00772734431786815,0.202390288620963,223.730508822997,"CHH","Os01g0354700","promoter","Os01g0354700","Pre-mRNA cleavage complex II Clp1 domain containing protein && sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana OX=3702 GN=At5g11010 PE=1 SV=1 && PF16575:mRNA cleavage and polyadenylation factor CLP1 P-loop"]
[1,14253756,14253914,159,32,0.304970202244869,0.133211907034819,0.17175829521005,202.192704729775,"CHH","1:14253136:14255137","CGI_shore"]
[1,14253756,14253914,159,32,0.304970202244869,0.133211907034819,0.17175829521005,202.192704729775,"CHH","Os01g0354700","intron","Os01g0354700","Pre-mRNA cleavage complex II Clp1 domain containing protein && sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana OX=3702 GN=At5g11010 PE=1 SV=1 && PF16575:mRNA cleavage and polyadenylation factor CLP1 P-loop"]
[1,14433092,14433338,247,72,0.272380731352034,0.0465309396650816,0.225849791686952,512.872001693904,"CHH","Os01g0356800","intron","endosperm-specific gene 6","Domain of unknown function DUF3406, chloroplast translocase domain containing protein && sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC159 PE=1 SV=1 && PF04548:AIG1 family|PF11886:Translocase of chloroplast 159/132, membrane anchor domain"]
[1,14458680,14458742,63,15,0.0923182352166974,0.0304207346663721,0.0618975005503253,72.9050515981231,"CHH","Os01g0357400","promoter","ALPHA-AMYLASE 1B","Similar to Alpha-amylase && sp|Q0JMV4|AMYC1_ORYSJ Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica OX=39947 GN=AMY1B PE=2 SV=1 && -"]
[1,14458680,14458742,63,15,0.0923182352166974,0.0304207346663721,0.0618975005503253,72.9050515981231,"CHH","1:14458268:14460268","CGI_shore"]
[1,14470248,14470346,99,25,0.311439400221972,0.143145544829797,0.168293855392176,131.845412191464,"CHH","Os01g0357800","promoter","Os01g0357800","Pentatricopeptide repeat domain containing protein && sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2 && PF13041:PPR repeat family"]
[1,14516526,14516653,128,49,0.331115598030199,0.152436196785874,0.178679401244325,237.1681773976,"CHH","1:14514685:14516685","CGI_shore"]
[1,14516526,14516653,128,49,0.331115598030199,0.152436196785874,0.178679401244325,237.1681773976,"CHH","Os01g0358551","promoter","Os01g0358551","Conserved hypothetical protein && sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS4 PE=2 SV=3 && -"]
[1,14516526,14516653,128,49,0.331115598030199,0.152436196785874,0.178679401244325,237.1681773976,"CHH","1:14515352:14517352","CGI_shore"]
[1,14522113,14522221,109,49,0.156497598966615,0.03145386470784,0.125043734258775,255.156538083375,"CHH","1:14520193:14522145","CGI"]
[1,14522113,14522221,109,49,0.156497598966615,0.03145386470784,0.125043734258775,255.156538083375,"CHH","1:14522145:14524146","CGI_shore"]
[1,14545663,14545766,104,32,0.0704516204890921,2.4119190545362E-3,0.0680397014345559,164.568812364868,"CHH","1:14545500:14547501","CGI_shore"]
[1,14545663,14545766,104,32,0.0704516204890921,2.4119190545362E-3,0.0680397014345559,164.568812364868,"CHH","Os01g0358900","promoter","Os01g0358900","Similar to GDHB glutamate dehydrogenase && sp|A2XMV1|DHE1_ORYSI Glutamate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GDH1 PE=3 SV=2 && -"]
[1,14606401,14606472,72,15,0.206257960709915,0.0669944150168457,0.13926354569307,72.4473596271186,"CHH","1:14604743:14606743","CGI_shore"]
[1,14606401,14606472,72,15,0.206257960709915,0.0669944150168457,0.13926354569307,72.4473596271186,"CHH","1:14605932:14607933","CGI_shore"]
[1,14640986,14641132,147,57,0.17394538596807,0.0311797084268127,0.142765677541258,302.754824900208,"CHH","1:14640587:14642587","CGI_shore"]
[1,14640986,14641132,147,57,0.17394538596807,0.0311797084268127,0.142765677541258,302.754824900208,"CHH","1:14640916:14641504","CGI"]
[1,14658868,14659048,181,59,0.0989288417332858,0.0546347546358424,0.0442940870974434,247.785031078747,"CHH","1:14657876:14659876","CGI_shore"]
[1,14658868,14659048,181,59,0.0989288417332858,0.0546347546358424,0.0442940870974434,247.785031078747,"CHH","1:14658577:14660578","CGI_shore"]
[1,14673356,14673479,124,26,0.175234128378878,0.0795834875914947,0.0956506407873837,123.769112458835,"CHH","1:14672246:14674247","CGI_shore"]
[1,14677998,14678055,58,18,0.50949496083544,0.387024660957846,0.122470299877594,68.3621564920942,"CHH","1:14676370:14678370","CGI_shore"]
[1,14689098,14689156,59,6,0.809534284321613,0.706096908353863,0.10343737596775,21.7668055841041,"CHG","1:14687564:14689565","CGI_shore"]
[1,14689098,14689156,59,6,0.809534284321613,0.706096908353863,0.10343737596775,21.7668055841041,"CHG","1:14688266:14690266","CGI_shore"]
[1,14706630,14706964,335,45,0.367566842995672,0.0386799931446954,0.328886849850977,251.922347497132,"CHH","1:14705862:14707862","CGI_shore"]
[1,14706630,14706964,335,45,0.367566842995672,0.0386799931446954,0.328886849850977,251.922347497132,"CHH","Os01g0361000","promoter","Os01g0361000","Conserved hypothetical protein && - && -"]
[1,14706630,14706964,335,45,0.367566842995672,0.0386799931446954,0.328886849850977,251.922347497132,"CHH","1:14705986:14707987","CGI_shore"]
[1,14748839,14748900,62,24,0.0477978765050799,0.00205942210358161,0.0457384544014983,144.469333821892,"CHH","1:14747521:14749521","CGI_shore"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363600","exon","Os01g0363600","Similar to hydroxyethylthiazole kinase family protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && PF02110:Hydroxyethylthiazole kinase family"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","1:14802880:14804622","CGI"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363500","exon","Os01g0363500","Similar to predicted protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && -"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363500","utr3","Os01g0363500","Similar to predicted protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && -"]
[1,14803108,14803391,284,77,0.503867372744675,0.317591412717008,0.186275960027667,522.386978260238,"CG","Os01g0363600","intron","Os01g0363600","Similar to hydroxyethylthiazole kinase family protein && sp|K7VCB9|THIM_MAIZE Hydroxyethylthiazole kinase OS=Zea mays OX=4577 GN=THIM PE=1 SV=1 && PF02110:Hydroxyethylthiazole kinase family"]
[1,14809068,14809165,98,32,0.403808543667779,0.16239966345683,0.241408880210949,168.435558450024,"CHH","Os01g0363900","promoter","WALL-ASSOCIATED KINASE GENE 5","Similar to HASTY && sp|Q0WP44|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana OX=3702 GN=HST1 PE=1 SV=1 && PF08389:Exportin 1-like protein"]
[1,14809068,14809165,98,32,0.403808543667779,0.16239966345683,0.241408880210949,168.435558450024,"CHH","1:14807788:14809788","CGI_shore"]
[1,14809068,14809165,98,32,0.403808543667779,0.16239966345683,0.241408880210949,168.435558450024,"CHH","1:14808734:14810735","CGI_shore"]
[1,14829633,14829810,178,50,0.295241052300508,0.116378975280697,0.178862077019811,259.795539452424,"CHH","1:14829186:14831187","CGI_shore"]
[1,14829633,14829810,178,50,0.295241052300508,0.116378975280697,0.178862077019811,259.795539452424,"CHH","1:14829754:14831754","CGI_shore"]
[1,14830152,14830325,174,51,0.259385699947773,0.0853104271746478,0.174075272773125,301.575609054748,"CHH","1:14829186:14831187","CGI_shore"]
[1,14830152,14830325,174,51,0.259385699947773,0.0853104271746478,0.174075272773125,301.575609054748,"CHH","1:14829754:14831754","CGI_shore"]
[1,14841113,14841275,163,65,0.0967890091594655,0.0250304893600285,0.071758519799437,337.222850707177,"CHH","1:14840833:14842834","CGI_shore"]
[1,14851069,14851140,72,15,0.139779574591758,0.0224879882663667,0.117291586325391,95.5732769595499,"CHH","1:14846025:14853327","CGI"]
[1,14852827,14852909,83,28,0.173434382428749,0.0231934332529459,0.150240949175803,179.420375099962,"CHH","1:14846025:14853327","CGI"]
[1,14883720,14883838,119,51,0.210068715152882,0.0715753262101556,0.138493388942726,278.383887960662,"CHH","1:14882117:14884292","CGI"]
[1,14884860,14884910,51,17,0.0653057949928007,0.0145695494328106,0.0507362455599901,87.7584639998799,"CHH","1:14884292:14886293","CGI_shore"]
[1,14884860,14884910,51,17,0.0653057949928007,0.0145695494328106,0.0507362455599901,87.7584639998799,"CHH","1:14884755:14886755","CGI_shore"]
[1,14891320,14891395,76,25,0.110800351876102,0.041621637688561,0.0691787141875411,115.024825183938,"CHH","Os01g0364800","promoter","WALL-ASSOCIATED KINASE GENE 7/8","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && -"]
[1,14891320,14891395,76,25,0.110800351876102,0.041621637688561,0.0691787141875411,115.024825183938,"CHH","1:14891001:14891387","CGI"]
[1,14891320,14891395,76,25,0.110800351876102,0.041621637688561,0.0691787141875411,115.024825183938,"CHH","1:14891387:14893388","CGI_shore"]
[1,14921702,14921886,185,42,0.188796893399154,0.0255154370136618,0.163281456385492,290.997661091794,"CHH","1:14921066:14923066","CGI_shore"]
[1,14921702,14921886,185,42,0.188796893399154,0.0255154370136618,0.163281456385492,290.997661091794,"CHH","1:14921660:14923661","CGI_shore"]
[1,14923989,14924079,91,25,0.079174455922024,0.0179302324577884,0.0612442234642356,116.43390563365,"CHH","Os01g0365300","promoter","Os01g0365300","Hypothetical conserved gene && - && PF03080:Neprosin"]
[1,14923989,14924079,91,25,0.079174455922024,0.0179302324577884,0.0612442234642356,116.43390563365,"CHH","1:14923427:14925428","CGI_shore"]
[1,14999791,14999909,119,41,0.265075762609908,0.134257227537235,0.130818535072673,238.400816376814,"CHH","Os01g0367100","promoter","photoassimilate defective1, photoassimilate defective 1","Chloroplast-localized UDP-glucose epimerase (UGE), Galactolipid biosynthesis for chloroplast membranes, Photosynthetic capability and carbon assimilate homeostasi && - && -"]
[1,14999791,14999909,119,41,0.265075762609908,0.134257227537235,0.130818535072673,238.400816376814,"CHH","1:14998082:15000083","CGI_shore"]
[1,15024149,15024266,118,23,0.547872117395445,0.210022195306095,0.33784992208935,128.334133116846,"CHH","1:15023689:15025689","CGI_shore"]
[1,15024149,15024266,118,23,0.547872117395445,0.210022195306095,0.33784992208935,128.334133116846,"CHH","Os01g0367400","promoter","Os01g0367400","Conserved hypothetical protein && - && -"]
[1,15024149,15024266,118,23,0.547872117395445,0.210022195306095,0.33784992208935,128.334133116846,"CHH","1:15023964:15025965","CGI_shore"]
[1,15026174,15026328,155,62,0.256682888033905,0.074388921243112,0.182293966790793,318.662624576383,"CHH","1:15025690:15027551","CGI"]
[1,15026174,15026328,155,62,0.256682888033905,0.074388921243112,0.182293966790793,318.662624576383,"CHH","Os01g0367500","promoter","Os01g0367500","Hypothetical conserved gene && - && -"]
[1,15074721,15074914,194,70,0.143101429216724,0.0377002410973302,0.105401188119394,334.245959884964,"CHH","1:15074653:15076654","CGI_shore"]
[1,15074721,15074914,194,70,0.143101429216724,0.0377002410973302,0.105401188119394,334.245959884964,"CHH","1:15074803:15075020","CGI"]
[1,15074721,15074914,194,70,0.143101429216724,0.0377002410973302,0.105401188119394,334.245959884964,"CHH","1:15072802:15074802","CGI_shore"]
[1,15128882,15128935,54,21,0.180099181786586,0.0701371788535847,0.109962002933001,116.123310908625,"CHH","1:15127284:15129284","CGI_shore"]
[1,15130252,15130326,75,17,0.302238308522448,0.150715071625947,0.151523236896501,78.1091950637644,"CHH","1:15129751:15131752","CGI_shore"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","1:15138936:15140936","CGI_shore"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","Os01g0369000","promoter","Cullin-1, Cullin 1","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress respons && sp|Q5ZC88|CUL1_ORYSJ Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","1:15139612:15141613","CGI_shore"]
[1,15140766,15140826,61,22,0.186079099792062,0.100384633216355,0.0856944665757067,106.717651035304,"CHH","1:15139807:15141807","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15138936:15140936","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","Os01g0369000","promoter","Cullin-1, Cullin 1","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress respons && sp|Q5ZC88|CUL1_ORYSJ Cullin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15139612:15141613","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15139807:15141807","CGI_shore"]
[1,15140931,15141116,186,69,0.235923419467714,0.123443397104788,0.112480022362926,334.365982669301,"CHH","1:15140937:15141184","CGI"]
[1,15142165,15142546,382,138,0.2077735638832,0.103902220944975,0.103871342938226,692.42121639872,"CHH","1:15141184:15143185","CGI_shore"]
[1,15142165,15142546,382,138,0.2077735638832,0.103902220944975,0.103871342938226,692.42121639872,"CHH","1:15141808:15142188","CGI"]
[1,15142165,15142546,382,138,0.2077735638832,0.103902220944975,0.103871342938226,692.42121639872,"CHH","1:15142188:15144189","CGI_shore"]
[1,15149062,15149251,190,67,0.237005149793868,0.120586573326807,0.116418576467061,383.398403650446,"CHH","Os01g0369200","intron","Os01g0369200","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress response, Cold stress respons && sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15158585,15158729,145,28,0.868565134164569,0.604276289425382,0.264288844739186,132.189171397981,"CG","Os01g0369300","promoter","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 3","Potassium uptake protein, kup domain containing protein && sp|Q5ZC87|HAK3_ORYSJ Probable potassium transporter 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK3 PE=2 SV=1 && PF02705:K+ potassium transporter"]
[1,15158585,15158729,145,28,0.868565134164569,0.604276289425382,0.264288844739186,132.189171397981,"CG","Os01g0369500","promoter","Os01g0369500","C2 calcium-dependent membrane targeting domain containing protein && sp|O04023|SRC2_ARATH Protein SRC2 homolog OS=Arabidopsis thaliana OX=3702 GN=SRC2 PE=1 SV=1 && PF00168:C2 domain"]
[1,15158585,15158729,145,28,0.868565134164569,0.604276289425382,0.264288844739186,132.189171397981,"CG","1:15152519:15162358","CGI"]
[1,15168830,15168882,53,21,0.090701835709178,0.0349503273580347,0.0557515083511433,97.8461378575382,"CHH","1:15167224:15169224","CGI_shore"]
[1,15168830,15168882,53,21,0.090701835709178,0.0349503273580347,0.0557515083511433,97.8461378575382,"CHH","1:15168124:15170124","CGI_shore"]
[1,15168830,15168882,53,21,0.090701835709178,0.0349503273580347,0.0557515083511433,97.8461378575382,"CHH","Os01g0369800","promoter","Os01g0369800","Hypothetical protein && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain"]
[1,15266924,15267062,139,38,0.213424096254701,0.0363220204843958,0.177102075770305,230.705583077154,"CHH","1:15265241:15267242","CGI_shore"]
[1,15277748,15277828,81,23,0.143086163726459,0.0111289365273797,0.131957227199079,130.020548549416,"CHH","1:15276591:15278591","CGI_shore"]
[1,15277748,15277828,81,23,0.143086163726459,0.0111289365273797,0.131957227199079,130.020548549416,"CHH","1:15276651:15278652","CGI_shore"]
[1,15277972,15278144,173,46,0.138593301185067,0.0173128938764193,0.121280407308648,241.975147420081,"CHH","1:15276591:15278591","CGI_shore"]
[1,15277972,15278144,173,46,0.138593301185067,0.0173128938764193,0.121280407308648,241.975147420081,"CHH","1:15276651:15278652","CGI_shore"]
[1,15288672,15288798,127,20,0.307585650263028,0.0931582650258086,0.214427385237219,118.188087466537,"CHH","Os01g0371400","promoter","PHI GLUTATHIONE S-TRANSFERASE 9","Similar to Glutathione s-transferase gstf2 && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain|PF02798:Glutathione S-transferase, N-terminal domain"]
[1,15330256,15330331,76,24,0.0506261718169418,0.00858808120748861,0.0420380906094532,110.989526530577,"CHH","Os01g0372100","intron","Os01g0372100","Hypothetical gene && - && -"]
[1,15330256,15330331,76,24,0.0506261718169418,0.00858808120748861,0.0420380906094532,110.989526530577,"CHH","1:15330024:15332024","CGI_shore"]
[1,15386345,15386452,108,40,0.196746250576071,0.0544261980432088,0.142320052532862,224.137444052568,"CHH","1:15385174:15386399","CGI"]
[1,15386345,15386452,108,40,0.196746250576071,0.0544261980432088,0.142320052532862,224.137444052568,"CHH","Os01g0373200","promoter","Os01g0373200","Hypothetical conserved gene && - && -"]
[1,15386345,15386452,108,40,0.196746250576071,0.0544261980432088,0.142320052532862,224.137444052568,"CHH","1:15386399:15388400","CGI_shore"]
[1,15398412,15398497,86,30,0.131837906963055,0.0695064856786364,0.062331421284419,121.063500061841,"CHH","1:15397391:15399392","CGI_shore"]
[1,15469518,15469652,135,34,0.390632727253591,0.170557468387118,0.220075258866474,202.122334714373,"CHH","1:15467623:15469624","CGI_shore"]
[1,15513300,15513459,160,50,0.283194138160532,0.139667375149227,0.143526763011305,249.256530174054,"CHH","1:15511342:15513342","CGI_shore"]
[1,15513300,15513459,160,50,0.283194138160532,0.139667375149227,0.143526763011305,249.256530174054,"CHH","1:15513343:15540713","CGI"]
[1,15514084,15514267,184,75,0.271647471060193,0.149510857180041,0.122136613880151,350.489234139202,"CHH","1:15513343:15540713","CGI"]
[1,15533151,15533204,54,12,0.312438519036191,0.0842106941329453,0.228227824903245,76.6732411470333,"CHH","1:15513343:15540713","CGI"]
[1,15536505,15536568,64,12,0.897584728986161,0.534385267412764,0.363199461573397,55.1873935455353,"CG","1:15513343:15540713","CGI"]
[1,15537219,15537273,55,24,0.111614508294438,0.0452293356711086,0.0663851726233295,115.27724142547,"CHH","1:15513343:15540713","CGI"]
[1,15559198,15559385,188,33,0.131098976345139,0.0213199966121487,0.10977897973299,207.581733844508,"CHH","1:15558687:15560688","CGI_shore"]
[1,15561311,15561371,61,15,0.125173865533164,0.0178419762972154,0.107331889235949,81.456068122786,"CHH","1:15560514:15562514","CGI_shore"]
[1,15561311,15561371,61,15,0.125173865533164,0.0178419762972154,0.107331889235949,81.456068122786,"CHH","Os01g0376600","promoter","Os01g0376600","Hypothetical conserved gene && - && -"]
[1,15688655,15688725,71,20,0.146379172241879,0.0622665172991631,0.0841126549427154,84.4470939637517,"CHH","1:15684778:15703198","CGI"]
[1,15991707,15991792,86,18,0.234868392781819,0.112208433401056,0.122659959380762,82.6936731663893,"CHH","1:15990109:15992109","CGI_shore"]
[1,15991707,15991792,86,18,0.234868392781819,0.112208433401056,0.122659959380762,82.6936731663893,"CHH","1:15990553:15992553","CGI_shore"]
[1,15991707,15991792,86,18,0.234868392781819,0.112208433401056,0.122659959380762,82.6936731663893,"CHH","Os01g0382900","promoter","Os01g0382900","Conserved hypothetical protein && - && -"]
[1,16115177,16115359,183,53,0.159246916213096,0.0510109867790017,0.108235929434095,264.219059884077,"CHH","1:16113528:16115529","CGI_shore"]
[1,16115177,16115359,183,53,0.159246916213096,0.0510109867790017,0.108235929434095,264.219059884077,"CHH","1:16114869:16116111","CGI"]
[1,16140272,16140426,155,51,0.1149406554937,0.043141650280975,0.0717990052127249,241.933021866303,"CHH","Os01g0385000","intron","Os01g0385000","Conserved hypothetical protein && - && -"]
[1,16140272,16140426,155,51,0.1149406554937,0.043141650280975,0.0717990052127249,241.933021866303,"CHH","Os01g0384901","exon","Os01g0384901","Hypothetical gene && - && -"]
[1,16140272,16140426,155,51,0.1149406554937,0.043141650280975,0.0717990052127249,241.933021866303,"CHH","Os01g0384901","utr3","Os01g0384901","Hypothetical gene && - && -"]
[1,16209895,16210013,119,24,0.145930857772652,0.0245644133082925,0.12136644446436,165.004541787641,"CHH","1:16206476:16224007","CGI"]
[1,16264317,16264389,73,16,0.0687689327708298,0.0141057032687339,0.0546632295020958,93.0786402545591,"CHH","1:16264265:16266265","CGI_shore"]
[1,16301847,16302047,201,57,0.192793136757583,0.0489569957530543,0.143836141004529,328.939147291764,"CHH","1:16300059:16302059","CGI_shore"]
[1,16301847,16302047,201,57,0.192793136757583,0.0489569957530543,0.143836141004529,328.939147291764,"CHH","1:16300335:16302336","CGI_shore"]
[1,16357237,16357442,206,65,0.148760844136914,0.0705565280817372,0.0782043160551765,285.630119462664,"CHH","1:16357116:16359117","CGI_shore"]
[1,16363396,16363561,166,46,0.289959159624192,0.121684063335671,0.168275096288521,244.238320644595,"CHH","1:16361604:16365191","CGI"]
[1,16383853,16383993,141,44,0.185434657783948,0.101241670383497,0.0841929874004516,212.655885007188,"CHH","Os01g0388500","promoter","Os01g0388500","Similar to Fibronectin, type III-like fold && sp|F4IN58|PIEZO_ARATH Piezo-type mechanosensitive ion channel homolog OS=Arabidopsis thaliana OX=3702 GN=At2g48060/At2g48040/At2g48050 PE=2 SV=1 && PF12166:Piezo non-specific cation channel, R-Ras-binding domain"]
[1,16393998,16394062,65,22,0.272386713911248,0.135953493277095,0.136433220634153,108.341735534865,"CHH","Os01g0388700","promoter","Os01g0388700","Protein of unknown function DUF679 family protein && sp|Q3E912|DMP10_ARATH Protein DMP10 OS=Arabidopsis thaliana OX=3702 GN=DMP10 PE=2 SV=1 && PF05078:Protein of unknown function (DUF679)"]
[1,16393998,16394062,65,22,0.272386713911248,0.135953493277095,0.136433220634153,108.341735534865,"CHH","1:16393807:16395808","CGI_shore"]
[1,16417277,16417353,77,26,0.113459334493008,0.0455155197901091,0.067943814702899,129.767448623497,"CHH","1:16417050:16417477","CGI"]
[1,16417277,16417353,77,26,0.113459334493008,0.0455155197901091,0.067943814702899,129.767448623497,"CHH","1:16415827:16417828","CGI_shore"]
[1,16417277,16417353,77,26,0.113459334493008,0.0455155197901091,0.067943814702899,129.767448623497,"CHH","1:16416223:16418223","CGI_shore"]
[1,16433899,16433986,88,20,0.230112897750733,0.11602123244563,0.114091665305103,91.853314411937,"CHH","1:16433494:16435495","CGI_shore"]
[1,16433899,16433986,88,20,0.230112897750733,0.11602123244563,0.114091665305103,91.853314411937,"CHH","Os01g0389700","promoter","Os01g0389700","Protein of unknown function DUF679 family protein && sp|Q9STW3|DMP3_ARATH Protein DMP3 OS=Arabidopsis thaliana OX=3702 GN=DMP3 PE=2 SV=1 && PF05078:Protein of unknown function (DUF679)"]
[1,16433899,16433986,88,20,0.230112897750733,0.11602123244563,0.114091665305103,91.853314411937,"CHH","1:16433896:16435896","CGI_shore"]
[1,16442101,16442184,84,33,0.0784858226281113,0.0221448943976337,0.0563409282304776,149.40114028945,"CHH","1:16441233:16443233","CGI_shore"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390400","promoter","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390300","promoter","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","1:16478989:16481147","CGI"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390300","exon","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479616,16479808,193,40,0.74879441050589,0.463782144121722,0.285012266384168,247.276335395594,"CG","Os01g0390300","utr5","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390400","promoter","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","promoter","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","1:16478989:16481147","CGI"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","exon","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","utr5","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16479653,16479819,167,27,0.481708895067149,0.181652350776676,0.300056544290474,136.946222829242,"CHG","Os01g0390300","TSS","Os01g0390300","Nucleic acid-binding, OB-fold domain containing protein && sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana OX=3702 GN=FRS4 PE=2 SV=2 && -"]
[1,16485527,16485638,112,22,0.104524557764715,0.0281737398661056,0.0763508178986091,133.048657061917,"CHH","Os01g0390400","intron","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16485730,16485852,123,13,0.320807458297316,0.108323546449698,0.212483911847618,59.2675331071681,"CHG","Os01g0390400","intron","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16485730,16485852,123,13,0.320807458297316,0.108323546449698,0.212483911847618,59.2675331071681,"CHG","1:16485781:16487781","CGI_shore"]
[1,16487849,16487925,77,24,0.290320454117213,0.146098638039347,0.144221816077866,117.086688871716,"CHH","Os01g0390400","intron","Os01g0390400","Similar to Met-10+ like family protein && sp|Q6NQ64|TRM52_ARATH tRNA (guanine(37)-N1)-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=At4g27340 PE=2 SV=1 && PF02475:Met-10+ like-protein"]
[1,16487849,16487925,77,24,0.290320454117213,0.146098638039347,0.144221816077866,117.086688871716,"CHH","1:16487782:16488506","CGI"]
[1,16520268,16520323,56,13,0.193888166516746,0.028565014871804,0.165323151644942,75.4859354684947,"CHH","Os01g0390900","promoter","Protein phosphatase 6","Similar to Dual-specificity protein phosphatase-like protein && sp|Q9ZR37|DUS1_ARATH Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana OX=3702 GN=DSPTP1 PE=1 SV=1 && -"]
[1,16520268,16520323,56,13,0.193888166516746,0.028565014871804,0.165323151644942,75.4859354684947,"CHH","1:16518671:16520672","CGI_shore"]
[1,16520268,16520323,56,13,0.193888166516746,0.028565014871804,0.165323151644942,75.4859354684947,"CHH","1:16519768:16521768","CGI_shore"]
[1,16573497,16573747,251,80,0.349321603247312,0.16717239439045,0.182149208856862,523.259748329487,"CHH","1:16572116:16589683","CGI"]
[1,16588950,16589037,88,35,0.139186582390561,0.0170286172718268,0.122157965118735,171.986502513531,"CHH","Os01g0391500","utr5","Os01g0391500","Hypothetical conserved gene && sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g31810 PE=1 SV=1 && -"]
[1,16588950,16589037,88,35,0.139186582390561,0.0170286172718268,0.122157965118735,171.986502513531,"CHH","Os01g0391500","exon","Os01g0391500","Hypothetical conserved gene && sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g31810 PE=1 SV=1 && -"]
[1,16588950,16589037,88,35,0.139186582390561,0.0170286172718268,0.122157965118735,171.986502513531,"CHH","1:16572116:16589683","CGI"]
[1,16605674,16605736,63,15,0.686456629981668,0.531149333926189,0.155307296055479,57.1149719558187,"CHG","1:16604007:16606007","CGI_shore"]
[1,16684037,16684091,55,13,0.305902856474056,0.173128468846467,0.13277438762759,57.8355364803624,"CG","1:16682649:16684650","CGI_shore"]
[1,16684037,16684091,55,13,0.305902856474056,0.173128468846467,0.13277438762759,57.8355364803624,"CG","1:16684007:16684982","CGI"]
[1,16688368,16688442,75,13,0.107635520902879,0.0389256898106618,0.0687098310922173,73.1499214528294,"CHH","1:16686478:16688478","CGI_shore"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","Os01g0392600","utr5","Os01g0392600","Conserved hypothetical protein && - && -"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","Os01g0392600","exon","Os01g0392600","Conserved hypothetical protein && - && -"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","1:16697589:16699030","CGI"]
[1,16698382,16698527,146,59,0.214879838641949,0.0405539028944376,0.174325935747512,293.531618761429,"CHH","Os01g0392600","intron","Os01g0392600","Conserved hypothetical protein && - && -"]
[1,16963350,16963414,65,25,0.0588792400090455,0.0228562572419311,0.0360229827671143,104.062213253622,"CHH","1:16961794:16963794","CGI_shore"]
[1,16966909,16967011,103,25,0.0551036159110404,0.0211462747020587,0.0339573412089817,106.399997693689,"CHH","1:16965677:16967677","CGI_shore"]
[1,16966909,16967011,103,25,0.0551036159110404,0.0211462747020587,0.0339573412089817,106.399997693689,"CHH","1:16966094:16968095","CGI_shore"]
[1,16966909,16967011,103,25,0.0551036159110404,0.0211462747020587,0.0339573412089817,106.399997693689,"CHH","1:16966862:16968863","CGI_shore"]
[1,16972072,16972209,138,38,0.0710646325933231,0.0299196191945598,0.0411450133987633,146.432550982558,"CHH","1:16970213:16972213","CGI_shore"]
[1,16972072,16972209,138,38,0.0710646325933231,0.0299196191945598,0.0411450133987633,146.432550982558,"CHH","1:16970361:16972362","CGI_shore"]
[1,16972072,16972209,138,38,0.0710646325933231,0.0299196191945598,0.0411450133987633,146.432550982558,"CHH","1:16971959:16973960","CGI_shore"]
[1,16986951,16987052,102,6,0.595288171835497,0.111404212922024,0.483883958913473,30.4873511600954,"CHG","1:16986157:16988157","CGI_shore"]
[1,16992406,16992527,122,47,0.139923903527439,0.0511217869758041,0.0888021165516345,217.95570115729,"CHH","1:16992269:16992648","CGI"]
[1,16992406,16992527,122,47,0.139923903527439,0.0511217869758041,0.0888021165516345,217.95570115729,"CHH","1:16992427:16994427","CGI_shore"]
[1,17009566,17009626,61,32,0.103174859847232,0.0502129700630501,0.0529618897841818,148.897191852006,"CHH","1:17008761:17010761","CGI_shore"]
[1,17044401,17044582,182,66,0.196351848686195,0.0289319027986902,0.167419945887505,394.425088560697,"CHH","1:17042228:17044447","CGI"]
[1,17044401,17044582,182,66,0.196351848686195,0.0289319027986902,0.167419945887505,394.425088560697,"CHH","1:17044447:17046448","CGI_shore"]
[1,17158858,17159015,158,49,0.225950570586806,0.0916271253882918,0.134323445198514,232.262398914738,"CHH","1:17157021:17159021","CGI_shore"]
[1,17158858,17159015,158,49,0.225950570586806,0.0916271253882918,0.134323445198514,232.262398914738,"CHH","1:17157919:17159919","CGI_shore"]
[1,17174176,17174309,134,29,0.662587333832853,0.344740123300436,0.317847210532417,133.173735456055,"CHG","1:17173917:17176064","CGI"]
[1,17177428,17177664,237,78,0.264074714385649,0.0950353503724324,0.169039364013217,483.322554559474,"CG","1:17176064:17178065","CGI_shore"]
[1,17177428,17177664,237,78,0.264074714385649,0.0950353503724324,0.169039364013217,483.322554559474,"CG","1:17177419:17177881","CGI"]
[1,17229484,17229593,110,14,0.337127091429082,0.0092151602964072,0.327911931132674,95.4889614512886,"CHH","1:17228777:17230777","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17237869:17239870","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238281:17240282","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238296:17240296","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238693:17240694","CGI_shore"]
[1,17239100,17239162,63,18,0.121458765595453,0.0419542395461241,0.0795045260493286,79.7976741250694,"CHH","1:17238907:17239255","CGI"]
[1,17290465,17290584,120,58,0.09688751497559,0.0387398302912028,0.0581476846843872,279.768553205889,"CHH","1:17290145:17292146","CGI_shore"]
[1,17290465,17290584,120,58,0.09688751497559,0.0387398302912028,0.0581476846843872,279.768553205889,"CHH","1:17290377:17292377","CGI_shore"]
[1,17316816,17316878,63,15,0.0958742020182144,0.029434856685038,0.0664393453331765,87.3555833544641,"CHH","Os01g0501000","intron","Mediator complex protein OsMED9, Mediator 9_1","Conserved hypothetical protein && sp|Q8RWA2|MED9_ARATH Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1 && -"]
[1,17316816,17316878,63,15,0.0958742020182144,0.029434856685038,0.0664393453331765,87.3555833544641,"CHH","1:17311367:17318369","CGI"]
[1,17316816,17316878,63,15,0.0958742020182144,0.029434856685038,0.0664393453331765,87.3555833544641,"CHH","1:17316585:17318585","CGI_shore"]
[1,17419946,17420050,105,23,0.319469530700822,0.122454260032992,0.19701527066783,129.744375715541,"CHH","Os01g0502700","promoter","Os01g0502700","Similar to Histone H2A && sp|A2WQG7|H2A5_ORYSI Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1 && PF16211:C-terminus of histone H2A"]
[1,17419946,17420050,105,23,0.319469530700822,0.122454260032992,0.19701527066783,129.744375715541,"CHH","1:17418331:17420331","CGI_shore"]
[1,17419946,17420050,105,23,0.319469530700822,0.122454260032992,0.19701527066783,129.744375715541,"CHH","1:17419718:17421719","CGI_shore"]
[1,17466403,17466518,116,36,0.227457373787567,0.128698165789188,0.0987592079983794,160.535490682388,"CHH","1:17465582:17467583","CGI_shore"]
[1,17466403,17466518,116,36,0.227457373787567,0.128698165789188,0.0987592079983794,160.535490682388,"CHH","1:17466267:17468268","CGI_shore"]
[1,17466403,17466518,116,36,0.227457373787567,0.128698165789188,0.0987592079983794,160.535490682388,"CHH","Os01g0503400","promoter","NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 6","Similar to (Rice Genome Annotation Project) metal transporter Nramp6 && sp|Q5QN13|NRAM4_ORYSJ Metal transporter Nramp4 OS=Oryza sativa subsp. japonica OX=39947 GN=NRAMP4 PE=2 SV=1 && -"]
[1,17478394,17478548,155,40,0.160319899174886,0.0701873544494693,0.0901325447254171,198.159334469584,"CHH","1:17477154:17479154","CGI_shore"]
[1,17480414,17480577,164,19,0.183950698969038,0.0632149284941984,0.120735770474839,83.4922339536053,"CHH","1:17479337:17481337","CGI_shore"]
[1,17480414,17480577,164,19,0.183950698969038,0.0632149284941984,0.120735770474839,83.4922339536053,"CHH","1:17479629:17481630","CGI_shore"]
[1,17480894,17480948,55,16,0.12867113257614,0.0589043636183421,0.0697667689577983,69.3251207470975,"CHH","1:17479337:17481337","CGI_shore"]
[1,17480894,17480948,55,16,0.12867113257614,0.0589043636183421,0.0697667689577983,69.3251207470975,"CHH","1:17479629:17481630","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17492616:17494616","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17493410:17495411","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17494300:17496301","CGI_shore"]
[1,17494590,17494815,226,89,0.164156969215182,0.0580464572556212,0.106110511959561,529.047178377082,"CHH","1:17494617:17494841","CGI"]
[1,17516190,17516367,178,62,0.0970818744202837,0.0502490733797589,0.0468328010405248,248.976755102209,"CHH","1:17515556:17517556","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17517016:17519016","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17517932:17519933","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17518121:17520121","CGI_shore"]
[1,17518994,17519178,185,53,0.130325607519028,0.0587040387346178,0.0716215687844106,275.066387595422,"CHH","1:17519017:17519433","CGI"]
[1,17520791,17520905,115,39,0.0844116160336673,0.0046387996633515,0.0797728163703158,209.07762631367,"CHH","1:17519433:17521434","CGI_shore"]
[1,17520791,17520905,115,39,0.0844116160336673,0.0046387996633515,0.0797728163703158,209.07762631367,"CHH","1:17520122:17521497","CGI"]
[1,17520803,17520951,149,49,0.166168262448917,0.0650511619333484,0.101117100515568,275.618663278126,"CG","1:17519433:17521434","CGI_shore"]
[1,17520803,17520951,149,49,0.166168262448917,0.0650511619333484,0.101117100515568,275.618663278126,"CG","1:17520122:17521497","CGI"]
[1,17521369,17521464,96,41,0.0666099840684944,0.0225816438512496,0.0440283402172448,209.771185736311,"CHH","1:17519433:17521434","CGI_shore"]
[1,17521369,17521464,96,41,0.0666099840684944,0.0225816438512496,0.0440283402172448,209.771185736311,"CHH","1:17520122:17521497","CGI"]
[1,17549227,17549316,90,9,0.870043994197209,0.52023483470197,0.349809159495239,42.0144532940918,"CG","1:17548815:17550816","CGI_shore"]
[1,17549227,17549316,90,9,0.870043994197209,0.52023483470197,0.349809159495239,42.0144532940918,"CG","1:17549213:17549502","CGI"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","Os01g0505400","promoter","Os01g0505400","Similar to 2-hydroxyphytanoyl-CoA lyase && sp|Q0JMH0|HACL_ORYSJ 2-hydroxyacyl-CoA lyase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0505400 PE=3 SV=3 && PF02775:Thiamine pyrophosphate enzyme, C-terminal TPP binding domain|PF00205:Thiamine pyrophosphate enzyme, central domain|PF02776:Thiamine pyrophosphate enzyme, N-terminal TPP binding domain"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","1:17559147:17561776","CGI"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","Os01g0504950","utr3","Os01g0504950","Hypothetical gene && sp|Q0JMH0|HACL_ORYSJ 2-hydroxyacyl-CoA lyase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0505400 PE=3 SV=3 && PF02775:Thiamine pyrophosphate enzyme, C-terminal TPP binding domain|PF00205:Thiamine pyrophosphate enzyme, central domain|PF02776:Thiamine pyrophosphate enzyme, N-terminal TPP binding domain"]
[1,17559922,17560117,196,46,0.33894876813727,0.177389768998566,0.161558999138704,234.712160956981,"CHH","Os01g0504950","exon","Os01g0504950","Hypothetical gene && sp|Q0JMH0|HACL_ORYSJ 2-hydroxyacyl-CoA lyase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0505400 PE=3 SV=3 && PF02775:Thiamine pyrophosphate enzyme, C-terminal TPP binding domain|PF00205:Thiamine pyrophosphate enzyme, central domain|PF02776:Thiamine pyrophosphate enzyme, N-terminal TPP binding domain"]
[1,17588401,17588470,70,17,0.207016043819784,0.0796010251055616,0.127415018714223,86.3262211903352,"CHH","1:17586669:17588669","CGI_shore"]
[1,17621272,17621445,174,54,0.107696437807184,0.0450240922950296,0.0626723455121539,253.140146881952,"CHH","Os01g0506200","intron","Os01g0506200","Tetratricopeptide-like helical domain containing protein && sp|Q8N0Z6|TTC5_HUMAN Tetratricopeptide repeat protein 5 OS=Homo sapiens OX=9606 GN=TTC5 PE=1 SV=2 && PF16669:Tetratricopeptide repeat protein 5 OB fold domain"]
[1,17644802,17644901,100,27,0.185482702377903,0.0377020467348693,0.147780655643034,145.166492084947,"CHH","1:17642860:17644860","CGI_shore"]
[1,17644802,17644901,100,27,0.185482702377903,0.0377020467348693,0.147780655643034,145.166492084947,"CHH","1:17644861:17646065","CGI"]
[1,17659637,17659693,57,15,0.359767667277644,0.231180012206611,0.128587655071033,75.0515973157781,"CHH","1:17657923:17659923","CGI_shore"]
[1,17659637,17659693,57,15,0.359767667277644,0.231180012206611,0.128587655071033,75.0515973157781,"CHH","1:17658295:17660296","CGI_shore"]
[1,17679709,17679823,115,32,0.167133469527744,0.0559473200654355,0.111186149462309,170.026379494187,"CHH","1:17679353:17681354","CGI_shore"]
[1,17679709,17679823,115,32,0.167133469527744,0.0559473200654355,0.111186149462309,170.026379494187,"CHH","Os01g0507000","promoter","MICRORNA159A","Non-protein coding transcript && - && -"]
[1,17680162,17680260,99,26,0.242721204380594,0.129158827750715,0.113562376629878,116.704964846633,"CHH","1:17679353:17681354","CGI_shore"]
[1,17680162,17680260,99,26,0.242721204380594,0.129158827750715,0.113562376629878,116.704964846633,"CHH","Os01g0507000","promoter","MICRORNA159A","Non-protein coding transcript && - && -"]
[1,17680162,17680260,99,26,0.242721204380594,0.129158827750715,0.113562376629878,116.704964846633,"CHH","ENSRNA049472799","promoter","MIR159","microRNA MIR159 && - && -"]
[1,17721359,17721483,125,42,0.230994598975042,0.105860764470119,0.125133834504923,193.562829079923,"CHH","1:17720186:17722187","CGI_shore"]
[1,17755790,17755890,101,21,0.225549418181515,0.0402092004652848,0.18534021771623,102.165390276063,"CHH","Os01g0508000","promoter","BETA-GLUCOSIDASE 1","Similar to Beta-glucosidase && sp|Q5QMT0|BGL01_ORYSJ Beta-glucosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU1 PE=2 SV=1 && PF00232:Glycosyl hydrolase family 1"]
[1,17755790,17755890,101,21,0.225549418181515,0.0402092004652848,0.18534021771623,102.165390276063,"CHH","1:17755653:17756543","CGI"]
[1,17785879,17785932,54,15,0.18580792229244,0.0765023525231605,0.109305569769279,74.0369829209846,"CHH","1:17785144:17787145","CGI_shore"]
[1,17897107,17897187,81,19,0.365542670091569,0.121955644099132,0.243587025992437,85.9934783505688,"CHH","1:17895719:17897720","CGI_shore"]
[1,17897107,17897187,81,19,0.365542670091569,0.121955644099132,0.243587025992437,85.9934783505688,"CHH","Os01g0509900","intron","Os_F0780, OsFBX9","F-box domain, Skp2-like domain containing protein && - && -"]
[1,17902974,17903053,80,35,0.160937054400021,0.045752815323033,0.115184239076988,166.952546538996,"CHH","1:17900414:17903675","CGI"]
[1,17902974,17903053,80,35,0.160937054400021,0.045752815323033,0.115184239076988,166.952546538996,"CHH","1:17902679:17904679","CGI_shore"]
[1,17902974,17903053,80,35,0.160937054400021,0.045752815323033,0.115184239076988,166.952546538996,"CHH","Os01g0510100","promoter","MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6","MAP kinase kinase 1 && sp|Q5QN75|M2K1_ORYSJ Mitogen-activated protein kinase kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MKK1 PE=1 SV=1 && PF00069:Protein kinase domain"]
[1,17911382,17911508,127,31,0.263087531790101,0.144511151787817,0.118576380002284,139.866664942635,"CHH","1:17909667:17911667","CGI_shore"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","ENSRNA049472720","promoter","MIR2907","microRNA MIR2907 && - && -"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","Os01g0510600","promoter","fluorescent 1","Tetratricopeptide-like helical domain containing protein && sp|Q940U6|FLU_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FLU PE=1 SV=1 && PF13424:Tetratricopeptide repeat"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","1:17951790:17953791","CGI_shore"]
[1,17953079,17953141,63,28,0.207756880089662,0.0969059654190753,0.110850914670587,164.660284557099,"CHH","1:17952573:17954511","CGI"]
[1,18017229,18017434,206,29,0.248348277707359,0.0956652877347298,0.15268298997263,148.442872731763,"CHH","Os01g0511600","promoter","Os01g0511600","Similar to lrgB-like family protein && sp|Q9FVQ4|PLGG1_ARATH Plastidal glycolate/glycerate translocator 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PLGG1 PE=1 SV=1 && -"]
[1,18017229,18017434,206,29,0.248348277707359,0.0956652877347298,0.15268298997263,148.442872731763,"CHH","1:18016903:18018904","CGI_shore"]
[1,18072417,18072481,65,18,0.168773774321545,0.0674972995182423,0.101276474803302,96.8947422900441,"CHH","Os01g0512700","promoter","Os01g0512700","Zinc finger, C2H2 domain containing protein && sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1 && -"]
[1,18072417,18072481,65,18,0.168773774321545,0.0674972995182423,0.101276474803302,96.8947422900441,"CHH","1:18071621:18073622","CGI_shore"]
[1,18072417,18072481,65,18,0.168773774321545,0.0674972995182423,0.101276474803302,96.8947422900441,"CHH","1:18071434:18073434","CGI_shore"]
[1,18133081,18133252,172,57,0.242050600874798,0.127120172583824,0.114930428290975,262.065341454789,"CHH","Os01g0513500","promoter","Os01g0513500","Hypothetical gene && - && -"]
[1,18133406,18133510,105,18,0.221907972651137,0.00674108677598,0.215166885875157,94.1109196031431,"CHH","Os01g0513500","promoter","Os01g0513500","Hypothetical gene && - && -"]
[1,18210155,18210375,221,45,0.773026180877758,0.431166627920333,0.341859552957424,216.455476028574,"CG","1:18209786:18210421","CGI"]
[1,18210381,18210582,202,89,0.232195444923373,0.087933416184417,0.144262028738956,427.47469483662,"CHH","1:18209786:18210421","CGI"]
[1,18210381,18210582,202,89,0.232195444923373,0.087933416184417,0.144262028738956,427.47469483662,"CHH","1:18210421:18212422","CGI_shore"]
[1,18323745,18323943,199,52,0.168748883875061,0.0461509142098107,0.122597969665251,304.813871984311,"CHH","1:18323512:18323863","CGI"]
[1,18323745,18323943,199,52,0.168748883875061,0.0461509142098107,0.122597969665251,304.813871984311,"CHH","1:18323863:18325864","CGI_shore"]
[1,18323745,18323943,199,52,0.168748883875061,0.0461509142098107,0.122597969665251,304.813871984311,"CHH","Os01g0516900","intron","PLEIOTROPIC DRUG RESISTANCE 14","ABC transporter-like domain containing protein && sp|Q8GU89|AB37G_ORYSJ ABC transporter G family member 37 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG37 PE=2 SV=1 && -"]
[1,18324888,18324946,59,22,0.406008265952975,0.265697504604745,0.14031076134823,106.968699271139,"CHH","1:18323863:18325864","CGI_shore"]
[1,18324888,18324946,59,22,0.406008265952975,0.265697504604745,0.14031076134823,106.968699271139,"CHH","Os01g0516900","intron","PLEIOTROPIC DRUG RESISTANCE 14","ABC transporter-like domain containing protein && sp|Q8GU89|AB37G_ORYSJ ABC transporter G family member 37 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG37 PE=2 SV=1 && -"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","1:18598297:18600297","CGI_shore"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","Os01g0521500","promoter","DnaJ domain protein C8","Heat shock protein DnaJ family protein && - && PF12572:Protein of unknown function (DUF3752)|PF00226:DnaJ domain"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","1:18599064:18601064","CGI_shore"]
[1,18600046,18600212,167,68,0.12531109463541,0.0486924941551323,0.0766186004802782,313.798733845841,"CHH","1:18600039:18602040","CGI_shore"]
[1,18616029,18616117,89,37,0.0484459940182965,0.0203610142135461,0.0280849798047504,147.22530516304,"CHH","Os01g0521600","exon","Os01g0521600","Similar to NB-ARC domain containing protein, expressed && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && -"]
[1,18616029,18616117,89,37,0.0484459940182965,0.0203610142135461,0.0280849798047504,147.22530516304,"CHH","Os01g0521600","utr3","Os01g0521600","Similar to NB-ARC domain containing protein, expressed && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && -"]
[1,18616029,18616117,89,37,0.0484459940182965,0.0203610142135461,0.0280849798047504,147.22530516304,"CHH","1:18615268:18617268","CGI_shore"]
[1,18655721,18655966,246,82,0.132478704970866,0.0300012945724968,0.10247741039837,532.885537627867,"CHH","1:18654429:18656429","CGI_shore"]
[1,18655721,18655966,246,82,0.132478704970866,0.0300012945724968,0.10247741039837,532.885537627867,"CHH","1:18655054:18657055","CGI_shore"]
[1,18659602,18659902,301,76,0.271517434059641,0.109956926217046,0.161560507842595,417.684677343907,"CHH","1:18659261:18661262","CGI_shore"]
[1,18659602,18659902,301,76,0.271517434059641,0.109956926217046,0.161560507842595,417.684677343907,"CHH","Os01g0522800","intron","Os01g0522800","Conserved hypothetical protein && - && -"]
[1,18710021,18710166,146,29,0.166144924925098,0.0650088037192244,0.101136121205874,178.254562387136,"CHH","1:18708489:18710490","CGI_shore"]
[1,18710021,18710166,146,29,0.166144924925098,0.0650088037192244,0.101136121205874,178.254562387136,"CHH","1:18710130:18712130","CGI_shore"]
[1,18744459,18744560,102,30,0.103842108237059,0.0429824856877931,0.060859622549266,130.844184674837,"CHH","1:18744147:18746147","CGI_shore"]
[1,18744459,18744560,102,30,0.103842108237059,0.0429824856877931,0.060859622549266,130.844184674837,"CHH","1:18742747:18744748","CGI_shore"]
[1,18880975,18881045,71,25,0.0656947617432813,0.0133242074054612,0.0523705543378201,116.230992073137,"CHH","1:18880422:18882423","CGI_shore"]
[1,18894816,18894934,119,36,0.103543546053673,0.0254770266713199,0.078066519382353,187.119624603817,"CHH","1:18893716:18895717","CGI_shore"]
[1,18907603,18907675,73,5,0.42260869443239,0.105569352890149,0.317039341542242,25.3474136556086,"CHG","1:18907355:18907804","CGI"]
[1,18907603,18907675,73,5,0.42260869443239,0.105569352890149,0.317039341542242,25.3474136556086,"CHG","1:18907025:18909026","CGI_shore"]
[1,18910199,18910283,85,17,0.885902811347686,0.843674859524508,0.0422279518231777,72.4334825642035,"CG","1:18909919:18911180","CGI"]
[1,18920941,18921067,127,49,0.136633920450753,0.053255806205738,0.0833781142450149,233.589880181723,"CHH","1:18920761:18921171","CGI"]
[1,18934391,18934458,68,24,0.120023182330462,0.0465564378525113,0.0734667444779507,111.25002706972,"CHH","Os01g0527400","intron","Os01g0527400","Transcription elongation factor S-II, central region domain containing protein && - && PF01426:BAH domain|PF07500:Transcription factor S-II (TFIIS), central domain"]
[1,18934391,18934458,68,24,0.120023182330462,0.0465564378525113,0.0734667444779507,111.25002706972,"CHH","1:18932488:18934488","CGI_shore"]
[1,18936237,18936316,80,26,0.212091799969656,0.107635786807387,0.104456013162269,118.910989469897,"CHH","Os01g0527400","intron","Os01g0527400","Transcription elongation factor S-II, central region domain containing protein && - && PF01426:BAH domain|PF07500:Transcription factor S-II (TFIIS), central domain"]
[1,18936237,18936316,80,26,0.212091799969656,0.107635786807387,0.104456013162269,118.910989469897,"CHH","1:18934489:18937501","CGI"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","1:18974758:18976758","CGI_shore"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","Os01g0528000","promoter","Os01g0528000","Transcription factor IIIC, subunit 5 domain containing protein && sp|Q8R2T8|TF3C5_MOUSE General transcription factor 3C polypeptide 5 OS=Mus musculus OX=10090 GN=Gtf3c5 PE=2 SV=2 && PF17682:Tau95 Triple barrel domain"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","Os01g0527900","exon","Os01g0527900","Hypothetical conserved gene && - && PF14303:No apical meristem-associated C-terminal domain"]
[1,18976681,18976773,93,8,0.285709169555376,0.0389527388306233,0.246756430724752,45.3625141128221,"CG","1:18976759:18978182","CGI"]
[1,19022228,19022447,220,85,0.168425877439867,0.0694229343038255,0.0990029431360417,429.217296792155,"CHH","1:19020589:19022589","CGI_shore"]
[1,19022228,19022447,220,85,0.168425877439867,0.0694229343038255,0.0990029431360417,429.217296792155,"CHH","1:19020673:19022674","CGI_shore"]
[1,19022228,19022447,220,85,0.168425877439867,0.0694229343038255,0.0990029431360417,429.217296792155,"CHH","1:19021635:19023635","CGI_shore"]
[1,19023195,19023283,89,19,0.128173261166375,0.0431136628964192,0.0850595982699553,95.1848920248249,"CHH","1:19023030:19025031","CGI_shore"]
[1,19023195,19023283,89,19,0.128173261166375,0.0431136628964192,0.0850595982699553,95.1848920248249,"CHH","1:19021635:19023635","CGI_shore"]
[1,19064321,19064382,62,16,0.113216165266781,0.00981434114073279,0.103401824126048,91.6780266394754,"CHH","1:19062763:19064763","CGI_shore"]
[1,19065075,19065248,174,33,0.101402346431371,0.0186124160862361,0.0827899303451345,161.487252201448,"CHH","1:19064764:19065404","CGI"]
[1,19078069,19078189,121,50,0.16106062782557,0.0350959840002202,0.125964643825349,241.000844238157,"CHH","1:19076283:19078283","CGI_shore"]
[1,19078069,19078189,121,50,0.16106062782557,0.0350959840002202,0.125964643825349,241.000844238157,"CHH","Os01g0530300","promoter","Os01g0530300","SANT associated domain containing protein && - && PF09133:SANTA (SANT Associated)"]
[1,19085582,19085641,60,18,0.415600919595906,0.296003459274518,0.119597460321388,80.0943777667427,"CHH","Os01g0530366","promoter","Os01g0530366","RNA polymerase Rbp10 domain containing protein && sp|Q9FLM8|NRPBC_ARATH DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1 && -"]
[1,19085582,19085641,60,18,0.415600919595906,0.296003459274518,0.119597460321388,80.0943777667427,"CHH","1:19083879:19086316","CGI"]
[1,19094569,19094680,112,31,0.18959548457723,0.0986433658452084,0.0909521187320212,134.11345636802,"CHH","Os01g0530450","promoter","Os01g0530450","Similar to Biostress-resistance-related protein (Fragment) && - && -"]
[1,19234926,19234982,57,19,0.158923845240426,0.00771033679300851,0.151213508447417,93.7244638326764,"CHH","1:19233072:19235072","CGI_shore"]
[1,19300115,19300239,125,33,0.147825215465906,0.0121363347736327,0.135688880692273,175.303610392809,"CHH","Os01g0533400","exon","BETA-GALACTOSIDASE 5","Glycoside hydrolase, family 35 protein && sp|Q8RUV9|BGAL1_ORYSJ Beta-galactosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0533400 PE=2 SV=1 && PF02140:Galactose binding lectin domain|PF01301:Glycosyl hydrolases family 35|PF17834:Beta-sandwich domain in beta galactosidase"]
[1,19300115,19300239,125,33,0.147825215465906,0.0121363347736327,0.135688880692273,175.303610392809,"CHH","Os01g0533400","intron","BETA-GALACTOSIDASE 5","Glycoside hydrolase, family 35 protein && sp|Q8RUV9|BGAL1_ORYSJ Beta-galactosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0533400 PE=2 SV=1 && PF02140:Galactose binding lectin domain|PF01301:Glycosyl hydrolases family 35|PF17834:Beta-sandwich domain in beta galactosidase"]
[1,19300115,19300239,125,33,0.147825215465906,0.0121363347736327,0.135688880692273,175.303610392809,"CHH","1:19299808:19301808","CGI_shore"]
[1,19324710,19324974,265,85,0.128138400486013,0.0510059728786115,0.0771324276074016,372.803969208216,"CHH","Os01g0533800","intron","Os01g0533800","Conserved hypothetical protein && sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3 && -"]
[1,19324710,19324974,265,85,0.128138400486013,0.0510059728786115,0.0771324276074016,372.803969208216,"CHH","1:19322988:19324988","CGI_shore"]
[1,19324710,19324974,265,85,0.128138400486013,0.0510059728786115,0.0771324276074016,372.803969208216,"CHH","1:19323309:19325310","CGI_shore"]
[1,19325001,19325083,83,19,0.805740478091777,0.485300695781318,0.320439782310459,82.324576695768,"CG","Os01g0533800","intron","Os01g0533800","Conserved hypothetical protein && sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3 && -"]
[1,19325001,19325083,83,19,0.805740478091777,0.485300695781318,0.320439782310459,82.324576695768,"CG","1:19323309:19325310","CGI_shore"]
[1,19325001,19325083,83,19,0.805740478091777,0.485300695781318,0.320439782310459,82.324576695768,"CG","1:19324989:19327713","CGI"]
[1,19363102,19363193,92,29,0.078384573372625,0.0295595904378199,0.0488249829348051,127.247205062593,"CHH","1:19362160:19364160","CGI_shore"]
[1,19441741,19442053,313,81,0.195445027777107,0.0889810369019565,0.106463990875151,373.338240568028,"CHH","1:19427804:19442960","CGI"]
[1,19449614,19449716,103,36,0.101215499013214,0.0187674900416027,0.0824480089716115,161.674993943199,"CHH","1:19449172:19451342","CGI"]
[1,19465702,19465778,77,18,0.397380992918433,0.148114439459983,0.24926655345845,87.0203225632363,"CHH","1:19464304:19466304","CGI_shore"]
[1,19465702,19465778,77,18,0.397380992918433,0.148114439459983,0.24926655345845,87.0203225632363,"CHH","Os01g0535900","promoter","Os01g0535900","Similar to methyltransferase && sp|Q2JRH1|TRMB_SYNJA tRNA (guanine-N(7)-)-methyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=trmB PE=3 SV=1 && PF02390:Putative methyltransferase"]
[1,19506014,19506270,257,62,0.241779407433318,0.116254972732779,0.125524434700539,311.884556759147,"CHH","1:19505384:19507384","CGI_shore"]
[1,19506014,19506270,257,62,0.241779407433318,0.116254972732779,0.125524434700539,311.884556759147,"CHH","Os01g0536433","promoter","Os01g0536433","Hypothetical protein && sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica OX=39946 GN=20ox2 PE=1 SV=1 && -"]
[1,19506014,19506270,257,62,0.241779407433318,0.116254972732779,0.125524434700539,311.884556759147,"CHH","Os01g0536400","intron","Os01g0536400","Isopenicillin N synthase family protein && sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g03400 PE=2 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[1,19530548,19530708,161,49,0.13210738706835,0.0449967474285927,0.0871106396397578,219.34854053033,"CHH","1:19529024:19531024","CGI_shore"]
[1,19530548,19530708,161,49,0.13210738706835,0.0449967474285927,0.0871106396397578,219.34854053033,"CHH","1:19529515:19531516","CGI_shore"]
[1,19600924,19600986,63,14,0.391525272884408,0.200938342053256,0.190586930831152,73.8137001338824,"CHH","1:19556911:19622510","CGI"]
[1,19647485,19647683,199,80,0.0834601813504461,0.0275615959693071,0.0558985853811389,442.083057118292,"CHH","1:19647200:19649201","CGI_shore"]
[1,19707898,19707951,54,23,0.0498867962758026,0.0155282327415774,0.0343585635342252,103.13843283965,"CHH","1:19707634:19709634","CGI_shore"]
[1,19735358,19735589,232,44,0.226202970189922,0.0203497381125058,0.205853232077416,225.050954962149,"CHH","1:19735239:19736141","CGI"]
[1,19736060,19736158,99,33,0.244264450315406,0.106423576941934,0.137840873373472,180.750400972044,"CHH","1:19735239:19736141","CGI"]
[1,19736060,19736158,99,33,0.244264450315406,0.106423576941934,0.137840873373472,180.750400972044,"CHH","1:19736141:19738142","CGI_shore"]
[1,19855012,19855107,96,34,0.186940744432101,0.0683291283993062,0.118611616032794,147.548322400238,"CHH","Os01g0540400","promoter","Os01g0540400","Transposase, MuDR, plant domain containing protein && - && PF03108:MuDR family transposase"]
[1,19855012,19855107,96,34,0.186940744432101,0.0683291283993062,0.118611616032794,147.548322400238,"CHH","Os01g0540300","promoter","Os01g0540300","Rac-like GTP-binding protein 2 && sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC2 PE=2 SV=1 && -"]
[1,19855012,19855107,96,34,0.186940744432101,0.0683291283993062,0.118611616032794,147.548322400238,"CHH","1:19854385:19855467","CGI"]
[1,19920395,19920514,120,37,0.269166838436706,0.148554825693654,0.120612012743051,185.8157503488,"CHH","1:19918533:19920534","CGI_shore"]
[1,19920395,19920514,120,37,0.269166838436706,0.148554825693654,0.120612012743051,185.8157503488,"CHH","1:19919552:19921553","CGI_shore"]
[1,19982658,19982822,165,59,0.201344301964341,0.0972016705049087,0.104142631459432,299.714106382965,"CHH","1:19980082:19983370","CGI"]
[1,19983347,19983474,128,52,0.170067090130085,0.0177518177665738,0.152315272363511,235.260993880787,"CHH","1:19980082:19983370","CGI"]
[1,19983347,19983474,128,52,0.170067090130085,0.0177518177665738,0.152315272363511,235.260993880787,"CHH","1:19983370:19985371","CGI_shore"]
[1,20064668,20064751,84,18,0.335718324072705,0.227682741915234,0.108035582157472,79.3330862489834,"CHH","1:20063744:20065744","CGI_shore"]
[1,20064668,20064751,84,18,0.335718324072705,0.227682741915234,0.108035582157472,79.3330862489834,"CHH","Os01g0543100","intron","class III peroxidase 17","Similar to Peroxidase 72 precursor (EC 1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) && sp|Q9FJZ9|PER72_ARATH Peroxidase 72 OS=Arabidopsis thaliana OX=3702 GN=PER72 PE=1 SV=1 && PF00141:Peroxidase"]
[1,20090057,20090202,146,53,0.148084958190442,0.073552715927031,0.074532242263411,232.621632311287,"CHH","1:20089953:20091954","CGI_shore"]
[1,20149669,20149819,151,50,0.0805300427557529,0.0271532261298927,0.0533768166258601,244.491081306511,"CHH","1:20148123:20150124","CGI_shore"]
[1,20218504,20218714,211,59,0.314416566165258,0.119705441157723,0.194711125007535,373.703717683167,"CHH","1:20218463:20220463","CGI_shore"]
[1,20234242,20234490,249,89,0.109216413456998,0.0476489658998823,0.0615674475571156,396.045921127434,"CHH","1:20234474:20235829","CGI"]
[1,20234242,20234490,249,89,0.109216413456998,0.0476489658998823,0.0615674475571156,396.045921127434,"CHH","1:20232473:20234473","CGI_shore"]
[1,20239678,20239887,210,59,0.232346940232265,0.103685468686245,0.128661471546021,334.246068509964,"CHH","1:20238749:20240749","CGI_shore"]
[1,20360954,20361149,196,54,0.143850634650312,0.0621101345469511,0.0817405001033613,269.297625801227,"CHH","Os01g0547200","intron","Os01g0547200","Zinc finger, BED-type predicted domain containing protein && sp|Q6ZJM9|EHD3_ORYSJ PHD finger protein EHD3 OS=Oryza sativa subsp. japonica OX=39947 GN=EHD3 PE=1 SV=1 && -"]
[1,20478157,20478351,195,69,0.179118696354755,0.0349234489896446,0.14419524736511,381.472608356858,"CHH","1:20477849:20479220","CGI"]
[1,20622750,20622838,89,8,0.305505886595068,0.0525561779593254,0.252949708635743,39.4471104634466,"CHG","1:20621254:20623255","CGI_shore"]
[1,20622750,20622838,89,8,0.305505886595068,0.0525561779593254,0.252949708635743,39.4471104634466,"CHG","1:20622534:20624535","CGI_shore"]
[1,20637230,20637364,135,40,0.271265232618981,0.067913618794085,0.203351613824896,256.689274590962,"CHH","1:20635692:20637693","CGI_shore"]
[1,20637230,20637364,135,40,0.271265232618981,0.067913618794085,0.203351613824896,256.689274590962,"CHH","1:20637338:20639338","CGI_shore"]
[1,20734328,20734428,101,13,0.560005271663002,0.013103733752381,0.546901537910621,94.7267908850674,"CHH","1:20733960:20735961","CGI_shore"]
[1,20735258,20735418,161,32,0.34369502947973,0.14063747431474,0.203057555164989,220.080025547419,"CHH","1:20733960:20735961","CGI_shore"]
[1,20737108,20737288,181,50,0.27738953059804,0.172451328934407,0.104938201663632,226.402762232868,"CHH","1:20736398:20738398","CGI_shore"]
[1,20737108,20737288,181,50,0.27738953059804,0.172451328934407,0.104938201663632,226.402762232868,"CHH","Os01g0552300","promoter","protein phosphatase 2C05, protein phosphatase 2C 05, protein phosphatase 2C5, protein phosphatase 2C 5, protein phosphatase 9","Similar to Protein phosphatase-2C && sp|Q5JKN1|P2C05_ORYSJ Probable protein phosphatase 2C 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0552300 PE=2 SV=1 && PF00481:Protein phosphatase 2C"]
[1,20778521,20778638,118,42,0.0925939145411258,0.035686502739577,0.0569074118015488,189.168423091038,"CHH","1:20777181:20779181","CGI_shore"]
[1,20778521,20778638,118,42,0.0925939145411258,0.035686502739577,0.0569074118015488,189.168423091038,"CHH","1:20778513:20780514","CGI_shore"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","Os01g0553901","utr5","Os01g0553901","HGWP repeat domain containing protein && - && PF03578:HGWP repeat"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","1:20841254:20843255","CGI_shore"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","1:20838259:20841254","CGI"]
[1,20841191,20841306,116,35,0.31416537276545,0.0635945938578486,0.250570778907602,170.569815029968,"CHH","Os01g0553901","exon","Os01g0553901","HGWP repeat domain containing protein && - && PF03578:HGWP repeat"]
[1,20880908,20881093,186,62,0.829052457123557,0.620549622744841,0.208502834378716,318.302502098641,"CG","1:20879745:20881623","CGI"]
[1,20945952,20946211,260,37,0.278374915873577,0.0624870904680253,0.215887825405552,255.079530547884,"CHH","Os01g0555300","promoter","Os01g0555300","Conserved hypothetical protein && - && -"]
[1,20945952,20946211,260,37,0.278374915873577,0.0624870904680253,0.215887825405552,255.079530547884,"CHH","1:20945762:20947763","CGI_shore"]
[1,20945952,20946211,260,37,0.278374915873577,0.0624870904680253,0.215887825405552,255.079530547884,"CHH","1:20945925:20947925","CGI_shore"]
[1,20946073,20946182,110,10,0.758063911003008,0.290855173024706,0.467208737978301,61.2148943420277,"CHG","Os01g0555300","promoter","Os01g0555300","Conserved hypothetical protein && - && -"]
[1,20946073,20946182,110,10,0.758063911003008,0.290855173024706,0.467208737978301,61.2148943420277,"CHG","1:20945762:20947763","CGI_shore"]
[1,20946073,20946182,110,10,0.758063911003008,0.290855173024706,0.467208737978301,61.2148943420277,"CHG","1:20945925:20947925","CGI_shore"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","Os01g0555300","promoter","Os01g0555300","Conserved hypothetical protein && - && -"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","1:20945762:20947763","CGI_shore"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","1:20945925:20947925","CGI_shore"]
[1,20947473,20947701,229,85,0.137019665673557,0.0542821993618758,0.0827374663116815,443.607251932726,"CHH","1:20947148:20949148","CGI_shore"]
[1,20949150,20949543,394,122,0.449898455417345,0.165403298997244,0.284495156420102,1034.84731540444,"CG","1:20948183:20950184","CGI_shore"]
[1,20949150,20949543,394,122,0.449898455417345,0.165403298997244,0.284495156420102,1034.84731540444,"CG","1:20949149:20949551","CGI"]
[1,20949310,20949457,148,23,0.234368574625076,0.056151993349484,0.178216581275592,121.594048983881,"CHG","1:20948183:20950184","CGI_shore"]
[1,20949310,20949457,148,23,0.234368574625076,0.056151993349484,0.178216581275592,121.594048983881,"CHG","1:20949149:20949551","CGI"]
[1,20998437,20998585,149,35,0.277886749292303,0.0549758802167469,0.222910869075556,184.410288572893,"CHH","1:20998192:21000192","CGI_shore"]
[1,21136044,21136284,241,83,0.16970959447846,0.0641487635994938,0.105560830878966,411.87252323771,"CHH","1:21135645:21137646","CGI_shore"]
[1,21136044,21136284,241,83,0.16970959447846,0.0641487635994938,0.105560830878966,411.87252323771,"CHH","1:21136208:21136464","CGI"]
[1,21136044,21136284,241,83,0.16970959447846,0.0641487635994938,0.105560830878966,411.87252323771,"CHH","1:21134207:21136207","CGI_shore"]
[1,21237658,21237774,117,38,0.289480272710457,0.162202917994938,0.127277354715519,210.414836443451,"CHH","1:21236329:21238330","CGI_shore"]
[1,21237658,21237774,117,38,0.289480272710457,0.162202917994938,0.127277354715519,210.414836443451,"CHH","1:21237540:21239540","CGI_shore"]
[1,21259639,21259786,148,40,0.305583514090051,0.179216030937247,0.126367483152804,206.433295601456,"CHH","1:21258460:21260461","CGI_shore"]
[1,21259639,21259786,148,40,0.305583514090051,0.179216030937247,0.126367483152804,206.433295601456,"CHH","1:21259596:21261596","CGI_shore"]
[1,21264223,21264402,180,69,0.199655882250492,0.108285716516035,0.0913701657344569,338.636975640454,"CHH","1:21263955:21265955","CGI_shore"]
[1,21264223,21264402,180,69,0.199655882250492,0.108285716516035,0.0913701657344569,338.636975640454,"CHH","1:21263981:21265982","CGI_shore"]
[1,21271355,21271498,144,33,0.236087296518144,0.122186538308721,0.113900758209422,157.379286619028,"CHH","1:21270582:21272582","CGI_shore"]
[1,21271355,21271498,144,33,0.236087296518144,0.122186538308721,0.113900758209422,157.379286619028,"CHH","Os01g0560000","promoter","ILL1","Similar to Auxin amidohydrolase && sp|Q8S9S4|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ILL1 PE=2 SV=1 && PF01546:Peptidase family M20/M25/M40|PF07687:Peptidase dimerisation domain"]
[1,21271355,21271498,144,33,0.236087296518144,0.122186538308721,0.113900758209422,157.379286619028,"CHH","1:21270864:21272865","CGI_shore"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","1:21270582:21272582","CGI_shore"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","Os01g0560000","promoter","ILL1","Similar to Auxin amidohydrolase && sp|Q8S9S4|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ILL1 PE=2 SV=1 && PF01546:Peptidase family M20/M25/M40|PF07687:Peptidase dimerisation domain"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","1:21270864:21272865","CGI_shore"]
[1,21272538,21272594,57,23,0.14374054637274,0.0329154132186013,0.110825133154138,178.866087639416,"CHH","1:21272583:21273799","CGI"]
[1,21273100,21273291,192,52,0.369304157920244,0.206700392013054,0.16260376590719,283.036463588263,"CG","1:21272583:21273799","CGI"]
[1,21273663,21274185,523,174,0.247898055667258,0.11245922123667,0.135438834430588,1056.94062412005,"CHH","1:21272583:21273799","CGI"]
[1,21273663,21274185,523,174,0.247898055667258,0.11245922123667,0.135438834430588,1056.94062412005,"CHH","Os01g0560200","promoter","Os01g0560200","Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13) && sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus|PF05008:Vesicle transport v-SNARE protein N-terminus"]
[1,21273663,21274185,523,174,0.247898055667258,0.11245922123667,0.135438834430588,1056.94062412005,"CHH","1:21273799:21275800","CGI_shore"]
[1,21274238,21274322,85,17,0.13727675561593,0.0378003784790398,0.09947637713689,87.748783073777,"CHH","Os01g0560200","promoter","Os01g0560200","Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13) && sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus|PF05008:Vesicle transport v-SNARE protein N-terminus"]
[1,21274238,21274322,85,17,0.13727675561593,0.0378003784790398,0.09947637713689,87.748783073777,"CHH","1:21273799:21275800","CGI_shore"]
[1,21279061,21279305,245,59,0.131322783472058,0.0410573908227483,0.0902653926493096,298.435536811449,"CHH","1:21278291:21280291","CGI_shore"]
[1,21285455,21285651,197,47,0.704363105820897,0.497055663791858,0.20730744202904,273.771294383381,"CG","1:21283890:21286727","CGI"]
[1,21285793,21285910,118,41,0.105532175656603,0.0331106050831421,0.0724215705734613,190.626803048367,"CHH","1:21283890:21286727","CGI"]
[1,21288829,21288929,101,39,0.0641980080353359,0.0173576428058203,0.0468403652295156,170.399094704038,"CHH","1:21287938:21289938","CGI_shore"]
[1,21301643,21301798,156,44,0.870864944606348,0.660245517265235,0.210619427341114,203.839023979982,"CG","1:21300442:21302443","CGI_shore"]
[1,21301643,21301798,156,44,0.870864944606348,0.660245517265235,0.210619427341114,203.839023979982,"CG","1:21301286:21301819","CGI"]
[1,21310664,21310846,183,51,0.246923251500538,0.119082343206332,0.127840908294206,253.342785234575,"CHH","1:21310576:21312577","CGI_shore"]
[1,21311630,21311685,56,18,0.13266276012359,0.0246768351569946,0.107985924966596,100.548331036377,"CHH","1:21310576:21312577","CGI_shore"]
[1,21360434,21360519,86,18,0.16423840864332,0.0763633053257714,0.0878751033175488,83.9380397145018,"CHH","1:21358587:21360587","CGI_shore"]
[1,21360434,21360519,86,18,0.16423840864332,0.0763633053257714,0.0878751033175488,83.9380397145018,"CHH","Os01g0561950","promoter","Os01g0561950","Hypothetical protein && - && PF03140:Plant protein of unknown function"]
[1,21390012,21390075,64,15,0.438235354476647,0.274151785848826,0.164083568627821,70.2928401409303,"CHH","1:21388819:21390819","CGI_shore"]
[1,21592980,21593072,93,33,0.0962092710809837,0.0209149620178018,0.0752943090631819,254.37659435339,"CHH","1:21591003:21593003","CGI_shore"]
[1,21592980,21593072,93,33,0.0962092710809837,0.0209149620178018,0.0752943090631819,254.37659435339,"CHH","1:21593004:21593343","CGI"]
[1,21592980,21593072,93,33,0.0962092710809837,0.0209149620178018,0.0752943090631819,254.37659435339,"CHH","1:21592361:21594362","CGI_shore"]
[1,21595027,21595111,85,13,0.336330818961943,0.10379398774793,0.232536831214012,73.753268251442,"CHH","1:21593343:21595344","CGI_shore"]
[1,21595027,21595111,85,13,0.336330818961943,0.10379398774793,0.232536831214012,73.753268251442,"CHH","1:21593902:21595902","CGI_shore"]
[1,21603017,21603396,380,81,0.415592945647095,0.204139329138422,0.211453616508673,507.472382922471,"CHH","1:21601671:21603671","CGI_shore"]
[1,21603017,21603396,380,81,0.415592945647095,0.204139329138422,0.211453616508673,507.472382922471,"CHH","1:21601712:21603713","CGI_shore"]
[1,21661047,21661253,207,36,0.363213209287963,0.206660002406248,0.156553206881715,166.622435761514,"CHH","1:21661228:21663402","CGI"]
[1,21661047,21661253,207,36,0.363213209287963,0.206660002406248,0.156553206881715,166.622435761514,"CHH","1:21659227:21661227","CGI_shore"]
[1,21665386,21665452,67,30,0.178445808775667,0.0822990118834921,0.0961467968921753,151.934114428955,"CHH","1:21663402:21665403","CGI_shore"]
[1,21665386,21665452,67,30,0.178445808775667,0.0822990118834921,0.0961467968921753,151.934114428955,"CHH","1:21664258:21666258","CGI_shore"]
[1,21690593,21690790,198,51,0.305616288500812,0.190037220575103,0.115579067925709,235.288272617657,"CHH","Os01g0566800","promoter","basic helix-loop-helix protein 117","Hypothetical conserved gene && sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1 && PF00010:Helix-loop-helix DNA-binding domain"]
[1,21690593,21690790,198,51,0.305616288500812,0.190037220575103,0.115579067925709,235.288272617657,"CHH","1:21689216:21691217","CGI_shore"]
[1,21695134,21695293,160,39,0.342520325896875,0.186374198659823,0.156146127237051,189.737026037427,"CHH","1:21694212:21696212","CGI_shore"]
[1,21704590,21704718,129,44,0.159461795848153,0.0270929123708504,0.132368883477302,246.192929145975,"CHH","1:21703055:21705055","CGI_shore"]
[1,21704590,21704718,129,44,0.159461795848153,0.0270929123708504,0.132368883477302,246.192929145975,"CHH","Os01g0566900","promoter","Os01g0566900","Similar to 3'-5' exonuclease domain-containing protein-like && - && PF01612:3'-5' exonuclease|PF00013:KH domain"]
[1,21704925,21704984,60,18,0.203475491912678,0.0615677555701416,0.141907736342537,103.612799788736,"CHH","1:21703055:21705055","CGI_shore"]
[1,21704925,21704984,60,18,0.203475491912678,0.0615677555701416,0.141907736342537,103.612799788736,"CHH","Os01g0566900","promoter","Os01g0566900","Similar to 3'-5' exonuclease domain-containing protein-like && - && PF01612:3'-5' exonuclease|PF00013:KH domain"]
[1,21719494,21719564,71,15,0.10835872143013,0.0264419643965757,0.0819167570335541,74.6151470298773,"CHH","Os01g0567500","promoter","Monosaccharide transporter 8","Similar to Monosaccharide transporter 3 && sp|Q94EC4|MST8_ORYSJ Sugar transport protein MST8 OS=Oryza sativa subsp. japonica OX=39947 GN=MST8 PE=2 SV=2 && PF00083:Sugar (and other) transporter"]
[1,21797539,21797639,101,21,0.259860410758082,0.0581811911781537,0.201679219579928,101.35987469876,"CHH","Os01g0568800","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 37","Protein kinase, catalytic domain domain containing protein && sp|Q9M0X5|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CRK25 PE=3 SV=1 && PF01657:Salt stress response/antifungal"]
[1,21804695,21804772,78,22,0.193262310223561,0.0499065201876161,0.143355790035945,92.3684816633768,"CHH","Os01g0568950","promoter","Os01g0568950","Similar to barren inflorescence2 && - && -"]
[1,21812835,21812887,53,15,0.109303953914892,0.0119006591034595,0.0974032948114324,74.8975444454673,"CHH","1:21811376:21813376","CGI_shore"]
[1,21812835,21812887,53,15,0.109303953914892,0.0119006591034595,0.0974032948114324,74.8975444454673,"CHH","Os01g0569200","promoter","Os01g0569200","Domain of unknown function DUF1618 domain containing protein && - && -"]
[1,21884834,21885087,254,53,0.0980078959088448,0.0260566033621153,0.0719512925467295,248.352426454916,"CHH","1:21884877:21886877","CGI_shore"]
[1,21889241,21889359,119,39,0.167351044467888,0.0775215364008349,0.0898295080670526,190.616697358718,"CHH","1:21886878:21893874","CGI"]
[1,21889241,21889359,119,39,0.167351044467888,0.0775215364008349,0.0898295080670526,190.616697358718,"CHH","Os01g0570601","promoter","Os01g0570601","Conserved hypothetical protein && - && -"]
[1,21904857,21905005,149,36,0.412053745046908,0.214831933076927,0.197221811969982,199.683149232374,"CHH","Os01g0570800","promoter","Os01g0570800","IQ calmodulin-binding region domain containing protein && sp|O82645|IQM1_ARATH IQ domain-containing protein IQM1 OS=Arabidopsis thaliana OX=3702 GN=IQM1 PE=1 SV=1 && -"]
[1,22036478,22036532,55,15,0.143183565124627,0.0329207308308027,0.110262834293825,71.1759733610931,"CHH","1:22035861:22051376","CGI"]
[1,22109800,22109874,75,18,0.106829532079975,3.5966962908429E-3,0.103232835789132,110.772289219625,"CHH","1:22107964:22109964","CGI_shore"]
[1,22109800,22109874,75,18,0.106829532079975,3.5966962908429E-3,0.103232835789132,110.772289219625,"CHH","1:22108800:22110800","CGI_shore"]
[1,22240094,22240159,66,19,0.200457001987707,0.0877535916576716,0.112703410330036,83.5024310815426,"CHH","1:22239906:22241906","CGI_shore"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","1:22315402:22323577","CGI"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","1:22322955:22324955","CGI_shore"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","Os01g0577300","promoter","TRANSCRIPTIONAL ACTIVATOR B","Similar to Rb (Fragment) && sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays OX=4577 GN=LC PE=1 SV=1 && PF00010:Helix-loop-helix DNA-binding domain"]
[1,22323556,22323684,129,46,0.242875492246469,0.117663975334418,0.125211516912051,242.562935000337,"CHH","1:22323577:22325578","CGI_shore"]
[1,22358961,22359162,202,68,0.388714482270893,0.244687640800248,0.144026841470646,312.715993635807,"CHH","Os01g0578000","promoter","DNA REPAIR PROTEIN RAD51C","DNA repair protein, DNA double-strand break repair, synaptonemal complex assembl && sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=RAD51C PE=1 SV=2 && -"]
[1,22358961,22359162,202,68,0.388714482270893,0.244687640800248,0.144026841470646,312.715993635807,"CHH","1:22358390:22360391","CGI_shore"]
[1,22358961,22359162,202,68,0.388714482270893,0.244687640800248,0.144026841470646,312.715993635807,"CHH","1:22358491:22360491","CGI_shore"]
[1,22363932,22364072,141,48,0.274894892006526,0.153761440321051,0.121133451685475,217.243562881033,"CHH","1:22362144:22364145","CGI_shore"]
[1,22383154,22383234,81,18,0.107095154031511,0.0328373661297716,0.0742577879017394,77.4557770274339,"CHH","1:22381254:22383254","CGI_shore"]
[1,22383154,22383234,81,18,0.107095154031511,0.0328373661297716,0.0742577879017394,77.4557770274339,"CHH","1:22383041:22385041","CGI_shore"]
[1,22383154,22383234,81,18,0.107095154031511,0.0328373661297716,0.0742577879017394,77.4557770274339,"CHH","Os01g0578800","promoter","Os_F0791","Conserved hypothetical protein && - && -"]
[1,22390236,22390352,117,42,0.336220728025592,0.193152582394376,0.143068145631216,198.627717580206,"CHH","1:22388756:22390756","CGI_shore"]
[1,22390236,22390352,117,42,0.336220728025592,0.193152582394376,0.143068145631216,198.627717580206,"CHH","1:22389357:22391358","CGI_shore"]
[1,22395213,22395356,144,43,0.149918378502489,0.0712611172700824,0.0786572612324063,182.013874303022,"CHH","1:22393387:22395388","CGI_shore"]
[1,22395213,22395356,144,43,0.149918378502489,0.0712611172700824,0.0786572612324063,182.013874303022,"CHH","1:22393583:22395583","CGI_shore"]
[1,22408585,22408720,136,48,0.082424358370519,0.0215982723413408,0.0608260860291782,231.104933869618,"CHH","1:22401429:22412181","CGI"]
[1,22431818,22431989,172,32,0.442261872575413,0.246975580412157,0.195286292163256,173.821378124938,"CHH","1:22431321:22433321","CGI_shore"]
[1,22432466,22432784,319,89,0.380964760660363,0.182122131459076,0.198842629201287,620.675523826519,"CHH","1:22431321:22433321","CGI_shore"]
[1,22629175,22629319,145,29,0.243322709694611,0.0876909275847524,0.155631782109858,160.557646030626,"CHH","Os01g0583200","promoter","Os01g0583200","Zinc finger, C2H2, LYAR-type domain containing protein && sp|O64571|UBA1C_ARATH UBP1-associated proteins 1C OS=Arabidopsis thaliana OX=3702 GN=UBA1C PE=3 SV=2 && PF12874:Zinc-finger of C2H2 type|PF08790:LYAR-type C2HC zinc finger"]
[1,22629175,22629319,145,29,0.243322709694611,0.0876909275847524,0.155631782109858,160.557646030626,"CHH","1:22628070:22630071","CGI_shore"]
[1,22632093,22632474,382,86,0.297753933141181,0.141457659393447,0.156296273747734,434.482803653631,"CHH","1:22631154:22633154","CGI_shore"]
[1,22666691,22666906,216,37,0.360032513168459,0.0744227494417643,0.285609763726695,186.96601445729,"CG","1:22665971:22666907","CGI"]
[1,22681980,22682103,124,22,0.311842532251533,0.0716651329107344,0.240177399340798,106.342182268687,"CHH","Os01g0584250","promoter","Os01g0584250","Hypothetical gene && sp|Q39160|MYO5_ARATH Myosin-5 OS=Arabidopsis thaliana OX=3702 GN=XI-1 PE=1 SV=1 && PF01843:DIL domain"]
[1,22681980,22682103,124,22,0.311842532251533,0.0716651329107344,0.240177399340798,106.342182268687,"CHH","1:22681630:22683631","CGI_shore"]
[1,22765533,22765680,148,22,0.200955572623858,0.0464605009589195,0.154495071664938,106.188714347049,"CHH","1:22764855:22766855","CGI_shore"]
[1,22790911,22791115,205,46,0.481142995945005,0.216679700678755,0.26446329526625,315.80616881432,"CHH","Os01g0586000","promoter","Os01g0586000","Similar to H0714H04.7 protein && - && -"]
[1,22790911,22791115,205,46,0.481142995945005,0.216679700678755,0.26446329526625,315.80616881432,"CHH","1:22789114:22791114","CGI_shore"]
[1,22903833,22903951,119,26,0.0582347056997656,0.00654965978575566,0.0516850459140099,122.932573798527,"CHH","Os01g0588000","promoter","Os01g0588000","Heat shock protein Hsp20 domain containing protein && - && PF00011:Hsp20/alpha crystallin family"]
[1,23012915,23013078,164,31,0.186865033480173,0.0653061719730118,0.121558861507162,141.679668439128,"CHH","1:23012405:23014406","CGI_shore"]
[1,23020945,23021030,86,16,0.167262045314039,0.0206372305426696,0.14662481477137,85.3462589056024,"CHH","1:23020097:23022098","CGI_shore"]
[1,23075271,23075404,134,41,0.411225070007918,0.142620641734555,0.268604428273364,208.04506488076,"CHH","1:23073949:23075950","CGI_shore"]
[1,23075271,23075404,134,41,0.411225070007918,0.142620641734555,0.268604428273364,208.04506488076,"CHH","Os01g0590700","intron","Os01g0590700","Peptidase M41 domain containing protein && sp|A2ZVG7|FTSH9_ORYSJ ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH9 PE=3 SV=1 && PF01434:Peptidase family M41"]
[1,23116348,23116449,102,35,0.0939862401233667,0.0280097102351998,0.0659765298881669,184.984591453137,"CHH","Os01g0591300","intron","Os01g0591300","Similar to Cytosolic aldehyde dehydrogenase RF2D && sp|Q56YU0|AL2C4_ARATH Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2 && PF00171:Aldehyde dehydrogenase family"]
[1,23116348,23116449,102,35,0.0939862401233667,0.0280097102351998,0.0659765298881669,184.984591453137,"CHH","1:23115332:23117332","CGI_shore"]
[1,23116521,23116675,155,36,0.202510994450494,0.0812271153994972,0.121283879050997,197.751872041451,"CHH","Os01g0591300","intron","Os01g0591300","Similar to Cytosolic aldehyde dehydrogenase RF2D && sp|Q56YU0|AL2C4_ARATH Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2 && PF00171:Aldehyde dehydrogenase family"]
[1,23116521,23116675,155,36,0.202510994450494,0.0812271153994972,0.121283879050997,197.751872041451,"CHH","1:23115332:23117332","CGI_shore"]
[1,23138554,23138653,100,19,0.142030294957797,0.0166233422167762,0.125406952741021,87.201906356908,"CHH","1:23136101:23141671","CGI"]
[1,23171628,23171835,208,32,0.440584011614723,0.24310096974394,0.197483041870784,162.564968895073,"CHG","1:23171100:23172484","CGI"]
[1,23171628,23171835,208,32,0.440584011614723,0.24310096974394,0.197483041870784,162.564968895073,"CHG","1:23171807:23173807","CGI_shore"]
[1,23171633,23171851,219,35,0.698971984798823,0.504271305652443,0.19470067914638,152.21126801157,"CG","1:23171100:23172484","CGI"]
[1,23171633,23171851,219,35,0.698971984798823,0.504271305652443,0.19470067914638,152.21126801157,"CG","1:23171807:23173807","CGI_shore"]
[1,23207256,23207418,163,50,0.0692192579958038,0.00682850716537962,0.0623907508304242,256.196828876812,"CHH","Os01g0593000","promoter","Os01g0593000","Similar to predicted protein && - && -"]
[1,23221826,23221907,82,17,0.2833846725958,0.130876509917257,0.152508162678543,97.3159120269254,"CHH","1:23220042:23222043","CGI_shore"]
[1,23326944,23327073,130,35,0.171429083949755,0.0231267635331499,0.148302320416605,194.741397213434,"CHH","1:23326339:23328340","CGI_shore"]
[1,23326944,23327073,130,35,0.171429083949755,0.0231267635331499,0.148302320416605,194.741397213434,"CHH","1:23326722:23328722","CGI_shore"]
[1,23353215,23353316,102,24,0.330877975395671,0.2110838269638,0.119794148431871,111.759516850212,"CHH","Os01g0595800","promoter","F-box protein 22","FBD domain containing protein && - && PF08387:FBD"]
[1,23353215,23353316,102,24,0.330877975395671,0.2110838269638,0.119794148431871,111.759516850212,"CHH","1:23352827:23354828","CGI_shore"]
[1,23353215,23353316,102,24,0.330877975395671,0.2110838269638,0.119794148431871,111.759516850212,"CHH","Os01g0595725","promoter","Os01g0595725","Hypothetical protein && - && PF00646:F-box domain"]
[1,23363322,23363425,104,29,0.243757271554694,0.0727996389843018,0.170957632570392,206.204980814536,"CHH","1:23361580:23363581","CGI_shore"]
[1,23363322,23363425,104,29,0.243757271554694,0.0727996389843018,0.170957632570392,206.204980814536,"CHH","1:23361798:23363798","CGI_shore"]
[1,23363322,23363425,104,29,0.243757271554694,0.0727996389843018,0.170957632570392,206.204980814536,"CHH","Os01g0596100","promoter","F-box protein 25","Cyclin-like F-box domain containing protein && sp|Q9FNJ1|FDL47_ARATH F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22700 PE=2 SV=2 && PF08387:FBD"]
[1,23445984,23446127,144,43,0.239037826516295,0.127642223192003,0.111395603324292,203.931876821587,"CHH","1:23444668:23446668","CGI_shore"]
[1,23445984,23446127,144,43,0.239037826516295,0.127642223192003,0.111395603324292,203.931876821587,"CHH","Os01g0597600","promoter","amino acid transporter-like 15","Amino acid transporter, transmembrane domain containing protein && sp|F4J1Q9|AVT1I_ARATH Amino acid transporter AVT1I OS=Arabidopsis thaliana OX=3702 GN=AVT1I PE=3 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[1,23445984,23446127,144,43,0.239037826516295,0.127642223192003,0.111395603324292,203.931876821587,"CHH","1:23445462:23447463","CGI_shore"]
[1,23512893,23513012,120,40,0.329873230693527,0.186657134948693,0.143216095744833,206.052319775804,"CHH","1:23511224:23518384","CGI"]
[1,23512893,23513012,120,40,0.329873230693527,0.186657134948693,0.143216095744833,206.052319775804,"CHH","Os01g0598400","promoter","F-box protein 28","Cyclin-like F-box domain containing protein && sp|Q9SAG4|FB93_ARATH F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 && PF08387:FBD"]
[1,23512893,23513012,120,40,0.329873230693527,0.186657134948693,0.143216095744833,206.052319775804,"CHH","Os01g0598600","promoter","Os01g0598600","Peptidase A1 domain containing protein && sp|Q9LNJ3|APF2_ARATH Aspartyl protease family protein 2 OS=Arabidopsis thaliana OX=3702 GN=APF2 PE=2 SV=1 && PF14543:Xylanase inhibitor N-terminal|PF14541:Xylanase inhibitor C-terminal"]
[1,23586533,23586676,144,27,0.195476697688657,0.0321303127548298,0.163346384933827,146.056958770791,"CHH","Os01g0600500","promoter","Os01g0600500","Similar to Phosphoethanolamine/phosphocholine phosphatase && sp|Q9SU92|PPSP3_ARATH Thiamine phosphate phosphatase-like protein OS=Arabidopsis thaliana OX=3702 GN=At4g29530 PE=1 SV=1 && PF06888:Putative Phosphatase"]
[1,23586533,23586676,144,27,0.195476697688657,0.0321303127548298,0.163346384933827,146.056958770791,"CHH","1:23584897:23608393","CGI"]
[1,23593528,23593585,58,17,0.408611607044335,0.254688966483996,0.153922640560338,75.0008453315105,"CHH","1:23584897:23608393","CGI"]
[1,23613932,23614158,227,55,0.282731537902862,0.167375596930796,0.115355940972066,252.898581435975,"CHH","1:23612595:23614595","CGI_shore"]
[1,23613932,23614158,227,55,0.282731537902862,0.167375596930796,0.115355940972066,252.898581435975,"CHH","Os01g0601000","intron","endosperm-specific gene 10","Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB domain containing protein && - && PF01544:CorA-like Mg2+ transporter protein"]
[1,23617863,23618246,384,97,0.241439956313985,0.108979101415849,0.132460854898135,499.625925180391,"CHH","1:23616222:23618223","CGI_shore"]
[1,23639050,23639127,78,19,0.064457401183793,0.00833386933703506,0.0561235318467579,92.6498454590065,"CHH","1:23638416:23640417","CGI_shore"]
[1,23639050,23639127,78,19,0.064457401183793,0.00833386933703506,0.0561235318467579,92.6498454590065,"CHH","Os01g0601651","intron","Os01g0601651","Plant disease resistance response protein domain containing protein && sp|Q67YM6|DIR11_ARATH Dirigent protein 11 OS=Arabidopsis thaliana OX=3702 GN=DIR11 PE=2 SV=1 && -"]
[1,23662078,23662165,88,21,0.806521928058666,0.547078981158343,0.259442946900323,86.8278686913735,"CG","1:23662057:23662805","CGI"]
[1,23684760,23684845,86,19,0.10442245612173,0.0133013103442855,0.0911211457774443,119.335958949905,"CHH","1:23682929:23684929","CGI_shore"]
[1,23684760,23684845,86,19,0.10442245612173,0.0133013103442855,0.0911211457774443,119.335958949905,"CHH","Os01g0602466","intron","Os01g0602466","Hypothetical protein && sp|A0A0S2IHL2|C7A39_KALSE Cytochrome P450 72A397 OS=Kalopanax septemlobus OX=228393 GN=CYP72A397 PE=1 SV=1 && -"]
[1,23684760,23684845,86,19,0.10442245612173,0.0133013103442855,0.0911211457774443,119.335958949905,"CHH","Os01g0602500","intron","P-450 72A33","Cytochrome P450 family protein && sp|W8JWW3|CA225_CATRO Cytochrome P450 72A225 OS=Catharanthus roseus OX=4058 GN=CYP72A225 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,23687359,23687479,121,23,0.15433505988795,0.0475193812130257,0.106815678674924,109.409456307656,"CHH","Os01g0602500","promoter","P-450 72A33","Cytochrome P450 family protein && sp|W8JWW3|CA225_CATRO Cytochrome P450 72A225 OS=Catharanthus roseus OX=4058 GN=CYP72A225 PE=2 SV=1 && PF00067:Cytochrome P450"]
[1,23687359,23687479,121,23,0.15433505988795,0.0475193812130257,0.106815678674924,109.409456307656,"CHH","1:23685395:23687396","CGI_shore"]
[1,23687359,23687479,121,23,0.15433505988795,0.0475193812130257,0.106815678674924,109.409456307656,"CHH","1:23686302:23688302","CGI_shore"]
[1,23687792,23687863,72,17,0.251792483594177,0.0982537597427541,0.153538723851423,91.8961323667699,"CHH","1:23686302:23688302","CGI_shore"]
[1,23692236,23692494,259,29,0.218403900957763,0.0142161110108753,0.204187789946888,174.668969609863,"CHH","1:23690721:23692722","CGI_shore"]
[1,23706178,23706364,187,55,0.134387817993412,0.0596954987849678,0.0746923192084439,243.903326353221,"CHH","1:23704383:23706384","CGI_shore"]
[1,23706178,23706364,187,55,0.134387817993412,0.0596954987849678,0.0746923192084439,243.903326353221,"CHH","1:23706235:23708235","CGI_shore"]
[1,23719596,23719700,105,16,0.57042031268048,0.20598811995649,0.36443219272399,94.9174099984525,"CHH","1:23717919:23719919","CGI_shore"]
[1,23719596,23719700,105,16,0.57042031268048,0.20598811995649,0.36443219272399,94.9174099984525,"CHH","1:23718429:23720429","CGI_shore"]
[1,23831422,23831524,103,29,0.182829196440548,0.0761300112825312,0.106699185158017,170.686684775943,"CHH","1:23830236:23832237","CGI_shore"]
[1,23832066,23832187,122,22,0.276665676689591,0.0848442863511959,0.191821390338395,125.178613757076,"CHH","1:23830236:23832237","CGI_shore"]
[1,23862884,23863222,339,75,0.215653531503769,0.0802857403128972,0.135367791190872,435.094634900574,"CHH","1:23862633:23864633","CGI_shore"]
[1,23862884,23863222,339,75,0.215653531503769,0.0802857403128972,0.135367791190872,435.094634900574,"CHH","Os01g0605700","promoter","SWEET6B","MtN3 and saliva related transmembrane protein family protein && sp|Q8W0K2|SWT6B_ORYSJ Bidirectional sugar transporter SWEET6b OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6B PE=2 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23993073,23993264,192,59,0.188386917625126,0.00848633599407824,0.179900581631048,349.371095753922,"CHH","1:23991601:23993602","CGI_shore"]
[1,23993073,23993264,192,59,0.188386917625126,0.00848633599407824,0.179900581631048,349.371095753922,"CHH","1:23991734:23993734","CGI_shore"]
[1,24086522,24086643,122,23,0.0765596148614341,0.0280223928569788,0.0485372220044552,105.875886898607,"CHH","1:24086146:24088146","CGI_shore"]
[1,24184743,24184958,216,61,0.424641590503839,0.238134877182734,0.186506713321104,355.601234193909,"CHH","1:24177695:24193449","CGI"]
[1,24287437,24287618,182,43,0.104752102561777,0.0299140729041207,0.0748380296576558,204.65271378017,"CHH","1:24285908:24287909","CGI_shore"]
[1,24345827,24345942,116,40,0.386196737452098,0.266639696180964,0.119557041271134,170.057645898369,"CHH","Os01g0613500","promoter","Os01g0613500","Peptidase C1A, papain family protein && sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14861 PE=3 SV=1 && PF00112:Papain family cysteine protease|PF08246:Cathepsin propeptide inhibitor domain (I29)"]
[1,24487489,24487707,219,44,0.68926096531974,0.0420499000811709,0.647211065238569,586.116133066471,"CG","1:24484417:24488266","CGI"]
[1,24487496,24487650,155,17,0.419104583700754,0.0240727005692304,0.395031883131523,96.6203385922477,"CHG","1:24484417:24488266","CGI"]
[1,24590886,24590940,55,23,0.151189513318402,0.0674234271054127,0.0837660862129895,103.878313428049,"CHH","1:24589312:24591312","CGI_shore"]
[1,24681185,24681326,142,38,0.0924907159147547,0.0229974411094574,0.0694932748052974,180.811959017843,"CHH","1:24679390:24681390","CGI_shore"]
[1,24681185,24681326,142,38,0.0924907159147547,0.0229974411094574,0.0694932748052974,180.811959017843,"CHH","1:24679662:24681663","CGI_shore"]
[1,24681185,24681326,142,38,0.0924907159147547,0.0229974411094574,0.0694932748052974,180.811959017843,"CHH","1:24680055:24682055","CGI_shore"]
[1,24687333,24687422,90,30,0.194945834556514,0.070596981742734,0.12434885281378,139.946886074575,"CHH","1:24685394:24687394","CGI_shore"]
[1,24687333,24687422,90,30,0.194945834556514,0.070596981742734,0.12434885281378,139.946886074575,"CHH","1:24687395:24687993","CGI"]
[1,24713892,24713998,107,13,0.344131634785676,0.0478074685089303,0.296324166276746,74.459349742856,"CHH","Os01g0620400","promoter","Os01g0620400","Hypothetical protein && - && -"]
[1,24713892,24713998,107,13,0.344131634785676,0.0478074685089303,0.296324166276746,74.459349742856,"CHH","1:24713693:24715694","CGI_shore"]
[1,24728030,24728084,55,18,0.146193290250925,0.0531918941490181,0.0930013961019069,88.9847195042708,"CHH","1:24727717:24728228","CGI"]
[1,24728030,24728084,55,18,0.146193290250925,0.0531918941490181,0.0930013961019069,88.9847195042708,"CHH","1:24727724:24729724","CGI_shore"]
[1,24732184,24732378,195,48,0.196023456834132,0.0638318025118879,0.132191654322244,317.014363503129,"CHH","1:24730278:24732279","CGI_shore"]
[1,24732184,24732378,195,48,0.196023456834132,0.0638318025118879,0.132191654322244,317.014363503129,"CHH","1:24731427:24733427","CGI_shore"]
[1,24754782,24755072,291,68,0.279997351164647,0.078724293050262,0.201273058114385,420.880978826493,"CHH","Os01g0621200","intron","gamma-aminobutyric acid transporter 2","Similar to proline transporter && sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana OX=3702 GN=At5g41800 PE=1 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[1,24754782,24755072,291,68,0.279997351164647,0.078724293050262,0.201273058114385,420.880978826493,"CHH","1:24754513:24756514","CGI_shore"]
[1,24777139,24777215,77,6,0.694879104820292,0.339376469092635,0.355502635727657,27.198090111378,"CHG","Target=RETROFIT_I-int:100-2318;Class=LTR/Copia","repeat"]
[1,24852735,24852880,146,53,0.164156319652002,0.0140642308582458,0.150092088793756,317.036862457714,"CHH","1:24851147:24853148","CGI_shore"]
[1,24852735,24852880,146,53,0.164156319652002,0.0140642308582458,0.150092088793756,317.036862457714,"CHH","Os01g0622800","promoter","Os01g0622800","Hypothetical protein && - && -"]
[1,24852735,24852880,146,53,0.164156319652002,0.0140642308582458,0.150092088793756,317.036862457714,"CHH","1:24852596:24854597","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","1:24892006:24894006","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","1:24892407:24894408","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","1:24892427:24894427","CGI_shore"]
[1,24893714,24893795,82,31,0.160043704861461,0.0723985716206775,0.0876451332407839,164.018988196485,"CHH","Os01g0623500","promoter","Os01g0623500","ATPase, AAA-type, core domain containing protein && sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus OX=9031 GN=SPAST PE=2 SV=2 && PF17862:AAA+ lid domain|PF00004:ATPase family associated with various cellular activities (AAA)"]
[1,24912344,24912472,129,33,0.588495410685715,0.412275275042956,0.176220135642758,185.565603044837,"CHH","1:24910420:24912421","CGI_shore"]
[1,24952284,24952434,151,54,0.277816911246242,0.060551752884719,0.217265158361523,420.540006158353,"CHH","1:24951632:24954500","CGI"]
[1,24957807,24957905,99,30,0.268891980074679,0.112998736729213,0.155893243345466,147.608799846978,"CHH","1:24956393:24958394","CGI_shore"]
[1,24957807,24957905,99,30,0.268891980074679,0.112998736729213,0.155893243345466,147.608799846978,"CHH","1:24957030:24959074","CGI"]
[1,25033840,25033999,160,29,0.307956123916989,0.0468193042577177,0.261136819659271,188.031968306971,"CHH","Os01g0626900","promoter","Os01g0626900","Helix-loop-helix DNA-binding domain containing protein && sp|Q9ASX9|BH144_ARATH Transcription factor bHLH144 OS=Arabidopsis thaliana OX=3702 GN=BHLH144 PE=1 SV=1 && -"]
[1,25052841,25053031,191,29,0.44317720245994,0.255257666909711,0.187919535550229,164.894984153391,"CHH","1:25052738:25054739","CGI_shore"]
[1,25093136,25093342,207,50,0.232801221857672,0.112790757297869,0.120010464559803,243.815479156293,"CHH","1:25091535:25122898","CGI"]
[1,25159729,25159830,102,28,0.852212129887087,0.660619312244423,0.191592817642663,130.309163951471,"CG","1:25157694:25159951","CGI"]
[1,25159729,25159830,102,28,0.852212129887087,0.660619312244423,0.191592817642663,130.309163951471,"CG","Os01g0629900","promoter","MAP kinase 20-1","Similar to Blast and wounding induced mitogen-activated protein kinase && sp|Q5ZCI1|MPK10_ORYSJ Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK10 PE=2 SV=2 && PF00069:Protein kinase domain"]
[1,25159943,25160032,90,23,0.277372695523585,0.100863565504481,0.176509130019105,119.207115802752,"CHH","1:25157694:25159951","CGI"]
[1,25159943,25160032,90,23,0.277372695523585,0.100863565504481,0.176509130019105,119.207115802752,"CHH","Os01g0629900","promoter","MAP kinase 20-1","Similar to Blast and wounding induced mitogen-activated protein kinase && sp|Q5ZCI1|MPK10_ORYSJ Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK10 PE=2 SV=2 && PF00069:Protein kinase domain"]
[1,25159943,25160032,90,23,0.277372695523585,0.100863565504481,0.176509130019105,119.207115802752,"CHH","1:25159951:25161952","CGI_shore"]
[1,25165554,25165686,133,42,0.141182988959276,0.0479581136348226,0.0932248753244538,201.068891445705,"CHH","1:25165007:25167008","CGI_shore"]
[1,25222563,25222616,54,21,0.0365551754326394,0.00827695265612782,0.0282782227765116,114.963442100113,"CHH","1:25221926:25223926","CGI_shore"]
[1,25262575,25262670,96,25,0.34086342858046,0.154685573627844,0.186177854952616,119.912902554118,"CHH","Os01g0631400","intron","Os01g0631400","Six-hairpin glycosidase domain containing protein && sp|Q9SHJ5|GPAT1_ARATH Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GPAT1 PE=1 SV=1 && PF12710:haloacid dehalogenase-like hydrolase"]
[1,25262575,25262670,96,25,0.34086342858046,0.154685573627844,0.186177854952616,119.912902554118,"CHH","1:25260932:25262932","CGI_shore"]
[1,25454437,25454541,105,35,0.151259704598997,0.0730659422127513,0.0781937623862461,176.324879700849,"CHH","1:25454213:25456214","CGI_shore"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","1:25481645:25483646","CGI_shore"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","Os01g0635800","exon","Os01g0635800","Hypothetical gene && - && -"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","Os01g0635600","promoter","zinc finger homeodomain class homeobox transcription factor 5","Trimeric LpxA-like domain containing protein && - && -"]
[1,25483441,25483626,186,71,0.10904589251191,0.0443854117192017,0.0646604807927087,348.259377401744,"CHH","Os01g0635800","utr3","Os01g0635800","Hypothetical gene && - && -"]
[1,25523894,25524082,189,66,0.194831590119453,0.0841262220198416,0.110705368099611,401.753079623455,"CHH","Os01g0636600","promoter","Os01g0636600","Hypothetical conserved gene && sp|Q5VNN5|DEF1B_ORYSJ Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1B PE=2 SV=1 && PF01327:Polypeptide deformylase"]
[1,25523894,25524082,189,66,0.194831590119453,0.0841262220198416,0.110705368099611,401.753079623455,"CHH","1:25523311:25525312","CGI_shore"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","Os01g0636700","promoter","CSB","DEAD-like helicase, N-terminal domain containing protein && sp|A0A0P0WGX7|ENL1_ORYSJ SNF2 domain-containing protein ENL1 OS=Oryza sativa subsp. japonica OX=39947 GN=ENL1 PE=2 SV=1 && -"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","1:25532222:25534222","CGI_shore"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","1:25532432:25534433","CGI_shore"]
[1,25533501,25533755,255,85,0.256728540887274,0.111036190397482,0.145692350489792,576.536914390188,"CHH","1:25532748:25534749","CGI_shore"]
[1,25535363,25535420,58,17,0.214592603993189,0.112970514094908,0.101622089898281,80.5152530392341,"CHH","1:25534223:25535843","CGI"]
[1,25536251,25536311,61,21,0.12061532038783,0.0513697815892701,0.06924553879856,98.5519029110847,"CHH","1:25535843:25537844","CGI_shore"]
[1,25539321,25539459,139,59,0.224611412967604,0.129110124274177,0.0955012886934269,276.677457025256,"CHH","1:25538545:25540545","CGI_shore"]
[1,25539321,25539459,139,59,0.224611412967604,0.129110124274177,0.0955012886934269,276.677457025256,"CHH","1:25539079:25541080","CGI_shore"]
[1,25543658,25543902,245,102,0.351268524716547,0.233661854227205,0.117606670489343,499.926673871701,"CHH","Os01g0637100","promoter","F-box protein 29","Similar to predicted protein && sp|Q9SF47|PAH1_ARATH Phosphatidate phosphatase PAH1 OS=Arabidopsis thaliana OX=3702 GN=PAH1 PE=1 SV=1 && -"]
[1,25550000,25550369,370,110,0.393227992694882,0.262449825239352,0.13077816745553,518.795342811752,"CHH","1:25549948:25551949","CGI_shore"]
[1,25562862,25562972,111,34,0.329937635870351,0.203725373511742,0.126212262358608,152.768816327414,"CHH","1:25562014:25563953","CGI"]
[1,25562862,25562972,111,34,0.329937635870351,0.203725373511742,0.126212262358608,152.768816327414,"CHH","Os01g0637300","intron","Os01g0637300","Conserved hypothetical protein && sp|O60121|YH77_SCHPO Uncharacterized protein C16G5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC16G5.07c PE=3 SV=1 && -"]
[1,25579222,25579393,172,59,0.212882328347638,0.11778470900458,0.0950976193430586,287.697203244424,"CHH","1:25572135:25581561","CGI"]
[1,25579730,25579879,150,32,0.305003309724171,0.16819159791066,0.136811711813511,168.196547417473,"CG","1:25572135:25581561","CGI"]
[1,25595255,25595453,199,43,0.170497261258299,0.0199002893460551,0.150596971912244,310.597138534643,"CHH","1:25593574:25595575","CGI_shore"]
[1,25597352,25597540,189,65,0.114137915375504,0.0336979741786269,0.0804399411968775,328.140449789928,"CHH","Os01g0638000","promoter","Os01g0638000","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9AT54|SCGT_TOBAC Scopoletin glucosyltransferase OS=Nicotiana tabacum OX=4097 GN=TOGT1 PE=1 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[1,25597352,25597540,189,65,0.114137915375504,0.0336979741786269,0.0804399411968775,328.140449789928,"CHH","1:25596598:25598598","CGI_shore"]
[1,25642317,25642578,262,51,0.373057363070763,0.186875564857201,0.186181798213562,292.134034692391,"CHH","1:25641507:25643508","CGI_shore"]
[1,25642317,25642578,262,51,0.373057363070763,0.186875564857201,0.186181798213562,292.134034692391,"CHH","Os01g0639200","intron","suppressor of BTH-induced, NH1-mediated lesion mimic 6","Cinnamoyl-CoA reductase-like gene family member, Defense respons && sp|Q0JKZ0|SNL6_ORYSJ Cinnamoyl-CoA reductase-like SNL6 OS=Oryza sativa subsp. japonica OX=39947 GN=SNL6 PE=3 SV=1 && PF01073:3-beta hydroxysteroid dehydrogenase/isomerase family"]
[1,25651744,25651908,165,41,0.325022836981368,0.124712760952116,0.200310076029252,258.814252112479,"CHH","1:25650753:25652754","CGI_shore"]
[1,25651744,25651908,165,41,0.325022836981368,0.124712760952116,0.200310076029252,258.814252112479,"CHH","1:25651869:25653869","CGI_shore"]
[1,25711584,25711722,139,34,0.647965680771303,0.400950406967422,0.24701527380388,211.683313690721,"CG","Os01g0640000","intron","Os01g0640000","Similar to Carbonic anhydrase && sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1 && PF00484:Carbonic anhydrase"]
[1,25711584,25711722,139,34,0.647965680771303,0.400950406967422,0.24701527380388,211.683313690721,"CG","Os01g0640100","utr5","Os01g0640100","Conserved hypothetical protein && sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 && PF17917:RNase H-like domain found in reverse transcriptase"]
[1,25711584,25711722,139,34,0.647965680771303,0.400950406967422,0.24701527380388,211.683313690721,"CG","Os01g0640100","exon","Os01g0640100","Conserved hypothetical protein && sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 && PF17917:RNase H-like domain found in reverse transcriptase"]
[1,25713327,25713381,55,10,0.490426141536035,0.346499484273044,0.143926657262991,49.5436809682226,"CG","Os01g0640000","intron","Os01g0640000","Similar to Carbonic anhydrase && sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1 && PF00484:Carbonic anhydrase"]
[1,25751731,25751809,79,20,0.222374455447896,0.0755488085639548,0.146825646883942,109.844212320515,"CHH","Os01g0640700","promoter","Os01g0640700","Similar to vegetative cell wall protein gp1 && sp|C5XEK4|CSPL7_SORBI CASP-like protein 4U1 OS=Sorghum bicolor OX=4558 GN=Sb03g029220 PE=2 SV=1 && PF04535:Domain of unknown function (DUF588)"]
[1,25772295,25772412,118,29,0.1464034888794,0.037740306556164,0.108663182323236,138.693229115928,"CHH","1:25772058:25774059","CGI_shore"]
[1,25772295,25772412,118,29,0.1464034888794,0.037740306556164,0.108663182323236,138.693229115928,"CHH","1:25770991:25772991","CGI_shore"]
[1,25778985,25779169,185,56,0.146224668990823,0.054588031321745,0.0916366376690783,310.570781162719,"CHH","1:25777275:25779276","CGI_shore"]
[1,25778985,25779169,185,56,0.146224668990823,0.054588031321745,0.0916366376690783,310.570781162719,"CHH","Os01g0641700","intron","Os01g0641700","Uncharacterised protein family UPF0121 domain containing protein && - && PF03661:Uncharacterised protein family (UPF0121)"]
[1,25816958,25817092,135,55,0.222619964563804,0.101524052453184,0.121095912110619,277.05887418286,"CHH","1:25815107:25817351","CGI"]
[1,25846397,25846495,99,24,0.141700527097044,0.0289714552882813,0.112729071808763,179.300066529609,"CG","1:25840617:25846568","CGI"]
[1,25846410,25846471,62,11,0.0920834853509765,0.0113008338166937,0.0807826515342828,72.548196941208,"CHG","1:25840617:25846568","CGI"]
[1,25853336,25853397,62,15,0.889188069243597,0.767997303174483,0.121190766069114,55.2309317543013,"CG","1:25851493:25853494","CGI_shore"]
[1,25879252,25879493,242,56,0.39586371841239,0.152293611578619,0.243570106833771,332.512655743355,"CHH","1:25877625:25879625","CGI_shore"]
[1,25879252,25879493,242,56,0.39586371841239,0.152293611578619,0.243570106833771,332.512655743355,"CHH","1:25878114:25880115","CGI_shore"]
[1,25879252,25879493,242,56,0.39586371841239,0.152293611578619,0.243570106833771,332.512655743355,"CHH","1:25878198:25880198","CGI_shore"]
[1,25925237,25925351,115,36,0.297896215966894,0.138735106971494,0.1591611089954,156.823722751558,"CHH","Os01g0644000","promoter","Os01g0644000","Twin-arginine translocation pathway signal domain containing protein && - && -"]
[1,25925237,25925351,115,36,0.297896215966894,0.138735106971494,0.1591611089954,156.823722751558,"CHH","1:25922169:25961636","CGI"]
[1,25925812,25925915,104,31,0.305664588976953,0.0877171606998507,0.217947428277102,134.018681354409,"CHH","Os01g0644000","promoter","Os01g0644000","Twin-arginine translocation pathway signal domain containing protein && - && -"]
[1,25925812,25925915,104,31,0.305664588976953,0.0877171606998507,0.217947428277102,134.018681354409,"CHH","1:25922169:25961636","CGI"]
[1,26083683,26083753,71,26,0.104040767473482,0.0582681328403994,0.0457726346330829,111.379991154638,"CHH","Os01g0647100","promoter","PLASTIDIC NUCLEOTIDE TRANSPORT PROTEIN 1","ADP/ATP carrier protein family protein && sp|Q39002|TLC1_ARATH ADP,ATP carrier protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=AATP1 PE=1 SV=2 && PF03219:TLC ATP/ADP transporter"]
[1,26083683,26083753,71,26,0.104040767473482,0.0582681328403994,0.0457726346330829,111.379991154638,"CHH","1:26082383:26084384","CGI_shore"]
[1,26086270,26086327,58,22,0.066783031792184,0.00473672357146602,0.0620463082207179,91.4352777214189,"CHH","1:26086013:26088013","CGI_shore"]
[1,26086270,26086327,58,22,0.066783031792184,0.00473672357146602,0.0620463082207179,91.4352777214189,"CHH","Os01g0647200","utr3","Os01g0647200","Hypothetical conserved gene && - && -"]
[1,26086270,26086327,58,22,0.066783031792184,0.00473672357146602,0.0620463082207179,91.4352777214189,"CHH","Os01g0647200","exon","Os01g0647200","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","1:26117700:26119701","CGI_shore"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0648225","promoter","Os01g0648225","Hypothetical protein && sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica OX=39947 GN=AKT1 PE=2 SV=1 && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","1:26118562:26120945","CGI"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","exon","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","utr5","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","TSS","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26119247,26119303,57,26,0.192098254606359,0.0861235643337437,0.105974690272615,125.359855294732,"CHH","Os01g0647850","promoter","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26161099,26161153,55,6,0.409552559651302,0.0915704057870847,0.317982153864217,26.6445055677697,"CHG","1:26159161:26164236","CGI"]
[1,26174529,26174652,124,37,0.327130862383559,0.188464813537622,0.138666048845936,202.309734066605,"CHH","Os01g0648700","intron","Os01g0648700","Bromodomain containing protein && sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana OX=3702 GN=GTE9 PE=1 SV=1 && PF00439:Bromodomain"]
[1,26174529,26174652,124,37,0.327130862383559,0.188464813537622,0.138666048845936,202.309734066605,"CHH","1:26174493:26176493","CGI_shore"]
[1,26229983,26230053,71,17,0.292521279279369,0.132575648349933,0.159945630929436,87.6295133571836,"CHH","Os01g0650000","promoter","Os01g0650000","Similar to esterase && sp|Q9ZQI3|GDL40_ARATH GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana OX=3702 GN=At2g27360 PE=2 SV=1 && -"]
[1,26229983,26230053,71,17,0.292521279279369,0.132575648349933,0.159945630929436,87.6295133571836,"CHH","1:26226097:26231415","CGI"]
[1,26229983,26230053,71,17,0.292521279279369,0.132575648349933,0.159945630929436,87.6295133571836,"CHH","Os01g0649950","intron","Os01g0649950","Similar to H0814G11.9 protein && sp|Q9ZQI3|GDL40_ARATH GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana OX=3702 GN=At2g27360 PE=2 SV=1 && -"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26236396:26238396","CGI_shore"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26236615:26238616","CGI_shore"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26238368:26240368","CGI_shore"]
[1,26238345,26238410,66,19,0.0912994527117304,0.00565941016168828,0.0856400425500422,174.450418613478,"CHH","1:26238397:26239048","CGI"]
[1,26246084,26246143,60,20,0.202577324829477,0.0507433113814275,0.151834013448049,88.6434129801049,"CHH","1:26244895:26246896","CGI_shore"]
[1,26246084,26246143,60,20,0.202577324829477,0.0507433113814275,0.151834013448049,88.6434129801049,"CHH","1:26245928:26247928","CGI_shore"]
[1,26292491,26292639,149,44,0.341239227550309,0.222142534322831,0.119096693227478,200.157839705881,"CHH","1:26290498:26292499","CGI_shore"]
[1,26292491,26292639,149,44,0.341239227550309,0.222142534322831,0.119096693227478,200.157839705881,"CHH","1:26290980:26293910","CGI"]
[1,26292491,26292639,149,44,0.341239227550309,0.222142534322831,0.119096693227478,200.157839705881,"CHH","Os01g0651100","promoter","Os01g0651100","Pentatricopeptide repeat domain containing protein && sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=3 SV=1 && -"]
[1,26309688,26309926,239,49,0.375862139132752,0.200097171490559,0.175764967642192,243.687023084862,"CHH","Os01g0651350","promoter","Os01g0651350","Hypothetical protein && sp|Q94F40|GDL9_ARATH GDSL esterase/lipase At1g28600 OS=Arabidopsis thaliana OX=3702 GN=At1g28600 PE=2 SV=1 && -"]
[1,26309688,26309926,239,49,0.375862139132752,0.200097171490559,0.175764967642192,243.687023084862,"CHH","Os01g0651400","intron","Os01g0651400","Lipase, GDSL domain containing protein && - && -"]
[1,26309688,26309926,239,49,0.375862139132752,0.200097171490559,0.175764967642192,243.687023084862,"CHH","1:26308454:26313128","CGI"]
[1,26361868,26361928,61,16,0.110257722908488,0.0350936070295204,0.0751641158789679,79.4500678815604,"CHH","1:26360378:26362379","CGI_shore"]
[1,26361868,26361928,61,16,0.110257722908488,0.0350936070295204,0.0751641158789679,79.4500678815604,"CHH","1:26360803:26362804","CGI_shore"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","1:26386938:26388939","CGI_shore"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","Os01g0652300","promoter","Os01g0652300","Similar to Phospholipase A1-II 7 && sp|B9EYD3|PLA4_ORYSJ Phospholipase A1-II 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0652300 PE=2 SV=2 && -"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","1:26387105:26389105","CGI_shore"]
[1,26388802,26388906,105,25,0.11385807593952,0.0163675819646029,0.0974904939749173,115.38260371441,"CHH","1:26387707:26389707","CGI_shore"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","1:26387707:26389707","CGI_shore"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","1:26389106:26389449","CGI"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","1:26389449:26391450","CGI_shore"]
[1,26389307,26389476,170,47,0.214760202028996,0.0676404839228264,0.147119718106169,244.78656589559,"CHH","Target=(CGG)n:1-224;Class=Simple_repeat","repeat"]
[1,26414388,26414589,202,45,0.409476263743617,0.196418130055261,0.213058133688356,279.880199299903,"CHH","1:26412910:26424441","CGI"]
[1,26558720,26558773,54,19,0.157277615801938,0.0612767364594158,0.096000879342522,101.349959255512,"CHH","1:26556645:26565673","CGI"]
[1,26559029,26559155,127,50,0.163992243616126,0.0446648503986738,0.119327393217452,343.042665564464,"CHH","1:26556645:26565673","CGI"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","1:26571824:26573825","CGI_shore"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","1:26572156:26574156","CGI_shore"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","Os01g0654900","intron","Os01g0654900","Hypothetical conserved gene && - && -"]
[1,26572851,26572967,117,32,0.4037163904951,0.265243567575481,0.138472822919619,147.465089087258,"CHH","1:26572833:26574833","CGI_shore"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","1:26571824:26573825","CGI_shore"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","1:26572156:26574156","CGI_shore"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","Os01g0654900","intron","Os01g0654900","Hypothetical conserved gene && - && -"]
[1,26573110,26573253,144,49,0.0849915801208398,0.0267006773186285,0.0582909028022114,239.553834711593,"CHH","1:26572833:26574833","CGI_shore"]
[1,26799031,26799101,71,23,0.335899355439261,0.169211398411099,0.166687957028162,113.884751995751,"CHH","1:26797306:26799307","CGI_shore"]
[1,26799031,26799101,71,23,0.335899355439261,0.169211398411099,0.166687957028162,113.884751995751,"CHH","1:26797793:26799793","CGI_shore"]
[1,26799031,26799101,71,23,0.335899355439261,0.169211398411099,0.166687957028162,113.884751995751,"CHH","1:26798324:26800324","CGI_shore"]
[1,26967499,26967664,166,50,0.187009186294411,0.0975127620852273,0.0894964242091836,242.822710554119,"CHH","1:26952135:27003168","CGI"]
[1,27083458,27083711,254,40,0.301979489189238,0.101697908268428,0.20028158092081,189.318552376121,"CHH","Os01g0663300","intron","Os01g0663300","Similar to (1-4)-beta-mannan endohydrolase-like protein && sp|Q0JKM9|MAN1_ORYSJ Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MAN1 PE=2 SV=2 && PF00150:Cellulase (glycosyl hydrolase family 5)"]
[1,27083458,27083711,254,40,0.301979489189238,0.101697908268428,0.20028158092081,189.318552376121,"CHH","1:27082257:27084258","CGI_shore"]
[1,27083458,27083711,254,40,0.301979489189238,0.101697908268428,0.20028158092081,189.318552376121,"CHH","1:27082393:27084393","CGI_shore"]
[1,27186930,27187094,165,63,0.251684652365952,0.127251879778333,0.124432772587619,401.037821219706,"CHH","1:27186311:27188312","CGI_shore"]
[1,27186930,27187094,165,63,0.251684652365952,0.127251879778333,0.124432772587619,401.037821219706,"CHH","Os01g0665400","intron","Os01g0665400","Ribokinase family protein && sp|A1A6H3|RBSK_ARATH Ribokinase OS=Arabidopsis thaliana OX=3702 GN=RBSK PE=1 SV=1 && PF00294:pfkB family carbohydrate kinase"]
[1,27218083,27218191,109,24,0.2781364217143,0.0893297810258415,0.188806640688458,166.153408327303,"CHH","1:27217066:27219067","CGI_shore"]
[1,27218083,27218191,109,24,0.2781364217143,0.0893297810258415,0.188806640688458,166.153408327303,"CHH","1:27217291:27219291","CGI_shore"]
[1,27218083,27218191,109,24,0.2781364217143,0.0893297810258415,0.188806640688458,166.153408327303,"CHH","1:27218094:27220094","CGI_shore"]
[1,27225175,27225620,446,116,0.208261264275213,0.0824273647598665,0.125833899515347,607.166081530347,"CHH","1:27225077:27227078","CGI_shore"]
[1,27243129,27243302,174,58,0.33221135825916,0.207489693011456,0.124721665247704,298.905809632586,"CHH","Os01g0666400","promoter","Os01g0666400","Similar to predicted protein && - && -"]
[1,27243129,27243302,174,58,0.33221135825916,0.207489693011456,0.124721665247704,298.905809632586,"CHH","1:27241368:27243369","CGI_shore"]
[1,27243129,27243302,174,58,0.33221135825916,0.207489693011456,0.124721665247704,298.905809632586,"CHH","1:27242650:27244651","CGI_shore"]
[1,27260933,27261010,78,15,0.170230357353809,0.0328555677541675,0.137374789599641,96.1202289753748,"CHH","Os01g0666800","intron","Os01g0666800","Similar to predicted protein && sp|Q93VQ0|VCL1_ARATH Protein VACUOLELESS1 OS=Arabidopsis thaliana OX=3702 GN=VCL1 PE=1 SV=1 && PF04841:Vps16, N-terminal region|PF04840:Vps16, C-terminal region"]
[1,27279936,27280126,191,56,0.244519823683007,0.0460626386565695,0.198457185026437,394.250588289635,"CHH","Os01g0667200","promoter","GLYOXALASE II-1","Mitochondrial sulfur dioxygenase, Abiotic stress respons && sp|Q9C8L4|ETHE1_ARATH Persulfide dioxygenase ETHE1 homolog, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GLY3 PE=1 SV=3 && -"]
[1,27279936,27280126,191,56,0.244519823683007,0.0460626386565695,0.198457185026437,394.250588289635,"CHH","1:27278570:27280571","CGI_shore"]
[1,27279936,27280126,191,56,0.244519823683007,0.0460626386565695,0.198457185026437,394.250588289635,"CHH","1:27279261:27281261","CGI_shore"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","1:27297678:27299678","CGI_shore"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","1:27298825:27300825","CGI_shore"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","Os01g0667600","promoter","small GTP-binding protein OsRab11C1","Similar to GTP-binding protein && sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana OX=3702 GN=RABA1F PE=2 SV=1 && PF00071:Ras family"]
[1,27299647,27299949,303,107,0.293416289286619,0.162198264223119,0.1312180250635,499.980269689769,"CHH","1:27299679:27300366","CGI"]
[1,27300163,27300229,67,31,0.277619653903758,0.109881909508004,0.167737744395754,189.093797253018,"CHH","1:27298825:27300825","CGI_shore"]
[1,27300163,27300229,67,31,0.277619653903758,0.109881909508004,0.167737744395754,189.093797253018,"CHH","Os01g0667600","promoter","small GTP-binding protein OsRab11C1","Similar to GTP-binding protein && sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f OS=Arabidopsis thaliana OX=3702 GN=RABA1F PE=2 SV=1 && PF00071:Ras family"]
[1,27300163,27300229,67,31,0.277619653903758,0.109881909508004,0.167737744395754,189.093797253018,"CHH","1:27299679:27300366","CGI"]
[1,27315984,27316099,116,35,0.100639173216759,0.02649439941295,0.0741447738038089,172.671092015595,"CHH","1:27314814:27316814","CGI_shore"]
[1,27321289,27321453,165,50,0.249342638239979,0.121899054806309,0.12744358343367,261.458128685839,"CHH","Os01g0667800","promoter","Os01g0667800","Similar to U2 snRNP auxiliary factor, small subunit && sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[1,27321289,27321453,165,50,0.249342638239979,0.121899054806309,0.12744358343367,261.458128685839,"CHH","1:27321060:27323061","CGI_shore"]
[1,27378639,27378689,51,18,0.19402158764124,0.107848742152741,0.0861728454884989,81.6199556943143,"CHH","Os01g0668600","promoter","Os01g0668600","Curculin-like (mannose-binding) lectin domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF01453:D-mannose binding lectin|PF00069:Protein kinase domain|PF00954:S-locus glycoprotein domain"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668901","promoter","Os01g0668901","Protein kinase, catalytic domain domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668700","TES","Os01g0668700","Hypothetical protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF00954:S-locus glycoprotein domain|PF01453:D-mannose binding lectin"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668700","exon","Os01g0668700","Hypothetical protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF00954:S-locus glycoprotein domain|PF01453:D-mannose binding lectin"]
[1,27385811,27386007,197,62,0.140226410531819,0.0626545184544853,0.0775718920773334,311.729700833246,"CHH","Os01g0668700","utr3","Os01g0668700","Hypothetical protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF00954:S-locus glycoprotein domain|PF01453:D-mannose binding lectin"]
[1,27393468,27393595,128,35,0.146903743793485,0.0523246417277063,0.0945791020657785,177.559312370151,"CHH","1:27392941:27476746","CGI"]
[1,27464312,27464483,172,50,0.120578225123761,0.0290056738985191,0.0915725512252417,277.937033495736,"CHH","1:27392941:27476746","CGI"]
[1,27477738,27477899,162,36,0.459836798605209,0.294464548180542,0.165372250424667,179.47878481812,"CHH","1:27476746:27478747","CGI_shore"]
[1,27477738,27477899,162,36,0.459836798605209,0.294464548180542,0.165372250424667,179.47878481812,"CHH","Os01g0670100","promoter","Os01g0670100","Serine/threonine protein kinase-related domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF08276:PAN-like domain|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[1,27478257,27478344,88,40,0.325024245828529,0.221354532790156,0.103669713038372,187.624966949792,"CHH","1:27476746:27478747","CGI_shore"]
[1,27478257,27478344,88,40,0.325024245828529,0.221354532790156,0.103669713038372,187.624966949792,"CHH","Os01g0670100","promoter","Os01g0670100","Serine/threonine protein kinase-related domain containing protein && sp|P17801|KPRO_MAIZE Putative receptor protein kinase ZmPK1 OS=Zea mays OX=4577 GN=PK1 PE=2 SV=2 && PF08276:PAN-like domain|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[1,27490361,27490580,220,52,0.433631822998069,0.286496597385369,0.1471352256127,234.561328270607,"CHH","1:27489309:27491309","CGI_shore"]
[1,27563271,27563383,113,35,0.309157918011871,0.166593050055786,0.142564867956086,159.369711638251,"CHH","1:27563039:27565040","CGI_shore"]
[1,27580071,27580262,192,52,0.169453995340533,0.077247919290311,0.0922060760502223,232.667244579826,"CHH","1:27579166:27581166","CGI_shore"]
[1,27580071,27580262,192,52,0.169453995340533,0.077247919290311,0.0922060760502223,232.667244579826,"CHH","Os01g0672201","promoter","Os01g0672201","Homeobox domain containing protein && sp|Q9FFH1|RLT2_ARATH Homeobox-DDT domain protein RLT2 OS=Arabidopsis thaliana OX=3702 GN=RLT2 PE=1 SV=1 && PF00046:Homeodomain"]
[1,27703778,27703938,161,50,0.168085911522011,0.0819421479929663,0.0861437635290449,238.532035794908,"CHH","Os01g0674150","promoter","Os01g0674150","Conserved hypothetical protein && - && -"]
[1,27703778,27703938,161,50,0.168085911522011,0.0819421479929663,0.0861437635290449,238.532035794908,"CHH","Os01g0674100","promoter","Os01g0674100","Similar to ATP binding protein && sp|Q9C9U5|SIS8_ARATH Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF14381:Ethylene-responsive protein kinase Le-CTR1"]
[1,27703778,27703938,161,50,0.168085911522011,0.0819421479929663,0.0861437635290449,238.532035794908,"CHH","1:27701361:27708968","CGI"]
[1,27705169,27705409,241,61,0.275115803251551,0.117738208157144,0.157377595094407,343.134224829553,"CHH","1:27701361:27708968","CGI"]
[1,27722901,27723291,391,89,0.297029176740028,0.151054953722611,0.145974223017417,461.036454869237,"CHH","1:27723242:27725242","CGI_shore"]
[1,27722901,27723291,391,89,0.297029176740028,0.151054953722611,0.145974223017417,461.036454869237,"CHH","Os01g0674500","promoter","tubby-like protein 9, tubby-like protein 1, F-box protein 34","Similar to cDNA clone:J023048A08, full insert sequence && sp|Q5QM27|TLP1_ORYSJ Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP1 PE=2 SV=1 && PF01167:Tub family"]
[1,27722901,27723291,391,89,0.297029176740028,0.151054953722611,0.145974223017417,461.036454869237,"CHH","1:27721218:27723219","CGI_shore"]
[1,27753464,27753658,195,58,0.384162319321902,0.177499146006445,0.206663173315457,259.492963960032,"CHH","1:27752669:27754669","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27772942:27774943","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27773699:27774719","CGI"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27774114:27776114","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27774681:27776681","CGI_shore"]
[1,27774604,27774837,234,82,0.150385769581585,0.0300649105463535,0.120320859035231,486.618236649836,"CHH","1:27774719:27776720","CGI_shore"]
[1,27800528,27800641,114,38,0.087619486613888,0.0206067066700333,0.0670127799438547,184.770099640098,"CHH","1:27799404:27801404","CGI_shore"]
[1,27800528,27800641,114,38,0.087619486613888,0.0206067066700333,0.0670127799438547,184.770099640098,"CHH","Os01g0676200","promoter","Os01g0676200","Conserved hypothetical protein && - && -"]
[1,27800528,27800641,114,38,0.087619486613888,0.0206067066700333,0.0670127799438547,184.770099640098,"CHH","1:27799855:27800735","CGI"]
[1,27855074,27855232,159,48,0.314019592605297,0.167157341331167,0.14686225127413,260.110112800385,"CHH","1:27853445:27855445","CGI_shore"]
[1,27893140,27893206,67,31,0.105172955368876,0.051384055348934,0.0537889000199417,147.709282512603,"CHH","1:27882777:27900026","CGI"]
[1,27980413,27980612,200,62,0.277081987416504,0.11790484030112,0.159177147115384,366.610899538434,"CHH","1:27979680:27981681","CGI_shore"]
[1,28133820,28133944,125,29,0.179219592611439,0.0164386140722533,0.162780978539186,143.639359442594,"CHH","Os01g0682700","promoter","Os01g0682700","Conserved hypothetical protein && - && -"]
[1,28133820,28133944,125,29,0.179219592611439,0.0164386140722533,0.162780978539186,143.639359442594,"CHH","1:28133142:28134789","CGI"]
[1,28311085,28311308,224,73,0.288676590444388,0.149280234209075,0.139396356235313,355.688673775466,"CHH","1:28309190:28311191","CGI_shore"]
[1,28311085,28311308,224,73,0.288676590444388,0.149280234209075,0.139396356235313,355.688673775466,"CHH","1:28309842:28311842","CGI_shore"]
[1,28311085,28311308,224,73,0.288676590444388,0.149280234209075,0.139396356235313,355.688673775466,"CHH","1:28310638:28312639","CGI_shore"]
[1,28395273,28395382,110,18,0.247879846071808,0.103651214911967,0.14422863115984,84.8574301223723,"CHH","1:28394397:28396398","CGI_shore"]
[1,28409783,28410079,297,61,0.207263314483095,0.091374851518621,0.115888462964474,287.758705774219,"CHH","1:28408587:28410587","CGI_shore"]
[1,28409783,28410079,297,61,0.207263314483095,0.091374851518621,0.115888462964474,287.758705774219,"CHH","1:28409208:28411209","CGI_shore"]
[1,28411594,28411703,110,15,0.328856605140097,0.123294491436382,0.205562113703715,73.8400356039982,"CHG","1:28410149:28412149","CGI_shore"]
[1,28411594,28411703,110,15,0.328856605140097,0.123294491436382,0.205562113703715,73.8400356039982,"CHG","1:28411311:28413311","CGI_shore"]
[1,28411594,28411703,110,15,0.328856605140097,0.123294491436382,0.205562113703715,73.8400356039982,"CHG","1:28411539:28413540","CGI_shore"]
[1,28412303,28412502,200,74,0.131138862196881,0.0545031685778459,0.0766356936190351,353.165611455752,"CHH","1:28411311:28413311","CGI_shore"]
[1,28412303,28412502,200,74,0.131138862196881,0.0545031685778459,0.0766356936190351,353.165611455752,"CHH","1:28411539:28413540","CGI_shore"]
[1,28412303,28412502,200,74,0.131138862196881,0.0545031685778459,0.0766356936190351,353.165611455752,"CHH","1:28412150:28412602","CGI"]
[1,28474815,28474880,66,16,0.093954017121149,0.0169001201050298,0.0770538970161192,93.0061544994087,"CHH","1:28473425:28475426","CGI_shore"]
[1,28474815,28474880,66,16,0.093954017121149,0.0169001201050298,0.0770538970161192,93.0061544994087,"CHH","1:28474413:28476413","CGI_shore"]
[1,28477988,28478145,158,44,0.236804344049806,0.0320940023580642,0.204710341691741,365.632517611416,"CHH","Os01g0689800","promoter","Prolyl Oligopeptidase 3, PROLYL OLIGOPEPTIDASE 3","Alpha/beta hydrolase fold-1 domain containing protein && sp|Q6GL10|AB17C_XENTR Alpha/beta hydrolase domain-containing protein 17C OS=Xenopus tropicalis OX=8364 GN=abhd17c PE=2 SV=1 && PF12146:Serine aminopeptidase, S33"]
[1,28477988,28478145,158,44,0.236804344049806,0.0320940023580642,0.204710341691741,365.632517611416,"CHH","1:28477380:28479380","CGI_shore"]
[1,28477988,28478145,158,44,0.236804344049806,0.0320940023580642,0.204710341691741,365.632517611416,"CHH","1:28477552:28479553","CGI_shore"]
[1,28622909,28622988,80,8,0.657943691229683,0.198232699614402,0.459710991615281,43.6986699623176,"CG","1:28620945:28622946","CGI_shore"]
[1,28622909,28622988,80,8,0.657943691229683,0.198232699614402,0.459710991615281,43.6986699623176,"CG","Os01g0693400","promoter","APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 127","Pathogenesis-related transcriptional factor and ERF, DNA-binding domain containing protein && sp|Q8RZX9|Y1934_ORYSJ AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0693400 PE=2 SV=1 && PF02362:B3 DNA binding domain|PF00847:AP2 domain"]
[1,28622909,28622988,80,8,0.657943691229683,0.198232699614402,0.459710991615281,43.6986699623176,"CG","1:28621342:28623342","CGI_shore"]
[1,28630813,28630993,181,68,0.124976436150291,0.0368707874430499,0.0881056487072413,312.979432558054,"CHH","1:28630150:28632150","CGI_shore"]
[1,28644882,28644937,56,13,0.313404782038528,0.155285193533603,0.158119588504925,73.6895876973077,"CHH","1:28644876:28645842","CGI"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","1:28649523:28652086","CGI"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","exon","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","utr5","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","TSS","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28651659,28651836,178,55,0.116823035248129,0.040596041890104,0.0762269933580251,255.452415856266,"CHH","Os01g0693700","promoter","Os01g0693700","Similar to Nitrate reductase [NAD(P)H] && sp|P27968|NIA7_HORVU Nitrate reductase [NAD(P)H] OS=Hordeum vulgare OX=4513 GN=NAR-7 PE=2 SV=1 && -"]
[1,28705496,28705752,257,62,0.307520851175379,0.182782480368792,0.124738370806587,308.504848848747,"CHH","1:28704582:28706583","CGI_shore"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","1:28727037:28729037","CGI_shore"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","Os01g0694900","promoter","Os01g0694900","Epsin-like, N-terminal domain containing protein && sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana OX=3702 GN=At2g01600 PE=2 SV=2 && PF07651:ANTH domain"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","Os01g0694800","promoter","Os01g0694800","Conserved hypothetical protein && - && -"]
[1,28727614,28727725,112,26,0.349838993840032,0.147486036518264,0.202352957321768,126.963896313752,"CG","1:28708999:28728119","CGI"]
[1,28822918,28823072,155,38,0.232952769880238,0.0920000549283562,0.140952714951882,189.523295604739,"CHH","1:28821237:28823238","CGI_shore"]
[1,28822918,28823072,155,38,0.232952769880238,0.0920000549283562,0.140952714951882,189.523295604739,"CHH","1:28821754:28823754","CGI_shore"]
[1,28845379,28845577,199,69,0.223517654745551,0.125825868737243,0.097691786008308,326.274000060508,"CHH","1:28843656:28845656","CGI_shore"]
[1,29011642,29011700,59,20,0.158082330621854,0.0829493288155162,0.0751330018063377,88.2608625516788,"CHH","1:29005931:29011933","CGI"]
[1,29011858,29011962,105,52,0.203302232082389,0.0732883346332455,0.130013897449144,306.530415860742,"CHH","1:29005931:29011933","CGI"]
[1,29011858,29011962,105,52,0.203302232082389,0.0732883346332455,0.130013897449144,306.530415860742,"CHH","1:29011933:29013934","CGI_shore"]
[1,29060921,29061208,288,66,0.31955876447834,0.182339729297275,0.137219035181064,306.651314152291,"CHH","1:29059380:29061380","CGI_shore"]
[1,29062413,29062847,435,144,0.39465191959215,0.258797427314201,0.135854492277949,673.511834192568,"CHH","1:29061931:29063932","CGI_shore"]
[1,29156099,29156388,290,72,0.264232510783895,0.115323935313461,0.148908575470434,432.289304667348,"CHH","1:29155516:29157517","CGI_shore"]
[1,29156099,29156388,290,72,0.264232510783895,0.115323935313461,0.148908575470434,432.289304667348,"CHH","1:29156166:29158166","CGI_shore"]
[1,29156099,29156388,290,72,0.264232510783895,0.115323935313461,0.148908575470434,432.289304667348,"CHH","Os01g0703400","promoter","farnesyl diphosphate synthase 1, farnesyl diphosphate synthase, FDP synthase","Similar to Farnesyl pyrophosphate synthetase (FPP synthetase) (FPS) (Farnesyl diphosphate synthetase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] && sp|P49353|FPPS_MAIZE Farnesyl pyrophosphate synthase OS=Zea mays OX=4577 GN=FPS PE=2 SV=1 && PF00348:Polyprenyl synthetase"]
[1,29212397,29212590,194,29,0.47262603605392,0.00996098994116545,0.462665046112755,227.137499121477,"CHH","1:29211700:29213700","CGI_shore"]
[1,29363133,29363260,128,20,0.215338237505491,0.0294441319774567,0.185894105528034,103.51057135834,"CHH","Os01g0707300","promoter","Os01g0707300","Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13) && sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana OX=3702 GN=VTI13 PE=2 SV=1 && PF05008:Vesicle transport v-SNARE protein N-terminus"]
[1,29363133,29363260,128,20,0.215338237505491,0.0294441319774567,0.185894105528034,103.51057135834,"CHH","1:29344252:29365076","CGI"]
[1,29380318,29380423,106,27,0.28239617473805,0.13760719572201,0.14478897901604,104.938051876611,"CHH","1:29379029:29381030","CGI_shore"]
[1,29380318,29380423,106,27,0.28239617473805,0.13760719572201,0.14478897901604,104.938051876611,"CHH","1:29380086:29381286","CGI"]
[1,29425744,29425836,93,18,0.150341851303979,0.0601887549874337,0.0901530963165451,93.4333788620017,"CHH","1:29424273:29426274","CGI_shore"]
[1,29425744,29425836,93,18,0.150341851303979,0.0601887549874337,0.0901530963165451,93.4333788620017,"CHH","Os01g0708300","intron","Os01g0708300","Protein of unknown function DUF803 domain containing protein && sp|Q8RWH8|NIPA9_ARATH Probable magnesium transporter NIPA9 OS=Arabidopsis thaliana OX=3702 GN=At5g11960 PE=2 SV=1 && -"]
[1,29426495,29426658,164,46,0.398720972777596,0.252371259156008,0.146349713621588,236.134732699005,"CHH","Os01g0708300","intron","Os01g0708300","Protein of unknown function DUF803 domain containing protein && sp|Q8RWH8|NIPA9_ARATH Probable magnesium transporter NIPA9 OS=Arabidopsis thaliana OX=3702 GN=At5g11960 PE=2 SV=1 && -"]
[1,29498989,29499069,81,35,0.0818914041440395,0.0229560098641925,0.058935394279847,139.290442180554,"CHH","1:29498452:29500453","CGI_shore"]
[1,29498989,29499069,81,35,0.0818914041440395,0.0229560098641925,0.058935394279847,139.290442180554,"CHH","1:29499067:29501067","CGI_shore"]
[1,29524766,29525052,287,74,0.226201056418405,0.0984907931997113,0.127710263218694,388.486471357877,"CHH","1:29524484:29526485","CGI_shore"]
[1,29524766,29525052,287,74,0.226201056418405,0.0984907931997113,0.127710263218694,388.486471357877,"CHH","Os01g0710300","promoter","Os01g0710300","Conserved hypothetical protein && - && -"]
[1,29524766,29525052,287,74,0.226201056418405,0.0984907931997113,0.127710263218694,388.486471357877,"CHH","1:29523277:29525278","CGI_shore"]
[1,29525280,29525478,199,81,0.179814149584901,0.0763332965475739,0.103480853037327,529.026568269814,"CHH","1:29524484:29526485","CGI_shore"]
[1,29576835,29577243,409,87,0.659280168162306,0.45511447662376,0.204165691538547,466.111533200137,"CHH","1:29575230:29577230","CGI_shore"]
[1,29576835,29577243,409,87,0.659280168162306,0.45511447662376,0.204165691538547,466.111533200137,"CHH","1:29576172:29578172","CGI_shore"]
[1,29576835,29577243,409,87,0.659280168162306,0.45511447662376,0.204165691538547,466.111533200137,"CHH","1:29577231:29577480","CGI"]
[1,29596073,29596222,150,37,0.15702797435982,0.0596898258022314,0.0973381485575883,175.540335759952,"CHH","1:29594266:29596267","CGI_shore"]
[1,29596073,29596222,150,37,0.15702797435982,0.0596898258022314,0.0973381485575883,175.540335759952,"CHH","1:29595370:29597370","CGI_shore"]
[1,29645248,29645412,165,50,0.108454142716274,0.0156019254848956,0.0928522172313787,312.876594842289,"CHH","1:29643697:29645697","CGI_shore"]
[1,29645248,29645412,165,50,0.108454142716274,0.0156019254848956,0.0928522172313787,312.876594842289,"CHH","Os01g0713800","promoter","Os01g0713800","Similar to RNA binding && sp|B3LU25|KRR1_YEAS1 KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) OX=285006 GN=KRR1 PE=3 SV=1 && PF17903:Krr1 KH1 domain"]
[1,29660511,29660634,124,60,0.146584728567879,0.072559833941724,0.0740248946261546,279.599004579235,"CHH","1:29658772:29660772","CGI_shore"]
[1,29661638,29661781,144,45,0.244531705163875,0.1097210126403,0.134810692523575,253.159269722982,"CHH","1:29661168:29663169","CGI_shore"]
[1,29865366,29865517,152,40,0.132876639961676,0.0186783968327331,0.114198243128943,168.536330022253,"CHH","Target=RETROFIT_I-int:2968-3452;Class=LTR/Copia","repeat"]
[1,29926115,29926203,89,14,0.172783704307995,0.0104423538018756,0.16234135050612,75.3529164340024,"CHH","1:29925885:29927885","CGI_shore"]
[1,29978482,29978632,151,25,0.170652707254928,0.019032785454074,0.151619921800854,136.714131761725,"CHH","1:29976527:29978527","CGI_shore"]
[1,29978482,29978632,151,25,0.170652707254928,0.019032785454074,0.151619921800854,136.714131761725,"CHH","1:29978528:29978908","CGI"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","1:29989801:29991801","CGI_shore"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719350","utr3","Os01g0719350","Hypothetical protein && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && -"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719350","exon","Os01g0719350","Hypothetical protein && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && -"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719300","exon","SULPHATE TRANSPORTER 3;6","Similar to Sulfate transporter 3.1 (AST12) (AtST1) && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && PF01740:STAS domain|PF00916:Sulfate permease family"]
[1,29991432,29991526,95,16,0.351849498369288,0.123788872003537,0.228060626365752,81.109594410381,"CG","Os01g0719300","intron","SULPHATE TRANSPORTER 3;6","Similar to Sulfate transporter 3.1 (AST12) (AtST1) && sp|Q94LW6|SUT35_ARATH Probable sulfate transporter 3.5 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;5 PE=2 SV=1 && PF01740:STAS domain|PF00916:Sulfate permease family"]
[1,30030308,30030514,207,70,0.19934378064132,0.0770497762467072,0.122294004394613,384.752001470134,"CHH","1:30028798:30030798","CGI_shore"]
[1,30030308,30030514,207,70,0.19934378064132,0.0770497762467072,0.122294004394613,384.752001470134,"CHH","Os01g0720500","promoter","Os01g0720500","Similar to Type I chlorophyll a/b-binding protein b (Fragment) && sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB2R PE=2 SV=2 && PF00504:Chlorophyll A-B binding protein"]
[1,30119913,30120045,133,20,0.855269054498944,0.690182626249124,0.16508642824982,76.024858695732,"CG","Os01g0722425","promoter","Os01g0722425","Hypothetical protein && sp|Q9FKL2|MYB36_ARATH Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1 && PF00249:Myb-like DNA-binding domain"]
[1,30238523,30238800,278,81,0.115410952504718,0.0533551681016177,0.0620557844031004,331.374159791398,"CHH","1:30236001:30239457","CGI"]
[1,30252222,30252378,157,32,0.446226473333211,0.26526618196316,0.180960291370051,172.393003252889,"CHH","Os01g0725600","intron","Os01g0725600","Regulator of chromosome condensation, RCC1 domain containing protein && sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus OX=10090 GN=Herc2 PE=1 SV=3 && PF00415:Regulator of chromosome condensation (RCC1) repeat"]
[1,30252222,30252378,157,32,0.446226473333211,0.26526618196316,0.180960291370051,172.393003252889,"CHH","1:30251928:30253929","CGI_shore"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729100","intron","Os01g0729100","Protein of unknown function DUF92, transmembrane family protein && sp|Q9SYM0|VTE6_ARATH Protein VTE6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VTE6 PE=1 SV=1 && PF01940:Integral membrane protein DUF92"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729200","utr3","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729200","exon","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","1:30403340:30403711","CGI"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","Os01g0729200","utr5","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403341,30403731,391,82,0.628392276090354,0.348134760102402,0.280257515987951,580.764299187742,"CG","1:30403711:30405712","CGI_shore"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","Os01g0729100","intron","Os01g0729100","Protein of unknown function DUF92, transmembrane family protein && sp|Q9SYM0|VTE6_ARATH Protein VTE6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VTE6 PE=1 SV=1 && PF01940:Integral membrane protein DUF92"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","Os01g0729200","exon","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","1:30403340:30403711","CGI"]
[1,30403617,30403701,85,8,0.356847603627325,0.101253232774709,0.255594370852617,48.8957864747454,"CHG","Os01g0729200","utr5","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","Os01g0729100","intron","Os01g0729100","Protein of unknown function DUF92, transmembrane family protein && sp|Q9SYM0|VTE6_ARATH Protein VTE6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VTE6 PE=1 SV=1 && PF01940:Integral membrane protein DUF92"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","Os01g0729200","exon","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","1:30403340:30403711","CGI"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","Os01g0729200","utr5","Os01g0729200","Conserved hypothetical protein && - && -"]
[1,30403640,30403729,90,31,0.0825262070816536,0.0113529392669755,0.071173267814678,148.252814368771,"CHH","1:30403711:30405712","CGI_shore"]
[1,30420871,30420973,103,23,0.124747915674308,0.0346685264365322,0.0900793892377755,111.618517880162,"CHH","1:30419883:30421883","CGI_shore"]
[1,30425436,30425575,140,30,0.317770749555792,0.0979307206222697,0.219840028933522,171.9936379007,"CHH","Os01g0729900","promoter","Os01g0729900","Conserved hypothetical protein && - && -"]
[1,30425436,30425575,140,30,0.317770749555792,0.0979307206222697,0.219840028933522,171.9936379007,"CHH","1:30421884:30428057","CGI"]
[1,30451739,30451862,124,25,0.358965151554412,0.0294099795613852,0.329555171993027,171.707390051219,"CHH","1:30450512:30452513","CGI_shore"]
[1,30520127,30520187,61,15,0.0809735043963073,0.00337904879879228,0.0775944555975151,76.1732001321766,"CHH","1:30511940:30521611","CGI"]
[1,30520127,30520187,61,15,0.0809735043963073,0.00337904879879228,0.0775944555975151,76.1732001321766,"CHH","Os01g0731700","promoter","Os01g0731700","Hypothetical protein && sp|P16273|PRPX_HORVU Pathogen-related protein OS=Hordeum vulgare OX=4513 PE=2 SV=2 && -"]
[1,30549528,30549613,86,25,0.330690881823332,0.197159638820639,0.133531243002694,110.433883382635,"CHH","1:30549091:30551092","CGI_shore"]
[1,30650209,30650365,157,60,0.203636203823364,0.056935439221143,0.146700764602221,279.992987195213,"CHH","1:30649035:30651036","CGI_shore"]
[1,30650209,30650365,157,60,0.203636203823364,0.056935439221143,0.146700764602221,279.992987195213,"CHH","1:30649941:30650421","CGI"]
[1,30651640,30651819,180,42,0.171217200167909,0.0536274425637974,0.117589757604112,239.278569848208,"CHH","1:30650421:30652422","CGI_shore"]
[1,30697137,30697199,63,23,0.13632296800178,0.0142409525502246,0.122082015451555,110.763060847264,"CHH","Os01g0736100","promoter","UDP-dependent glucosyltransferase 706C1","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q4R1I9|ANGLT_ROSHC Anthocyanidin 5,3-O-glucosyltransferase OS=Rosa hybrid cultivar OX=128735 GN=RhGT1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[1,30697137,30697199,63,23,0.13632296800178,0.0142409525502246,0.122082015451555,110.763060847264,"CHH","1:30684710:30700439","CGI"]
[1,30752951,30753001,51,5,0.744054242783069,0.351033342773089,0.39302090000998,23.0747462535298,"CG","1:30751206:30753206","CGI_shore"]
[1,30752951,30753001,51,5,0.744054242783069,0.351033342773089,0.39302090000998,23.0747462535298,"CG","1:30751457:30753458","CGI_shore"]
[1,30752951,30753001,51,5,0.744054242783069,0.351033342773089,0.39302090000998,23.0747462535298,"CG","Os01g0737300","promoter","Os01g0737300","Similar to Phosphoesterase && sp|Q84JE8|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana OX=3702 GN=ZDP PE=1 SV=1 && PF00645:Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region|PF08645:Polynucleotide kinase 3 phosphatase"]
[1,30767393,30767459,67,17,0.356604382991462,0.231948015614909,0.124656367376553,69.375738720692,"CHH","Os01g0737600","promoter","Os01g0737600","Similar to OSIGBa0101A01.4 protein && - && PF01612:3'-5' exonuclease"]
[1,30767393,30767459,67,17,0.356604382991462,0.231948015614909,0.124656367376553,69.375738720692,"CHH","1:30761818:30773024","CGI"]
[1,31123946,31124006,61,17,0.178089979796634,0.0759433013628437,0.102146678433791,83.6734706228236,"CHH","Os01g0744550","intron","Os01g0744550","Hypothetical protein && sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0744400 PE=2 SV=1 && -"]
[1,31123946,31124006,61,17,0.178089979796634,0.0759433013628437,0.102146678433791,83.6734706228236,"CHH","Os01g0744400","intron","Os01g0744400","Similar to Isoform 2 of Golgin candidate 1 && sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0744400 PE=2 SV=1 && PF09787:Golgin subfamily A member 5"]
[1,31123946,31124006,61,17,0.178089979796634,0.0759433013628437,0.102146678433791,83.6734706228236,"CHH","1:31122918:31124919","CGI_shore"]
[1,31135967,31136104,138,39,0.310456903587925,0.166840838584837,0.143616065003088,195.596105177784,"CHH","1:31134576:31136576","CGI_shore"]
[1,31135967,31136104,138,39,0.310456903587925,0.166840838584837,0.143616065003088,195.596105177784,"CHH","1:31135158:31137159","CGI_shore"]
[1,31235714,31235871,158,9,0.310449068713344,0.0607449718945222,0.249704096818821,45.6981168443693,"CHG","Target=RETROFIT_I-int:1-2318;Class=LTR/Copia","repeat"]
[1,31235714,31235871,158,9,0.310449068713344,0.0607449718945222,0.249704096818821,45.6981168443693,"CHG","1:31234884:31236884","CGI_shore"]
[1,31281485,31281684,200,66,0.219869834010231,0.115842768788467,0.104027065221764,288.119559599886,"CHH","1:31277458:31288491","CGI"]
[1,31282670,31282843,174,56,0.306489633725992,0.158587921407921,0.147901712318072,283.29498627442,"CHH","1:31277458:31288491","CGI"]
[1,31282670,31282843,174,56,0.306489633725992,0.158587921407921,0.147901712318072,283.29498627442,"CHH","Os01g0747500","promoter","PYRC","Similar to Dihydroorotase (EC 3.5.2.3) && sp|Q0JJD1|PYRC_ORYSJ Dihydroorotase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=PYRC PE=2 SV=1 && PF01979:Amidohydrolase family"]
[1,31283540,31283635,96,27,0.493202788686078,0.230465766069348,0.262737022616729,177.796431493571,"CHH","1:31277458:31288491","CGI"]
[1,31283540,31283635,96,27,0.493202788686078,0.230465766069348,0.262737022616729,177.796431493571,"CHH","Os01g0747500","promoter","PYRC","Similar to Dihydroorotase (EC 3.5.2.3) && sp|Q0JJD1|PYRC_ORYSJ Dihydroorotase, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=PYRC PE=2 SV=1 && PF01979:Amidohydrolase family"]
[1,31306754,31306868,115,34,0.223112679788573,0.0887624863978245,0.134350193390748,186.71659837251,"CHH","1:31306464:31308465","CGI_shore"]
[1,31337681,31337756,76,18,0.32757006709565,0.157778055293686,0.169792011801964,92.0310571004778,"CHH","1:31337045:31339045","CGI_shore"]
[1,31337681,31337756,76,18,0.32757006709565,0.157778055293686,0.169792011801964,92.0310571004778,"CHH","Os01g0748600","promoter","Os01g0748600","Similar to Protein kinase family protein && sp|F4IS56|ILK1_ARATH Integrin-linked protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=ILK1 PE=1 SV=1 && -"]
[1,31337681,31337756,76,18,0.32757006709565,0.157778055293686,0.169792011801964,92.0310571004778,"CHH","1:31337273:31339274","CGI_shore"]
[1,31342020,31342238,219,65,0.228972765520891,0.0739385707659065,0.155034194754985,355.332350548662,"CHH","Os01g0748800","promoter","Os01g0748800","Similar to ZCN12 && sp|Q8VWH2|RFT1_ORYSJ Protein RICE FLOWERING LOCUS T 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFT1 PE=1 SV=1 && -"]
[1,31530220,31530325,106,36,0.0523538482675624,0.0210270289996672,0.0313268192678952,144.995742832889,"CHH","1:31529810:31531811","CGI_shore"]
[1,31538460,31538521,62,13,0.12511058955668,0.00436055523762762,0.120750034319052,79.5203473029428,"CHH","1:31536951:31538952","CGI_shore"]
[1,31538460,31538521,62,13,0.12511058955668,0.00436055523762762,0.120750034319052,79.5203473029428,"CHH","1:31537075:31539075","CGI_shore"]
[1,31679179,31679273,95,22,0.104982216505968,0.0397189255638266,0.0652632909421413,105.732140956669,"CHH","Os01g0755100","intron","Os01g0755100","Conserved hypothetical protein && sp|P16128|Y4849_ARATH Uncharacterized protein At4g18490 OS=Arabidopsis thaliana OX=3702 GN=At4g18490 PE=4 SV=3 && -"]
[1,31745771,31745821,51,20,0.122434851225203,0.0576998089716138,0.0647350422535897,104.713838863386,"CHH","1:31744374:31746374","CGI_shore"]
[1,31745771,31745821,51,20,0.122434851225203,0.0576998089716138,0.0647350422535897,104.713838863386,"CHH","1:31745689:31747690","CGI_shore"]
[1,31806640,31806746,107,20,0.179070262396481,0.0108596511524819,0.168210611243999,108.742746774363,"CHH","Os01g0757400","promoter","SKD1 protein, Vacuolar sorting protein4b, Vacuolar sorting protein 4b","Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). Splice isoform 2 && sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis OX=8364 GN=katnal2 PE=2 SV=1 && PF00004:ATPase family associated with various cellular activities (AAA)|PF17862:AAA+ lid domain"]
[1,31806640,31806746,107,20,0.179070262396481,0.0108596511524819,0.168210611243999,108.742746774363,"CHH","1:31804988:31806988","CGI_shore"]
[1,31870053,31870160,108,25,0.274900740452682,0.164953013750387,0.109947726702295,110.244498274213,"CHH","Os01g0758450","promoter","Os01g0758450","Hypothetical protein && sp|O04928|CDS1_ARATH Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=CDS1 PE=1 SV=1 && -"]
[1,31940349,31940447,99,26,0.178576628723864,0.076743891529856,0.101832737194008,138.708106834852,"CHH","Os01g0759200","promoter","CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 30","CBL(calcineurin B-like proteins)-interaction protein kinase protein, Resistance to Rice stripe virus (RSV) diseas && sp|Q5JLQ9|CIPKU_ORYSJ CBL-interacting protein kinase 30 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK30 PE=2 SV=1 && PF00069:Protein kinase domain|PF03822:NAF domain"]
[1,31940349,31940447,99,26,0.178576628723864,0.076743891529856,0.101832737194008,138.708106834852,"CHH","1:31940185:31942186","CGI_shore"]
[1,31968544,31968807,264,52,0.125240382244495,0.0450607353747925,0.0801796468697021,246.416121331216,"CHH","1:31967220:31969220","CGI_shore"]
[1,31968544,31968807,264,52,0.125240382244495,0.0450607353747925,0.0801796468697021,246.416121331216,"CHH","Os01g0759700","promoter","Os01g0759700","Similar to transcription regulator && sp|Q9UHR5|S30BP_HUMAN SAP30-binding protein OS=Homo sapiens OX=9606 GN=SAP30BP PE=1 SV=1 && PF07818:HCNGP-like protein"]
[1,32073511,32073589,79,20,0.22225234986779,0.0775197407735033,0.144732609094287,114.36161513404,"CHH","Os01g0762300","promoter","Os01g0762300","Similar to predicted protein && - && -"]
[1,32073511,32073589,79,20,0.22225234986779,0.0775197407735033,0.144732609094287,114.36161513404,"CHH","1:32072147:32074148","CGI_shore"]
[1,32073511,32073589,79,20,0.22225234986779,0.0775197407735033,0.144732609094287,114.36161513404,"CHH","Os01g0762400","intron","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32074014,32074124,111,35,0.0844798874523203,0.00764441041556047,0.0768354770367598,188.082135265517,"CHH","1:32072147:32074148","CGI_shore"]
[1,32074014,32074124,111,35,0.0844798874523203,0.00764441041556047,0.0768354770367598,188.082135265517,"CHH","Os01g0762400","intron","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32082817,32082941,125,30,0.209550810110436,0.100548025614017,0.109002784496419,146.067480586855,"CHH","1:32081834:32084326","CGI"]
[1,32082817,32082941,125,30,0.209550810110436,0.100548025614017,0.109002784496419,146.067480586855,"CHH","Os01g0762400","promoter","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32084350,32084423,74,23,0.0679347000644012,0.00629279562054266,0.0616419044438585,75.2079627257713,"CHH","Os01g0762400","promoter","Os01g0762400","Similar to Import inner membrane translocase subunit TIM50 && sp|Q8VYE2|TIM50_ARATH Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana OX=3702 GN=TIM50 PE=1 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,32084350,32084423,74,23,0.0679347000644012,0.00629279562054266,0.0616419044438585,75.2079627257713,"CHH","1:32084326:32086327","CGI_shore"]
[1,32176203,32177073,871,34,0.259286899253263,0.0820578036664467,0.177229095586816,211.516733055054,"CHH","Os01g0764400","promoter","chorismate mutase","Similar to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1) && sp|B4FNK8|CM1_MAIZE Chorismate mutase 1, chloroplastic OS=Zea mays OX=4577 GN=CM1 PE=1 SV=1 && -"]
[1,32176203,32177073,871,34,0.259286899253263,0.0820578036664467,0.177229095586816,211.516733055054,"CHH","1:32175671:32177672","CGI_shore"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","Os01g0765000","promoter","STRIPE 2","Putative dCMP deaminase, Chloroplast developmen && sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS=Drosophila melanogaster OX=7227 GN=CG6951 PE=2 SV=1 && -"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","1:32239126:32241127","CGI_shore"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","Os01g0765200","promoter","Os01g0765200","Conserved hypothetical protein && - && -"]
[1,32240406,32240529,124,41,0.195717702359514,0.0905853979888264,0.105132304370688,222.421678836834,"CHH","1:32240295:32241790","CGI"]
[1,32272930,32273044,115,26,0.189871612560613,0.0287500503772917,0.161121562183321,108.652157566149,"CHH","Os01g0766000","promoter","Os01g0766000","Multi antimicrobial extrusion protein MatE family protein && sp|F4I4Q3|DTX32_ARATH Protein DETOXIFICATION 32 OS=Arabidopsis thaliana OX=3702 GN=DTX32 PE=3 SV=1 && PF01554:MatE"]
[1,32273869,32274001,133,29,0.136779792733409,0.0172207036267655,0.119559089106643,120.906466979096,"CHH","Os01g0766000","promoter","Os01g0766000","Multi antimicrobial extrusion protein MatE family protein && sp|F4I4Q3|DTX32_ARATH Protein DETOXIFICATION 32 OS=Arabidopsis thaliana OX=3702 GN=DTX32 PE=3 SV=1 && PF01554:MatE"]
[1,32280312,32280389,78,37,0.133095367393115,0.0753292688668922,0.0577660985262229,148.569215018166,"CHH","1:32277056:32281552","CGI"]
[1,32280312,32280389,78,37,0.133095367393115,0.0753292688668922,0.0577660985262229,148.569215018166,"CHH","1:32280169:32282169","CGI_shore"]
[1,32282750,32282800,51,19,0.144200923154735,0.0550827958352454,0.0891181273194893,91.0355299333477,"CHH","1:32281552:32283553","CGI_shore"]
[1,32282750,32282800,51,19,0.144200923154735,0.0550827958352454,0.0891181273194893,91.0355299333477,"CHH","1:32282709:32284710","CGI_shore"]
[1,32310125,32310293,169,53,0.119605530246266,0.0267872122127693,0.0928183180334968,275.255746843826,"CHH","1:32309415:32311416","CGI_shore"]
[1,32310125,32310293,169,53,0.119605530246266,0.0267872122127693,0.0928183180334968,275.255746843826,"CHH","1:32309669:32311669","CGI_shore"]
[1,32333752,32333942,191,43,0.505499672831156,0.314957349727235,0.190542323103921,223.415637976756,"CHH","1:32332098:32334098","CGI_shore"]
[1,32333752,32333942,191,43,0.505499672831156,0.314957349727235,0.190542323103921,223.415637976756,"CHH","1:32332822:32334822","CGI_shore"]
[1,32333752,32333942,191,43,0.505499672831156,0.314957349727235,0.190542323103921,223.415637976756,"CHH","1:32333015:32335016","CGI_shore"]
[1,32376330,32376408,79,18,0.225649728804905,0.11717312067806,0.108476608126845,76.2685673372736,"CHH","1:32372173:32380706","CGI"]
[1,32384659,32384861,203,36,0.300120187821735,0.0131570365106295,0.286963151311105,233.896230566798,"CHH","1:32383285:32385285","CGI_shore"]
[1,32384659,32384861,203,36,0.300120187821735,0.0131570365106295,0.286963151311105,233.896230566798,"CHH","Os01g0768200","intron","Os01g0768200","TRAM, LAG1 and CLN8 homology domain containing protein && - && PF03798:TLC domain"]
[1,32498039,32498104,66,15,0.22405878642003,0.0439218287771679,0.180136957642862,74.1192684940309,"CHH","1:32497672:32498074","CGI"]
[1,32498039,32498104,66,15,0.22405878642003,0.0439218287771679,0.180136957642862,74.1192684940309,"CHH","1:32498074:32500075","CGI_shore"]
[1,32571998,32572072,75,24,0.175203582465981,0.0767876957923591,0.0984158866736218,123.453791007792,"CHH","1:32571434:32573435","CGI_shore"]
[1,32571998,32572072,75,24,0.175203582465981,0.0767876957923591,0.0984158866736218,123.453791007792,"CHH","1:32572044:32574044","CGI_shore"]
[1,32604938,32605123,186,56,0.292089449400313,0.162914533533686,0.129174915866627,273.954764874459,"CHH","1:32601343:32616276","CGI"]
[1,32692087,32692154,68,20,0.181948938985265,0.0805902050226644,0.1013587339626,108.129989738342,"CHH","Os01g0773400","promoter","Os01g0773400","Conserved hypothetical protein && - && -"]
[1,32717267,32717392,126,23,0.0951095718582376,0.00404114838461142,0.0910684234736261,117.397845034488,"CHH","1:32715672:32717673","CGI_shore"]
[1,32717267,32717392,126,23,0.0951095718582376,0.00404114838461142,0.0910684234736261,117.397845034488,"CHH","1:32715876:32717876","CGI_shore"]
[1,32949940,32950119,180,58,0.236182737291713,0.104963871147022,0.131218866144691,323.346990370106,"CHH","Os01g0778500","promoter","Os01g0778500","Similar to predicted protein && - && -"]
[1,32949940,32950119,180,58,0.236182737291713,0.104963871147022,0.131218866144691,323.346990370106,"CHH","1:32939864:32950931","CGI"]
[1,32950427,32950597,171,65,0.243823255343976,0.103409738148437,0.140413517195539,378.043157439866,"CHH","Os01g0778500","promoter","Os01g0778500","Similar to predicted protein && - && -"]
[1,32950427,32950597,171,65,0.243823255343976,0.103409738148437,0.140413517195539,378.043157439866,"CHH","1:32939864:32950931","CGI"]
[1,32952878,32953106,229,56,0.219570093567137,0.0937830857727021,0.125787007794435,278.838668492145,"CHH","1:32950931:32952932","CGI_shore"]
[1,32955067,32955314,248,57,0.445635232043019,0.270114109900188,0.175521122142831,349.540573018607,"CHH","1:32954719:32956719","CGI_shore"]
[1,32955067,32955314,248,57,0.445635232043019,0.270114109900188,0.175521122142831,349.540573018607,"CHH","Os01g0778700","promoter","Os01g0778700","Similar to Transmembrane protein 49 && sp|Q5XF36|KMS1_ARATH Vacuole membrane protein KMS1 OS=Arabidopsis thaliana OX=3702 GN=KMS1 PE=1 SV=1 && PF09335:SNARE associated Golgi protein"]
[1,33047051,33047117,67,33,0.101955534180979,0.00533993735712986,0.0966155968238496,312.324141293522,"CHH","1:33046635:33048663","CGI"]
[1,33047291,33047364,74,20,0.0762280663853216,0.0121018734446749,0.0641261929406467,103.736447812353,"CHH","1:33046635:33048663","CGI"]
[1,33082138,33082238,101,11,0.791671343737485,0.451307856724863,0.340363487012622,66.5675050820713,"CG","1:33081810:33084080","CGI"]
[1,33082138,33082238,101,11,0.791671343737485,0.451307856724863,0.340363487012622,66.5675050820713,"CG","Os01g0780900","utr5","Os01g0780900","Hypothetical conserved gene && - && PF12620:Protein of unknown function (DUF3778)"]
[1,33082138,33082238,101,11,0.791671343737485,0.451307856724863,0.340363487012622,66.5675050820713,"CG","Os01g0780900","exon","Os01g0780900","Hypothetical conserved gene && - && PF12620:Protein of unknown function (DUF3778)"]
[1,33149904,33150020,117,33,0.197782440714528,0.10677514369279,0.0910072970217388,146.231240064575,"CHH","1:33148236:33150237","CGI_shore"]
[1,33149904,33150020,117,33,0.197782440714528,0.10677514369279,0.0910072970217388,146.231240064575,"CHH","1:33149474:33151474","CGI_shore"]
[1,33149904,33150020,117,33,0.197782440714528,0.10677514369279,0.0910072970217388,146.231240064575,"CHH","Os01g0782200","intron","Os01g0782200","Diacylglycerol kinase, catalytic region domain containing protein && sp|F2Y4A3|SPHK2_ARATH Sphingosine kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SPHK2 PE=1 SV=1 && PF00781:Diacylglycerol kinase catalytic domain"]
[1,33176143,33176286,144,40,0.115827302706333,0.0107404976372633,0.10508680506907,189.033838712734,"CHH","1:33175144:33177144","CGI_shore"]
[1,33176143,33176286,144,40,0.115827302706333,0.0107404976372633,0.10508680506907,189.033838712734,"CHH","1:33176049:33178050","CGI_shore"]
[1,33225573,33225702,130,51,0.248154826102182,0.0751632335726177,0.172991592529564,260.51328354519,"CG","1:33223759:33225760","CGI_shore"]
[1,33225573,33225702,130,51,0.248154826102182,0.0751632335726177,0.172991592529564,260.51328354519,"CG","1:33225243:33240120","CGI"]
[1,33225573,33225702,130,51,0.248154826102182,0.0751632335726177,0.172991592529564,260.51328354519,"CG","Os01g0784200","promoter","Os01g0784200","Serine/threonine protein kinase-related domain containing protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF00954:S-locus glycoprotein domain|PF08276:PAN-like domain|PF11883:Domain of unknown function (DUF3403)|PF01453:D-mannose binding lectin"]
[1,33246935,33247189,255,74,0.362320699239969,0.212481387811613,0.149839311428356,404.494973244247,"CHH","Os01g0784600","intron","Os01g0784600","Similar to nodulation protein-related && - && -"]
[1,33246935,33247189,255,74,0.362320699239969,0.212481387811613,0.149839311428356,404.494973244247,"CHH","Os01g0784725","promoter","Os01g0784725","Hypothetical protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && -"]
[1,33250986,33251223,238,39,0.254909225252678,0.118942435243456,0.135966790009222,199.903085857279,"CHH","1:33249634:33251634","CGI_shore"]
[1,33250986,33251223,238,39,0.254909225252678,0.118942435243456,0.135966790009222,199.903085857279,"CHH","Os01g0784700","intron","Os01g0784700","Serine/threonine protein kinase-related domain containing protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF11883:Domain of unknown function (DUF3403)|PF08276:PAN-like domain"]
[1,33250986,33251223,238,39,0.254909225252678,0.118942435243456,0.135966790009222,199.903085857279,"CHH","Os01g0784725","intron","Os01g0784725","Hypothetical protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && -"]
[1,33252244,33252336,93,17,0.334859938962984,0.194951606032394,0.139908332930589,77.094278655328,"CHH","Os01g0784700","intron","Os01g0784700","Serine/threonine protein kinase-related domain containing protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF07714:Protein tyrosine kinase|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF11883:Domain of unknown function (DUF3403)|PF08276:PAN-like domain"]
[1,33252244,33252336,93,17,0.334859938962984,0.194951606032394,0.139908332930589,77.094278655328,"CHH","Os01g0784725","intron","Os01g0784725","Hypothetical protein && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && -"]
[1,33252244,33252336,93,17,0.334859938962984,0.194951606032394,0.139908332930589,77.094278655328,"CHH","1:33251940:33253941","CGI_shore"]
[1,33260866,33260981,116,45,0.159966889213129,0.0832225859482743,0.0767443032648551,209.491896114647,"CHH","1:33258917:33260918","CGI_shore"]
[1,33263393,33263453,61,14,0.138847812818225,0.0228940091417378,0.115953803676487,83.962405213963,"CHH","Os01g0784800","promoter","Os01g0784800","Flavodoxin/nitric oxide synthase domain containing protein && sp|Q9LSQ5|FQR1_ARATH NAD(P)H dehydrogenase (quinone) FQR1 OS=Arabidopsis thaliana OX=3702 GN=FQR1 PE=1 SV=1 && PF03358:NADPH-dependent FMN reductase"]
[1,33287699,33287763,65,7,0.601910848915691,0.300368006242733,0.301542842672958,32.2616578032663,"CHG","1:33286177:33288178","CGI_shore"]
[1,33304132,33304322,191,52,0.29782925768619,0.141848224087069,0.155981033599122,312.884060104086,"CHH","1:33302211:33304212","CGI_shore"]
[1,33304132,33304322,191,52,0.29782925768619,0.141848224087069,0.155981033599122,312.884060104086,"CHH","1:33302973:33304973","CGI_shore"]
[1,33304132,33304322,191,52,0.29782925768619,0.141848224087069,0.155981033599122,312.884060104086,"CHH","1:33303191:33305192","CGI_shore"]
[1,33365599,33365779,181,39,0.185165626075301,0.0447755763284373,0.140390049746864,253.405624767676,"CHH","1:33364481:33366481","CGI_shore"]
[1,33365599,33365779,181,39,0.185165626075301,0.0447755763284373,0.140390049746864,253.405624767676,"CHH","Os01g0786800","intron","Os01g0786800","Protein of unknown function DUF81 domain containing protein && sp|F4JIP9|TAUE5_ARATH Sulfite exporter TauE/SafE family protein 5 OS=Arabidopsis thaliana OX=3702 GN=At4g21250 PE=2 SV=1 && PF01925:Sulfite exporter TauE/SafE"]
[1,33388177,33388324,148,57,0.129461691472731,0.0402693878585968,0.0891923036141339,258.095953741386,"CHH","1:33386341:33388341","CGI_shore"]
[1,33388177,33388324,148,57,0.129461691472731,0.0402693878585968,0.0891923036141339,258.095953741386,"CHH","Os01g0787300","promoter","Os01g0787300","Hypothetical conserved gene && sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 && -"]
[1,33470509,33470612,104,36,0.196762317365386,0.0717356763923401,0.125026640973046,197.372289444811,"CHH","1:33470013:33472014","CGI_shore"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","1:33492535:33494535","CGI_shore"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","Os01g0789200","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 45","Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1) && sp|F4JEQ2|PBL23_ARATH Probable serine/threonine-protein kinase PBL23 OS=Arabidopsis thaliana OX=3702 GN=PBL23 PE=2 SV=1 && PF00069:Protein kinase domain"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","Os01g0789100","promoter","Os01g0789100","CDP-alcohol phosphatidyltransferase family protein && sp|Q5N9A1|PGPS1_ORYSJ CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0789100 PE=2 SV=1 && PF01066:CDP-alcohol phosphatidyltransferase"]
[1,33493244,33493487,244,66,0.222748652547851,0.10437782730641,0.118370825241441,332.366612702969,"CHH","1:33493016:33495017","CGI_shore"]
[1,33497059,33497476,418,82,0.385473898374642,0.20940327916131,0.176070619213332,448.52949424622,"CHH","1:33496332:33498333","CGI_shore"]
[1,33497059,33497476,418,82,0.385473898374642,0.20940327916131,0.176070619213332,448.52949424622,"CHH","Os01g0791151","promoter","Os01g0791151","Hypothetical gene && sp|Q0WRY5|PBL7_ARATH Probable serine/threonine-protein kinase PBL7 OS=Arabidopsis thaliana OX=3702 GN=PBL7 PE=1 SV=1 && -"]
[1,33633216,33633302,87,13,0.816722973548916,0.466489368415667,0.350233605133249,66.1493523540431,"CG","1:33631838:33633839","CGI_shore"]
[1,33633216,33633302,87,13,0.816722973548916,0.466489368415667,0.350233605133249,66.1493523540431,"CG","1:33632809:33634299","CGI"]
[1,33633216,33633302,87,13,0.816722973548916,0.466489368415667,0.350233605133249,66.1493523540431,"CG","Target=(CGG)n:2-160;Class=Simple_repeat","repeat"]
[1,33655343,33655440,98,18,0.0886392984478858,0.0134314451417002,0.0752078533061856,123.388931983997,"CHH","Os01g0794650","promoter","Os01g0794650","Similar to Sodium/hydrogen exchanger family protein && sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHX23 PE=1 SV=1 && -"]
[1,33655343,33655440,98,18,0.0886392984478858,0.0134314451417002,0.0752078533061856,123.388931983997,"CHH","1:33654012:33658348","CGI"]
[1,33655343,33655440,98,18,0.0886392984478858,0.0134314451417002,0.0752078533061856,123.388931983997,"CHH","Os01g0794500","promoter","Os01g0794500","Translation initiation factor SUI1 domain containing protein && sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1 && PF01253:Translation initiation factor SUI1"]
[1,33680631,33680962,332,126,0.254067877775447,0.127310142561315,0.126757735214132,696.348736481483,"CHH","1:33678877:33680877","CGI_shore"]
[1,33680631,33680962,332,126,0.254067877775447,0.127310142561315,0.126757735214132,696.348736481483,"CHH","1:33680878:33683760","CGI"]
[1,33681255,33681519,265,91,0.251690757325502,0.149015013894904,0.102675743430598,412.988027384001,"CHH","1:33680878:33683760","CGI"]
[1,33682266,33682316,51,17,0.376960122175078,0.280680522022251,0.0962796001528265,68.3516822178722,"CG","1:33680878:33683760","CGI"]
[1,33790520,33790774,255,62,0.532552712244823,0.305196426102488,0.227356286142335,292.963800650156,"CG","1:33788530:33790908","CGI"]
[1,33790520,33790774,255,62,0.532552712244823,0.305196426102488,0.227356286142335,292.963800650156,"CG","Os01g0798100","promoter","Os01g0798100","Similar to cDNA clone:J023120H23, full insert sequence && - && -"]
[1,33790520,33790774,255,62,0.532552712244823,0.305196426102488,0.227356286142335,292.963800650156,"CG","Os01g0798100","TSS","Os01g0798100","Similar to cDNA clone:J023120H23, full insert sequence && - && -"]
[1,33790520,33790774,255,62,0.532552712244823,0.305196426102488,0.227356286142335,292.963800650156,"CG","Os01g0798100","exon","Os01g0798100","Similar to cDNA clone:J023120H23, full insert sequence && - && -"]
[1,33790520,33790774,255,62,0.532552712244823,0.305196426102488,0.227356286142335,292.963800650156,"CG","Os01g0798100","utr5","Os01g0798100","Similar to cDNA clone:J023120H23, full insert sequence && - && -"]
[1,33877530,33877653,124,33,0.0729257825065287,0.00542130948756075,0.067504473018968,132.021434110781,"CHH","1:33877010:33879011","CGI_shore"]
[1,33877530,33877653,124,33,0.0729257825065287,0.00542130948756075,0.067504473018968,132.021434110781,"CHH","Os01g0800000","promoter","Os01g0800000","Conserved hypothetical protein && - && -"]
[1,33916366,33916541,176,37,0.215042225393085,0.0897656950641338,0.125276530328951,182.341863807143,"CHH","Os01g0800900","promoter","Os_F0743","Conserved hypothetical protein && sp|Q5EAF6|FB336_ARATH Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1 && -"]
[1,33916366,33916541,176,37,0.215042225393085,0.0897656950641338,0.125276530328951,182.341863807143,"CHH","1:33913493:33919745","CGI"]
[1,34006952,34007042,91,31,0.146483724656794,0.0595564393768824,0.0869272852799116,132.818616527171,"CHH","Os01g0802700","promoter","PIN PROTEIN 9","Auxin efflux carrier domain containing protein && sp|Q5VQY3|PIN9_ORYSJ Probable auxin efflux carrier component 9 OS=Oryza sativa subsp. japonica OX=39947 GN=PIN9 PE=2 SV=1 && PF03547:Membrane transport protein"]
[1,34006952,34007042,91,31,0.146483724656794,0.0595564393768824,0.0869272852799116,132.818616527171,"CHH","1:34006836:34008837","CGI_shore"]
[1,34096631,34096785,155,48,0.0984793392481225,0.0388059096654197,0.0596734295827028,216.026786658211,"CHH","1:34049335:34101050","CGI"]
[1,34102457,34102611,155,53,0.235292254799378,0.119805850869453,0.115486403929926,254.509415136092,"CHH","1:34101050:34103051","CGI_shore"]
[1,34204749,34204824,76,25,0.100116472430878,0.0338269089579518,0.0662895634729263,122.148362588895,"CHH","1:34201369:34207082","CGI"]
[1,34204749,34204824,76,25,0.100116472430878,0.0338269089579518,0.0662895634729263,122.148362588895,"CHH","ENSRNA049471791","promoter","U6atac","U6atac minor spliceosomal RNA && - && -"]
[1,34235138,34235197,60,4,0.50665187070765,0.308921355556826,0.197730515150825,18.2190334436492,"CHG","1:34234833:34236833","CGI_shore"]
[1,34474540,34474686,147,46,0.30355374455733,0.157709838638906,0.145843905918425,263.098635781202,"CHH","Os01g0811100","intron","20S proteasome alpha7 subunit, 20S proteasome subunit alpha7","Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7) && sp|Q9LSU0|PSA3_ORYSJ Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica OX=39947 GN=PAG1 PE=2 SV=1 && PF10584:Proteasome subunit A N-terminal signature|PF00227:Proteasome subunit"]
[1,34474540,34474686,147,46,0.30355374455733,0.157709838638906,0.145843905918425,263.098635781202,"CHH","1:34474237:34476237","CGI_shore"]
[1,34696269,34696548,280,78,0.525863373445818,0.299992535118986,0.225870838326833,614.659162529678,"CHH","Os01g0816100","promoter","NAC DOMAIN-CONTAINING PROTEIN 4","Similar to NAC domain protein && sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC068 PE=2 SV=1 && PF02365:No apical meristem (NAM) protein"]
[1,34696269,34696548,280,78,0.525863373445818,0.299992535118986,0.225870838326833,614.659162529678,"CHH","1:34695229:34697230","CGI_shore"]
[1,34696269,34696548,280,78,0.525863373445818,0.299992535118986,0.225870838326833,614.659162529678,"CHH","1:34695559:34697559","CGI_shore"]
[1,34698998,34699239,242,72,0.2211135530071,0.115183069449679,0.105930483557421,348.568306917826,"CHH","1:34697724:34699724","CGI_shore"]
[1,34698998,34699239,242,72,0.2211135530071,0.115183069449679,0.105930483557421,348.568306917826,"CHH","1:34698023:34700024","CGI_shore"]
[1,34871840,34871981,142,32,0.199621481773291,0.089446144344419,0.110175337428872,157.244101966645,"CHH","Os01g0818600","intron","Os01g0818600","Similar to Leucine-rich repeat transmembrane protein kinase && sp|C0LGD7|Y1684_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=1 SV=2 && PF07714:Protein tyrosine kinase"]
[1,34971714,34971836,123,15,0.722843186629839,0.371926495483955,0.350916691145884,62.2816645941809,"CHG","1:34970458:34972459","CGI_shore"]
[1,34976686,34976896,211,43,0.103585712856199,0.0386788029002723,0.0649069099559262,183.177567324995,"CHH","1:34975667:34977667","CGI_shore"]
[1,34976686,34976896,211,43,0.103585712856199,0.0386788029002723,0.0649069099559262,183.177567324995,"CHH","1:34976510:34978511","CGI_shore"]
[1,35112952,35113052,101,24,0.477114546508104,0.263893699551967,0.213220846956137,117.551132459396,"CG","1:35110383:35123330","CGI"]
[1,35126775,35126947,173,43,0.164063326086164,0.085266284375305,0.0787970417108587,184.219604714258,"CHH","1:35126196:35128196","CGI_shore"]
[1,35132148,35132239,92,29,0.35230303177823,0.183136462484509,0.169166569293721,156.94133491778,"CHH","Os01g0822900","promoter","non-specific lipid transfer protein 1.2, lipid transfer protein 1.2, type 1 non-specific lipid transfer protein 2","Similar to Lipid transfer protein && sp|A0AT33|NLTP4_LENCU Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris OX=3864 PE=1 SV=1 && PF00234:Protease inhibitor/seed storage/LTP family"]
[1,35190391,35190594,204,87,0.108369913261454,0.0438083908918792,0.0645615223695753,389.591007040929,"CHH","Os01g0823951","promoter","Os01g0823951","Conserved hypothetical protein && - && -"]
[1,35190391,35190594,204,87,0.108369913261454,0.0438083908918792,0.0645615223695753,389.591007040929,"CHH","1:35184897:35193894","CGI"]
[1,35235965,35236038,74,25,0.230536857679191,0.0895721435909643,0.140964714088227,117.780101353865,"CHH","1:35234231:35236232","CGI_shore"]
[1,35235965,35236038,74,25,0.230536857679191,0.0895721435909643,0.140964714088227,117.780101353865,"CHH","1:35235907:35238253","CGI"]
[1,35256077,35256355,279,92,0.133742215162391,0.0263039024028451,0.107438312759546,527.922823135771,"CHH","Os01g0825000","promoter","Os01g0825000","Similar to LOB domain protein 12 && sp|Q8L5T5|LBD15_ARATH LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2 && PF03195:Lateral organ boundaries (LOB) domain"]
[1,35256077,35256355,279,92,0.133742215162391,0.0263039024028451,0.107438312759546,527.922823135771,"CHH","1:35255584:35256224","CGI"]
[1,35256077,35256355,279,92,0.133742215162391,0.0263039024028451,0.107438312759546,527.922823135771,"CHH","1:35256004:35258004","CGI_shore"]
[1,35256077,35256355,279,92,0.133742215162391,0.0263039024028451,0.107438312759546,527.922823135771,"CHH","1:35256224:35258225","CGI_shore"]
[1,35263702,35263754,53,15,0.109536964566995,0.0112432455098188,0.0982937190571765,77.7048371639057,"CHH","1:35261843:35263843","CGI_shore"]
[1,35263702,35263754,53,15,0.109536964566995,0.0112432455098188,0.0982937190571765,77.7048371639057,"CHH","1:35262062:35264063","CGI_shore"]
[1,35320040,35320256,217,53,0.219809760242659,0.0607507123136616,0.159059047928998,347.144365595672,"CHH","Os01g0825700","promoter","Os01g0825700","Similar to VHS2 protein (Fragment) && sp|O80910|TOL6_ARATH TOM1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=TOL6 PE=1 SV=1 && PF00790:VHS domain|PF03127:GAT domain"]
[1,35320040,35320256,217,53,0.219809760242659,0.0607507123136616,0.159059047928998,347.144365595672,"CHH","1:35318983:35320984","CGI_shore"]
[1,35487546,35487604,59,21,0.195631310030216,0.104812469752524,0.0908188402776926,96.8007068949125,"CHH","1:35486025:35488026","CGI_shore"]
[1,35487546,35487604,59,21,0.195631310030216,0.104812469752524,0.0908188402776926,96.8007068949125,"CHH","1:35486961:35488961","CGI_shore"]
[1,35536254,35536385,132,36,0.347934977899116,0.206152465570511,0.141782512328605,187.734217801534,"CHH","1:35534468:35536469","CGI_shore"]
[1,35634371,35634423,53,17,0.114639057477648,0.0279377336011397,0.0867013238765088,73.6820453562126,"CHH","Os01g0832600","promoter","Os01g0832600","Similar to Leucoanthocyanidin dioxygenase-like protein && sp|Q9FFF6|JOX2_ARATH Jasmonate-induced oxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=JOX2 PE=1 SV=1 && PF14226:non-haem dioxygenase in morphine synthesis N-terminal|PF03171:2OG-Fe(II) oxygenase superfamily"]
[1,35667043,35667163,121,24,0.289045140354402,0.136955550501047,0.152089589853355,132.438517725602,"CHH","1:35666681:35668681","CGI_shore"]
[1,35716042,35716162,121,21,0.225692320586449,0.0740862344663638,0.151606086120085,118.676301321718,"CHH","1:35714871:35716872","CGI_shore"]
[1,35866677,35866742,66,29,0.113583136231198,0.0481824606720095,0.0654006755591888,129.164159146535,"CHH","1:35860693:35870051","CGI"]
[1,35867417,35867802,386,125,0.170075990583255,0.0752196138919285,0.0948563766913268,610.206679935626,"CHH","1:35860693:35870051","CGI"]
[1,35931350,35931416,67,13,0.162859266448597,0.0594541917174297,0.103405074731167,68.7570089037406,"CHH","Os01g0837900","promoter","Os01g0837900","Similar to Protein kinase AFC1 (EC 2.7.1.-) && sp|P51566|AFC1_ARATH Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana OX=3702 GN=AFC1 PE=2 SV=2 && PF00069:Protein kinase domain"]
[1,35931350,35931416,67,13,0.162859266448597,0.0594541917174297,0.103405074731167,68.7570089037406,"CHH","1:35929388:35931389","CGI_shore"]
[1,35951669,35952142,474,71,0.544688697585514,0.145301825286985,0.399386872298528,738.310147412379,"CG","1:35951533:35953502","CGI"]
[1,35951682,35952027,346,84,0.088022977836712,0.0101505232411488,0.0778724545955632,424.137629871334,"CHH","1:35951533:35953502","CGI"]
[1,35951748,35951895,148,12,0.246780129839039,0.034483326008481,0.212296803830558,59.5215413352041,"CHG","1:35951533:35953502","CGI"]
[1,36064584,36064645,62,8,0.516605784218551,0.155143225524703,0.361462558693848,39.9163345262992,"CHG","1:36062696:36064697","CGI_shore"]
[1,36064584,36064645,62,8,0.516605784218551,0.155143225524703,0.361462558693848,39.9163345262992,"CHG","1:36064354:36064757","CGI"]
[1,36137859,36138051,193,38,0.230459114053096,0.0679485091436955,0.162510604909401,212.171150855593,"CHH","1:36136440:36138441","CGI_shore"]
[1,36349027,36349107,81,22,0.363416393342712,0.0858652372910909,0.277551156051621,105.475190124937,"CG","Os01g0846400","exon","Os01g0846400","Conserved hypothetical protein && - && -"]
[1,36349027,36349107,81,22,0.363416393342712,0.0858652372910909,0.277551156051621,105.475190124937,"CG","Os01g0846400","utr3","Os01g0846400","Conserved hypothetical protein && - && -"]
[1,36349027,36349107,81,22,0.363416393342712,0.0858652372910909,0.277551156051621,105.475190124937,"CG","1:36337004:36349107","CGI"]
[1,36349050,36349192,143,11,0.211141819425701,0.0278840681569226,0.183257751268779,53.1561381409888,"CHG","Os01g0846400","exon","Os01g0846400","Conserved hypothetical protein && - && -"]
[1,36349050,36349192,143,11,0.211141819425701,0.0278840681569226,0.183257751268779,53.1561381409888,"CHG","Os01g0846400","utr3","Os01g0846400","Conserved hypothetical protein && - && -"]
[1,36349050,36349192,143,11,0.211141819425701,0.0278840681569226,0.183257751268779,53.1561381409888,"CHG","1:36349107:36351108","CGI_shore"]
[1,36349050,36349192,143,11,0.211141819425701,0.0278840681569226,0.183257751268779,53.1561381409888,"CHG","1:36337004:36349107","CGI"]
[1,36349589,36349653,65,14,0.387888253123031,0.174086344498398,0.213801908624633,76.6536422612911,"CHH","1:36349107:36351108","CGI_shore"]
[1,36393703,36393765,63,19,0.854771347900819,0.62060246187691,0.234168886023909,106.578581824123,"CG","1:36389949:36394168","CGI"]
[1,36393703,36393765,63,19,0.854771347900819,0.62060246187691,0.234168886023909,106.578581824123,"CG","Os01g0847200","promoter","mannose-1-phosphate guanyl transferase 1","Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase) && sp|Q941T9|GMPP2_ORYSJ Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0847200 PE=2 SV=1 && PF00483:Nucleotidyl transferase|PF00132:Bacterial transferase hexapeptide (six repeats)"]
[1,36393703,36393765,63,19,0.854771347900819,0.62060246187691,0.234168886023909,106.578581824123,"CG","1:36393507:36395507","CGI_shore"]
[1,36393706,36393933,228,65,0.267586129500155,0.0683103447212573,0.199275784778898,419.944846129371,"CHH","1:36389949:36394168","CGI"]
[1,36393706,36393933,228,65,0.267586129500155,0.0683103447212573,0.199275784778898,419.944846129371,"CHH","Os01g0847200","promoter","mannose-1-phosphate guanyl transferase 1","Similar to Mannose-1-phosphate guanyltransferase (EC 2.7.7.13) (ATP-mannose-1- phosphate guanylyltransferase) (GDP-mannose pyrophosphorylase) (NDP- hexose pyrophosphorylase) && sp|Q941T9|GMPP2_ORYSJ Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0847200 PE=2 SV=1 && PF00483:Nucleotidyl transferase|PF00132:Bacterial transferase hexapeptide (six repeats)"]
[1,36393706,36393933,228,65,0.267586129500155,0.0683103447212573,0.199275784778898,419.944846129371,"CHH","1:36393507:36395507","CGI_shore"]
[1,36433533,36433712,180,43,0.406358601095406,0.156310737826482,0.250047863268924,279.507677832239,"CHH","Os01g0848200","intron","guanine nucleotide exchange factor for Rop 5, pyrroline-5-carboxylate synthetase 2, proline carboxylate synthase 2","Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)] && sp|Q941T1|P5CS2_ORYSJ Delta-1-pyrroline-5-carboxylate synthase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=P5CS2 PE=2 SV=1 && PF00171:Aldehyde dehydrogenase family|PF00696:Amino acid kinase family"]
[1,36435323,36435401,79,15,0.183216359991901,0.0278817512110849,0.155334608780816,87.7978029308367,"CHH","Os01g0848200","intron","guanine nucleotide exchange factor for Rop 5, pyrroline-5-carboxylate synthetase 2, proline carboxylate synthase 2","Similar to Delta 1-pyrroline-5-carboxylate synthetase (P5CS) [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase)] && sp|Q941T1|P5CS2_ORYSJ Delta-1-pyrroline-5-carboxylate synthase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=P5CS2 PE=2 SV=1 && PF00171:Aldehyde dehydrogenase family|PF00696:Amino acid kinase family"]
[1,36494978,36495033,56,25,0.134130231143419,0.0668394896758565,0.0672907414675621,108.049978676832,"CHH","1:36489027:36498578","CGI"]
[1,36494978,36495033,56,25,0.134130231143419,0.0668394896758565,0.0672907414675621,108.049978676832,"CHH","Os01g0849500","promoter","Os01g0849500","Protein of unknown function DUF3339 domain containing protein && - && -"]
[1,36508121,36508336,216,60,0.164409216145261,0.0521009238193797,0.112308292325881,334.187885937212,"CHH","1:36506867:36508868","CGI_shore"]
[1,36508121,36508336,216,60,0.164409216145261,0.0521009238193797,0.112308292325881,334.187885937212,"CHH","1:36508048:36510049","CGI_shore"]
[1,36633440,36633674,235,80,0.168660782757199,0.0663405009526497,0.10232028180455,459.275642981949,"CHH","Os01g0850800","promoter","LACCASE 9","Laccase-8 && sp|Q0JHP8|LAC8_ORYSJ Laccase-8 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC8 PE=3 SV=2 && PF07732:Multicopper oxidase|PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[1,36633440,36633674,235,80,0.168660782757199,0.0663405009526497,0.10232028180455,459.275642981949,"CHH","1:36625655:36641830","CGI"]
[1,36735172,36735255,84,14,0.108468397608243,0.0303342290571007,0.0781341685511423,101.576349358975,"CHH","1:36733529:36735530","CGI_shore"]
[1,36735172,36735255,84,14,0.108468397608243,0.0303342290571007,0.0781341685511423,101.576349358975,"CHH","Os01g0852900","intron","Os01g0852900","Pentatricopeptide repeat domain containing protein && sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1 && -"]
[1,36744354,36744609,256,75,0.372524629690954,0.178814134944405,0.193710494746548,458.394035890378,"CHH","1:36744330:36746331","CGI_shore"]
[1,36782862,36782926,65,18,0.152329006289524,0.0683943714877116,0.0839346348018123,82.9057764724873,"CHH","1:36780999:36782999","CGI_shore"]
[1,36782862,36782926,65,18,0.152329006289524,0.0683943714877116,0.0839346348018123,82.9057764724873,"CHH","1:36781899:36783899","CGI_shore"]
[1,36784428,36784478,51,21,0.292645017558926,0.12808868560365,0.164556331955276,109.980120701966,"CHH","1:36783562:36785563","CGI_shore"]
[1,36784428,36784478,51,21,0.292645017558926,0.12808868560365,0.164556331955276,109.980120701966,"CHH","1:36783900:36797798","CGI"]
[1,36784534,36784633,100,35,0.26102013727742,0.124384034317719,0.136636102959701,169.914586499427,"CHH","1:36783562:36785563","CGI_shore"]
[1,36784534,36784633,100,35,0.26102013727742,0.124384034317719,0.136636102959701,169.914586499427,"CHH","1:36783900:36797798","CGI"]
[1,36930131,36930190,60,25,0.223733105681228,0.133412201308433,0.0903209043727947,121.37535422124,"CHH","1:36930117:36930750","CGI"]
[1,36962374,36962469,96,29,0.0438726843777246,0.00595111763732958,0.0379215667403951,131.638361918172,"CHH","1:36961632:36963632","CGI_shore"]
[1,36962374,36962469,96,29,0.0438726843777246,0.00595111763732958,0.0379215667403951,131.638361918172,"CHH","1:36961801:36963802","CGI_shore"]
[1,37032462,37032568,107,22,0.163524110302175,0.0700386723022643,0.0934854379999103,113.154121693338,"CHH","Os01g0857000","promoter","Os01g0857000","Double-stranded RNA-binding-like domain containing protein && sp|Q5YDB5|CPL2_ARATH RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 && PF00035:Double-stranded RNA binding motif|PF03031:NLI interacting factor-like phosphatase"]
[1,37032462,37032568,107,22,0.163524110302175,0.0700386723022643,0.0934854379999103,113.154121693338,"CHH","1:37031885:37033886","CGI_shore"]
[1,37032462,37032568,107,22,0.163524110302175,0.0700386723022643,0.0934854379999103,113.154121693338,"CHH","1:37032449:37034449","CGI_shore"]
[1,37074857,37074952,96,33,0.106764702331343,0.00535435940232582,0.101410342929017,158.406628818535,"CHH","1:37073690:37075691","CGI_shore"]
[1,37074857,37074952,96,33,0.106764702331343,0.00535435940232582,0.101410342929017,158.406628818535,"CHH","1:37074392:37076392","CGI_shore"]
[1,37074857,37074952,96,33,0.106764702331343,0.00535435940232582,0.101410342929017,158.406628818535,"CHH","Os01g0857900","promoter","OsWD40-28","Conserved hypothetical protein && sp|Q93ZG3|ACSA1_ARATH WD repeat-containing protein ATCSA-1 OS=Arabidopsis thaliana OX=3702 GN=ATCSA-1 PE=1 SV=1 && -"]
[1,37105972,37106046,75,22,0.213101977964165,0.0945094093841438,0.118592568580022,117.512931009653,"CHH","1:37105229:37107229","CGI_shore"]
[1,37179995,37180223,229,12,0.161676558527775,0.0589159149231458,0.10276064360463,84.7025462608392,"CHH","Os01g0859400","exon","Protein phosphatase 16","Protein-tyrosine phosphatase, dual specificity domain containing protein && sp|Q5N7C7|LG2_ORYSJ Transcription factor LG2 OS=Oryza sativa subsp. japonica OX=39947 GN=LG2 PE=1 SV=1 && -"]
[1,37179995,37180223,229,12,0.161676558527775,0.0589159149231458,0.10276064360463,84.7025462608392,"CHH","Os01g0859400","utr3","Protein phosphatase 16","Protein-tyrosine phosphatase, dual specificity domain containing protein && sp|Q5N7C7|LG2_ORYSJ Transcription factor LG2 OS=Oryza sativa subsp. japonica OX=39947 GN=LG2 PE=1 SV=1 && -"]
[1,37333559,37333703,145,20,0.0732999315605328,0.00826805987792801,0.0650318716826048,118.083867378096,"CHH","1:37332107:37334107","CGI_shore"]
[1,37333559,37333703,145,20,0.0732999315605328,0.00826805987792801,0.0650318716826048,118.083867378096,"CHH","Os01g0862800","promoter","NAC DOMAIN-CONTAINING PROTEIN 59","NAC (NAM ATAF1/2 CUC2) transcription factor, Early and transient regulator of abiotic stress response && sp|Q9FMR3|NAC90_ARATH NAC domain-containing protein 90 OS=Arabidopsis thaliana OX=3702 GN=NAC090 PE=1 SV=1 && PF02365:No apical meristem (NAM) protein"]
[1,37373664,37373734,71,17,0.267677639156022,0.132028378760731,0.135649260395291,105.058276793025,"CHH","1:37373376:37375376","CGI_shore"]
[1,37394997,37395059,63,16,0.415197909695554,0.267171021380101,0.148026888315453,86.6196728849888,"CHH","1:37393439:37395439","CGI_shore"]
[1,37394997,37395059,63,16,0.415197909695554,0.267171021380101,0.148026888315453,86.6196728849888,"CHH","Os01g0864100","promoter","Os01g0864100","Hypothetical protein && sp|Q94CV1|OFP8_ORYSJ Transcription repressor OFP8 OS=Oryza sativa subsp. japonica OX=39947 GN=OFP8 PE=1 SV=1 && PF04844:Transcriptional repressor, ovate"]
[1,37531186,37531290,105,20,0.336565697656063,0.186803597603522,0.149762100052541,95.9650217648185,"CHH","Os01g0866750","promoter","Os01g0866750","Hypothetical conserved gene && - && -"]
[1,37531186,37531290,105,20,0.336565697656063,0.186803597603522,0.149762100052541,95.9650217648185,"CHH","1:37530730:37532731","CGI_shore"]
[1,37531186,37531290,105,20,0.336565697656063,0.186803597603522,0.149762100052541,95.9650217648185,"CHH","1:37531282:37533282","CGI_shore"]
[1,37598011,37598229,219,49,0.340844539554719,0.0257310050800663,0.315113534474652,378.23271072172,"CHH","1:37596537:37598537","CGI_shore"]
[1,37598011,37598229,219,49,0.340844539554719,0.0257310050800663,0.315113534474652,378.23271072172,"CHH","1:37596838:37598839","CGI_shore"]
[1,37598011,37598229,219,49,0.340844539554719,0.0257310050800663,0.315113534474652,378.23271072172,"CHH","1:37597882:37599882","CGI_shore"]
[1,37617833,37618125,293,92,0.317211613780833,0.111323308265702,0.205888305515131,606.544818517691,"CHH","Os01g0868301","intron","Os01g0868301","Hypothetical protein && sp|Q9SB58|ZDH19_ARATH Protein S-acyltransferase 8 OS=Arabidopsis thaliana OX=3702 GN=PAT08 PE=1 SV=2 && -"]
[1,37617833,37618125,293,92,0.317211613780833,0.111323308265702,0.205888305515131,606.544818517691,"CHH","Os01g0868200","intron","Os01g0868200","Zinc finger, DHHC-type domain containing protein && sp|Q9SB58|ZDH19_ARATH Protein S-acyltransferase 8 OS=Arabidopsis thaliana OX=3702 GN=PAT08 PE=1 SV=2 && PF01529:DHHC palmitoyltransferase"]
[1,37907297,37907442,146,34,0.222120518814067,0.0688867250325604,0.153233793781506,161.733489997061,"CHH","1:37906765:37908766","CGI_shore"]
[1,37927504,37927636,133,41,0.148837068414835,0.00959674466800759,0.139240323746827,319.272548147242,"CHH","1:37926464:37928465","CGI_shore"]
[1,37992329,37992411,83,14,0.347486372909958,0.189900748230903,0.157585624679055,90.3068278241815,"CHH","Os01g0875400","promoter","Os01g0875400","Ubiquitin domain containing protein && sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis thaliana OX=3702 GN=At4g06599 PE=2 SV=1 && PF00240:Ubiquitin family|PF03031:NLI interacting factor-like phosphatase"]
[1,37992329,37992411,83,14,0.347486372909958,0.189900748230903,0.157585624679055,90.3068278241815,"CHH","1:37991904:37993905","CGI_shore"]
[1,37992329,37992411,83,14,0.347486372909958,0.189900748230903,0.157585624679055,90.3068278241815,"CHH","1:37992124:37994124","CGI_shore"]
[1,38006627,38006704,78,25,0.294039385289855,0.173653384194998,0.120386001094857,136.936784182955,"CHH","1:38005277:38007277","CGI_shore"]
[1,38124653,38124765,113,25,0.226193157324392,0.0917511060609264,0.134442051263465,123.808030120246,"CHH","1:38122680:38124680","CGI_shore"]
[1,38124653,38124765,113,25,0.226193157324392,0.0917511060609264,0.134442051263465,123.808030120246,"CHH","1:38124681:38124911","CGI"]
[1,38124653,38124765,113,25,0.226193157324392,0.0917511060609264,0.134442051263465,123.808030120246,"CHH","1:38123666:38125667","CGI_shore"]
[1,38167647,38167802,156,53,0.183500217132994,0.0940238309636094,0.0894763861693843,231.471736264514,"CHH","1:38165506:38182977","CGI"]
[1,38308442,38308501,60,22,0.0968315849995241,0.0178490410697854,0.0789825439297387,110.936430240527,"CHH","1:38305930:38320996","CGI"]
[1,38308442,38308501,60,22,0.0968315849995241,0.0178490410697854,0.0789825439297387,110.936430240527,"CHH","Os01g0882500","promoter","Os01g0882500","Similar to NADH dehydrogenase I subunit N && sp|Q9LVM2|NDHN_ARATH NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhN PE=2 SV=1 && PF11909:NADH-quinone oxidoreductase cyanobacterial subunit N"]
[1,38470179,38470282,104,37,0.10607237854537,0.0525909866219858,0.0534813919233844,131.843828363713,"CHH","Os01g0885500","exon","Os01g0885500","Hypothetical conserved gene && - && -"]
[1,38470179,38470282,104,37,0.10607237854537,0.0525909866219858,0.0534813919233844,131.843828363713,"CHH","1:38469953:38470339","CGI"]
[1,38470179,38470282,104,37,0.10607237854537,0.0525909866219858,0.0534813919233844,131.843828363713,"CHH","1:38468633:38470633","CGI_shore"]
[1,38597017,38597116,100,26,0.592324254594645,0.287158337053186,0.305165917541459,104.742648529986,"CG","1:38596994:38597961","CGI"]
[1,38669547,38669854,308,71,0.477211524452788,0.306337244879578,0.17087427957321,349.705463332326,"CHH","1:38668527:38670527","CGI_shore"]
[1,38669547,38669854,308,71,0.477211524452788,0.306337244879578,0.17087427957321,349.705463332326,"CHH","1:38669291:38671292","CGI_shore"]
[1,38670305,38670403,99,12,0.222464546061048,0.0689360603832797,0.153528485677769,86.046144093349,"CHH","1:38668527:38670527","CGI_shore"]
[1,38670305,38670403,99,12,0.222464546061048,0.0689360603832797,0.153528485677769,86.046144093349,"CHH","1:38669291:38671292","CGI_shore"]
[1,38670305,38670403,99,12,0.222464546061048,0.0689360603832797,0.153528485677769,86.046144093349,"CHH","1:38670232:38672232","CGI_shore"]
[1,38701746,38701841,96,18,0.128296337141536,0.00786574744894831,0.120430589692588,100.469779547214,"CHH","Os01g0890050","promoter","Os01g0890050","Hypothetical protein && sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana OX=3702 GN=At2g19130 PE=2 SV=1 && -"]
[1,38701746,38701841,96,18,0.128296337141536,0.00786574744894831,0.120430589692588,100.469779547214,"CHH","Os01g0890001","intron","Os01g0890001","Hypothetical conserved gene && - && -"]
[1,38784921,38785020,100,30,0.758927212498047,0.395044717210977,0.36388249528707,184.697390438643,"CG","1:38772431:38786253","CGI"]
[1,38908668,38908898,231,74,0.280211965706882,0.154815765787673,0.125396199919209,375.453624588424,"CHH","1:38907016:38909017","CGI_shore"]
[1,38908668,38908898,231,74,0.280211965706882,0.154815765787673,0.125396199919209,375.453624588424,"CHH","1:38907318:38909318","CGI_shore"]
[1,39209358,39209592,235,42,0.370329931658982,0.0849849005049527,0.28534503115403,247.239834014009,"CHH","1:39208023:39210023","CGI_shore"]
[1,39209358,39209592,235,42,0.370329931658982,0.0849849005049527,0.28534503115403,247.239834014009,"CHH","1:39208120:39210121","CGI_shore"]
[1,39209358,39209592,235,42,0.370329931658982,0.0849849005049527,0.28534503115403,247.239834014009,"CHH","1:39209093:39211093","CGI_shore"]
[1,39209358,39209592,235,42,0.370329931658982,0.0849849005049527,0.28534503115403,247.239834014009,"CHH","Os01g0900800","promoter","basic helix-loop-helix protein 109","Helix-loop-helix DNA-binding domain containing protein && - && -"]
[1,39226784,39226850,67,17,0.311167992628069,0.180303250404806,0.130864742223263,76.4810714326537,"CHH","1:39226522:39228523","CGI_shore"]
[1,39226784,39226850,67,17,0.311167992628069,0.180303250404806,0.130864742223263,76.4810714326537,"CHH","Os01g0901000","promoter","plant U-box-containing protein 28, U-box protein 28","Similar to Arm repeat-containing protein && sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1 && PF04564:U-box domain"]
[1,39352740,39352875,136,24,0.203257912168048,0.0055727227340181,0.19768518943403,187.043181874093,"CHH","1:39351186:39353186","CGI_shore"]
[1,39381434,39381626,193,52,0.0821420636437621,0.0285178135296469,0.0536242501141152,243.370703787454,"CHH","Os01g0904500","promoter","Os01g0904500","Conserved hypothetical protein && sp|Q8VYF9|SRGT1_ARATH Peptidyl serine alpha-galactosyltransferase OS=Arabidopsis thaliana OX=3702 GN=SERGT1 PE=2 SV=1 && -"]
[1,39424516,39424572,57,12,0.298024821242352,0.124245673329989,0.173779147912363,93.780984985238,"CHH","1:39422910:39424910","CGI_shore"]
[1,39424516,39424572,57,12,0.298024821242352,0.124245673329989,0.173779147912363,93.780984985238,"CHH","1:39423333:39425333","CGI_shore"]
[1,39424516,39424572,57,12,0.298024821242352,0.124245673329989,0.173779147912363,93.780984985238,"CHH","1:39423998:39425998","CGI_shore"]
[1,39450826,39450900,75,21,0.286358006182187,0.180201510589066,0.106156495593121,96.4826968354016,"CHH","Os01g0906200","intron","Os01g0906200","Similar to heat-intolerant 1 && sp|Q0WQF4|VP53A_ARATH Vacuolar protein sorting-associated protein 53 A OS=Arabidopsis thaliana OX=3702 GN=VPS53 PE=1 SV=1 && -"]
[1,39621966,39622147,182,71,0.199578971040912,0.0884681322290455,0.111110838811867,388.060255496381,"CHH","Os01g0909500","intron","Os01g0909500","Hypothetical conserved gene && sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 && -"]
[1,39622338,39622530,193,53,0.124315544612411,0.0408277400753255,0.0834878045370857,268.186744759841,"CHH","Os01g0909500","intron","Os01g0909500","Hypothetical conserved gene && sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 && -"]
[1,39625599,39625752,154,41,0.258217189380526,0.114189245664335,0.144027943716191,213.75231222196,"CHH","1:39624661:39626661","CGI_shore"]
[1,39626458,39626526,69,23,0.210431811982512,0.108434303855548,0.101997508126965,103.234077832304,"CHH","1:39624661:39626661","CGI_shore"]
[1,39626458,39626526,69,23,0.210431811982512,0.108434303855548,0.101997508126965,103.234077832304,"CHH","1:39626268:39628268","CGI_shore"]
[1,39626578,39626811,234,90,0.241323217078217,0.118243869294795,0.123079347783422,456.373321960216,"CHH","1:39624661:39626661","CGI_shore"]
[1,39626578,39626811,234,90,0.241323217078217,0.118243869294795,0.123079347783422,456.373321960216,"CHH","1:39626268:39628268","CGI_shore"]
[1,39626578,39626811,234,90,0.241323217078217,0.118243869294795,0.123079347783422,456.373321960216,"CHH","1:39626662:39626926","CGI"]
[1,39627933,39628115,183,56,0.282885314486935,0.15291202877626,0.129973285710675,257.781717992116,"CHH","1:39626268:39628268","CGI_shore"]
[1,39627933,39628115,183,56,0.282885314486935,0.15291202877626,0.129973285710675,257.781717992116,"CHH","1:39626926:39628927","CGI_shore"]
[1,39630474,39630761,288,113,0.196109760741828,0.0822820596287659,0.113827701113062,624.433482329716,"CHH","1:39628632:39630633","CGI_shore"]
[1,39630474,39630761,288,113,0.196109760741828,0.0822820596287659,0.113827701113062,624.433482329716,"CHH","1:39628964:39630964","CGI_shore"]
[1,39630474,39630761,288,113,0.196109760741828,0.0822820596287659,0.113827701113062,624.433482329716,"CHH","1:39630226:39632226","CGI_shore"]
[1,39631400,39631611,212,71,0.169665926497641,0.0750252214594615,0.0946407050381797,339.105510679871,"CHH","1:39630226:39632226","CGI_shore"]
[1,39631400,39631611,212,71,0.169665926497641,0.0750252214594615,0.0946407050381797,339.105510679871,"CHH","1:39630876:39632876","CGI_shore"]
[1,39631400,39631611,212,71,0.169665926497641,0.0750252214594615,0.0946407050381797,339.105510679871,"CHH","1:39631175:39633176","CGI_shore"]
[1,39635899,39635977,79,26,0.281609816361038,0.151861015495512,0.129748800865527,126.22256360135,"CHH","1:39634813:39636813","CGI_shore"]
[1,39635899,39635977,79,26,0.281609816361038,0.151861015495512,0.129748800865527,126.22256360135,"CHH","1:39635399:39637400","CGI_shore"]
[1,39645795,39645876,82,15,0.149906479795274,0.0434803935695423,0.106426086225732,76.4632835321322,"CHH","1:39645011:39647012","CGI_shore"]
[1,39654930,39655006,77,18,0.502908769436436,0.342255194337294,0.160653575099143,81.2565119090509,"CHH","1:39653317:39655318","CGI_shore"]
[1,39654930,39655006,77,18,0.502908769436436,0.342255194337294,0.160653575099143,81.2565119090509,"CHH","1:39654451:39656452","CGI_shore"]
[1,39654930,39655006,77,18,0.502908769436436,0.342255194337294,0.160653575099143,81.2565119090509,"CHH","Os01g0910200","exon","Os01g0910200","Hypothetical protein && - && -"]
[1,39654930,39655006,77,18,0.502908769436436,0.342255194337294,0.160653575099143,81.2565119090509,"CHH","Os01g0910200","utr3","Os01g0910200","Hypothetical protein && - && -"]
[1,39832534,39832705,172,48,0.137913732327525,0.0404670384303265,0.0974466938971985,227.655954607826,"CHH","1:39831012:39833012","CGI_shore"]
[1,39832534,39832705,172,48,0.137913732327525,0.0404670384303265,0.0974466938971985,227.655954607826,"CHH","Os01g0914000","promoter","Os01g0914000","Conserved hypothetical protein && - && -"]
[1,39951867,39951980,114,15,0.117258581858922,0.0358173952868169,0.0814411865721048,79.7482004800586,"CHH","Os01g0916350","exon","Os01g0916350","Hypothetical gene && sp|O23264|SEBP1_ARATH Selenium-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=SBP1 PE=1 SV=1 && -"]
[1,39951867,39951980,114,15,0.117258581858922,0.0358173952868169,0.0814411865721048,79.7482004800586,"CHH","Os01g0916350","utr5","Os01g0916350","Hypothetical gene && sp|O23264|SEBP1_ARATH Selenium-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=SBP1 PE=1 SV=1 && -"]
[1,39951867,39951980,114,15,0.117258581858922,0.0358173952868169,0.0814411865721048,79.7482004800586,"CHH","1:39951723:39953723","CGI_shore"]
[1,39988575,39988677,103,29,0.116241508117454,0.0212651592442045,0.0949763488732493,129.775052267942,"CHH","1:39987644:39989645","CGI_shore"]
[1,40121629,40121765,137,25,0.106137528110042,0.0190304226019591,0.0871071055080824,112.111879468053,"CHH","1:40119963:40121963","CGI_shore"]
[1,40260067,40260262,196,65,0.244925530743168,0.0780408760031927,0.166884654739975,339.854032783612,"CHH","Os01g0921800","promoter","F-box protein 52","Tetratricopeptide-like helical domain containing protein && sp|Q9FYF9|FB76_ARATH F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 && PF01753:MYND finger"]
[1,40260067,40260262,196,65,0.244925530743168,0.0780408760031927,0.166884654739975,339.854032783612,"CHH","1:40258719:40260720","CGI_shore"]
[1,40260067,40260262,196,65,0.244925530743168,0.0780408760031927,0.166884654739975,339.854032783612,"CHH","1:40258744:40260744","CGI_shore"]
[1,40343406,40343582,177,36,0.209710858102185,0.0817735586016785,0.127937299500507,171.53200621582,"CHH","1:40341577:40343578","CGI_shore"]
[1,40343406,40343582,177,36,0.209710858102185,0.0817735586016785,0.127937299500507,171.53200621582,"CHH","1:40342207:40344207","CGI_shore"]
[1,40343406,40343582,177,36,0.209710858102185,0.0817735586016785,0.127937299500507,171.53200621582,"CHH","Os01g0922800","promoter","MADS BOX GENE 51","MADS-box transcription factor, Short-day flowering promote && sp|Q9XJ61|MAD51_ORYSJ MADS-box transcription factor 51 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS51 PE=2 SV=1 && PF00319:SRF-type transcription factor (DNA-binding and dimerisation domain)"]
[1,40577761,40577993,233,44,0.287091234013871,0.0748633235608656,0.212227910453005,291.681969070797,"CHH","1:40576067:40578067","CGI_shore"]
[1,40702822,40702934,113,32,0.327318782064018,0.132405952104861,0.194912829959157,157.228182558311,"CHH","1:40702651:40704652","CGI_shore"]
[1,40731256,40731358,103,17,0.152627812275827,0.0156459701647267,0.1369818421111,93.662320531347,"CHH","1:40730119:40732119","CGI_shore"]
[1,40731256,40731358,103,17,0.152627812275827,0.0156459701647267,0.1369818421111,93.662320531347,"CHH","Os01g0928100","promoter","Os01g0928100","Similar to expressed protein && sp|Q8RWD5|SCD2_ARATH Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana OX=3702 GN=SCD2 PE=1 SV=1 && -"]
[1,40731256,40731358,103,17,0.152627812275827,0.0156459701647267,0.1369818421111,93.662320531347,"CHH","1:40730547:40732548","CGI_shore"]
[1,40765245,40765479,235,44,0.283993252987321,0.113442430975946,0.170550822011375,212.568112652509,"CHH","Os01g0928600","promoter","Os01g0928600","Serine palmitoyltransferase && sp|Q8RYL1|LCB2B_ORYSJ Long chain base biosynthesis protein 2b OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0928600 PE=2 SV=1 && PF00155:Aminotransferase class I and II"]
[1,40765245,40765479,235,44,0.283993252987321,0.113442430975946,0.170550822011375,212.568112652509,"CHH","1:40764198:40766199","CGI_shore"]
[1,40872180,40872413,234,46,0.513436822579991,0.222596107812799,0.290840714767192,325.627542304625,"CHH","1:40871868:40873869","CGI_shore"]
[1,40872180,40872413,234,46,0.513436822579991,0.222596107812799,0.290840714767192,325.627542304625,"CHH","Os01g0931400","promoter","Regulator of XA21-1","Similar to thiamin pyrophosphokinase 1 && sp|Q5JK24|TPK1_ORYSJ Thiamine pyrophosphokinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPK1 PE=2 SV=1 && -"]
[1,41079389,41079463,75,26,0.142027605909056,0.0627282341470013,0.0792993717620548,133.7565344507,"CHH","1:41077624:41079624","CGI_shore"]
[1,41079389,41079463,75,26,0.142027605909056,0.0627282341470013,0.0792993717620548,133.7565344507,"CHH","1:41079245:41081245","CGI_shore"]
[1,41192763,41192884,122,25,0.199054815462729,0.0637824338443904,0.135272381618339,110.589945136327,"CHH","Os01g0938200","promoter","Os01g0938200","Similar to RNA-binding protein BRUNOL5 (Fragment) && sp|Q8LFS6|BRN1L_ARATH RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[1,41192763,41192884,122,25,0.199054815462729,0.0637824338443904,0.135272381618339,110.589945136327,"CHH","1:41191392:41193392","CGI_shore"]
[1,41239311,41239536,226,30,0.250426398142651,0.0321590926552758,0.218267305487375,169.510057212259,"CHH","Os01g0939400","promoter","Os01g0939400","Conserved hypothetical protein && - && -"]
[1,41239311,41239536,226,30,0.250426398142651,0.0321590926552758,0.218267305487375,169.510057212259,"CHH","1:41238802:41240803","CGI_shore"]
[1,41239311,41239536,226,30,0.250426398142651,0.0321590926552758,0.218267305487375,169.510057212259,"CHH","1:41238993:41240993","CGI_shore"]
[1,41306119,41306193,75,13,0.419868679003882,0.218850039956423,0.20101863904746,56.7836424582222,"CG","1:41305238:41307239","CGI_shore"]
[1,41306119,41306193,75,13,0.419868679003882,0.218850039956423,0.20101863904746,56.7836424582222,"CG","Os01g0940100","utr3","HEXOKINASE-3","Similar to Hexokinase && sp|Q2KNB4|HXK3_ORYSJ Hexokinase-3 OS=Oryza sativa subsp. japonica OX=39947 GN=HXK3 PE=2 SV=1 && -"]
[1,41306119,41306193,75,13,0.419868679003882,0.218850039956423,0.20101863904746,56.7836424582222,"CG","Os01g0940100","exon","HEXOKINASE-3","Similar to Hexokinase && sp|Q2KNB4|HXK3_ORYSJ Hexokinase-3 OS=Oryza sativa subsp. japonica OX=39947 GN=HXK3 PE=2 SV=1 && -"]
[1,41306119,41306193,75,13,0.419868679003882,0.218850039956423,0.20101863904746,56.7836424582222,"CG","1:41305854:41306175","CGI"]
[1,41306119,41306193,75,13,0.419868679003882,0.218850039956423,0.20101863904746,56.7836424582222,"CG","1:41306175:41308176","CGI_shore"]
[1,41308034,41308152,119,30,0.271319112420608,0.136270475921513,0.135048636499095,181.505187173878,"CHH","1:41306175:41308176","CGI_shore"]
[1,41308034,41308152,119,30,0.271319112420608,0.136270475921513,0.135048636499095,181.505187173878,"CHH","Os01g0940100","intron","HEXOKINASE-3","Similar to Hexokinase && sp|Q2KNB4|HXK3_ORYSJ Hexokinase-3 OS=Oryza sativa subsp. japonica OX=39947 GN=HXK3 PE=2 SV=1 && -"]
[1,41308034,41308152,119,30,0.271319112420608,0.136270475921513,0.135048636499095,181.505187173878,"CHH","Os01g0940100","promoter","HEXOKINASE-3","Similar to Hexokinase && sp|Q2KNB4|HXK3_ORYSJ Hexokinase-3 OS=Oryza sativa subsp. japonica OX=39947 GN=HXK3 PE=2 SV=1 && -"]
[1,41308034,41308152,119,30,0.271319112420608,0.136270475921513,0.135048636499095,181.505187173878,"CHH","1:41307320:41309320","CGI_shore"]
[1,41368550,41368766,217,64,0.150179745194322,0.02538505043203,0.124794694762292,333.470510577121,"CHH","1:41332855:41424318","CGI"]
[1,41402773,41402848,76,14,0.626856832513332,0.248665990106124,0.378190842407208,64.2017559491127,"CG","1:41332855:41424318","CGI"]
[1,41531827,41531887,61,17,0.128656421187322,0.0709162155107804,0.0577402056765417,72.6126405147236,"CHH","1:41531535:41533535","CGI_shore"]
[1,41606570,41606842,273,107,0.0863089572058164,0.0318376533033323,0.054471303902484,496.438193820239,"CHH","Os01g0946850","intron","Os01g0946850","Conserved hypothetical protein && - && -"]
[1,41642475,41642541,67,19,0.454186565329162,0.273126463906434,0.181060101422728,93.0202883691555,"CHH","1:41642450:41644451","CGI_shore"]
[1,41642475,41642541,67,19,0.454186565329162,0.273126463906434,0.181060101422728,93.0202883691555,"CHH","1:41642514:41644514","CGI_shore"]
[1,41645094,41645272,179,54,0.186662959324816,0.0719064478232929,0.114756511501523,263.501698008432,"CHH","1:41644515:41645250","CGI"]
[1,41645094,41645272,179,54,0.186662959324816,0.0719064478232929,0.114756511501523,263.501698008432,"CHH","1:41645250:41647251","CGI_shore"]
[1,41664632,41664699,68,21,0.135345019921438,0.0584394430585389,0.0769055768628988,85.3108987516774,"CHH","1:41664525:41666526","CGI_shore"]
[1,41664632,41664699,68,21,0.135345019921438,0.0584394430585389,0.0769055768628988,85.3108987516774,"CHH","1:41663423:41665423","CGI_shore"]
[1,41664632,41664699,68,21,0.135345019921438,0.0584394430585389,0.0769055768628988,85.3108987516774,"CHH","1:41664200:41666200","CGI_shore"]
[1,42048170,42048411,242,51,0.243485555390897,0.123400388994859,0.120085166396038,252.324994266216,"CHH","1:42046504:42048504","CGI_shore"]
[1,42048170,42048411,242,51,0.243485555390897,0.123400388994859,0.120085166396038,252.324994266216,"CHH","1:42048011:42050011","CGI_shore"]
[1,42275145,42275334,190,40,0.380330335010953,0.242905699506161,0.137424635504792,184.868289385734,"CHH","Os01g0959000","promoter","Os01g0959000","Nucleotide-binding, alpha-beta plait domain containing protein && sp|Q9SEE9|SR45_ARATH Serine/arginine-rich splicing factor SR45 OS=Arabidopsis thaliana OX=3702 GN=SR45 PE=1 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[1,42275145,42275334,190,40,0.380330335010953,0.242905699506161,0.137424635504792,184.868289385734,"CHH","1:42273554:42275554","CGI_shore"]
[1,42275145,42275334,190,40,0.380330335010953,0.242905699506161,0.137424635504792,184.868289385734,"CHH","Os01g0958950","promoter","Os01g0958950","Hypothetical protein && sp|Q9ZRV4|MLH1_ARATH DNA mismatch repair protein MLH1 OS=Arabidopsis thaliana OX=3702 GN=MLH1 PE=2 SV=1 && -"]
[1,42372759,42372909,151,29,0.266976348213885,0.0566184364795647,0.210357911734321,155.172273155702,"CG","1:42372520:42373102","CGI"]
[1,42561817,42561942,126,44,0.0442140854434569,0.00715089564228007,0.0370631898011768,196.070142404243,"CHH","1:42558847:42563435","CGI"]
[1,42561817,42561942,126,44,0.0442140854434569,0.00715089564228007,0.0370631898011768,196.070142404243,"CHH","Os01g0965400","promoter","yellow-green leaf 8","Chloroplast-targeted UMP kinase, Regulation of leaf colou && sp|Q2JS42|PYRH_SYNJA Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=pyrH PE=3 SV=1 && PF00696:Amino acid kinase family"]
[1,42738336,42738478,143,23,0.198108881688732,0.0861264501862262,0.111982431502506,119.537463572816,"CHH","1:42737914:42739915","CGI_shore"]
[1,42738336,42738478,143,23,0.198108881688732,0.0861264501862262,0.111982431502506,119.537463572816,"CHH","Os01g0969000","promoter","Os01g0969000","Similar to Chloroplast outer envelope 24 kD protein && - && -"]
[1,42941015,42941197,183,27,0.289852637648331,0.0745673204456935,0.215285317202638,135.604071234304,"CHH","1:42936844:42941169","CGI"]
[1,42941015,42941197,183,27,0.289852637648331,0.0745673204456935,0.215285317202638,135.604071234304,"CHH","1:42941169:42943170","CGI_shore"]
[1,43054943,43055068,126,19,0.0745697838966725,0.00476115119698029,0.0698086326996922,83.5493835582446,"CHH","Os01g0974300","promoter","Os01g0974300","Conserved hypothetical protein && - && -"]
[1,43061947,43062211,265,48,0.228990663219128,0.0839032913285076,0.14508737189062,225.221611955787,"CHH","Os01g0974400","promoter","RING finger protein OsRFPHC-7, RING-HC protein 7","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS31 PE=2 SV=1 && PF12796:Ankyrin repeats (3 copies)"]
[1,43061947,43062211,265,48,0.228990663219128,0.0839032913285076,0.14508737189062,225.221611955787,"CHH","1:43061776:43063776","CGI_shore"]
[1,43109007,43109102,96,29,0.193670252173224,0.0938001560725078,0.0998700961007163,129.663808287388,"CHH","1:43107189:43109190","CGI_shore"]
[1,43109007,43109102,96,29,0.193670252173224,0.0938001560725078,0.0998700961007163,129.663808287388,"CHH","1:43108409:43110410","CGI_shore"]
[1,43136678,43136768,91,34,0.16994450989235,0.0817126248036385,0.0882318850887115,150.380672057648,"CHH","1:43135450:43137451","CGI_shore"]
[1,43136678,43136768,91,34,0.16994450989235,0.0817126248036385,0.0882318850887115,150.380672057648,"CHH","Os01g0976200","exon","Os01g0976200","11-S plant seed storage protein family protein && sp|P07730|GLUA2_ORYSJ Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 && PF00190:Cupin"]
[1,43136678,43136768,91,34,0.16994450989235,0.0817126248036385,0.0882318850887115,150.380672057648,"CHH","1:43136527:43138052","CGI"]
[1,43220810,43220979,170,51,0.0829990262598185,0.0218414325954652,0.0611575936643533,240.00667335439,"CHH","Os01g0977901","utr3","Os01g0977901","Similar to MDR-like ABC transporter && sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCB11 PE=2 SV=1 && -"]
[1,43220810,43220979,170,51,0.0829990262598185,0.0218414325954652,0.0611575936643533,240.00667335439,"CHH","Os01g0977901","exon","Os01g0977901","Similar to MDR-like ABC transporter && sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCB11 PE=2 SV=1 && -"]
[1,43220810,43220979,170,51,0.0829990262598185,0.0218414325954652,0.0611575936643533,240.00667335439,"CHH","Os01g0977901","intron","Os01g0977901","Similar to MDR-like ABC transporter && sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCB11 PE=2 SV=1 && -"]
[1,43220810,43220979,170,51,0.0829990262598185,0.0218414325954652,0.0611575936643533,240.00667335439,"CHH","1:43219381:43221382","CGI_shore"]
[1,43220810,43220979,170,51,0.0829990262598185,0.0218414325954652,0.0611575936643533,240.00667335439,"CHH","1:43220224:43221677","CGI"]
[10,45431,45574,144,54,0.295873330518083,0.128409599623366,0.167463730894717,281.53727892454,"CHH","10:44857:45446","CGI"]
[10,45431,45574,144,54,0.295873330518083,0.128409599623366,0.167463730894717,281.53727892454,"CHH","Os10g0100200","exon","Os10g0100200","Hypothetical protein && - && -"]
[10,45431,45574,144,54,0.295873330518083,0.128409599623366,0.167463730894717,281.53727892454,"CHH","Os10g0100200","utr3","Os10g0100200","Hypothetical protein && - && -"]
[10,45431,45574,144,54,0.295873330518083,0.128409599623366,0.167463730894717,281.53727892454,"CHH","10:45446:47447","CGI_shore"]
[10,127731,127910,180,54,0.117039387138675,0.0218552744280407,0.0951841127106342,328.080772926427,"CHH","10:126465:128466","CGI_shore"]
[10,127731,127910,180,54,0.117039387138675,0.0218552744280407,0.0951841127106342,328.080772926427,"CHH","10:127563:129563","CGI_shore"]
[10,159054,159319,266,86,0.415576916070517,0.235864636396584,0.179712279673933,525.788367277048,"CHH","10:157867:159867","CGI_shore"]
[10,220684,220765,82,30,0.256675867573106,0.0785158483337815,0.178160019239324,165.838033966661,"CHH","10:219908:221908","CGI_shore"]
[10,220684,220765,82,30,0.256675867573106,0.0785158483337815,0.178160019239324,165.838033966661,"CHH","10:220671:222672","CGI_shore"]
[10,221837,222017,181,56,0.231507132417135,0.0697012580641246,0.16180587435301,270.09592013634,"CHH","10:219908:221908","CGI_shore"]
[10,221837,222017,181,56,0.231507132417135,0.0697012580641246,0.16180587435301,270.09592013634,"CHH","10:220671:222672","CGI_shore"]
[10,221837,222017,181,56,0.231507132417135,0.0697012580641246,0.16180587435301,270.09592013634,"CHH","10:221909:222115","CGI"]
[10,226917,227010,94,9,0.666063171257643,0.360800650003056,0.305262521254587,54.2504540976738,"CG","Os10g0102900","promoter","Os10g0102900","Similar to OSIGBa0140C02.4 protein && - && PF09741:Uncharacterized conserved protein (DUF2045)"]
[10,226917,227010,94,9,0.666063171257643,0.360800650003056,0.305262521254587,54.2504540976738,"CG","10:226818:227431","CGI"]
[10,292253,292324,72,15,0.119862323425525,0.0272274984044758,0.0926348250210489,91.1729291886456,"CHH","10:291602:293603","CGI_shore"]
[10,318854,318945,92,24,0.202191052960416,0.0849809759768148,0.117210076983601,137.202918394761,"CHH","10:317621:319622","CGI_shore"]
[10,388935,389010,76,26,0.0790964960908508,0.0400081758553087,0.0390883202355421,136.736759691636,"CHH","10:386989:388990","CGI_shore"]
[10,388935,389010,76,26,0.0790964960908508,0.0400081758553087,0.0390883202355421,136.736759691636,"CHH","10:387457:389457","CGI_shore"]
[10,411195,411313,119,24,0.102763031941798,0.0186158685117229,0.0841471634300752,146.033876861012,"CHH","Os10g0105400","intron","Os10g0105400","Hypothetical conserved gene && - && -"]
[10,724110,724295,186,44,0.115520229329436,0.0164228062250837,0.0990974231043518,270.716692460913,"CHH","10:723354:725354","CGI_shore"]
[10,830707,830800,94,28,0.260953132162931,0.175132881210056,0.0858202509528749,146.166264260517,"CHH","10:828922:830922","CGI_shore"]
[10,831091,831272,182,32,0.170092647412319,0.0880182500956499,0.0820743973166693,146.050339264926,"CHH","10:830923:831324","CGI"]
[10,835482,835677,196,47,0.381231255965335,0.05582770602871,0.325403549936625,284.165934905099,"CHH","Os10g0112500","promoter","Os10g0112500","Similar to POT family protein, expressed && sp|P46032|PTR2_ARATH Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1 && PF00854:POT family"]
[10,835482,835677,196,47,0.381231255965335,0.05582770602871,0.325403549936625,284.165934905099,"CHH","10:834755:836755","CGI_shore"]
[10,854094,854427,334,84,0.274485020170787,0.148144466272192,0.126340553898595,385.038488307223,"CHH","10:853868:855868","CGI_shore"]
[10,855887,856980,1094,23,0.131510177333882,0.0310912240560934,0.100418953277789,102.725339916854,"CHH","10:855869:856132","CGI"]
[10,855887,856980,1094,23,0.131510177333882,0.0310912240560934,0.100418953277789,102.725339916854,"CHH","10:856132:858133","CGI_shore"]
[10,855887,856980,1094,23,0.131510177333882,0.0310912240560934,0.100418953277789,102.725339916854,"CHH","10:856360:858360","CGI_shore"]
[10,922703,922924,222,72,0.105794277567078,0.0331353110720913,0.0726589664949865,378.892660299002,"CHH","10:920205:931698","CGI"]
[10,922703,922924,222,72,0.105794277567078,0.0331353110720913,0.0726589664949865,378.892660299002,"CHH","Os10g0114300","promoter","Os10g0114300","Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247) && sp|Q10PE7|DMAS1_ORYSJ Deoxymugineic acid synthase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DMAS1 PE=1 SV=1 && PF00248:Aldo/keto reductase family"]
[10,924799,925046,248,50,0.389673378680025,0.146544658634222,0.243128720045804,309.379605697584,"CHH","10:920205:931698","CGI"]
[10,924799,925046,248,50,0.389673378680025,0.146544658634222,0.243128720045804,309.379605697584,"CHH","Os10g0114300","intron","Os10g0114300","Similar to NADPH-dependent codeinone reductase (EC 1.1.1.247) && sp|Q10PE7|DMAS1_ORYSJ Deoxymugineic acid synthase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DMAS1 PE=1 SV=1 && PF00248:Aldo/keto reductase family"]
[10,984569,984637,69,11,0.315947925899378,0.0322241928544257,0.283723733044953,68.9158057559413,"CHH","10:982950:984950","CGI_shore"]
[10,993356,993410,55,16,0.245631634072235,0.13472135116092,0.110910282911315,85.9647437657817,"CHH","10:993171:995172","CGI_shore"]
[10,993614,993703,90,31,0.166925605525074,0.0545206568832812,0.112404948641792,195.876133537088,"CHH","10:993171:995172","CGI_shore"]
[10,1052964,1053164,201,40,0.278656911928231,0.106068593090004,0.172588318838227,243.403389149969,"CHH","10:1049829:1060023","CGI"]
[10,1052964,1053164,201,40,0.278656911928231,0.106068593090004,0.172588318838227,243.403389149969,"CHH","Os10g0116200","intron","Os10g0116200","Conserved hypothetical protein && - && -"]
[10,1052964,1053164,201,40,0.278656911928231,0.106068593090004,0.172588318838227,243.403389149969,"CHH","Os10g0116300","promoter","Os10g0116300","EF-HAND 2 domain containing protein && - && -"]
[10,1062384,1062484,101,47,0.0875531334513261,0.0319335824285304,0.0556195510227957,238.957390218883,"CHH","10:1061461:1063462","CGI_shore"]
[10,1062384,1062484,101,47,0.0875531334513261,0.0319335824285304,0.0556195510227957,238.957390218883,"CHH","10:1062266:1062522","CGI"]
[10,1065132,1065337,206,49,0.247291853234464,0.119045395130615,0.12824645810385,264.133739123757,"CHH","Os10g0116650","promoter","Os10g0116650","Hypothetical protein && sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 && -"]
[10,1065132,1065337,206,49,0.247291853234464,0.119045395130615,0.12824645810385,264.133739123757,"CHH","10:1064812:1066301","CGI"]
[10,1068585,1068722,138,34,0.444182331491709,0.290769234844062,0.153413096647647,181.235311353923,"CHH","10:1067334:1069334","CGI_shore"]
[10,1068585,1068722,138,34,0.444182331491709,0.290769234844062,0.153413096647647,181.235311353923,"CHH","Os10g0116600","promoter","Os10g0116600","Serine/threonine protein kinase domain containing protein && sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 && PF07714:Protein tyrosine kinase"]
[10,1068585,1068722,138,34,0.444182331491709,0.290769234844062,0.153413096647647,181.235311353923,"CHH","Os10g0116650","intron","Os10g0116650","Hypothetical protein && sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 && -"]
[10,1077000,1077199,200,82,0.193925005462553,0.102954769063897,0.0909702363986567,445.835208621725,"CHH","10:1076987:1078988","CGI_shore"]
[10,1081539,1081657,119,47,0.292001941447324,0.16074312209326,0.131258819354065,249.630877573144,"CHH","Os10g0116800","promoter","PURPLE ACID PHOSPHATASE 3B","Similar to Purple acid phosphatase && sp|Q8H129|PPA3_ARATH Purple acid phosphatase 3 OS=Arabidopsis thaliana OX=3702 GN=PAP3 PE=2 SV=1 && PF00149:Calcineurin-like phosphoesterase"]
[10,1081539,1081657,119,47,0.292001941447324,0.16074312209326,0.131258819354065,249.630877573144,"CHH","10:1080966:1082966","CGI_shore"]
[10,1103747,1103869,123,29,0.1622209073792,0.0098022517507108,0.152418655628489,228.319135757803,"CHH","10:1103540:1105541","CGI_shore"]
[10,1113924,1114004,81,33,0.123795523192108,0.0304966130349689,0.0932989101571393,185.361562932058,"CHH","10:1112264:1114265","CGI_shore"]
[10,1113924,1114004,81,33,0.123795523192108,0.0304966130349689,0.0932989101571393,185.361562932058,"CHH","10:1112407:1114407","CGI_shore"]
[10,1113924,1114004,81,33,0.123795523192108,0.0304966130349689,0.0932989101571393,185.361562932058,"CHH","Os10g0117400","promoter","Os10g0117400","Hypothetical conserved gene && - && -"]
[10,1184095,1184148,54,13,0.862179929518581,0.678753148225483,0.183426781293098,57.0861845507864,"CG","10:1183019:1185020","CGI_shore"]
[10,1184095,1184148,54,13,0.862179929518581,0.678753148225483,0.183426781293098,57.0861845507864,"CG","10:1183617:1184177","CGI"]
[10,1205705,1205985,281,83,0.139233215854765,0.0637547576606728,0.0754784581940924,382.321400570499,"CHH","10:1205509:1207509","CGI_shore"]
[10,1266617,1266723,107,37,0.124316703352568,0.031164785391613,0.0931519179609552,222.921224325451,"CHH","10:1266120:1268120","CGI_shore"]
[10,1278002,1278088,87,25,0.0631387827449827,0.0141580646434591,0.0489807181015236,112.725866324811,"CHH","10:1276023:1278024","CGI_shore"]
[10,1278002,1278088,87,25,0.0631387827449827,0.0141580646434591,0.0489807181015236,112.725866324811,"CHH","10:1277106:1279107","CGI_shore"]
[10,1278002,1278088,87,25,0.0631387827449827,0.0141580646434591,0.0489807181015236,112.725866324811,"CHH","10:1277612:1279613","CGI_shore"]
[10,1300148,1300336,189,54,0.215743556928041,0.094780496753963,0.120963060174078,290.118182705072,"CHH","10:1298728:1300729","CGI_shore"]
[10,1300148,1300336,189,54,0.215743556928041,0.094780496753963,0.120963060174078,290.118182705072,"CHH","10:1298774:1300774","CGI_shore"]
[10,1354799,1354992,194,44,0.201017661352752,0.0802494254626324,0.12076823589012,218.999701574178,"CHH","10:1352632:1356524","CGI"]
[10,1354799,1354992,194,44,0.201017661352752,0.0802494254626324,0.12076823589012,218.999701574178,"CHH","Os10g0121300","promoter","Os10g0121300","Hypothetical conserved gene && sp|Q93ZT5|EDL3_ARATH EID1-like F-box protein 3 OS=Arabidopsis thaliana OX=3702 GN=EDL3 PE=2 SV=1 && -"]
[10,1354799,1354992,194,44,0.201017661352752,0.0802494254626324,0.12076823589012,218.999701574178,"CHH","10:1354919:1356919","CGI_shore"]
[10,1366248,1366308,61,16,0.0810452909173322,0.0106887886794875,0.0703565022378446,71.793744591622,"CHH","10:1364798:1366799","CGI_shore"]
[10,1366248,1366308,61,16,0.0810452909173322,0.0106887886794875,0.0703565022378446,71.793744591622,"CHH","10:1366059:1368059","CGI_shore"]
[10,1466403,1466527,125,22,0.370493478768902,0.168987491900215,0.201505986868687,133.628313361158,"CHH","10:1464997:1466998","CGI_shore"]
[10,1519220,1519569,350,20,0.218813853162351,0.0442726485317637,0.174541204630588,100.480263671638,"CHH","10:1517969:1519547","CGI"]
[10,1519220,1519569,350,20,0.218813853162351,0.0442726485317637,0.174541204630588,100.480263671638,"CHH","10:1519547:1521548","CGI_shore"]
[10,1565553,1565751,199,60,0.184329914093957,0.0568733701798718,0.127456543914086,329.11459837292,"CHH","Os10g0124700","promoter","F-box protein 508","Cyclin-like F-box domain containing protein && sp|Q7X7A4|MOF_ORYSJ MEIOTIC F-BOX protein MOF OS=Oryza sativa subsp. japonica OX=39947 GN=MOF PE=1 SV=2 && -"]
[10,1565553,1565751,199,60,0.184329914093957,0.0568733701798718,0.127456543914086,329.11459837292,"CHH","10:1565406:1567407","CGI_shore"]
[10,1573883,1574194,312,103,0.344623328272979,0.0392836251802485,0.30533970309273,1177.24910451586,"CHH","10:1572729:1574365","CGI"]
[10,1575081,1575154,74,12,0.335001825609887,0.0993599195101593,0.235641906099728,70.6021844988925,"CHH","10:1574365:1576366","CGI_shore"]
[10,1591302,1591357,56,22,0.195706834720545,0.0648321777661376,0.130874656954407,106.413289691834,"CHH","10:1590083:1595911","CGI"]
[10,1591302,1591357,56,22,0.195706834720545,0.0648321777661376,0.130874656954407,106.413289691834,"CHH","Os10g0124900","utr5","Os10g0124900","Conserved hypothetical protein && - && -"]
[10,1591302,1591357,56,22,0.195706834720545,0.0648321777661376,0.130874656954407,106.413289691834,"CHH","Os10g0124900","exon","Os10g0124900","Conserved hypothetical protein && - && -"]
[10,1591656,1591737,82,31,0.21625730719956,0.065636400273263,0.150620906926297,152.724600350599,"CHH","10:1590083:1595911","CGI"]
[10,1591656,1591737,82,31,0.21625730719956,0.065636400273263,0.150620906926297,152.724600350599,"CHH","Os10g0124900","exon","Os10g0124900","Conserved hypothetical protein && - && -"]
[10,1619765,1619823,59,18,0.182604243716875,0.105725106750426,0.0768791369664494,87.0667210276819,"CHH","10:1618716:1620716","CGI_shore"]
[10,1679850,1680069,220,59,0.203104005990798,0.076164267348531,0.126939738642267,305.426713573029,"CHH","10:1678465:1680466","CGI_shore"]
[10,1680149,1680226,78,37,0.300806235055285,0.170441531731572,0.130364703323713,181.126166040165,"CHH","10:1678465:1680466","CGI_shore"]
[10,1778732,1778883,152,52,0.0826890681913495,0.0212769901911324,0.0614120780002171,263.885975544046,"CHH","10:1776746:1778746","CGI_shore"]
[10,1778732,1778883,152,52,0.0826890681913495,0.0212769901911324,0.0614120780002171,263.885975544046,"CHH","10:1777616:1779617","CGI_shore"]
[10,1778732,1778883,152,52,0.0826890681913495,0.0212769901911324,0.0614120780002171,263.885975544046,"CHH","Os10g0128600","promoter","F-box protein 518","Cyclin-like F-box domain containing protein && sp|Q3E8L5|FBL85_ARATH Putative F-box/LRR-repeat protein At5g38386 OS=Arabidopsis thaliana OX=3702 GN=At5g38386 PE=4 SV=1 && PF00646:F-box domain"]
[10,1778732,1778883,152,52,0.0826890681913495,0.0212769901911324,0.0614120780002171,263.885975544046,"CHH","Os10g0128700","exon","Os10g0128700","Conserved hypothetical protein && sp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 && -"]
[10,1778732,1778883,152,52,0.0826890681913495,0.0212769901911324,0.0614120780002171,263.885975544046,"CHH","10:1778747:1779227","CGI"]
[10,1788508,1788649,142,28,0.137001493540367,0.0318947849214322,0.105106708618935,148.011209593998,"CHH","10:1786850:1788850","CGI_shore"]
[10,1788508,1788649,142,28,0.137001493540367,0.0318947849214322,0.105106708618935,148.011209593998,"CHH","Os10g0129100","promoter","F-box protein 519","Similar to cDNA clone:001-119-F04, full insert sequence && sp|O23257|FBL72_ARATH Putative F-box/LRR-repeat protein At4g13960 OS=Arabidopsis thaliana OX=3702 GN=At4g13960 PE=4 SV=1 && -"]
[10,1788508,1788649,142,28,0.137001493540367,0.0318947849214322,0.105106708618935,148.011209593998,"CHH","10:1788261:1790262","CGI_shore"]
[10,1803698,1803898,201,41,0.226441520269792,0.0645920222413856,0.161849498028407,248.396526028987,"CHH","10:1801235:1805768","CGI"]
[10,1811653,1811757,105,33,0.198815488448151,0.069604730405413,0.129210758042738,167.000116958682,"CHH","10:1810618:1812619","CGI_shore"]
[10,1811653,1811757,105,33,0.198815488448151,0.069604730405413,0.129210758042738,167.000116958682,"CHH","10:1811576:1813576","CGI_shore"]
[10,1815758,1815879,122,35,0.0706571031966601,0.0215724260319837,0.0490846771646765,147.775566083748,"CHH","10:1813958:1815959","CGI_shore"]
[10,1815758,1815879,122,35,0.0706571031966601,0.0215724260319837,0.0490846771646765,147.775566083748,"CHH","10:1814482:1816595","CGI"]
[10,1815758,1815879,122,35,0.0706571031966601,0.0215724260319837,0.0490846771646765,147.775566083748,"CHH","10:1815759:1817759","CGI_shore"]
[10,1816706,1816787,82,30,0.0848389944998117,0.0395349291310075,0.0453040653688042,151.862073701624,"CHH","10:1815759:1817759","CGI_shore"]
[10,1816706,1816787,82,30,0.0848389944998117,0.0395349291310075,0.0453040653688042,151.862073701624,"CHH","10:1816595:1818596","CGI_shore"]
[10,1828320,1828569,250,70,0.199502637327512,0.0796390172719753,0.119863620055537,434.459173930287,"CHH","10:1826686:1828687","CGI_shore"]
[10,1828320,1828569,250,70,0.199502637327512,0.0796390172719753,0.119863620055537,434.459173930287,"CHH","10:1826989:1828989","CGI_shore"]
[10,1828320,1828569,250,70,0.199502637327512,0.0796390172719753,0.119863620055537,434.459173930287,"CHH","Os10g0130066","promoter","Os10g0130066","Hypothetical protein && sp|O80888|M3K17_ARATH Mitogen-activated protein kinase kinase kinase 17 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK17 PE=1 SV=1 && PF00069:Protein kinase domain"]
[10,1828320,1828569,250,70,0.199502637327512,0.0796390172719753,0.119863620055537,434.459173930287,"CHH","10:1827919:1829920","CGI_shore"]
[10,1843776,1843903,128,27,0.255485268909163,0.129509898698971,0.125975370210191,135.682748593367,"CHH","10:1842278:1844278","CGI_shore"]
[10,1843776,1843903,128,27,0.255485268909163,0.129509898698971,0.125975370210191,135.682748593367,"CHH","10:1842882:1844883","CGI_shore"]
[10,1846283,1846461,179,60,0.184125722557657,0.0821247322902591,0.102000990267398,315.176917836356,"CHH","10:1844552:1846553","CGI_shore"]
[10,1861518,1861682,165,62,0.0953193915808152,0.0205723090377583,0.0747470825430569,329.712383712223,"CHH","Os10g0130500","utr5","Os10g0130500","Hypothetical protein && - && -"]
[10,1861518,1861682,165,62,0.0953193915808152,0.0205723090377583,0.0747470825430569,329.712383712223,"CHH","Os10g0130500","exon","Os10g0130500","Hypothetical protein && - && -"]
[10,1867979,1868138,160,49,0.102864921572039,0.0418250829139978,0.0610398386580409,233.500622123294,"CHH","10:1866479:1868479","CGI_shore"]
[10,1867979,1868138,160,49,0.102864921572039,0.0418250829139978,0.0610398386580409,233.500622123294,"CHH","10:1867775:1869775","CGI_shore"]
[10,1894781,1895104,324,91,0.359115504786704,0.202823996031249,0.156291508755456,478.00355972733,"CHH","Os10g0130800","promoter","Os10g0130800","Conserved hypothetical protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && -"]
[10,1894781,1895104,324,91,0.359115504786704,0.202823996031249,0.156291508755456,478.00355972733,"CHH","10:1893999:1895999","CGI_shore"]
[10,1895431,1895588,158,48,0.336639638255919,0.190591970958164,0.146047667297756,257.901543336441,"CHH","Os10g0130800","promoter","Os10g0130800","Conserved hypothetical protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && -"]
[10,1895431,1895588,158,48,0.336639638255919,0.190591970958164,0.146047667297756,257.901543336441,"CHH","10:1893999:1895999","CGI_shore"]
[10,1946805,1946881,77,23,0.111558191540668,0.0294842027326782,0.0820739888079901,119.143436873118,"CHH","Os10g0131750","promoter","Os10g0131750","Similar to tubulin beta-4 chain && - && -"]
[10,1953336,1953477,142,50,0.14436217641231,0.0286724385231201,0.115689737889189,247.06098879026,"CHH","Os10g0131800","intron","Os10g0131800","Similar to NBS-LRR class disease resistance protein && sp|P0DO07|PIK2_ORYSJ Disease resistance protein Pik-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-2 PE=3 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[10,1953336,1953477,142,50,0.14436217641231,0.0286724385231201,0.115689737889189,247.06098879026,"CHH","Os10g0131850","exon","Os10g0131850","Hypothetical gene && - && -"]
[10,1953336,1953477,142,50,0.14436217641231,0.0286724385231201,0.115689737889189,247.06098879026,"CHH","10:1952750:1953843","CGI"]
[10,1953336,1953477,142,50,0.14436217641231,0.0286724385231201,0.115689737889189,247.06098879026,"CHH","Os10g0131850","utr3","Os10g0131850","Hypothetical gene && - && -"]
[10,1953336,1953477,142,50,0.14436217641231,0.0286724385231201,0.115689737889189,247.06098879026,"CHH","Os10g0131850","TES","Os10g0131850","Hypothetical gene && - && -"]
[10,1977363,1977470,108,28,0.109072209786659,0.0324405401448011,0.0766316696418576,135.542739649038,"CHH","10:1974754:1978606","CGI"]
[10,1987386,1987470,85,33,0.104168771422332,0.0409336824605085,0.0632350889618237,150.223238055016,"CHH","10:1987270:1987499","CGI"]
[10,1997086,1997213,128,28,0.286327283981931,0.128124356990591,0.15820292699134,147.569691585241,"CHH","10:1996967:1998967","CGI_shore"]
[10,2000491,2000960,470,111,0.415320446770321,0.223585908720636,0.191734538049685,635.095279989869,"CHH","10:1999589:2001590","CGI_shore"]
[10,2000491,2000960,470,111,0.415320446770321,0.223585908720636,0.191734538049685,635.095279989869,"CHH","Os10g0132300","promoter","Os10g0132300","Similar to Jasmonate-induced protein && sp|Q5U9T2|LECH_HORVU Horcolin OS=Hordeum vulgare OX=4513 PE=3 SV=1 && PF01419:Jacalin-like lectin domain"]
[10,2011092,2011212,121,35,0.209327923999475,0.0491095071765605,0.160218416822915,133.561508003535,"CG","10:2009675:2011676","CGI_shore"]
[10,2011092,2011212,121,35,0.209327923999475,0.0491095071765605,0.160218416822915,133.561508003535,"CG","10:2010949:2011830","CGI"]
[10,2011092,2011212,121,35,0.209327923999475,0.0491095071765605,0.160218416822915,133.561508003535,"CG","Os10g0132400","exon","Os10g0132400","Conserved hypothetical protein && - && -"]
[10,2020475,2020566,92,32,0.610659647138508,0.437579538826802,0.173080108311706,165.462249665242,"CHH","10:2019590:2021591","CGI_shore"]
[10,2020475,2020566,92,32,0.610659647138508,0.437579538826802,0.173080108311706,165.462249665242,"CHH","Os10g0132500","intron","Os10g0132500","Hypothetical conserved gene && sp|F2VYU4|PIK1_ORYSJ Disease resistance protein Pik-1 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-1 PE=1 SV=1 && -"]
[10,2029142,2029225,84,30,0.104954821203051,0.0280883753958943,0.0768664458071565,140.478665906025,"CHH","10:2028670:2030671","CGI_shore"]
[10,2029803,2029872,70,19,0.0666592115430233,0.0147550909671734,0.0519041205758499,80.7622016755598,"CHH","10:2028670:2030671","CGI_shore"]
[10,2032944,2033017,74,29,0.188506097670278,0.0341325108601508,0.154373586810128,142.402153125618,"CHH","10:2032969:2033440","CGI"]
[10,2032944,2033017,74,29,0.188506097670278,0.0341325108601508,0.154373586810128,142.402153125618,"CHH","10:2030968:2032968","CGI_shore"]
[10,2086005,2086134,130,42,0.132817168404881,0.0613796399711387,0.0714375284337422,188.576622010956,"CHH","10:2084319:2086319","CGI_shore"]
[10,2086005,2086134,130,42,0.132817168404881,0.0613796399711387,0.0714375284337422,188.576622010956,"CHH","10:2085318:2087318","CGI_shore"]
[10,2086005,2086134,130,42,0.132817168404881,0.0613796399711387,0.0714375284337422,188.576622010956,"CHH","Os10g0133500","promoter","Os10g0133500","Transferase family protein && sp|Q0ING3|SHT2_ORYSJ Spermidine hydroxycinnamoyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0458100 PE=3 SV=1 && PF02458:Transferase family"]
[10,2311700,2311853,154,44,0.198768080718285,0.0992870028172045,0.0994810779010804,245.86334084875,"CHH","Os10g0137100","promoter","Os10g0137100","Conserved hypothetical protein && - && -"]
[10,2332007,2332070,64,15,0.168891834485075,0.0333487643698133,0.135543070115262,84.0072721837165,"CHH","10:2324748:2334362","CGI"]
[10,2472297,2472388,92,27,0.215692505751353,0.0760544920908205,0.139638013660533,162.80162411796,"CHH","10:2469830:2472790","CGI"]
[10,2478871,2479017,147,39,0.0336805038361338,0.00182855053117634,0.0318519533049575,186.302110234473,"CHH","10:2477922:2479923","CGI_shore"]
[10,2508635,2508831,197,53,0.197784807302912,0.0801285842133897,0.117656223089522,279.935192428476,"CHH","Os10g0140900","promoter","Os10g0140900","Similar to serine-type endopeptidase inhibitor && - && -"]
[10,2901268,2901457,190,42,0.12543673364382,0.0399136449071484,0.0855230887366714,185.821615546688,"CHH","10:2901095:2903096","CGI_shore"]
[10,3002917,3002975,59,24,0.258164103863758,0.150910302160827,0.107253801702931,118.922005956519,"CHH","Os10g0150300","promoter","Os10g0150300","Protein of unknown function DUF1210 family protein && - && PF01190:Pollen proteins Ole e I like"]
[10,3019329,3019408,80,17,0.231197272364769,0.0495069570141402,0.181690315350629,106.170968490357,"CHH","10:3019304:3021304","CGI_shore"]
[10,3145515,3145596,82,16,0.850193481047349,0.526525796788035,0.323667684259314,75.8091358223423,"CG","10:3145403:3147556","CGI"]
[10,3495162,3495288,127,27,0.453548944225782,0.162530321075772,0.29101862315001,129.689989231337,"CHG","10:3495170:3495563","CGI"]
[10,3630559,3630693,135,42,0.149154990182791,0.0441614227413602,0.104993567441431,196.602695130433,"CHH","10:3628733:3630734","CGI_shore"]
[10,3631940,3632146,207,79,0.216656542736967,0.114165508671123,0.102491034065844,360.716883564995,"CHH","10:3630014:3632014","CGI_shore"]
[10,3852195,3852465,271,84,0.335820484642243,0.218940392104575,0.116880092537668,395.31550398411,"CHH","Os10g0160100","promoter","Os10g0160100","Glycoside hydrolase, family 17 protein && sp|Q9FHX5|E1310_ARATH Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana OX=3702 GN=At5g42100 PE=2 SV=1 && PF00332:Glycosyl hydrolases family 17"]
[10,3914529,3914715,187,39,0.275957069054233,0.0663579811588831,0.20959908789535,268.755397653733,"CHH","10:3913243:3915243","CGI_shore"]
[10,4044810,4045031,222,33,0.47953177258691,0.207044060911565,0.272487711675345,215.08674904233,"CHH","10:4042789:4045890","CGI"]
[10,4047402,4047573,172,44,0.215921437787561,0.0483770104453743,0.167544427342186,302.673977853412,"CHH","10:4045890:4047891","CGI_shore"]
[10,4210140,4210215,76,33,0.404311332603173,0.257774879028526,0.146536453574647,150.646414721367,"CHH","Os10g0162854","promoter","Os10g0162854","Similar to OSIGBa0106P14.3 protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[10,4212426,4212720,295,86,0.326804903648866,0.154131977786162,0.172672925862704,501.607116651275,"CHH","Os10g0162854","utr3","Os10g0162854","Similar to OSIGBa0106P14.3 protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[10,4253763,4253920,158,38,0.255117893047666,0.117514785217365,0.137603107830302,193.848497594517,"CHH","10:4252564:4254565","CGI_shore"]
[10,4564020,4564237,218,28,0.741542673937359,0.111603778443879,0.62993889549348,235.75655107895,"CG","10:4563531:4564320","CGI"]
[10,4624301,4624548,248,96,0.163803407737274,0.0257911221833722,0.138012285553901,545.296922874144,"CHH","10:4623654:4625654","CGI_shore"]
[10,4727506,4727709,204,73,0.4368061605588,0.295578729480877,0.141227431077923,376.143933529547,"CHH","10:4726831:4727951","CGI"]
[10,5053834,5054003,170,48,0.12837486090987,0.0295099721987799,0.0988648887110905,281.882832606879,"CHH","10:5053365:5055365","CGI_shore"]
[10,5053834,5054003,170,48,0.12837486090987,0.0295099721987799,0.0988648887110905,281.882832606879,"CHH","10:5053716:5054094","CGI"]
[10,5348446,5348607,162,42,0.171214712546166,0.0177598467541716,0.153454865791994,194.969342264975,"CHH","10:5348534:5353156","CGI"]
[10,5507684,5507821,138,35,0.102780041138346,0.0104627037943705,0.0923173373439755,214.393360747239,"CHH","10:5507150:5509151","CGI_shore"]
[10,5507684,5507821,138,35,0.102780041138346,0.0104627037943705,0.0923173373439755,214.393360747239,"CHH","10:5507462:5509462","CGI_shore"]
[10,5703776,5703867,92,6,0.458502076599485,0.314230168158702,0.144271908440783,35.3610174226028,"CG","10:5703562:5703778","CGI"]
[10,5723341,5723436,96,24,0.0415292609832806,0.00865787897714461,0.032871382006136,124.337327823072,"CHH","10:5722391:5724392","CGI_shore"]
[10,5803635,5804208,574,181,0.162674560425307,0.0695859325769081,0.0930886278483986,1050.52174456849,"CHH","10:5803631:5805632","CGI_shore"]
[10,5881452,5881645,194,59,0.149600089577729,0.0336246716995486,0.11597541787818,405.648510225651,"CHH","10:5880614:5882614","CGI_shore"]
[10,5896062,5896174,113,33,0.09894354443864,0.0211918524430836,0.0777516919955565,150.302093718785,"CHH","10:5895258:5897258","CGI_shore"]
[10,6060435,6060546,112,46,0.274289646252697,0.0883472348169061,0.185942411435791,267.096401148985,"CHH","10:6054806:6069381","CGI"]
[10,6088954,6089030,77,18,0.224168404695495,0.114752882892191,0.109415521803304,77.742012495193,"CHH","10:6087831:6089832","CGI_shore"]
[10,6277619,6277703,85,17,0.414911557791778,0.260681426065481,0.154230131726297,76.9846368283653,"CHH","10:6276723:6278724","CGI_shore"]
[10,6282904,6282982,79,36,0.14822807242862,0.0585457543491814,0.089682318079439,170.987926118237,"CHH","10:6282063:6284231","CGI"]
[10,6378329,6378446,118,56,0.162665115420894,0.0639552559947275,0.0987098594261662,248.907955525449,"CHH","10:6378303:6380304","CGI_shore"]
[10,6480837,6480967,131,39,0.0741134557695527,0.0263455523283698,0.0477679034411828,180.842631268434,"CHH","10:6479737:6481738","CGI_shore"]
[10,6498372,6498422,51,16,0.0982867525245874,0.0332998963987245,0.0649868561258629,77.1794306192629,"CHH","Os10g0193500","intron","OsSTA239","Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor domain containing protein && - && PF14368:Probable lipid transfer"]
[10,6579711,6579767,57,15,0.109904822715567,0.0411283793265626,0.0687764433890041,73.5564109177272,"CHH","10:6578561:6580562","CGI_shore"]
[10,6711557,6711650,94,34,0.144814883723947,0.0554762034695089,0.089338680254438,164.243444071939,"CHH","10:6711498:6712843","CGI"]
[10,6937414,6937592,179,66,0.157985399520085,0.0676430994370824,0.0903423000830026,317.264656803534,"CHH","10:6937449:6939449","CGI_shore"]
[10,7113762,7113899,138,30,0.111789371051407,0.0201587894062375,0.0916305816451696,179.282011164581,"CHH","10:7035079:7215631","CGI"]
[10,7358656,7358768,113,18,0.198533241379992,0.0211033804245765,0.177429860955416,92.9222814398251,"CHH","10:7358703:7359689","CGI"]
[10,7501890,7502187,298,75,0.384577994338797,0.163331107563309,0.221246886775488,456.646668398786,"CHH","10:7500625:7502625","CGI_shore"]
[10,7691468,7691809,342,99,0.168681660447412,0.0838385231611752,0.0848431372862364,459.222531527655,"CHH","Os10g0208500","exon","Os10g0208500","Hypothetical protein && - && -"]
[10,7692053,7692120,68,8,0.858427952111874,0.641233433131303,0.21719451898057,35.6555251878446,"CG","10:7692004:7693042","CGI"]
[10,7790487,7790577,91,16,0.150825195539058,0.0497361275965169,0.101089067942541,82.9918915503039,"CHH","10:7789610:7790550","CGI"]
[10,7916039,7916100,62,22,0.129459159971898,0.0129145726828035,0.116544587289095,111.260947507392,"CHH","10:7915045:7917046","CGI_shore"]
[10,7997034,7997141,108,23,0.107860672875948,0.0314379055747197,0.0764227673012286,101.890436464157,"CHH","Os10g0213800","promoter","Os10g0213800","Hypothetical conserved gene && - && -"]
[10,8044908,8045107,200,54,0.105406659638147,0.0411048041899775,0.0643018554481696,240.132905079149,"CHH","10:8043730:8045731","CGI_shore"]
[10,8425706,8425776,71,7,0.307253335997652,0.176058295763236,0.131195040234416,33.2091263767589,"CHG","10:8423875:8425876","CGI_shore"]
[10,8588264,8588319,56,26,0.121444245977579,0.0427922547401767,0.0786519912374025,114.325622407582,"CHH","10:8580169:8608660","CGI"]
[10,8659781,8659971,191,68,0.40723216568419,0.240463699781261,0.166768465902929,338.947796934333,"CHH","10:8658311:8660311","CGI_shore"]
[10,8893047,8893137,91,23,0.127162789171083,0.0392704277488776,0.087892361422205,151.18829914668,"CHH","Os10g0323000","intron","Os10g0323000","Conserved hypothetical protein && sp|Q7XFU9|Y1030_ORYSJ B3 domain-containing protein Os10g0323000 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0323000 PE=2 SV=1 && -"]
[10,8945402,8945654,253,69,0.345199726066628,0.0831049328193301,0.262094793247298,402.705640166033,"CHH","10:8943985:8946739","CGI"]
[10,9171225,9171402,178,61,0.137020678881522,0.0574369552873423,0.0795837235941796,310.983322748479,"CHH","10:9171260:9173261","CGI_shore"]
[10,9252167,9252257,91,32,0.0640357854458711,0.0132555996149366,0.0507801858309344,142.53062421179,"CHH","10:9250291:9252292","CGI_shore"]
[10,9355374,9355551,178,56,0.0700516761983676,0.0193935123580268,0.0506581638403408,284.672463171845,"CHH","Os10g0330600","exon","BETA-GALACTOSIDASE 12","Glycoside hydrolase, family 35 protein && sp|Q7G3T8|BGA13_ORYSJ Beta-galactosidase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0330600 PE=2 SV=1 && PF02140:Galactose binding lectin domain|PF01301:Glycosyl hydrolases family 35|PF17834:Beta-sandwich domain in beta galactosidase"]
[10,9378634,9378734,101,20,0.494206476754245,0.28713692045334,0.207069556300905,106.759257034195,"CG","10:9378668:9380669","CGI_shore"]
[10,9786666,9786780,115,37,0.332830741893784,0.163764135713246,0.169066606180537,173.353939528763,"CHH","10:9785676:9798556","CGI"]
[10,9793799,9793891,93,29,0.13187641053076,0.0369075379484568,0.094968872582303,138.622252646621,"CHH","10:9785676:9798556","CGI"]
[10,9894652,9895001,350,96,0.195109990968057,0.0968279206802181,0.0982820702878389,456.271344520008,"CHH","10:9892695:9894696","CGI_shore"]
[10,10105400,10105456,57,18,0.147463665273406,0.021202427819476,0.12626123745393,85.5628156807586,"CHH","10:10105293:10107293","CGI_shore"]
[10,10160989,10161055,67,15,0.213861258032563,0.117910245716582,0.0959510123159807,70.6690596784324,"CHH","10:10159282:10161282","CGI_shore"]
[10,10575792,10576042,251,56,0.219950683488875,0.0310861604316971,0.188864523057177,380.936244522455,"CHH","10:10575574:10577575","CGI_shore"]
[10,10630050,10630151,102,28,0.0810553174922452,0.00722039281336732,0.0738349246788779,164.343938321738,"CHH","10:10630029:10630494","CGI"]
[10,10747034,10747114,81,16,0.253460462928401,0.118603264763114,0.134857198165287,86.4738220769092,"CHH","10:10746839:10748840","CGI_shore"]
[10,10769797,10770001,205,77,0.20959940157516,0.0910162939189762,0.118583107656184,465.121636179886,"CHH","Os10g0352500","promoter","Os10g0352500","Similar to cDNA clone:J013022N21, full insert sequence && - && -"]
[10,11356865,11356990,126,41,0.112716258555041,0.0515740668820823,0.0611421916729585,170.510578893103,"CHH","10:11356702:11358702","CGI_shore"]
[10,11413836,11413993,158,30,0.769450334160223,0.402186741435107,0.367263592725116,199.039223798867,"CG","Os10g0365800","promoter","Os10g0365800","Protein of unknown function DUF3615 domain containing protein && - && PF12274:Protein of unknown function (DUF3615)"]
[10,11666449,11666528,80,18,0.479519289993207,0.32665847641286,0.152860813580347,99.9112543484944,"CHH","Os10g0370400","utr3","Os10g0370400","Similar to NB-ARC domain containing protein && sp|F7J0M6|RGA4S_ORYSJ Disease resistance protein RGA4 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA4 PE=2 SV=1 && -"]
[10,11724536,11724586,51,17,0.212079586592887,0.12636868018987,0.0857109064030175,89.67967575097,"CHH","10:11723788:11725789","CGI_shore"]
[10,11724723,11724897,175,46,0.316694599686284,0.181341010159211,0.135353589527073,222.156778319744,"CHH","Os10g0371000","intron","Os10g0371000","Similar to Pollen proteins Ole e I family protein, expressed && sp|P33050|PSC13_MAIZE Pollen-specific protein C13 OS=Zea mays OX=4577 GN=MGS1 PE=2 SV=1 && PF01190:Pollen proteins Ole e I like"]
[10,11875229,11875398,170,42,0.0805029476510887,0.0205209184755944,0.0599820291754943,208.757542057628,"CHH","10:11874534:11876534","CGI_shore"]
[10,11907530,11907706,177,34,0.374621018642892,0.214258772644241,0.160362245998651,165.846021786678,"CHH","10:11905796:11907796","CGI_shore"]
[10,11932624,11932946,323,112,0.221786588678334,0.0642123262635433,0.157574262414791,1000.82715611934,"CHH","10:11932538:11934539","CGI_shore"]
[10,12011926,12012118,193,40,0.232965519771714,0.0380347159034846,0.19493080386823,213.603424336049,"CHH","10:12011427:12013427","CGI_shore"]
[10,12104424,12104475,52,17,0.267632986974794,0.047177144949262,0.220455842025532,86.8383796191928,"CHH","10:12104364:12106364","CGI_shore"]
[10,12214455,12214635,181,44,0.233427705642771,0.108396316503197,0.125031389139573,240.135282179334,"CHH","Os10g0380100","promoter","TRYPTAMINE HYDROXYCINNAMOYL TRANSFERASE 2","Transferase family protein && sp|Q8LMI4|THT2_ORYSJ Tryptamine hydroxycinnamoyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=THT2 PE=1 SV=1 && PF02458:Transferase family"]
[10,12850194,12850276,83,23,0.0751511710866531,0.00607890195887764,0.0690722691277754,110.655871620447,"CHH","Os10g0388600","intron","Os10g0388600","Hypothetical conserved gene && - && PF02902:Ulp1 protease family, C-terminal catalytic domain"]
[10,12893295,12893611,317,84,0.366809368707898,0.160832483161767,0.205976885546131,556.59260723796,"CHH","10:12892078:12894613","CGI"]
[10,12902469,12902760,292,39,0.320893331805468,0.0313333225111389,0.289560009294329,321.081991017019,"CHH","10:12901920:12913559","CGI"]
[10,12991713,12991823,111,17,0.450068657183348,0.301629826835004,0.148438830348344,73.4720092175636,"CHH","10:12990121:12992121","CGI_shore"]
[10,13051147,13051286,140,35,0.210650300059358,0.0965940348876338,0.114056265171725,172.19296904208,"CHH","10:13050339:13052339","CGI_shore"]
[10,13120243,13120319,77,28,0.0994959667941139,0.0302974777495153,0.0691984890445986,164.954565389598,"CHH","10:13119438:13120304","CGI"]
[10,13141083,13141367,285,105,0.203861268374483,0.0834825385615181,0.120378729812964,510.526490443689,"CHH","Os10g0394000","promoter","GDSL ESTERASE/LIPASE PROTEIN 106","Similar to GDSL-like Lipase/Acylhydrolase family protein, expressed && sp|Q9FXJ1|GDL6_ARATH GDSL esterase/lipase At1g28570 OS=Arabidopsis thaliana OX=3702 GN=At1g28570 PE=3 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[10,13165500,13165685,186,72,0.0752958046519407,0.0232336039219937,0.0520622007299471,354.675004400104,"CHH","10:13165488:13167489","CGI_shore"]
[10,13482198,13482304,107,35,0.165341545902292,0.0734510351230995,0.091890510779193,160.327971549029,"CHH","10:13481914:13483915","CGI_shore"]
[10,13906820,13906949,130,27,0.357849699669473,0.165516992271908,0.192332707397565,117.961265785481,"CHH","10:13905592:13907593","CGI_shore"]
[10,13907404,13907533,130,37,0.167239356145039,0.0322513429334894,0.134988013211549,198.602005691799,"CHH","Os10g0406600","promoter","Os10g0406600","Complex 1 LYR protein family protein && - && -"]
[10,14049858,14049910,53,26,0.0508806564143303,0.0152494599761558,0.0356311964381745,121.170935269712,"CHH","10:14049616:14049950","CGI"]
[10,14116043,14116138,96,29,0.051118240070823,2.15975999964649E-3,0.0489584800711765,136.732683477268,"CHH","10:14114977:14116978","CGI_shore"]
[10,14484624,14484681,58,26,0.107146657626227,0.018765042804668,0.0883816148215591,154.747172505183,"CHH","10:14483980:14485980","CGI_shore"]
[10,14521199,14521326,128,32,0.30564284412723,0.146163637096942,0.159479207030288,147.701360330438,"CHH","10:14521171:14523172","CGI_shore"]
[10,14664748,14664938,191,50,0.308560303186544,0.13137518355713,0.177185119629414,320.104256515858,"CHH","10:14663606:14665607","CGI_shore"]
[10,14730735,14730829,95,15,0.264794045359718,0.121623774638267,0.143170270721451,67.4650819241172,"CHG","10:14729746:14731746","CGI_shore"]
[10,14879367,14879579,213,59,0.15240139568994,0.0633887251761982,0.0890126705137414,316.308183841876,"CHH","10:14879267:14881268","CGI_shore"]
[10,15170940,15171142,203,39,0.296563777260231,0.0844453011321899,0.212118476128041,228.647206744938,"CHH","Os10g0426600","promoter","MATH-BTB protein 29, MDC protein with a BTB domain 29, MDC protein having BTB domain 29","Conserved hypothetical protein && sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 && PF00651:BTB/POZ domain"]
[10,15270134,15270215,82,27,0.177788207835177,0.0148074293554733,0.162980778479704,156.387893729326,"CHH","10:15269673:15271674","CGI_shore"]
[10,15371512,15371683,172,25,0.636788936536418,0.249955929336085,0.386833007200333,135.043685071742,"CHG","10:15368156:15381395","CGI"]
[10,15617186,15617478,293,88,0.378351928672322,0.179275048576486,0.199076880095836,479.85448271429,"CHH","10:15615894:15617895","CGI_shore"]
[10,15794533,15794703,171,55,0.180111572389884,0.084763041634282,0.0953485307556016,270.188178351356,"CHH","10:15793012:15795013","CGI_shore"]
[10,15880730,15880804,75,14,0.368201276038716,0.22032851581734,0.147872760221376,69.8441410892602,"CHH","10:15879176:15881176","CGI_shore"]
[10,15976029,15976153,125,42,0.521764509836185,0.369592525155509,0.152171984680676,222.792651977043,"CHH","Os10g0443600","promoter","Os10g0443600","Hypothetical protein && sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1 && -"]
[10,15997084,15997231,148,51,0.582008141043508,0.435819647270161,0.146188493773347,232.310098335541,"CHH","Os10g0444100","promoter","Os10g0444100","Homeodomain-like containing protein && - && PF00249:Myb-like DNA-binding domain"]
[10,16253427,16253519,93,15,0.189153272852513,0.0419811791938733,0.14717209365864,71.4094214695002,"CHH","10:16252654:16254654","CGI_shore"]
[10,16311104,16311180,77,22,0.13684187045711,0.0661352519051484,0.0707066185519613,92.5650477621219,"CHH","10:16311058:16313058","CGI_shore"]
[10,16405004,16405180,177,46,0.199591278190597,0.0190679798602948,0.180523298330302,322.376602674945,"CHH","10:16403320:16405320","CGI_shore"]
[10,16484066,16484291,226,61,0.227452628901484,0.107898747240288,0.119553881661196,346.731097641085,"CHH","10:16482385:16484385","CGI_shore"]
[10,16674768,16674938,171,73,0.2242923433298,0.119589752810594,0.104702590519206,346.359982338398,"CHH","10:16674298:16676682","CGI"]
[10,16675085,16675259,175,63,0.120384175842174,0.0373184004533128,0.0830657753888608,330.794715925814,"CHH","Os10g0456200","promoter","intracellular Ras-group-related LRR protein 8","Similar to small GTP-binding protein domain && sp|Q7XDQ7|PIRL8_ORYSJ Plant intracellular Ras-group-related LRR protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=IRL8 PE=2 SV=1 && -"]
[10,16894454,16894628,175,67,0.149357777869859,0.038989864353001,0.110367913516858,319.067376811134,"CG","10:16886053:16898757","CGI"]
[10,17176770,17176904,135,40,0.250885503897996,0.137495982047734,0.113389521850262,201.115255626909,"CHH","10:17170984:17182944","CGI"]
[10,17269659,17269859,201,53,0.326630206667955,0.1969746524148,0.129655554253155,263.116447615542,"CHH","Os10g0467900","intron","Os10g0467900","Protein kinase, catalytic domain domain containing protein && sp|Q8VZG8|MIK2_ARATH MDIS1-interacting receptor like kinase 2 OS=Arabidopsis thaliana OX=3702 GN=MIK2 PE=1 SV=3 && PF13855:Leucine rich repeat|PF00069:Protein kinase domain"]
[10,17328551,17328677,127,28,0.254973799981707,0.0583090822874672,0.19666471769424,140.929743854653,"CHH","10:17327853:17329853","CGI_shore"]
[10,17395906,17396063,158,44,0.438660180865201,0.204777429278113,0.233882751587088,280.171257720269,"CG","Os10g0470100","promoter","Os10g0470100","Conserved hypothetical protein && - && -"]
[10,17405339,17405392,54,19,0.249451351319475,0.144011332281444,0.105440019038031,88.6740321986161,"CHH","10:17403688:17405688","CGI_shore"]
[10,17651146,17651250,105,28,0.150517884042368,0.0701338924571358,0.0803839915852325,129.273531865147,"CHH","10:17649794:17651794","CGI_shore"]
[10,17956990,17957128,139,23,0.616838695281033,0.374723291063642,0.242115404217392,126.888954422758,"CHH","10:17956850:17958851","CGI_shore"]
[10,17976702,17977023,322,129,0.109532526824086,0.0397581568100282,0.069774370014058,617.685431776892,"CHH","10:17975638:17980659","CGI"]
[10,18182870,18182964,95,40,0.129295218777329,0.0614669543079611,0.067828264469368,180.980652553986,"CHH","10:18181746:18183747","CGI_shore"]
[10,18374349,18374410,62,15,0.122685185975298,0.0255164131369815,0.0971687728383163,90.176187144021,"CHH","10:18373689:18375689","CGI_shore"]
[10,18416961,18417013,53,9,0.799733563292817,0.409455799322511,0.390277763970306,44.7216802873498,"CG","10:18408505:18430308","CGI"]
[10,18650941,18651010,70,23,0.23690582349951,0.0791916367430071,0.157714186756503,129.97516126735,"CHH","10:18649571:18651571","CGI_shore"]
[10,18732137,18732456,320,80,0.418878860886239,0.275862335395146,0.143016525491093,396.711065289801,"CHH","10:18731100:18733100","CGI_shore"]
[10,18851030,18851090,61,17,0.142304375631035,0.0566269156567623,0.0856774599742723,60.7240483045761,"CG","Os10g0495433","promoter","Os10g0495433","BRO1 domain domain containing protein && - && -"]
[10,18890497,18890619,123,22,0.600792360311157,0.421598981573351,0.179193378737806,105.167030783689,"CHG","10:18888783:18890784","CGI_shore"]
[10,18980217,18980407,191,34,0.317609017128614,0.0559465480377712,0.261662469090843,232.033126481252,"CHH","Os10g0497800","promoter","Os10g0497800","Similar to Prolyl 4-hydroxylase, alpha subunit-like protein && sp|Q9LN20|P4H3_ARATH Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana OX=3702 GN=P4H3 PE=2 SV=1 && PF13640:2OG-Fe(II) oxygenase superfamily"]
[10,19151420,19151628,209,66,0.229454664080348,0.100831576789277,0.128623087291071,363.368721779552,"CHH","10:19151522:19153523","CGI_shore"]
[10,19589269,19589392,124,43,0.124203693221884,0.0306323201196008,0.0935713731022834,239.379241584745,"CHH","10:19588217:19590218","CGI_shore"]
[10,19655743,19655972,230,91,0.362765867656786,0.077190033234632,0.285575834422154,809.962148152818,"CHH","10:19655799:19657800","CGI_shore"]
[10,19780036,19780193,158,23,0.366417411071654,0.104987012978188,0.261430398093465,128.9188225295,"CHH","Os10g0513200","intron","NOD26 LIKE INTRINSIC PROTEIN 3;1","Boric acid channel, Regulation of boron distributio && sp|Q0IWF3|NIP31_ORYSJ Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIP3-1 PE=2 SV=2 && PF00230:Major intrinsic protein"]
[10,19987169,19987283,115,40,0.0955553777526451,0.00803914641479668,0.0875162313378484,205.936042449858,"CHH","ENSRNA049465971","exon","mir-166","mir-166 microRNA precursor && - && -"]
[10,20006700,20007179,480,116,0.383197536798517,0.215260410946673,0.167937125851845,583.493695194863,"CHH","10:20004728:20006729","CGI_shore"]
[10,20347748,20347880,133,35,0.141156469378055,0.0243158625628297,0.116840606815225,192.770878592919,"CHH","Os10g0523700","promoter","arogenate dehydratase","Prephenate dehydratase domain containing protein && sp|D3U715|AROD1_PETHY Arogenate dehydratase 1 OS=Petunia hybrida OX=4102 GN=ADT1 PE=1 SV=1 && PF00800:Prephenate dehydratase"]
[10,20704601,20704707,107,38,0.168666775037717,0.0155298252380619,0.153136949799655,193.912469202684,"CHH","10:20702895:20704896","CGI_shore"]
[10,20807735,20807799,65,13,0.429246989383553,0.214917398096001,0.214329591287552,101.482220784488,"CHH","10:20806303:20808304","CGI_shore"]
[10,20841554,20841606,53,19,0.476643607696483,0.375599847340687,0.101043760355796,70.3779877437118,"CHH","10:20840113:20842114","CGI_shore"]
[10,20852639,20852718,80,20,0.157449731783537,0.0590285122300044,0.0984212195535322,96.5348298682345,"CHH","10:20852164:20854164","CGI_shore"]
[10,21104069,21104192,124,41,0.206684131082684,0.0850603003922702,0.121623830690414,187.469990914712,"CHH","Os10g0540900","promoter","Os10g0540900","Inorganic pyrophosphatase domain containing protein && - && PF12274:Protein of unknown function (DUF3615)"]
[10,21153391,21153447,57,11,0.800653765914241,0.488020701643462,0.312633064270779,61.2327899884241,"CG","Os10g0541700","promoter","Os10g0541700","Hypothetical gene && - && -"]
[10,21426036,21426152,117,40,0.205726394210273,0.105179056849027,0.100547337361246,187.933065546028,"CHH","10:21426005:21428006","CGI_shore"]
[10,21730700,21730753,54,22,0.0921967259444235,0.0235232130167788,0.0686735129276447,100.592757649811,"CHH","10:21729665:21731665","CGI_shore"]
[10,21867025,21867079,55,20,0.103650448042346,0.0464168834060307,0.0572335646363157,90.6286894592378,"CG","Os10g0556200","exon","basic helix-loop-helix protein 113","Hypothetical conserved gene && sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis thaliana OX=3702 GN=UNE10 PE=2 SV=1 && PF00010:Helix-loop-helix DNA-binding domain"]
[10,21954675,21954910,236,75,0.121516355215419,0.0314733649059321,0.0900429903094866,423.115506960505,"CHH","Os10g0557800","utr5","Os10g0557800","Conserved hypothetical protein && - && -"]
[10,22120170,22120393,224,68,0.204931415641503,0.0717153712917172,0.133216044349786,354.450364259937,"CHH","Os10g0561250","promoter","Os10g0561250","Hypothetical protein && sp|Q1JPM5|OFT30_ARATH O-fucosyltransferase 30 OS=Arabidopsis thaliana OX=3702 GN=OFUT30 PE=2 SV=1 && PF10250:GDP-fucose protein O-fucosyltransferase"]
[10,22487765,22487821,57,21,0.179262712898293,0.113318542012897,0.0659441708853959,88.480882464872,"CHH","Os10g0567400","promoter","chlorophyll a oxygenase, Chlorophyll a oxygenase 1, Lls1-homologue of maize, 3, 8-divinyl chlorophyllide a 8-vinyl reductase","Similar to Rieske && sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAO PE=2 SV=1 && PF08417:Pheophorbide a oxygenase|PF00355:Rieske [2Fe-2S] domain"]
[11,45857,46034,178,44,0.135589789964559,0.0499628453398187,0.0856269446247405,219.737208953069,"CHH","11:45500:47501","CGI_shore"]
[11,87826,88024,199,40,0.185557301146142,0.0277560478197928,0.15780125332635,217.723124055817,"CHH","Os11g0102200","intron","PHOT1B","Similar to NPH1-1 && sp|Q2RBR1|PHT1B_ORYSJ Phototropin-1B OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1B PE=1 SV=2 && PF00069:Protein kinase domain|PF13426:PAS domain"]
[11,269378,269526,149,40,0.467604390018851,0.247981524215808,0.219622865803043,186.034908373503,"CHH","Os11g0106000","intron","Os11g0106000","Conserved hypothetical protein && - && -"]
[11,433389,433443,55,10,0.864117105159069,0.47183777595212,0.392279329206949,48.4845128990767,"CG","11:433286:435286","CGI_shore"]
[11,848588,848693,106,26,0.138951988557992,0.0588489841150051,0.0801030044429865,111.033426877291,"CHH","Os11g0118800","promoter","Os11g0118800","Similar to Expressed protein-like protein && - && -"]
[11,1074845,1074962,118,16,0.110565378343206,0.0119538734381478,0.0986115049050582,83.7320896720084,"CHH","Os11g0123400","exon","Os11g0123400","Similar to Phosphoethanolamine cytidylyltransferase && sp|Q9ZVI9|PECT1_ARATH Ethanolamine-phosphate cytidylyltransferase OS=Arabidopsis thaliana OX=3702 GN=PECT1 PE=1 SV=1 && PF01467:Cytidylyltransferase-like"]
[11,1220116,1220182,67,16,0.1407074122803,0.0325210494140365,0.108186362866264,80.5833279676573,"CHH","11:1218325:1220325","CGI_shore"]
[11,1713204,1713434,231,54,0.355864427611556,0.172049802460747,0.183814625150809,349.790248652198,"CHH","11:1712746:1714746","CGI_shore"]
[11,1749402,1750682,1281,24,0.348492631469069,0.106118905423286,0.242373726045782,126.916003120171,"CHH","11:1749447:1754052","CGI"]
[11,2174460,2174526,67,15,0.11791558529107,0.0584882073413536,0.0594273779497167,76.0351797128116,"CHH","11:2174506:2174898","CGI"]
[11,2377357,2377544,188,41,0.478233348004534,0.310536271511987,0.167697076492548,192.971948138717,"CHH","11:2375578:2380434","CGI"]
[11,2689335,2689454,120,30,0.444632664692475,0.269067207099534,0.175565457592941,157.803751920741,"CHH","11:2689175:2691176","CGI_shore"]
[11,2916319,2916674,356,131,0.153240468382604,0.0372976028055391,0.115942865577065,931.364930084256,"CHH","Os11g0160100","intron","Os11g0160100","Zinc finger, RING/FYVE/PHD-type domain containing protein && - && -"]
[11,2916319,2916674,356,131,0.153240468382604,0.0372976028055391,0.115942865577065,931.364930084256,"CHH","11:2915949:2917949","CGI_shore"]
[11,3033361,3033488,128,25,0.404637578518987,0.240593221934258,0.164044356584729,122.426005344672,"CHH","11:3031910:3033911","CGI_shore"]
[11,3221189,3221246,58,21,0.105828159140056,0.0254108730339392,0.0804172861061166,118.993540432608,"CHH","11:3219321:3221321","CGI_shore"]
[11,3318991,3319042,52,17,0.10741476435882,0.050028863096825,0.0573859012619951,74.4945691940943,"CHH","11:3317733:3319733","CGI_shore"]
[11,3499104,3499161,58,25,0.126293925404436,0.0494264417780929,0.0768674836263433,114.19822477824,"CG","Os11g0171500","exon","CALCIUM-DEPENDENT PROTEIN KINASE 24","Calcium-dependent protein kinas && sp|Q53P85|CDPKO_ORYSJ Calcium-dependent protein kinase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK24 PE=1 SV=1 && PF00069:Protein kinase domain|PF13499:EF-hand domain pair"]
[11,3737483,3737611,129,39,0.0960365741021389,0.025392392254474,0.0706441818476648,175.603338301744,"CHH","Os11g0175300","exon","Os11g0175300","Domain of unknown function DUF1618 domain containing protein && - && -"]
[11,3977760,3978031,272,72,0.178318465606523,0.0313856138734437,0.14693285173308,355.216135700713,"CHH","11:3976409:3978410","CGI_shore"]
[11,4141622,4141806,185,51,0.155842296432625,0.0516612960693805,0.104181000363244,261.466934556313,"CHH","11:4140539:4142540","CGI_shore"]
[11,4211944,4212134,191,50,0.132919936635601,0.0519295643595831,0.0809903722760183,255.628109322339,"CHH","11:4207709:4214358","CGI"]
[11,4247044,4247214,171,32,0.426873148812366,0.222518025221073,0.204355123591294,180.917345925687,"CHH","11:4245284:4247284","CGI_shore"]
[11,4709411,4709484,74,23,0.0808711255390362,0.0109506180213051,0.0699205075177311,129.652171405186,"CHH","11:4709462:4711462","CGI_shore"]
[11,4807808,4807949,142,61,0.193948519332348,0.0584464393821528,0.135502079950195,279.006700323549,"CG","Os11g0195800","exon","Os11g0195800","Conserved hypothetical protein && - && -"]
[11,4837103,4837214,112,29,0.14760630264697,0.0565192266576044,0.0910870759893659,150.964552880423,"CHH","11:4833554:4837505","CGI"]
[11,4887600,4887708,109,15,0.302123914767036,0.00843572881192855,0.293688185955108,74.1923501665056,"CHH","11:4886939:4888940","CGI_shore"]
[11,5009076,5009148,73,23,0.505859447013318,0.319017350273955,0.186842096739363,100.120903358935,"CHH","Os11g0199700","exon","Os11g0199700","Similar to VHS and GAT domain protein && sp|Q9LPL6|TOL3_ARATH TOM1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOL3 PE=1 SV=1 && -"]
[11,5209701,5209847,147,50,0.0912580621274187,0.0389851005966382,0.0522729615307804,226.388421984818,"CHH","11:5207925:5209925","CGI_shore"]
[11,5295657,5295777,121,44,0.190018022244259,0.0876763380153771,0.102341684228882,206.287695288892,"CHH","11:5294945:5295736","CGI"]
[11,5384620,5384747,128,46,0.0977295122622198,0.0372794062848424,0.0604501059773773,205.949878964033,"CHH","11:5383567:5385568","CGI_shore"]
[11,5555082,5555198,117,36,0.379379701287593,0.231511873166144,0.147867828121449,193.194956379816,"CHH","11:5553601:5555601","CGI_shore"]
[11,5579405,5579471,67,23,0.256589178985477,0.142888191429076,0.113700987556401,98.6524940672072,"CHH","11:5578483:5580484","CGI_shore"]
[11,5690534,5690594,61,24,0.0941487036161349,0.0207597454599731,0.0733889581561618,120.751273383671,"CHH","11:5688699:5690699","CGI_shore"]
[11,5756933,5757154,222,56,0.286410258679764,0.0915058882294341,0.19490437045033,462.789646914319,"CHH","Os11g0210600","intron","Alcohol dehydrogenase 3, alcohol dehydrogenase-3","Similar to Alcohol dehydrogenase (Fragment) && sp|P04707|ADH2_MAIZE Alcohol dehydrogenase 2 OS=Zea mays OX=4577 GN=ADH2 PE=2 SV=1 && PF00107:Zinc-binding dehydrogenase"]
[11,5827076,5827144,69,17,0.0958849370794014,0.0369581531226676,0.0589267839567338,76.6258797985266,"CHH","Os11g0212000","promoter","Os11g0212000","Similar to Leucine Rich Repeat family protein, expressed && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && PF13855:Leucine rich repeat|PF00931:NB-ARC domain"]
[11,5951306,5951372,67,19,0.104752120364704,0.0216338469369283,0.083118273427776,83.2809252335176,"CHH","11:5947376:5952951","CGI"]
[11,6005580,6005805,226,40,0.362809399845293,0.151741782808027,0.211067617037266,185.674762639721,"CHH","11:6003614:6005615","CGI_shore"]
[11,6108969,6109107,139,53,0.16400680251304,0.0580473090655127,0.105959493447527,267.895347783892,"CHH","11:6108232:6110233","CGI_shore"]
[11,6373833,6373925,93,25,0.377783968632306,0.211457084613413,0.166326884018893,140.623526904839,"CHH","11:6373421:6375421","CGI_shore"]
[11,6537923,6538221,299,67,0.213804764902522,0.104238820827901,0.109565944074621,302.396665067399,"CHH","Os11g0224900","promoter","R-gene analog 3","Similar to NBS-LRR protein (Fragment) && sp|Q6L3L0|R1B23_SOLDE Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum OX=50514 GN=R1B-23 PE=3 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[11,6578878,6578954,77,13,0.194944521938912,0.0219014960300716,0.17304302590884,68.556921220279,"CHH","11:6578872:6582720","CGI"]
[11,6782746,6782971,226,68,0.0760767204985397,0.0230779418787319,0.0529987786198078,315.243089155518,"CHH","11:6781063:6783064","CGI_shore"]
[11,6852600,6852679,80,15,0.746303653231954,0.564803178640683,0.181500474591271,75.6889831382316,"CG","11:6852249:6852820","CGI"]
[11,6924275,6924372,98,25,0.114880960556996,0.0326772169881989,0.0822037435687976,107.254161335407,"CHH","11:6922226:6927140","CGI"]
[11,6938105,6938202,98,36,0.435022331446141,0.257487377052503,0.177534954393638,160.954692898396,"CHH","11:6936917:6938918","CGI_shore"]
[11,7076511,7076718,208,24,0.376801686235122,0.0914550430809401,0.285346643154182,128.693744379288,"CHH","Os11g0233400","promoter","Os11g0233400","Similar to cDNA clone:J033099F01, full insert sequence && sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0328900 PE=2 SV=2 && -"]
[11,7191456,7191688,233,85,0.426382579422047,0.254332413430332,0.172050165991715,516.024961545941,"CG","11:7191657:7193657","CGI_shore"]
[11,7522023,7522196,174,50,0.249537035609933,0.0932814991789279,0.156255536431005,275.689970247733,"CHH","11:7522004:7522385","CGI"]
[11,7653876,7654085,210,68,0.303911117980295,0.114304932524211,0.189606185456084,479.674763849874,"CHH","11:7652272:7654273","CGI_shore"]
[11,7735543,7735738,196,58,0.252175127708637,0.133732649392706,0.11844247831593,315.39763591924,"CHH","Os11g0243925","promoter","Os11g0243925","Similar to ZmEBE-2 protein && - && -"]
[11,7840538,7840612,75,21,0.111918895779192,0.0561046662614168,0.0558142295177755,83.5299790006957,"CHH","11:7838542:7840542","CGI_shore"]
[11,7976536,7976679,144,41,0.194929837402637,0.0943848765937014,0.100544960808936,198.674172953235,"CHH","11:7976356:7978356","CGI_shore"]
[11,8032606,8032885,280,106,0.161071732137767,0.03584535631807,0.125226375819697,697.250685471722,"CHH","11:8032684:8034685","CGI_shore"]
[11,8053918,8054012,95,30,0.0679208747815424,0.0170115655244831,0.0509093092570592,174.291700070281,"CHH","11:8053058:8055058","CGI_shore"]
[11,8203044,8203105,62,25,0.127108884001076,0.0702233798051151,0.0568855041959605,99.3013837931409,"CHH","11:8201970:8203971","CGI_shore"]
[11,8542149,8542329,181,41,0.089713302922216,0.01459232780641,0.0751209751158059,180.918583242289,"CHH","Os11g0257800","intron","Os11g0257800","Hypothetical protein && - && -"]
[11,8977969,8978099,131,49,0.275040727952585,0.0772581313591113,0.197782596593474,284.442080433234,"CHH","11:8977397:8979398","CGI_shore"]
[11,9011179,9011247,69,26,0.123989182773895,0.03936195121444,0.0846272315594547,125.133571029181,"CHH","11:9011227:9011652","CGI"]
[11,9322377,9322478,102,16,0.248266922413741,0.0910549009752629,0.157212021438478,88.6918784938149,"CHH","11:9321172:9323172","CGI_shore"]
[11,9594551,9594659,109,43,0.362577091797094,0.242000393051172,0.120576698745922,198.880876535628,"CHH","11:9594127:9596128","CGI_shore"]
[11,9598708,9598790,83,33,0.209747410979388,0.123967440057448,0.0857799709219396,175.3107041505,"CHH","11:9596852:9598853","CGI_shore"]
[11,9779630,9779713,84,14,0.175584436358078,0.0167502513457839,0.158834185012294,70.9349600283097,"CHH","11:9777766:9779766","CGI_shore"]
[11,9811970,9812037,68,25,0.134820895830309,0.0249173267779865,0.109903569052322,135.093607039355,"CHH","11:9810053:9812053","CGI_shore"]
[11,10873096,10873346,251,67,0.218331835284049,0.0681964861940308,0.150135349090019,392.910603326511,"CHH","11:10871444:10873444","CGI_shore"]
[11,10973849,10973932,84,25,0.177644404896359,0.081619793409047,0.0960246114873121,153.667452823601,"CHH","Os11g0297650","promoter","Os11g0297650","Conserved hypothetical protein && sp|Q9SGZ5|BXL7_ARATH Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana OX=3702 GN=BXL7 PE=2 SV=2 && -"]
[11,10973849,10973932,84,25,0.177644404896359,0.081619793409047,0.0960246114873121,153.667452823601,"CHH","11:10973432:10975433","CGI_shore"]
[11,11358526,11358580,55,24,0.251894606715287,0.116788320754073,0.135106285961214,110.179503033103,"CHH","11:11354868:11358978","CGI"]
[11,11500135,11500259,125,39,0.109811437908776,0.0232818587100396,0.0865295791987369,197.819994783941,"CHH","11:11498260:11500261","CGI_shore"]
[11,11554568,11554646,79,9,0.609344876802968,0.373622674417961,0.235722202385007,40.4095413676882,"CHG","11:11553920:11555920","CGI_shore"]
[11,12008660,12008777,118,45,0.167950283594959,0.0231015888075898,0.144848694787369,213.195274118605,"CHH","11:12006776:12008776","CGI_shore"]
[11,12009262,12009457,196,64,0.115286579689621,0.0363503616378151,0.0789362180518059,448.988108022312,"CHH","11:12008646:12010646","CGI_shore"]
[11,12872022,12872138,117,43,0.0756144597580126,0.0194992314326852,0.0561152283253275,210.021197180196,"CHH","11:12870951:12872952","CGI_shore"]
[11,13368329,13368518,190,68,0.0736047654848509,0.0183424833193043,0.0552622821655466,365.653285143452,"CHH","11:13367267:13369267","CGI_shore"]
[11,13380988,13381058,71,25,0.130329415305181,0.066855300784778,0.0634741145204033,109.997185053798,"CHH","Os11g0424400","promoter","Os11g0424400","Conserved hypothetical protein && - && -"]
[11,13404551,13404654,104,19,0.353779284588351,0.0659494949007552,0.287829789687595,95.7771169621143,"CG","11:13404093:13404775","CGI"]
[11,13452604,13452661,58,9,0.882483328884187,0.747189147013224,0.135294181870963,36.7936564118306,"CG","11:13450861:13453025","CGI"]
[11,13630203,13630284,82,28,0.135366293234574,0.0283324474943553,0.107033845740218,148.317510788136,"CHH","11:13629759:13630317","CGI"]
[11,13631137,13631225,89,22,0.264335762772105,0.172559881444077,0.0917758813280286,101.135642331114,"CHH","11:13629520:13631520","CGI_shore"]
[11,13867585,13867694,110,29,0.0863246774001923,0.0103711992474678,0.0759534781527245,166.330237841228,"CHH","11:13866257:13868257","CGI_shore"]
[11,13876237,13876407,171,62,0.135501136422993,0.0600303862196882,0.0754707502033052,291.348469585028,"CHH","11:13876328:13878329","CGI_shore"]
[11,13959453,13959609,157,44,0.254324139115125,0.0346188206664109,0.219705318448714,267.359483057492,"CHH","Os11g0432600","intron","Os11g0432600","Similar to Beta-keto acyl reductase (Fragment) && sp|Q9FYL6|KCR2_ARATH Very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 OS=Arabidopsis thaliana OX=3702 GN=KCR2 PE=2 SV=1 && PF00106:short chain dehydrogenase"]
[11,13995235,13995386,152,35,0.398905865742782,0.18330305730551,0.215602808437273,188.0017225204,"CHH","11:13994438:13996438","CGI_shore"]
[11,14108331,14108415,85,34,0.147344743617874,0.0806021931842969,0.0667425504335772,151.502892410459,"CHH","11:14107627:14109627","CGI_shore"]
[11,14138158,14138511,354,124,0.0801474437140833,0.0281735711289923,0.051973872585091,539.255984283252,"CHH","Os11g0435500","promoter","Os11g0435500","Similar to alkaline alpha galactosidase 3 && sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 && -"]
[11,14377916,14378000,85,25,0.0577804829355407,0.0178121370410319,0.0399683458945088,123.359423581455,"CHH","Os11g0439300","promoter","Os11g0439300","Hypothetical protein && - && -"]
[11,14502577,14502674,98,20,0.209629513411912,0.111372582897028,0.0982569305148843,92.617635340785,"CHH","Os11g0440422","promoter","Os11g0440422","Calmodulin-binding protein, plant domain containing protein && - && PF07839:Plant calmodulin-binding domain"]
[11,14562186,14562259,74,24,0.0627237430625202,0.0229258406614444,0.0397979024010757,102.948879126979,"CHH","11:14561077:14563078","CGI_shore"]
[11,14637890,14637994,105,31,0.0633756834942921,0.0306811416913394,0.0326945418029526,118.881414478341,"CHH","11:14636695:14638696","CGI_shore"]
[11,14782772,14782825,54,18,0.12627414011602,0.0535362576451926,0.0727378824708269,88.2433910934378,"CHH","11:14782729:14783752","CGI"]
[11,15322084,15322317,234,53,0.421321193271851,0.203199757100792,0.218121436171058,336.294716565483,"CHH","11:15321727:15323728","CGI_shore"]
[11,15451172,15451279,108,14,0.164351565684879,0.0217857991595538,0.142565766525325,102.82730373548,"CHH","11:15451152:15453152","CGI_shore"]
[11,15629571,15629715,145,52,0.190933916648142,0.0471454580440378,0.143788458604104,232.95241903258,"CHH","11:15628232:15630232","CGI_shore"]
[11,15629571,15629715,145,52,0.190933916648142,0.0471454580440378,0.143788458604104,232.95241903258,"CHH","11:15629536:15631537","CGI_shore"]
[11,15702055,15702170,116,35,0.289800640945725,0.148066692447377,0.141733948498349,181.614364860652,"CHH","11:15701617:15703618","CGI_shore"]
[11,15709032,15709213,182,56,0.109067144976672,0.0345085992864143,0.0745585456902579,283.406744451173,"CHH","11:15709109:15711109","CGI_shore"]
[11,15902943,15903096,154,29,0.12681709400634,0.0133420917492624,0.113475002257077,169.661180037317,"CHH","Os11g0464600","promoter","Os11g0464600","Similar to dirigent-like protein pDIR9 && sp|Q9SS03|DIR21_ARATH Dirigent protein 21 OS=Arabidopsis thaliana OX=3702 GN=DIR21 PE=3 SV=1 && PF03018:Dirigent-like protein"]
[11,16213261,16213481,221,72,0.282867793385239,0.155861181992459,0.127006611392781,381.142312936999,"CHH","Os11g0471300","intron","Os11g0471300","Similar to OSIGBa0145N07.3 protein && - && -"]
[11,16630876,16630980,105,33,0.189902228999089,0.0461604658938448,0.143741763105244,150.22984939629,"CHH","Os11g0476333","utr3","Os11g0476333","Hypothetical gene && - && -"]
[11,16884766,16884848,83,32,0.16509581794681,0.057616623314266,0.107479194632544,158.667462768746,"CHH","11:16882808:16884808","CGI_shore"]
[11,17025201,17025380,180,66,0.223740748957659,0.116090467400869,0.10765028155679,320.15554243506,"CHH","11:17025348:17027349","CGI_shore"]
[11,17043156,17043384,229,67,0.220285993579458,0.0939237131674959,0.126362280411962,331.649820524124,"CHH","Os11g0484000","intron","Dehydratase-enolase-phosphatase, Methylthioribulose-1-phosphate dehydratase-enolase-phosphatase","Class II aldolase/adducin, N-terminal family protein && sp|Q2R483|MTBC_ORYSJ Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0484000 PE=2 SV=1 && PF00596:Class II Aldolase and Adducin N-terminal domain"]
[11,17221334,17221472,139,34,0.0771143011985436,0.0213005325035944,0.0558137686949492,156.833514942807,"CHH","11:17219947:17221948","CGI_shore"]
[11,17355331,17355446,116,43,0.0451962337232449,0.00741182085461585,0.037784412868629,205.330130584778,"CHH","11:17354526:17356526","CGI_shore"]
[11,17402710,17402895,186,48,0.23640618419878,0.149901821326515,0.0865043628722652,223.036529221936,"CHH","11:17402002:17404003","CGI_shore"]
[11,17499759,17499978,220,43,0.233238778792175,0.0464780474089489,0.186760731383226,241.850286143845,"CHH","11:17497761:17499761","CGI_shore"]
[11,17597483,17597608,126,27,0.301982946812413,0.172028063061297,0.129954883751116,127.940649972592,"CHH","11:17597140:17599141","CGI_shore"]
[11,17597483,17597608,126,27,0.301982946812413,0.172028063061297,0.129954883751116,127.940649972592,"CHH","11:17597235:17599235","CGI_shore"]
[11,17854809,17854941,133,22,0.586385232366045,0.169559657297013,0.416825575069032,141.707741486726,"CHG","11:17854210:17856210","CGI_shore"]
[11,18423007,18423147,141,39,0.122824604118957,0.0488987523751912,0.0739258517437658,190.410235904913,"CHH","11:18421245:18423246","CGI_shore"]
[11,18541781,18541856,76,25,0.0637451902298583,0.0148500945133449,0.0488950957165135,114.015166610512,"CHH","Os11g0516800","promoter","Os11g0516800","Hypothetical protein && - && -"]
[11,18550442,18550569,128,40,0.520054745911299,0.271871419939192,0.248183325972107,245.898972867073,"CG","11:18550131:18550838","CGI"]
[11,18878608,18878727,120,10,0.553148602617112,0.270411188420896,0.282737414196216,50.9400495268258,"CG","11:18877613:18879613","CGI_shore"]
[11,18943062,18943125,64,16,0.137803056060026,0.0152283950348846,0.122574661025141,93.0056595332665,"CHH","11:18941554:18943555","CGI_shore"]
[11,18945921,18945997,77,27,0.150486556539837,0.0721845456588075,0.0783020108810299,138.884290831196,"CHH","11:18944945:18946945","CGI_shore"]
[11,19083012,19083173,162,62,0.182831848493678,0.0556352175253574,0.127196630968321,250.525683332363,"CG","11:19082890:19088820","CGI"]
[11,19090580,19090641,62,17,0.202511429514577,0.0774607309662989,0.125050698548278,74.6608131489781,"CHH","11:19088820:19090821","CGI_shore"]
[11,19340214,19340346,133,36,0.076370225086345,0.0125318473270234,0.0638383777593216,177.355161666497,"CHH","11:19340242:19342243","CGI_shore"]
[11,19679950,19680106,157,32,0.459708977501944,0.161453805190107,0.298255172311837,157.623253594682,"CHH","11:19678045:19680046","CGI_shore"]
[11,19950056,19950284,229,75,0.13525413621384,0.0448652478465295,0.0903888883673104,295.641805474408,"CG","Os11g0543300","exon","Os11g0543300","Protein of unknown function DUF247, plant domain containing protein && - && PF03140:Plant protein of unknown function"]
[11,20005745,20006092,348,121,0.234502468209477,0.0885109127331945,0.145991555476283,687.484601472097,"CHH","11:20003805:20005805","CGI_shore"]
[11,20014253,20014339,87,21,0.222149877528059,0.115015133169178,0.107134744358881,94.8816047237726,"CHH","11:20013323:20015324","CGI_shore"]
[11,20025266,20025605,340,89,0.322301290955942,0.174068808667071,0.148232482288871,411.174238353812,"CHH","11:20023702:20025702","CGI_shore"]
[11,20059588,20059813,226,63,0.234887589745527,0.0711445550852874,0.16374303466024,301.370923975762,"CHH","11:20048718:20062584","CGI"]
[11,20107770,20107950,181,60,0.289164089736018,0.172012103858064,0.117151985877954,310.209541193823,"CHH","Os11g0545600","promoter","MORF-RELATED GENE702","Reader protein of trimethylated histone H3 lysine 4 (H3K4me3) and histone H3 lysine 36 (H3K36me3), Brassinosteroid-regulated growth, Flowering time contro && sp|Q94C32|MRG1_ARATH Protein MRG1 OS=Arabidopsis thaliana OX=3702 GN=MRG1 PE=1 SV=1 && -"]
[11,20126358,20126471,114,41,0.0786270709898853,0.0248243177814118,0.0538027532084734,181.887134040417,"CHH","11:20124700:20126642","CGI"]
[11,20187824,20187943,120,32,0.212827797355031,0.0747391634266581,0.138088633928373,151.790189859864,"CHH","11:20152421:20255292","CGI"]
[11,20296176,20296338,163,43,0.180133163989023,0.0613081126160581,0.118825051372964,226.927008655801,"CHH","11:20296225:20298225","CGI_shore"]
[11,20424002,20424161,160,19,0.138004393725117,0.0149262027560218,0.123078190969096,98.7319463743098,"CHH","Os11g0549695","promoter","Os11g0549695","Maf-like protein family protein && sp|Q54TC5|NTPPB_DICDI 7-methyl-GTP pyrophosphatase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0281937 PE=3 SV=1 && PF02545:Maf-like protein"]
[11,20511933,20512070,138,38,0.843132726586385,0.536520972064349,0.306611754522036,177.860355196037,"CG","11:20511675:20513675","CGI_shore"]
[11,20582067,20582210,144,66,0.335429327534264,0.224339727475576,0.111089600058688,311.452879627998,"CHH","11:20581276:20584625","CGI"]
[11,20661350,20661444,95,25,0.597375342639468,0.189303642911305,0.408071699728162,136.804102803496,"CG","11:20661138:20662357","CGI"]
[11,20893815,20893944,130,44,0.0628671818550658,0.0192780026102423,0.0435891792448236,186.018574755351,"CHH","Os11g0560900","promoter","Os11g0560900","Similar to Leucine Rich Repeat family protein && - && -"]
[11,20992910,20993101,192,55,0.276825466464397,0.125846229890454,0.150979236573944,302.879440292689,"CHH","11:20991041:20993041","CGI_shore"]
[11,21309915,21310040,126,14,0.354717289979531,0.0633141247240993,0.291403165255432,65.1509855357111,"CHG","11:21307299:21319577","CGI"]
[11,21548983,21549055,73,39,0.109387115027159,0.0628032178978405,0.0465838971293188,174.956422217313,"CHH","Os11g0573900","promoter","Os11g0573900","Hypothetical protein && - && -"]
[11,21969083,21969157,75,27,0.353255972601274,0.150500109399755,0.202755863201519,112.523359392506,"CG","Os11g0581700","exon","Os11g0581700","Similar to EPIDERMAL PATTERNING FACTOR-like protein 4 && sp|Q2V3I3|EPFL4_ARATH EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1 && PF17181:Epidermal patterning factor proteins"]
[11,22284042,22284188,147,41,0.18463871656054,0.0314754141622138,0.153163302398326,276.70638277043,"CHH","11:22283915:22285916","CGI_shore"]
[11,22301127,22301194,68,21,0.378855510404446,0.242524762740498,0.136330747663948,83.8190969452252,"CHH","Os11g0588100","promoter","QTL for seedling cold tolerance on chromosome 11","Similar to Integral membrane protein DUF6 containing protein, expressed && sp|Q9FGL0|WTR44_ARATH WAT1-related protein At5g47470 OS=Arabidopsis thaliana OX=3702 GN=At5g47470 PE=3 SV=1 && PF00892:EamA-like transporter family"]
[11,22409856,22410020,165,51,0.108564621878255,0.0548779410899244,0.0536866807883303,216.350253056789,"CHH","11:22409984:22410782","CGI"]
[11,22533548,22533605,58,17,0.139783413620459,0.0448432669688195,0.0949401466516397,85.2742862053443,"CHH","11:22531778:22533778","CGI_shore"]
[11,22650680,22650833,154,40,0.206118415364256,0.0864075960757448,0.119710819288512,209.195870649211,"CHH","Os11g0594800","promoter","Os11g0594800","Protein of unknown function DUF538 family protein && - && PF04398:Protein of unknown function, DUF538"]
[11,22885342,22885441,100,17,0.0908996243717927,0.0048970447197894,0.0860025796520033,96.6094714851433,"CHH","11:22883804:22885804","CGI_shore"]
[11,22885342,22885441,100,17,0.0908996243717927,0.0048970447197894,0.0860025796520033,96.6094714851433,"CHH","11:22885407:22887408","CGI_shore"]
[11,23166029,23166276,248,43,0.232428408273233,0.0655271454219383,0.166901262851294,277.835377669398,"CHH","11:23164957:23166957","CGI_shore"]
[11,23289302,23289507,206,49,0.33574430080231,0.192181855753952,0.143562445048358,254.852910558267,"CHH","Os11g0604600","promoter","Os11g0604600","Zinc finger, RING/FYVE/PHD-type domain containing protein && - && PF12906:RING-variant domain"]
[11,23446501,23446577,77,21,0.328931257445924,0.063019594860551,0.265911662585373,108.724828156076,"CHH","11:23446063:23448064","CGI_shore"]
[11,23758170,23758262,93,20,0.267056808724365,0.145128146785855,0.12192866193851,90.1061441419825,"CHH","11:23701742:23782248","CGI"]
[11,23917281,23917561,281,55,0.324711441785753,0.0903425887552132,0.234368853030539,394.055353391067,"CHH","Os11g0615200","promoter","GRF-interacting factor 1","SSXT family protein && sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3 OS=Arabidopsis thaliana OX=3702 GN=GIF3 PE=1 SV=1 && PF05030:SSXT protein (N-terminal region)"]
[11,24218650,24218731,82,29,0.104408493750247,0.00704407731384186,0.0973644164364052,155.797067862498,"CHH","Os11g0621200","exon","Os11g0621200","Similar to OSIGBa0117N13.1 protein && - && -"]
[11,24387334,24387394,61,7,0.218866512723414,0.105186369537675,0.11368014318574,31.3501659274806,"CHG","Os11g0623800","exon","Osh359-3, Osh359-5","Similar to NB-ARC domain containing protein && sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[11,24539024,24539148,125,38,0.101064635802241,0.0283669866479431,0.0726976491542978,182.541259036092,"CHH","11:24538468:24540468","CGI_shore"]
[11,24712815,24712891,77,27,0.115856459522849,0.0230344784504709,0.0928219810723785,125.092922292554,"CHH","11:24710608:24713368","CGI"]
[11,24733680,24733949,270,52,0.327723947835356,0.13469013619501,0.193033811640346,286.25974338811,"CG","11:24733301:24735301","CGI_shore"]
[11,24841549,24841827,279,36,0.255158475287995,0.0201177273032921,0.235040747984703,254.653841953231,"CHH","11:24839640:24841640","CGI_shore"]
[11,24898084,24898142,59,25,0.114822368834509,0.00982207389408945,0.10500029494042,120.062781975512,"CHH","11:24896611:24898611","CGI_shore"]
[11,25170938,25171184,247,75,0.632195104554488,0.33999142955593,0.292203674998558,463.500734903183,"CHH","Os11g0637300","promoter","F-box protein 629","Hypothetical conserved gene && - && PF12937:F-box-like"]
[11,25224375,25224482,108,28,0.191881453361807,0.0981150719509293,0.0937663814108776,123.144613935873,"CHH","11:25222925:25224925","CGI_shore"]
[11,25508485,25508586,102,29,0.336963307617106,0.186769837225168,0.150193470391938,154.54334069826,"CHH","Os11g0643400","promoter","SERINE CARBOXYPEPTIDASE 64","Similar to Serine carboxypeptidase family protein && sp|Q9C7Z9|SCP18_ARATH Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana OX=3702 GN=SCPL18 PE=2 SV=2 && PF00450:Serine carboxypeptidase"]
[11,25586650,25586739,90,22,0.0972624619427272,0.0133185261383729,0.0839439358043543,103.120047422507,"CHH","11:25585391:25587392","CGI_shore"]
[11,25598940,25599115,176,57,0.281670568621853,0.176621462221989,0.105049106399864,256.801036886122,"CHH","Os11g0644800","intron","Os11g0644800","Similar to Tyrosine/nicotianamine aminotransferases family protein, expressed && sp|A0A0P0VI36|NAAT1_ORYSJ Nicotianamine aminotransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NAAT1 PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[11,25897434,25897624,191,51,0.361112486708279,0.177779173234042,0.183333313474237,316.138064727416,"CHH","Os11g0649700","promoter","Os11g0649700","Uncharacterised protein family UPF0497, trans-membrane plant subgroup domain containing protein && sp|Q2R0D1|CSPLK_ORYSJ CASP-like protein 1U2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0649700 PE=2 SV=1 && PF04535:Domain of unknown function (DUF588)"]
[11,26196146,26196219,74,14,0.549848437889734,0.39796411910434,0.151884318785394,63.1894646661598,"CG","Os11g0654800","exon","Os11g0654800","Conserved hypothetical protein && sp|P0DO07|PIK2_ORYSJ Disease resistance protein Pik-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-2 PE=3 SV=1 && PF18052:Rx N-terminal domain"]
[11,26199852,26199951,100,33,0.0850966937515069,0.0104276205999131,0.0746690731515938,157.947951498901,"CHH","Os11g0654800","promoter","Os11g0654800","Conserved hypothetical protein && sp|P0DO07|PIK2_ORYSJ Disease resistance protein Pik-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-2 PE=3 SV=1 && PF18052:Rx N-terminal domain"]
[11,26329870,26329936,67,6,0.482339457780179,0.0718887189227984,0.410450738857381,29.6809949808553,"CHG","11:26329691:26330325","CGI"]
[11,26583987,26584050,64,11,0.0694360092848244,0.0312533380846233,0.0381826712002011,36.6034120894332,"CG","11:26573098:26584525","CGI"]
[11,26598143,26598265,123,48,0.0686213810544793,0.0184526395371547,0.0501687415173246,217.868205359263,"CHH","11:26596173:26598173","CGI_shore"]
[11,26956912,26957175,264,64,0.339648772719673,0.0460985452509501,0.293550227468723,540.486802074768,"CHH","Os11g0668100","intron","Os11g0668100","Similar to NB-ARC domain containing protein, expressed && sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1 && -"]
[11,27187038,27187161,124,39,0.626962433303625,0.466793798972086,0.160168634331539,192.484675131882,"CHH","11:27186009:27188010","CGI_shore"]
[11,27381248,27381443,196,61,0.148212125899295,0.0626934831405051,0.0855186427587896,345.771813112329,"CHH","11:27380990:27382990","CGI_shore"]
[11,27811569,27811645,77,18,0.185444447603388,0.0795460575984741,0.105898390004914,88.7224014730867,"CHH","Os11g0686900","intron","Os11g0686900","Similar to NB-ARC domain containing protein, expressed && sp|F7J0N2|RGA5R_ORYSJ Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[11,28014802,28014872,71,15,0.207847828882478,0.100330405225363,0.107517423657115,86.6156903681056,"CHH","11:28013652:28015652","CGI_shore"]
[11,28141642,28141699,58,21,0.146751790444513,0.0561785148076908,0.0905732756368218,104.780174870995,"CHH","Os11g0691280","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 353","EGF-type aspartate/asparagine hydroxylation site domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF07714:Protein tyrosine kinase|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[11,28293637,28293717,81,20,0.115661899091852,0.0442920698572233,0.0713698292346284,90.3612717555472,"CHH","11:28293436:28295436","CGI_shore"]
[11,28306014,28306186,173,38,0.144610230859831,0.0460297207901381,0.0985805100696926,203.549159445469,"CHH","11:28305021:28307021","CGI_shore"]
[11,28411794,28411858,65,15,0.364831293304021,0.0618749075983204,0.302956385705701,81.954041690979,"CHH","11:28409942:28411942","CGI_shore"]
[11,28504050,28504116,67,20,0.0833223744762887,0.0171506985218403,0.0661716759544485,90.9996586438894,"CHH","11:28503990:28504251","CGI"]
[11,28620317,28620367,51,16,0.117627503440913,0.0492480859155739,0.0683794175253387,70.7319368183846,"CHH","11:28620002:28622003","CGI_shore"]
[11,28681285,28681531,247,64,0.284570824393199,0.13138542674798,0.15318539764522,348.260317489081,"CHH","11:28680273:28682273","CGI_shore"]
[11,28751627,28751887,261,82,0.288077141235065,0.160292051821853,0.127785089413211,414.81451879249,"CHH","Os11g0701800","promoter","xylanase inhibitor protein, rice xylanase inhibitor","Chitinase (EC 3.2.1.14) III C10701-rice (EC 3.2.1.14) (Class III chitinase homologu && sp|Q7GCM7|XIP1_ORYSJ Xylanase inhibitor protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RIXI PE=1 SV=1 && PF00704:Glycosyl hydrolases family 18"]
[11,28844473,28844891,419,117,0.351673512270804,0.203461837643567,0.148211674627237,557.909910574476,"CHH","Os11g0704600","promoter","Os11g0704600","Similar to Beta-1,3 glucanase precursor (EC 3.2.1.39) && sp|P52409|E13B_WHEAT Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum OX=4565 GN=GLC1 PE=2 SV=1 && PF00332:Glycosyl hydrolases family 17|PF07983:X8 domain"]
[12,284014,284128,115,29,0.0657405693167563,0.0115313459236211,0.0542092233931351,151.880071616502,"CHH","12:283927:285928","CGI_shore"]
[12,579300,579370,71,19,0.470751876550782,0.123565026668346,0.347186849882436,111.111428578425,"CG","12:568331:585416","CGI"]
[12,687535,687659,125,26,0.0798850113876623,0.0144702402481487,0.0654147711395136,120.501431328418,"CHH","12:686607:688608","CGI_shore"]
[12,735416,735480,65,20,0.124107418748849,0.0431578548455156,0.0809495639033339,109.627579495652,"CHH","Os12g0115100","promoter","non-specific lipid transfer protein 1.18, lipid transfer protein 1.18, type 1 non-specific lipid transfer protein 18, nonspecific lipid transfer protein-1, lipid transfer protein a15","Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI) && sp|A2ZHF1|NLTP1_ORYSI Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=LTP PE=2 SV=1 && PF00234:Protease inhibitor/seed storage/LTP family"]
[12,899240,899365,126,38,0.226522240088846,0.0919616414313768,0.134560598657469,183.497172053369,"CHH","12:897260:899260","CGI_shore"]
[12,1003187,1003374,188,24,0.716987634603396,0.432679746236346,0.28430788836705,152.04968605346,"CG","12:1002091:1005414","CGI"]
[12,1004075,1004194,120,25,0.860994601240656,0.706668664855283,0.154325936385373,121.529279819995,"CG","12:1002091:1005414","CGI"]
[12,1043016,1043100,85,16,0.273652602535228,0.070263442245763,0.203389160289465,105.463673868309,"CHH","12:1040157:1045238","CGI"]
[12,1378455,1378517,63,9,0.363047402256268,0.186168660557026,0.176878741699242,45.5134243307604,"CG","12:1378236:1378722","CGI"]
[12,1438897,1439031,135,24,0.214412998938352,0.0134965717138574,0.200916427224495,138.152887825803,"CHH","12:1437833:1439834","CGI_shore"]
[12,1446297,1446469,173,45,0.251662657354132,0.0812009790352876,0.170461678318845,249.209778461803,"CG","Os12g0129650","promoter","Os12g0129650","Similar to cDNA, clone: J065154E06, full insert sequence && sp|Q8GWR1|AAAS_ARATH Aladin OS=Arabidopsis thaliana OX=3702 GN=AAAS PE=1 SV=1 && -"]
[12,1735969,1736076,108,43,0.283209523238134,0.0714453847847528,0.211764138453381,280.927542653182,"CHH","12:1696042:1747178","CGI"]
[12,1781211,1781268,58,10,0.540142275057066,0.29064909581884,0.249493179238226,52.5891870928577,"CHG","12:1779711:1781712","CGI_shore"]
[12,1836199,1836621,423,71,0.272578044334018,0.0595586045661587,0.213019439767859,517.439068615491,"CHH","12:1836050:1838050","CGI_shore"]
[12,1902823,1903003,181,54,0.157441863706515,0.0494214468810901,0.108020416825425,316.068519577293,"CHH","12:1902976:1904976","CGI_shore"]
[12,1967864,1968121,258,91,0.40398250006281,0.256536563554603,0.147445936508208,486.484353674217,"CHH","Os12g0140550","promoter","Os12g0140550","Hypothetical gene && sp|Q94EC4|MST8_ORYSJ Sugar transport protein MST8 OS=Oryza sativa subsp. japonica OX=39947 GN=MST8 PE=2 SV=2 && PF00083:Sugar (and other) transporter"]
[12,2000621,2000756,136,41,0.373076931849705,0.213383273916745,0.15969365793296,247.009134296404,"CHH","12:1999671:2001671","CGI_shore"]
[12,2006825,2006889,65,23,0.117668320422511,0.0794783648582241,0.0381899555642871,108.387687779196,"CHH","12:2006281:2008282","CGI_shore"]
[12,2047160,2047279,120,41,0.114908910242044,0.0420141710718456,0.0728947391701988,195.665849657455,"CHH","12:2046540:2084775","CGI"]
[12,2178042,2178102,61,18,0.136668214387251,0.0247594557500412,0.11190875863721,114.430721248595,"CHH","12:2177323:2179324","CGI_shore"]
[12,2387384,2387452,69,23,0.133135016354415,0.0376690522018259,0.0954659641525887,99.7989816419642,"CHH","12:2387182:2389183","CGI_shore"]
[12,2807469,2807646,178,43,0.210268443457739,0.0677596316441416,0.142508811813598,246.947645116241,"CHH","12:2806732:2808732","CGI_shore"]
[12,3055627,3055722,96,24,0.110960389843768,0.0294981064206722,0.0814622834230954,114.633341428823,"CHH","12:3054422:3056423","CGI_shore"]
[12,3123765,3123949,185,62,0.0968271047936207,0.0296785494288813,0.0671485553647395,314.327399680579,"CHH","Os12g0161900","intron","Os12g0161900","Hypothetical conserved gene && - && -"]
[12,3393363,3393446,84,16,0.0992615763640847,0.00535048858628894,0.0939110877777958,108.473033753005,"CHH","12:3393204:3395204","CGI_shore"]
[12,3904641,3904705,65,19,0.216029972749255,0.124417251406939,0.0916127213423156,117.738717974873,"CHH","12:3904339:3906340","CGI_shore"]
[12,3979314,3979495,182,61,0.111308860307882,0.0323786885688511,0.0789301717390307,315.066388190802,"CHH","Os12g0178600","promoter","Os12g0178600","Similar to dehydration-responsive protein-related && sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana OX=3702 GN=At3g51070 PE=3 SV=1 && -"]
[12,4044013,4044183,171,49,0.347782949907398,0.222208455002679,0.12557449490472,234.513308706181,"CHH","Os12g0180100","promoter","PHOSPHATE TRANSPORTER 26","Major facilitator superfamily protein && sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica OX=39947 GN=PHT4;7 PE=2 SV=1 && PF07690:Major Facilitator Superfamily"]
[12,4087064,4087246,183,46,0.171083175318089,0.0480497510467331,0.123033424271356,284.259625471548,"CHH","12:4086711:4093048","CGI"]
[12,4210135,4210213,79,23,0.113133563519145,0.0400311491734836,0.0731024143456616,123.392170931677,"CHH","12:4209643:4211644","CGI_shore"]
[12,4521731,4521786,56,28,0.0500021088165947,0.00988591824843073,0.040116190568164,137.475754546303,"CHH","12:4520496:4522496","CGI_shore"]
[12,4865732,4865920,189,71,0.0959980836437674,0.0110729120429898,0.0849251716007776,409.802787307702,"CHH","Os12g0194800","intron","Os12g0194800","tRNA pseudouridine synthase family protein && sp|B6IPI0|TRUA_RHOCS tRNA pseudouridine synthase A OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=truA PE=3 SV=1 && PF01416:tRNA pseudouridine synthase"]
[12,4865732,4865920,189,71,0.0959980836437674,0.0110729120429898,0.0849251716007776,409.802787307702,"CHH","12:4864274:4866274","CGI_shore"]
[12,5101279,5101385,107,11,0.66531542572623,0.312423507111963,0.352891918614267,61.1139515409816,"CG","12:5100906:5102906","CGI_shore"]
[12,5301216,5301276,61,24,0.101348341900067,0.0399501589328622,0.061398182967205,104.32157649984,"CHH","12:5299846:5301847","CGI_shore"]
[12,5373143,5373202,60,24,0.260081357283242,0.107415696825035,0.152665660458207,118.450133519389,"CHH","12:5372965:5374966","CGI_shore"]
[12,5407072,5407324,253,73,0.195359774353773,0.0948267386025064,0.100533035751266,351.460507309697,"CHH","12:5405940:5407940","CGI_shore"]
[12,5436997,5437207,211,64,0.232041602987203,0.0846751401811501,0.147366462806053,400.956931388537,"CHH","12:5436993:5438994","CGI_shore"]
[12,5480220,5480346,127,30,0.166227245525302,0.0514624495426975,0.114764795982605,152.346940740349,"CHH","12:5480193:5482193","CGI_shore"]
[12,5725937,5726068,132,45,0.167498801792009,0.0814143220174774,0.0860844797745318,203.594436159348,"CHH","12:5725979:5727979","CGI_shore"]
[12,5848096,5848219,124,48,0.0982518594698782,0.0362518161235197,0.0620000433463585,228.583444724389,"CHH","12:5847614:5848205","CGI"]
[12,5894242,5894302,61,15,0.35737688587498,0.235199959484127,0.122176926390853,75.1053477275186,"CHH","12:5893325:5895326","CGI_shore"]
[12,6453906,6454006,101,33,0.116464602325766,0.0356323318471649,0.0808322704786011,171.474524950476,"CHH","12:6452405:6454405","CGI_shore"]
[12,6499687,6499738,52,24,0.0723325262867832,0.0249438533807739,0.0473886729060092,100.872578292591,"CHH","12:6498698:6499984","CGI"]
[12,6601710,6601835,126,43,0.181130022932468,0.0992429860261038,0.0818870369063645,210.409793240625,"CHH","12:6600692:6602693","CGI_shore"]
[12,6638514,6638735,222,83,0.184305800285876,0.0231436999162717,0.161162100369605,562.800095389955,"CHH","12:6619976:6639070","CGI"]
[12,6646343,6646545,203,41,0.241917348691832,0.108440301043014,0.133477047648818,221.539350617379,"CHH","12:6645448:6647448","CGI_shore"]
[12,6885380,6885529,150,54,0.231320483541529,0.128940466120248,0.102380017421281,274.635539902607,"CHH","12:6884264:6886264","CGI_shore"]
[12,6968191,6968245,55,24,0.269813326549831,0.147200718643065,0.122612607906766,105.878844081331,"CHH","Os12g0228300","intron","Os12g0228300","Conserved hypothetical protein && - && -"]
[12,6972188,6972410,223,37,0.252193100490842,0.0699800165204866,0.182213083970356,196.056173239462,"CHH","Os12g0228300","exon","Os12g0228300","Conserved hypothetical protein && - && -"]
[12,7015545,7015652,108,40,0.734851877857129,0.558313294472832,0.176538583384297,219.479436295998,"CG","12:7014850:7016851","CGI_shore"]
[12,7030333,7030467,135,44,0.597722550876553,0.454886587805556,0.142835963070997,236.0924963199,"CG","Os12g0229100","utr5","Os12g0229100","Hypothetical conserved gene && - && -"]
[12,7106924,7107204,281,73,0.245708757480108,0.0840146173109106,0.161694140169198,465.204045695233,"CHH","12:7105099:7107099","CGI_shore"]
[12,7135536,7135707,172,40,0.128117629468909,0.0239428919715977,0.104174737497312,213.871971551852,"CHH","12:7134390:7136390","CGI_shore"]
[12,7160597,7160764,168,63,0.154683255505147,0.0600997854443529,0.0945834700607942,337.255744050263,"CHH","12:7160411:7160849","CGI"]
[12,7266842,7266915,74,23,0.0844667585775755,0.00714164695553385,0.0773251116220416,103.620239529431,"CHH","12:7261377:7267087","CGI"]
[12,7747929,7748191,263,57,0.312222111347849,0.178032573981554,0.134189537366295,291.214931463043,"CHH","12:7746713:7748713","CGI_shore"]
[12,7753484,7753680,197,72,0.12736141586853,0.0467313573589766,0.0806300585095532,344.521023982249,"CHH","12:7753659:7754947","CGI"]
[12,7901173,7901359,187,65,0.465974497989934,0.320319557426011,0.145654940563923,327.928656580723,"CHH","12:7899663:7901663","CGI_shore"]
[12,8038948,8039286,339,77,0.359353091568757,0.228575005025725,0.130778086543032,394.348997081151,"CHH","12:8037287:8039287","CGI_shore"]
[12,8323977,8324147,171,32,0.199039329784176,0.0494368590317709,0.149602470752405,150.449300692669,"CHH","12:8323801:8325802","CGI_shore"]
[12,8420020,8420195,176,40,0.183457689662951,0.0583091980068392,0.125148491656111,281.154098974972,"CHH","12:8419028:8421028","CGI_shore"]
[12,8505554,8505766,213,79,0.288936420431809,0.159523345117889,0.129413075313921,451.34364165747,"CHH","12:8503695:8505695","CGI_shore"]
[12,8680190,8680425,236,54,0.202204684139237,0.0958859296710058,0.106318754468231,261.554322030096,"CHH","12:8678751:8680752","CGI_shore"]
[12,8700720,8700843,124,43,0.113193329028424,0.0460694385298698,0.0671238904985539,207.017253695578,"CHH","12:8700235:8702235","CGI_shore"]
[12,8712883,8713105,223,58,0.404163296158151,0.217062256601409,0.187101039556742,348.83309381275,"CHH","12:8712632:8714632","CGI_shore"]
[12,8804656,8804873,218,71,0.135765475687166,0.0538961525997651,0.0818693230874007,371.307553411836,"CHH","Os12g0256400","exon","Os12g0256400","Conserved hypothetical protein && - && -"]
[12,8854265,8854390,126,28,0.168350071465437,0.0635693028186961,0.104780768646741,142.862910856787,"CHH","12:8854294:8856294","CGI_shore"]
[12,8854977,8855082,106,21,0.220429282782873,0.0468060057447572,0.173623277038116,106.412823251259,"CHH","12:8854294:8856294","CGI_shore"]
[12,9270947,9271041,95,29,0.257730294157313,0.0844876500475775,0.173242644109735,160.090697250345,"CHH","Os12g0263050","promoter","Os12g0263050","Similar to Glutathione synthase && - && -"]
[12,9316651,9316865,215,53,0.371790057853017,0.205001142654527,0.16678891519849,282.429655356863,"CHH","Os12g0263800","intron","Os12g0263800","Similar to cDNA clone:J013002B21, full insert sequence && sp|P52581|IFRH_LUPAL Isoflavone reductase homolog OS=Lupinus albus OX=3870 PE=2 SV=1 && -"]
[12,9351195,9351360,166,21,0.463689001663804,0.236523839777323,0.227165161886481,103.979504292133,"CHG","12:9350577:9352577","CGI_shore"]
[12,9360010,9360151,142,37,0.393322670524578,0.209771013827399,0.183551656697179,194.003429440829,"CHH","Os12g0264500","promoter","Os12g0264500","Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase) && sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=CHY1 PE=1 SV=1 && PF16113:Enoyl-CoA hydratase/isomerase"]
[12,9363200,9363309,110,45,0.13711768453807,0.0617591804126988,0.0753585041253711,207.04746090842,"CHH","Os12g0264500","exon","Os12g0264500","Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase) && sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=CHY1 PE=1 SV=1 && PF16113:Enoyl-CoA hydratase/isomerase"]
[12,9489889,9489942,54,20,0.0423606973444342,0.0135240301132772,0.028836667231157,109.508325424333,"CHH","12:9488577:9490577","CGI_shore"]
[12,10056929,10057138,210,61,0.225544910006284,0.0923087385316964,0.133236171474587,362.397209972452,"CHH","12:10055654:10057654","CGI_shore"]
[12,10067868,10067963,96,30,0.069975348838965,0.0274956888449148,0.0424796599940502,112.043904515951,"CHH","12:10065913:10072111","CGI"]
[12,10111607,10111692,86,28,0.0937249153421802,0.0329237873813541,0.0608011279608262,131.288344911416,"CHH","12:10111412:10111768","CGI"]
[12,10202760,10202824,65,15,0.0445826123733575,0.00835181857290938,0.0362307938004481,108.018942687353,"CHH","12:10202773:10204774","CGI_shore"]
[12,10288375,10288635,261,52,0.557331945366915,0.30703090966742,0.250301035699496,328.666358621014,"CHH","12:10286690:10288691","CGI_shore"]
[12,10629192,10629326,135,46,0.0963282254146575,0.0407080931515976,0.0556201322630599,208.236596905895,"CHH","12:10628936:10630936","CGI_shore"]
[12,10685944,10686001,58,23,0.0509084098993217,0.0116887761333227,0.039219633765999,112.671004778202,"CHH","12:10683994:10685995","CGI_shore"]
[12,10743744,10743898,155,41,0.207372076014147,0.101619592686124,0.105752483328023,191.944382888748,"CHH","12:10743272:10745273","CGI_shore"]
[12,10953102,10953215,114,41,0.14886521456765,0.0610272601422161,0.0878379544254335,189.536529731992,"CHH","12:10951921:10953921","CGI_shore"]
[12,10957516,10957616,101,21,0.0813621146593243,0.0088719753861499,0.0724901392731744,91.3571455555865,"CHH","12:10956623:10958623","CGI_shore"]
[12,10957516,10957616,101,21,0.0813621146593243,0.0088719753861499,0.0724901392731744,91.3571455555865,"CHH","12:10957573:10959574","CGI_shore"]
[12,11176917,11177137,221,60,0.175233912224314,0.0840014877569802,0.0912324244673343,277.078647000265,"CHH","Os12g0289833","utr3","Os12g0289833","Hypothetical gene && - && -"]
[12,11202550,11202630,81,28,0.105643139649394,0.0356086007429618,0.0700345389064322,137.384256378514,"CHH","Os12g0290150","intron","Os12g0290150","Similar to QS (QUINOLINATE SYNTHASE); 4 iron, 4 sulfur cluster binding / enzyme activator/ protein homodimerization/ quinolinate synthetase A && sp|Q2QTL0|NADA_ORYSJ Quinolinate synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0290150 PE=3 SV=2 && PF02657:Fe-S metabolism associated domain|PF02445:Quinolinate synthetase A protein"]
[12,11202769,11202869,101,34,0.156942375671179,0.0770245697189229,0.0799178059522556,160.347396205838,"CHH","Os12g0290200","promoter","Os12g0290200","Hypothetical protein && - && -"]
[12,11275012,11275250,239,75,0.146620161197883,0.0411692088548957,0.105450952342987,396.732958937825,"CHH","Os12g0291400","promoter","RuBisCO small subunit 5, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5","Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment) && sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small subunit, chloroplastic 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RBCS1 PE=2 SV=2 && PF12338:Ribulose-1,5-bisphosphate carboxylase small subunit|PF00101:Ribulose bisphosphate carboxylase, small chain"]
[12,11390669,11390852,184,58,0.102345449264305,0.0585053092065031,0.0438401400578019,245.022050462845,"CHH","12:11389003:11391003","CGI_shore"]
[12,11429049,11429135,87,21,0.172478371064369,0.0728825815150358,0.0995957895493332,100.509553735112,"CHH","Os12g0294100","utr3","OsWD40-197","WD40 repeat-like domain containing protein && sp|Q944S2|GTS1_ARATH WD repeat-containing protein GTS1 OS=Arabidopsis thaliana OX=3702 GN=GTS1 PE=2 SV=1 && -"]
[12,11433083,11433294,212,45,0.156839326939013,0.0501864457460326,0.106652881192981,263.297234961007,"CHH","12:11432278:11434279","CGI_shore"]
[12,11747502,11747644,143,51,0.113322526549656,0.0450347115596758,0.0682878149899803,239.207812709925,"CHH","12:11746688:11748688","CGI_shore"]
[12,11861604,11861658,55,16,0.178845456377165,0.099414150555448,0.0794313058217166,73.6266287796835,"CHH","Os12g0298600","promoter","Os12g0298600","Histone H4 acetyltransferase, NuA4 complex, Eaf6 domain containing protein && sp|Q58CU0|EAF6_BOVIN Chromatin modification-related protein MEAF6 OS=Bos taurus OX=9913 GN=MEAF6 PE=2 SV=2 && PF09340:Histone acetyltransferase subunit NuA4"]
[12,11887830,11887961,132,34,0.134142351635028,0.0511975228537501,0.0829448287812784,165.100098424348,"CHH","12:11886934:11888935","CGI_shore"]
[12,11951167,11951380,214,57,0.113094504910402,0.0225639522925286,0.0905305526178738,304.521534155101,"CHH","12:11948244:11957885","CGI"]
[12,12831702,12831768,67,19,0.1986412933102,0.0518504240553258,0.146790869254874,109.015847802259,"CHH","12:12831730:12833730","CGI_shore"]
[12,13067309,13067385,77,25,0.0935027516605315,0.0613455008615273,0.0321572507990042,107.322669326216,"CHH","12:13062362:13089814","CGI"]
[12,13678550,13678681,132,52,0.165454225770789,0.0531091525422611,0.112345073228528,256.921271062745,"CHH","12:13677979:13679227","CGI"]
[12,13791495,13791648,154,43,0.10717614900673,0.05653850716749,0.05063764183924,150.227477995352,"CHH","12:13790687:13814118","CGI"]
[12,13916290,13916520,231,67,0.0896354838637531,0.0373725677790823,0.0522629160846709,311.66012309561,"CHH","Os12g0431850","promoter","Os12g0431850","Hypothetical protein && sp|Q9ZQ46|WAVH1_ARATH E3 ubiquitin-protein ligase WAVH1 OS=Arabidopsis thaliana OX=3702 GN=WAVH1 PE=1 SV=1 && -"]
[12,13979187,13979680,494,78,0.576851089794175,0.459954367567421,0.116896722226754,125.57331657391,"CG","12:13978872:13979865","CGI"]
[12,14433643,14433737,95,20,0.182029291467056,0.0490884317703014,0.132940859696755,87.144833878229,"CG","Os12g0438100","exon","Os12g0438100","Conserved hypothetical protein && - && -"]
[12,14832047,14832252,206,73,0.29464808962207,0.154116547227904,0.140531542394166,441.712487198465,"CHH","12:14831881:14833881","CGI_shore"]
[12,15064311,15064373,63,25,0.129372709123873,0.00913187063586332,0.12024083848801,140.603690198716,"CHH","12:15062568:15064569","CGI_shore"]
[12,15132143,15132370,228,92,0.3321065781989,0.134878776067513,0.197227802131387,489.79643680192,"CHH","Os12g0446900","intron","Os12g0446900","Similar to bifunctional dihydrofolate reductase-thymidylate synthase && sp|Q2QRX6|DRTS_ORYSJ Putative bifunctional dihydrofolate reductase-thymidylate synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0446900 PE=3 SV=2 && PF00303:Thymidylate synthase|PF00186:Dihydrofolate reductase"]
[12,15267350,15267484,135,37,0.0481035300062639,0.0154369594933498,0.0326665705129141,166.185098934072,"CHH","12:15266715:15268716","CGI_shore"]
[12,15347924,15348013,90,25,0.072131372742758,0.0236602725899722,0.0484711001527858,126.369085316009,"CHH","12:15347831:15349161","CGI"]
[12,15479506,15479777,272,96,0.0962029866728491,0.0384787343082221,0.0577242523646269,464.182797044255,"CHH","12:15478311:15480311","CGI_shore"]
[12,15613635,15613748,114,37,0.0653530764259426,0.02192181452982,0.0434312618961226,146.894911511536,"CHH","12:15612277:15614278","CGI_shore"]
[12,15813614,15813664,51,13,0.267013799274931,0.0802415227829009,0.18677227649203,93.5820103419662,"CHH","12:15812376:15814377","CGI_shore"]
[12,16035215,16035287,73,13,0.256738225612566,0.103173798609036,0.15356442700353,62.0252267321317,"CHG","12:16033304:16035304","CGI_shore"]
[12,16349598,16349796,199,56,0.129842113632017,0.0402525901383575,0.0895895234936599,277.557019431579,"CHH","12:16349140:16351141","CGI_shore"]
[12,16491334,16491508,175,56,0.0955387364712484,0.0200841914401681,0.0754545450310803,272.280018155348,"CHH","12:16488019:16491956","CGI"]
[12,16928132,16928208,77,13,0.600044775778892,0.338951250520614,0.261093525258277,60.8487990462834,"CG","12:16923117:16955091","CGI"]
[12,17423943,17424022,80,35,0.46878843785073,0.306027064285206,0.162761373565524,166.594592517063,"CHH","12:17423358:17425358","CGI_shore"]
[12,17673749,17673812,64,29,0.103830097696152,0.0338546945261477,0.0699754031700039,129.657059013855,"CHH","12:17672295:17674295","CGI_shore"]
[12,17909537,17909781,245,68,0.435152243733576,0.284845196568294,0.150307047165282,344.487844561601,"CHH","Os12g0484700","promoter","Os12g0484700","Similar to Yippee-like protein CG15309 && sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana OX=3702 GN=At4g27745 PE=3 SV=2 && PF03226:Yippee zinc-binding/DNA-binding /Mis18, centromere assembly"]
[12,18353689,18353824,136,35,0.684242291927228,0.391462993033606,0.292779298893622,200.687090361779,"CG","12:18353400:18354296","CGI"]
[12,18420029,18420101,73,8,0.791461947830077,0.578294315481159,0.213167632348918,38.8188655150832,"CHG","12:18416425:18435470","CGI"]
[12,18919195,18919469,275,72,0.280570216988645,0.144400141946324,0.136170075042321,404.867299002357,"CHH","12:18918279:18920279","CGI_shore"]
[12,19445212,19445393,182,50,0.407941882060063,0.16723432312134,0.240707558938723,254.277615484024,"CHH","12:19444248:19446248","CGI_shore"]
[12,19445212,19445393,182,50,0.407941882060063,0.16723432312134,0.240707558938723,254.277615484024,"CHH","12:19444618:19445582","CGI"]
[12,19564223,19564353,131,45,0.284717236240021,0.121233133274583,0.163484102965438,215.883641257276,"CHH","12:19562838:19564838","CGI_shore"]
[12,19999931,20000038,108,50,0.209627410904751,0.0283955805208894,0.181231830383862,261.766898556363,"CHH","12:19999984:20001985","CGI_shore"]
[12,20006583,20006726,144,55,0.218475675522681,0.109814470474647,0.108661205048033,268.511143086857,"CHH","12:20006437:20008438","CGI_shore"]
[12,20070907,20070980,74,12,0.155366155007252,0.012537148594727,0.142829006412525,88.1401611227104,"CHH","12:20070779:20072780","CGI_shore"]
[12,20846567,20846720,154,17,0.544850242845463,0.219586788508529,0.325263454336934,97.203046544181,"CHG","Os12g0528801","TSS","Os12g0528801","Hypothetical gene && - && -"]
[12,20846567,20846720,154,17,0.544850242845463,0.219586788508529,0.325263454336934,97.203046544181,"CHG","Os12g0528801","promoter","Os12g0528801","Hypothetical gene && - && -"]
[12,21540409,21540524,116,44,0.17429881114597,0.0235440839391326,0.150754727206837,253.317065751371,"CHH","12:21538519:21540519","CGI_shore"]
[12,21904277,21904332,56,18,0.170189514140104,0.111668083358586,0.0585214307815186,118.815850549024,"CHH","12:21903988:21905989","CGI_shore"]
[12,22016141,22016316,176,41,0.208069208029186,0.0585377063679948,0.149531501661192,224.946718883695,"CHH","12:22016087:22018088","CGI_shore"]
[12,22347897,22348077,181,49,0.133059914278733,0.0294039048440376,0.103656009434695,254.210781551854,"CHH","12:22347964:22349965","CGI_shore"]
[12,22347897,22348077,181,49,0.133059914278733,0.0294039048440376,0.103656009434695,254.210781551854,"CHH","12:22347725:22347964","CGI"]
[12,23059775,23059831,57,17,0.131831967212597,0.0200701229414587,0.111761844271138,76.8610407941841,"CHH","12:23059169:23061169","CGI_shore"]
[12,23343194,23343381,188,44,0.443105490179882,0.177832038185384,0.265273451994497,233.136503210075,"CG","Os12g0567500","intron","Os12g0567500","Protein kinase, catalytic domain domain containing protein && sp|C0LGR6|Y4291_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana OX=3702 GN=At4g29180 PE=1 SV=2 && PF13855:Leucine rich repeat|PF12819:Malectin-like domain|PF07714:Protein tyrosine kinase"]
[12,23973199,23973339,141,46,0.542866588428085,0.416683395446287,0.126183192981798,222.870663391103,"CHH","12:23972089:23974090","CGI_shore"]
[12,23983200,23983254,55,18,0.242646980347328,0.0926377797539933,0.150009200593335,95.6296029076327,"CHH","12:23983182:23985182","CGI_shore"]
[12,25389094,25389301,208,53,0.214981311586977,0.0697045247844973,0.14527678680248,258.015178945935,"CHH","12:25388980:25390981","CGI_shore"]
[12,25532834,25532929,96,6,0.513261909655875,0.0459265513190057,0.467335358336869,37.54483357541,"CHG","12:25532319:25537633","CGI"]
[12,25695628,25695877,250,79,0.719251771706133,0.56626426809651,0.152987503609623,402.142464354897,"CG","12:25687743:25701859","CGI"]
[12,25965310,25965382,73,19,0.156578618121144,0.0550473123249559,0.101531305796188,88.3550484536816,"CHH","Os12g0613100","promoter","cationic amino acid transporter 10","Similar to Amino acid permease family protein && sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1 && -"]
[12,26090891,26090961,71,24,0.240382890577334,0.120503329194462,0.119879561382871,103.889581805803,"CHH","Os12g0615150","promoter","Os12g0615150","Hypothetical protein && sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 && -"]
[12,26346250,26346322,73,22,0.190019983641132,0.0969105870630607,0.0931093965780717,97.5162367299689,"CHH","12:26346036:26348037","CGI_shore"]
[12,26655565,26655750,186,47,0.254312239971255,0.09846111016174,0.155851129809515,249.889930742693,"CHH","12:26655296:26657296","CGI_shore"]
[12,26899248,26899340,93,19,0.223618091509441,0.0491074074878561,0.174510684021585,117.046857193044,"CHH","12:26899106:26900337","CGI"]
[12,27030391,27030468,78,17,0.428831282933237,0.218326463844,0.210504819089237,88.7550441793797,"CHH","Os12g0631200","promoter","Os12g0631200","Zinc finger, C6HC-type domain containing protein && - && -"]
[12,27079665,27079802,138,34,0.17789306478104,0.0839652537037052,0.0939278110773344,138.123193266114,"CHH","12:27078347:27079720","CGI"]
[2,85395,85506,112,31,0.250862293337398,0.0431266797467861,0.207735613590611,139.806384992736,"CHH","2:85364:85709","CGI"]
[2,424933,425003,71,21,0.211071674092455,0.0966255299027416,0.114446144189713,100.58933944811,"CHH","Os02g0107251","TES","Os02g0107251","Conserved hypothetical protein && - && -"]
[2,425362,425646,285,91,0.355852289548217,0.131296269998655,0.224556019549562,709.133846227403,"CG","Os02g0107300","utr5","Os02g0107300","Conserved hypothetical protein && - && -"]
[2,425421,425681,261,79,0.140264295291353,0.0153665652029505,0.124897730088403,566.902445444435,"CHH","Os02g0107251","exon","Os02g0107251","Conserved hypothetical protein && - && -"]
[2,428697,428847,151,32,0.347856993118438,0.19066920002326,0.157187793095178,147.922124922364,"CHH","2:426757:428758","CGI_shore"]
[2,450483,450787,305,97,0.54714413374787,0.317108987592189,0.23003514615568,762.577990396326,"CHH","2:449975:451976","CGI_shore"]
[2,707998,708054,57,15,0.317627850426482,0.15934460929775,0.158283241128733,68.511936626632,"CHH","2:706632:708633","CGI_shore"]
[2,843365,843438,74,22,0.273273845554095,0.149114509598889,0.124159335955205,118.210883622403,"CHH","2:842941:844942","CGI_shore"]
[2,1431348,1431555,208,51,0.170085780447471,0.0469269454480007,0.12315883499947,293.51253347483,"CHH","Os02g0127600","promoter","Os02g0127600","Pentatricopeptide repeat domain containing protein && sp|Q8GZA6|PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g71210 PE=1 SV=1 && PF13041:PPR repeat family"]
[2,1636896,1636983,88,14,0.188250161031267,0.0170860673269981,0.171164093704269,118.687219839345,"CHH","Os02g0131300","promoter","mitochondrial ATP synthase precursor 1","Similar to Mitochondrial ATP synthase && sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21870 PE=1 SV=1 && PF15704:Mitochondrial ATP synthase subunit"]
[2,1766889,1767045,157,50,0.184652476546712,0.0974409785904441,0.0872114979562681,239.512294659342,"CHH","Os02g0133400","intron","SMC3 homolog, chromosome segregation protein sudA","Similar to SMC3 protein && sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana OX=3702 GN=SMC3 PE=2 SV=1 && -"]
[2,2150469,2150622,154,20,0.151740002107426,0.0250660128818161,0.12667398922561,91.8938534278472,"CHH","Os02g0140200","intron","oxidosqualene cyclase 3","Similar to cycloartenol synthase && sp|Q2R712|ACBSY_ORYSJ Achilleol B synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0285000 PE=1 SV=1 && PF13243:Squalene-hopene cyclase C-terminal domain"]
[2,2279354,2279544,191,71,0.099918986105149,0.0350547833777095,0.0648642027274396,335.146987225714,"CHH","Os02g0142100","exon","Os02g0142100","Similar to H0102C09.1 protein && sp|Q9ZT94|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 && -"]
[2,2509909,2509970,62,22,0.148340329267316,0.0753582234987285,0.0729821057685877,114.61264124023,"CHH","2:2509125:2511125","CGI_shore"]
[2,2994154,2994348,195,62,0.097886630013166,0.0246011416290711,0.0732854883840949,287.130737313986,"CHH","2:2993177:2995177","CGI_shore"]
[2,2994154,2994348,195,62,0.097886630013166,0.0246011416290711,0.0732854883840949,287.130737313986,"CHH","Os02g0154600","promoter","Os02g0154600","Domain of unknown function DUF250 domain containing protein && sp|Q9S845|GONS3_ARATH GDP-mannose transporter GONST3 OS=Arabidopsis thaliana OX=3702 GN=GONST3 PE=2 SV=1 && -"]
[2,3208373,3208426,54,22,0.451527350762705,0.365923799200588,0.0856035515621168,94.9487324982406,"CHH","2:3203977:3208682","CGI"]
[2,3778167,3778225,59,12,0.245380951554596,0.0774773027056196,0.167903648848976,62.5813543749468,"CG","2:3778048:3778321","CGI"]
[2,3778167,3778225,59,12,0.245380951554596,0.0774773027056196,0.167903648848976,62.5813543749468,"CG","Os02g0169800","exon","Os02g0169800","Armadillo-like helical domain containing protein && sp|Q8L5Y6|CAND1_ARATH Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana OX=3702 GN=CAND1 PE=1 SV=1 && -"]
[2,4014582,4014640,59,20,0.323107065513046,0.159063698697162,0.164043366815884,110.017058547835,"CHH","Os02g0173300","exon","Os02g0173300","Conserved hypothetical protein && - && -"]
[2,4294225,4294519,295,102,0.0450109103493842,0.00953567541749903,0.0354752349318851,462.426767653254,"CHH","Os02g0177800","intron","Os02g0177800","Similar to calmodulin binding protein && sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B OS=Arabidopsis thaliana OX=3702 GN=CBP60B PE=2 SV=1 && PF07887:Calmodulin binding protein-like"]
[2,4388900,4389017,118,23,0.169165982767201,0.0490609248755922,0.120105057891609,124.547409757538,"CHH","Os02g0179225","promoter","Os02g0179225","Hypothetical protein && sp|Q9M0A5|GGP3_ARATH Gamma-glutamyl peptidase 3 OS=Arabidopsis thaliana OX=3702 GN=GGP3 PE=1 SV=1 && -"]
[2,4538556,4538751,196,40,0.522308425394632,0.325188864027875,0.197119561366757,230.929555849179,"CHH","2:4536872:4538872","CGI_shore"]
[2,4755775,4755974,200,67,0.188674565133384,0.111138051983412,0.0775365131499722,326.620175685681,"CHH","2:4755018:4757019","CGI_shore"]
[2,4879471,4879548,78,31,0.147781551118981,0.0706475562029919,0.0771339949159887,141.581918133556,"CHH","2:4879312:4881313","CGI_shore"]
[2,5198447,5198609,163,54,0.158198783588145,0.0703352580535196,0.0878635255346249,270.044130359331,"CHH","2:5196896:5198897","CGI_shore"]
[2,5403997,5404091,95,19,0.143787720747723,0.0359123524890232,0.1078753682587,112.371045933789,"CHH","2:5402475:5404475","CGI_shore"]
[2,5403997,5404091,95,19,0.143787720747723,0.0359123524890232,0.1078753682587,112.371045933789,"CHH","Os02g0196600","promoter","HEAVY METAL ATPASE 4","Heavy metal P1B-type ATPase, Cu-transporting ATPase, Control of Cu accumulation in rice grai && sp|Q6H7M3|HMA4_ORYSJ Copper-transporting ATPase HMA4 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA4 PE=1 SV=1 && PF00403:Heavy-metal-associated domain|PF00122:E1-E2 ATPase|PF00702:haloacid dehalogenase-like hydrolase"]
[2,5632690,5632822,133,24,0.130082534350775,0.0265241806248323,0.103558353725943,152.079815601079,"CHH","2:5632321:5634322","CGI_shore"]
[2,5753148,5753258,111,19,0.0557857631973406,0.00225835302173262,0.0535274101756079,112.795377133923,"CHH","Os02g0202800","exon","Os02g0202800","FAR1 domain containing protein && sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1 && PF10551:MULE transposase domain|PF03101:FAR1 DNA-binding domain"]
[2,5768754,5768823,70,23,0.163867837225385,0.0784353395746731,0.0854324976507121,105.57847428917,"CHH","2:5768806:5770807","CGI_shore"]
[2,5784193,5784460,268,64,0.419344134848868,0.176765881999418,0.242578252849451,442.843030791092,"CHH","Os02g0203401","promoter","Os02g0203401","Hypothetical gene && - && -"]
[2,5981016,5981213,198,33,0.230622607063181,0.0786513534105493,0.151971253652631,173.843495599094,"CHH","Os02g0206700","promoter","Os02g0206700","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q6VAA9|U73E1_STERE UDP-glycosyltransferase 73E1 OS=Stevia rebaudiana OX=55670 GN=UGT73E1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[2,6037613,6037945,333,58,0.401026584207737,0.160810596059328,0.240215988148409,400.303014871315,"CHH","2:6036407:6038407","CGI_shore"]
[2,6167352,6167413,62,19,0.0716970988108521,0.0270079057946548,0.0446891930161973,109.322280019214,"CHH","Os02g0210100","utr3","Os02g0210100","Conserved hypothetical protein && - && -"]
[2,6317647,6317717,71,23,0.26549922836571,0.107258853369153,0.158240374996557,125.798638081014,"CHH","2:6315980:6317980","CGI_shore"]
[2,6386256,6386499,244,44,0.429926092071716,0.0553621044197126,0.374563987652004,343.134673252767,"CHH","2:6386098:6388099","CGI_shore"]
[2,6515693,6515873,181,51,0.315586344126845,0.170414533288041,0.145171810838803,268.820448254977,"CHH","Os02g0216300","promoter","Os02g0216300","Similar to cDNA clone:J023088C01, full insert sequence && - && -"]
[2,6516037,6516144,108,30,0.18846237676116,0.0564549547569046,0.132007422004256,164.711910285355,"CHH","Target=(CGA)n:3-89;Class=Simple_repeat","repeat"]
[2,6518112,6518492,381,104,0.146854183823288,0.0531205577817103,0.0937336260415781,580.565284554266,"CHH","Os02g0216300","intron","Os02g0216300","Similar to cDNA clone:J023088C01, full insert sequence && - && -"]
[2,6819891,6819993,103,27,0.269210741243671,0.138731613802073,0.130479127441598,126.289483321334,"CHH","2:6819548:6821548","CGI_shore"]
[2,6902118,6902354,237,77,0.247909684570659,0.133157484126412,0.114752200444247,422.71473357853,"CHH","Os02g0223200","exon","Os02g0223200","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6903412,6903620,209,68,0.320709456400108,0.159378511034452,0.161330945365656,391.843441946746,"CHH","Os02g0223200","exon","Os02g0223200","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6903412,6903620,209,68,0.320709456400108,0.159378511034452,0.161330945365656,391.843441946746,"CHH","2:6877127:6903713","CGI"]
[2,7017878,7017963,86,12,0.832220029145941,0.523517247518043,0.308702781627898,59.7449206267362,"CG","Os02g0224900","promoter","Os02g0224900","Similar to ATPP2-A13 && sp|Q9LN77|P2A12_ARATH F-box protein PP2-A12 OS=Arabidopsis thaliana OX=3702 GN=P2A12 PE=2 SV=1 && -"]
[2,7261882,7262105,224,53,0.245159583766969,0.113306172835382,0.131853410931587,252.506063242132,"CHH","Os02g0229000","promoter","Os02g0229000","Similar to 40S ribosomal protein S19-like && sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1 && PF01282:Ribosomal protein S24e"]
[2,7263020,7263186,167,56,0.134647214989011,0.0194109140147715,0.115236300974239,243.909770661134,"CHH","Os02g0229200","promoter","Os02g0229200","Hypothetical conserved gene && - && -"]
[2,7520016,7520259,244,61,0.296142655821419,0.161560264568388,0.134582391253031,289.108105916537,"CHH","Os02g0232900","promoter","NOD26 LIKE INTRINSIC PROTEIN 1;1","A member of the Nodulin26-like Intrinsic Protein (NIP) family, Arsenite transporte && sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIP1-1 PE=2 SV=1 && PF00230:Major intrinsic protein"]
[2,7681082,7681168,87,26,0.257441293475608,0.093107870422553,0.164333423053055,134.856052748456,"CHH","Os02g0235701","intron","Os02g0235701","Conserved hypothetical protein && sp|A2YDY2|RL11_ORYSI 60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2 && PF00673:ribosomal L5P family C-terminus"]
[2,7800827,7801063,237,54,0.219644594922199,0.0703071199767173,0.149337474945482,340.263362259886,"CHH","2:7800863:7802863","CGI_shore"]
[2,7899197,7899431,235,68,0.187792458673953,0.0819184803640096,0.105873978309944,320.450478790726,"CHH","2:7899132:7901132","CGI_shore"]
[2,7947585,7947700,116,33,0.3832917127412,0.223703204926765,0.159588507814435,179.210482905751,"CHH","Os02g0240300","promoter","class III peroxidase 29","Similar to Class III peroxidase GvPx2b (Fragment) && sp|A7NY33|PER4_VITVI Peroxidase 4 OS=Vitis vinifera OX=29760 GN=GSVIVT00023967001 PE=1 SV=1 && PF00141:Peroxidase"]
[2,8004418,8004582,165,52,0.0988590094137749,0.0123227341809277,0.0865362752328472,252.568545443658,"CHH","2:8002617:8004618","CGI_shore"]
[2,8004418,8004582,165,52,0.0988590094137749,0.0123227341809277,0.0865362752328472,252.568545443658,"CHH","2:8004496:8006497","CGI_shore"]
[2,8133594,8133704,111,23,0.17559440842726,0.042168284525395,0.133426123901865,108.66711915581,"CHH","2:8132036:8134036","CGI_shore"]
[2,8293524,8293801,278,55,0.230609261441195,0.0977194678039489,0.132889793637247,302.211267828927,"CHH","2:8293036:8295037","CGI_shore"]
[2,8662405,8662476,72,19,0.0664316448761555,0.00973897130330978,0.0566926735728457,105.259098383251,"CHH","Os02g0253700","promoter","Os02g0253700","Conserved hypothetical protein && - && -"]
[2,8662405,8662476,72,19,0.0664316448761555,0.00973897130330978,0.0566926735728457,105.259098383251,"CHH","2:8662313:8664314","CGI_shore"]
[2,8695582,8695690,109,29,0.140119531809221,0.0478745509001215,0.0922449809091,176.002313399518,"CHH","Os02g0254366","promoter","Os02g0254366","EF-hand-like domain domain containing protein && sp|P04352|CALM_CHLRE Calmodulin OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=2 && -"]
[2,8715198,8715327,130,29,0.419179188177691,0.189799014426934,0.229380173750757,159.585493704228,"CHH","2:8715029:8717030","CGI_shore"]
[2,8854805,8854925,121,36,0.365788972016898,0.181043033447406,0.184745938569492,182.00455058204,"CG","Os02g0256800","exon","UCLACYANIN-LIKE PROTEIN 2","Cupredoxin domain containing protein && sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1 && PF02298:Plastocyanin-like domain"]
[2,8930127,8930242,116,37,0.0784161945987016,0.0107645718411778,0.0676516227575238,220.155959481335,"CHH","2:8929834:8931834","CGI_shore"]
[2,9010932,9010986,55,18,0.0704830326734228,0.020834783453564,0.0496482492198588,109.165590404086,"CHH","2:9009119:9011119","CGI_shore"]
[2,9110507,9110691,185,59,0.164380223872607,0.056701495752246,0.107678728120361,349.860198415494,"CHH","2:9108988:9110989","CGI_shore"]
[2,9211519,9211592,74,12,0.457024440087015,0.153191330786615,0.3038331093004,55.6752145761218,"CHG","2:9211203:9212203","CGI"]
[2,9211583,9211640,58,14,0.829320573678002,0.552643151614766,0.276677422063236,82.9611092200989,"CG","2:9211203:9212203","CGI"]
[2,9564906,9565016,111,28,0.252906601184436,0.0850469279423168,0.16785967324212,130.419745615649,"CHH","2:9560437:9572400","CGI"]
[2,9653782,9653943,162,46,0.399167759918018,0.266116555023107,0.133051204894912,220.901488668204,"CHH","Os02g0269600","intron","Subtilisin 13, SUBTILISIN 13","Similar to Subtilase && sp|Q9MAP7|SBT35_ARATH Subtilisin-like protease SBT3.5 OS=Arabidopsis thaliana OX=3702 GN=SBT3.5 PE=1 SV=1 && PF00082:Subtilase family|PF05922:Peptidase inhibitor I9|PF17766:Fibronectin type-III domain"]
[2,9712073,9712241,169,62,0.0978134323310341,0.0290606479245647,0.0687527844064693,318.131793645247,"CHH","Os02g0270350","promoter","Os02g0270350","Hypothetical protein && sp|Q9ZSB0|SBT39_ARATH Subtilisin-like protease SBT3.9 OS=Arabidopsis thaliana OX=3702 GN=SBT3.9 PE=3 SV=1 && -"]
[2,9823186,9823384,199,46,0.241241130873655,0.134631555751781,0.106609575121874,202.814688333288,"CHH","2:9823031:9823439","CGI"]
[2,9907362,9907442,81,21,0.101597070351168,0.0207014829932351,0.0808955873579326,125.311225882715,"CHH","2:9907277:9909277","CGI_shore"]
[2,9938392,9938524,133,37,0.20222116303346999,0.0772915678282247,0.124929595205245,198.680741801715,"CHH","2:9937412:9939413","CGI_shore"]
[2,9991532,9991603,72,21,0.231932501122232,0.0814389961037944,0.150493505018437,104.414598618036,"CHH","Os02g0273900","promoter","Os02g0273900","Conserved hypothetical protein && - && -"]
[2,10192952,10193047,96,25,0.1970927632643,0.0832888720391682,0.113803891225132,128.936912107023,"CHH","2:10191281:10193281","CGI_shore"]
[2,10319361,10319566,206,73,0.247189330950068,0.13194549350209,0.115243837447978,359.245605390656,"CHH","2:10317504:10319504","CGI_shore"]
[2,10504234,10504314,81,32,0.135153198428204,0.0695267082306262,0.0656264901975776,144.936528194497,"CHH","Os02g0282000","intron","Os02g0282000","NB-ARC domain containing protein && sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1 && PF00931:NB-ARC domain|PF18052:Rx N-terminal domain"]
[2,10677073,10677126,54,16,0.145119937029102,0.0616393642636835,0.0834805727654186,93.2085395000043,"CHH","2:10676362:10678363","CGI_shore"]
[2,10709251,10709309,59,24,0.300544020429353,0.152511195188016,0.148032825241338,111.970178266914,"CHH","2:10703500:10710027","CGI"]
[2,10927657,10927881,225,77,0.112225618267293,0.0421547451351061,0.0700708731321864,377.858447534715,"CHH","2:10925750:10927751","CGI_shore"]
[2,11045038,11045116,79,28,0.289860975465266,0.166925905941448,0.122935069523818,146.826876412547,"CHH","2:11045068:11045668","CGI"]
[2,11071163,11071231,69,9,0.679397890003716,0.413212674778709,0.266185215225007,41.0681585476475,"CHG","2:11069733:11071733","CGI_shore"]
[2,11358365,11358527,163,42,0.241664014022758,0.0555725705377803,0.186091443484977,279.303784615358,"CHH","Os02g0297000","utr5","Os02g0297000","Conserved hypothetical protein && - && -"]
[2,11360324,11360513,190,51,0.149833894666567,0.0502411055060303,0.0995927891605371,249.037443281598,"CHH","Os02g0297000","utr3","Os02g0297000","Conserved hypothetical protein && - && -"]
[2,11578194,11578289,96,19,0.114634633853205,0.042005857907124,0.0726287759460809,99.9793252457585,"CHH","2:11576357:11578358","CGI_shore"]
[2,11726571,11726698,128,19,0.312155476568311,0.125431130294701,0.18672434627361,96.4768781273555,"CG","Os02g0302200","intron","Os02g0302200","Similar to aminotransferase family protein && sp|Q9LVY1|TAT_ARATH Tyrosine aminotransferase OS=Arabidopsis thaliana OX=3702 GN=TAT PE=2 SV=1 && PF00155:Aminotransferase class I and II"]
[2,11730308,11730429,122,29,0.107374213189504,0.0378564983090002,0.0695177148805039,136.119116624346,"CHH","Os02g0302450","promoter","Os02g0302450","Similar to cDNA, clone: J100059G16, full insert sequence && - && -"]
[2,11836048,11836123,76,15,0.874710041092273,0.611193150111969,0.263516890980304,60.4719135794465,"CG","2:11834141:11836142","CGI_shore"]
[2,12188859,12188919,61,19,0.791285921132478,0.573273181089412,0.218012740043066,80.3259817449213,"CG","2:12188703:12189098","CGI"]
[2,12193880,12193948,69,17,0.16053163074131,0.0261752946450561,0.134356336096254,80.9074892581732,"CHH","2:12193720:12195721","CGI_shore"]
[2,12359900,12360090,191,29,0.411352229954873,0.0415821560105851,0.369770073944288,203.617101556752,"CHH","2:12358900:12360901","CGI_shore"]
[2,12634425,12634704,280,73,0.32563330607958,0.175760479187531,0.149872826892049,329.596788648678,"CG","2:12633487:12635488","CGI_shore"]
[2,12634460,12634517,58,9,0.135142555422096,0.0505712916578237,0.0845712637642725,37.7111723276508,"CHG","2:12634391:12634831","CGI"]
[2,12810983,12811083,101,28,0.0762388174834531,0.00685953742413875,0.0693792800593143,141.429143565621,"CHH","Os02g0321000","intron","Os02g0321000","Pentatricopeptide repeat domain containing protein && - && -"]
[2,12972468,12972558,91,28,0.182335145815031,0.0859473255599027,0.096387820255128,141.399668076589,"CHH","2:12970393:12973137","CGI"]
[2,13192186,13192344,159,47,0.190949238603384,0.099937062381173,0.0910121762222107,214.847961833482,"CHH","2:13190494:13192495","CGI_shore"]
[2,13228383,13228655,273,102,0.177541490942586,0.0426699281111377,0.134871562831449,692.057532710015,"CHH","2:13226851:13228462","CGI"]
[2,13277401,13277624,224,73,0.205640562957418,0.10340550150588,0.102235061451539,368.487650230149,"CHH","2:13277358:13277622","CGI"]
[2,13404747,13404933,187,41,0.188291330629938,0.0671900231043324,0.121101307525605,198.481588845923,"CHH","2:13379166:13457504","CGI"]
[2,13529878,13529945,68,8,0.402590774207393,0.127012445314088,0.275578328893305,44.3441574953474,"CG","2:13528980:13532049","CGI"]
[2,13543108,13543183,76,25,0.0696964342846622,0.0228880803969101,0.0468083538877521,106.451583601221,"CHH","2:13542438:13544439","CGI_shore"]
[2,13860286,13860398,113,23,0.783499989176891,0.559202435805989,0.224297553370902,96.8967442273485,"CG","2:13858916:13860587","CGI"]
[2,13895115,13895282,168,31,0.388493509647063,0.2185657073526,0.169927802294463,160.567743472813,"CHH","2:13895232:13896097","CGI"]
[2,14010143,14010237,95,40,0.237098169761984,0.0567143642788356,0.180383805483148,268.874121575495,"CHH","Os02g0438200","intron","CYCLIN-T1-1","Transcription regulator cyclin domain containing protein && sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1_2 PE=2 SV=2 && -"]
[2,14114382,14114543,162,20,0.446754822504821,0.211018069316346,0.235736753188476,97.9039816069266,"CG","2:14113581:14115581","CGI_shore"]
[2,14182595,14182731,137,32,0.0813887174813755,0.0149576245428632,0.0664310929385123,144.911052504604,"CHH","2:14181352:14183353","CGI_shore"]
[2,14471080,14471269,190,71,0.500762797373595,0.321476679598127,0.179286117775467,367.481478463815,"CHH","2:14470531:14472532","CGI_shore"]
[2,14835088,14835152,65,11,0.10888372452216,0.0183378378860678,0.0905458866360926,43.6709070863558,"CHG","2:14833104:14835104","CGI_shore"]
[2,14835088,14835152,65,11,0.10888372452216,0.0183378378860678,0.0905458866360926,43.6709070863558,"CHG","2:14835105:14836098","CGI"]
[2,15219375,15219496,122,21,0.867242178451109,0.602859655539732,0.264382522911377,95.435703349518,"CG","2:15216614:15222211","CGI"]
[2,15401907,15401959,53,22,0.0936988900578455,0.0198226780565223,0.0738762120013232,114.800969588861,"CHH","2:15401803:15403803","CGI_shore"]
[2,15690289,15690387,99,32,0.108659241219902,0.0131764362237944,0.0954828049961073,218.913712966899,"CHH","2:15688581:15690581","CGI_shore"]
[2,15742337,15742489,153,24,0.0874303388107794,0.00708058431592754,0.0803497544948518,144.528567038932,"CHH","Os02g0467700","intron","Os02g0467700","Glycosyl transferase, family 28, C-terminal domain containing protein && sp|Q5I0K7|ALG13_RAT UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus OX=10116 GN=Alg13 PE=1 SV=1 && -"]
[2,15757646,15757737,92,24,0.0888026259786466,0.017072184939485,0.0717304410391616,127.466819330216,"CHH","2:15757454:15759454","CGI_shore"]
[2,15835266,15835325,60,16,0.132504589399932,0.0401719146069794,0.0923326747929525,84.6084355068655,"CHH","2:15835110:15835386","CGI"]
[2,16273398,16273474,77,31,0.220036421137413,0.113888976571974,0.106147444565438,137.396732829661,"CHH","2:16271436:16273436","CGI_shore"]
[2,16273398,16273474,77,31,0.220036421137413,0.113888976571974,0.106147444565438,137.396732829661,"CHH","Os02g0475500","intron","Os02g0475500","NB-ARC domain containing protein && sp|Q2QZF1|PIK6_ORYSJ Disease resistance protein PIK6-NP OS=Oryza sativa subsp. japonica OX=39947 GN=PIK6-NP PE=2 SV=1 && PF00931:NB-ARC domain"]
[2,16394527,16394732,206,55,0.165470442702294,0.0504189804609051,0.115051462241389,305.210542422896,"CHH","2:16394301:16396301","CGI_shore"]
[2,16450402,16450568,167,18,0.492386520226509,0.245272444448317,0.247114075778191,94.4096533056972,"CHG","Os02g0478900","TSS","Os02g0478900","Similar to Splicing factor 3B subunit 1 && sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis OX=8355 GN=sf3b1 PE=2 SV=1 && PF08920:Splicing factor 3B subunit 1"]
[2,16450402,16450568,167,18,0.492386520226509,0.245272444448317,0.247114075778191,94.4096533056972,"CHG","Os02g0478900","exon","Os02g0478900","Similar to Splicing factor 3B subunit 1 && sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis OX=8355 GN=sf3b1 PE=2 SV=1 && PF08920:Splicing factor 3B subunit 1"]
[2,16805467,16805525,59,14,0.17112430553352,0.0649147105286294,0.10620959500489,76.7376120132716,"CHH","Os02g0485800","promoter","Os02g0485800","Transferase domain containing protein && sp|Q9LRQ8|PMAT2_ARATH Phenolic glucoside malonyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=PMAT2 PE=1 SV=1 && PF02458:Transferase family"]
[2,17000786,17000977,192,62,0.0960390301480881,0.0196073235350853,0.0764317066130027,291.280356622737,"CHH","2:17000779:17001472","CGI"]
[2,17045515,17045707,193,57,0.196820623282368,0.134519194937238,0.0623014283451299,218.388661850025,"CHH","Os02g0489525","promoter","Os02g0489525","Hypothetical protein && sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=1 SV=1 && -"]
[2,17161481,17161617,137,27,0.333906707950467,0.13433463771098,0.199572070239487,148.214467123208,"CHH","2:17161112:17163113","CGI_shore"]
[2,17205410,17205546,137,47,0.245064578659896,0.061366260812637,0.183698317847259,268.641245341758,"CHH","2:17205532:17206576","CGI"]
[2,17206275,17206393,119,31,0.261321864543124,0.10666075529787,0.154661109245253,161.590254723463,"CHH","Os02g0492000","promoter","Os02g0492000","Ankyrin repeat containing protein && - && PF13637:Ankyrin repeats (many copies)|PF12796:Ankyrin repeats (3 copies)"]
[2,17222756,17222934,179,53,0.139194741618632,0.0415692409756676,0.0976255006429646,247.951724422987,"CHH","Os02g0492500","promoter","Os02g0492500","Domain of unknown function DUF1618 domain containing protein && - && PF07762:Protein of unknown function (DUF1618)"]
[2,17724962,17725019,58,4,0.58539595571993,0.126596046414702,0.458799909305228,19.679382037694,"CHG","2:17724236:17726236","CGI_shore"]
[2,17879165,17879346,182,50,0.2528467361887,0.127705201818966,0.125141534369734,236.792280227516,"CHH","Os02g0504000","promoter","Os02g0504000","Similar to Cytochrome P450 CYP81L6 && sp|W8JMU7|CYQ32_CATRO Cytochrome P450 81Q32 OS=Catharanthus roseus OX=4058 GN=CYP81Q32 PE=2 SV=1 && -"]
[2,17925762,17925850,89,24,0.117869858830089,0.0177969630316045,0.100072895798484,115.342771253536,"CHH","2:17924523:17926524","CGI_shore"]
[2,17926308,17930515,4208,50,0.179276956827929,0.0570531835029766,0.122223773324953,363.55571736998,"CHH","2:17928749:17930749","CGI_shore"]
[2,17992605,17992772,168,41,0.107337744603331,0.0176030034651684,0.0897347411381624,222.77227547277,"CHH","2:17992156:17994157","CGI_shore"]
[2,18037376,18037545,170,57,0.154248553498312,0.0205143467080119,0.1337342067903,297.137796083181,"CHH","2:18036988:18038988","CGI_shore"]
[2,18251083,18251167,85,29,0.175060479424097,0.05169082795663,0.123369651467467,140.080892775041,"CHH","2:18250625:18251106","CGI"]
[2,18266878,18267128,251,77,0.196167030733738,0.0890291268468688,0.10713790388687,395.662981406872,"CHH","2:18266102:18268102","CGI_shore"]
[2,18341913,18341971,59,25,0.19584086851877,0.0886199950890598,0.10722087342971,120.418134076864,"CHH","2:18341067:18342725","CGI"]
[2,18371666,18371748,83,24,0.0567753782829052,1.85103391558369E-3,0.0549243443673215,137.166621012151,"CHH","2:18369783:18371783","CGI_shore"]
[2,18573970,18574231,262,78,0.134994617918394,0.0343154436616047,0.100679174256789,490.788092757066,"CHH","Os02g0515100","promoter","Os02g0515100","Protamine P1 domain containing protein && sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RLP2 PE=2 SV=1 && -"]
[2,18583265,18583373,109,19,0.171723949105246,0.0388875098340637,0.132836439271182,113.958642355956,"CHH","Os02g0515200","promoter","Os02g0515200","BAR domain containing protein && sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana OX=3702 GN=At2g33490 PE=4 SV=2 && -"]
[2,18659059,18659348,290,57,0.40459176091509,0.230115994474539,0.174475766440551,304.008257527912,"CHH","Os02g0516901","promoter","Os02g0516901","Hypothetical gene && sp|Q8VZ20|ASR3_ARATH Trihelix transcription factor ASR3 OS=Arabidopsis thaliana OX=3702 GN=ASR3 PE=1 SV=1 && PF13837:Myb/SANT-like DNA-binding domain"]
[2,19292692,19292784,93,16,0.32991188611516,0.034390553783426,0.295521332331734,100.733352562061,"CHH","2:19292205:19294206","CGI_shore"]
[2,19434306,19434378,73,22,0.103020115660691,0.0469001417421556,0.0561199739185358,136.588862918539,"CHH","2:19433864:19435865","CGI_shore"]
[2,19503196,19503461,266,79,0.485833118759873,0.34703581504793,0.138797303711943,378.08647475232,"CHH","2:19501494:19503494","CGI_shore"]
[2,19657798,19657865,68,25,0.114586306736538,0.0358472924772084,0.0787390142593299,118.194799850105,"CHH","2:19657717:19659718","CGI_shore"]
[2,19714177,19714228,52,15,0.270745690183188,0.163357121738435,0.107388568444753,88.7052966643209,"CHH","2:19713555:19715556","CGI_shore"]
[2,19999016,19999122,107,18,0.21448066207455,6.75688524619394E-3,0.207723776828356,92.1536161215835,"CHH","2:19998793:20000793","CGI_shore"]
[2,20077185,20077302,118,33,0.619999845745929,0.470588107811306,0.149411737934623,168.664652841792,"CHH","2:20077109:20079110","CGI_shore"]
[2,20130917,20131044,128,55,0.101121215523707,0.0438358873550841,0.0572853281686229,250.248445087945,"CHH","Os02g0541900","promoter","OsSTA63","Conserved hypothetical protein && - && -"]
[2,20143102,20143193,92,28,0.128902064411561,0.0424959704500484,0.0864060939615123,134.121594922917,"CHH","2:20141412:20143413","CGI_shore"]
[2,20167687,20167827,141,49,0.553312212538084,0.35474148302633,0.198570729511754,251.227155954713,"CHH","Os02g0543000","promoter","ABSCISIC ACID-STRESS-RIPENING-INDUCIBLE 1 PROTEIN","Abscisic stress ripening protein 1 && - && PF02496:ABA/WDS induced protein"]
[2,20194830,20195335,506,142,0.242677913822872,0.110776343751969,0.131901570070903,762.784868280087,"CHH","2:20193857:20195858","CGI_shore"]
[2,20469098,20469290,193,40,0.270310757616392,0.0112299549967083,0.259080802619684,221.174193960473,"CHH","2:20465512:20477758","CGI"]
[2,20627188,20627459,272,59,0.104892929377485,0.00567053289993114,0.0992223964775542,379.023019493545,"CHH","2:20625496:20627496","CGI_shore"]
[2,20634114,20634189,76,24,0.305554685360438,0.0646437745546798,0.240910910805759,166.946448487208,"CHH","2:20634165:20636166","CGI_shore"]
[2,20940011,20940063,53,14,0.17822762758165,0.0633046259838142,0.114923001597836,68.5248605684758,"CHH","2:20938470:20940471","CGI_shore"]
[2,21377285,21377401,117,31,0.308855399164426,0.18570945699126,0.123145942173166,146.796912811684,"CHH","2:21376808:21378809","CGI_shore"]
[2,21392382,21392531,150,36,0.575410438515816,0.428339014395946,0.14707142411987,163.114645747335,"CHH","2:21391023:21393024","CGI_shore"]
[2,21423424,21423475,52,14,0.221864628221687,0.0966450328015655,0.125219595420121,74.9518346493033,"CHH","2:21422426:21424427","CGI_shore"]
[2,21503462,21503629,168,70,0.0671471699317845,0.0241534183536336,0.0429937515781508,339.334755633435,"CHH","Target=(TGG)n:2-179;Class=Simple_repeat","repeat"]
[2,21644599,21644827,229,40,0.129185197368771,0.00740130005503128,0.12178389731374,207.812004124554,"CHH","2:21644546:21646546","CGI_shore"]
[2,21872265,21872349,85,17,0.31906040794788,0.155140983339995,0.163919424607884,71.8772141136124,"CG","2:21871729:21873668","CGI"]
[2,21915909,21915993,85,29,0.11861763923647,0.0516208017611623,0.0669968374753073,145.497682517238,"CHH","Os02g0572200","promoter","Os02g0572200","Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein) && sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2 && PF13639:Ring finger domain"]
[2,21961327,21961484,158,58,0.130991091844898,0.0569856809008741,0.074005410944024,270.215392505597,"CHH","Os02g0572900","promoter","Os02g0572900","Zinc finger, C2H2-type domain containing protein && sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0871200 PE=2 SV=1 && -"]
[2,22003866,22004072,207,43,0.269953545828885,0.126997376828772,0.142956169000114,208.995547649033,"CHH","2:22003400:22005401","CGI_shore"]
[2,22017870,22017943,74,20,0.164534630430976,0.0432050541359154,0.12132957629506,92.5508527250801,"CHH","2:22017565:22019566","CGI_shore"]
[2,22332451,22332669,219,57,0.529822514502345,0.332500855655033,0.197321658847312,321.622420836227,"CHH","Os02g0580100","promoter","Os02g0580100","Protein of unknown function DUF580 family protein && sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0274487 PE=3 SV=1 && PF04515:Plasma-membrane choline transporter"]
[2,22332451,22332669,219,57,0.529822514502345,0.332500855655033,0.197321658847312,321.622420836227,"CHH","2:22331064:22334184","CGI"]
[2,22483715,22483902,188,37,0.181882026604656,0.0623371926942845,0.119544833910372,191.084018062258,"CHH","2:22483865:22485865","CGI_shore"]
[2,22535978,22536042,65,19,0.295586403628888,0.154130214442848,0.14145618918604,97.2909887096048,"CHH","Os02g0584300","exon","Os02g0584300","Conserved hypothetical protein && sp|Q7XTQ5|MEX1_ORYSJ Maltose excess protein 1-like, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0602400 PE=2 SV=2 && -"]
[2,22536379,22536489,111,37,0.456411397484012,0.31778853876948,0.138622858714532,157.81957109979,"CHH","2:22535045:22541977","CGI"]
[2,22564622,22564694,73,22,0.16957336972796,0.0488728876289145,0.120700482099045,111.327678161048,"CHH","2:22562850:22564851","CGI_shore"]
[2,22727393,22727497,105,20,0.311772523873677,0.177069606583233,0.134702917290445,95.9043277064015,"CHH","2:22725873:22727873","CGI_shore"]
[2,22727393,22727497,105,20,0.311772523873677,0.177069606583233,0.134702917290445,95.9043277064015,"CHH","2:22726641:22728642","CGI_shore"]
[2,22744982,22745220,239,78,0.125426794058945,0.0500544500946135,0.0753723439643316,386.202297925648,"CHH","Os02g0589500","promoter","Os02g0589500","Hypothetical gene && - && -"]
[2,22787396,22787455,60,12,0.142693245671645,0.0179374442977131,0.124755801373931,90.7337233121899,"CHH","2:22786219:22788220","CGI_shore"]
[2,22795169,22795483,315,72,0.132932762528293,0.0167966564587635,0.116136106069529,423.87960719654,"CHH","2:22795122:22797122","CGI_shore"]
[2,22812350,22812414,65,21,0.234185098988432,0.0938368376114122,0.14034826137702,97.1073077295331,"CHH","2:22812197:22812993","CGI"]
[2,22911601,22911710,110,33,0.522242719181009,0.37690528553695,0.145337433644059,161.478903151144,"CHH","2:22910627:22912628","CGI_shore"]
[2,23230180,23230438,259,91,0.268379725657261,0.0855018878763282,0.182877837780932,559.008352247469,"CHH","Os02g0597700","exon","Os02g0597700","Ubiquitin domain containing protein && sp|Q0WUQ1|BAG1_ARATH BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana OX=3702 GN=BAG1 PE=1 SV=1 && -"]
[2,23478407,23478590,184,50,0.268398589081776,0.0466045433017056,0.22179404578007,283.577821539492,"CHH","2:23478148:23480149","CGI_shore"]
[2,23784454,23784545,92,15,0.245217576908313,0.070069921535461,0.175147655372852,73.0677430826512,"CHH","2:23781609:23813292","CGI"]
[2,23908826,23908942,117,20,0.443525256838133,0.255225231151107,0.188300025687026,90.6507525955043,"CHH","2:23908495:23910496","CGI_shore"]
[2,24043544,24043648,105,35,0.273119892425636,0.106731820749724,0.166388071675912,169.453187877811,"CHH","2:24043512:24045513","CGI_shore"]
[2,24067342,24067486,145,39,0.332693621069602,0.0867500827643696,0.245943538305233,249.785659205049,"CHH","2:24066535:24068536","CGI_shore"]
[2,24157575,24157677,103,31,0.0557735574982836,0.0144178578385448,0.0413556996597388,154.814130076266,"CHH","Os02g0613000","promoter","Os02g0613000","EF-Hand type domain containing protein && sp|Q9SZ45|MICU_ARATH Calcium uptake protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MICU PE=2 SV=1 && PF00036:EF hand|PF13833:EF-hand domain pair"]
[2,24372698,24372797,100,27,0.196744535652993,0.0700521870697148,0.126692348583279,144.635306129102,"CHH","2:24370973:24372974","CGI_shore"]
[2,24392743,24392840,98,27,0.141589440372153,0.0326761775572798,0.108913262814874,136.149343445424,"CHH","Os02g0616450","utr3","Os02g0616450","Hypothetical gene && sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica OX=39947 GN=AGO12 PE=2 SV=2 && -"]
[2,24540936,24541022,87,45,0.0523472337696629,0.0256204239910649,0.0267268097785981,164.436987555018,"CHH","2:24540843:24542844","CGI_shore"]
[2,24560387,24560490,104,18,0.16121836475068,0.0158217127775654,0.145396651973115,88.3098598757805,"CHH","2:24560353:24562354","CGI_shore"]
[2,24648734,24648870,137,41,0.208885524097542,0.109084964753986,0.099800559343556,205.651363945045,"CHH","2:24648698:24650698","CGI_shore"]
[2,24721616,24721789,174,19,0.330678014068702,0.150454750253312,0.18022326381539,95.2433632511853,"CHH","2:24721152:24723152","CGI_shore"]
[2,24778832,24778931,100,12,0.375303514480015,0.0598833996330658,0.31542011484695,69.2565943500214,"CHH","Os02g0622400","promoter","Os02g0622400","Glycolipid transfer protein, GLTP domain containing protein && sp|O22797|GLTP1_ARATH Glycolipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=GLTP1 PE=2 SV=1 && PF08718:Glycolipid transfer protein (GLTP)"]
[2,24934763,24934836,74,16,0.0817994861539011,0.0226791384162143,0.0591203477376868,78.452265750131,"CHH","2:24933201:24935202","CGI_shore"]
[2,25238421,25238501,81,19,0.115743806141217,0.0167248322149182,0.0990189739262984,110.031330066883,"CHH","2:25237597:25239598","CGI_shore"]
[2,25317944,25318135,192,55,0.306703802161843,0.17183290156776,0.134870900594082,280.48858932044,"CHH","Os02g0632100","promoter","Os02g0632100","Similar to WAK111 - OsWAK receptor-like protein kinase && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF00069:Protein kinase domain"]
[2,25474910,25474988,79,23,0.136571106898367,0.00953748078489778,0.127033626113469,118.974976202646,"CHH","2:25474839:25476839","CGI_shore"]
[2,25514551,25514620,70,20,0.119770123680699,0.0471485793872502,0.072621544293449,97.2365871852652,"CHH","2:25514252:25516253","CGI_shore"]
[2,25573607,25573879,273,60,0.370954803594061,0.179992932764833,0.190961870829228,311.113879088359,"CHH","Os02g0637800","intron","Os02g0637800","Hypothetical conserved gene && - && -"]
[2,25774741,25774931,191,48,0.0933745017505248,0.0100659260244592,0.0833085757260655,299.765721389955,"CHH","2:25773683:25775683","CGI_shore"]
[2,25870974,25871036,63,22,0.42268295111568,0.299818001066891,0.122864950048789,95.8397332427957,"CHH","2:25869015:25871016","CGI_shore"]
[2,25943334,25943549,216,67,0.358536224345954,0.199721266683536,0.158814957662418,438.275005082046,"CHH","Os02g0644600","intron","Os02g0644600","Pentatricopeptide repeat domain containing protein && - && PF12854:PPR repeat|PF13041:PPR repeat family"]
[2,26125576,26125708,133,20,0.181183376054094,0.044455136571194,0.1367282394829,89.2172107556012,"CHH","2:26123955:26125956","CGI_shore"]
[2,26347255,26347381,127,31,0.377419475160971,0.178319610650557,0.199099864510414,152.426343946898,"CHH","2:26336492:26360134","CGI"]
[2,26498588,26498773,186,54,0.19034164549209,0.0291639734481141,0.161177672043976,284.480980297932,"CHH","2:26496812:26502559","CGI"]
[2,26859099,26859211,113,47,0.209506287185147,0.0430086644576935,0.166497622727454,332.472652669198,"CHH","2:26857514:26859515","CGI_shore"]
[2,27016857,27017007,151,48,0.245951524332407,0.109946984283731,0.136004540048675,225.458539661736,"CHH","Os02g0665250","promoter","Os02g0665250","Conserved hypothetical protein && - && -"]
[2,27017063,27017146,84,20,0.263917863901874,0.146328110040512,0.117589753861363,108.093558753714,"CHH","Os02g0665300","promoter","Serine protease 1, Subtilisin 20, SUBTILISIN 20","Peptidase S8, subtilisin-related domain containing protein && sp|A9QY40|SBT1_LOTJA Subtilisin-like protease 1 OS=Lotus japonicus OX=34305 GN=SBTM1 PE=2 SV=1 && PF05922:Peptidase inhibitor I9|PF00082:Subtilase family|PF17766:Fibronectin type-III domain"]
[2,27088075,27088242,168,16,0.284060160237124,0.0229017517638714,0.261158408473253,83.9184251175597,"CHH","Os02g0667050","promoter","Os02g0667050","Hypothetical gene && - && -"]
[2,27222794,27222874,81,7,0.79498888660995,0.612728276602392,0.182260610007558,31.8125536557053,"CG","2:27222217:27223614","CGI"]
[2,27309290,27309366,77,18,0.115670705815594,0.00707317974479232,0.108597526070802,109.038157610063,"CHH","2:27309145:27311146","CGI_shore"]
[2,27336240,27336358,119,15,0.204457592916256,0.069962156197322,0.134495436718934,71.3844669527313,"CHG","Os02g0672200","promoter","ARGONAUTE 1A","Similar to AGO1 homologous protein && sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica OX=39947 GN=AGO1A PE=2 SV=1 && PF08699:Argonaute linker 1 domain|PF16486:N-terminal domain of argonaute|PF16488:Argonaute linker 2 domain|PF02170:PAZ domain|PF12764:Glycine-rich region of argonaut|PF16487:Mid domain of argonaute|PF02171:Piwi domain"]
[2,27450638,27450735,98,24,0.0696254935367973,0.0209240538996147,0.0487014396371825,130.044491779513,"CHH","2:27449635:27451635","CGI_shore"]
[2,27676927,27677040,114,15,0.631711973388576,0.385068059996464,0.246643913392111,61.8748209633753,"CHG","2:27675472:27677473","CGI_shore"]
[2,27678677,27678743,67,6,0.403280872782167,0.160454584397006,0.242826288385161,34.7384419335622,"CHG","2:27677927:27679287","CGI"]
[2,27678814,27678889,76,14,0.359822148912772,0.182857230796992,0.176964918115781,66.4118928685195,"CHG","2:27677927:27679287","CGI"]
[2,28049068,28049242,175,33,0.472034431723157,0.266084847722351,0.205949584000806,178.081648704528,"CHH","2:28022344:28065163","CGI"]
[2,28098276,28098469,194,18,0.228254983317259,0.0833768833860832,0.144878099931176,103.710387831548,"CHH","Os02g0686100","promoter","Os02g0686100","Similar to RING-H2 finger protein ATL1B && sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2 && PF13639:Ring finger domain"]
[2,28264502,28264742,241,92,0.486281670747503,0.335444633433381,0.150837037314122,433.095396019623,"CHH","Os02g0689066","promoter","Os02g0689066","Conserved hypothetical protein && sp|Q7XBS0|DUR3_ORYSJ Urea-proton symporter DUR3 OS=Oryza sativa subsp. japonica OX=39947 GN=DUR3 PE=1 SV=1 && PF04043:Plant invertase/pectin methylesterase inhibitor"]
[2,28287133,28287318,186,45,0.255819158134291,0.0853786865593418,0.170440471574949,234.33730111238,"CHH","Os02g0689600","promoter","Os02g0689600","Domain of unknown function DUF828 domain containing protein && sp|Q8W4K5|VAB_ARATH VAN3-binding protein OS=Arabidopsis thaliana OX=3702 GN=VAB PE=1 SV=1 && PF05703:Auxin canalisation|PF08458:Plant pleckstrin homology-like region"]
[2,28308675,28308783,109,47,0.328712915632825,0.209409502357056,0.119303413275769,224.503563506325,"CHH","2:28307719:28309916","CGI"]
[2,28616789,28616919,131,35,0.202400639346078,0.0990645681301368,0.103336071215941,156.128076469368,"CHH","2:28615333:28617334","CGI_shore"]
[2,28765102,28765338,237,71,0.166619501517957,0.0547386373947158,0.111880864123241,329.927793823154,"CHH","Os02g0699400","intron","Os02g0699400","RelA/SpoT protein domain containing protein && sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) OX=224308 GN=relA PE=1 SV=3 && PF04607:Region found in RelA / SpoT proteins"]
[2,28787598,28787833,236,73,0.43382042359961,0.29581465843325,0.13800576516636,328.440022168261,"CHH","2:28786683:28788683","CGI_shore"]
[2,29404864,29404997,134,29,0.163185863900925,0.063011521146286,0.100174342754639,131.31342307097,"CHH","2:29404208:29406208","CGI_shore"]
[2,29885357,29885438,82,18,0.0539199642407604,1.55096122129335E-3,0.052369003019467,83.8696333959229,"CHH","2:29883985:29885985","CGI_shore"]
[2,30092411,30092542,132,38,0.256559251123934,0.144197788186965,0.112361462936969,172.744664128401,"CHH","2:30092021:30094021","CGI_shore"]
[2,30331005,30331148,144,26,0.341807021990663,0.140569727576605,0.201237294414058,195.445257170815,"CHH","2:30329791:30331548","CGI"]
[2,30581650,30581706,57,24,0.0947363809143185,0.0326590674457091,0.0620773134686094,118.709131540428,"CHH","Os02g0733500","promoter","CALMODULIN-LIKE PROTEIN 20","EF-Hand type domain containing protein && sp|Q6Z2J1|CML20_ORYSJ Probable calcium-binding protein CML20 OS=Oryza sativa subsp. japonica OX=39947 GN=CML20 PE=2 SV=1 && PF00036:EF hand|PF13499:EF-hand domain pair|PF13202:EF hand"]
[2,30586848,30586907,60,16,0.384669557656797,0.156833302403038,0.227836255253759,75.8789408391921,"CHH","2:30571072:30622547","CGI"]
[2,31138523,31138652,130,34,0.0990887493313239,0.0274000988201858,0.0716886505111382,169.227160278683,"CHH","2:31138264:31140264","CGI_shore"]
[2,31499084,31499173,90,27,0.109950181181039,0.0290662675489456,0.0808839136320932,128.990187690318,"CHH","Os02g0749450","promoter","Os02g0749450","Similar to dolichol-phosphate mannosyltransferase-related && sp|Q8LEQ4|DPM3_ARATH Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=DPMS3 PE=1 SV=1 && -"]
[2,31855709,31855858,150,54,0.0671909478575133,0.0107174518482885,0.0564734960092248,224.198353936571,"CHH","2:31849499:31900822","CGI"]
[2,32036538,32036640,103,36,0.320233859233146,0.145450380931633,0.174783478301513,179.22997316483,"CHH","2:32035185:32037186","CGI_shore"]
[2,32073828,32073885,58,27,0.238164813304266,0.0979998963370858,0.14016491696718,126.947913356351,"CHH","Os02g0761600","intron","Os02g0761600","Conserved hypothetical protein && - && -"]
[2,32252825,32252981,157,30,0.494113829433008,0.15714974342937,0.336964086003637,175.114743026182,"CHH","2:32251380:32253380","CGI_shore"]
[2,32582480,32582666,187,79,0.28504519764434,0.160203604150349,0.124841593493991,354.839472430587,"CHH","2:32582268:32584268","CGI_shore"]
[2,32710175,32710436,262,63,0.299102540526125,0.132583560704801,0.166518979821324,380.858029455603,"CHH","2:32709019:32711019","CGI_shore"]
[2,33031642,33031740,99,25,0.223651247962464,0.090696381099274,0.13295486686319,131.51228621578,"CHH","2:33030266:33032266","CGI_shore"]
[2,33639270,33639435,166,24,0.275357077891388,5.51894804608246E-3,0.269838129845305,119.881543782044,"CHH","2:33638141:33640141","CGI_shore"]
[2,33756474,33756725,252,76,0.188739698036939,0.0738485893227621,0.114891108714177,502.234782018896,"CHH","Os02g0794300","exon","Os02g0794300","Protein of unknown function DUF566 family protein && sp|Q9SUH5|AUG8_ARATH AUGMIN subunit 8 OS=Arabidopsis thaliana OX=3702 GN=AUG8 PE=1 SV=1 && PF04484:QWRF family"]
[2,33886610,33886730,121,16,0.543641284110353,0.267762974492409,0.275878309617944,90.5700913650397,"CG","Os02g0796700","exon","OsWD40-57","Similar to protein kinase family protein / WD-40 repeat family protein && sp|Q9M0E5|VPS15_ARATH Serine/threonine-protein kinase VPS15 OS=Arabidopsis thaliana OX=3702 GN=VPS15 PE=1 SV=1 && PF00400:WD domain, G-beta repeat"]
[2,33961305,33961407,103,26,0.216340702128503,0.0155470095162881,0.200793692612215,160.167391966334,"CHH","2:33961401:33961917","CGI"]
[2,33963715,33963799,85,26,0.178086069569085,0.115519389336797,0.0625666802322871,131.304316380056,"CHH","2:33963112:33965112","CGI_shore"]
[2,34051845,34051972,128,36,0.301919702960642,0.157744610398471,0.144175092562171,198.622814818742,"CHH","2:34050187:34052187","CGI_shore"]
[2,34079871,34079982,112,26,0.131951651330443,0.0547030123964745,0.0772486389339686,131.66925376665,"CHH","2:34079322:34081323","CGI_shore"]
[2,34697472,34697606,135,36,0.136560434699686,0.0561634195007389,0.0803970151989472,166.696945962069,"CHH","2:34697132:34699133","CGI_shore"]
[2,34763001,34763051,51,14,0.118796011505286,0.0195473412090786,0.099248670296207,74.6320218873044,"CHH","2:34717783:34778447","CGI"]
[2,35009996,35010078,83,32,0.316867492350667,0.0716960008561038,0.245171491494563,155.760635765813,"CHH","2:35009614:35011615","CGI_shore"]
[2,35443557,35443736,180,28,0.419506577677906,0.125744770268118,0.293761807409788,184.374253885349,"CHG","Os02g0825301","promoter","F-box protein 122","Hypothetical conserved gene && - && -"]
[2,35443563,35443752,190,61,0.162615183203371,0.0492713590253415,0.113343824178029,368.356121896881,"CHH","Os02g0825301","promoter","F-box protein 122","Hypothetical conserved gene && - && -"]
[2,35444019,35444089,71,26,0.320865693942771,0.195326820353538,0.125538873589233,121.601831069285,"CHH","2:35443876:35445876","CGI_shore"]
[2,35819688,35819993,306,77,0.247318587354218,0.117323121192856,0.129995466161362,410.224476668706,"CHH","2:35819755:35821755","CGI_shore"]
[2,35928898,35929088,191,37,0.619556687621138,0.370166749094715,0.249389938526423,196.105462267352,"CG","Os02g0834800","promoter","Os02g0834800","Hypothetical protein && - && -"]
[3,63053,63260,208,54,0.131314426820038,0.0543295339677539,0.0769848928522842,265.270453458018,"CHH","3:61392:63392","CGI_shore"]
[3,163308,163403,96,20,0.108275446521536,0.0355632259751286,0.0727122205464079,96.7747762794122,"CHH","Os03g0102333","intron","Os03g0102333","Hypothetical conserved gene && sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=cnot1 PE=2 SV=1 && PF12842:Domain of unknown function (DUF3819)|PF16415:CCR4-NOT transcription complex subunit 1 CAF1-binding domain"]
[3,840061,840152,92,20,0.0998214517418798,0.0174687896664933,0.0823526620753865,127.372119193133,"CHH","3:839286:841286","CGI_shore"]
[3,1135033,1135097,65,17,0.470370977920867,0.376298084728905,0.094072893191962,64.1529122635287,"CG","3:1134367:1136367","CGI_shore"]
[3,1280791,1280858,68,16,0.108413628928598,0.022838090468262,0.0855755384603358,97.6261008465426,"CHH","Os03g0122600","intron","MADS BOX GENE 50","MIKC-type MADS-box protein, Flowering activator, Short-day/long-day promotion of flowerin && sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1 && PF01486:K-box region|PF00319:SRF-type transcription factor (DNA-binding and dimerisation domain)"]
[3,1525543,1525708,166,56,0.150447753056407,0.062792330035735,0.0876554230206724,270.714931946495,"CHH","Os03g0127000","utr3","Os03g0127000","Similar to cell growth defect factor 2 && - && -"]
[3,1710939,1711072,134,35,0.141846265001415,0.050087379414618,0.0917588855867966,160.937351402086,"CHH","Os03g0130200","intron","Os03g0130200","Conserved hypothetical protein && sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=AAE12 PE=2 SV=1 && PF00501:AMP-binding enzyme|PF00069:Protein kinase domain"]
[3,1729023,1729126,104,35,0.102995384155002,0.036968742879906,0.0660266412750963,137.047314953498,"CHH","3:1727896:1729897","CGI_shore"]
[3,1820896,1821027,132,60,0.207267107141348,0.109967669397511,0.097299437743837,284.826768581141,"CHH","Os03g0132000","promoter","acyl-CoA synthetase 4","Similar to 4-coumarate-CoA ligase-like protein && sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica OX=39947 GN=4CLL4 PE=2 SV=1 && PF13193:AMP-binding enzyme C-terminal domain|PF00501:AMP-binding enzyme"]
[3,2113495,2113618,124,18,0.544163828875697,0.224567603793443,0.319596225082254,104.803668778606,"CHH","Os03g0138100","promoter","Os03g0138100","Similar to RNA recognition motif family protein, expressed && sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF2 PE=1 SV=4 && -"]
[3,2113495,2113618,124,18,0.544163828875697,0.224567603793443,0.319596225082254,104.803668778606,"CHH","Os03g0138200","promoter","P-450 96B6","Cytochrome P450 family protein && sp|A0A140IL91|C96T2_NARAP Noroxomaritidine synthase 2 OS=Narcissus aff. pseudonarcissus MK-2014 OX=1540222 GN=Cyp96T2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[3,2332883,2333060,178,46,0.18681774276971,0.085277635465957,0.101540107303753,197.388599566265,"CHH","3:2333037:2335037","CGI_shore"]
[3,2792493,2792760,268,31,0.820935021597743,0.48038425835397,0.340550763243773,137.346154525571,"CG","3:2792195:2794195","CGI_shore"]
[3,2792666,2792759,94,5,0.561859137470167,0.0837664111252954,0.478092726344871,28.8768460786825,"CHG","3:2792195:2794195","CGI_shore"]
[3,2956916,2957028,113,24,0.326701092529104,0.0746480147134447,0.252053077815659,108.262143315543,"CHH","3:2954725:2971234","CGI"]
[3,3253396,3253457,62,22,0.379777871209295,0.172472712978856,0.207305158230438,121.169641601556,"CHH","Os03g0161000","exon","Os03g0161000","Conserved hypothetical protein && - && -"]
[3,3314446,3314531,86,16,0.560715828856779,0.280428756974389,0.28028707188239,77.4148808265011,"CHH","3:3312655:3314655","CGI_shore"]
[3,3366779,3366901,123,44,0.101861931361155,0.0317391116292307,0.0701228197319245,212.513641724095,"CHH","3:3366327:3368327","CGI_shore"]
[3,3556681,3556737,57,7,0.231777777675405,0.0594232491340844,0.17235452854132,33.4671093250225,"CG","Os03g0165900","exon","Os03g0165900","Tetratricopeptide-like helical domain containing protein && sp|Q8L730|SDI2_ARATH Protein SULFUR DEFICIENCY-INDUCED 2 OS=Arabidopsis thaliana OX=3702 GN=At1g04770 PE=2 SV=1 && -"]
[3,3637094,3637145,52,13,0.151069545010692,9.24906104050577E-3,0.141820483970187,70.5122003313193,"CHH","Os03g0167400","promoter","Os03g0167400","Protein of unknown function DUF620 family protein && - && PF04788:Protein of unknown function (DUF620)"]
[3,4109898,4110089,192,39,0.227751666539694,0.0787099454238692,0.149041721115825,212.870180724119,"CHH","3:4104990:4109945","CGI"]
[3,4221368,4221512,145,43,0.139848397967905,0.049541146773926,0.0903072511939789,204.992762687606,"CHH","3:4221343:4223344","CGI_shore"]
[3,4350771,4350950,180,37,0.340373881809356,0.185966372424275,0.154407509385081,183.250184288607,"CHH","Os03g0183000","promoter","ETHYLENE RESPONSE FACTOR 62","APETALA2/ethylene-responsive element binding protein 125, Transcription regulator, Positive regulator of grain lengt && sp|Q9LUM4|RAP22_ARATH Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana OX=3702 GN=RAP2-2 PE=1 SV=2 && PF00847:AP2 domain"]
[3,4387471,4387659,189,34,0.238725835546297,0.0862937275226224,0.152432108023675,242.693733210648,"CHH","Os03g0183600","exon","ALANINE AMINOTRANSFERASE 2","Similar to Alanine aminotransferase && sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum OX=4540 PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[3,4481014,4481217,204,61,0.498065188113873,0.282944015722347,0.215121172391526,328.29821846337,"CG","3:4479813:4483526","CGI"]
[3,4642064,4642144,81,17,0.527358033412738,0.313768984596484,0.213589048816255,79.6682847228208,"CHH","3:4641831:4643832","CGI_shore"]
[3,5090679,5090856,178,50,0.0902509309911813,0.027082733992188,0.0631681969989933,234.882078257673,"CHH","Os03g0197000","promoter","Os03g0197000","Di-trans-poly-cis-decaprenylcistransferase-like domain containing protein && sp|Q12063|UPPS_YEAST Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NUS1 PE=1 SV=1 && -"]
[3,5229144,5229410,267,55,0.333871242123935,0.0418347874777525,0.292036454646183,334.871746424908,"CHH","3:5227289:5229290","CGI_shore"]
[3,5336568,5336722,155,38,0.0899228608496646,0.0131601539764047,0.0767627068732598,204.067529746218,"CHH","3:5336397:5338398","CGI_shore"]
[3,5860127,5860321,195,45,0.564382421686248,0.386204032905475,0.178178388780773,231.601697417327,"CHH","3:5859745:5861746","CGI_shore"]
[3,5992548,5992737,190,41,0.0843682974247708,0.0055570912780601,0.0788112061467107,224.873506870445,"CHH","3:5992220:5994221","CGI_shore"]
[3,6074699,6074900,202,40,0.234912508050188,0.0857921923696562,0.149120315680532,185.082051851854,"CHH","3:6074231:6076232","CGI_shore"]
[3,6460398,6460540,143,39,0.216997722549707,0.0947409110787981,0.122256811470909,209.35923394514,"CHH","Os03g0223400","intron","GLUTAMINE SYNTHETASE 1;2","Cytosolic glutamine synthetase, Ammonium assimilatio && sp|P14654|GLN12_ORYSJ Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLN1-2 PE=1 SV=1 && PF00120:Glutamine synthetase, catalytic domain|PF03951:Glutamine synthetase, beta-Grasp domain"]
[3,6619962,6620152,191,65,0.197601775835756,0.0821686178699026,0.115433157965854,297.888602854979,"CHH","3:6608558:6628975","CGI"]
[3,6729516,6729582,67,17,0.32684578057999,0.149226323977003,0.177619456602988,83.8048819575335,"CHH","3:6728846:6730847","CGI_shore"]
[3,6800614,6800863,250,69,0.282778598814164,0.141289505272446,0.141489093541719,351.271615835414,"CHH","3:6799110:6801111","CGI_shore"]
[3,6875814,6875895,82,25,0.29452328514382,0.145596270850679,0.148927014293141,148.53298191829,"CHH","3:6875074:6877074","CGI_shore"]
[3,7142634,7142841,208,56,0.273285182723864,0.118122232366308,0.155162950357556,282.100138657842,"CHH","Os03g0235300","promoter","Os03g0235300","Similar to Peptide transporter PTR2 && sp|P46032|PTR2_ARATH Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1 && PF00854:POT family"]
[3,7531336,7531399,64,17,0.114769487789347,0.00498884655069106,0.109780641238656,86.8536018788743,"CHH","3:7530713:7532714","CGI_shore"]
[3,7631083,7631310,228,82,0.201329182915509,0.055522618168116,0.145806564747393,466.11221561364,"CHH","3:7629577:7631578","CGI_shore"]
[3,7711045,7711157,113,23,0.12905256092431,0.0145442820443341,0.114508278879976,109.640477442678,"CHH","3:7710862:7712863","CGI_shore"]
[3,8002353,8002470,118,28,0.0781865973653627,0.00791181620500267,0.0702747811603601,124.836100330927,"CHH","Os03g0251950","promoter","Os03g0251950","Hypothetical protein && - && -"]
[3,8261714,8261855,142,45,0.184777119250313,0.0501734853625268,0.134603633887787,215.952932951644,"CHH","3:8260177:8265554","CGI"]
[3,8358986,8359038,53,14,0.129921264441042,0.0451407784173397,0.0847804860237028,81.8546381891153,"CHH","3:8358205:8360205","CGI_shore"]
[3,8729099,8729263,165,43,0.0834926085166098,0.0118302609174065,0.0716623475992033,194.931701405344,"CHH","Os03g0264800","promoter","Os03g0264800","Similar to ATPase, AAA family protein, expressed && sp|Q6NU40|CTF18_XENLA Chromosome transmission fidelity protein 18 homolog OS=Xenopus laevis OX=8355 GN=chtf18 PE=2 SV=1 && PF00004:ATPase family associated with various cellular activities (AAA)"]
[3,8787831,8787988,158,45,0.217790995704224,0.0874397005546493,0.130351295149575,231.272828359639,"CHH","Os03g0265800","promoter","Os03g0265800","Protein of unknown function DUF2253, membrane domain containing protein && - && PF06127:Protein of unknown function (DUF962)"]
[3,9095228,9095354,127,39,0.153862253157189,0.0521277057674963,0.101734547389693,242.33921262495,"CHH","3:9094890:9096891","CGI_shore"]
[3,9280737,9280837,101,14,0.256619730728974,0.00816042979290332,0.248459300936071,68.9009649961691,"CHH","3:9276549:9281891","CGI"]
[3,9374562,9374712,151,42,0.32667074286848,0.199279639778064,0.127391103090417,209.776578362391,"CHH","Os03g0276600","intron","Os03g0276600","FMN-binding split barrel-related domain containing protein && - && -"]
[3,9398924,9399113,190,43,0.530694161012318,0.328751982280582,0.201942178731735,258.091339883964,"CHH","3:9398815:9400816","CGI_shore"]
[3,9461311,9461404,94,33,0.120283884189587,0.0372583978252747,0.0830254863643126,181.585528246844,"CHH","3:9460890:9461533","CGI"]
[3,9741351,9741493,143,28,0.194775442555934,0.0726577475103996,0.122117695045534,192.604740963372,"CHH","3:9739575:9741576","CGI_shore"]
[3,9966182,9966350,169,21,0.462349508407075,0.0635288232085915,0.398820685198483,198.78881720921,"CHH","3:9965367:9967367","CGI_shore"]
[3,10085048,10085196,149,34,0.117565295384733,0.0181764943196631,0.0993888010650698,191.634969088771,"CHH","3:10084334:10086334","CGI_shore"]
[3,10125073,10125235,163,29,0.414295734062723,0.0932227734840828,0.32107296057864,176.845576640023,"CHH","3:10123397:10125397","CGI_shore"]
[3,10170004,10170169,166,40,0.155932753963283,0.0372904108129545,0.118642343150329,209.583646994053,"CHH","3:10168453:10170453","CGI_shore"]
[3,10644155,10644285,131,45,0.181033294395689,0.031505069010035,0.149528225385654,248.508427299164,"CG","3:10644098:10648476","CGI"]
[3,10644155,10644285,131,45,0.181033294395689,0.031505069010035,0.149528225385654,248.508427299164,"CG","Os03g0301900","TSS","Os03g0301900","Similar to Plastidic phosphate translocator-like protein1 && sp|Q3E6T0|PT525_ARATH Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana OX=3702 GN=At5g25400 PE=2 SV=1 && -"]
[3,10815116,10815532,417,146,0.173824863033925,0.0745094485556476,0.099315414478277,751.829713704748,"CHH","3:10814304:10816304","CGI_shore"]
[3,11013750,11013837,88,21,0.116944421250897,0.0436582771289185,0.0732861441219781,81.4764394342438,"CHH","3:11013492:11015492","CGI_shore"]
[3,11038355,11038549,195,36,0.121456091924894,0.0110565386761101,0.110399553248784,174.997435441319,"CHH","3:11033728:11040382","CGI"]
[3,11402142,11402255,114,40,0.207253914811633,0.114562975603393,0.0926909392082393,200.714630090108,"CHH","3:11400681:11402681","CGI_shore"]
[3,11620161,11620259,99,49,0.0761018852870763,0.0236458994373886,0.0524559858496877,246.835651540158,"CHH","3:11619379:11621380","CGI_shore"]
[3,11688491,11688699,209,41,0.324859642657915,0.127454848038175,0.19740479461974,224.220740758746,"CHH","3:11687659:11689660","CGI_shore"]
[3,11987624,11987697,74,24,0.23312524723245,0.132788173587302,0.100337073645148,128.830650155856,"CHH","3:11987693:11989694","CGI_shore"]
[3,12046202,12046342,141,30,0.229398923325199,0.0934081887558137,0.135990734569385,165.560778050029,"CHH","3:12044400:12046400","CGI_shore"]
[3,12159603,12159754,152,64,0.239870390053712,0.108775268167401,0.131095121886312,359.132098586451,"CHH","Os03g0330300","promoter","Os03g0330300","Similar to cDNA clone:001-032-H02, full insert sequence (Fragment) && - && -"]
[3,12176949,12177144,196,35,0.198038765090205,0.0296194305525796,0.168419334537626,233.542172229443,"CHH","3:12176824:12177267","CGI"]
[3,12571090,12571233,144,35,0.0925271517477694,0.0159686472587534,0.076558504489016,153.239015280772,"CHH","3:12570166:12572166","CGI_shore"]
[3,12612398,12612489,92,13,0.183050448159602,0.0524692880277896,0.130581160131812,88.9532370372513,"CHH","Os03g0339300","intron","class III peroxidase 41, peroxidase 8.1","Hypothetical conserved gene && sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays OX=4577 GN=PER70 PE=1 SV=1 && PF00141:Peroxidase"]
[3,12651206,12651286,81,23,0.147249253291126,0.0947434805758394,0.0525057727152867,83.9682723905098,"CHH","3:12649707:12651708","CGI_shore"]
[3,12871652,12871750,99,34,0.108860050674792,0.0197745394564342,0.089085511218358,190.219168336943,"CHH","Os03g0345300","exon","Os03g0345300","Similar to Desiccation-related protein Lb_13-62 (Fragment) && sp|P22242|DRPE_CRAPL Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum OX=4153 PE=2 SV=1 && PF13668:Ferritin-like domain"]
[3,13083191,13083263,73,26,0.225458153016158,0.0980405332590056,0.127417619757152,139.657762990767,"CHH","Os03g0348500","promoter","Os03g0348500","Similar to cDNA clone:J033091L01, full insert sequence && sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1 && -"]
[3,13314655,13314789,135,43,0.422675739946841,0.25654661306469,0.166129126882151,219.443464340242,"CHH","3:13314272:13316272","CGI_shore"]
[3,13663202,13663408,207,69,0.343088006908864,0.20002923624597,0.143058770662894,373.076765275526,"CHH","3:13661646:13663646","CGI_shore"]
[3,13748743,13748971,229,74,0.273748464139653,0.128889289367793,0.14485917477186,451.243153413505,"CHH","Os03g0356652","promoter","Os03g0356652","Zinc finger, C2H2-like domain containing protein && - && -"]
[3,13895211,13895500,290,48,0.456423138956687,0.206611712219623,0.249811426737065,315.396129731279,"CG","3:13893617:13895618","CGI_shore"]
[3,14012580,14012632,53,9,0.811671456347986,0.57742560306412,0.234245853283866,38.7202046782941,"CG","3:14010641:14012642","CGI_shore"]
[3,14151827,14151952,126,22,0.218962254697579,0.0913409759047259,0.127621278792853,105.436863518947,"CHH","3:14151860:14153861","CGI_shore"]
[3,14265271,14265366,96,17,0.122453203656397,0.0068735534754813,0.115579650180916,83.5294687714992,"CHH","Os03g0365200","promoter","Os03g0365200","Similar to Ulp1 protease family, C-terminal catalytic domain containing protein && - && -"]
[3,14465188,14465287,100,15,0.793682181146206,0.605160798501715,0.188521382644491,73.6108907943623,"CG","3:14465187:14465424","CGI"]
[3,14566962,14567096,135,24,0.089630329248064,0.0130762111354896,0.0765541181125743,128.640635565224,"CHH","Os03g0371300","promoter","P-450 72A1","Similar to Cytochrome P450 CYP709E4 && sp|F4IK45|C70B2_ARATH Cytochrome P450 709B2 OS=Arabidopsis thaliana OX=3702 GN=CYP709B2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[3,14678361,14678451,91,30,0.145324572123493,0.0635242514257414,0.0818003206977515,141.805572073522,"CHH","Os03g0372900","promoter","F-box protein 146","Cyclin-like F-box domain containing protein && - && PF12937:F-box-like|PF07734:F-box associated"]
[3,14800510,14800659,150,51,0.325230773312818,0.187714390212429,0.137516383100389,247.584598849972,"CHH","3:14799118:14801118","CGI_shore"]
[3,14840674,14840762,89,17,0.242321950740882,0.119754626899438,0.122567323841444,81.0167171925644,"CHH","Os03g0375966","promoter","OsLAT4","Similar to Amino acid permease family protein && sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana OX=3702 GN=At3g13620 PE=2 SV=1 && PF13520:Amino acid permease"]
[3,14841036,14841277,242,86,0.190601039734585,0.072002763772314,0.118598275962271,494.973582834264,"CHH","3:14839231:14841232","CGI_shore"]
[3,15004710,15004841,132,34,0.133190965166602,0.0526431089839486,0.0805478561826531,169.358749702162,"CHH","Os03g0379400","promoter","Os03g0379400","Hypothetical conserved gene && sp|Q8S2G4|GCD1_ORYSJ Protein GAMETE CELL DEFECTIVE 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GCD1 PE=2 SV=1 && -"]
[3,15144242,15144324,83,27,0.247526829225418,0.148084542899245,0.0994422863261735,113.457089496333,"CHH","3:15143696:15145697","CGI_shore"]
[3,15155765,15155905,141,47,0.229555724953404,0.133958339524541,0.0955973854288634,216.790106743528,"CHH","3:15154394:15156395","CGI_shore"]
[3,15219520,15219671,152,57,0.18524806231518,0.0644067123625118,0.120841349952668,338.644371095107,"CHH","3:15219211:15221212","CGI_shore"]
[3,15385724,15385826,103,27,0.0836140490577793,0.0145475622473087,0.0690664868104706,133.650998820179,"CHH","3:15384131:15386131","CGI_shore"]
[3,15588290,15588417,128,36,0.148460354464296,0.0608401167097788,0.0876202377545171,198.941032863314,"CHH","3:15584837:15590587","CGI"]
[3,15683998,15684242,245,87,0.267979550347256,0.126409031741927,0.141570518605329,487.121131737356,"CHH","3:15675774:15685297","CGI"]
[3,15769188,15769362,175,33,0.251393438450453,0.0692973912182045,0.182096047232249,213.264329359335,"CHH","3:15767297:15769298","CGI_shore"]
[3,16000891,16001105,215,79,0.149250776023395,0.0643822163558762,0.0848685596675184,345.361439508951,"CHH","3:16000526:16002527","CGI_shore"]
[3,16060432,16060615,184,51,0.303841204703556,0.0971655954089128,0.206675609294643,320.722686131787,"CHH","Os03g0397400","promoter","Ca(2+)/H(+) EXCHANGER 2","Similar to Low affinity calcium transporter CAX2 (Fragment) && sp|Q5KQN0|CAX2_ORYSJ Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX2 PE=2 SV=2 && PF01699:Sodium/calcium exchanger protein"]
[3,16288733,16288830,98,20,0.323826977327418,0.212157348410718,0.111669628916699,101.687456771829,"CHH","Os03g0401100","intron","Os03g0401100","Similar to Protein kinase domain containing protein, expressed && sp|Q05609|CTR1_ARATH Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana OX=3702 GN=CTR1 PE=1 SV=1 && -"]
[3,16452835,16452908,74,31,0.192581490346656,0.0581547155542403,0.134426774792416,241.75187913854,"CHH","3:16451650:16453651","CGI_shore"]
[3,16668013,16668271,259,75,0.23198475078519,0.0613767411072935,0.170608009677896,489.668403793712,"CHH","3:16666456:16668456","CGI_shore"]
[3,16669420,16669515,96,13,0.540414983267421,0.262981802259407,0.277433181008014,54.0506301444903,"CG","3:16669205:16671206","CGI_shore"]
[3,16748649,16748735,87,19,0.794898632680024,0.487445005286195,0.307453627393829,94.8630716373374,"CG","Os03g0408101","promoter","Os03g0408101","Hypothetical protein && sp|Q9ZUF4|RIPK_ARATH Serine/threonine-protein kinase RIPK OS=Arabidopsis thaliana OX=3702 GN=RIPK PE=1 SV=1 && -"]
[3,16748649,16748735,87,19,0.794898632680024,0.487445005286195,0.307453627393829,94.8630716373374,"CG","3:16747788:16749788","CGI_shore"]
[3,16843933,16844076,144,39,0.214208330596932,0.068704066495164,0.145504264101768,246.130785000168,"CHH","3:16842279:16844280","CGI_shore"]
[3,16998801,16998930,130,30,0.161047403162956,0.0416888889151023,0.119358514247853,149.054767907815,"CHH","3:16997792:16999486","CGI"]
[3,17007080,17007250,171,52,0.256861936719401,0.131241134396377,0.125620802323024,273.644166105763,"CHH","3:17007054:17009055","CGI_shore"]
[3,17173349,17173498,150,27,0.232938944848306,0.0414720814127582,0.191466863435548,156.260642771367,"CHH","Os03g0414400","intron","Os03g0414400","Conserved hypothetical protein && - && -"]
[3,17305317,17305465,149,54,0.269488845259154,0.122992875966929,0.146495969292225,262.781226191443,"CHH","3:17304669:17306670","CGI_shore"]
[3,17345687,17345776,90,24,0.108951543370865,0.0393500708180545,0.0696014725528108,102.000684009613,"CHH","Os03g0417833","promoter","Os03g0417833","Hypothetical gene && sp|Q7Y1L9|SP1L1_ORYSJ Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 PE=3 SV=1 && -"]
[3,17557201,17557460,260,82,0.272617041255906,0.115690457006406,0.1569265842495,435.132055967673,"CHH","3:17556640:17558640","CGI_shore"]
[3,17596049,17596221,173,45,0.203519437891589,0.0366730660189704,0.166846371872619,207.239077306761,"CHH","Os03g0422702","promoter","Os03g0422702","Similar to predicted protein && sp|Q9FTA2|TCP21_ARATH Transcription factor TCP21 OS=Arabidopsis thaliana OX=3702 GN=TCP21 PE=1 SV=1 && PF03634:TCP family transcription factor"]
[3,17596094,17596235,142,40,0.787146913200466,0.55025191288251,0.236895000317956,186.178589391825,"CG","3:17594923:17596924","CGI_shore"]
[3,17628563,17628958,396,138,0.339021576556205,0.20384379872451,0.135177777831695,636.010313771867,"CHH","3:17623750:17629621","CGI"]
[3,17656995,17657056,62,17,0.135814680667706,0.047825255944793,0.0879894247229129,78.0194157404133,"CHH","3:17655079:17657079","CGI_shore"]
[3,17944480,17944590,111,38,0.072719927090627,0.0169542344735192,0.0557656926171077,147.649659085031,"CHH","3:17943572:17944509","CGI"]
[3,18224181,18224273,93,25,0.14426176655078,0.0675354840920648,0.0767262824587157,105.743976802444,"CHH","3:18222737:18224738","CGI_shore"]
[3,18441257,18441419,163,25,0.389989796900448,0.164274366988551,0.225715429911896,134.692305884717,"CHH","3:18439891:18441892","CGI_shore"]
[3,18494949,18495184,236,83,0.107900122317275,0.0415710476252021,0.0663290746920724,456.79452313599,"CHH","3:18493807:18495807","CGI_shore"]
[3,18530646,18530712,67,15,0.815319359719067,0.595603345031891,0.219716014687175,76.5861714377308,"CG","3:18529552:18531553","CGI_shore"]
[3,18720244,18720505,262,78,0.116543838452003,0.0308919893573597,0.0856518490946437,406.758073076194,"CHH","3:18720471:18722471","CGI_shore"]
[3,18944231,18944396,166,44,0.223767471139881,0.11172615279899,0.112041318340891,207.245049269308,"CHH","3:18944364:18946364","CGI_shore"]
[3,19082271,19082324,54,13,0.126228733120687,0.0408738767771188,0.085354856343568,93.6842832115249,"CHH","3:19081939:19083940","CGI_shore"]
[3,19162472,19162655,184,69,0.0974274546471766,0.0435891364307613,0.0538383182164153,288.856050912612,"CHH","3:19162497:19162773","CGI"]
[3,19417970,19418057,88,33,0.213463873163954,0.031971055727625,0.181492817436329,178.699023902873,"CHH","Os03g0452300","promoter","Os03g0452300","Ribosomal protein S5, bacterial-type domain containing protein && sp|Q9ST69|RR5_SPIOL 30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=1 SV=1 && PF03719:Ribosomal protein S5, C-terminal domain|PF00333:Ribosomal protein S5, N-terminal domain"]
[3,19665824,19665899,76,11,0.869382727383315,0.51602226566495,0.353360461718366,47.3548891490105,"CG","3:19664662:19666662","CGI_shore"]
[3,19913642,19913845,204,44,0.17622992652952,0.025861132030683,0.150368794498837,244.347829425273,"CHH","3:19913483:19915483","CGI_shore"]
[3,20244692,20244893,202,48,0.256990591019391,0.127450254920916,0.129540336098475,223.424562728248,"CG","Os03g0563200","exon","Os03g0563200","Hypothetical conserved gene && - && -"]
[3,20353182,20354265,1084,64,0.193287728535271,0.0449347794906213,0.14835294904465,432.541886493489,"CHH","3:20354129:20354439","CGI"]
[3,20473365,20473457,93,31,0.124321717294054,0.051620386118838,0.0727013311752158,117.904219070433,"CHH","3:20472937:20474937","CGI_shore"]
[3,20552676,20552970,295,82,0.231035504746259,0.0747709087508237,0.156264595995436,480.956789356957,"CHH","3:20552427:20553052","CGI"]
[3,20555524,20555658,135,34,0.262415783769031,0.119963319139454,0.142452464629577,194.636919405859,"CHH","Os03g0568400","intron","Os03g0568400","Similar to Cytochrome P450 family protein && sp|O48958|C71E1_SORBI 4-hydroxyphenylacetaldehyde oxime monooxygenase OS=Sorghum bicolor OX=4558 GN=CYP71E1 PE=1 SV=1 && PF00067:Cytochrome P450"]
[3,20669001,20669200,200,60,0.327110835604908,0.158793970419053,0.168316865185856,381.746405399821,"CHH","3:20667662:20669662","CGI_shore"]
[3,20770560,20770660,101,23,0.166638160362847,0.0341363987188575,0.13250176164399,143.009785992217,"CHG","3:20769705:20771706","CGI_shore"]
[3,20808812,20808972,161,48,0.0700856724278409,0.0315939073425501,0.0384917650852908,248.979442410388,"CHH","3:20807551:20809551","CGI_shore"]
[3,20979101,20979152,52,7,0.635736324744996,0.381250685283513,0.254485639461484,31.5238571496904,"CHG","Os03g0574900","exon","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 27","Similar to Potassium transporter && sp|Q84MS4|HAK27_ORYSJ Potassium transporter 27 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK27 PE=2 SV=1 && PF02705:K+ potassium transporter"]
[3,21253238,21253455,218,84,0.274745391085342,0.047391251355525,0.227354139729817,762.199036769261,"CHH","3:21242046:21262798","CGI"]
[3,21298749,21298816,68,18,0.214788741069039,0.100307438043481,0.114481303025557,81.961831225222,"CHH","3:21298503:21300503","CGI_shore"]
[3,21330518,21330645,128,32,0.0954637307317786,0.0366757556758226,0.058787975055956,137.822836025949,"CHH","3:21330480:21332480","CGI_shore"]
[3,21376912,21377017,106,17,0.378459580451209,0.145827834375256,0.232631746075953,81.1696406617011,"CHH","3:21376384:21378414","CGI"]
[3,21463261,21463386,126,11,0.734143053375054,0.0964093814639152,0.637733671911139,82.6089491027974,"CG","3:21461280:21463280","CGI_shore"]
[3,21611020,21611220,201,58,0.222414438578926,0.00828586804664646,0.214128570532279,397.264271462354,"CHH","3:21607297:21613097","CGI"]
[3,21964776,21964994,219,72,0.146599052843157,0.0460581818297661,0.100540871013391,428.792834294855,"CHH","3:21964619:21966620","CGI_shore"]
[3,22042171,22042360,190,72,0.190530549315313,0.0850297292862529,0.105500820029061,438.996141440062,"CHH","3:22041802:22043803","CGI_shore"]
[3,22085441,22085655,215,73,0.0638031149109174,0.0180752333872305,0.0457278815236869,336.021839270321,"CHH","3:22084888:22086888","CGI_shore"]
[3,22165175,22165246,72,17,0.119991136294515,0.0415462106927537,0.0784449256017613,74.1712456642025,"CHH","Os03g0595800","utr3","Os03g0595800","Similar to Acyl carrier protein (ACP) && sp|Q9FGJ4|ACPM3_ARATH Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP2 PE=1 SV=1 && -"]
[3,22239559,22239643,85,29,0.134353091575684,0.0483343505800671,0.0860187409956172,137.206055079153,"CHH","3:22238208:22240067","CGI"]
[3,22257350,22257491,142,36,0.808567443454046,0.556617443809803,0.251949999644243,205.918634617223,"CG","3:22255842:22257843","CGI_shore"]
[3,22307042,22307232,191,76,0.161523456625308,0.0221087646745368,0.139414691950771,406.59021720484,"CHH","3:22307023:22308167","CGI"]
[3,22515929,22515983,55,20,0.0864414901802558,0.0259954591408264,0.0604460310394293,89.9367557181969,"CHH","3:22515716:22517717","CGI_shore"]
[3,22651726,22651877,152,23,0.205888958327937,0.0312745264652231,0.174614431862714,168.434648309533,"CHH","Os03g0604401","promoter","Os03g0604401","Similar to CBL-interacting protein kinase 14 && sp|Q6ERS0|CIPKR_ORYSJ Putative CBL-interacting protein kinase 27 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK27 PE=3 SV=1 && PF03822:NAF domain"]
[3,22786771,22786891,121,44,0.115990038062981,0.0538220827817281,0.0621679552812527,222.703717686663,"CHH","3:22786442:22788443","CGI_shore"]
[3,22849912,22849998,87,26,0.399223694751329,0.272974922397016,0.126248772354312,119.190976268458,"CHH","3:22849223:22851223","CGI_shore"]
[3,23005882,23005939,58,16,0.171336035028661,0.0564037461786651,0.114932288849995,93.4193440509495,"CHH","3:23005722:23007722","CGI_shore"]
[3,23064647,23064713,67,21,0.309147412647286,0.116661104742098,0.192486307905187,112.821553790776,"CHH","Os03g0610800","intron","Serpin-ZXB","Similar to Protein zx && sp|Q10GX0|SPZXB_ORYSJ Serpin-ZXB OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0610800 PE=2 SV=1 && PF00079:Serpin (serine protease inhibitor)"]
[3,23399422,23399526,105,36,0.279556474613868,0.177823175915998,0.10173329869787,158.556632944408,"CHH","3:23398144:23400144","CGI_shore"]
[3,23609104,23609155,52,23,0.0580716361066984,0.0176510316619975,0.0404206044447009,109.53492543975,"CHH","Os03g0622100","promoter","Os03g0622100","Transcriptional factor B3 family protein && sp|Q10GM4|Y3221_ORYSJ B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622100 PE=2 SV=1 && PF02362:B3 DNA binding domain"]
[3,23784510,23784715,206,56,0.328631276885579,0.189190194657258,0.139441082228321,266.262749301375,"CHH","3:23784289:23786290","CGI_shore"]
[3,23897704,23897884,181,36,0.396422220967997,0.248045663473484,0.148376557494513,157.099976899433,"CHH","3:23896788:23898789","CGI_shore"]
[3,23897704,23897884,181,36,0.396422220967997,0.248045663473484,0.148376557494513,157.099976899433,"CHH","3:23897393:23899393","CGI_shore"]
[3,24296015,24296067,53,18,0.273877884978454,0.140732596207002,0.133145288771452,101.219627101268,"CHH","3:24295507:24297508","CGI_shore"]
[3,24722835,24722940,106,24,0.254670036347904,0.104192990164596,0.150477046183308,131.136294132355,"CHH","Os03g0641500","exon","type X non-specific lipid transfer protein 1, non-specific lipid transfer protein x1, lipid transfer protein x1","Plant lipid transfer protein/hydrophobic protein, helical domain domain containing protein && - && -"]
[3,24722835,24722940,106,24,0.254670036347904,0.104192990164596,0.150477046183308,131.136294132355,"CHH","Os03g0641500","utr3","type X non-specific lipid transfer protein 1, non-specific lipid transfer protein x1, lipid transfer protein x1","Plant lipid transfer protein/hydrophobic protein, helical domain domain containing protein && - && -"]
[3,24924182,24924485,304,62,0.404735705441798,0.214380334937202,0.190355370504596,341.809590891215,"CHH","3:24923709:24924254","CGI"]
[3,25128759,25128904,146,45,0.104435874903924,0.0368058132059196,0.0676300616980044,229.30832095355,"CHH","Os03g0648400","intron","DnaJ domain protein A4, YDJ1 protein","Similar to DnaJ protein && sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 OS=Atriplex nummularia OX=3553 PE=2 SV=1 && PF01556:DnaJ C terminal domain|PF00226:DnaJ domain|PF00684:DnaJ central domain"]
[3,25133617,25133813,197,27,0.20565714409726,0.0314439721917874,0.174213171905472,166.717707524118,"CHH","3:25131808:25133809","CGI_shore"]
[3,25286927,25287117,191,71,0.178256948558354,0.0615961900129631,0.116660758545391,369.814141650597,"CHH","3:25286491:25288492","CGI_shore"]
[3,25293483,25293670,188,57,0.282035389643854,0.118524988345711,0.163510401298143,286.206579382426,"CHH","Os03g0651201","exon","Os03g0651201","Hypothetical protein && - && -"]
[3,25478868,25478928,61,11,0.615746148817284,0.33518634981219,0.280559799005094,50.4726946812113,"CG","3:25477179:25479180","CGI_shore"]
[3,25790159,25790362,204,65,0.223143237125516,8.95841909409862E-3,0.214184818031418,392.673824250463,"CHH","3:25789892:25791893","CGI_shore"]
[3,25874348,25874478,131,35,0.0691390043069454,0.0197865901007689,0.0493524142061765,155.071019746551,"CHH","3:25872857:25874858","CGI_shore"]
[3,26169191,26169377,187,40,0.374394054377386,0.0975361526666523,0.276857901710734,238.122199043502,"CHH","3:26168435:26170435","CGI_shore"]
[3,26422799,26422966,168,43,0.314247825316449,0.192008162173809,0.12223966314264,203.497418503134,"CHH","3:26421723:26423723","CGI_shore"]
[3,26580065,26580139,75,16,0.102451043979664,0.0390776793206015,0.0633733646590621,69.9116937720784,"CHH","3:26579048:26581049","CGI_shore"]
[3,26743323,26743649,327,61,0.322179675681493,0.0552751727618591,0.266904502919634,477.080519453118,"CHH","3:26743172:26745173","CGI_shore"]
[3,26919193,26919300,108,50,0.247054568254377,0.139586080321644,0.107468487932733,239.480360049137,"CHH","Os03g0679300","intron","Os03g0679300","Similar to Ubiquitin-conjugating enzyme family protein, expressed && sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 && -"]
[3,27039155,27039466,312,107,0.193466255721055,0.107621728201719,0.0858445275193357,480.248494644186,"CHH","Os03g0680566","intron","Os03g0680566","Tetratricopeptide TPR-1 domain containing protein && - && PF12796:Ankyrin repeats (3 copies)|PF13637:Ankyrin repeats (many copies)"]
[3,27433181,27433327,147,44,0.109207462866474,0.0480698959622606,0.0611375669042132,258.178883485049,"CHH","Os03g0687200","intron","Os03g0687200","Conserved hypothetical protein && - && -"]
[3,27701573,27701699,127,38,0.113809566692194,0.0321911886728707,0.0816183780193237,184.555339583552,"CHH","Os03g0692350","promoter","Os03g0692350","Hypothetical protein && sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum OX=44689 GN=sec61a PE=3 SV=1 && -"]
[3,27701981,27702072,92,26,0.18841909494785,0.0538906004419738,0.134528494505877,151.389520430741,"CHH","Os03g0692350","promoter","Os03g0692350","Hypothetical protein && sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum OX=44689 GN=sec61a PE=3 SV=1 && -"]
[3,27733359,27733578,220,78,0.157246864377849,0.0604732013900385,0.0967736629878101,375.112049641813,"CHH","3:27732736:27733543","CGI"]
[3,27785327,27785496,170,20,0.262583944402381,0.0836543201744456,0.178929624227935,103.95313817422,"CHH","Os03g0693800","promoter","OXALATE OXIDASE 2","Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin) && sp|Q851J9|GL34_ORYSJ Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0693800 PE=3 SV=1 && PF00190:Cupin"]
[3,28115194,28115310,117,39,0.0718109982746689,0.0317688802886121,0.0400421179860568,168.675092000427,"CHH","Os03g0700800","promoter","Os03g0700800","Similar to EIN2 && sp|Q0D8I9|EIN2_ORYSJ Protein ETHYLENE-INSENSITIVE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=EIN2 PE=2 SV=1 && PF01566:Natural resistance-associated macrophage protein"]
[3,28547290,28547516,227,58,0.352066145517217,0.0890332322291385,0.263032913288078,378.683650340928,"CHH","Os03g0708000","promoter","PLA2-III","Phospholipase A2 family protein && sp|Q10E50|PLA23_ORYSJ Phospholipase A2 homolog 3 OS=Oryza sativa subsp. japonica OX=39947 GN=PLA2-III PE=1 SV=1 && -"]
[3,28669016,28669343,328,68,0.324716234484269,0.0925938025220382,0.232122431962231,427.862627800802,"CHH","Os03g0710900","promoter","Os03g0710900","Similar to CCAAT displacement protein-related / CDP-related && sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana OX=3702 GN=CASP PE=1 SV=2 && PF08172:CASP C terminal"]
[3,28782572,28782816,245,66,0.259389237816855,0.124959325191084,0.13442991262577,321.338674768341,"CHH","Os03g0712300","intron","Os03g0712300","Similar to CROC-1-like protein (Fragment) && sp|Q93YP0|UEV1A_ARATH Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1 && PF00179:Ubiquitin-conjugating enzyme"]
[3,28863241,28863312,72,15,0.32672276727092,0.0970397168753322,0.229683050395587,117.360198034118,"CHH","3:28862910:28864911","CGI_shore"]
[3,29085547,29085688,142,29,0.272768240787053,0.091371191154034,0.181397049633019,203.066399312844,"CHH","3:29085392:29087392","CGI_shore"]
[3,29241375,29241465,91,21,0.249744694077212,0.0760992493177137,0.173645444759498,105.695949730741,"CHH","3:29240891:29242892","CGI_shore"]
[3,29316682,29316858,177,53,0.176098053851154,0.0623363534619431,0.113761700389211,316.411635585366,"CHH","Os03g0722600","intron","Os03g0722600","Adenylate cyclase-associated CAP domain containing protein && sp|O65902|ACAP1_ARATH Cyclase-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=CAP1 PE=2 SV=1 && PF08603:Adenylate cyclase associated (CAP) C terminal|PF01213:Adenylate cyclase associated (CAP) N terminal"]
[3,29365908,29366115,208,38,0.261765909264481,0.0293533739043945,0.232412535360087,267.222160910993,"CHH","3:29352364:29372578","CGI"]
[3,29406670,29406754,85,21,0.147529142887422,0.0493369669449652,0.0981921759424569,91.37303175264,"CHH","3:29406247:29408247","CGI_shore"]
[3,29710210,29710293,84,11,0.630517455682078,0.178606500583033,0.451910955099045,62.6475039581305,"CHG","Os03g0727900","intron","Os03g0727900","GTP1/OBG domain containing protein && sp|Q0WTB4|Y3725_ARATH GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g49725 PE=2 SV=2 && PF16360:GTP-binding GTPase Middle Region|PF01926:50S ribosome-binding GTPase|PF13167:GTP-binding GTPase N-terminal"]
[3,29764744,29765140,397,141,0.203056354441393,0.106238918677738,0.0968174357636543,695.226756012253,"CHH","3:29763150:29765151","CGI_shore"]
[3,29848205,29848332,128,38,0.36753269949439,0.154899212676948,0.212633486817443,218.551675489642,"CG","Os03g0730000","promoter","Os03g0730000","Lecithin:cholesterol acyltransferase family protein && sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana OX=3702 GN=LCAT1 PE=2 SV=1 && PF02450:Lecithin:cholesterol acyltransferase"]
[3,29975812,29976019,208,62,0.118693466867195,0.0283721992855423,0.0903212675816531,342.58783669809,"CHH","3:29974950:29976951","CGI_shore"]
[3,29977433,29977545,113,36,0.0565839967605146,0.0297416251344265,0.0268423716260881,172.53520825582,"CHH","3:29977488:29978340","CGI"]
[3,30106012,30106176,165,58,0.122120444259294,0.0526069502230607,0.069513494036233,249.510032586736,"CHH","Os03g0735000","promoter","ADP-GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1","Similar to Glucose-1-phosphate adenylyltransferase large subunit 2 (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPASE S) (Alpha-D-glucose-1-phosphate adenyl transferase) (BLPL) (Fragment) && sp|Q6AVT2|GLGL1_ORYSJ Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica OX=39947 GN=AGPL1 PE=1 SV=1 && PF00483:Nucleotidyl transferase"]
[3,30355892,30355992,101,39,0.0744875493839875,0.0286938602222368,0.0457936891617507,127.867367220111,"CG","3:30342832:30356468","CGI"]
[3,30519623,30519685,63,8,0.436173440849707,0.192772052365042,0.243401388484665,38.3211398169413,"CG","Os03g0743500","exon","CALMODULIN-LIKE PROTEIN 4","Calcium-binding EF-hand domain containing protein && sp|Q84MN0|CML4_ORYSJ Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=CML4 PE=2 SV=1 && -"]
[3,30519623,30519685,63,8,0.436173440849707,0.192772052365042,0.243401388484665,38.3211398169413,"CG","Os03g0743650","TES","Os03g0743650","Conserved hypothetical protein && sp|Q7Y1C8|KN14G_ORYSJ Kinesin-like protein KIN-14G OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14G PE=2 SV=2 && -"]
[3,30758404,30758546,143,19,0.216637995338874,0.044582731597161,0.172055263741713,122.322742472319,"CHH","3:30757587:30759588","CGI_shore"]
[3,31306340,31306409,70,23,0.0820476647173236,0.00482870115684815,0.0772189635604754,102.783212475465,"CHH","3:31304504:31307715","CGI"]
[3,31320495,31320664,170,38,0.195898727535985,0.0267357571554932,0.169162970380492,224.741641895733,"CHH","3:31319771:31321772","CGI_shore"]
[3,31687358,31687419,62,21,0.233376473356969,0.0972831869937738,0.136093286363195,103.121007717222,"CHH","3:31686254:31688254","CGI_shore"]
[3,32051137,32051353,217,43,0.249943242085339,0.0966462128875352,0.153297029197804,228.173569969721,"CHH","3:32050752:32052753","CGI_shore"]
[3,32088674,32088810,137,8,0.788351962615227,0.410294016820719,0.378057945794508,40.0923250269593,"CHG","Os03g0773800","intron","Os03g0773800","Similar to Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) (mbNAD-MDH) && sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0632700 PE=1 SV=3 && PF00056:lactate/malate dehydrogenase, NAD binding domain|PF02866:lactate/malate dehydrogenase, alpha/beta C-terminal domain"]
[3,32453741,32453855,115,19,0.326889959388363,0.0909561917204831,0.23593376766788,118.369521944354,"CHH","Os03g0783051","promoter","Os03g0783051","Conserved hypothetical protein && - && -"]
[3,32665764,32665815,52,21,0.067595974564122,4.71041030278026E-3,0.0628855642613417,113.250283008152,"CHH","Os03g0786700","promoter","Os03g0786700","N2,N2-dimethylguanosine tRNA methyltransferase family protein && sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=At5g15810 PE=2 SV=3 && PF02005:N2,N2-dimethylguanosine tRNA methyltransferase"]
[3,32714630,32714687,58,7,0.108703316938187,0.0272181552483325,0.0814851616898542,34.2729715805507,"CG","Os03g0787500","promoter","Os03g0787500","Hypothetical conserved gene && - && -"]
[3,32841899,32842025,127,38,0.253147085753456,0.13983661897114,0.113310466782316,185.528756999683,"CHH","3:32840488:32842488","CGI_shore"]
[3,32895055,32895255,201,51,0.284198269335528,0.104885299575498,0.17931296976003,253.649168401402,"CHH","3:32893276:32895277","CGI_shore"]
[3,32960167,32960230,64,32,0.0757577001871412,0.025278093052966,0.0504796071341752,145.208693589667,"CHH","3:32960165:32962166","CGI_shore"]
[3,33072529,33072766,238,58,0.0837291437317731,0.0245360758000999,0.0591930679316732,285.149117367649,"CHH","3:33071887:33073887","CGI_shore"]
[3,33757000,33757135,136,44,0.163077536695704,0.0210663213000776,0.142011215395626,311.666343884555,"CHH","3:33755892:33757893","CGI_shore"]
[3,33976641,33976808,168,39,0.166240092069778,0.0410388105079061,0.125201281561872,184.67245148162,"CHH","3:33975199:33977200","CGI_shore"]
[3,34383161,34383229,69,31,0.222389420564137,0.10238858231817,0.120000838245967,149.574196495151,"CHH","Os03g0819300","exon","Os03g0819300","Similar to Annexin A7 (Annexin VII) (Synexin) (Fragment) && - && -"]
[3,34581599,34581810,212,58,0.218142712100704,0.114300705045418,0.103842007055287,246.417884033704,"CHH","3:34580617:34582618","CGI_shore"]
[3,35330356,35330537,182,65,0.0661802063457447,0.00279440263604155,0.0633858037097032,406.060737174442,"CHH","3:35327270:35334142","CGI"]
[3,35510907,35510960,54,23,0.661610263582751,0.536356385565426,0.125253878017325,107.410886342806,"CHH","3:35509101:35511101","CGI_shore"]
[3,35679292,35679353,62,20,0.0714807819406504,0.0214060582336613,0.0500747237069891,91.6507982250327,"CHH","3:35678502:35680503","CGI_shore"]
[3,36101833,36102025,193,49,0.116923295032838,0.0261203156411211,0.090802979391717,230.643515800152,"CHH","Os03g0856000","promoter","Os03g0856000","2OG-Fe(II) oxygenase domain containing protein && sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica OX=3442 GN=NCS1 PE=1 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[3,36166053,36166156,104,40,0.118742591105389,0.0150805876523214,0.103662003453067,235.556770761249,"CHH","3:36164963:36166964","CGI_shore"]
[3,36290321,36290494,174,55,0.116173701504604,0.0262431073550603,0.0899305941495434,325.001304844509,"CHH","Os03g0859900","promoter","Os03g0859900","Protein of unknown function DUF547 domain containing protein && - && -"]
[3,36413588,36413679,92,36,0.234826807002072,0.118476606960272,0.1163502000418,208.330072467134,"CHH","Target=(TTAGGG)n:1-353;Class=Simple_repeat","repeat"]
[4,87663,87836,174,78,0.388230114272226,0.0845990582282555,0.30363105604397,635.117957878955,"CHH","4:86546:88547","CGI_shore"]
[4,317608,317662,55,14,0.431064312013581,0.178440991029512,0.25262332098407,92.3417460916194,"CHH","4:317230:319231","CGI_shore"]
[4,368628,368771,144,53,0.135182024775923,0.0343632797137089,0.100818745062214,261.002165515034,"CHH","4:367895:368657","CGI"]
[4,463387,463506,120,23,0.148831009129453,0.0388866595446102,0.109944349584843,109.233515848008,"CHH","Os04g0107600","promoter","ARGININE DECARBOXYLASE 2","Arginine decarboxylase , Stress respons && sp|Q7XRA1|ADC2_ORYSJ Arginine decarboxylase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ADC2 PE=1 SV=2 && PF02784:Pyridoxal-dependent decarboxylase, pyridoxal binding domain"]
[4,554535,554696,162,33,0.268207262497503,0.142284198449114,0.12592306404839,161.808956244642,"CHH","Os04g0109100","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 125","Concanavalin A-like lectin/glucanase domain containing protein && sp|Q9FG33|LRKS5_ARATH Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana OX=3702 GN=LECRKS5 PE=2 SV=1 && PF00139:Legume lectin domain|PF07714:Protein tyrosine kinase"]
[4,571008,571152,145,40,0.213172004262364,0.0983482074083288,0.114823796854035,197.29465716336,"CHH","Os04g0109500","promoter","Os04g0109500","Legume lectin, beta domain containing protein && - && PF00139:Legume lectin domain"]
[4,810478,810675,198,49,0.173009363540978,0.0365461809661728,0.136463182574805,281.645160817342,"CHH","4:809252:811252","CGI_shore"]
[4,843283,843738,456,122,0.176749634969983,0.0787790075703306,0.0979706273996524,588.26747291013,"CHH","4:842736:844736","CGI_shore"]
[4,980998,981117,120,29,0.154316524709029,0.0471052582270806,0.107211266481949,116.723653862218,"CHH","4:980568:982569","CGI_shore"]
[4,1198807,1198870,64,14,0.277955135141553,0.0890726903505525,0.188882444791,77.3392008962289,"CHH","4:1197774:1199775","CGI_shore"]
[4,1199480,1199577,98,20,0.119661692121169,0.0239013810695096,0.095760311051659,121.032404971289,"CHH","4:1199151:1201151","CGI_shore"]
[4,1412172,1412258,87,13,0.62244956210722,0.359727524746085,0.262722037361135,52.3417005265272,"CG","4:1412171:1412399","CGI"]
[4,1730722,1730812,91,34,0.0917168462816294,0.00907667133802499,0.0826401749436045,174.394423774074,"CHH","4:1730650:1732651","CGI_shore"]
[4,1977806,1978006,201,51,0.168900470304472,0.0670843989182218,0.10181607138625,303.569849881555,"CHH","Os04g0131850","intron","Os04g0131850","Similar to UDP-glucose:sterol glucosyltransferase && sp|Q9M8Z7|U80A2_ARATH Sterol 3-beta-glucosyltransferase UGT80A2 OS=Arabidopsis thaliana OX=3702 GN=UGT80A2 PE=1 SV=1 && -"]
[4,2037762,2037847,86,20,0.0769871991922898,0.00767249065200898,0.0693147085402808,94.3171085262103,"CHH","Os04g0132500","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 127","Protein kinase, core domain containing protein && sp|Q9LHP4|RGI1_ARATH LRR receptor-like serine/threonine-protein kinase RGI1 OS=Arabidopsis thaliana OX=3702 GN=RGI1 PE=1 SV=1 && -"]
[4,2521612,2521909,298,5,0.477933311159208,0.127627252685245,0.350306058473962,27.0405794183694,"CHG","4:2521645:2521860","CGI"]
[4,2521969,2522055,87,4,0.519999513169022,0.0692582547823574,0.450741258386665,20.9172176867461,"CHG","4:2521860:2523861","CGI_shore"]
[4,2799783,2799884,102,33,0.0712215241951498,0.0137448431779976,0.0574766810171523,189.424889244947,"CHH","4:2798317:2800317","CGI_shore"]
[4,3264233,3264359,127,25,0.0832673287565539,0.0330405912028137,0.0502267375537401,103.812798008073,"CHH","4:3262484:3264484","CGI_shore"]
[4,3408801,3408856,56,10,0.367675158794852,0.11110248142544,0.256572677369412,58.914274022706,"CHG","4:3407745:3409745","CGI_shore"]
[4,3788758,3788895,138,35,0.102690855879463,0.0177371944067188,0.0849536614727441,155.535073341398,"CHH","4:3788145:3790146","CGI_shore"]
[4,4107089,4107206,118,24,0.809656490439195,0.474449339347113,0.335207151092082,112.687042134113,"CG","4:4100620:4111256","CGI"]
[4,4107689,4107786,98,13,0.631591781997543,0.291122934388497,0.340468847609046,60.4260810662061,"CHG","4:4100620:4111256","CGI"]
[4,4229412,4229833,422,125,0.197218082917526,0.103190835695903,0.0940272472216225,611.009996139674,"CHH","4:4228933:4230934","CGI_shore"]
[4,4274613,4274758,146,57,0.113262324887141,0.0495866303899444,0.0636756944971963,261.655199184489,"CHH","4:4273782:4275783","CGI_shore"]
[4,4274613,4274758,146,57,0.113262324887141,0.0495866303899444,0.0636756944971963,261.655199184489,"CHH","4:4274285:4275447","CGI"]
[4,4495290,4495443,154,42,0.164735987521156,0.0658510470157974,0.0988849405053581,201.196585338454,"CHH","4:4495044:4497044","CGI_shore"]
[4,4965584,4965975,392,71,0.388982958522499,0.246323289772123,0.142659668750375,438.837804526169,"CG","Os04g0173300","exon","Os04g0173300","Hypothetical gene && - && -"]
[4,4990770,4990944,175,60,0.24861867719028,0.135639824287254,0.112978852903026,429.140547354658,"CHH","4:4988909:4990910","CGI_shore"]
[4,5327170,5327253,84,20,0.864989906336058,0.609571821155017,0.255418085181041,84.6060723106348,"CG","4:5327169:5328525","CGI"]
[4,5642767,5642973,207,59,0.132183849289118,0.0189340156111982,0.113249833677919,318.902152041123,"CHH","4:5642943:5644943","CGI_shore"]
[4,5667312,5667478,167,40,0.270483516694099,0.0979969404384211,0.172486576255678,198.923261809731,"CHH","4:5667069:5669070","CGI_shore"]
[4,5703142,5703342,201,60,0.226680331547513,0.112854383786126,0.113825947761387,296.689076218964,"CHH","4:5703111:5705112","CGI_shore"]
[4,6399364,6399462,99,32,0.080674828060951,0.0160607793493115,0.0646140487116395,130.875518827372,"CHH","4:6399320:6400058","CGI"]
[4,6399364,6399462,99,32,0.080674828060951,0.0160607793493115,0.0646140487116395,130.875518827372,"CHH","4:6399355:6401355","CGI_shore"]
[4,6566505,6566688,184,45,0.2056619657344,0.0797199535827125,0.125942012151687,225.844647041853,"CHH","4:6565450:6567451","CGI_shore"]
[4,6629367,6629459,93,27,0.120953033807041,0.033827038486651,0.0871259953203897,148.187239156073,"CHH","4:6628016:6630016","CGI_shore"]
[4,6708952,6709147,196,59,0.274806450707632,0.141225622410383,0.133580828297249,299.138729254757,"CHH","4:6707362:6709362","CGI_shore"]
[4,6945640,6945811,172,59,0.307346829515724,0.178205760025928,0.129141069489796,301.379480148099,"CHH","4:6943930:6945931","CGI_shore"]
[4,7154113,7154224,112,28,0.0724353457869644,0.0242474470330156,0.0481878987539488,148.6089390871,"CHH","Os04g0206450","promoter","Os04g0206450","Similar to cDNA clone:002-100-D12, full insert sequence && sp|Q7XT97|UGT79_ORYSJ UDP-glycosyltransferase 79 OS=Oryza sativa subsp. japonica OX=39947 GN=UGT79 PE=1 SV=2 && -"]
[4,7221606,7221700,95,11,0.387078686245567,0.192639489823196,0.194439196422372,50.4760391303141,"CHG","4:7220151:7222151","CGI_shore"]
[4,7256905,7256985,81,13,0.485166471797334,0.303482635780723,0.181683836016611,89.1183422220352,"CG","Os04g0208450","promoter","Os04g0208450","Hypothetical gene && - && -"]
[4,7314526,7314589,64,17,0.262357005722044,0.112272618619852,0.150084387102191,71.6994244283463,"CHH","4:7313211:7315212","CGI_shore"]
[4,7381494,7381696,203,62,0.158088114413096,0.0480281564686866,0.110059957944409,352.014761483759,"CHH","4:7381094:7383095","CGI_shore"]
[4,7493315,7493612,298,71,0.425993357824269,0.270538662158732,0.155454695665537,413.296663609348,"CG","Os04g0211900","exon","Os04g0211900","Protein of unknown function DUF1677, Oryza sativa family protein && - && PF07893:Protein of unknown function (DUF1668)"]
[4,7495470,7495646,177,60,0.20938829121759,0.112989686801958,0.0963986044156317,288.314151730503,"CHH","4:7494067:7496068","CGI_shore"]
[4,7620855,7620974,120,43,0.0678626633005881,0.0263779167491936,0.0414847465513944,191.622413447661,"CHH","4:7619104:7621105","CGI_shore"]
[4,7805128,7805215,88,25,0.227989049442002,0.101218798998197,0.126770250443805,112.913555357719,"CHH","4:7804750:7805721","CGI"]
[4,7868680,7868801,122,44,0.361798066707292,0.245938517949522,0.11585954875777,201.208362544614,"CHH","Os04g0217500","promoter","Os04g0217500","Hypothetical conserved gene && - && -"]
[4,7880911,7880977,67,10,0.393730569204586,0.0731369855289899,0.320593583675596,58.2401354626547,"CHG","Os04g0217900","utr5","Os04g0217900","Similar to TRAF-type zinc finger family protein && - && -"]
[4,7887758,7887883,126,42,0.174896775793535,0.086576297539045,0.0883204782544899,199.151646801647,"CHH","4:7887432:7887764","CGI"]
[4,7953860,7953925,66,21,0.150420666060873,0.0747117802486805,0.0757088858121926,93.2842405721918,"CHH","4:7953727:7954061","CGI"]
[4,8001408,8001484,77,24,0.262946916606292,0.157789429065958,0.105157487540335,109.409136729925,"CHH","4:7999738:8001738","CGI_shore"]
[4,8016598,8016698,101,42,0.264098328628866,0.161555222780789,0.102543105848077,210.425434040633,"CHH","4:8015863:8017864","CGI_shore"]
[4,8074226,8074390,165,54,0.141243916336457,0.0655731142355234,0.0756708021009332,258.042940191585,"CHH","Os04g0221000","promoter","Os04g0221000","Conserved hypothetical protein && - && -"]
[4,8096141,8096207,67,13,0.820573789730651,0.711904809359382,0.108668980371268,57.9280412135625,"CG","4:8094262:8096774","CGI"]
[4,8102777,8103011,235,50,0.165592142885811,0.0986448121277697,0.0669473307580414,205.168775071907,"CHH","4:8101998:8103998","CGI_shore"]
[4,8149173,8149319,147,36,0.277236868467393,0.0457219259296111,0.231514942537782,226.785943133283,"CHH","4:8148952:8149446","CGI"]
[4,8209353,8209439,87,20,0.144901863631639,0.033833856269739,0.1110680073619,104.926410009275,"CHH","4:8209092:8211092","CGI_shore"]
[4,8242250,8242324,75,20,0.310554953760013,0.189866052533685,0.120688901226329,90.3716359574663,"CHH","Os04g0223300","promoter","ASCORBATE PEROXIDASE 3","Similar to Peroxisome type ascorbate peroxidase && sp|Q0JEQ2|APX3_ORYSJ Probable L-ascorbate peroxidase 3, peroxisomal OS=Oryza sativa subsp. japonica OX=39947 GN=APX3 PE=2 SV=1 && PF00141:Peroxidase"]
[4,8250844,8251143,300,77,0.293009430359034,0.144012587959052,0.148996842399982,446.676694314832,"CHH","4:8249884:8251885","CGI_shore"]
[4,8276593,8276778,186,57,0.310772158528977,0.145591413194757,0.165180745334219,299.63309931631,"CHH","Os04g0224200","promoter","Os04g0224200","Hypothetical protein && - && -"]
[4,8353204,8353281,78,15,0.293003704870224,0.206460932457374,0.0865427724128495,59.6916337879043,"CG","4:8349440:8360561","CGI"]
[4,8386117,8386235,119,42,0.0924446389251351,0.025012283721863,0.0674323552032721,229.261207524863,"CHH","4:8385774:8387774","CGI_shore"]
[4,8578462,8578612,151,27,0.35857292776001,0.194739379358059,0.163833548401951,140.302975463128,"CHH","4:8577292:8579293","CGI_shore"]
[4,8860666,8860806,141,51,0.110274511132474,0.0256194552636586,0.0846550558688151,259.671278750919,"CHH","4:8859105:8861106","CGI_shore"]
[4,9324933,9324984,52,4,0.703707072255961,0.342972007032442,0.360735065223518,21.1302700758516,"CHG","4:9324483:9325107","CGI"]
[4,9690137,9690287,151,41,0.156518095356086,0.0641461510647265,0.0923719442913597,197.746713469535,"CHH","4:9689921:9691922","CGI_shore"]
[4,10018276,10018472,197,35,0.822933186196414,0.550380624439577,0.272552561756837,164.692857878894,"CG","4:10018206:10019324","CGI"]
[4,10139661,10139730,70,6,0.621072697180544,0.24351397204719,0.377558725133354,27.6222311412119,"CHG","4:10138633:10140634","CGI_shore"]
[4,10623694,10623975,282,86,0.26878407036398,0.140560910788779,0.128223159575202,406.923099716944,"CHH","Os04g0261400","promoter","Os04g0261400","Cytochrome c region domain containing protein && - && -"]
[4,11055790,11055900,111,23,0.203594897852647,0.0332699267345456,0.170324971118101,108.534139274048,"CHH","Os04g0267250","promoter","Os04g0267250","Hypothetical gene && - && -"]
[4,11055790,11055900,111,23,0.203594897852647,0.0332699267345456,0.170324971118101,108.534139274048,"CHH","4:11055705:11057706","CGI_shore"]
[4,11334873,11334964,92,19,0.242627383433419,0.0683461017944315,0.174281281638988,86.1028287639184,"CHH","4:11334061:11336061","CGI_shore"]
[4,11785101,11785231,131,26,0.277112261621633,0.0159893740412762,0.261122887580357,136.469079356969,"CHH","4:11784954:11789584","CGI"]
[4,11800292,11800571,280,82,0.173159132219012,0.0817909959627148,0.0913681362562968,401.999755258233,"CHH","4:11799436:11801437","CGI_shore"]
[4,12184901,12184967,67,18,0.150550696595784,0.0419918511111208,0.108558845484663,107.924041516163,"CHH","4:12184600:12186601","CGI_shore"]
[4,12231417,12231646,230,52,0.245097674971424,0.0221357885491634,0.222961886422261,295.633648274541,"CHH","4:12229875:12231876","CGI_shore"]
[4,12353697,12353777,81,18,0.125347830155158,0.0084811227961994,0.116866707358959,109.532223788605,"CHH","4:12352453:12354454","CGI_shore"]
[4,12536138,12536320,183,53,0.187915050252412,0.0507332361477363,0.137181814104675,347.218787010834,"CHH","Os04g0288500","intron","Os04g0288500","Protein kinase, catalytic domain domain containing protein && sp|Q9LXA5|LRK91_ARATH L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 && PF00069:Protein kinase domain|PF00139:Legume lectin domain"]
[4,12858248,12858406,159,32,0.0938584495480707,0.0127417099401341,0.0811167396079365,157.03266498922,"CHH","4:12857125:12859125","CGI_shore"]
[4,13020815,13020968,154,43,0.102127247017154,0.0414284310059197,0.0606988160112346,173.514913285636,"CHH","4:13019316:13021317","CGI_shore"]
[4,13565381,13565525,145,48,0.125464791691949,0.0399800327792212,0.0854847589127279,248.78489788977,"CHH","Os04g0303250","promoter","Os04g0303250","Hypothetical gene && sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana OX=3702 GN=SD25 PE=1 SV=1 && PF00069:Protein kinase domain|PF01453:D-mannose binding lectin"]
[4,13712235,13712351,117,7,0.439363116712153,0.148135761289907,0.291227355422247,32.0685451625662,"CHG","4:13710749:13712749","CGI_shore"]
[4,13884902,13885129,228,66,0.19253381895677,0.061283547151443,0.131250271805327,449.093415883044,"CHH","4:13883390:13885390","CGI_shore"]
[4,13891216,13891329,114,50,0.0713296158942945,0.0251748451168377,0.0461547707774568,231.553047844074,"CHH","Os04g0307800","utr3","Os04g0307800","Myb-related protein P, C-terminal domain containing protein && - && -"]
[4,13954396,13954593,198,68,0.0766247613849463,0.0285743618371551,0.0480503995477912,327.463756074043,"CHH","4:13952580:13954581","CGI_shore"]
[4,14011991,14012103,113,20,0.162699621833116,0.00442465459836922,0.158274967234747,118.48713506007,"CHH","Os04g0309600","intron","SUCROSE SYNTHASE 5","Similar to Sucrose synthase && sp|H6TFZ4|SUS5_ORYSJ Sucrose synthase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SUS5 PE=2 SV=1 && PF00534:Glycosyl transferases group 1|PF00862:Sucrose synthase"]
[4,14352574,14352749,176,45,0.319327827370848,0.177223151317752,0.142104676053096,224.821997280296,"CHH","4:14351265:14353265","CGI_shore"]
[4,14453444,14453716,273,66,0.0789473485555992,0.0130134232627631,0.0659339252928361,371.645187095822,"CHH","4:14398405:14466357","CGI"]
[4,14933274,14933335,62,19,0.8944751327423,0.77133278106685,0.12314235167545,74.4705993365401,"CG","4:14933093:14933474","CGI"]
[4,15154558,15154851,294,85,0.171331983803174,0.0757956971067931,0.0955362866963809,375.169707929238,"CHH","4:15154158:15156159","CGI_shore"]
[4,15415472,15415652,181,36,0.140016619295461,0.0553024235642658,0.0847141957311955,164.263329839202,"CHH","4:15413794:15415795","CGI_shore"]
[4,15493203,15493279,77,27,0.163592385624398,0.0862922902393379,0.0773000953850606,119.730989400979,"CHH","4:15492813:15494814","CGI_shore"]
[4,15853988,15854221,234,55,0.251692790892574,0.104112058282456,0.147580732610119,332.32260153772,"CHH","Os04g0337000","promoter","OsSTA120","Peptidase aspartic, catalytic domain containing protein && sp|Q4V3D2|ASP36_ARATH Aspartic proteinase 36 OS=Arabidopsis thaliana OX=3702 GN=A36 PE=1 SV=1 && -"]
[4,15858996,15859210,215,84,0.242240671000243,0.0819647227152989,0.160275948284944,640.595386708055,"CHH","4:15858284:15859044","CGI"]
[4,15935310,15935389,80,17,0.0818904162703735,0.019074681513619,0.0628157347567545,96.1585698941229,"CHH","4:15933823:15935824","CGI_shore"]
[4,15990264,15990354,91,33,0.152837320988138,0.0732828657367613,0.0795544552513771,153.859920550789,"CHH","4:15989496:15991496","CGI_shore"]
[4,16116494,16116675,182,59,0.0747291343850718,0.0109452336212744,0.0637839007637974,253.408815351291,"CHH","4:16115480:16117480","CGI_shore"]
[4,16202210,16202346,137,24,0.701120161172425,0.489870792445537,0.211249368726889,126.999122899654,"CHG","4:16199145:16202657","CGI"]
[4,16358405,16358466,62,18,0.305408629323599,0.193727705387086,0.111680923936513,87.2195729003927,"CHH","4:16356836:16358837","CGI_shore"]
[4,16422161,16422285,125,37,0.10703983046146,0.0416761793200337,0.0653636511414266,184.778888159152,"CHH","Os04g0345400","exon","terpene synthase 24","Similar to OSIGBa0106G08.7 protein && sp|Q29VN3|TPS8_MAIZE Alpha-copaene synthase OS=Zea mays OX=4577 GN=TPS8 PE=1 SV=1 && PF01397:Terpene synthase, N-terminal domain"]
[4,16443625,16443827,203,61,0.169367187540214,0.0566900099023284,0.112677177637886,401.203605130522,"CHH","Os04g0345800","intron","Os04g0345800","Similar to OSIGBa0127B24.5 protein && sp|Q7XNS7|MTND3_ORYSJ 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ARD3 PE=3 SV=3 && PF03079:ARD/ARD' family"]
[4,16534246,16534406,161,58,0.318357513694466,0.201772847237411,0.116584666457055,269.95630130411,"CHH","4:16533618:16535618","CGI_shore"]
[4,16661508,16661757,250,64,0.387056991741971,0.0971209174105545,0.289936074331417,531.025901365452,"CHH","4:16659802:16661802","CGI_shore"]
[4,16989804,16989918,115,33,0.104957947034035,0.024152930409164,0.080805016624871,180.819355612282,"CHH","Os04g0355500","intron","Os04g0355500","Similar to OSIGBa0147J02.3 protein && sp|Q9XGY7|FAR_SIMCH Alcohol-forming fatty acyl-CoA reductase OS=Simmondsia chinensis OX=3999 PE=1 SV=1 && -"]
[4,17017857,17018009,153,33,0.162268133648689,0.04296910208983,0.119299031558859,200.086076698339,"CHH","4:17017019:17019020","CGI_shore"]
[4,17182218,17182349,132,33,0.188616399650246,0.0552567530167191,0.133359646633527,167.524687050827,"CHH","Os04g0359100","intron","Os04g0359100","Alcohol dehydrogenase superfamily, zinc-containing protein && sp|Q9AYU1|QR1_TRIVS Quinone-oxidoreductase QR1, chloroplastic OS=Triphysaria versicolor OX=64093 PE=1 SV=1 && PF13602:Zinc-binding dehydrogenase|PF08240:Alcohol dehydrogenase GroES-like domain"]
[4,17498454,17498836,383,101,0.496658836456881,0.352265049520522,0.144393786936358,533.767516835247,"CHH","4:17497369:17499370","CGI_shore"]
[4,17537787,17537902,116,55,0.129457078363444,0.0628598563194551,0.0665972220439893,268.884653431112,"CHH","4:17524486:17546571","CGI"]
[4,17560270,17560419,150,46,0.565969231192193,0.388774494107817,0.177194737084376,248.762677127633,"CHH","Os04g0364800","promoter","Os04g0364800","Barwin-related endoglucanase domain containing protein && sp|Q7XVA8|RIP1_ORYSJ Putative ripening-related protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0364800 PE=3 SV=2 && -"]
[4,17882562,17882646,85,32,0.200459087223194,0.0848498619464207,0.115609225276773,190.920409602657,"CHH","4:17881099:17882630","CGI"]
[4,18303382,18303474,93,18,0.189328982911124,0.0236577620355177,0.165671220875606,87.016373387795,"CHH","4:18302918:18304919","CGI_shore"]
[4,18388112,18388255,144,24,0.315176274598202,0.0726100237214542,0.242566250876748,149.202133134753,"CHH","4:18387897:18389898","CGI_shore"]
[4,18452538,18452641,104,31,0.235111185154865,0.0861306620275091,0.148980523127356,167.049904913691,"CHH","Os04g0377600","promoter","Os04g0377600","Similar to OSIGBa0135C09.4 protein && sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus OX=10090 GN=Tbc1d13 PE=1 SV=1 && -"]
[4,18498059,18498145,87,21,0.112336888910609,0.0244510771720709,0.0878858117385377,123.642533884479,"CHH","ENSRNA049448453","promoter","tRNA-Ala","tRNA-Ala for anticodon AGC && - && -"]
[4,18565169,18565351,183,39,0.264491992809998,0.129689753693992,0.134802239116006,212.466393851718,"CHH","4:18564328:18566329","CGI_shore"]
[4,18608107,18608209,103,26,0.119383191851982,0.0304069983132007,0.0889761935387817,127.728866934314,"CHH","Os04g0380300","intron","F-box protein 203","Kelch-type beta propeller domain containing protein && sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g67480 PE=2 SV=1 && PF01344:Kelch motif"]
[4,18740274,18740423,150,33,0.358935476059149,0.182022590658579,0.176912885400569,144.686917005615,"CHH","4:18738530:18740530","CGI_shore"]
[4,18921797,18921915,119,50,0.0884764072813439,0.0343902333120333,0.0540861739693107,234.928289589664,"CHH","4:18920401:18922401","CGI_shore"]
[4,18953165,18953313,149,38,0.405192140194276,0.243813788227286,0.16137835196699,204.009584093795,"CHH","4:18951816:18953817","CGI_shore"]
[4,19410216,19410584,369,53,0.155738011133566,0.0265958989325516,0.129142112201014,319.375080673414,"CHH","4:19409626:19411626","CGI_shore"]
[4,19410923,19411083,161,45,0.162339248213146,0.0365771569318741,0.125762091281272,207.294357335303,"CHH","Os04g0394700","promoter","Os04g0394700","BAR domain containing protein && sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana OX=3702 GN=At2g33490 PE=4 SV=2 && PF03114:BAR domain"]
[4,19688395,19688653,259,69,0.320738386520771,0.152055861242991,0.16868252527778,356.885878063256,"CHH","Os04g0398600","promoter","Os04g0398600","Similar to Pectin-glucuronyltransferase && sp|Q7XLG3|GT42_ORYSJ Probable glucuronosyltransferase Os04g0398600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0398600 PE=2 SV=2 && PF03016:Exostosin family"]
[4,19824188,19824369,182,33,0.125861721528901,0.0131636879608042,0.112698033568097,190.279475123867,"CHH","Os04g0400700","promoter","Os04g0400700","Similar to OSIGBa0113L04.5 protein && sp|A2XT03|PI21_ORYSI Protein PYRICULARIA ORYZAE RESISTANCE 21 OS=Oryza sativa subsp. indica OX=39946 GN=PI21 PE=4 SV=1 && -"]
[4,19866328,19866446,119,26,0.11936710788085,0.0333329563143051,0.0860341515665445,113.663273716207,"CHH","4:19865131:19867131","CGI_shore"]
[4,20037620,20037722,103,24,0.321549589077557,0.143697783044129,0.177851806033428,124.020686110319,"CHH","4:20037338:20039339","CGI_shore"]
[4,20232748,20232909,162,60,0.132502408789825,0.080742750747363,0.0517596580424617,294.239783077335,"CHH","4:20230823:20232823","CGI_shore"]
[4,20232748,20232909,162,60,0.132502408789825,0.080742750747363,0.0517596580424617,294.239783077335,"CHH","Os04g0408900","promoter","Os04g0408900","Similar to DNA-binding protein S1FA && sp|P42553|S1FA1_ORYSJ DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3 SV=1 && -"]
[4,20357103,20357269,167,62,0.371744913887604,0.210903534925106,0.160841378962497,321.224264233898,"CHH","4:20355684:20357685","CGI_shore"]
[4,20357103,20357269,167,62,0.371744913887604,0.210903534925106,0.160841378962497,321.224264233898,"CHH","Os04g0412100","promoter","Os04g0412100","Similar to H0717B12.8 protein && sp|Q9LXJ1|BIC1_ARATH Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1 && -"]
[4,20860714,20860807,94,15,0.162994903811597,0.0632957710472725,0.0996991327643246,94.1036814060151,"CHH","4:20859737:20861737","CGI_shore"]
[4,21228590,21228846,257,78,0.225465881527692,0.00627359864630753,0.219192282881385,647.254530825404,"CHH","4:21228120:21230120","CGI_shore"]
[4,21270408,21270611,204,48,0.170710494680469,0.00906633311051694,0.161644161569952,313.472556070811,"CHH","Os04g0429300","promoter","basic helix-loop-helix protein 145","Similar to OSIGBa0093L02.4 protein && - && PF00010:Helix-loop-helix DNA-binding domain"]
[4,21465092,21465290,199,39,0.137843048684574,0.0332615844566857,0.104581464227888,200.63252449038,"CHH","4:21465034:21467035","CGI_shore"]
[4,21668706,21668886,181,44,0.426062491638378,0.267131714209282,0.158930777429096,249.397435081488,"CHH","4:21666754:21668755","CGI_shore"]
[4,21968302,21968440,139,25,0.271649221564293,0.111497952498916,0.160151269065378,130.396962763092,"CHH","4:21968026:21970026","CGI_shore"]
[4,21970142,21970257,116,20,0.625873032097549,0.247530943502047,0.378342088595502,94.8087470025711,"CG","4:21970027:21970415","CGI"]
[4,22334588,22334784,197,44,0.306496435203745,0.0999733138718598,0.206523121331885,321.133267389456,"CHH","Os04g0447900","promoter","OVATE family protein 24, ovate family protein 15, OVATE-domain containing protein 15","Domain of unknown function DUF623 domain containing protein && sp|Q3E9B4|OFP8_ARATH Transcription repressor OFP8 OS=Arabidopsis thaliana OX=3702 GN=OFP8 PE=1 SV=1 && PF04844:Transcriptional repressor, ovate"]
[4,22424993,22425069,77,21,0.178189782610025,0.0822908240605335,0.0958989585494914,95.304343245148,"CHH","4:22423430:22425430","CGI_shore"]
[4,22844151,22844244,94,30,0.120345704659217,0.0195631189282042,0.100782585731012,199.582159470117,"CHH","4:22842688:22844689","CGI_shore"]
[4,22886354,22886706,353,106,0.197402473484463,0.0795227371369007,0.117879736347562,529.48124683551,"CHH","4:22885779:22887779","CGI_shore"]
[4,23053380,23053526,147,36,0.130238169137329,0.0132360400252741,0.117002129112055,212.020997438079,"CHH","Os04g0461400","intron","Os04g0461400","Conserved hypothetical protein && sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS27 PE=2 SV=2 && -"]
[4,23343862,23343965,104,26,0.0714462980783591,0.0218321538732605,0.0496141442050986,106.54189740771,"CHH","4:23342566:23344567","CGI_shore"]
[4,23378905,23379108,204,48,0.540312846050242,0.338829914344057,0.201482931706186,229.336115042611,"CHH","Os04g0467901","promoter","Os04g0467901","Plant-specific kinesin-14, Processive minus-end-directed microtubule moto && sp|Q8W1Y3|KN14F_ARATH Kinesin-like protein KIN-14F OS=Arabidopsis thaliana OX=3702 GN=KIN14F PE=1 SV=2 && -"]
[4,23989727,23989803,77,28,0.202792658980955,0.0943401076573392,0.108452551323616,111.357846207082,"CHH","4:23988014:23990014","CGI_shore"]
[4,24112316,24112372,57,18,0.079160272603022,0.0215794408351651,0.0575808317678569,76.5638442893439,"CHH","Os04g0482100","promoter","Methionine sulfoxide reductase A2.2","Similar to H0510A06.16 protein && sp|Q7XUP6|MSR22_ORYSJ Peptide methionine sulfoxide reductase A2-2 OS=Oryza sativa subsp. japonica OX=39947 GN=MSRA2-2 PE=2 SV=2 && PF01625:Peptide methionine sulfoxide reductase"]
[4,24113570,24113738,169,35,0.412478550216277,0.162104450097889,0.250374100118388,242.120741635472,"CHH","4:24086570:24117921","CGI"]
[4,24192237,24192289,53,21,0.481145270669434,0.267339104560398,0.213806166109036,128.259729409611,"CHH","4:24190307:24192308","CGI_shore"]
[4,24451984,24452279,296,31,0.236302091658675,0.00804304343797941,0.228259048220695,179.19512709435,"CHH","4:24451117:24453118","CGI_shore"]
[4,24691225,24691321,97,46,0.152129703398339,0.048808460678004,0.103321242720335,289.052478970471,"CHH","4:24689328:24691328","CGI_shore"]
[4,25161217,25161327,111,13,0.411344727985929,0.0489451736413535,0.362399554344576,74.4112811659412,"CHH","4:25159564:25161565","CGI_shore"]
[4,25176852,25176915,64,13,0.224462943612775,0.049054107334517,0.175408836278258,73.4423343616424,"CHH","Os04g0504200","promoter","Os04g0504200","Conserved hypothetical protein && - && -"]
[4,25258719,25258814,96,24,0.09868650300573,0.0356522014091513,0.0630343015965788,111.135472412068,"CHH","4:25257921:25259921","CGI_shore"]
[4,25330136,25330189,54,14,0.201031943698356,0.0430841671460415,0.157947776552314,96.5872794574583,"CG","Os04g0507000","intron","Os04g0507000","Similar to DNA mismatch repair protein && sp|Q84LK0|MSH1_ARATH DNA mismatch repair protein MSH1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MSH1 PE=1 SV=1 && PF01624:MutS domain I|PF00488:MutS domain V"]
[4,25732862,25733033,172,38,0.254784473320686,0.0797252962251627,0.175059177095524,191.972087992309,"CHH","Os04g0514800","promoter","Os04g0514800","Similar to Dual specificity kinase 1 && sp|Q6K9N1|CKI1_ORYSJ Casein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKI1 PE=1 SV=1 && PF00069:Protein kinase domain"]
[4,25889262,25889364,103,21,0.124836143925178,0.0114081498140134,0.113427994111165,106.886169575349,"CHH","4:25888802:25890802","CGI_shore"]
[4,26123512,26123664,153,44,0.138877485197002,0.0154444105484011,0.123433074648601,206.165321206437,"CHH","4:26123094:26125095","CGI_shore"]
[4,26342146,26342257,112,25,0.47493260460428,0.299978501998443,0.174954102605837,129.979634883248,"CHH","4:26320379:26345039","CGI"]
[4,26530093,26530283,191,62,0.117207652806061,0.0347549831286074,0.0824526696774531,382.944843066175,"CHH","Os04g0530400","intron","Os04g0530400","t-snare domain containing protein && sp|P59277|SYP81_ARATH Syntaxin-81 OS=Arabidopsis thaliana OX=3702 GN=SYP81 PE=1 SV=2 && PF10496:SNARE-complex protein Syntaxin-18 N-terminus"]
[4,26615303,26615426,124,36,0.190667515712133,0.070543169736647,0.120124345975486,209.922910661531,"CHH","Os04g0532100","promoter","Os04g0532100","Short-chain dehydrogenase/reductase SDR domain containing protein && sp|A4UHT7|SALR_PAPBR Salutaridine reductase OS=Papaver bracteatum OX=215227 GN=SALR PE=1 SV=1 && PF00106:short chain dehydrogenase|PF13561:Enoyl-(Acyl carrier protein) reductase"]
[4,26730090,26730144,55,19,0.100923269463728,0.0354765124447872,0.0654467570189405,100.330815356766,"CHH","4:26728672:26730673","CGI_shore"]
[4,26730809,26731019,211,55,0.170447757013136,0.0617684489978706,0.108679308015265,271.89031696706,"CHH","4:26728962:26730962","CGI_shore"]
[4,26731130,26731278,149,58,0.257619499372425,0.153409393393996,0.104210105978429,269.744340193507,"CHH","4:26730963:26731789","CGI"]
[4,26928894,26929091,198,39,0.401323895762418,0.222374058987263,0.178949836775155,206.725970011262,"CHH","4:26774360:26951821","CGI"]
[4,27060518,27060813,296,83,0.30678540822137,0.180655675228593,0.126129732992777,431.681202585811,"CHH","Os04g0540900","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 154","Receptor-like cytoplasmic kinase, Salt tolerance, Oxidative stress toleranc && sp|A2XW02|STRK1_ORYSI Salt tolerance receptor-like cytoplasmic kinase 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16820 PE=2 SV=1 && PF00069:Protein kinase domain"]
[4,27067498,27067704,207,73,0.270268396106735,0.0716484028615498,0.198619993245185,447.796570521047,"CHH","4:27065665:27067666","CGI_shore"]
[4,27420178,27420236,59,31,0.0648122907768645,0.00438040375756509,0.0604318870192994,134.256621584501,"CHH","Os04g0547800","intron","Os04g0547800","Conserved hypothetical protein && sp|Q9SJB4|GDL34_ARATH GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana OX=3702 GN=At2g04570 PE=2 SV=1 && -"]
[4,27910885,27910940,56,23,0.100928378843126,0.0481068713836435,0.0528215074594825,116.992078884053,"CHH","4:27908921:27910921","CGI_shore"]
[4,27935908,27936044,137,19,0.71263224490554,0.404344159923592,0.308288084981948,86.6974393239053,"CHG","4:27918438:28005194","CGI"]
[4,27938177,27938272,96,20,0.314124453835561,0.0776408188739782,0.236483634961583,94.2046976932169,"CHH","4:27918438:28005194","CGI"]
[4,28154387,28154455,69,22,0.122672805039479,0.0406461741467543,0.082026630892725,111.113467336561,"CHH","4:28153342:28155342","CGI_shore"]
[4,28335465,28335543,79,25,0.170274282535663,0.0509842534677279,0.119290029067935,123.643044254855,"CHH","Os04g0565400","promoter","CIS-ZEATIN O-GLUCOSYLTRANSFERASE 3","cis-Zeatin-O-glucosyltransferase, Catalyze O-glucosylation of cZ and cZ-ribosid && sp|Q6JAH0|CZOG_SORBI Putative cis-zeatin O-glucosyltransferase OS=Sorghum bicolor OX=4558 GN=SB20O07.14 PE=3 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[4,28394703,28394893,191,42,0.379844476815013,0.2085052536126,0.171339223202413,193.984385171938,"CHH","4:28393863:28395864","CGI_shore"]
[4,28759453,28759553,101,28,0.383255921898651,0.176046276550418,0.207209645348233,151.062048632993,"CHH","4:28758009:28760010","CGI_shore"]
[4,28759453,28759553,101,28,0.383255921898651,0.176046276550418,0.207209645348233,151.062048632993,"CHH","4:28759132:28761132","CGI_shore"]
[4,28832676,28832823,148,17,0.242782587301282,0.0677556905966535,0.175026896704629,87.117780110468,"CHH","4:28831973:28833885","CGI"]
[4,29293753,29293947,195,36,0.366806741453383,0.125100793096212,0.241705948357171,265.911379296177,"CHH","Os04g0580400","promoter","UBIQUITIN-CONJUGATING ENZYME 3","Similar to Ubiquitin-conjugating enzyme E2 I (EC 6.3.2.19) (Ubiquitin-protein ligase I) (Ubiquitin carrier protein I) (SUMO-1-protein ligase) (SUMO- 1 conjugating enzyme) (Ubiquitin carrier protein 9) (p18) && sp|Q42551|SCE1_ARATH SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana OX=3702 GN=SCE1 PE=1 SV=1 && PF00179:Ubiquitin-conjugating enzyme"]
[4,29480363,29480462,100,27,0.405043615684231,0.264748200612066,0.140295415072165,126.865722567975,"CHH","4:29479936:29481937","CGI_shore"]
[4,29796007,29796064,58,10,0.847940083863029,0.636282153997382,0.211657929865647,40.491875667329,"CG","4:29790776:29798546","CGI"]
[4,30188708,30188964,257,77,0.168624278390153,0.0207602726428379,0.147864005747315,525.643503173642,"CHH","4:30187208:30189208","CGI_shore"]
[4,30218958,30219049,92,19,0.681570760904693,0.446523062661178,0.235047698243515,98.5684903594896,"CHH","Os04g0598900","promoter","WALL-ASSOCIATED KINASE GENE 50","Similar to Wall-associated kinase-like protein && sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF00069:Protein kinase domain"]
[4,30449809,30449907,99,35,0.278434156565083,0.138296743945498,0.140137412619585,179.572379911667,"CHH","4:30449098:30451098","CGI_shore"]
[4,30592347,30592412,66,26,0.236003361222387,0.11584374308373,0.120159618138657,130.357895217458,"CHH","4:30590624:30592624","CGI_shore"]
[4,30595028,30595097,70,29,0.0950532749108435,0.0374168630339337,0.0576364118769099,134.19507352786,"CHH","4:30594777:30595473","CGI"]
[4,31032922,31033076,155,44,0.431573057211511,0.277773310690376,0.153799746521135,212.553126368003,"CHH","4:31032892:31034892","CGI_shore"]
[4,31440472,31440796,325,69,0.324093574909079,0.033302570452476,0.290791004456603,553.418726949934,"CHH","Os04g0619000","intron","NAC DOMAIN-CONTAINING PROTEIN 83","Similar to L1332.9 protein && sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana OX=3702 GN=NAC021 PE=1 SV=2 && PF02365:No apical meristem (NAM) protein"]
[4,31539837,31539911,75,19,0.471309580385598,0.281702635755842,0.189606944629756,117.868954377148,"CHH","Os04g0620500","promoter","Os04g0620500","Similar to H0714H04.7 protein && - && -"]
[4,31748670,31748829,160,21,0.304515703331443,0.0802024588905497,0.224313244440893,110.921527037005,"CHH","4:31748095:31750096","CGI_shore"]
[4,31922785,31922851,67,4,0.539476646188301,0.129544702104147,0.409931944084154,19.7826440560681,"CG","Os04g0627132","intron","Os04g0627132","Hypothetical protein && - && -"]
[4,32023162,32023398,237,94,0.422286450447785,0.229202966408499,0.193083484039287,562.187151383748,"CHH","Os04g0629600","promoter","Os04g0629600","Conserved hypothetical protein && - && PF14223:gag-polypeptide of LTR copia-type"]
[4,32188402,32188506,105,17,0.3331481009733,0.0480131831380627,0.285134917835237,105.31614301667,"CHH","Os04g0632400","promoter","Os04g0632400","Hypothetical protein && sp|Q39086|SD17_ARATH Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana OX=3702 GN=SD17 PE=1 SV=1 && -"]
[4,32475271,32475515,245,76,0.27861565810106,0.134211740233036,0.144403917868024,427.447636951674,"CHH","Os04g0639000","promoter","Os04g0639000","Conserved hypothetical protein && - && -"]
[4,32872089,32872287,199,70,0.202884149570149,0.106849106944805,0.0960350426253445,348.430512220185,"CHH","4:32870580:32872581","CGI_shore"]
[4,33264060,33264500,441,115,0.417628426304939,0.266193628698224,0.151434797606715,576.667199784847,"CHH","4:33229439:33279076","CGI"]
[4,33304059,33304196,138,39,0.251405898565158,0.128464547704215,0.122941350860943,238.272004218852,"CHH","4:33303406:33305406","CGI_shore"]
[4,33527417,33527555,139,24,0.195535384671922,0.0820511006398107,0.113484284032111,131.895203960097,"CHH","4:33526054:33528054","CGI_shore"]
[4,34064601,34064667,67,15,0.142142705116687,0.0529101178282139,0.0892325872884729,73.7672285204331,"CHH","4:34062934:34064934","CGI_shore"]
[4,34082655,34082725,71,22,0.145710435954137,0.0507763725489117,0.094934063405225,111.671221160979,"CHH","Os04g0667700","promoter","F-box protein 236","Similar to Actin-related protein 8A && sp|A8WAT2|ARP8_ORYSI Actin-related protein 8 OS=Oryza sativa subsp. indica OX=39946 GN=ARP8 PE=3 SV=1 && -"]
[4,34343701,34343863,163,60,0.220402999604202,0.123046627162784,0.097356372441418,302.190029547727,"CHH","Os04g0672900","intron","Os04g0672900","Similar to H0322F07.6 protein && sp|Q9ZQ34|Y2433_ARATH Uncharacterized protein At2g24330 OS=Arabidopsis thaliana OX=3702 GN=At2g24330 PE=2 SV=1 && PF10058:Predicted integral membrane zinc-ribbon metal-binding protein"]
[4,34546467,34546530,64,11,0.583690104733584,0.233820898638374,0.349869206095209,60.3608297442808,"CHG","4:34545592:34547593","CGI_shore"]
[4,34699994,34700099,106,20,0.182663046070796,0.0218652020230038,0.160797844047792,105.007541174867,"CHH","4:34699878:34701879","CGI_shore"]
[4,35175996,35176153,158,44,0.0698236394704646,0.00722035416027475,0.0626032853101899,212.967582716958,"CHH","4:35147217:35270441","CGI"]
[4,35396381,35396461,81,33,0.226248877352526,0.087016788227015,0.139232089125511,156.000738601066,"CHH","4:35395267:35397268","CGI_shore"]
[4,35434258,35434361,104,19,0.228492917850583,0.0745561275951314,0.153936790255451,126.17318862173,"CHH","4:35432834:35434835","CGI_shore"]
[4,35495126,35495249,124,43,0.225284735216487,0.10340783326138,0.121876901955107,230.404825763828,"CHH","4:35493320:35495320","CGI_shore"]
[4,35495415,35495559,145,54,0.26473936934603,0.110635523000211,0.15410384634582,329.524797671937,"CHH","4:35494474:35496475","CGI_shore"]
[5,32992,33216,225,80,0.310513796935215,0.15017315951758,0.160340637417636,438.183822244325,"CHH","5:10689:33463","CGI"]
[5,121155,121297,143,24,0.198760604510236,5.58267613686389E-3,0.193177928373372,120.095744212299,"CHH","5:120377:122377","CGI_shore"]
[5,471045,471153,109,30,0.43823063435181,0.258250830491779,0.179979803860031,150.272419753074,"CHH","5:469669:471670","CGI_shore"]
[5,548588,548648,61,15,0.843017189687261,0.638174531422703,0.204842658264557,64.1940541836604,"CG","Os05g0110200","exon","Os05g0110200","DVL family protein && sp|B8A9X1|RTFL3_ORYSI Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=RTFL3 PE=3 SV=1 && PF08137:DVL family"]
[5,911344,911499,156,28,0.119274481105285,0.0108115308793711,0.108462950225914,121.888380509623,"CHH","5:909724:911724","CGI_shore"]
[5,1244939,1245002,64,13,0.221806367025797,0.0898252751223971,0.1319810919034,58.3843522457527,"CG","5:1244187:1245003","CGI"]
[5,1525099,1525160,62,17,0.479748003690415,0.303735481937131,0.176012521753283,82.8532106254895,"CG","5:1521971:1530105","CGI"]
[5,1839898,1840083,186,56,0.152924732761528,0.0390211785094947,0.113903554252034,332.623326935772,"CHH","5:1808487:1851858","CGI"]
[5,2047909,2048053,145,58,0.0738099062721231,0.019223065484505,0.0545868407876181,267.953393237318,"CHH","5:2046290:2048291","CGI_shore"]
[5,2059889,2060061,173,65,0.288161958270948,0.103882668938053,0.184279289332895,371.422636495339,"CHH","5:2059943:2062993","CGI"]
[5,2371929,2372001,73,17,0.131207210394414,0.0552091871166435,0.0759980232777701,76.6813024085331,"CHH","Os05g0141200","promoter","Os05g0141200","Hypothetical conserved gene && - && -"]
[5,2520470,2520652,183,31,0.0951466471286408,0.00659788117991584,0.088548765948725,160.690900285029,"CHH","5:2518600:2520600","CGI_shore"]
[5,2520470,2520652,183,31,0.0951466471286408,0.00659788117991584,0.088548765948725,160.690900285029,"CHH","Os05g0143550","TSS","Os05g0143550","Similar to Blast and wounding induced mitogen-activated protein kinase && sp|Q75KK8|MPK14_ORYSJ Mitogen-activated protein kinase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK14 PE=2 SV=1 && -"]
[5,2742325,2742384,60,9,0.576426185523533,0.274055183643311,0.302371001880222,41.9753176921746,"CHG","Os05g0147901","exon","Os05g0147901","Hypothetical protein && - && -"]
[5,2798549,2798643,95,39,0.121813221535873,0.040837461505737,0.0809757600301356,202.013243721062,"CHH","Os05g0148950","promoter","Os05g0148950","Hypothetical protein && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain"]
[5,2821260,2821315,56,20,0.214513221249,0.0629995487214582,0.151513672527541,87.5836677816325,"CG","Os05g0149300","exon","Os05g0149300","Similar to 1-aminocyclopropane-1-carboxylate oxidase && sp|Q9FR99|ACCO_MUSAC 1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata OX=4641 GN=MAO1B PE=3 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily"]
[5,3430337,3430581,245,79,0.12505473551776,0.0601618666716786,0.0648928688460811,365.965795059084,"CHH","5:3428779:3430779","CGI_shore"]
[5,3470264,3470334,71,19,0.13280222897109,0.0563420560467313,0.0764601729243583,89.5853260900328,"CHH","5:3469587:3471588","CGI_shore"]
[5,3470749,3470948,200,43,0.338942552979451,0.191314672854475,0.147627880124976,212.451047547084,"CHH","Os05g0159000","promoter","Os05g0159000","HECT domain containing protein && sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1 && PF00632:HECT-domain (ubiquitin-transferase)"]
[5,3540296,3540443,148,23,0.16282092262859,0.0556781101843531,0.107142812444237,106.317376093747,"CHH","Os05g0160300","intron","non-specific lipid transfer protein d8, lipid transfer protein d8, type D non-specific lipid transfer protein 8, Protease inhibitor","Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein && - && PF14368:Probable lipid transfer"]
[5,3634197,3634430,234,72,0.297919653042217,0.0580724740122281,0.239847179029989,629.419906976101,"CHH","5:3633238:3635238","CGI_shore"]
[5,3975424,3975623,200,56,0.189571714611799,0.0451360939740153,0.144435620637783,278.511658472393,"CHH","5:3975250:3976028","CGI"]
[5,4139868,4139991,124,13,0.465044030965703,0.104446715406265,0.360597315559438,75.0855779153458,"CHH","Os05g0169000","promoter","THIOREDOXIN H-TYPE 8","Similar to Thioredoxin-like protein && sp|Q0DKF1|TRH42_ORYSJ Thioredoxin H4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0169000 PE=2 SV=1 && -"]
[5,4190752,4190934,183,46,0.211129469417045,0.0345705087977516,0.176558960619293,353.944919541813,"CHH","5:4188978:4190978","CGI_shore"]
[5,4226759,4226961,203,46,0.213541441038354,0.0524211324315187,0.161120308606835,335.40602176155,"CHH","Os05g0170600","exon","CLV3/ESR-related 503, CLAVATA3/ENDOSPERM SURROUNDING REGION (ESR)-related (CLE) protein 503","Similar to CLE family OsCLE503 protein && - && -"]
[5,4226759,4226961,203,46,0.213541441038354,0.0524211324315187,0.161120308606835,335.40602176155,"CHH","5:4226547:4228548","CGI_shore"]
[5,4557214,4557276,63,12,0.257462391173111,0.0611030528286399,0.196359338344471,93.6704508828711,"CHH","5:4556373:4558373","CGI_shore"]
[5,4558398,4558591,194,66,0.230097071189143,0.095918063732548,0.134179007456595,379.097413047289,"CHH","5:4558374:4558813","CGI"]
[5,4752452,4752613,162,52,0.0876774258061433,0.0108345976055517,0.0768428282005917,303.037639138066,"CHH","5:4751715:4753715","CGI_shore"]
[5,4775545,4775693,149,51,0.205520491287432,0.0612490509426511,0.144271440344781,290.985703130022,"CHH","5:4774956:4776957","CGI_shore"]
[5,4841181,4841302,122,32,0.220241096901887,0.113439433258858,0.106801663643028,143.680679121393,"CHH","5:4839633:4841634","CGI_shore"]
[5,4866940,4867044,105,28,0.200047615292935,0.0693256899190439,0.130721925373891,145.479308918922,"CHH","5:4865754:4867755","CGI_shore"]
[5,4914632,4914699,68,16,0.384640945056866,0.0942293678621286,0.290411577194737,93.6970348966966,"CHH","5:4914324:4916325","CGI_shore"]
[5,4982855,4983005,151,37,0.140611673757378,0.0542717205106687,0.0863399532467096,179.242767450695,"CHH","5:4981992:4983993","CGI_shore"]
[5,5078357,5078441,85,23,0.0866565307674842,0.0248499016401286,0.0618066291273556,112.012192880025,"CHH","5:5077539:5079539","CGI_shore"]
[5,5201217,5201310,94,30,0.0643730221358016,0.00918253040587916,0.0551904917299225,117.170287997522,"CHH","5:5201112:5201401","CGI"]
[5,5328467,5328538,72,24,0.0850437402930484,0.0258975485397063,0.0591461917533421,109.852038718002,"CHH","Os05g0186900","promoter","IAA16","Similar to Auxin-responsive protein IAA16 && sp|P0C127|IAA16_ORYSJ Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA16 PE=2 SV=1 && -"]
[5,5535154,5535223,70,14,0.184045297651618,0.0588123163108156,0.125232981340802,59.1309604164948,"CHG","5:5534774:5535193","CGI"]
[5,5816157,5816259,103,30,0.281933956874406,0.0155671689515209,0.266366787922885,155.497821720284,"CHH","5:5815310:5817311","CGI_shore"]
[5,6001751,6001996,246,69,0.640242759444468,0.440793012206913,0.199449747237554,379.961876308307,"CHH","Os05g0197300","promoter","Os05g0197300","IQ calmodulin-binding region domain containing protein && sp|Q058N0|IQM5_ARATH IQ domain-containing protein IQM5 OS=Arabidopsis thaliana OX=3702 GN=IQM5 PE=2 SV=1 && -"]
[5,6651981,6652146,166,23,0.220710672386863,0.0148858766902034,0.205824795696659,121.71753823156,"CHH","5:6650300:6652301","CGI_shore"]
[5,6758773,6758894,122,26,0.379266224314748,0.156657808178995,0.222608416135753,126.844967871679,"CHG","Os05g0209301","promoter","Os05g0209301","Hypothetical protein && sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 && PF13639:Ring finger domain"]
[5,6865732,6865890,159,53,0.325056489634502,0.190754274582641,0.134302215051862,268.233132236795,"CHH","5:6864793:6866793","CGI_shore"]
[5,7151862,7151955,94,25,0.257174373561152,0.0819946900408467,0.175179683520306,120.404417644567,"CHH","Os05g0215300","promoter","Os05g0215300","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9AR73|HQGT_RAUSE Hydroquinone glucosyltransferase OS=Rauvolfia serpentina OX=4060 GN=AS PE=1 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[5,7511942,7512014,73,23,0.0919124357622422,0.00787851538276328,0.0840339203794789,102.396411273807,"CHH","5:7510046:7512046","CGI_shore"]
[5,7536417,7536651,235,81,0.21758414709235,0.104399190616517,0.113184956475833,436.503431989019,"CHH","Os05g0223000","promoter","CALMODULIN-LIKE PROTEIN 18","Similar to TCH2 (TOUCH 2); calcium ion binding && sp|Q0DJV6|CML18_ORYSJ Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 GN=CML18 PE=2 SV=1 && PF13499:EF-hand domain pair"]
[5,7896529,7896727,199,58,0.159131739039305,0.0619931062839761,0.0971386327553291,288.056694980202,"CHH","5:7882622:7900764","CGI"]
[5,8157030,8157194,165,29,0.638268697587228,0.304202910189745,0.334065787397483,164.541146902923,"CHH","5:8155389:8157390","CGI_shore"]
[5,8295318,8295471,154,45,0.115355282063282,0.00813940376983224,0.10721587829345,235.05702860024,"CHH","Os05g0235450","promoter","Os05g0235450","Hypothetical conserved gene && sp|F4ITL6|RTE1_ARATH Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana OX=3702 GN=RTE1 PE=1 SV=1 && PF05608:Protein of unknown function (DUF778)"]
[5,8648707,8648815,109,43,0.191000104795208,0.0803517695815897,0.110648335213619,186.035110354674,"CHH","5:8647656:8648737","CGI"]
[5,8704466,8704543,78,26,0.815441817587997,0.522156020759842,0.293285796828155,120.94081828493,"CG","Os05g0243300","promoter","Ribosomal protein L13, mitochondrial ribosomal protein L13, mitochondrial RPL13","Similar to 50S ribosomal protein L13 && sp|Q1AU63|RL13_RUBXD 50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=rplM PE=3 SV=2 && PF00572:Ribosomal protein L13"]
[5,8788617,8788716,100,17,0.201514150142937,0.0384347124622559,0.163079437680681,73.0992743531713,"CHH","Os05g0244700","promoter","aminotransferase, class IV family protein","Aminotransferase, class IV family protein && sp|Q8L493|DAAA_ARATH D-amino-acid transaminase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAAT PE=1 SV=1 && PF01063:Amino-transferase class IV"]
[5,8920935,8921001,67,18,0.0835221628300722,0.0145317242324136,0.0689904385976586,85.291223722759,"CHH","5:8919569:8921569","CGI_shore"]
[5,8975442,8975590,149,48,0.206472499097901,0.0962731188552023,0.110199380242699,230.54988637853,"CHH","5:8974304:8976305","CGI_shore"]
[5,9141051,9141114,64,20,0.099820061928588,0.00753093445380435,0.0922891274747837,92.2906622736755,"CHH","5:9139734:9141734","CGI_shore"]
[5,9174318,9174391,74,31,0.257486773898613,0.1408832207098,0.116603553188813,145.18135047894,"CHH","5:9174146:9176147","CGI_shore"]
[5,9539493,9539589,97,33,0.248871135480965,0.0830726813742123,0.165798454106753,181.066814359135,"CHH","5:9539427:9541428","CGI_shore"]
[5,10130131,10130208,78,23,0.112721630856234,0.0448597893700764,0.0678618414861574,106.646219316153,"CHH","5:10129221:10131221","CGI_shore"]
[5,10522375,10522475,101,26,0.0964012016165563,0.0385342339962742,0.0578669676202821,119.012019750467,"CHH","5:10520766:10522766","CGI_shore"]
[5,10629123,10629317,195,52,0.229773632450582,0.0786908994203695,0.151082733030212,273.26135553135,"CHH","5:10628949:10630949","CGI_shore"]
[5,10723153,10723242,90,18,0.134827102521201,0.00886541199947342,0.125961690521728,97.8605981691013,"CHH","5:10723119:10729740","CGI"]
[5,10802163,10802314,152,26,0.721486231664652,0.514361556133162,0.20712467553149,139.254050239813,"CG","5:10801162:10803162","CGI_shore"]
[5,10813419,10813504,86,6,0.524827127470834,0.234006707292348,0.290820420178486,27.9463946696569,"CHG","5:10812661:10814661","CGI_shore"]
[5,11095785,11095899,115,26,0.123462533455583,0.0121495364976333,0.111312996957949,124.22488843838,"CHH","5:11095518:11097518","CGI_shore"]
[5,11225927,11226231,305,70,0.280587714824046,0.0724726864858206,0.208115028338225,363.479891077755,"CHH","5:11225501:11227501","CGI_shore"]
[5,11246947,11247131,185,50,0.305678661294103,0.0333757865053822,0.272302874788721,475.053144869854,"CHH","Os05g0274900","promoter","Os05g0274900","Similar to 60S ribosomal protein L15-1 && sp|O82528|RL15_PETHY 60S ribosomal protein L15 OS=Petunia hybrida OX=4102 GN=RPL15 PE=2 SV=1 && PF00827:Ribosomal L15"]
[5,12145546,12145756,211,70,0.141389467395631,0.0490939125750624,0.0922955548205689,345.467787192104,"CHH","5:12143833:12145833","CGI_shore"]
[5,12574089,12574186,98,19,0.547728984585957,0.385319127440733,0.162409857145224,88.3058358059664,"CG","5:12572119:12574119","CGI_shore"]
[5,12672902,12673025,124,31,0.187447611939999,0.0719318513953497,0.115515760544649,151.67462094156,"CHH","5:12671607:12673607","CGI_shore"]
[5,12691327,12691529,203,64,0.155869687492331,0.0582055820746475,0.0976641054176834,376.039212683124,"CHH","5:12690940:12692940","CGI_shore"]
[5,12834328,12834424,97,23,0.270977902032615,0.164564348603435,0.10641355342918,101.691622615711,"CHH","5:12833024:12835025","CGI_shore"]
[5,12834328,12834424,97,23,0.270977902032615,0.164564348603435,0.10641355342918,101.691622615711,"CHH","Os05g0291700","intron","Os05g0291700","Similar to PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE18); binding / catalytic && sp|Q9STF2|PTA16_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 16, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC16 PE=1 SV=1 && PF13460:NAD(P)H-binding"]
[5,12998060,12998240,181,41,0.149590087558784,0.0561144633084214,0.093475624250363,208.849666358688,"CHH","5:12996519:12998519","CGI_shore"]
[5,13278486,13278728,243,30,0.470346154165729,0.16350419750055,0.306841956665179,159.824282732222,"CHG","Os05g0297800","utr5","Os05g0297800","Conserved hypothetical protein && - && -"]
[5,13303909,13304037,129,34,0.529423026458278,0.302212920619758,0.22721010583852,174.106888591301,"CHH","5:13296318:13304407","CGI"]
[5,13662114,13662184,71,10,0.87136886054875,0.449222534224838,0.422146326323912,42.1867894162794,"CG","5:13661116:13663117","CGI_shore"]
[5,13681559,13681689,131,48,0.0832265186325118,0.0111733780283065,0.0720531406042052,328.191446149319,"CHH","5:13680548:13682549","CGI_shore"]
[5,13840937,13841349,413,116,0.185452226374263,0.08520916557605,0.100243060798213,606.698902241108,"CHH","Os05g0306000","intron","Os05g0306000","GOLD domain containing protein && - && -"]
[5,14196099,14196351,253,78,0.352924930204734,0.177679518508006,0.175245411696728,430.755971644532,"CHH","Os05g0311037","intron","Os05g0311037","Hypothetical protein && sp|Q0DJ99|COPD2_ORYSJ Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0311000 PE=2 SV=1 && -"]
[5,14265705,14265843,139,27,0.248045887667088,0.00991911893602737,0.238126768731061,142.836476704154,"CHH","5:14264916:14266917","CGI_shore"]
[5,14752058,14752296,239,69,0.123693159068382,0.0402237819822543,0.0834693770861278,376.554204953942,"CHH","5:14750991:14752992","CGI_shore"]
[5,14924033,14924118,86,28,0.144322979758786,0.012660960029085,0.131662019729701,126.735173264793,"CHH","5:14910339:14929199","CGI"]
[5,15045770,15045852,83,14,0.160831580334947,0.00758418713457946,0.153247393200367,70.7494373324341,"CHH","5:15044551:15046551","CGI_shore"]
[5,15576711,15576883,173,38,0.214758570149419,0.0967304775685408,0.118028092580878,191.002161372603,"CHH","Os05g0332600","promoter","Os05g0332600","Xanthine/uracil/vitamin C permease family protein && sp|Q9SRK7|AZG1_ARATH Adenine/guanine permease AZG1 OS=Arabidopsis thaliana OX=3702 GN=AZG1 PE=2 SV=1 && PF00860:Permease family"]
[5,15660167,15660401,235,21,0.461409174064453,0.219892364773076,0.241516809291377,111.167005110536,"CHG","5:15660150:15662150","CGI_shore"]
[5,15692257,15692356,100,19,0.139456936611675,0.040285435655811,0.0991715009558637,101.808660345323,"CHH","5:15691812:15693813","CGI_shore"]
[5,15771507,15771662,156,42,0.0758366013381307,0.0130098476282311,0.0628267537098997,225.192628345533,"CHH","Os05g0337400","intron","Os05g0337400","Similar to heavy-metal-associated domain-containing protein && - && -"]
[5,15823869,15823954,86,33,0.254128897842536,0.103859623159846,0.15026927468269,155.912485039772,"CHH","5:15820982:15828451","CGI"]
[5,16139727,16139851,125,45,0.103235317658146,0.0112719585000135,0.0919633591581327,225.965162597427,"CHH","5:16138241:16140242","CGI_shore"]
[5,16180629,16180806,178,68,0.221247134834367,0.0733502509345002,0.147896883899867,377.086627897973,"CHH","5:16180471:16180880","CGI"]
[5,16291401,16291519,119,32,0.233918556473122,0.123238094093772,0.110680462379349,162.519343943688,"CHH","Os05g0346100","intron","Os05g0346100","Phox-like domain containing protein && sp|B9DFS6|SNX2B_ARATH Sorting nexin 2B OS=Arabidopsis thaliana OX=3702 GN=SNX2B PE=1 SV=1 && PF00787:PX domain|PF09325:Vps5 C terminal like"]
[5,16425168,16425245,78,20,0.157941277448783,0.0506846421260122,0.107256635322771,103.783614994863,"CHH","5:16423337:16425338","CGI_shore"]
[5,16501308,16501645,338,105,0.136387492661334,0.0551236057322771,0.0812638869290566,511.735618353762,"CHH","Os05g0349400","promoter","Os05g0349400","Conserved hypothetical protein && - && -"]
[5,16602891,16603076,186,69,0.100043101837749,0.037807249977001,0.0622358518607483,339.983191636056,"CHH","Os05g0351200","promoter","ETHYLENE RESPONSE FACTOR 117","Similar to AP2 domain transcription factor && sp|C7J2Z1|ABI4_ORYSJ Ethylene-responsive transcription factor ABI4 OS=Oryza sativa subsp. japonica OX=39947 GN=ABI4 PE=3 SV=1 && PF00847:AP2 domain"]
[5,16656888,16656939,52,14,0.172107467836147,0.0722839813014243,0.0998234865347228,76.5706335257598,"CHH","5:16656913:16658914","CGI_shore"]
[5,16845431,16845483,53,19,0.357568539959773,0.212468258577309,0.145100281382464,89.091051115476,"CHH","Os05g0355200","promoter","Os05g0355200","Pentatricopeptide repeat domain containing protein && sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1 && PF13041:PPR repeat family|PF01535:PPR repeat|PF13812:Pentatricopeptide repeat domain"]
[5,16961307,16961383,77,22,0.134902992146192,0.0674460440963636,0.0674569480498288,112.669319043741,"CHH","5:16960100:16962101","CGI_shore"]
[5,16964351,16964455,105,21,0.238023297547846,0.0319812662155885,0.206042031332257,98.1185519701063,"CHH","5:16962855:16964855","CGI_shore"]
[5,17133012,17133199,188,27,0.284012103897376,0.0416686791728719,0.242343424724504,143.278900986032,"CHH","5:17131038:17133039","CGI_shore"]
[5,17416073,17416189,117,30,0.108855602287594,0.0234766635196089,0.0853789387679846,160.444477970485,"CHH","5:17415980:17417981","CGI_shore"]
[5,17613723,17613790,68,25,0.0592987279387166,0.0238495738932615,0.0354491540454551,116.431040088784,"CHH","Os05g0366800","promoter","BETA-GLUCOSIDASE 23","Similar to Beta-glucosidase 22 && sp|Q6L597|BGL23_ORYSJ Putative beta-glucosidase 23 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU23 PE=5 SV=2 && PF00232:Glycosyl hydrolase family 1"]
[5,17623525,17623685,161,27,0.157773872863858,0.0413345236698844,0.116439349193974,146.738579261877,"CHH","Os05g0366900","promoter","Os05g0366900","Conserved hypothetical protein && - && -"]
[5,17841319,17841505,187,47,0.364904054784854,0.199746561622135,0.165157493162719,237.806277661475,"CHH","Os05g0370900","intron","Os05g0370900","Conserved hypothetical protein && sp|A2WYS7|PIR7B_ORYSI Esterase PIR7B OS=Oryza sativa subsp. indica OX=39946 GN=PIR7B PE=3 SV=2 && PF12697:Alpha/beta hydrolase family"]
[5,17841319,17841505,187,47,0.364904054784854,0.199746561622135,0.165157493162719,237.806277661475,"CHH","5:17840549:17842549","CGI_shore"]
[5,18024748,18024825,78,14,0.176879934241771,0.0229874782584805,0.15389245598329,81.672347142019,"CHH","5:18023449:18025450","CGI_shore"]
[5,18409570,18409755,186,44,0.206389330483292,0.0520724874921253,0.154316842991167,270.897385789064,"CHH","5:18407936:18409937","CGI_shore"]
[5,18424164,18424249,86,27,0.142248968163783,0.0492635730578507,0.0929853951059323,134.922677935217,"CHH","5:18422490:18424490","CGI_shore"]
[5,18654177,18654268,92,9,0.88501446109319,0.735934972921673,0.149079488171517,39.5576945372932,"CG","5:18654121:18656121","CGI_shore"]
[5,18736548,18736612,65,19,0.213151352228316,0.0996703831753048,0.113480969053011,94.0153721213576,"CHH","5:18736300:18736566","CGI"]
[5,18736548,18736612,65,19,0.213151352228316,0.0996703831753048,0.113480969053011,94.0153721213576,"CHH","5:18736566:18738567","CGI_shore"]
[5,18795876,18795937,62,21,0.417965866662006,0.269521328736328,0.148444537925678,91.7984206578018,"CHH","5:18794119:18796119","CGI_shore"]
[5,19158758,19158822,65,24,0.0992777663420787,0.04106033780406,0.0582174285380188,108.306261874237,"CHH","Os05g0393700","promoter","ISOAMYLASE 2","Similar to Isoamylase-type starch debranching enzyme ISO2 && sp|Q6AU80|ISOA2_ORYSJ Isoamylase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISA2 PE=1 SV=1 && PF02922:Carbohydrate-binding module 48 (Isoamylase N-terminal domain)"]
[5,19158758,19158822,65,24,0.0992777663420787,0.04106033780406,0.0582174285380188,108.306261874237,"CHH","Os05g0393800","promoter","HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.3","Protein of unknown function DUF221 domain containing protein && sp|Q9SY14|CSCL2_ARATH CSC1-like protein At4g02900 OS=Arabidopsis thaliana OX=3702 GN=At4g02900 PE=3 SV=1 && PF02714:Calcium-dependent channel, 7TM region, putative phosphate|PF14703:Cytosolic domain of 10TM putative phosphate transporter|PF13967:Late exocytosis, associated with Golgi transport"]
[5,19282891,19282970,80,19,0.80687394184951,0.436625011764719,0.37024893008479,91.1136203121382,"CG","Os05g0395850","exon","Os05g0395850","Hypothetical protein && sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis OX=3988 GN=HEX6 PE=2 SV=1 && -"]
[5,19288976,19289068,93,35,0.0851395002245414,0.0329560394841196,0.0521834607404219,155.947888387718,"CHH","5:19287118:19289118","CGI_shore"]
[5,19591345,19591638,294,107,0.232472575234011,0.102645143073954,0.129827432160057,618.318809463664,"CHH","Os05g0402300","promoter","Os05g0402300","Uncharacterised protein family UPF0005 domain containing protein && sp|Q94A20|LFG5_ARATH BI1-like protein OS=Arabidopsis thaliana OX=3702 GN=LFG5 PE=2 SV=1 && PF01027:Inhibitor of apoptosis-promoting Bax1"]
[5,19608894,19608955,62,14,0.102543726491808,0.0167724471050408,0.0857712793867673,104.332262760728,"CHH","Os05g0402700","TES","fructose-diphosphate aldolase, aldolase isozyme C-2, aldolase C-2, cytoplasmic aldolase C-2","Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) && sp|P17784|ALFC1_ORYSJ Fructose-bisphosphate aldolase 1, cytoplasmic OS=Oryza sativa subsp. japonica OX=39947 GN=FBA1 PE=1 SV=2 && PF00274:Fructose-bisphosphate aldolase class-I"]
[5,19677259,19677401,143,37,0.0993841359778318,0.0501972275115712,0.0491869084662606,154.883175747958,"CHH","5:19662947:19679009","CGI"]
[5,19945384,19945535,152,27,0.683306572517338,0.490836182454174,0.192470390063165,125.710162803401,"CHH","5:19943717:19945717","CGI_shore"]
[5,20033495,20033574,80,27,0.187472644904417,0.0769293400311876,0.11054330487323,154.18253369994,"CHH","5:20031891:20033891","CGI_shore"]
[5,20123383,20123438,56,20,0.182923472213413,0.030242058183584,0.152681414029829,90.1716733331765,"CHH","5:20123302:20127579","CGI"]
[5,20170513,20170692,180,59,0.272241812932733,0.152504022513168,0.119737790419565,304.013546039493,"CHH","5:20168774:20170774","CGI_shore"]
[5,20304909,20305028,120,43,0.057368513298607,0.0161076710755922,0.0412608422230148,190.408204107559,"CHH","5:20304652:20306652","CGI_shore"]
[5,20310130,20310276,147,54,0.123987013588583,0.0407238053374181,0.0832632082511644,270.972754645974,"CHH","Os05g0415400","promoter","NAC DOMAIN-CONTAINING PROTEIN 24","Similar to OsNAC6 protein && sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=NAC025 PE=2 SV=1 && PF02365:No apical meristem (NAM) protein"]
[5,20583989,20584077,89,35,0.238132269062306,0.0929362846727652,0.145195984389541,167.508617089258,"CHH","Os05g0419600","promoter","Os05g0419600","Conserved hypothetical protein && - && -"]
[5,20798628,20798763,136,44,0.193618635542088,0.0646894979869842,0.128929137555104,280.591596460406,"CHH","5:20797776:20799776","CGI_shore"]
[5,20843263,20843374,112,35,0.213563189153452,0.005629550068573,0.207933639084879,257.08766026887,"CHH","Os05g0425600","promoter","Os05g0425600","Hypothetical protein && - && -"]
[5,20859859,20859909,51,19,0.0773009683433935,0.0146039578477538,0.0626970104956397,112.137770446522,"CHH","5:20858501:20860501","CGI_shore"]
[5,20959291,20959363,73,20,0.221810544573894,0.0213756413838812,0.200434903190013,140.397467440538,"CHH","5:20936355:20965372","CGI"]
[5,21196450,21196572,123,39,0.121469512798375,0.0486731322310382,0.072796380567337,188.119119575601,"CHH","5:21195689:21197690","CGI_shore"]
[5,21307466,21307554,89,20,0.15803058071246,0.0442092274956455,0.113821353216814,75.6757558044939,"CHH","5:21307147:21309148","CGI_shore"]
[5,21435914,21436146,233,56,0.388665848697744,0.102687458534942,0.285978390162801,441.12780207134,"CHH","5:21435538:21437538","CGI_shore"]
[5,21491023,21491335,313,30,0.240363264887309,0.0218463904503392,0.21851687443697,190.037029058239,"CHH","Os05g0438500","promoter","Os05g0438500","Similar to Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) && sp|O48556|IPYR_MAIZE Soluble inorganic pyrophosphatase OS=Zea mays OX=4577 GN=IPP PE=2 SV=1 && PF00719:Inorganic pyrophosphatase"]
[5,21530289,21530339,51,12,0.815319893949052,0.594291505564471,0.22102838838458,56.5502784089253,"CG","Os05g0439750","promoter","Os05g0439750","Conserved hypothetical protein && - && -"]
[5,21581912,21582095,184,62,0.32312445140818,0.0843933069752956,0.238731144432884,359.697420890681,"CHH","5:21580403:21582404","CGI_shore"]
[5,21677873,21678081,209,51,0.229609415758348,0.0533631292237837,0.176246286534564,280.228684394559,"CHH","5:21676375:21678376","CGI_shore"]
[5,21755552,21755700,149,40,0.393071140314748,0.200243950351272,0.192827189963476,211.400016097791,"CHH","5:21753806:21755806","CGI_shore"]
[5,22121894,22122011,118,37,0.118433387012149,0.0346660379176533,0.0837673490944961,182.488465226362,"CHH","Os05g0450300","promoter","Os05g0450300","Conserved hypothetical protein && - && -"]
[5,22163758,22163954,197,79,0.227084452426363,0.104088452090273,0.12299600033609,402.889239734178,"CHH","Os05g0451300","promoter","Os05g0451300","Conserved hypothetical protein && - && -"]
[5,22182674,22182869,196,45,0.291561714336573,0.15555420979789,0.136007504538683,214.946792043047,"CHH","Os05g0451900","promoter","OsSTA151","Similar to Axi 1 (Auxin-independent growth promoter)-like protein && sp|Q9SH89|OFT19_ARATH O-fucosyltransferase 19 OS=Arabidopsis thaliana OX=3702 GN=OFUT19 PE=2 SV=1 && PF10250:GDP-fucose protein O-fucosyltransferase"]
[5,22272341,22272617,277,60,0.171760760147677,0.0408144766242359,0.130946283523441,356.101087931435,"CHH","5:22270480:22272480","CGI_shore"]
[5,22332923,22333119,197,36,0.35210505490877,0.131091966053879,0.221013088854891,180.711181719548,"CHH","5:22333114:22335114","CGI_shore"]
[5,22504996,22505050,55,14,0.154933044210236,0.0765486809640503,0.0783843632461861,68.9896783554958,"CHH","5:22503714:22505715","CGI_shore"]
[5,23003031,23003224,194,40,0.235428501712569,0.118162774205661,0.117265727506908,206.381818199954,"CHH","Os05g0468550","intron","Os05g0468550","Hypothetical gene && sp|F4IY62|UGPA3_ARATH UTP--glucose-1-phosphate uridylyltransferase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=UGP3 PE=1 SV=1 && -"]
[5,23220931,23221132,202,37,0.322930876297602,0.0433205909854046,0.279610285312198,188.314233042525,"CHH","5:23218957:23220958","CGI_shore"]
[5,23402575,23402686,112,18,0.143162562726023,0.0437951868878584,0.0993673758381649,83.8578304226098,"CHH","5:23402073:23404073","CGI_shore"]
[5,23453338,23453521,184,48,0.331062931078364,0.169425564943675,0.161637366134689,263.709296221631,"CHH","5:23453145:23455146","CGI_shore"]
[5,23539120,23539330,211,29,0.208367134799284,0.0161169604538671,0.192250174345417,161.828066618993,"CHH","Os05g0478700","promoter","WRKY GENE 84","Hypothetical conserved gene && sp|Q9LZV6|WRK62_ARATH Probable WRKY transcription factor 62 OS=Arabidopsis thaliana OX=3702 GN=WRKY62 PE=1 SV=2 && PF03106:WRKY DNA -binding domain"]
[5,23691536,23691683,148,53,0.48237876274068,0.22441050037243,0.257968262368251,278.610775949833,"CHH","Os05g0481700","promoter","OsSTA153","Hypothetical conserved gene && - && -"]
[5,24094637,24094840,204,56,0.0945709669426326,0.0303387029872101,0.0642322639554225,246.636570210231,"CHH","5:24094329:24096330","CGI_shore"]
[5,24312488,24312667,180,54,0.32774494588736,0.149291667975418,0.178453277911942,237.850905409228,"CHH","5:24309951:24313309","CGI"]
[5,25022170,25022332,163,22,0.596936799887205,0.29087304870611,0.306063751181096,110.413631009045,"CG","5:25020716:25022716","CGI_shore"]
[5,25531341,25531548,208,46,0.191655790082853,0.056781668234944,0.134874121847909,264.382260411148,"CHH","5:25531101:25533102","CGI_shore"]
[5,25619502,25619629,128,31,0.334669218219457,0.193297999288273,0.141371218931184,151.792216747143,"CHH","5:25618304:25620305","CGI_shore"]
[5,25619502,25619629,128,31,0.334669218219457,0.193297999288273,0.141371218931184,151.792216747143,"CHH","Os05g0516600","promoter","small GTP-binding protein OsRab7B3, GTP-binding protein OsRab7","Small GTP binding protein && sp|Q40787|RAB7_CENCI Ras-related protein Rab7 OS=Cenchrus ciliaris OX=35872 PE=2 SV=1 && PF00071:Ras family"]
[5,26059417,26059477,61,17,0.107530265743392,0.0218931387843232,0.085637126959069,100.25905811861,"CHH","5:26058895:26060896","CGI_shore"]
[5,26124546,26124636,91,43,0.0894791907928746,0.0111391566341501,0.0783400341587246,203.762345040799,"CHH","Os05g0524666","TSS","Os05g0524666","Similar to Glycine-rich protein 2b && sp|P27484|GRP2_NICSY Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1 && PF00313:'Cold-shock' DNA-binding domain"]
[5,26183205,26183265,61,13,0.293789786995764,0.147684122936478,0.146105664059286,69.6085692381635,"CHH","5:26170064:26202817","CGI"]
[5,26216866,26217047,182,52,0.362998306440394,0.177688151755711,0.185310154684682,293.797784176462,"CHH","5:26215898:26217899","CGI_shore"]
[5,26216866,26217047,182,52,0.362998306440394,0.177688151755711,0.185310154684682,293.797784176462,"CHH","5:26216762:26218762","CGI_shore"]
[5,26317171,26317299,129,29,0.441254522400265,0.185245922396416,0.256008600003848,140.897107165182,"CG","5:26316986:26318929","CGI"]
[5,26823642,26823713,72,15,0.214934833656349,0.121273064776447,0.0936617688799015,70.8179907209883,"CHH","5:26822534:26824534","CGI_shore"]
[5,26823642,26823713,72,15,0.214934833656349,0.121273064776447,0.0936617688799015,70.8179907209883,"CHH","Os05g0540000","promoter","Os05g0540000","EXTL2, alpha-1,4-N-acetylhexosaminyltransferase domain containing protein && sp|Q53WK1|GINT1_ORYSJ Glucosamine inositolphosphorylceramide transferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GINT1 PE=2 SV=1 && PF09258:Glycosyl transferase family 64 domain"]
[5,26957823,26958160,338,118,0.311356879793261,0.155739894507051,0.155616985286209,568.197449713853,"CHH","Os05g0543100","promoter","Os05g0543100","Similar to Clathrin coat assembly protein AP47 (Clathrin coat associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101) && sp|O22715|AP1M2_ARATH AP-1 complex subunit mu-2 OS=Arabidopsis thaliana OX=3702 GN=AP1M2 PE=1 SV=1 && PF00928:Adaptor complexes medium subunit family"]
[5,27102608,27102761,154,29,0.370113605123634,0.236150971319949,0.133962633803685,131.364073989401,"CHH","5:27101417:27111907","CGI"]
[5,27311794,27312071,278,94,0.160584606723168,0.0458472725731974,0.114737334149971,454.199535881246,"CHH","Os05g0549850","exon","Os05g0549850","Conserved hypothetical protein && - && -"]
[5,27399921,27399984,64,14,0.20152986265145,0.0903569496242188,0.111172913027231,102.654283070786,"CHH","5:27399780:27401780","CGI_shore"]
[5,27449040,27449240,201,27,0.355628213918818,0.144007754033779,0.211620459885039,147.000904759474,"CHH","Os05g0552000","promoter","Os05g0552000","Conserved hypothetical protein && - && -"]
[5,27799715,27799894,180,34,0.213011658879589,0.0859467598143355,0.127064899065254,186.963526505722,"CHH","5:27798606:27800606","CGI_shore"]
[5,27995494,27995653,160,32,0.34092624838132,0.0711705628312155,0.269755685550105,215.281894631382,"CHH","5:27993669:27995669","CGI_shore"]
[5,28467590,28467670,81,15,0.485443570284445,0.212675469824792,0.272768100459653,81.600880950202,"CHH","5:28465778:28467778","CGI_shore"]
[5,28571544,28571641,98,16,0.392097305894067,0.223897136362342,0.168200169531724,85.0655078857788,"CHH","5:28569970:28571971","CGI_shore"]
[5,28662333,28662427,95,21,0.195667769408878,0.0127876618089144,0.182880107599963,118.218565181708,"CHH","Os05g0575400","promoter","F-box protein 283","Cyclin-like F-box domain containing protein && - && -"]
[5,28719867,28719991,125,15,0.190849678096419,0.00423395242739909,0.18661572566902,103.034241088767,"CHH","5:28717963:28719964","CGI_shore"]
[5,28739671,28739834,164,23,0.457276817168555,0.18031771764546,0.276959099523095,141.900684538948,"CG","Os05g0577000","intron","Os05g0577000","Hypothetical gene && - && -"]
[5,28894810,28894990,181,56,0.257274755264192,0.127692306333104,0.129582448931088,278.036231912225,"CHH","Os05g0580500","intron","RAD21-4 PROTEIN","Similar to 10A19I.14 && sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana OX=3702 GN=SYN1 PE=2 SV=2 && PF04824:Conserved region of Rad21 / Rec8 like protein"]
[5,29154055,29154261,207,51,0.393092615465087,0.243628722794858,0.149463892670229,249.526253762056,"CHH","5:29152694:29154694","CGI_shore"]
[5,29700210,29700401,192,34,0.43029735503988,0.162594811824705,0.267702543215175,173.331475637175,"CHH","Os05g0596300","promoter","Os05g0596300","Conserved hypothetical protein && sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0520600 PE=2 SV=1 && -"]
[6,203468,203645,178,55,0.23350685546477,0.133730127272847,0.0997767281919223,277.275989875638,"CHH","Os06g0102900","promoter","Os06g0102900","Conserved hypothetical protein && - && -"]
[6,670513,674940,4428,31,0.3181349771051,0.0089042262105541,0.309230750894546,170.319675368594,"CHH","Os06g0112000","promoter","Os06g0112000","Pentatricopeptide repeat domain containing protein && sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1 && PF14432:DYW family of nucleic acid deaminases|PF13041:PPR repeat family|PF01535:PPR repeat"]
[6,848975,849149,175,56,0.278648599112036,0.19389219136461,0.0847564077474265,217.78599680184,"CHH","Os06g0114900","promoter","OsSTA164","Conserved hypothetical protein && - && -"]
[6,884932,885195,264,60,0.367431002847835,0.19595083202426,0.171480170823576,296.006606884348,"CHH","6:883610:885610","CGI_shore"]
[6,1050552,1050697,146,63,0.213205553453512,0.107623056934855,0.105582496518657,331.882251418972,"CG","Os06g0119300","promoter","Os06g0119300","Protein of unknown function DUF594 family protein && - && PF13968:Domain of unknown function (DUF4220)|PF04578:Protein of unknown function, DUF594"]
[6,1402186,1402256,71,17,0.250758162942071,0.063579555030887,0.187178607911184,135.199570268137,"CHH","6:1398195:1406736","CGI"]
[6,1402760,1402835,76,24,0.27719488926741,0.140098664026923,0.137096225240488,128.16990022635,"CHH","Os06g0126250","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 193","Receptor-like kinase, A member of the Catharanthus roseus receptor-like kinase1-like (CrRLK1L) subfamily, Control of high-affinity potassium transporters, Regulation of pollen tube growth and integrit && sp|Q9SJT0|Y2214_ARATH Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana OX=3702 GN=At2g21480 PE=3 SV=1 && PF07714:Protein tyrosine kinase|PF12819:Malectin-like domain"]
[6,1766113,1766165,53,15,0.204464516537927,0.0129535507694293,0.191510965768497,85.2302335448467,"CHH","6:1764923:1766923","CGI_shore"]
[6,1845429,1845479,51,6,0.44502909994914,0.18247329660497,0.26255580334417,33.7221312658569,"CHG","Os06g0134400","intron","Os06g0134400","Protein of unknown function DUF3615 domain containing protein && - && PF12274:Protein of unknown function (DUF3615)"]
[6,2089017,2089170,154,68,0.183771458871585,0.0422305965281119,0.141540862343473,286.177785044333,"CG","Os06g0139800","exon","Os06g0139800","Similar to Acid phosphatase (EC 3.1.3.2) 1 allozyme 1 && sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum OX=4081 GN=APS1 PE=2 SV=1 && PF03767:HAD superfamily, subfamily IIIB (Acid phosphatase)"]
[6,2290748,2290823,76,18,0.19999487734934,0.0722087351448,0.12778614220454,102.267784283005,"CHH","Os06g0143750","promoter","Os06g0143750","Hypothetical protein && sp|Q9LW86|SUT34_ARATH Probable sulfate transporter 3.4 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;4 PE=2 SV=1 && -"]
[6,2291670,2291754,85,21,0.279361818305403,0.158865137951547,0.120496680353855,98.1389479376401,"CHH","Os06g0143750","promoter","Os06g0143750","Hypothetical protein && sp|Q9LW86|SUT34_ARATH Probable sulfate transporter 3.4 OS=Arabidopsis thaliana OX=3702 GN=SULTR3;4 PE=2 SV=1 && -"]
[6,2434773,2434960,188,63,0.255359622715352,0.133381974175299,0.121977648540054,358.336352452671,"CHH","Os06g0146300","intron","Os06g0146300","Conserved hypothetical protein && - && -"]
[6,2568305,2568388,84,32,0.11639621126389,0.0166920892672968,0.0997041219965932,148.706276306579,"CHH","6:2566542:2568542","CGI_shore"]
[6,2889069,2889237,169,48,0.24397061875636,0.108233305890961,0.135737312865398,284.906212851899,"CHH","Os06g0156501","exon","Os06g0156501","Conserved hypothetical protein && - && -"]
[6,3019781,3020127,347,82,0.245340199457065,0.116332851677197,0.129007347779868,459.220080294065,"CHH","6:3018260:3020261","CGI_shore"]
[6,3130280,3130384,105,34,0.489514155661012,0.360352826701137,0.129161328959874,157.967266214053,"CHH","6:3128717:3130718","CGI_shore"]
[6,3184582,3184759,178,23,0.323866764726198,0.165369760412986,0.158497004313212,128.138087763967,"CHH","6:3183413:3185414","CGI_shore"]
[6,3319603,3319709,107,22,0.256115261419022,0.151667517749549,0.104447743669473,106.034071099955,"CHH","Os06g0166000","utr3","F-box protein 298","Cyclin-like F-box domain containing protein && sp|Q9FH99|FB302_ARATH F-box protein At5g67140 OS=Arabidopsis thaliana OX=3702 GN=At5g67140 PE=2 SV=1 && PF12937:F-box-like"]
[6,3335607,3335662,56,15,0.304411274989906,0.17266762204878,0.131743652941126,69.6462593175392,"CHH","Os06g0166400","promoter","ETHYLENE RESPONSE FACTOR 7","Similar to TINY-like protein (AP2 domain containing protein RAP2.10) (Fragment) && sp|O22174|ERF08_ARATH Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 GN=ERF008 PE=2 SV=1 && PF00847:AP2 domain"]
[6,3462594,3462739,146,48,0.0499100514354365,0.00646220642431795,0.0434478450111185,264.792694122116,"CHH","Os06g0168800","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 200","Similar to Protein kinase && sp|Q9LFP7|PBL34_ARATH Serine/threonine-protein kinase PBL34 OS=Arabidopsis thaliana OX=3702 GN=PBL34 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[6,3941025,3941202,178,53,0.418899451599279,0.219480277043079,0.1994191745562,385.706725501764,"CHH","6:3939638:3941638","CGI_shore"]
[6,3941025,3941202,178,53,0.418899451599279,0.219480277043079,0.1994191745562,385.706725501764,"CHH","6:3939746:3941747","CGI_shore"]
[6,4271589,4271672,84,26,0.0970610987575188,0.0434285301826328,0.053632568574886,112.152202816492,"CHH","6:4270458:4272459","CGI_shore"]
[6,4428231,4428308,78,24,0.215020459016278,0.129851732184088,0.0851687268321896,105.433944279958,"CHH","Os06g0187900","promoter","RSZ21A","RNA recognition motif, RNP-1 domain containing protein && sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|PF00098:Zinc knuckle"]
[6,4428231,4428308,78,24,0.215020459016278,0.129851732184088,0.0851687268321896,105.433944279958,"CHH","6:4427447:4429171","CGI"]
[6,4773345,4773454,110,41,0.11126423212707,0.0283195397961032,0.0829446923309665,225.808311452483,"CHH","6:4772994:4773596","CGI"]
[6,5175763,5176016,254,69,0.255531624163314,0.0996066679971402,0.155924956166174,399.717399567935,"CHH","6:5174518:5176518","CGI_shore"]
[6,5214702,5214961,260,65,0.322002320238899,0.187410783258348,0.13459153698055,334.968228220299,"CHH","6:5214234:5216235","CGI_shore"]
[6,5240241,5240347,107,30,0.118210501414568,0.0238707696176544,0.0943397317969138,145.720539456745,"CHH","Os06g0203702","utr5","Os06g0203702","Hypothetical protein && - && -"]
[6,5538434,5538683,250,66,0.337739019829999,0.194085514782343,0.143653505047656,313.384440337544,"CHH","6:5533749:5540901","CGI"]
[6,5618436,5618617,182,50,0.193257464068647,0.0922774031575236,0.100980060911123,233.280164178397,"CHH","6:5615636:5619468","CGI"]
[6,5780663,5780841,179,40,0.330483717345092,0.165457302519454,0.165026414825638,228.571049860543,"CHH","6:5779586:5781587","CGI_shore"]
[6,5847842,5848012,171,47,0.445841826517963,0.290373546528523,0.155468279989441,239.958800699181,"CHH","Os06g0215100","promoter","Os06g0215100","Protein of unknown function DUF1645 family protein && - && PF07816:Protein of unknown function (DUF1645)"]
[6,5856287,5856435,149,35,0.127840623618359,0.0178659208318192,0.10997470278654,202.873143347964,"CHH","6:5854593:5856594","CGI_shore"]
[6,5921766,5921927,162,50,0.229585906722144,0.129357789528162,0.100228117193982,223.568403534149,"CHH","6:5918705:5923636","CGI"]
[6,6422001,6422117,117,44,0.137106029290924,0.0653202507118094,0.0717857785791145,197.95215511159,"CHH","Os06g0224000","promoter","Os06g0224000","Protein of unknown function DUF3049 domain containing protein && - && PF11250:Fantastic Four meristem regulator"]
[6,6437762,6437946,185,50,0.12333434437361,0.0334443778063307,0.0898899665672791,311.688705341698,"CHH","6:6436850:6438851","CGI_shore"]
[6,6499898,6500095,198,52,0.368350595038173,0.221475549273219,0.146875045764954,271.372098618723,"CHH","6:6498012:6500013","CGI_shore"]
[6,6637529,6637753,225,66,0.307393344459838,0.156539869751105,0.150853474708733,309.413906242568,"CHH","6:6635806:6637806","CGI_shore"]
[6,6693898,6693971,74,16,0.250619069244378,0.0404065984798997,0.210212470764478,76.1883915791439,"CHH","Os06g0228800","intron","amino acid permease 10A, amino acid permease 17, amino acid/auxin permease 17","Amino acid transporter, transmembrane domain containing protein && sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana OX=3702 GN=AAP2 PE=1 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[6,6799333,6799480,148,29,0.185207438652346,0.0146264289430143,0.170581009709331,147.590602336418,"CHH","6:6798452:6800453","CGI_shore"]
[6,6821743,6821818,76,19,0.484120995465909,0.268072636774449,0.21604835869146,102.347687803099,"CHH","Os06g0232000","promoter","Os06g0232000","Similar to Pro-resilin && - && -"]
[6,6957507,6957774,268,87,0.108731777580094,0.0332857543723944,0.0754460232076997,423.728929223357,"CHH","6:6955847:6957848","CGI_shore"]
[6,7016705,7016819,115,44,0.16978649140599,0.0794090223589388,0.0903774690470511,211.64062025271,"CHH","6:7013680:7021352","CGI"]
[6,7099067,7099260,194,65,0.196121210749545,0.0766895096605771,0.119431701088968,355.242132342275,"CHH","6:7098554:7100554","CGI_shore"]
[6,7151786,7151840,55,20,0.235785876527562,0.149570088181789,0.0862157883457734,83.1693700759868,"CHH","Os06g0237502","intron","Os06g0237502","Similar to EMB2004 && - && PF13516:Leucine Rich repeat"]
[6,7173280,7173360,81,32,0.300941416569506,0.1913574243119,0.109583992257606,136.916022822757,"CHH","6:7173248:7173807","CGI"]
[6,7351679,7351750,72,24,0.398837544855012,0.207906284758179,0.190931260096833,171.542772188263,"CHH","6:7349936:7351936","CGI_shore"]
[6,7500906,7501068,163,49,0.141324879563316,0.0543308772434247,0.0869940023198909,211.569246014349,"CHH","Os06g0244200","promoter","Os06g0244200","Conserved hypothetical protein && - && -"]
[6,7582174,7582280,107,33,0.300524800502484,0.151941014054277,0.148583786448207,207.311707868649,"CHH","6:7581229:7583230","CGI_shore"]
[6,7750745,7750839,95,30,0.108912403533238,0.0259290231816392,0.0829833803515993,198.12526937081,"CHH","6:7749504:7751505","CGI_shore"]
[6,7988351,7988423,73,26,0.1164635973403,0.0454117785528521,0.0710518187874476,124.391232364119,"CHH","Os06g0254300","intron","Os06g0254300","Similar to EF-hand calcium bining protein && sp|Q9CAB7|PXG4_ARATH Probable peroxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=PXG4 PE=1 SV=1 && -"]
[6,7995970,7996114,145,67,0.109203261403683,0.0288128424688352,0.0803904189348473,394.486586784612,"CHH","6:7996023:7996639","CGI"]
[6,8106693,8106980,288,76,0.257056630172059,0.109578354348358,0.147478275823701,483.50136113971,"CHH","6:8105947:8107948","CGI_shore"]
[6,8115899,8116032,134,36,0.376106726919722,0.229730977139896,0.146375749779826,159.777353821172,"CHH","Os06g0255900","promoter","EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F5","Conserved hypothetical protein && sp|Q9FNR3|E70E2_ARATH Exocyst complex component EXO70E2 OS=Arabidopsis thaliana OX=3702 GN=EXO70E2 PE=1 SV=1 && -"]
[6,8438569,8438961,393,123,0.0800247898922308,0.0224971918889304,0.0575275980033004,590.313185313434,"CHH","6:8436768:8443637","CGI"]
[6,8550611,8550674,64,19,0.088243345332516,0.028342644498758,0.059900700833758,87.3341781408479,"CHH","6:8536942:8552240","CGI"]
[6,8838823,8838933,111,17,0.124688112472246,0.00982661395279844,0.114861498519448,108.693309244464,"CHH","Os06g0266400","promoter","UCLACYANIN-LIKE PROTEIN 17","Similar to chemocyanin && sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus OX=3659 PE=1 SV=1 && PF02298:Plastocyanin-like domain"]
[6,8851583,8851640,58,17,0.195757650006844,0.105459812030574,0.0902978379762691,97.7375239034273,"CHH","6:8842641:8877780","CGI"]
[6,8877871,8878002,132,40,0.589782948741083,0.44721121762308,0.142571731118003,192.76430111134,"CHH","6:8877890:8879890","CGI_shore"]
[6,8918741,8918825,85,23,0.213548670662018,0.111313716795698,0.10223495386632,104.920154193629,"CHH","Os06g0267900","promoter","Os06g0267900","NB-ARC domain containing protein && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && -"]
[6,9056172,9056249,78,19,0.198674916263093,0.0656873944803138,0.13298752178278,94.5824443796091,"CHH","6:9054843:9056843","CGI_shore"]
[6,9121659,9121829,171,38,0.32259020674094,0.146489756054229,0.176100450686711,189.480818896731,"CHH","Os06g0271300","intron","Os06g0271300","Similar to OSIGBa0140C02.5 protein && sp|A0A1P8B760|AMI4G_ARATH Probable amidase At4g34880 OS=Arabidopsis thaliana OX=3702 GN=At4g34880 PE=2 SV=1 && PF01425:Amidase"]
[6,9146080,9146238,159,12,0.526196523945797,0.173134317002441,0.353062206943356,58.9404512745252,"CG","Os06g0271900","exon","Os06g0271900","Hypothetical protein && sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1 && -"]
[6,9159616,9159672,57,13,0.85774724566164,0.704029866219599,0.153717379442041,60.537685992722,"CG","6:9159395:9160132","CGI"]
[6,9185575,9185695,121,31,0.297599731495591,0.18159926257703,0.116000468918562,141.681275389379,"CHH","6:9185230:9187231","CGI_shore"]
[6,9362893,9362960,68,26,0.110174692983497,0.0507863267657864,0.0593883662177106,117.351502039781,"CHH","6:9361960:9363961","CGI_shore"]
[6,9400042,9400393,352,134,0.198958044628393,0.103255386528936,0.0957026580994574,587.595575308349,"CHH","Os06g0275900","promoter","Adaptor protein kanadaptin","Forkhead-associated domain containing protein && sp|Q9BWU0|NADAP_HUMAN Kanadaptin OS=Homo sapiens OX=9606 GN=SLC4A1AP PE=1 SV=1 && PF00498:FHA domain"]
[6,9400042,9400393,352,134,0.198958044628393,0.103255386528936,0.0957026580994574,587.595575308349,"CHH","6:9399670:9401560","CGI"]
[6,9570291,9570489,199,61,0.0922359130740147,0.0184456520403257,0.073790261033689,289.074010534607,"CHH","6:9568789:9570789","CGI_shore"]
[6,9872692,9872843,152,31,0.216251315167653,0.0945342629148955,0.121717052252757,153.498570502359,"CHH","Os06g0282000","promoter","Os06g0282000","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q6VAA5|U89B2_STERE UDP-glycosyltransferase 89B2 OS=Stevia rebaudiana OX=55670 GN=UGT89B2 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[6,9872692,9872843,152,31,0.216251315167653,0.0945342629148955,0.121717052252757,153.498570502359,"CHH","6:9870911:9887464","CGI"]
[6,9989527,9989649,123,38,0.221647857650826,0.0984515711365783,0.123196286514248,174.809228380605,"CHH","6:9989459:9991460","CGI_shore"]
[6,10136742,10136955,214,46,0.344975799480415,0.0828853246344293,0.262090474845985,302.065951378848,"CHH","Os06g0285200","promoter","HAP3D SUBUNIT OF CCAAT-BOX BINDING COMPLEX","Similar to Leafy cotyledon 1-like L1L protein && sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2 && PF00808:Histone-like transcription factor (CBF/NF-Y) and archaeal histone"]
[6,10146154,10146239,86,16,0.234805364177015,0.100263343516248,0.134542020660767,70.0030502837969,"CHH","Os06g0285400","promoter","Os06g0285400","Similar to Serine/threonine-specific kinase like protein && sp|Q9FHG4|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1 && PF00139:Legume lectin domain|PF00069:Protein kinase domain"]
[6,10471735,10471972,238,34,0.277125108534323,0.0800512230656605,0.197073885468663,212.850626155272,"CHH","6:10469597:10471799","CGI"]
[6,10601775,10601843,69,13,0.848866216376555,0.663043185283045,0.18582303109351,55.968419133954,"CG","6:10600358:10602359","CGI_shore"]
[6,10627868,10628092,225,69,0.126128120563859,0.0632658093137384,0.062862311250121,372.212609248316,"CHH","6:10614603:10636507","CGI"]
[6,10780116,10780264,149,38,0.105608582129803,0.0315732165704153,0.074035365559388,196.886389055951,"CHH","6:10779477:10781478","CGI_shore"]
[6,11013096,11013240,145,52,0.108306070151537,0.028226551352748,0.0800795187987885,280.531405041918,"CHH","6:11012676:11014676","CGI_shore"]
[6,11050972,11051069,98,23,0.153036595447244,0.076352532084138,0.0766840633631056,114.805326330592,"CHH","Os06g0297800","intron","Os06g0297800","Similar to protein binding / zinc ion binding && sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana OX=3702 GN=At1g03370 PE=2 SV=4 && -"]
[6,11172933,11172996,64,15,0.241177749657659,0.112217271369787,0.128960478287871,87.3237664798678,"CHH","6:11172162:11174162","CGI_shore"]
[6,11259787,11259917,131,44,0.0847286660969342,0.0477978697220282,0.0369307963749061,169.22627426777,"CHH","6:11258279:11260279","CGI_shore"]
[6,11470075,11470155,81,27,0.232852542567671,0.0713761671269517,0.161476375440719,152.192055402724,"CHH","6:11468234:11470234","CGI_shore"]
[6,11535545,11535683,139,27,0.375034543256524,0.187831440021579,0.187203103234945,135.034474877859,"CHH","Os06g0305400","intron","ARBUSCULAR MYCORRHIZAL SPECIFIC MARKER 11","Peptidase A1 domain containing protein && sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana OX=3702 GN=PCS1 PE=2 SV=1 && PF14543:Xylanase inhibitor N-terminal"]
[6,11602664,11602777,114,35,0.216120390178747,0.0936723881186775,0.122448002060069,166.75571390476,"CHH","6:11602722:11604723","CGI_shore"]
[6,11653630,11653697,68,21,0.102489198698493,0.0390634762665659,0.0634257224319274,90.4218186249057,"CHH","6:11653663:11657773","CGI"]
[6,11724170,11724267,98,40,0.292653266617862,0.181579069127939,0.111074197489923,183.267042578294,"CHH","6:11722894:11724895","CGI_shore"]
[6,11858619,11858699,81,27,0.271988284492929,0.189930730349205,0.082057554143724,119.105253873101,"CHH","6:11858621:11859485","CGI"]
[6,11938532,11938605,74,24,0.0565081669243674,0.0052919812489896,0.0512161856753778,118.798813599351,"CHH","6:11937990:11939990","CGI_shore"]
[6,11965499,11965711,213,55,0.152811424508619,0.0668262286358357,0.0859851958727834,272.361532410197,"CHH","Os06g0312950","promoter","Os06g0312950","Hypothetical protein && - && -"]
[6,12101832,12101919,88,25,0.151836639603822,0.085216188448294,0.066620451155528,124.925301447761,"CHH","6:12100253:12102253","CGI_shore"]
[6,12226309,12226359,51,9,0.896441034539988,0.754819117136171,0.141621917403818,31.0767126094985,"CG","6:12225767:12227767","CGI_shore"]
[6,12487112,12487262,151,48,0.212598124206569,0.0299613313571089,0.18263679284946,238.188050778608,"CHH","6:12487142:12491494","CGI"]
[6,12628915,12629062,148,47,0.142773574500792,0.0648066027073552,0.0779669717934371,200.139708864722,"CHH","6:12628670:12630670","CGI_shore"]
[6,12943599,12943671,73,20,0.0674096987394095,0.0123395428200707,0.0550701559193388,84.2485180342031,"CHH","6:12943506:12945507","CGI_shore"]
[6,12987566,12987713,148,53,0.174919409841417,0.0944210585722533,0.0804983512691635,232.540704604473,"CHH","6:12987031:12989032","CGI_shore"]
[6,13029324,13029469,146,43,0.162731057005622,0.0817286456672662,0.0810024113383554,205.842943582195,"CHH","6:13028350:13030351","CGI_shore"]
[6,13054448,13054549,102,22,0.205477958859566,0.0985642364266655,0.106913722432901,116.211495665675,"CHH","6:13053074:13055075","CGI_shore"]
[6,13142129,13142184,56,18,0.121789540276345,0.0116209197930839,0.110168620483261,91.8114579805744,"CHH","6:13140337:13142338","CGI_shore"]
[6,13237196,13237265,70,17,0.129127596331817,0.0574864127552707,0.0716411835765465,81.5875564370988,"CHH","6:13236690:13238690","CGI_shore"]
[6,13535912,13536002,91,21,0.0658553595719767,5.60185394338167E-3,0.0602535056285951,94.963880889173,"CHH","6:13534477:13536477","CGI_shore"]
[6,13567819,13567888,70,4,0.617494620318236,0.142929497257132,0.474565123061104,20.2071992648692,"CHG","6:13566038:13568039","CGI_shore"]
[6,13836144,13836383,240,47,0.431866033004793,0.231109159908808,0.200756873095984,304.993837193182,"CHH","6:13835941:13837942","CGI_shore"]
[6,13864342,13864394,53,21,0.231744914342569,0.112386182778926,0.119358731563643,101.615644633324,"CHH","6:13864356:13866357","CGI_shore"]
[6,14184506,14184682,177,35,0.127253297036431,0.0340366360378871,0.0932166609985443,167.200412270124,"CHH","6:14184203:14184672","CGI"]
[6,14238014,14238291,278,86,0.115796107736399,0.0400347345708269,0.0757613731655719,440.441519607564,"CHH","6:14236148:14238149","CGI_shore"]
[6,14397752,14397855,104,25,0.15482157634021,0.0214574878627042,0.133364088477506,113.040809248253,"CHH","6:14395058:14401011","CGI"]
[6,14459540,14459630,91,34,0.0771285886436529,0.0204215977033745,0.0567069909402784,159.805811495521,"CHH","6:14458774:14460774","CGI_shore"]
[6,14474233,14474406,174,39,0.834618024390958,0.631900987189394,0.202717037201564,228.025720150303,"CG","6:14474156:14475081","CGI"]
[6,14816666,14816854,189,45,0.0869170713057904,0.0275683309532826,0.0593487403525079,210.576093903354,"CHH","6:14815800:14817801","CGI_shore"]
[6,14881506,14881589,84,24,0.185700752560366,0.0788724489869511,0.106828303573415,140.854484552288,"CHH","6:14880081:14882082","CGI_shore"]
[6,14954775,14954882,108,28,0.0538931146227754,0.0207477179241388,0.0331453966986366,130.620726453464,"CHH","Os06g0361500","utr3","Os06g0361500","Similar to cDNA clone:J013000C15, full insert sequence && - && -"]
[6,15343576,15343643,68,21,0.121454014905586,0.0564913610418602,0.0649626538637254,77.3762295238104,"CHH","Os06g0367100","intron","Os06g0367100","Glycoside hydrolase, subgroup, catalytic core domain containing protein && sp|D2WL32|GLGB3_ARATH 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SBE3 PE=1 SV=1 && PF02806:Alpha amylase, C-terminal all-beta domain|PF00128:Alpha amylase, catalytic domain|PF02922:Carbohydrate-binding module 48 (Isoamylase N-terminal domain)"]
[6,15605599,15605956,358,93,0.0975415317468157,0.0244264017561915,0.0731151299906242,423.1501327867,"CHH","6:15601526:15607492","CGI"]
[6,15662502,15662659,158,60,0.22114343379008,0.0919243002760367,0.129219133514043,274.052958499563,"CHH","6:15660865:15662866","CGI_shore"]
[6,15722225,15722442,218,69,0.154294905538849,0.0639047199074443,0.0903901856314046,303.523131515836,"CHH","6:15722200:15724201","CGI_shore"]
[6,16019502,16019664,163,53,0.208166165444667,0.067905686082427,0.14026047936224,275.197932955053,"CHH","Os06g0476200","intron","Os06g0476200","Similar to Phosphoglucomutase precursor (EC 5.4.2.2) && sp|Q88C93|ALGC_PSEPK Phosphomannomutase/phosphoglucomutase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) OX=160488 GN=algC PE=3 SV=1 && PF02878:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I|PF02880:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III|PF02879:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II"]
[6,16131199,16131258,60,17,0.11138465431081,0.0397295489003703,0.0716551054104395,80.9574306106857,"CHH","6:16129371:16131372","CGI_shore"]
[6,16327602,16327772,171,57,0.252429165632396,0.140543836306684,0.111885329325712,264.209719939272,"CHH","6:16327419:16329419","CGI_shore"]
[6,16395911,16395996,86,13,0.798167255890729,0.415536545320571,0.382630710570158,76.3591485471151,"CG","6:16395828:16397828","CGI_shore"]
[6,16436392,16436561,170,34,0.235057292770565,0.0714679767952187,0.163589315975346,218.782580800588,"CHH","6:16435346:16437346","CGI_shore"]
[6,16801094,16801158,65,23,0.585792406998319,0.444260442631816,0.141531964366503,103.593705280623,"CHH","6:16800776:16802777","CGI_shore"]
[6,17122593,17122711,119,32,0.0933222652400966,0.029313567329093,0.0640086979110037,152.842129678734,"CHH","6:17122352:17124353","CGI_shore"]
[6,17286509,17286567,59,5,0.468269225529355,0.186730995234453,0.281538230294902,22.5635553598377,"CHG","6:17286111:17288112","CGI_shore"]
[6,17607606,17607686,81,34,0.107861099486037,0.0471031405856691,0.0607579589003683,150.601479522808,"CHH","Os06g0499900","intron","Os06g0499900","Similar to Dihydrolipoamide acetyltransferase (E2) subunit of PDC (Fragment) && sp|Q0WQF7|ODP21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LTA3 PE=1 SV=2 && PF00198:2-oxoacid dehydrogenases acyltransferase (catalytic domain)|PF02817:e3 binding domain|PF00364:Biotin-requiring enzyme"]
[6,17608856,17609031,176,45,0.237003953387984,0.128209110895303,0.108794842492681,227.29568922483,"CHH","Os06g0500100","promoter","Os06g0500100","Conserved hypothetical protein && - && -"]
[6,17641466,17641524,59,24,0.0894735061132012,0.0412231044322665,0.0482504016809347,124.007036142866,"CHH","6:17639858:17641858","CGI_shore"]
[6,17806333,17806546,214,73,0.121211105661438,0.0376602165597224,0.0835508891017155,371.363570242304,"CHH","6:17804937:17806937","CGI_shore"]
[6,17988463,17988590,128,43,0.160775888084762,0.0873376457344313,0.0734382423503306,184.945691409884,"CHH","6:17988333:17990333","CGI_shore"]
[6,18154952,18155353,402,135,0.257598402329422,0.091770347158191,0.165828055171231,903.992298170918,"CHH","Os06g0508800","promoter","Os06g0508800","Conserved hypothetical protein && - && -"]
[6,18164805,18164988,184,70,0.159027632623921,0.0682088092881182,0.0908188233358027,387.232595231831,"CHH","Os06g0509100","utr5","Os06g0509100","Serine/threonine protein kinase-related domain containing protein && sp|Q6L5F7|MPK17_ORYSJ Mitogen-activated protein kinase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK17 PE=2 SV=2 && -"]
[6,18797463,18797933,471,81,0.309084866054994,0.0619338177626484,0.247151048292345,594.746383859094,"CHH","6:18796202:18798202","CGI_shore"]
[6,18878437,18878656,220,86,0.0422305230365098,0.0149222792323235,0.0273082438041863,345.211342385428,"CHH","Target=RETROFIT_I-int:3179-3330;Class=LTR/Copia","repeat"]
[6,18982184,18982275,92,20,0.223152122697202,0.101506610809033,0.121645511888169,103.596449223079,"CHH","Os06g0518300","promoter","Os06g0518300","Hypothetical conserved gene && - && -"]
[6,19193865,19194029,165,48,0.58288732132724,0.281638085126085,0.301249236201155,274.78745209434,"CHH","Os06g0521000","promoter","Os06g0521000","Homeodomain-like containing protein && - && -"]
[6,19333437,19333535,99,29,0.087543823202827,0.0267472359418331,0.0607965872609939,124.034670078089,"CHH","6:19333307:19335308","CGI_shore"]
[6,19414019,19414258,240,57,0.321598974579235,0.118212533580446,0.203386440998789,358.851974850585,"CHH","Os06g0524400","promoter","trichome birefringence-like 49, trichome birefringence-like 50","Protein of unknown function DUF231, plant domain containing protein && sp|Q8H1R3|TBL24_ARATH Protein trichome birefringence-like 24 OS=Arabidopsis thaliana OX=3702 GN=TBL24 PE=2 SV=1 && PF14416:PMR5 N terminal Domain|PF13839:GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"]
[6,19442810,19442862,53,22,0.125297250922563,0.0604146834481216,0.0648825674744412,110.361923044086,"CHH","Os06g0525000","promoter","Os06g0525000","Conserved hypothetical protein && - && -"]
[6,19525533,19525622,90,25,0.137433783451131,0.0312441129484822,0.106189670502649,127.044350744638,"CHH","6:19524723:19526724","CGI_shore"]
[6,19569501,19569648,148,43,0.16360073077234,0.057924661365576,0.105676069406764,250.103495360536,"CHH","Os06g0527500","TES","Os06g0527500","Conserved hypothetical protein && sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana OX=3702 GN=CNGC1 PE=1 SV=1 && -"]
[6,19610668,19610764,97,18,0.534749081887202,0.288640084312231,0.246108997574971,93.0840967798651,"CHG","Os06g0528350","utr5","Os06g0528350","Conserved hypothetical protein && - && -"]
[6,19793795,19793949,155,53,0.169274294932539,0.0772812667056384,0.0919930282269007,285.847200875663,"CHH","6:19792053:19794054","CGI_shore"]
[6,19912783,19913128,346,113,0.170380455486025,0.082121114376798,0.0882593411092266,524.954692167963,"CHH","6:19913060:19915061","CGI_shore"]
[6,19997968,19998038,71,23,0.373477333592556,0.223970079028743,0.149507254563813,115.691477143918,"CHH","Os06g0534500","promoter","Os06g0534500","Zinc finger, RING-type domain containing protein && sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1 && PF13639:Ring finger domain"]
[6,20078073,20078145,73,17,0.0915249391733763,0.0232310457282178,0.0682938934451585,78.1945305449306,"CHH","6:20077823:20079823","CGI_shore"]
[6,20198379,20198590,212,72,0.408739322976249,0.231220497977251,0.177518824998998,494.315750656424,"CHH","6:20198171:20200171","CGI_shore"]
[6,20431263,20431327,65,19,0.10653745312572,0.0170380369785928,0.0894994161471275,84.4431538143589,"CHH","6:20431205:20431600","CGI"]
[6,20703652,20703826,175,51,0.364310137673069,0.131081734852965,0.233228402820103,299.097682776444,"CHH","6:20698315:20707196","CGI"]
[6,20761353,20761580,228,73,0.615062807155505,0.371764322214795,0.24329848494071,538.215334747735,"CG","Os06g0548500","exon","Os06g0548500","Conserved hypothetical protein && - && -"]
[6,20761508,20761639,132,23,0.127906558514847,0.0240248628391036,0.103881695675744,131.193582573909,"CHH","6:20761581:20763582","CGI_shore"]
[6,20987393,20987640,248,66,0.279163164274495,0.0662303393607008,0.212932824913794,464.501693514513,"CHH","6:20985939:20987939","CGI_shore"]
[6,21163939,21164110,172,51,0.119996946991896,0.0406451346429577,0.0793518123489387,273.392541886849,"CHH","6:21163931:21165932","CGI_shore"]
[6,21272850,21272918,69,17,0.0716445122053685,0.00909485198733846,0.06254966021803,76.0387119335475,"CHH","6:21271046:21273046","CGI_shore"]
[6,21503831,21503909,79,14,0.237580526624112,0.0588520704162013,0.178728456207911,75.175980483639,"CHH","6:21503516:21505517","CGI_shore"]
[6,21633408,21633474,67,22,0.0998745057882301,0.0105467428221155,0.0893277629661146,104.704914190664,"CHH","6:21633023:21633460","CGI"]
[6,21663091,21663255,165,39,0.381615579051478,0.220121775306469,0.161493803745009,198.36627752796,"CHH","6:21662939:21664939","CGI_shore"]
[6,21759546,21759729,184,51,0.294156263948934,0.167967688854076,0.126188575094858,294.609001913383,"CHH","Os06g0565100","promoter","OsMAX1b","Cytochrome P450 family member,  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1 && sp|B9DFU2|MAX1_ARATH Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,21860030,21860260,231,54,0.334445073078332,0.209875358719297,0.124569714359035,245.5979479171,"CHH","6:21859201:21861202","CGI_shore"]
[6,21901830,21901886,57,29,0.16283947116957,0.0803594037261869,0.0824800674433829,121.026461884418,"CHH","Os06g0567666","exon","Os06g0567666","Hypothetical gene && - && -"]
[6,21951957,21952048,92,17,0.397939052771983,0.195890973600224,0.202048079171759,88.2280133264533,"CHH","6:21951559:21953560","CGI_shore"]
[6,21970614,21970750,137,33,0.39532068035809,0.1635864084731,0.231734271884991,168.934207551508,"CHH","6:21968774:21970775","CGI_shore"]
[6,21970630,21970738,109,12,0.683985953384805,0.383082986877824,0.300902966506981,54.3910523970434,"CHG","6:21968774:21970775","CGI_shore"]
[6,22086465,22086618,154,35,0.236602376772815,0.0753873301399339,0.161215046632881,191.717573231322,"CHH","6:22086366:22086629","CGI"]
[6,22129494,22129618,125,39,0.281588487729491,0.165068164165347,0.116520323564143,191.809542342727,"CHH","6:22127993:22129993","CGI_shore"]
[6,22495378,22495455,78,20,0.112090371696951,0.0131516583958409,0.0989387133011099,118.852278310457,"CHH","Os06g0576800","promoter","Os06g0576800","Myb/SANT-like domain domain containing protein && - && -"]
[6,22580686,22580942,257,45,0.421473968651801,0.137312431701629,0.284161536950172,279.22731447395,"CHH","6:22579773:22581773","CGI_shore"]
[6,22752472,22752658,187,54,0.141366278167315,0.0238050551689252,0.11756122299839,271.839454739512,"CHH","6:22752648:22754649","CGI_shore"]
[6,22766572,22766775,204,44,0.155383855951636,0.0377624109879332,0.117621444963703,256.389167536637,"CHH","6:22764723:22766724","CGI_shore"]
[6,22975290,22975440,151,46,0.114571677102908,0.0264155755551775,0.0881561015477306,245.025432667065,"CHH","6:22973394:22975395","CGI_shore"]
[6,23000976,23001156,181,23,0.423969897888567,0.25996457401543,0.164005323873136,99.3769412199038,"CHH","6:22999278:23001279","CGI_shore"]
[6,23000976,23001156,181,23,0.423969897888567,0.25996457401543,0.164005323873136,99.3769412199038,"CHH","Os06g0587100","intron","Os06g0587100","Conserved hypothetical protein && - && -"]
[6,23102179,23102279,101,19,0.295722093339677,0.0134739992682828,0.282248094071394,105.34048686194,"CHH","6:23102170:23104171","CGI_shore"]
[6,23289334,23289439,106,29,0.114719037286152,0.0160674380713964,0.0986515992147557,120.961873741565,"CHH","6:23253707:23334982","CGI"]
[6,23300789,23300870,82,16,0.443485225156218,0.217029494541806,0.226455730614411,74.1723940926022,"CHG","Os06g0592951","promoter","Os06g0592951","Conserved hypothetical protein && - && -"]
[6,23721382,23721560,179,39,0.249526936958973,0.116054155533797,0.133472781425176,198.201042543756,"CHH","6:23720440:23722441","CGI_shore"]
[6,23782964,23783055,92,26,0.218870423585745,0.106050849257965,0.112819574327779,116.485241258283,"CHH","6:23747306:23806705","CGI"]
[6,23955495,23955591,97,29,0.238063097080193,0.114902968818995,0.123160128261198,132.565571031852,"CHH","6:23955516:23957516","CGI_shore"]
[6,24145259,24145400,142,41,0.226827614215271,0.125871619642373,0.100955994572898,196.382424153251,"CHH","Os06g0607200","intron","Os06g0607200","Similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal && sp|Q8R0F9|S14L4_MOUSE SEC14-like protein 4 OS=Mus musculus OX=10090 GN=Sec14l4 PE=1 SV=1 && -"]
[6,24182596,24182686,91,31,0.129426693679949,0.042208627958227,0.0872180657217222,130.300708409926,"CG","6:24178973:24182904","CGI"]
[6,24465938,24466094,157,33,0.139682949357098,0.0400158444500381,0.09966710490706,173.521143155503,"CHH","6:24465208:24467208","CGI_shore"]
[6,24521494,24521741,248,69,0.462993923865521,0.238930617195145,0.224063306670375,332.432448455633,"CHH","6:24519873:24521874","CGI_shore"]
[6,24874757,24874814,58,15,0.215427799821933,0.100411175942951,0.115016623878982,71.3832104301244,"CHH","6:24874485:24876486","CGI_shore"]
[6,24875214,24875281,68,27,0.152277789031375,0.0652484838260216,0.0870293052053536,120.206400625579,"CHH","Os06g0619066","intron","Os06g0619066","Hypothetical protein && sp|Q25AG2|LERK4_ORYSI G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK4 PE=3 SV=1 && -"]
[6,24912116,24912189,74,9,0.489119031058938,0.148996007303468,0.34012302375547,41.7603479684804,"CHG","6:24906171:24930183","CGI"]
[6,25027761,25027839,79,11,0.145809826267173,0.0144779984094939,0.13133182785768,53.5246076989271,"CHG","Os06g0622500","exon","ANAPHASE PROMOTING COMPLEX 3","Similar to predicted protein && sp|Q8LGU6|CD27B_ARATH Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana OX=3702 GN=CDC27B PE=1 SV=1 && PF00515:Tetratricopeptide repeat"]
[6,25517346,25517441,96,21,0.193322089075825,0.0634788844963254,0.1298432045795,129.91046481746,"CHH","6:25517098:25517375","CGI"]
[6,25866687,25866885,199,73,0.216496638242912,0.115160710174555,0.101335928068357,356.510050705527,"CHH","Os06g0636600","promoter","HT1","Protein kinase, core domain containing protein && sp|Q2MHE4|HT1_ARATH Serine/threonine/tyrosine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1 && -"]
[6,25947623,25947816,194,69,0.114551508286307,0.0326655456365957,0.0818859626497112,254.483821305408,"CG","6:25946432:25950284","CGI"]
[6,26066471,26066588,118,50,0.169237119194651,0.0197243326650678,0.149512786529584,238.261160978333,"CHH","Os06g0640599","promoter","Os06g0640599","Hypothetical protein && sp|A0A0N9HT29|C71BE_SINHE Desmethyl-deoxy-podophyllotoxin synthase OS=Sinopodophyllum hexandrum OX=93608 GN=CYP71BE54 PE=1 SV=1 && PF00067:Cytochrome P450"]
[6,26108964,26109072,109,42,0.109890501932256,0.0505453388359979,0.059345163096258,188.079200423246,"CHH","Os06g0641932","utr5","Os06g0641932","Hypothetical protein && sp|A0A0N9HT29|C71BE_SINHE Desmethyl-deoxy-podophyllotoxin synthase OS=Sinopodophyllum hexandrum OX=93608 GN=CYP71BE54 PE=1 SV=1 && -"]
[6,26271097,26271194,98,34,0.429396456762586,0.260055168410227,0.16934128835236,248.510782027127,"CHH","6:26270916:26272916","CGI_shore"]
[6,26694664,26694782,119,41,0.518648568502181,0.368913113941856,0.149735454560325,223.750871487417,"CHH","Os06g0652200","promoter","Os06g0652200","Similar to Hemolysin-III related family protein && sp|Q6ETK9|ADPO2_ORYSJ Heptahelical transmembrane protein ADIPOR2 OS=Oryza sativa subsp. japonica OX=39947 GN=ADIPOR2 PE=2 SV=1 && PF03006:Haemolysin-III related"]
[6,26819776,26819865,90,29,0.131724705109111,0.0461726566669412,0.08555204844217,152.741958660354,"CHH","6:26819587:26819802","CGI"]
[6,26902395,26902630,236,74,0.371270106170397,0.104978154032365,0.266291952138031,470.768876575285,"CHH","Os06g0656000","promoter","Os06g0656000","Hypothetical conserved gene && sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana OX=3702 GN=At1g73050 PE=2 SV=1 && PF00732:GMC oxidoreductase"]
[6,27067818,27068046,229,42,0.376100567256066,0.207585880074528,0.168514687181538,219.885755625185,"CHH","Os06g0658400","promoter","Os06g0658400","Similar to HAT dimerisation domain-containing protein-like && - && -"]
[6,27094381,27094464,84,21,0.185842159373003,0.0844916044104675,0.101350554962535,96.6080624015768,"CHH","6:27093156:27095157","CGI_shore"]
[6,27419075,27419154,80,14,0.187347442429784,0.0123072349743441,0.17504020745544,74.8960415322592,"CHH","Os06g0664000","promoter","Os06g0664000","Hypothetical gene && - && -"]
[6,27465658,27465801,144,22,0.280803216168467,0.1254412825493,0.155361933619167,132.083771300091,"CHH","6:27464503:27466503","CGI_shore"]
[6,27967734,27967911,178,51,0.0774126286787718,0.0100781298348413,0.0673344988439305,242.363478355158,"CHH","Os06g0673700","intron","Os06g0673700","Hypothetical protein && - && -"]
[6,27994283,27994498,216,70,0.36790775077462,0.207692185260926,0.160215565513694,416.109340607137,"CHH","6:27980561:28004208","CGI"]
[6,28150030,28150196,167,68,0.188334131875313,0.103787725366231,0.0845464065090826,308.069650280108,"CHH","Os06g0677600","promoter","Os06g0677600","Like-Sm ribonucleoprotein, core family protein && - && PF01423:LSM domain"]
[6,28733577,28733784,208,69,0.248083778082557,0.0850685561011411,0.163015221981416,443.777232229807,"CG","Os06g0688800","TSS","Os06g0688800","Hypothetical conserved gene && - && -"]
[6,28851515,28851594,80,22,0.437465431571896,0.294202377309816,0.14326305426208,107.740816304077,"CHH","Os06g0691800","promoter","Os06g0691800","Leucine-rich repeat receptor-like kinase, Herbivore-induced defense respons && sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana OX=3702 GN=PSY1R PE=1 SV=1 && PF00069:Protein kinase domain|PF13855:Leucine rich repeat"]
[6,29302737,29302803,67,23,0.121848139430834,0.0679670121280262,0.0538811273028079,108.640700044571,"CHH","6:29242556:29337515","CGI"]
[6,29379935,29380079,145,59,0.274266428229148,0.152147604964269,0.122118823264878,330.812473925602,"CHH","Os06g0699100","promoter","ACYLTRANSFERASE 20","Transferase domain containing protein && sp|Q7XHC4|AT15_ORYSJ Acyl transferase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=AT15 PE=2 SV=1 && -"]
[6,29380933,29381019,87,33,0.0583206407751313,0.0057325737037663,0.052588067071365,143.766208872222,"CHH","6:29375540:29382630","CGI"]
[6,29570457,29570626,170,38,0.146293531972503,0.0437043375836372,0.102589194388866,177.331714261837,"CHH","6:29569854:29571854","CGI_shore"]
[6,29685189,29685457,269,94,0.150464647310636,0.0470444124350581,0.103420234875578,487.813155867165,"CHH","6:29684821:29685635","CGI"]
[6,29743590,29743857,268,69,0.28652546956629,0.075857719368547,0.210667750197743,478.510696751502,"CHH","Os06g0704400","promoter","Os06g0704400","Transposase, MuDR, plant domain containing protein && - && PF04434:SWIM zinc finger|PF03108:MuDR family transposase|PF10551:MULE transposase domain"]
[6,30240526,30240595,70,17,0.207319540033018,0.10866746493773,0.0986520750952877,85.3526169301719,"CHH","6:30238987:30240987","CGI_shore"]
[6,30957292,30957477,186,64,0.0693279667561821,0.0291244260990609,0.0402035406571212,250.421029561475,"CHH","Os06g0727600","promoter","Os06g0727600","Similar to Lysine ketoglutarate reductase trans-splicing related 1 && - && PF05212:Protein of unknown function (DUF707)"]
[6,30957292,30957477,186,64,0.0693279667561821,0.0291244260990609,0.0402035406571212,250.421029561475,"CHH","6:30955522:30957522","CGI_shore"]
[6,30976977,30977183,207,49,0.170504361352482,0.0462856765369866,0.124218684815495,290.868400062113,"CHH","Os06g0727800","intron","Os06g0727800","Similar to predicted protein && - && PF05212:Protein of unknown function (DUF707)"]
[6,31131303,31131756,454,149,0.208965667152667,0.0953557768430573,0.11360989030961,771.332577384098,"CHH","6:31130807:31132807","CGI_shore"]
[7,65153,65235,83,40,0.205969422469727,0.0760502773062424,0.129919145163485,238.468409596268,"CHH","7:65176:65556","CGI"]
[7,190221,190430,210,51,0.278313870476068,0.133059671610962,0.145254198865106,271.53657307182,"CHH","7:189570:191570","CGI_shore"]
[7,499277,499530,254,71,0.349151656862691,0.174343734245349,0.174807922617342,410.513642274367,"CHH","7:499078:501079","CGI_shore"]
[7,668471,668532,62,17,0.183617803222498,0.016930681112456,0.166687122110042,97.3118977020995,"CHH","Os07g0111800","intron","Os07g0111800","Conserved hypothetical protein && - && -"]
[7,826688,826787,100,29,0.142219408494254,0.0152194872576562,0.126999921236598,138.651978068367,"CHH","7:826524:828525","CGI_shore"]
[7,970595,970790,196,31,0.307276746646232,0.171989268266785,0.135287478379447,144.806748887124,"CHH","Os07g0118000","promoter","Os07g0118000","Hypothetical conserved gene && - && PF00931:NB-ARC domain|PF18052:Rx N-terminal domain"]
[7,972311,972436,126,23,0.417766530575886,0.263213259254008,0.154553271321878,115.90771781826,"CHH","Os07g0118200","promoter","Os07g0118200","Protein of unknown function DUF538 domain containing protein && - && PF04398:Protein of unknown function, DUF538"]
[7,1148214,1148375,162,49,0.609026074385603,0.473719101303162,0.135306973082441,233.623253982944,"CG","Os07g0122000","promoter","Os07g0122000","Protein of unknown function DUF1719, Oryza sativa family protein && - && PF08224:Domain of unknown function (DUF1719)"]
[7,1681908,1682003,96,22,0.388583386857601,0.242576625670978,0.146006761186623,118.746893847969,"CHH","7:1680458:1682459","CGI_shore"]
[7,1728144,1728244,101,18,0.130118101485924,0.0257694694535132,0.104348632032411,81.6265565662,"CHH","7:1726246:1728246","CGI_shore"]
[7,1742179,1742372,194,70,0.177251024968406,0.07374159836698,0.103509426601426,360.298544092042,"CHH","7:1742303:1744304","CGI_shore"]
[7,2239776,2239943,168,54,0.318052310039877,0.202222073849748,0.115830236190129,217.073059561355,"CHH","7:2238901:2240902","CGI_shore"]
[7,2422052,2422159,108,25,0.778810006578126,0.458601763202878,0.320208243375248,118.487623372069,"CG","7:2421899:2423899","CGI_shore"]
[7,2562834,2562903,70,23,0.0786650364674924,0.00505384012235878,0.0736111963451336,107.622279420185,"CHH","7:2560866:2562867","CGI_shore"]
[7,2717238,2717376,139,23,0.567420967277962,0.350499124719341,0.216921842558622,92.997495305612,"CHG","Os07g0151700","promoter","Os07g0151700","Conserved hypothetical protein && - && -"]
[7,2792670,2792929,260,86,0.196462942014829,0.0964911686546241,0.0999717733602049,441.271298867791,"CHH","7:2791962:2793962","CGI_shore"]
[7,3118636,3118781,146,28,0.484750010079506,0.250225836011266,0.23452417406824,160.274898218728,"CHH","7:3116841:3118841","CGI_shore"]
[7,3280384,3280552,169,43,0.176970380933339,0.0282027454450422,0.148767635488297,275.891021650707,"CHH","7:3280222:3281673","CGI"]
[7,3618064,3618167,104,30,0.0479179367027869,0.00331955976461218,0.0445983769381747,119.537200443166,"CHH","7:3616446:3618447","CGI_shore"]
[7,3751505,3751629,125,27,0.260310488895715,0.106786934099148,0.153523554796567,137.018785998613,"CHH","7:3749788:3751788","CGI_shore"]
[7,3786472,3786656,185,79,0.0849489497792493,0.0332626904866586,0.0516862592925907,349.377890507711,"CHH","7:3786233:3788831","CGI"]
[7,3914715,3914796,82,17,0.210716554566125,0.111875843904311,0.0988407106618145,81.7776085853311,"CHH","7:3913457:3918324","CGI"]
[7,4060040,4060213,174,49,0.096179459291106,0.00734692039285647,0.0888325388982495,243.674560252807,"CHH","7:4059039:4061039","CGI_shore"]
[7,4099458,4099753,296,98,0.170187992288234,0.0246888074269876,0.145499184861247,658.777491989356,"CHH","7:4099467:4103092","CGI"]
[7,4136979,4137155,177,42,0.0863417931889305,0.0133333844998172,0.0730084086891133,266.343742319702,"CHH","7:4137039:4139039","CGI_shore"]
[7,4216103,4216205,103,30,0.328003301736313,0.185861589549322,0.14214171218699,161.895148777472,"CHH","7:4215881:4217882","CGI_shore"]
[7,4284648,4284785,138,35,0.0641422273187612,0.00750014854331854,0.0566420787754427,153.438050896417,"CHH","7:4283352:4285352","CGI_shore"]
[7,4347878,4347957,80,33,0.142497314367345,0.0636959045510926,0.0788014098162522,140.962513239693,"CHH","7:4347362:4349362","CGI_shore"]
[7,4542330,4542609,280,47,0.256924435197975,0.0217188138408913,0.235205621357084,328.802008832749,"CHH","7:4541098:4543099","CGI_shore"]
[7,4595996,4596270,275,57,0.205223106701112,0.044746905807926,0.160476200893186,317.527228816962,"CHH","7:4595036:4597036","CGI_shore"]
[7,4671361,4671544,184,46,0.106972010839872,0.0398017695913815,0.0671702412484907,247.314592607851,"CHH","7:4669947:4671948","CGI_shore"]
[7,4777575,4777789,215,88,0.203122302151558,0.0967174049946039,0.106404897156954,440.781453679395,"CHH","Os07g0189800","promoter","Os07g0189800","Similar to JHL07K02.7 protein && sp|Q67YC9|Y4141_ARATH Uncharacterized protein At4g14100 OS=Arabidopsis thaliana OX=3702 GN=At4g14100 PE=2 SV=1 && -"]
[7,4897807,4897980,174,34,0.212057993875037,0.0828139726671407,0.129244021207896,175.66943057461,"CHH","7:4896006:4898007","CGI_shore"]
[7,5032384,5032488,105,28,0.225005107268932,0.0991329824802562,0.125872124788676,127.223700439961,"CHH","7:5023693:5033914","CGI"]
[7,5702323,5702429,107,40,0.291457950109924,0.13632726196524,0.155130688144684,243.55009899393,"CHH","7:5701036:5703037","CGI_shore"]
[7,5866635,5866771,137,48,0.126483124895095,0.0555164925127896,0.0709666323823052,252.526009467224,"CHH","7:5866168:5868168","CGI_shore"]
[7,5940257,5940309,53,19,0.114503367590634,0.0473704184035616,0.0671329491870725,69.4001789535032,"CHH","Os07g0209600","exon","Os07g0209600","Similar to Zinc finger transcription factor ZF1 && sp|Q42430|ZFP1_WHEAT Zinc finger protein 1 OS=Triticum aestivum OX=4565 PE=2 SV=1 && PF13912:C2H2-type zinc finger"]
[7,5948570,5948669,100,26,0.236530496767659,0.10734818903692,0.12918230773074,120.124870694416,"CHH","7:5947212:5949213","CGI_shore"]
[7,6089463,6089575,113,33,0.0896431801428816,0.0111030674028207,0.078540112740061,181.592163603383,"CHH","Os07g0211601","exon","Os07g0211601","Hypothetical gene && sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IPT3 PE=1 SV=1 && PF01715:IPP transferase"]
[7,6262660,6262786,127,48,0.13002962121984,0.048511346062781,0.0815182751570589,237.266446511273,"CHH","7:6261645:6263646","CGI_shore"]
[7,6345230,6345327,98,35,0.0736867940716771,0.0473185152583224,0.0263682788133547,130.020961175727,"CHH","7:6345017:6347017","CGI_shore"]
[7,6552887,6553165,279,81,0.143136730268498,0.0189239896837708,0.124212740584727,398.355967814564,"CHH","7:6548967:6553510","CGI"]
[7,6688415,6688583,169,37,0.301349001667645,0.105510264485008,0.195838737182637,202.6262276759,"CHH","7:6688393:6690393","CGI_shore"]
[7,6890324,6890494,171,51,0.0901073723450031,0.0124509117701165,0.0776564605748866,324.370346340606,"CHH","7:6889118:6891119","CGI_shore"]
[7,6973044,6973278,235,56,0.11499401562913,0.0311996947753201,0.0837943208538103,311.85876912018,"CHH","7:6972901:6973128","CGI"]
[7,7293839,7293917,79,21,0.111390274836018,0.0398686065132686,0.0715216683227489,86.7135408278905,"CG","7:7289640:7294277","CGI"]
[7,7620131,7620258,128,63,0.130152070692998,0.0528751433734186,0.0772769273195792,304.690984139172,"CHH","7:7620237:7621785","CGI"]
[7,7620962,7621268,307,105,0.297434173035044,0.155680702113371,0.141753470921672,506.40189335192,"CHH","7:7620237:7621785","CGI"]
[7,7645879,7646049,171,65,0.0933853400082598,0.0283281830959153,0.0650571569123444,241.121813707038,"CHH","7:7645836:7647837","CGI_shore"]
[7,7922370,7922427,58,16,0.328785458157513,0.105901405519763,0.222884052637751,89.6542465556953,"CHH","7:7920899:7922900","CGI_shore"]
[7,7946067,7946213,147,55,0.0714622961668156,0.0172794860261678,0.0541828101406477,248.301016249755,"CHH","7:7944886:7946886","CGI_shore"]
[7,8075069,8075238,170,37,0.190711111974547,0.0885322421543438,0.102178869820204,171.594598224913,"CHH","7:8073373:8075373","CGI_shore"]
[7,8208757,8208893,137,52,0.107490753892984,0.037696655981631,0.0697940979113525,195.607979142146,"CHH","7:8207618:8224085","CGI"]
[7,8272449,8272618,170,39,0.227386740846125,0.0710308012737398,0.156355939572385,201.538937621537,"CHH","7:8271974:8272587","CGI"]
[7,8530835,8530981,147,29,0.1442594815777,0.0149073089570329,0.129352172620667,179.089915769126,"CHH","7:8529509:8531509","CGI_shore"]
[7,9020080,9020223,144,29,0.153391298386563,0.0251759077117991,0.128215390674764,171.027252836467,"CHH","7:9019237:9021238","CGI_shore"]
[7,9084832,9085035,204,48,0.222145506755924,0.0310323268312566,0.191113179924667,283.731310903813,"CHH","7:9085022:9085335","CGI"]
[7,9464948,9465053,106,41,0.101160476341418,0.0347403080692791,0.0664201682721385,217.387609361689,"CHH","Os07g0265600","intron","ARGONAUTE 16","Similar to Protein argonaute 16 && sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica OX=39947 GN=AGO16 PE=2 SV=2 && PF02171:Piwi domain"]
[7,9521067,9521229,163,37,0.230121829947952,0.0543869405671536,0.175734889380798,211.942259919032,"CHH","7:9520334:9522335","CGI_shore"]
[7,9531821,9532080,260,65,0.138456417566006,0.0461029085423914,0.0923535090236142,330.884921593825,"CHH","7:9531286:9533286","CGI_shore"]
[7,9545214,9545300,87,38,0.139007899368836,0.059730238981066,0.0792776603877697,204.712810359757,"CHH","7:9543246:9554934","CGI"]
[7,9575038,9575145,108,34,0.282437207115598,0.0557453984691815,0.226691808646417,135.669845746584,"CHH","7:9574537:9576538","CGI_shore"]
[7,9828551,9828790,240,21,0.490914962883467,0.316139780110785,0.174775182772682,86.873955113329,"CG","Target=RETROFIT_I-int:1-2340;Class=LTR/Copia","repeat"]
[7,9857343,9857466,124,13,0.408852410732947,0.0407133565643983,0.368139054168549,82.5730223964011,"CHG","7:9856311:9858311","CGI_shore"]
[7,10040879,10040936,58,28,0.220461668845958,0.127630277369182,0.0928313914767762,139.92232296994,"CHH","7:10039153:10041154","CGI_shore"]
[7,10151490,10151556,67,23,0.120417688477799,0.037813773501373,0.0826039149764259,94.9999465220394,"CHH","7:10151451:10153452","CGI_shore"]
[7,10210724,10210799,76,28,0.153650532254689,0.0641912257426229,0.0894593065120664,138.917375163017,"CHH","Os07g0274100","promoter","Os07g0274100","Metallophosphoesterase domain containing protein && sp|Q0WVZ1|Y3330_ARATH Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana OX=3702 GN=At3g03305 PE=2 SV=1 && -"]
[7,10228057,10228184,128,37,0.145939533883265,0.0508608732655816,0.0950786606176831,171.993459992362,"CHH","7:10226105:10228105","CGI_shore"]
[7,10691191,10691526,336,98,0.286662916887203,0.143360808660306,0.143302108226897,482.658972282055,"CHH","7:10689768:10691768","CGI_shore"]
[7,10871112,10871169,58,16,0.674034794363855,0.355985000460361,0.318049793903493,73.9849714938879,"CHG","7:10870237:10872238","CGI_shore"]
[7,10919534,10919609,76,5,0.705770803806701,0.2452500424181,0.460520761388601,35.3918869012696,"CHG","7:10917706:10919706","CGI_shore"]
[7,11118656,11118902,247,72,0.212273255284845,0.0788260871579779,0.133447168126867,420.7040904356,"CHH","7:11116235:11123268","CGI"]
[7,11295135,11295289,155,56,0.122990246810106,0.0161692844648991,0.106820962345207,283.052666421713,"CHH","7:11293313:11295314","CGI_shore"]
[7,11354722,11354889,168,58,0.199459611022014,0.0751592733717394,0.124300337650275,323.059970122724,"CHH","7:11354024:11359661","CGI"]
[7,11419930,11420081,152,47,0.214730775391122,0.132133241459379,0.0825975339317433,228.834677704629,"CHH","7:11411193:11421137","CGI"]
[7,11431035,11431110,76,27,0.135809727698134,0.0464784658625903,0.0893312618355437,150.608582183906,"CHH","7:11430661:11432661","CGI_shore"]
[7,11451220,11451447,228,73,0.0927494179999923,0.0259256394462163,0.066823778553776,385.489765050506,"CHH","Os07g0294300","exon","Os07g0294300","Conserved hypothetical protein && - && -"]
[7,11471736,11471989,254,85,0.145455369780804,0.0554379646410717,0.0900174051397325,422.190965160858,"CHH","7:11468076:11475354","CGI"]
[7,11479311,11479374,64,22,0.353959495906353,0.221088336503946,0.132871159402407,102.253183921123,"CHH","7:11479018:11480235","CGI"]
[7,11573096,11573262,167,64,0.254578235210823,0.0813785785018349,0.173199656708988,480.724876878449,"CHH","7:11571277:11573277","CGI_shore"]
[7,11598211,11598458,248,76,0.341673533838253,0.160308172456783,0.18136536138147,433.839405919533,"CHH","Os07g0296200","promoter","Os07g0296200","Nucleotide-binding, alpha-beta plait domain containing protein && sp|Q9AST1|TAF15_ARATH Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)|PF00641:Zn-finger in Ran binding protein and others"]
[7,11758725,11759016,292,62,0.312460527924274,0.0566776539399357,0.255782873984339,524.851453306781,"CHH","7:11758844:11760845","CGI_shore"]
[7,11975418,11975559,142,12,0.694460960284689,0.216981126181575,0.477479834103114,72.6009463737789,"CHG","7:11975283:11977284","CGI_shore"]
[7,11982539,11982719,181,46,0.191302193378296,0.0453396921983243,0.145962501179972,252.330580814054,"CHH","7:11982486:11983295","CGI"]
[7,12563392,12563496,105,38,0.146090542296207,0.0621787139007533,0.0839118283954534,183.004199082499,"CHH","7:12563323:12565324","CGI_shore"]
[7,12564968,12565111,144,54,0.159769603417964,0.0864602290925243,0.0733093743254395,245.869812939483,"CHH","7:12563236:12565236","CGI_shore"]
[7,12624564,12624625,62,19,0.13612638154363,0.0148549094725093,0.121271472071121,109.614472281831,"CHH","7:12623478:12625479","CGI_shore"]
[7,12683445,12683665,221,41,0.271499208216808,0.128830320660493,0.142668887556315,217.415676728949,"CHH","7:12681971:12683972","CGI_shore"]
[7,12731303,12731517,215,58,0.329692475903806,0.110592077302377,0.21910039860143,402.337544180294,"CHH","7:12730755:12732756","CGI_shore"]
[7,12738352,12738427,76,26,0.176707503641007,0.0864445494001887,0.0902629542408187,126.740708964211,"CHH","7:12738161:12740162","CGI_shore"]
[7,12820355,12820497,143,49,0.114875413405891,0.0186492614851912,0.0962261519206997,332.065269274372,"CHH","7:12819416:12821417","CGI_shore"]
[7,12879691,12879973,283,79,0.14973413381396,0.0298199638026399,0.11991417001132,404.344055687438,"CHH","7:12878623:12880624","CGI_shore"]
[7,13087057,13087126,70,31,0.0841692857611301,0.0471251727272683,0.0370441130338618,145.159691799282,"CHH","7:13086921:13088922","CGI_shore"]
[7,13114967,13115058,92,19,0.897884543365329,0.79530446835907,0.102580075006259,99.1914279627006,"CG","7:13113406:13115407","CGI_shore"]
[7,13114967,13115058,92,19,0.897884543365329,0.79530446835907,0.102580075006259,99.1914279627006,"CG","7:13114793:13116655","CGI"]
[7,13209341,13209436,96,41,0.153817357031736,0.0611151362951088,0.0927022207366268,210.069894201931,"CHH","7:13208665:13210160","CGI"]
[7,13351486,13351542,57,10,0.762654207096764,0.57768719266445,0.184967014432314,47.0164438701161,"CG","7:13351316:13351892","CGI"]
[7,13366660,13366858,199,66,0.121506129141527,0.0342056960328194,0.0873004331087074,355.441544618324,"CHH","Os07g0418700","exon","REPETITIVE PROLINE-RICH PROTEIN 2.1","Proline-rich glycoprotein, ABA-dependent inhibition of root growt && - && -"]
[7,13480598,13480903,306,111,0.134637784136473,0.059905084692485,0.0747326994439881,559.949455613204,"CHH","7:13480681:13482682","CGI_shore"]
[7,13572914,13573062,149,48,0.502918633686371,0.365702694350194,0.137215939336177,235.391858970755,"CHH","7:13572720:13574721","CGI_shore"]
[7,13657018,13657084,67,30,0.169763583809985,0.0612860520099324,0.108477531800053,145.137916857946,"CHH","7:13655060:13661384","CGI"]
[7,13809059,13809123,65,6,0.71386674630429,0.334664521575291,0.379202224728999,29.1891242347989,"CG","7:13798948:13835649","CGI"]
[7,13849608,13849963,356,137,0.283840919756147,0.131745207500804,0.152095712255343,721.467313446133,"CHH","Target=(GCCTG)n:4-63;Class=Simple_repeat","repeat"]
[7,14126929,14126988,60,18,0.112765001514824,0.0533621799087362,0.0594028216060883,106.461487240459,"CHH","7:14126295:14128295","CGI_shore"]
[7,14462389,14462458,70,27,0.113727795636603,0.0328272074037909,0.0809005882328117,118.950516921369,"CHH","7:14460963:14462964","CGI_shore"]
[7,14531513,14531759,247,68,0.307116133872235,0.169081036525652,0.138035097346583,368.247549431616,"CHH","7:14531055:14533055","CGI_shore"]
[7,14595681,14595858,178,58,0.25271906550416,0.115404543435091,0.137314522069069,267.832617308263,"CHH","7:14594202:14596203","CGI_shore"]
[7,14597721,14597778,58,19,0.3925424897658,0.187441004450447,0.205101485315353,112.522216581362,"CHH","7:14597774:14599775","CGI_shore"]
[7,14972180,14972477,298,74,0.128996812108526,0.0235723796363014,0.105424432472224,403.832981925724,"CHH","7:14971869:14973869","CGI_shore"]
[7,14972180,14972477,298,74,0.128996812108526,0.0235723796363014,0.105424432472224,403.832981925724,"CHH","7:14972437:14974437","CGI_shore"]
[7,15324747,15325161,415,138,0.181448648002982,0.0926533183255666,0.0887953296774156,697.231398093055,"CHH","7:15323306:15325306","CGI_shore"]
[7,15420394,15420483,90,19,0.242425458321076,0.0867485114959295,0.155676946825146,105.556416963296,"CHH","7:15418743:15420743","CGI_shore"]
[7,15445271,15445480,210,71,0.392501318569376,0.246955932843817,0.14554538572556,370.444834561213,"CHH","7:15444022:15446022","CGI_shore"]
[7,15924547,15924619,73,23,0.147688319706624,0.0203758361669528,0.127312483539671,114.027251383307,"CHH","7:15922877:15924877","CGI_shore"]
[7,15972281,15972423,143,35,0.155935178079708,0.0212929135349218,0.134642264544787,181.809497684936,"CHH","7:15970651:15972652","CGI_shore"]
[7,16135285,16135446,162,54,0.196166303923747,0.0282034527647037,0.167962851159043,336.285423479335,"CHH","7:16132972:16135544","CGI"]
[7,16711364,16711581,218,88,0.139223517256726,0.0436693610818103,0.0955541561749153,430.214060150809,"CHH","7:16710050:16712051","CGI_shore"]
[7,16777177,16777283,107,34,0.191055664806847,0.0718580397516072,0.119197625055239,134.023150378743,"CHH","7:16776789:16778789","CGI_shore"]
[7,16921969,16922038,70,13,0.192506251877267,0.00836181524571136,0.184144436631556,78.3492847693582,"CHH","7:16920271:16922271","CGI_shore"]
[7,17060723,17060901,179,29,0.563206923476147,0.0826927195139721,0.480514203962174,222.422556239114,"CHH","7:17060493:17062494","CGI_shore"]
[7,17332784,17332967,184,16,0.578669429501792,0.335476707455532,0.24319272204626,77.9189217127533,"CHG","7:17332962:17334962","CGI_shore"]
[7,17812456,17812518,63,14,0.138578020521912,0.0477833132667417,0.0907947072551698,69.775266177425,"CHH","7:17811814:17813814","CGI_shore"]
[7,17847990,17848143,154,30,0.277659477058562,0.125357015239739,0.152302461818823,142.820220011168,"CHH","Os07g0485500","intron","USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 11","Protein of unknown function DUF6, transmembrane domain containing protein && sp|Q9FGL0|WTR44_ARATH WAT1-related protein At5g47470 OS=Arabidopsis thaliana OX=3702 GN=At5g47470 PE=3 SV=1 && PF00892:EamA-like transporter family"]
[7,17957108,17957223,116,27,0.154459688600928,0.0558749061716193,0.0985847824293085,122.087873355121,"CHH","7:17932823:17976259","CGI"]
[7,18355510,18355679,170,39,0.288180009192291,0.107443249277781,0.18073675991451,144.323542785409,"CG","Os07g0492250","utr5","Os07g0492250","Hypothetical protein && - && -"]
[7,18356243,18356319,77,17,0.121839811954976,0.00991280845899221,0.111927003495984,88.3920208957498,"CHH","7:18355930:18357930","CGI_shore"]
[7,18553935,18554056,122,36,0.160742335299677,0.0383368794709593,0.122405455828718,165.845319318401,"CHH","7:18553045:18555045","CGI_shore"]
[7,18692974,18693131,158,37,0.121087010859208,0.0407806027385299,0.0803064081206784,186.406849237386,"CHH","Os07g0498400","promoter","Os07g0498400","Leucine-rich repeat, typical subtype domain containing protein && sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana OX=3702 GN=GSO1 PE=1 SV=1 && PF08263:Leucine rich repeat N-terminal domain|PF13855:Leucine rich repeat|PF00069:Protein kinase domain"]
[7,18760040,18760119,80,29,0.116436177231673,0.0407758476325672,0.0756603295991059,148.416741137574,"CHH","Os07g0499300","promoter","Os07g0499300","Similar to predicted protein && sp|Q9LZA6|SDP1_ARATH Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana OX=3702 GN=SDP1 PE=1 SV=1 && -"]
[7,18763780,18763935,156,45,0.0870200608636466,0.03163349386629,0.0553865669973565,206.52587737485,"CHH","Os07g0499500","promoter","class III peroxidase 102","Similar to Peroxidase 7 precursor (EC 1.11.1.7) (Atperox P7) (ATP30) && sp|Q9SY33|PER7_ARATH Peroxidase 7 OS=Arabidopsis thaliana OX=3702 GN=PER7 PE=2 SV=1 && PF00141:Peroxidase"]
[7,18907934,18908282,349,133,0.366581726961972,0.232040934332548,0.134540792629424,649.127349030771,"CHH","7:18906836:18908837","CGI_shore"]
[7,19048742,19048934,193,57,0.334101363374159,0.202474255232786,0.131627108141373,283.983565274457,"CHH","7:19047883:19049884","CGI_shore"]
[7,19482329,19482427,99,19,0.218238161220587,0.105191797575105,0.113046363645483,90.395134279673,"CHH","Target=(TAGA)n:4-49;Class=Simple_repeat","repeat"]
[7,19531338,19531424,87,24,0.0602660181171462,0.0178302528882089,0.0424357652289373,116.994395477669,"CHH","Os07g0511201","promoter","Os07g0511201","Hypothetical protein && - && -"]
[7,19633217,19633324,108,40,0.252577320837018,0.142671138227323,0.109906182609695,165.008877351368,"CHH","7:19632227:19634227","CGI_shore"]
[7,19779767,19779854,88,27,0.171342007549355,0.0685328870943487,0.102809120455006,129.6157442637,"CHH","7:19779139:19782956","CGI"]
[7,19954185,19954350,166,22,0.324771944551698,0.0207701108561411,0.304001833695557,174.904599131873,"CHH","7:19953088:19955089","CGI_shore"]
[7,20173544,20173618,75,25,0.477031023506237,0.301866546045337,0.1751644774609,138.721590441528,"CHH","7:20171815:20173815","CGI_shore"]
[7,20447491,20447645,155,45,0.213388758126547,0.0701861436568699,0.143202614469677,205.489090947841,"CHH","7:20445942:20447943","CGI_shore"]
[7,20456370,20456454,85,35,0.0905353982236162,0.0304804943823373,0.0600549038412789,121.67268490164,"CG","7:20455502:20457502","CGI_shore"]
[7,20737161,20737235,75,27,0.0871430286976187,0.0317574350602787,0.0553855936373399,124.362997659477,"CHH","Os07g0529800","promoter","translation initiation factor eIF1, protein translation factor SUI1","Protein translation factor SUI1 homolog (GOS2 protein) && sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1 && PF01253:Translation initiation factor SUI1"]
[7,20737161,20737235,75,27,0.0871430286976187,0.0317574350602787,0.0553855936373399,124.362997659477,"CHH","7:20735268:20737268","CGI_shore"]
[7,20934583,20934733,151,40,0.235705978439197,0.12236535179965,0.113340626639548,186.042352011969,"CHH","7:20934108:20936108","CGI_shore"]
[7,21095850,21095936,87,27,0.289395723176317,0.138520916285824,0.150874806890493,134.996629986371,"CHH","7:21094063:21096064","CGI_shore"]
[7,21098260,21098372,113,43,0.30803881318335,0.17082524903049,0.13721356415286,228.359586410589,"CHH","7:21097324:21099324","CGI_shore"]
[7,21174846,21174908,63,12,0.130539279693352,0.00324281897593968,0.127296460717413,88.6243551875475,"CHH","7:21173318:21175318","CGI_shore"]
[7,21291867,21291991,125,49,0.212629282066685,0.107000469074749,0.105628812991935,235.834503755519,"CHH","7:21291844:21294247","CGI"]
[7,21291867,21291991,125,49,0.212629282066685,0.107000469074749,0.105628812991935,235.834503755519,"CHH","Os07g0539950","TSS","Os07g0539950","Conserved hypothetical protein && - && -"]
[7,21372407,21372596,190,56,0.117647134648575,0.0309950576214105,0.0866520770271641,339.417369772135,"CHH","Os07g0541200","intron","Os07g0541200","Similar to receptor-like serine-threonine protein kinase && sp|Q0D5R3|CRK6_ORYSJ Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 && PF01657:Salt stress response/antifungal|PF00069:Protein kinase domain"]
[7,21510978,21511077,100,45,0.241393184783384,0.130271311076027,0.111121873707357,243.844146863775,"CHH","7:21510739:21512739","CGI_shore"]
[7,21510978,21511077,100,45,0.241393184783384,0.130271311076027,0.111121873707357,243.844146863775,"CHH","Os07g0543500","promoter","Os07g0543500","Armadillo-like helical domain containing protein && - && -"]
[7,21607831,21608105,275,69,0.290049665610528,0.175995072768559,0.114054592841969,302.669641334337,"CHH","7:21606364:21608364","CGI_shore"]
[7,21608979,21609128,150,35,0.329522266348939,0.204848785002219,0.124673481346721,156.874901805829,"CHH","7:21608091:21610092","CGI_shore"]
[7,22015016,22015110,95,21,0.267499949361817,0.118280805358483,0.149219144003334,99.0657964120821,"CHH","Os07g0553450","promoter","Os07g0553450","Hypothetical protein && sp|Q6ZF85|CSLF3_ORYSJ Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLF3 PE=3 SV=1 && -"]
[7,22075281,22075390,110,41,0.444865288722107,0.227879138957926,0.216986149764181,269.094842940339,"CHH","7:22075249:22077250","CGI_shore"]
[7,22189319,22189417,99,23,0.709696696229324,0.473055010949402,0.236641685279923,136.888751387799,"CHH","Os07g0556300","promoter","Os07g0556300","Octicosapeptide/Phox/Bem1p domain containing protein && - && PF00564:PB1 domain"]
[7,22230198,22230374,177,40,0.235059289349791,0.112193351691196,0.122865937658596,213.34748386147,"CHH","7:22228631:22230631","CGI_shore"]
[7,22328209,22328342,134,43,0.0565979431283741,0.0135778762232606,0.0430200669051135,203.077648454391,"CHH","7:22327505:22329505","CGI_shore"]
[7,22580002,22580070,69,29,0.24197073190108,0.142028043836814,0.0999426880642655,138.537607099763,"CHH","7:22580062:22580894","CGI"]
[7,22809759,22809941,183,38,0.228423687452771,0.062509133876183,0.165914553576588,205.87103125509,"CHH","7:22805670:22815899","CGI"]
[7,22895142,22895256,115,37,0.102917153897166,0.0358660040938953,0.0670511498032708,172.608555238256,"CHH","7:22894108:22896109","CGI_shore"]
[7,22920286,22920375,90,26,0.699837202178965,0.567501397739264,0.132335804439701,116.966062165785,"CHH","Os07g0569500","promoter","Os07g0569500","Nicotinamide N-methyltransferase, putative domain containing protein && sp|A7IQW5|MT21_CAEEL Protein-lysine methyltransferase C42C1.13 OS=Caenorhabditis elegans OX=6239 GN=C42C1.13 PE=3 SV=1 && PF10294:Lysine methyltransferase"]
[7,23230993,23231118,126,31,0.156696220826088,0.0403267685825459,0.116369452243542,175.623538281022,"CHH","7:23230967:23232967","CGI_shore"]
[7,23457765,23457907,143,54,0.100113825013108,0.0135505319990753,0.0865632930140326,273.946376592821,"CHH","7:23429523:23462638","CGI"]
[7,23813199,23813359,161,35,0.280021154887697,0.0988815104018622,0.181139644485835,207.160620233372,"CHH","7:23812384:23814384","CGI_shore"]
[7,23922019,23922568,550,191,0.249377185066675,0.117868670362636,0.131508514704039,1090.26767477511,"CHH","7:23922117:23923010","CGI"]
[7,23961937,23962055,119,37,0.174831607394087,0.0176142689448789,0.157217338449208,186.592072254072,"CHH","7:23962022:23962317","CGI"]
[7,24097534,24097634,101,14,0.172344583087063,7.63037824505683E-3,0.164714204842006,84.2796407248331,"CHH","Os07g0591300","intron","Os_F0764","Hypothetical conserved gene && - && -"]
[7,24474173,24474299,127,37,0.248700089553002,0.149551036940678,0.0991490526123244,169.709708732709,"CHH","7:24473511:24475512","CGI_shore"]
[7,24516982,24517154,173,45,0.570864246409885,0.429526722004884,0.141337524405001,213.088496918952,"CHH","Os07g0601000","intron","Os07g0601000","Similar to NADPH HC toxin reductase (Fragment) && sp|Q5XLY0|ANR_GINBI Putative anthocyanidin reductase OS=Ginkgo biloba OX=3311 PE=2 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[7,24577625,24577834,210,60,0.205562985351456,0.0701288685613716,0.135434116790085,352.395371824286,"CHH","7:24575409:24578044","CGI"]
[7,24904977,24905037,61,18,0.130927681735844,0.0353627606772854,0.0955649210585587,82.6216039890811,"CHH","Os07g0606400","intron","Os07g0606400","Sulfotransferase domain domain containing protein && sp|Q8GZ53|SOT14_ARATH Cytosolic sulfotransferase 14 OS=Arabidopsis thaliana OX=3702 GN=SOT14 PE=2 SV=1 && PF00685:Sulfotransferase domain"]
[7,25146920,25146988,69,14,0.110886658498025,0.0163697330052123,0.0945169254928125,78.1711018848107,"CHH","7:25145246:25147246","CGI_shore"]
[7,25304073,25304286,214,45,0.205897494169311,0.0904155158187024,0.115481978350609,222.68335103584,"CHH","Os07g0614250","intron","Os07g0614250","Hypothetical protein && sp|Q9Z1L5|CA2D3_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Mus musculus OX=10090 GN=Cacna2d3 PE=1 SV=1 && -"]
[7,25458173,25458266,94,37,0.0725027697040359,0.011296697114929,0.0612060725891069,181.219981427106,"CHH","7:25452414:25463377","CGI"]
[7,26436544,26436639,96,31,0.10695911104495,0.0425891706824983,0.0643699403624516,185.172803213949,"CHH","7:26436567:26438567","CGI_shore"]
[7,26707121,26707229,109,26,0.113982398404105,0.0546835685959453,0.0592988298081598,119.437718939396,"CHH","7:26706223:26708224","CGI_shore"]
[7,26788450,26788596,147,49,0.321470617339318,0.140397862491302,0.181072754848016,436.55726472606,"CHH","7:26779968:26797604","CGI"]
[7,26925682,26925763,82,33,0.165846702676992,0.0170764378635886,0.148770264813403,149.166707336848,"CHH","7:26925654:26927654","CGI_shore"]
[7,27024654,27024728,75,18,0.282888393998708,0.160894105000258,0.12199428899845,78.3605904253886,"CHH","7:27023676:27025677","CGI_shore"]
[7,27125475,27125587,113,43,0.292075665267553,0.14295259248823,0.149123072779323,251.70222224106,"CHH","7:27125221:27125669","CGI"]
[7,27169322,27169515,194,53,0.218480984487137,0.104465518683321,0.114015465803816,260.405416821453,"CHH","7:27168237:27170238","CGI_shore"]
[7,27179627,27179708,82,21,0.0962047719258493,0.034590686056386,0.0616140858694634,110.631886617013,"CHH","7:27179126:27181127","CGI_shore"]
[7,27479603,27479686,84,14,0.266657512690542,0.104346979865941,0.162310532824601,66.5356867873577,"CG","Os07g0654100","intron","Os07g0654100","Hypothetical protein && - && -"]
[7,27500614,27500706,93,17,0.112693302862873,0.0197251777699412,0.092968125092932,99.8728548423766,"CHH","7:27499845:27501845","CGI_shore"]
[7,27591222,27591281,60,17,0.288604311473374,0.184200587883805,0.10440372358957,69.236120464799,"CHH","7:27584977:27614567","CGI"]
[7,27745471,27745541,71,18,0.363182677118383,0.144565038461084,0.218617638657298,92.6012709392432,"CHH","Os07g0658550","promoter","Os07g0658550","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[7,27901230,27901403,174,56,0.10370382258206,0.0200550212566795,0.0836488013253801,328.144395869403,"CHH","Os07g0661450","exon","Os07g0661450","Similar to predicted protein && sp|F4J3H7|ZRK7_ARATH Serine/threonine-protein kinase ZRK7 OS=Arabidopsis thaliana OX=3702 GN=ZRK7 PE=2 SV=1 && -"]
[7,27971899,27972008,110,24,0.511417434778446,0.366498295529356,0.144919139249089,110.935437950277,"CHH","Os07g0663000","promoter","Os07g0663000","Hypothetical protein && - && -"]
[7,27998023,27998094,72,36,0.23828018887338,0.0862416230385373,0.152038565834843,187.921357956406,"CHH","Os07g0663650","promoter","Os07g0663650","Hypothetical protein && sp|Q7FAE1|MOMAS_ORYSJ Momilactone A synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0179200 PE=2 SV=1 && -"]
[7,28199203,28199271,69,28,0.122109959568617,0.0207290184677611,0.101380941100856,137.562088883958,"CHH","7:28197668:28199669","CGI_shore"]
[7,28246313,28246391,79,22,0.274768075227249,0.0511299957769058,0.223638079450343,106.687349674661,"CHH","7:28246095:28248096","CGI_shore"]
[7,28361859,28361951,93,25,0.0686630749785628,0.00455786322756993,0.0641052117509929,121.483226400154,"CHH","7:28360025:28362025","CGI_shore"]
[7,28705264,28705975,712,208,0.246595829602114,0.0943968875831075,0.152198942019007,1150.08743909773,"CHH","7:28705184:28707185","CGI_shore"]
[7,28833850,28833925,76,24,0.0378487917559847,0.00244430059984667,0.035404491156138,114.757254200596,"CHH","Os07g0680400","promoter","WRKY GENE 47","WRKY transcription factor, Drought toleranc && sp|Q93WU8|WRK54_ARATH Probable WRKY transcription factor 54 OS=Arabidopsis thaliana OX=3702 GN=WRKY54 PE=1 SV=2 && PF03106:WRKY DNA -binding domain"]
[7,29227847,29228006,160,41,0.0596491380732199,9.51756322773324E-3,0.0501315748454867,192.086975958807,"CHH","Os07g0688000","utr3","nitrate transporter 3.2","Metallophosphoesterase domain containing protein && sp|Q8H5F8|ADPRM_ORYSJ Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0688000 PE=2 SV=1 && PF00149:Calcineurin-like phosphoesterase"]
[7,29551694,29551752,59,22,0.10131162520066,0.0132008956666364,0.088110729534024,124.029014380787,"CHH","7:29549955:29551955","CGI_shore"]
[7,29564481,29564775,295,70,0.164282958014441,0.0507492122429502,0.113533745771491,433.520159737202,"CHH","7:29559831:29569055","CGI"]
[7,29696953,29697175,223,96,0.299411101910364,0.130651702224205,0.168759399686159,685.001414882721,"CHH","Target=(TTAGGG)n:1-332;Class=Simple_repeat","repeat"]
[8,316303,316513,211,60,0.130141672633363,0.0419550606635171,0.088186611969846,294.387220594792,"CHH","8:315764:317764","CGI_shore"]
[8,339525,339588,64,25,0.0546547319274567,0.00851678727432991,0.0461379446531268,115.403551058768,"CHH","Os08g0106900","promoter","Os08g0106900","Similar to retrotransposon protein && - && PF13359:DDE superfamily endonuclease"]
[8,753543,753660,118,32,0.104788369199739,0.0369571317851592,0.0678312374145799,198.723997501582,"CHH","ENSRNA049476273","exon","U2","U2 spliceosomal RNA && - && -"]
[8,1153058,1153237,180,50,0.169021684828912,0.0787673277860951,0.0902543570428173,260.660006236824,"CHH","8:1153000:1155000","CGI_shore"]
[8,1212468,1212563,96,20,0.177191235447103,0.0829764783881505,0.0942147570589525,96.0140778992329,"CHH","8:1211808:1213808","CGI_shore"]
[8,1274258,1274425,168,54,0.228256018289736,0.0861687344266505,0.142087283863086,311.154016059488,"CHH","8:1273373:1275373","CGI_shore"]
[8,1287047,1287130,84,31,0.168821549361506,0.0761732372173963,0.0926483121441094,159.293571812885,"CHH","Os08g0123300","promoter","Os08g0123300","Conserved hypothetical protein && - && -"]
[8,1317577,1317630,54,20,0.247068173957546,0.155715470148891,0.0913527038086548,82.1459302718244,"CHH","Os08g0124250","promoter","Os08g0124250","EF-hand-like domain domain containing protein && sp|P04352|CALM_CHLRE Calmodulin OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=2 && -"]
[8,1375091,1375181,91,13,0.506381611123178,0.284159064959463,0.222222546163715,47.4618938649911,"CHG","8:1375130:1377130","CGI_shore"]
[8,1615732,1615793,62,20,0.133558179834113,0.0334715192877022,0.100086660546411,109.747590352175,"CHH","Os08g0128300","promoter","Os08g0128300","Similar to Actin-like protein 3 (Actin-related protein 3) && sp|A2X6S3|ARP3_ORYSI Actin-related protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=ARP3 PE=3 SV=2 && -"]
[8,1760060,1760139,80,23,0.295619004951636,0.0569162624891631,0.238702742462473,111.494925257079,"CHH","Os08g0131300","promoter","Os08g0131300","Phospholipid/glycerol acyltransferase domain containing protein && sp|K7PEY4|RAM2_MEDTR Glycerol-3-phosphate acyltransferase RAM2 OS=Medicago truncatula OX=3880 GN=RAM2 PE=2 SV=1 && PF12710:haloacid dehalogenase-like hydrolase"]
[8,2389942,2390113,172,57,0.1531449564793,0.0486575847549731,0.104487371724326,220.880022064569,"CG","8:2388096:2390420","CGI"]
[8,2497501,2497676,176,44,0.298475169581431,0.151561151263442,0.146914018317988,234.809038856284,"CHH","8:2495700:2497701","CGI_shore"]
[8,2519378,2519458,81,18,0.134059158832183,0.0189317891564076,0.115127369675775,82.4706860407132,"CHH","8:2517461:2519462","CGI_shore"]
[8,2561679,2561806,128,54,0.249945265524427,0.148331684547809,0.101613580976618,247.481813320475,"CHH","8:2561667:2563667","CGI_shore"]
[8,2577316,2577380,65,19,0.113383551539526,0.0175061348459795,0.0958774166935464,98.0611678355427,"CHH","8:2577353:2578008","CGI"]
[8,2608665,2608732,68,16,0.106324314659162,0.0235367781615672,0.0827875364975948,74.9180613523897,"CHH","8:2607012:2609012","CGI_shore"]
[8,2693418,2693580,163,52,0.05849086591312,0.00346553192704158,0.0550253339860784,282.198753735215,"CHH","8:2692049:2694050","CGI_shore"]
[8,2838447,2838509,63,10,0.406973773546604,0.232387636561315,0.174586136985289,40.0563325409652,"CHG","8:2837296:2839297","CGI_shore"]
[8,3069227,3069466,240,75,0.347332172513883,0.188653046478956,0.158679126034927,425.541640622171,"CHH","8:3067796:3069796","CGI_shore"]
[8,3135033,3135234,202,50,0.181807772875179,0.0870919036216136,0.0947158692535651,239.283011593187,"CHH","8:3134357:3136357","CGI_shore"]
[8,3291044,3291106,63,20,0.30221404470831,0.15303808150055,0.14917596320776,105.07962855953,"CHH","Os08g0156700","promoter","Os08g0156700","Similar to VAP27 && sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana OX=3702 GN=PVA12 PE=1 SV=1 && PF00635:MSP (Major sperm protein) domain"]
[8,3291186,3291390,205,51,0.284513677455073,0.0813915252695107,0.203122152185562,287.036825694849,"CHH","Os08g0156800","promoter","Os08g0156800","Similar to 60S ribosomal protein L34 && sp|P40590|RL34_PEA 60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1 && PF01199:Ribosomal protein L34e"]
[8,3415904,3416007,104,33,0.0631282308605463,0.0158889714152214,0.0472392594453249,142.270312271653,"CHH","Os08g0158400","exon","Os08g0158400","Similar to Berberine bridge enzyme-like protein && sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica OX=3467 GN=BBE1 PE=1 SV=1 && PF08031:Berberine and berberine like|PF01565:FAD binding domain"]
[8,3657465,3657717,253,68,0.244636066437634,0.108542749143277,0.136093317294357,399.450630945074,"CHH","Os08g0162066","exon","Os08g0162066","Conserved hypothetical protein && - && -"]
[8,3789903,3789975,73,9,0.514266035849908,0.297599966977224,0.216666068872684,52.3589720377177,"CHG","8:3785721:3790466","CGI"]
[8,3818988,3819237,250,65,0.127724842876596,0.0604525254393458,0.0672723174372501,310.105485950987,"CHH","Os08g0165300","exon","Os08g0165300","Conserved hypothetical protein && - && -"]
[8,3881823,3881899,77,25,0.0985913637773536,0.0269285493202979,0.0716628144570557,116.647244090269,"CHH","8:3881244:3883244","CGI_shore"]
[8,3978947,3979029,83,31,0.0355571102982791,0.00760246160898872,0.0279546486892904,109.830670257253,"CHH","8:3977791:3979791","CGI_shore"]
[8,4191590,4191734,145,32,0.349467948700136,0.185659675749439,0.163808272950697,194.073044763216,"CHH","Os08g0171600","TES","Os08g0171600","RNA polymerase Rpb2, domain 6 containing protein && sp|Q9LK40|NRPD2_ARATH DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPD2 PE=1 SV=1 && PF00562:RNA polymerase Rpb2, domain 6|PF04560:RNA polymerase Rpb2, domain 7"]
[8,4288162,4288299,138,40,0.126128016254029,0.049723173080664,0.0764048431733647,161.25805588587,"CHH","8:4286770:4288771","CGI_shore"]
[8,4402092,4402394,303,126,0.140436697348326,0.0331272717299483,0.107309425618377,764.843945781099,"CHH","8:4401048:4403049","CGI_shore"]
[8,4460958,4461081,124,40,0.104230770482854,0.0160359146155964,0.088194855867258,200.028185006279,"CHH","8:4460107:4462107","CGI_shore"]
[8,4572589,4572776,188,78,0.053060822632937,0.0122680110954683,0.0407928115374687,414.30654513653,"CHH","Os08g0178100","intron","Os08g0178100","Pep3/Vps18/deep orange domain containing protein && sp|F4IDS7|VPS18_ARATH Vacuolar sorting protein 18 OS=Arabidopsis thaliana OX=3702 GN=VPS18 PE=1 SV=1 && PF05131:Pep3/Vps18/deep orange family|PF00637:Region in Clathrin and VPS"]
[8,4851890,4852125,236,47,0.356372654033917,0.211039453185254,0.145333200848663,199.355825674296,"CHH","8:4851132:4853132","CGI_shore"]
[8,4898443,4898557,115,37,0.0374439863229684,0.00283859742300438,0.0346053888999641,159.344551513681,"CHH","Os08g0183900","exon","Os08g0183900","Similar to dihydroflavonol-4-reductase && sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana OX=3702 GN=CCR1 PE=1 SV=1 && -"]
[8,5181912,5182079,168,58,0.218575621931,0.0763191496016785,0.142256472329322,297.005072303502,"CHH","8:5181742:5183743","CGI_shore"]
[8,5469638,5469831,194,59,0.43163668429743,0.262263121032872,0.169373563264558,303.522500646266,"CHH","Os08g0193700","promoter","Os08g0193700","Similar to NBS-LRR disease resistance protein homologue (Fragment) && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF00931:NB-ARC domain"]
[8,5586244,5586335,92,29,0.347640673699502,0.224385091994499,0.123255581705003,134.848760720134,"CHH","8:5584345:5586345","CGI_shore"]
[8,5851731,5851977,247,70,0.359433111991117,0.106744105284209,0.252689006706909,574.803919952171,"CHH","8:5850536:5852537","CGI_shore"]
[8,5914597,5914880,284,101,0.174153421463823,0.0950862398763308,0.0790671815874924,589.7242376431,"CHH","8:5914506:5916507","CGI_shore"]
[8,6055626,6055696,71,21,0.15426168551993,0.0297082263996458,0.124553459120284,101.647620322602,"CHH","8:6051122:6056512","CGI"]
[8,6055626,6055696,71,21,0.15426168551993,0.0297082263996458,0.124553459120284,101.647620322602,"CHH","Os08g0203800","promoter","F-box protein 428","Cyclin-like F-box domain containing protein && - && PF12937:F-box-like"]
[8,6166600,6166739,140,36,0.293863204227566,0.141987407083488,0.151875797144078,171.287314934969,"CHH","Os08g0205800","promoter","Os08g0205800","Hypothetical conserved gene && - && -"]
[8,6684737,6684802,66,7,0.704254195690737,0.287719392997985,0.416534802692752,36.072149220386,"CHG","8:6677839:6696883","CGI"]
[8,6721257,6721324,68,18,0.184338071933062,0.0920601647231707,0.0922779072098912,81.8898891821117,"CHH","8:6719614:6721614","CGI_shore"]
[8,6863280,6863333,54,20,0.170108438684171,0.0803194809248986,0.0897889577592725,80.9408452757497,"CHH","8:6862200:6864201","CGI_shore"]
[8,7133728,7133951,224,83,0.0903277864873412,0.0355667892293423,0.0547609972579989,368.629676162687,"CHH","8:7133912:7135913","CGI_shore"]
[8,7367575,7367668,94,15,0.16834617455632,0.109262987463266,0.0590831870930539,72.4330833887521,"CG","8:7367351:7368057","CGI"]
[8,7450452,7450618,167,46,0.12693934372956,0.0462077655197335,0.0807315782098264,215.938714656717,"CHH","8:7450409:7452410","CGI_shore"]
[8,7466885,7466966,82,28,0.169453559201657,0.089893504018036,0.0795600551836213,118.811283353992,"CHH","8:7466763:7467020","CGI"]
[8,7511972,7512121,150,42,0.172983588728294,0.073791775603052,0.0991918131252416,202.331593046803,"CHH","8:7511934:7513935","CGI_shore"]
[8,7552221,7552487,267,64,0.226108944442479,0.105591416766116,0.120517527676363,337.74383901018,"CHH","8:7551834:7553834","CGI_shore"]
[8,7603356,7603572,217,54,0.281665904577762,0.141217313494443,0.140448591083319,251.540392495812,"CHH","8:7603400:7605400","CGI_shore"]
[8,7697268,7697473,206,74,0.0970203641782803,0.0183873290521306,0.0786330351261497,407.879281300478,"CHH","8:7695473:7697473","CGI_shore"]
[8,7812395,7812460,66,23,0.140839832037084,0.0759881552702095,0.0648516767668743,93.6856740162151,"CHH","8:7812291:7814292","CGI_shore"]
[8,8079408,8079686,279,53,0.39747108833161,0.121295736411469,0.276175351920141,265.869385290701,"CHH","8:8077671:8079671","CGI_shore"]
[8,8214948,8215127,180,68,0.370296772812391,0.243566274664085,0.126730498148306,352.519627025479,"CHH","8:8214363:8216363","CGI_shore"]
[8,8231664,8231762,99,18,0.26054722954223,0.0968489141466352,0.163698315395595,137.958718697473,"CHH","Os08g0235600","intron","Os08g0235600","Hypothetical conserved gene && sp|P0DO07|PIK2_ORYSJ Disease resistance protein Pik-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-2 PE=3 SV=1 && PF00931:NB-ARC domain|PF18052:Rx N-terminal domain"]
[8,8403956,8404066,111,28,0.125633202727919,0.00429696903246783,0.121336233695452,131.314305699463,"CHH","8:8402552:8404553","CGI_shore"]
[8,8456577,8456836,260,75,0.256689597175374,0.107405773601945,0.149283823573429,474.253432138473,"CHH","8:8456799:8458799","CGI_shore"]
[8,8588277,8588349,73,22,0.39149935436497,0.22776213059521,0.163737223769761,121.459262108172,"CHH","8:8587068:8589069","CGI_shore"]
[8,8673332,8673506,175,21,0.465163407945141,0.23843946424335,0.226723943701791,106.145685096908,"CHH","Os08g0242700","promoter","Os08g0242700","Similar to uridylyltransferase-related && sp|P83643|UP12_ORYSI ACT domain-containing protein DS12, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_027381 PE=1 SV=2 && -"]
[8,8801656,8801735,80,12,0.19318928937953,0.0629596574412224,0.130229631938308,68.9242756792526,"CHH","8:8801470:8801769","CGI"]
[8,9047401,9047602,202,45,0.159600401713893,0.0487933654229977,0.110807036290895,256.622771652842,"CHH","8:9047212:9049212","CGI_shore"]
[8,9122460,9122858,399,110,0.213403225484082,0.0349485844639034,0.178454641020179,734.410466617032,"CHH","8:9122483:9124484","CGI_shore"]
[8,9394042,9394133,92,36,0.116919142004481,0.0519404469105347,0.0649786950939462,157.130764096064,"CHH","8:9392985:9394985","CGI_shore"]
[8,9518946,9519164,219,53,0.142939087171793,0.0397278602568201,0.103211226914973,272.599062274486,"CHH","8:9491610:9525112","CGI"]
[8,9647516,9647602,87,25,0.124539983030729,0.0532787189766111,0.0712612640541175,135.633716458912,"CHH","8:9646234:9647984","CGI"]
[8,9954346,9954402,57,18,0.121295954635188,0.0256030030149494,0.0956929516202381,120.555479438763,"CHH","8:9953980:9955980","CGI_shore"]
[8,10131266,10131573,308,70,0.304258721010167,0.170222601517929,0.134036119492238,315.887432386921,"CHH","Os08g0266200","promoter","Os08g0266200","Similar to T24D18.25 protein && - && -"]
[8,10246537,10246683,147,48,0.135871549982228,0.0304040385705543,0.105467511411674,223.745904632571,"CHH","8:10245833:10247833","CGI_shore"]
[8,10502211,10502310,100,30,0.141484213737934,0.054843953824922,0.0866402599130121,132.507904517869,"CHH","8:10501526:10503526","CGI_shore"]
[8,10627970,10628206,237,69,0.359322724899109,0.17867876714336,0.180643957755749,419.312001374227,"CHH","8:10625994:10627995","CGI_shore"]
[8,10715810,10715892,83,16,0.193197294862062,0.0778833412977141,0.115313953564348,79.8334525760646,"CHH","8:10715183:10717184","CGI_shore"]
[8,10941184,10941375,192,44,0.232992134883634,0.0980658979581029,0.134926236925532,224.623136324862,"CHH","Os08g0280300","intron","YELLOW STRIP-LIKE GENE 17","Hypothetical conserved gene && sp|Q6ZCX1|YSL17_ORYSJ Probable metal-nicotianamine transporter YSL17 OS=Oryza sativa subsp. japonica OX=39947 GN=YSL17 PE=2 SV=1 && PF03169:OPT oligopeptide transporter protein"]
[8,11308939,11309005,67,8,0.412610590736884,0.119910947785115,0.29269964295177,39.1667935654554,"CHG","Os08g0286100","promoter","Os08g0286100","Similar to predicted protein && sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana OX=3702 GN=At3g07010 PE=2 SV=1 && PF00544:Pectate lyase"]
[8,11402789,11402923,135,34,0.381206432107586,0.187100169535964,0.194106262571623,262.548842393899,"CG","Os08g0287800","exon","Os08g0287800","Hypothetical conserved gene && - && -"]
[8,11402789,11402923,135,34,0.381206432107586,0.187100169535964,0.194106262571623,262.548842393899,"CG","Os08g0288000","promoter","Os08g0288000","Conserved hypothetical protein && - && -"]
[8,11409403,11409492,90,35,0.197592565355516,0.112143247898326,0.0854493174571902,153.326226690749,"CHH","Os08g0288000","exon","Os08g0288000","Conserved hypothetical protein && - && -"]
[8,11665293,11665396,104,42,0.145871376104738,0.0703813295911987,0.0754900465135394,193.023926575856,"CHH","8:11664316:11665350","CGI"]
[8,11765921,11766284,364,134,0.353080807676972,0.162599145203001,0.190481662473971,967.481742854593,"CHH","8:11765932:11767932","CGI_shore"]
[8,11881514,11881675,162,47,0.161728664040416,0.0363223855756601,0.125406278464756,297.496416533531,"CHH","Os08g0295200","promoter","Os08g0295200","Conserved hypothetical protein && sp|Q9LJR3|SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 && -"]
[8,11945702,11945819,118,34,0.0825948459943441,0.0181069564832852,0.0644878895110589,166.062026884122,"CHH","8:11944087:11946087","CGI_shore"]
[8,12110321,12110393,73,21,0.255965730574167,0.108561220387754,0.147404510186413,97.0359189612907,"CHH","8:12109647:12111647","CGI_shore"]
[8,12626813,12626965,153,32,0.217381275684159,0.060849959455314,0.156531316228845,194.277745300126,"CHH","8:12619186:12628421","CGI"]
[8,12681795,12682031,237,41,0.419622110037028,0.214291909884297,0.205330200152732,227.876885451137,"CHH","8:12682003:12682269","CGI"]
[8,12875169,12875443,275,42,0.471384367468967,0.183068621136127,0.28831574633284,290.042453902012,"CG","8:12874220:12876221","CGI_shore"]
[8,13353882,13353934,53,20,0.0605433606274623,0.0118274332810227,0.0487159273464396,100.008240027551,"CHH","8:13352594:13354595","CGI_shore"]
[8,13469631,13469702,72,29,0.15286036091871,0.0213926877670019,0.131467673151708,147.873830417851,"CHH","8:13467883:13469884","CGI_shore"]
[8,13981394,13981559,166,54,0.258075969432434,0.0352774286857856,0.222798540746649,300.249354682782,"CHH","8:13980658:13981810","CGI"]
[8,14016910,14016966,57,7,0.315183683853543,0.0280711037862062,0.287112580067337,42.4885020345024,"CHG","8:14016752:14017422","CGI"]
[8,14153260,14153420,161,55,0.0702036762832473,0.0163365140107292,0.0538671622725182,262.031279803446,"CHH","8:14153331:14155332","CGI_shore"]
[8,14356065,14356133,69,15,0.367575366653789,0.220756890852725,0.146818475801065,76.9902645380495,"CHH","Os08g0326600","promoter","Os08g0326600","Similar to GMP synthetase && sp|O66601|GUAA_AQUAE GMP synthase [glutamine-hydrolyzing] OS=Aquifex aeolicus (strain VF5) OX=224324 GN=guaA PE=3 SV=1 && PF00958:GMP synthase C terminal domain|PF00117:Glutamine amidotransferase class-I"]
[8,14469389,14469441,53,18,0.182380510568961,0.0292061383503466,0.153174372218615,88.6720774713109,"CHH","8:14469353:14471129","CGI"]
[8,14871235,14871295,61,24,0.153961735194713,0.0556370757621131,0.0983246594325998,139.720560538136,"CHH","8:14869814:14871814","CGI_shore"]
[8,15114388,15114559,172,16,0.389199339440616,0.087917227743601,0.301282111697015,83.455739327614,"CHH","Os08g0337300","promoter","Os08g0337300","Hypothetical conserved gene && sp|F4K3G5|EDM2_ARATH Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana OX=3702 GN=EDM2 PE=1 SV=1 && -"]
[8,15367761,15367909,149,19,0.394600797530646,0.137654818973391,0.256945978557255,87.1362682622319,"CHG","8:15366917:15368917","CGI_shore"]
[8,15372789,15372867,79,44,0.178480398577306,0.0466586556841836,0.131821742893123,235.177623280213,"CHH","8:15371598:15373599","CGI_shore"]
[8,15490988,15491218,231,69,0.22620644618316,0.0687711670872056,0.157435279095954,396.67349113607,"CHH","8:15490081:15492082","CGI_shore"]
[8,15759436,15759572,137,47,0.16639677845091,0.081829725668256,0.0845670527826545,234.109883860385,"CHH","Os08g0347200","promoter","Os08g0347200","Conserved hypothetical protein && - && -"]
[8,15800068,15800148,81,30,0.0617621165396878,0.0309035026179001,0.0308586139217877,112.086790933953,"CHH","8:15799985:15811088","CGI"]
[8,15901128,15901417,290,116,0.19570201687606,0.0757729564527171,0.119929060423343,723.651101544581,"CHH","8:15901268:15903269","CGI_shore"]
[8,16005805,16005983,179,54,0.219309905170712,0.11729715664275,0.102012748527962,299.832180902775,"CHH","8:16004996:16006996","CGI_shore"]
[8,16048252,16048311,60,22,0.11915688231315,0.0123098586855309,0.106847023627619,97.7997962201501,"CHH","8:16048193:16049180","CGI"]
[8,16353035,16353133,99,15,0.449964932081821,0.305014363344265,0.144950568737557,68.4762200120504,"CHH","8:16351986:16353987","CGI_shore"]
[8,16355147,16355313,167,33,0.603151170032273,0.402826776982412,0.200324393049861,186.728309129539,"CHH","Os08g0357100","utr5","Os08g0357100","Hypothetical gene && - && -"]
[8,16505869,16505944,76,15,0.108402192616271,0.00514377742683616,0.103258415189434,79.4612921523637,"CHH","Os08g0359000","promoter","Os08g0359000","Similar to APE1 && sp|Q55403|Y575_SYNY3 Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0575 PE=4 SV=1 && PF11016:Protein of unknown function (DUF2854)"]
[8,16645221,16645398,178,48,0.17656811720054,0.0827261441062883,0.0938419730942517,222.561399909485,"CHH","8:16643687:16645687","CGI_shore"]
[8,16728384,16728731,348,117,0.169085581410236,0.0685421636348146,0.100543417775421,642.421491592993,"CHH","8:16726853:16728853","CGI_shore"]
[8,17116668,17116751,84,23,0.0910866781106597,0.0294380491846808,0.0616486289259789,93.8983776890485,"CHH","Os08g0367850","utr3","Os08g0367850","Hypothetical gene && - && -"]
[8,17350660,17350838,179,49,0.0973440144545974,0.0246228840506504,0.072721130403947,242.87021332339,"CHH","Os08g0371608","intron","Os08g0371608","Similar to carotenoid cleavage dioxygenase && sp|Q8LP17|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum OX=3888 GN=CCD1 PE=2 SV=1 && PF03055:Retinal pigment epithelial membrane protein"]
[8,17582802,17583008,207,46,0.47966612467371,0.283305099525832,0.196361025147878,303.330495294907,"CG","Os08g0374900","intron","Os08g0374900","Conserved hypothetical protein && - && -"]
[8,17623818,17624022,205,49,0.416211941259771,0.0581862768083418,0.35802566445143,359.789411992962,"CHH","8:17622906:17624906","CGI_shore"]
[8,17902006,17902198,193,39,0.496495318937978,0.215378716403035,0.281116602534943,285.884029317441,"CHH","8:17901552:17903553","CGI_shore"]
[8,18048336,18048468,133,30,0.12349008596965,0.0117722813008739,0.111717804668776,139.213738142183,"CHH","8:18047183:18049183","CGI_shore"]
[8,18082420,18082598,179,44,0.122002058268788,0.0164774843465301,0.105524573922258,218.474604573543,"CHH","8:18080933:18082933","CGI_shore"]
[8,18314604,18314660,57,20,0.15997579988403,0.0634351060335499,0.0965406938504802,109.644402445738,"CHH","8:18313936:18314640","CGI"]
[8,18445579,18445677,99,28,0.106398299965549,0.0394495109844328,0.0669487889811158,122.254582905976,"CHH","8:18445484:18447485","CGI_shore"]
[8,18522010,18522075,66,20,0.802157111792469,0.523521526516383,0.278635585276087,89.5222530177975,"CG","8:18521916:18523342","CGI"]
[8,18696678,18696748,71,17,0.096316790583404,0.0384848382101006,0.0578319523733034,68.5627651571306,"CHH","8:18695757:18697758","CGI_shore"]
[8,18955784,18955844,61,22,0.165890197973423,0.0504881888733411,0.115402009100082,125.632376216004,"CHH","8:18953828:18955828","CGI_shore"]
[8,18971422,18971532,111,36,0.0449060547666127,0.0142309379826327,0.03067511678398,141.110051418733,"CHH","8:18971143:18973144","CGI_shore"]
[8,19129567,19129634,68,25,0.192329179800513,0.0263407931838269,0.165988386616686,121.1956594466,"CHH","8:19128652:19130652","CGI_shore"]
[8,19282348,19282543,196,39,0.355419080724221,0.123438744861455,0.231980335862766,255.044930513655,"CHH","8:19281660:19283661","CGI_shore"]
[8,19369094,19369193,100,14,0.529261073640925,0.256360354773885,0.272900718867041,63.3547789515797,"CHG","8:19367705:19369706","CGI_shore"]
[8,19594466,19594631,166,32,0.274821603046791,0.0957846639942127,0.179036939052578,188.433754017301,"CHH","8:19594129:19596129","CGI_shore"]
[8,19594987,19595187,201,68,0.265484950052731,0.100848791170811,0.164636158881921,409.194276142306,"CHH","8:19594129:19596129","CGI_shore"]
[8,19737322,19737448,127,28,0.108456485074093,0.0333507834542815,0.0751057016198117,139.709164370048,"CHH","8:19736592:19738592","CGI_shore"]
[8,19880714,19880785,72,12,0.100650156997805,0.0169724995421192,0.0836776574556862,89.6990042511947,"CHH","Os08g0415600","intron","plant U-box-containing protein 5, U-box protein 5","Similar to ubiquitin-protein ligase && sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana OX=3702 GN=PUB19 PE=2 SV=1 && PF00514:Armadillo/beta-catenin-like repeat|PF04564:U-box domain"]
[8,19911379,19911653,275,87,0.184643666179935,0.0849264649135669,0.0997172012663685,375.509772571696,"CHH","8:19911613:19912072","CGI"]
[8,20168181,20168277,97,19,0.155370740137507,0.0398656250434122,0.115505115094095,88.3679861697075,"CHH","8:20160579:20172127","CGI"]
[8,20262229,20262462,234,60,0.147874831880667,0.0374983500068114,0.110376481873856,337.096260905625,"CHH","8:20261986:20263986","CGI_shore"]
[8,20309744,20309970,227,60,0.104376997089935,0.0217157003749956,0.0826612967149395,342.084384931302,"CHH","8:20309173:20311173","CGI_shore"]
[8,20489425,20489506,82,29,0.116005889494477,0.0363364972811966,0.07966939221328,141.508787516228,"CHH","8:20487897:20489897","CGI_shore"]
[8,20826024,20826112,89,22,0.263030512463961,0.0804644308890916,0.18256608157487,97.7215735989075,"CHH","8:20824984:20826985","CGI_shore"]
[8,20868811,20868865,55,17,0.853859850891474,0.758551775176274,0.0953080757152001,57.6743881211016,"CG","8:20861301:20869606","CGI"]
[8,21313842,21314030,189,33,0.385097900027154,0.214274040022175,0.170823860004979,156.502584371738,"CHH","8:21312728:21314728","CGI_shore"]
[8,21529972,21530175,204,73,0.109859856799774,0.0374094652630291,0.0724503915367452,327.414112798972,"CHH","Target=RETROFIT_I-int:2883-3328;Class=LTR/Copia","repeat"]
[8,21535719,21535821,103,47,0.147076217353381,0.0756918543908729,0.0713843629625083,220.003445810172,"CHH","Os08g0441900","promoter","Os08g0441900","Hypothetical conserved gene && - && PF12874:Zinc-finger of C2H2 type"]
[8,21642606,21642660,55,12,0.166412983569716,0.0593946959435826,0.107018287626133,75.0134296182253,"CHH","8:21641881:21643882","CGI_shore"]
[8,21755003,21755053,51,9,0.434358537624805,0.238940947657245,0.19541758996756,37.8569572064564,"CHG","8:21753171:21755172","CGI_shore"]
[8,21755003,21755053,51,9,0.434358537624805,0.238940947657245,0.19541758996756,37.8569572064564,"CHG","8:21754392:21756393","CGI_shore"]
[8,21755834,21755893,60,9,0.337135723928966,0.204770067649112,0.132365656279854,37.0746753793981,"CG","8:21755166:21756042","CGI"]
[8,21763857,21763907,51,19,0.208211121906331,0.0814236161767489,0.126787505729582,117.38059484413,"CHH","Os08g0446200","promoter","Os08g0446200","Similar to Receptor-like protein kinase precursor (EC 2.7.1.37). Splice isoform INRPK1a && sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil OX=35883 GN=INRPK1 PE=2 SV=2 && PF00069:Protein kinase domain|PF08263:Leucine rich repeat N-terminal domain"]
[8,21773544,21773711,168,55,0.137884054516885,0.0368770257599738,0.101007028756911,254.981555527223,"CHH","8:21773520:21775521","CGI_shore"]
[8,21958184,21958447,264,68,0.370094559968681,0.0821494109790953,0.287945148989586,464.733428392399,"CHH","8:21957620:21958810","CGI"]
[8,22106842,22106937,96,18,0.405089331740798,0.240501765206283,0.164587566534516,78.4961023650415,"CHH","Os08g0452100","promoter","Subtilisin 56, SUBTILISIN 56","Similar to Subtilisin-like serine protease && sp|Q9LUM3|SBT15_ARATH Subtilisin-like protease SBT1.5 OS=Arabidopsis thaliana OX=3702 GN=SBT1.5 PE=2 SV=1 && PF00082:Subtilase family|PF17766:Fibronectin type-III domain|PF02225:PA domain|PF13445:RING-type zinc-finger|PF05922:Peptidase inhibitor I9"]
[8,22176700,22176903,204,51,0.194817148716361,0.0759030237315708,0.118914124984791,286.141028972773,"CHH","8:22176325:22178326","CGI_shore"]
[8,22529441,22529539,99,22,0.398629484333008,0.237423740203047,0.161205744129961,105.331730520967,"CHH","8:22529155:22531156","CGI_shore"]
[8,22684709,22684771,63,14,0.265656971300614,0.0332243288439492,0.232432642456665,71.9724536181416,"CHH","Os08g0462000","exon","Os08g0462000","Hypothetical conserved gene && - && -"]
[8,22877880,22877997,118,29,0.385561901653875,0.205291953808493,0.180269947845382,145.162167605798,"CHH","8:22877037:22879037","CGI_shore"]
[8,23072686,23072772,87,21,0.281743419461167,0.163689105887503,0.118054313573664,105.121300429274,"CHH","Os08g0469200","intron","Os08g0469200","Similar to salt tolerant protein && - && -"]
[8,23186650,23186830,181,58,0.190588290655017,0.100693379738036,0.0898949109169811,266.909001773958,"CHH","Os08g0471300","utr3","Os08g0471300","Similar to Methyl-CpG binding protein-like && - && -"]
[8,23206078,23206196,119,48,0.162791943107507,0.0600914372717127,0.102700505835795,223.659071740791,"CHH","8:23204920:23207939","CGI"]
[8,23386031,23386101,71,13,0.461331992538958,0.10717935396212,0.354152638576838,90.6649864962125,"CHH","8:23385657:23387658","CGI_shore"]
[8,23580989,23581059,71,22,0.0933248365557842,0.0376626779640746,0.0556621585917096,98.0813706048587,"CHH","8:23579238:23581239","CGI_shore"]
[8,23682682,23682946,265,72,0.159473208858806,0.0506111362127128,0.108862072646093,373.949454797277,"CHH","8:23681668:23683669","CGI_shore"]
[8,23806400,23806528,129,31,0.453780514066048,0.0917145645966109,0.362065949469437,219.637631163955,"CHH","8:23805625:23807625","CGI_shore"]
[8,23987055,23987131,77,25,0.082167383475768,0.0143898778647486,0.0677775056110194,120.169389608041,"CHH","8:23985878:23987878","CGI_shore"]
[8,24119803,24119869,67,13,0.53883601762943,0.323998347934048,0.214837669695382,83.6362886804453,"CG","8:24119728:24120072","CGI"]
[8,24410763,24410893,131,35,0.262823178501103,0.135080080906079,0.127743097595024,208.834087475597,"CHH","Os08g0494400","exon","Os08g0494400","Conserved hypothetical protein && - && -"]
[8,24471031,24471334,304,61,0.440524970662302,0.250556547869814,0.189968422792488,389.574381191095,"CHH","8:24469897:24471898","CGI_shore"]
[8,24750599,24750951,353,107,0.108405676297307,0.0351402675747957,0.0732654087225118,534.102532482055,"CHH","Os08g0501200","exon","WALL-ASSOCIATED KINASE GENE 73","EGF-type aspartate/asparagine hydroxylation site domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding|PF07714:Protein tyrosine kinase"]
[8,24958880,24959107,228,78,0.257364984336903,0.106292812628351,0.151072171708551,476.72886319763,"CHH","8:24957903:24960156","CGI"]
[8,25067925,25068050,126,41,0.156702659806707,0.0284386189081437,0.128264040898563,205.154925451143,"CHH","8:25066570:25068329","CGI"]
[8,25121108,25121218,111,17,0.575674343183965,0.313584541077424,0.262089802106541,72.997114284115,"CG","8:25120623:25122019","CGI"]
[8,25283553,25283671,119,32,0.14163604460327,0.0172610757873734,0.124374968815896,177.333742763354,"CHH","8:25282378:25284379","CGI_shore"]
[8,25385323,25385396,74,25,0.306890439358736,0.186608071139986,0.12028236821875,111.636405326108,"CHH","Os08g0511800","exon","Os08g0511800","Conserved hypothetical protein && - && -"]
[8,25903808,25903894,87,19,0.353473728142762,0.212806483378264,0.140667244764498,104.221211674937,"CHH","8:25902287:25904288","CGI_shore"]
[8,26031240,26031399,160,67,0.186896297328011,0.0905381264622686,0.0963581708657423,348.717191276376,"CHH","8:26031238:26033239","CGI_shore"]
[8,26169246,26169444,199,16,0.175127106603459,0.0227932150109857,0.152333891592473,79.1753517298756,"CHH","8:26168159:26170159","CGI_shore"]
[8,26334954,26335010,57,27,0.133745557372433,0.0569384543993926,0.0768071029730406,94.5214979912605,"CG","8:26333970:26335555","CGI"]
[8,26723394,26723586,193,54,0.727478962299472,0.56723934534244,0.160239616957032,258.537978711309,"CG","8:26718746:26727385","CGI"]
[8,26871132,26871361,230,69,0.0840585208080557,0.0205483458519581,0.0635101749560976,367.594635090816,"CHH","Os08g0537600","utr3","Os08g0537600","Arf GTPase activating protein family protein && sp|Q5W7F2|AGD3_ARATH ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana OX=3702 GN=AGD3 PE=1 SV=1 && -"]
[8,26907696,26907937,242,52,0.401328931343262,0.196797021226825,0.204531910116436,320.214967842488,"CHH","8:26906894:26908894","CGI_shore"]
[8,26994489,26994670,182,54,0.0591079842422381,0.00296797605765928,0.0561400081845788,282.776958146625,"CHH","Os08g0539700","intron","PYRICULARIA ORYZAE RESISTANCE  BH8","NB-ARC domain containing protein && sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana OX=3702 GN=RPP13 PE=2 SV=2 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[8,27033544,27033764,221,65,0.314367400727953,0.141960849797219,0.172406550930735,387.175398177533,"CHH","Os08g0540100","promoter","Os08g0540100","Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase) && sp|P54967|BIOB_ARATH Biotin synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BIO2 PE=1 SV=1 && PF06968:Biotin and Thiamin Synthesis associated domain|PF04055:Radical SAM superfamily"]
[8,27404656,27404756,101,25,0.554235007179364,0.38914552901467,0.165089478164694,118.093280064661,"CHH","Os08g0547100","intron","Os08g0547100","Similar to 6-phosphogluconolactonase && sp|A2YXS5|6PGL3_ORYSI Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30141 PE=3 SV=2 && PF01182:Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase"]
[8,28135835,28136030,196,54,0.184453934323091,0.0143425572137985,0.170111377109293,335.553712867716,"CHH","Os08g0561800","exon","Os08g0561800","Similar to Mov34/MPN/PAD-1 family protein && - && -"]
[8,28135987,28136037,51,9,0.876936658374529,0.697443734119107,0.179492924255423,46.5535503724619,"CG","Os08g0561800","utr5","Os08g0561800","Similar to Mov34/MPN/PAD-1 family protein && - && -"]
[8,28316793,28317114,322,120,0.168340863209059,0.0559176800456377,0.112423183163422,620.837054634033,"CHH","8:28316443:28317102","CGI"]
[9,21265,21337,73,8,0.904355399141729,0.778510045233436,0.125845353908294,43.4232909376189,"CG","ENSRNA049476444","exon","SSU_rRNA_eukarya","Eukaryotic small subunit ribosomal RNA && - && -"]
[9,65431,65481,51,24,0.216408329662182,0.162904379099235,0.0535039505629475,85.4856256006388,"CHH","9:1089:92951","CGI"]
[9,108589,108656,68,23,0.261974794571685,0.117102811618793,0.144871982952892,125.079463353374,"CG","9:108486:110486","CGI_shore"]
[9,265133,265228,96,27,0.0852855283757895,0.0268797581730452,0.0584057702027443,136.008535826445,"CHH","9:263794:265794","CGI_shore"]
[9,265133,265228,96,27,0.0852855283757895,0.0268797581730452,0.0584057702027443,136.008535826445,"CHH","9:264817:266818","CGI_shore"]
[9,427535,427668,134,45,0.084572655182945,0.0202103882068888,0.0643622669760562,258.038869747387,"CHH","Os09g0103300","promoter","Os09g0103300","Conserved hypothetical protein && - && -"]
[9,715023,715095,73,17,0.0476698799192182,0.00411342548949599,0.0435564544297223,112.224815203772,"CHH","9:714903:716904","CGI_shore"]
[9,832012,832149,138,36,0.248680955567225,0.0462240287324954,0.20245692683473,225.454550628822,"CHH","Os09g0109150","promoter","Os09g0109150","Hypothetical conserved gene && - && -"]
[9,1042953,1043214,262,62,0.299710481530285,0.112456264630115,0.187254216900169,416.394886147045,"CHH","9:1041185:1043185","CGI_shore"]
[9,1346984,1347107,124,48,0.132384803015758,0.0301382719402199,0.102246531075538,242.390619615863,"CHH","9:1346221:1348222","CGI_shore"]
[9,1382990,1383082,93,25,0.0761510594690989,0.0105241969416298,0.0656268625274692,101.685482725264,"CHH","9:1381130:1383131","CGI_shore"]
[9,1789059,1789272,214,73,0.188073174312943,0.0864125387637099,0.101660635549233,366.134755944124,"CHH","Os09g0123200","promoter","OSFCA PROTEIN","FCA-like protein, FCA gamma protein, Flowering time related protein involved in autonomous flowering pathwa && sp|Q6K271|FCA_ORYSJ Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=FCA PE=1 SV=1 && PF00397:WW domain|PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[9,1880174,1880270,97,32,0.179124895788571,0.0290704928318421,0.150054402956729,152.93824501486,"CHH","Os09g0124300","promoter","Os09g0124300","Hypothetical conserved gene && - && -"]
[9,1889987,1890183,197,69,0.174439639492948,0.0581049227244215,0.116334716768526,401.076740134123,"CHH","9:1890015:1892015","CGI_shore"]
[9,2131407,2131639,233,68,0.231876766140942,0.124147878652204,0.107728887488738,373.633712752082,"CHH","Os09g0128101","intron","Os09g0128101","Hypothetical protein && sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 && -"]
[9,2189094,2189157,64,21,0.130314360423281,0.0245868152141444,0.105727545209136,134.840906094348,"CHH","Os09g0128400","promoter","Os09g0128400","Conserved hypothetical protein && - && -"]
[9,2553668,2553757,90,24,0.1492449825095,0.027493747602311,0.121751234907189,117.913250175355,"CHH","9:2553491:2555491","CGI_shore"]
[9,2712448,2712546,99,46,0.842984299793838,0.658709919062167,0.184274380731671,240.698817769779,"CG","9:2706244:2714930","CGI"]
[9,2912307,2912542,236,94,0.133502565491148,0.0531189747483454,0.080383590742803,460.939540432147,"CHH","9:2912522:2914232","CGI"]
[9,2955170,2955325,156,21,0.326043653275118,0.136333466399767,0.189710186875351,109.67014722092,"CHG","Os09g0238700","utr3","Os09g0238700","Conserved hypothetical protein && - && -"]
[9,3055589,3055649,61,17,0.119632293037685,0.0472424350079686,0.0723898580297169,79.6295988532311,"CHH","Os09g0240200","intron","CONSTANS-like gene B, B-box-containing protein 27, CCT domain-containing gene 31, CCT (CO, CO-LIKE and TOC1) domain protein 31, CCT domain protein 31","Zinc finger, B-box domain containing protein && sp|O82117|CO3_ORYSJ Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=1 && PF06203:CCT motif|PF00643:B-box zinc finger"]
[9,3057370,3057594,225,92,0.226747446173192,0.0729153374196534,0.153832108753538,474.741671241848,"CHH","Os09g0240200","intron","CONSTANS-like gene B, B-box-containing protein 27, CCT domain-containing gene 31, CCT (CO, CO-LIKE and TOC1) domain protein 31, CCT domain protein 31","Zinc finger, B-box domain containing protein && sp|O82117|CO3_ORYSJ Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=1 && PF06203:CCT motif|PF00643:B-box zinc finger"]
[9,3106150,3106247,98,33,0.10131390912202,0.0182353345772389,0.0830785745447808,154.482930043561,"CHH","Os09g0240850","TES","Os09g0240850","Hypothetical conserved gene && - && -"]
[9,3234425,3234483,59,21,0.315934293713473,0.187088732501763,0.12884556121171,90.0688924586791,"CHH","9:3233894:3235895","CGI_shore"]
[9,3280623,3280681,59,31,0.157902732350175,0.0244415645013705,0.133461167848805,159.957798527259,"CHH","9:3278852:3280852","CGI_shore"]
[9,3367404,3367651,248,69,0.144077441878632,0.0302800258469058,0.113797416031726,314.962622694947,"CHH","Os09g0244900","promoter","Os09g0244900","Transport protein particle (TRAPP) component domain containing protein && sp|F1QMV3|TPC6B_DANRE Trafficking protein particle complex subunit 6b OS=Danio rerio OX=7955 GN=trappc6b PE=2 SV=1 && PF04051:Transport protein particle (TRAPP) component"]
[9,3415870,3416253,384,103,0.0684444563411696,0.0337664434924695,0.0346780128487001,573.650302992453,"CG","9:3407750:3417775","CGI"]
[9,3755194,3755301,108,25,0.181444053850805,0.0122592060105565,0.169184847840249,155.170327368461,"CHH","9:3755008:3757009","CGI_shore"]
[9,3870139,3870232,94,14,0.25515425494716,0.0880600864574084,0.167094168489752,75.3387130118031,"CHH","9:3869885:3871885","CGI_shore"]
[9,3886349,3886494,146,28,0.276733465916797,0.115083150411467,0.16165031550533,146.929458421509,"CHH","9:3885854:3887855","CGI_shore"]
[9,4105303,4105500,198,53,0.159606074381501,0.0486900876395799,0.110915986741921,260.835396144484,"CHH","Os09g0254050","exon","Os09g0254050","Similar to seven-transmembrane-domain protein 1 && sp|Q0J349|SWT7B_ORYSJ Bidirectional sugar transporter SWEET7b OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET7B PE=3 SV=2 && PF03083:Sugar efflux transporter for intercellular exchange"]
[9,4360561,4360682,122,12,0.266372094895245,0.0933265594236111,0.173045535471634,47.7176818193655,"CHG","9:4359304:4361304","CGI_shore"]
[9,4401635,4401729,95,40,0.23708309048839,0.146408271941739,0.0906748185466514,175.583326246172,"CHH","9:4401626:4403627","CGI_shore"]
[9,4488153,4488505,353,98,0.223288023445941,0.117317412534996,0.105970610910945,549.301587711527,"CHH","9:4486883:4488883","CGI_shore"]
[9,4489969,4490361,393,107,0.249227596628453,0.0784759412706387,0.170751655357814,818.461980550942,"CHH","9:4489383:4491384","CGI_shore"]
[9,4590548,4590620,73,22,0.0881793775393257,0.0221644112476376,0.0660149662916882,106.856732746587,"CHH","Os09g0262000","promoter","Os09g0262000","Similar to Cinnamoyl CoA reductase && sp|Q6K9A2|CCR1_ORYSJ Cinnamoyl-CoA reductase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCR1 PE=1 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[9,4649080,4649258,179,58,0.290807211417591,0.148092492347428,0.142714719070163,361.595669717983,"CHH","9:4648727:4650727","CGI_shore"]
[9,4771654,4771893,240,94,0.134970798358222,0.0543553530553835,0.0806154453028383,524.686117261024,"CHH","9:4770020:4772021","CGI_shore"]
[9,4790651,4790832,182,62,0.0822962432211459,0.0298250542935459,0.0524711889276,252.4983502662,"CHH","9:4790458:4792459","CGI_shore"]
[9,4960192,4960350,159,45,0.195703451238095,0.0738937303749111,0.121809720863184,214.001643741735,"CHH","9:4958312:4960313","CGI_shore"]
[9,5136519,5136635,117,35,0.133221006299344,0.0473603200206075,0.0858606862787369,159.772162204716,"CHH","9:5135921:5137921","CGI_shore"]
[9,5383631,5383819,189,39,0.245819824143025,0.0626242801400639,0.183195544002961,204.017550832152,"CHH","9:5383751:5384352","CGI"]
[9,5451660,5451818,159,67,0.156063993025135,0.0726463276657725,0.0834176653593621,293.315135639363,"CHH","9:5450256:5452257","CGI_shore"]
[9,5780909,5780997,89,29,0.0655474782530872,0.0081412207536599,0.0574062574994273,133.083688678986,"CHH","9:5779824:5781824","CGI_shore"]
[9,5788421,5788528,108,34,0.100124117830613,0.0186676160242554,0.0814565018063579,150.62576918103,"CHH","9:5787100:5789101","CGI_shore"]
[9,6050471,6050543,73,14,0.0960932235290163,0.0118920117932642,0.084201211735752,87.567275636628,"CHH","9:6050368:6052368","CGI_shore"]
[9,6445442,6445615,174,44,0.344497970234437,0.147427686765858,0.197070283468579,210.551867493075,"CHH","9:6443698:6445699","CGI_shore"]
[9,7017677,7017773,97,11,0.40254263199678,0.0926423085686737,0.309900323428106,58.8330596636143,"CHG","Os09g0294300","exon","UBIQUITIN-CONJUGATING ENZYME 40","Ubiquitin-conjugating enzyme/RWD-like domain containing protein && sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 && PF00179:Ubiquitin-conjugating enzyme"]
[9,7121921,7122144,224,49,0.299219530097925,0.131654853388547,0.167564676709378,282.014126500964,"CHH","9:7121220:7123220","CGI_shore"]
[9,7729274,7729399,126,36,0.0934936815035009,0.0103984412213601,0.0830952402821408,187.858216036036,"CHH","9:7727393:7729394","CGI_shore"]
[9,7797242,7797348,107,37,0.130206061936393,0.0519964344847309,0.0782096274516621,167.830886842479,"CHH","9:7791113:7800333","CGI"]
[9,8308238,8308531,294,105,0.134439037338466,0.0407974351619488,0.0936416021765172,544.680944248473,"CHH","9:8308056:8310057","CGI_shore"]
[9,8714727,8714928,202,62,0.0720513788475671,0.0148760346430046,0.0571753442045625,308.776826592754,"CHH","9:8714363:8716363","CGI_shore"]
[9,9426834,9426937,104,35,0.177725838865464,0.0565971026737984,0.121128736191666,210.076917107162,"CHH","9:9426530:9428530","CGI_shore"]
[9,9454441,9454633,193,36,0.441351848962339,0.258978873924791,0.182372975037548,183.803325458802,"CHH","9:9454196:9456197","CGI_shore"]
[9,9488343,9488591,249,76,0.178476532318202,0.0466270202466594,0.131849512071543,394.097730490788,"CHH","9:9486058:9521056","CGI"]
[9,9544437,9544494,58,14,0.862067373297636,0.698230493811362,0.163836879486274,63.5558940648856,"CG","9:9544061:9546244","CGI"]
[9,9839899,9840102,204,33,0.663489738379931,0.128989443460201,0.53450029491973,312.144436865869,"CG","9:9839583:9844426","CGI"]
[9,9869617,9869697,81,25,0.196191906525828,0.0581089415613268,0.138082964964501,120.571931711223,"CHH","9:9867991:9869992","CGI_shore"]
[9,10078849,10078993,145,54,0.156632016745258,0.0193981059181901,0.137233910827068,322.28389194496,"CHH","9:10077202:10079203","CGI_shore"]
[9,10119109,10119159,51,5,0.458227541649194,0.231094355739746,0.227133185909448,18.7718307274199,"CHG","9:10118807:10120807","CGI_shore"]
[9,10278060,10278135,76,16,0.114506266645035,0.0464122890254988,0.0680939776195358,76.869371811613,"CHH","9:10277733:10279734","CGI_shore"]
[9,10714576,10714684,109,27,0.168250410631418,0.0537538422482861,0.114496568383131,125.360509161108,"CG","9:10714574:10714824","CGI"]
[9,10842067,10842206,140,51,0.0993603950339814,0.0249315938662542,0.0744288011677272,266.696441623983,"CHH","9:10841331:10843331","CGI_shore"]
[9,11241357,11241503,147,62,0.196949232084677,0.0748960635761641,0.122053168508513,311.754440238085,"CHH","Os09g0352400","promoter","Os09g0352400","Similar to Bystin && sp|Q8RWS4|BYST_ARATH Bystin OS=Arabidopsis thaliana OX=3702 GN=ENP1 PE=1 SV=1 && PF05291:Bystin"]
[9,11242828,11242929,102,28,0.135239966927705,0.00699872895840318,0.128241237969302,190.995220759801,"CHH","9:11241761:11243761","CGI_shore"]
[9,11242828,11242929,102,28,0.135239966927705,0.00699872895840318,0.128241237969302,190.995220759801,"CHH","9:11241967:11243968","CGI_shore"]
[9,11448907,11448984,78,21,0.812236124857198,0.445427936288003,0.366808188569195,93.7447547951598,"CG","Os09g0356200","intron","Os09g0356200","Malectin-like carbohydrate-binding domain domain containing protein && sp|O64556|Y2923_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 OS=Arabidopsis thaliana OX=3702 GN=At2g19230 PE=1 SV=3 && -"]
[9,11448907,11448984,78,21,0.812236124857198,0.445427936288003,0.366808188569195,93.7447547951598,"CG","Os09g0356300","exon","Os09g0356300","Hypothetical conserved gene && - && -"]
[9,11448907,11448984,78,21,0.812236124857198,0.445427936288003,0.366808188569195,93.7447547951598,"CG","Os09g0356300","utr3","Os09g0356300","Hypothetical conserved gene && - && -"]
[9,11637299,11637451,153,32,0.145303105835048,0.0562453447654074,0.089057761069641,150.952245863336,"CHH","9:11636487:11638488","CGI_shore"]
[9,11638029,11638159,131,39,0.142071721486439,0.0650723471166399,0.0769993743697988,187.864649424741,"CHH","9:11636487:11638488","CGI_shore"]
[9,11758060,11758209,150,35,0.112499786506357,0.00645729422262923,0.106042492283728,147.239787786011,"CHH","9:11757093:11759093","CGI_shore"]
[9,11758060,11758209,150,35,0.112499786506357,0.00645729422262923,0.106042492283728,147.239787786011,"CHH","9:11757823:11759824","CGI_shore"]
[9,11971396,11971605,210,74,0.230649920833432,0.0471958953207688,0.183454025512663,463.146340273172,"CHH","9:11971346:11973347","CGI_shore"]
[9,11971463,11971528,66,7,0.728985749581255,0.368573991410096,0.360411758171158,31.6703865813659,"CHG","9:11971346:11973347","CGI_shore"]
[9,11997653,11997740,88,18,0.174043238193798,0.0813928245349588,0.0926504136588393,78.6008677151829,"CHH","Os09g0365300","promoter","Os09g0365300","NB-ARC domain containing protein && sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1 && PF00931:NB-ARC domain"]
[9,11997653,11997740,88,18,0.174043238193798,0.0813928245349588,0.0926504136588393,78.6008677151829,"CHH","9:11996702:11998702","CGI_shore"]
[9,12022713,12022828,116,46,0.054773799089035,0.032204946646048,0.022568852442987,167.634286339359,"CHH","9:12021332:12023332","CGI_shore"]
[9,12022713,12022828,116,46,0.054773799089035,0.032204946646048,0.022568852442987,167.634286339359,"CHH","9:12021958:12023958","CGI_shore"]
[9,12027756,12027874,119,24,0.119444330322478,0.0235678482290427,0.0958764820934351,114.413058347781,"CHH","9:12025891:12027892","CGI_shore"]
[9,12052273,12052396,124,41,0.076952817170262,0.0216575762729883,0.0552952408972737,161.041137493801,"CHH","9:12052210:12054211","CGI_shore"]
[9,12090863,12090926,64,20,0.123086159611718,0.0041179872715437,0.118968172340174,103.348783568933,"CHH","9:12090108:12092109","CGI_shore"]
[9,12093079,12093212,134,25,0.23100695666349,0.0771716834063261,0.153835273257164,118.735415421817,"CHH","9:12091283:12093283","CGI_shore"]
[9,12153586,12153793,208,34,0.210672613872067,0.0119947632897651,0.198677850582302,225.58494403182,"CHH","Os09g0368200","intron","POLYAMINE OXIDASE B","Similar to polyamine oxidase precursor && sp|A0A0P0XM10|PAO6_ORYSJ Polyamine oxidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=PAO6 PE=2 SV=1 && PF01593:Flavin containing amine oxidoreductase"]
[9,12153586,12153793,208,34,0.210672613872067,0.0119947632897651,0.198677850582302,225.58494403182,"CHH","9:12153647:12155647","CGI_shore"]
[9,12162631,12162728,98,29,0.0555092529601183,0.00868632286085148,0.0468229300992668,106.893855166489,"CHH","9:12159428:12162668","CGI"]
[9,12162631,12162728,98,29,0.0555092529601183,0.00868632286085148,0.0468229300992668,106.893855166489,"CHH","9:12162668:12164669","CGI_shore"]
[9,12197339,12197474,136,52,0.172922626811969,0.0468940482562719,0.126028578555697,226.84699097087,"CG","9:12196746:12197646","CGI"]
[9,12197339,12197474,136,52,0.172922626811969,0.0468940482562719,0.126028578555697,226.84699097087,"CG","9:12197303:12199303","CGI_shore"]
[9,12374009,12374398,390,149,0.16767532562556,0.0790870630350363,0.0885882625905241,746.707455844032,"CHH","9:12364701:12378175","CGI"]
[9,12393969,12394036,68,16,0.143795415327838,0.0417223283870793,0.102073086940759,70.0577744863748,"CHH","9:12392031:12394031","CGI_shore"]
[9,12393969,12394036,68,16,0.143795415327838,0.0417223283870793,0.102073086940759,70.0577744863748,"CHH","9:12394032:12398814","CGI"]
[9,12394511,12394611,101,41,0.102813086405973,0.0207171537455696,0.0820959326604038,178.765703868856,"CHH","9:12394032:12398814","CGI"]
[9,12400574,12400633,60,16,0.153518230888316,0.0694314128421507,0.0840868180461656,89.2168533510687,"CHH","9:12398814:12400815","CGI_shore"]
[9,12420408,12420508,101,27,0.133841219822406,0.0463062379823781,0.0875349818400276,116.171770052934,"CHH","9:12419340:12421341","CGI_shore"]
[9,12460507,12460699,193,51,0.279464428272965,0.110508286946139,0.168956141326826,257.182312077878,"CHH","9:12460173:12462173","CGI_shore"]
[9,12460507,12460699,193,51,0.279464428272965,0.110508286946139,0.168956141326826,257.182312077878,"CHH","9:12460266:12460945","CGI"]
[9,12465276,12465343,68,30,0.15930060072828,0.101347773993778,0.0579528267345017,133.296756880825,"CHH","9:12464413:12466413","CGI_shore"]
[9,12483223,12483299,77,20,0.477314459698943,0.331829292462339,0.145485167236605,89.799803556093,"CHH","9:12482355:12484355","CGI_shore"]
[9,12492516,12492583,68,17,0.0970366124815354,0.0217239622782332,0.0753126502033022,104.846116852083,"CHH","Os09g0373750","utr5","Os09g0373750","Hypothetical gene && - && -"]
[9,12492516,12492583,68,17,0.0970366124815354,0.0217239622782332,0.0753126502033022,104.846116852083,"CHH","Os09g0373750","exon","Os09g0373750","Hypothetical gene && - && -"]
[9,12492516,12492583,68,17,0.0970366124815354,0.0217239622782332,0.0753126502033022,104.846116852083,"CHH","9:12491166:12493166","CGI_shore"]
[9,12492516,12492583,68,17,0.0970366124815354,0.0217239622782332,0.0753126502033022,104.846116852083,"CHH","9:12491933:12493934","CGI_shore"]
[9,12669049,12669121,73,32,0.166839054800706,0.0856768915290208,0.0811621632716853,155.086203642629,"CHH","9:12667503:12669504","CGI_shore"]
[9,12669049,12669121,73,32,0.166839054800706,0.0856768915290208,0.0811621632716853,155.086203642629,"CHH","Os09g0376900","promoter","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 23","Similar to Potassium transporter 13 (AtPOT13) (AtKT5) && sp|Q6H4R6|HAK23_ORYSJ Potassium transporter 23 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK23 PE=2 SV=1 && -"]
[9,12675179,12675291,113,24,0.396457296674958,0.141090700182685,0.255366596492274,141.19529461591,"CHH","9:12673673:12675674","CGI_shore"]
[9,12675179,12675291,113,24,0.396457296674958,0.141090700182685,0.255366596492274,141.19529461591,"CHH","9:12674104:12676104","CGI_shore"]
[9,12675662,12675848,187,33,0.26489502638952,0.0907292962525403,0.17416573013698,174.411373734122,"CHH","9:12673673:12675674","CGI_shore"]
[9,12675662,12675848,187,33,0.26489502638952,0.0907292962525403,0.17416573013698,174.411373734122,"CHH","9:12674104:12676104","CGI_shore"]
[9,12743212,12743289,78,26,0.375769141298521,0.150510129193944,0.225259012104578,118.563290944183,"CHH","9:12737458:12758756","CGI"]
[9,12746594,12746826,233,90,0.207846108499351,0.0477256788721912,0.16012042962716,423.815511742967,"CG","9:12737458:12758756","CGI"]
[9,12746594,12746826,233,90,0.207846108499351,0.0477256788721912,0.16012042962716,423.815511742967,"CG","Os09g0378700","exon","plant U-box-containing protein 6, U-box protein 6","Similar to ubiquitin-protein ligase && sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=PUB18 PE=1 SV=1 && PF04564:U-box domain"]
[9,12784921,12785089,169,51,0.166966133312837,0.0462758929914482,0.120690240321389,282.376878330209,"CHH","9:12783020:12785020","CGI_shore"]
[9,12784921,12785089,169,51,0.166966133312837,0.0462758929914482,0.120690240321389,282.376878330209,"CHH","9:12783541:12785542","CGI_shore"]
[9,12784921,12785089,169,51,0.166966133312837,0.0462758929914482,0.120690240321389,282.376878330209,"CHH","Os09g0379600","promoter","HOMEOBOX GENE 25","Similar to Homeobox-leucine zipper protein HOX25 && sp|A3BYC1|HOX25_ORYSJ Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX25 PE=2 SV=2 && -"]
[9,12784921,12785089,169,51,0.166966133312837,0.0462758929914482,0.120690240321389,282.376878330209,"CHH","9:12785021:12785537","CGI"]
[9,12792941,12793061,121,48,0.299287042653454,0.118858346950514,0.180428695702941,221.386822693896,"CHH","9:12792853:12794854","CGI_shore"]
[9,12800014,12800206,193,50,0.141388975571063,0.0133418170829733,0.12804715848809,362.815220053827,"CHH","9:12798915:12800916","CGI_shore"]
[9,12800014,12800206,193,50,0.141388975571063,0.0133418170829733,0.12804715848809,362.815220053827,"CHH","9:12800092:12802092","CGI_shore"]
[9,12930914,12931196,283,98,0.178164978631374,0.0872252140596155,0.0909397645717583,547.960141165898,"CHH","9:12930865:12932866","CGI_shore"]
[9,12988432,12988492,61,20,0.291661432250856,0.185790411006625,0.105871021244231,94.4912368774738,"CHH","9:12987673:12989673","CGI_shore"]
[9,12988432,12988492,61,20,0.291661432250856,0.185790411006625,0.105871021244231,94.4912368774738,"CHH","9:12988383:12990384","CGI_shore"]
[9,13143402,13143462,61,16,0.144590230399254,0.0334517455616921,0.111138484837562,100.735906488596,"CHH","Os09g0385300","utr3","Os09g0385300","Hypothetical protein && - && -"]
[9,13143402,13143462,61,16,0.144590230399254,0.0334517455616921,0.111138484837562,100.735906488596,"CHH","Os09g0385300","exon","Os09g0385300","Hypothetical protein && - && -"]
[9,13166932,13167021,90,19,0.100194976612734,0.0102032242618741,0.0899917523508594,93.0561805795748,"CHH","Os09g0386200","promoter","plant U-box-containing protein 18, U-box protein 18","Armadillo-like helical domain containing protein && sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=PUB39 PE=1 SV=2 && PF04564:U-box domain"]
[9,13166932,13167021,90,19,0.100194976612734,0.0102032242618741,0.0899917523508594,93.0561805795748,"CHH","9:13146435:13167450","CGI"]
[9,13167503,13167628,126,24,0.541679575939451,0.381738481592292,0.159941094347159,105.518610498751,"CHH","Os09g0386200","promoter","plant U-box-containing protein 18, U-box protein 18","Armadillo-like helical domain containing protein && sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=PUB39 PE=1 SV=2 && PF04564:U-box domain"]
[9,13167503,13167628,126,24,0.541679575939451,0.381738481592292,0.159941094347159,105.518610498751,"CHH","9:13167450:13169451","CGI_shore"]
[9,13180362,13180649,288,72,0.278287058883717,0.144418743858042,0.133868315025675,384.84743056634,"CHH","Os09g0386500","promoter","Os09g0386500","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 && PF00628:PHD-finger|PF01426:BAH domain"]
[9,13180362,13180649,288,72,0.278287058883717,0.144418743858042,0.133868315025675,384.84743056634,"CHH","9:13179483:13181483","CGI_shore"]
[9,13204009,13204129,121,32,0.274981089849833,0.0871823159515427,0.187798773898291,180.454884563812,"CHH","9:13203278:13205278","CGI_shore"]
[9,13204009,13204129,121,32,0.274981089849833,0.0871823159515427,0.187798773898291,180.454884563812,"CHH","9:13203725:13205726","CGI_shore"]
[9,13211245,13211331,87,24,0.15629153547285,0.0424275594711928,0.113863976001657,135.950342633148,"CHH","Os09g0387150","exon","Os09g0387150","Conserved hypothetical protein && - && -"]
[9,13211245,13211331,87,24,0.15629153547285,0.0424275594711928,0.113863976001657,135.950342633148,"CHH","9:13211045:13212070","CGI"]
[9,13548794,13548979,186,46,0.195559872313493,0.0609320191721897,0.134627853141303,289.090812953605,"CHH","9:13548175:13550176","CGI_shore"]
[9,13579850,13580126,277,75,0.597282769228071,0.403698807824999,0.193583961403072,354.440269729083,"CHH","9:13574642:13580622","CGI"]
[9,13579850,13580126,277,75,0.597282769228071,0.403698807824999,0.193583961403072,354.440269729083,"CHH","Os09g0392700","promoter","Os09g0392700","Hypothetical conserved gene && sp|Q6K9X3|NAMT1_ORYSJ Nicotinate N-methyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NANMT1 PE=1 SV=1 && -"]
[9,13599631,13599801,171,78,0.329532820302865,0.127165664688243,0.202367155614622,524.674841004559,"CHH","9:13599098:13599638","CGI"]
[9,13599631,13599801,171,78,0.329532820302865,0.127165664688243,0.202367155614622,524.674841004559,"CHH","9:13599638:13601639","CGI_shore"]
[9,13599631,13599801,171,78,0.329532820302865,0.127165664688243,0.202367155614622,524.674841004559,"CHH","Os09g0393200","intron","Jumonji 718","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 && PF02373:JmjC domain, hydroxylase"]
[9,13601349,13601508,160,37,0.211240190868184,0.0952477389682832,0.115992451899901,200.763371730456,"CHH","9:13599638:13601639","CGI_shore"]
[9,13601349,13601508,160,37,0.211240190868184,0.0952477389682832,0.115992451899901,200.763371730456,"CHH","9:13600170:13602170","CGI_shore"]
[9,13601349,13601508,160,37,0.211240190868184,0.0952477389682832,0.115992451899901,200.763371730456,"CHH","Os09g0393200","intron","Jumonji 718","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 && PF02373:JmjC domain, hydroxylase"]
[9,13601722,13601897,176,58,0.251686070816177,0.044656881540289,0.207029189275888,307.468789781523,"CHH","9:13600170:13602170","CGI_shore"]
[9,13601722,13601897,176,58,0.251686070816177,0.044656881540289,0.207029189275888,307.468789781523,"CHH","Os09g0393200","exon","Jumonji 718","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 && PF02373:JmjC domain, hydroxylase"]
[9,13601722,13601897,176,58,0.251686070816177,0.044656881540289,0.207029189275888,307.468789781523,"CHH","Os09g0393200","utr3","Jumonji 718","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 && PF02373:JmjC domain, hydroxylase"]
[9,13601722,13601897,176,58,0.251686070816177,0.044656881540289,0.207029189275888,307.468789781523,"CHH","Os09g0393200","TES","Jumonji 718","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 && PF02373:JmjC domain, hydroxylase"]
[9,13601722,13601897,176,58,0.251686070816177,0.044656881540289,0.207029189275888,307.468789781523,"CHH","Os09g0393200","intron","Jumonji 718","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 && PF02373:JmjC domain, hydroxylase"]
[9,13602218,13602298,81,26,0.0677075888904842,0.0181581354423535,0.0495494534481308,105.510489900944,"CHH","9:13602171:13602871","CGI"]
[9,13609324,13609515,192,74,0.182431721022447,0.0608178044680683,0.121613916554378,339.032973252006,"CHH","9:13606671:13609840","CGI"]
[9,13621208,13621527,320,107,0.196223862742923,0.0882234219982059,0.108000440744718,610.139779360829,"CHH","9:13620827:13622828","CGI_shore"]
[9,13621208,13621527,320,107,0.196223862742923,0.0882234219982059,0.108000440744718,610.139779360829,"CHH","Os09g0393801","promoter","Os09g0393801","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && -"]
[9,13622006,13622195,190,98,0.0884916117654863,0.026548581425686,0.0619430303398003,505.318454734328,"CHH","9:13620827:13622828","CGI_shore"]
[9,13622006,13622195,190,98,0.0884916117654863,0.026548581425686,0.0619430303398003,505.318454734328,"CHH","Os09g0393801","promoter","Os09g0393801","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && -"]
[9,13622987,13623174,188,65,0.0798701795980994,0.025037460112836,0.0548327194852634,341.468955735286,"CHH","Os09g0393801","promoter","Os09g0393801","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && -"]
[9,13622987,13623174,188,65,0.0798701795980994,0.025037460112836,0.0548327194852634,341.468955735286,"CHH","Os09g0393501","intron","Os09g0393501","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && PF08282:haloacid dehalogenase-like hydrolase"]
[9,13622987,13623174,188,65,0.0798701795980994,0.025037460112836,0.0548327194852634,341.468955735286,"CHH","Os09g0393801","TSS","Os09g0393801","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && -"]
[9,13622987,13623174,188,65,0.0798701795980994,0.025037460112836,0.0548327194852634,341.468955735286,"CHH","Os09g0393801","exon","Os09g0393801","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && -"]
[9,13623653,13623935,283,121,0.0833898987013616,0.0172767407904344,0.0661131579109271,725.109554378034,"CHH","Os09g0393501","intron","Os09g0393501","Similar to haloacid dehalogenase-like hydrolase family protein && sp|Q8L5Z4|YBEY_ARATH Endoribonuclease YBEY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YBEY PE=1 SV=1 && PF08282:haloacid dehalogenase-like hydrolase"]
[9,13631443,13631569,127,36,0.104643606032287,0.0183320002647043,0.0863116057675828,179.484818663797,"CHH","Os09g0394100","promoter","Os09g0394100","Malonyl-CoA decarboxylase family protein && sp|P12617|DCMC_ANSAN Malonyl-CoA decarboxylase, mitochondrial OS=Anser anser anser OX=8844 GN=MLYCD PE=1 SV=2 && PF05292:Malonyl-CoA decarboxylase C-terminal domain|PF17408:Malonyl-CoA decarboxylase N-terminal domain"]
[9,13631443,13631569,127,36,0.104643606032287,0.0183320002647043,0.0863116057675828,179.484818663797,"CHH","9:13629850:13631851","CGI_shore"]
[9,13631443,13631569,127,36,0.104643606032287,0.0183320002647043,0.0863116057675828,179.484818663797,"CHH","9:13630040:13632040","CGI_shore"]
[9,13631443,13631569,127,36,0.104643606032287,0.0183320002647043,0.0863116057675828,179.484818663797,"CHH","9:13631438:13633438","CGI_shore"]
[9,13661614,13661777,164,73,0.178131148486728,0.0506131240877035,0.127518024399024,373.675815986116,"CHH","9:13659783:13661783","CGI_shore"]
[9,13757617,13757963,347,119,0.25560792181549,0.12512158754209,0.1304863342734,605.939057405231,"CHH","9:13755904:13757904","CGI_shore"]
[9,13757617,13757963,347,119,0.25560792181549,0.12512158754209,0.1304863342734,605.939057405231,"CHH","9:13757199:13759199","CGI_shore"]
[9,13757617,13757963,347,119,0.25560792181549,0.12512158754209,0.1304863342734,605.939057405231,"CHH","Os09g0395300","promoter","ROLLED LEAF 9","GARP DNA-binding protien, Leaf polarity modelin && sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2 && -"]
[9,13757617,13757963,347,119,0.25560792181549,0.12512158754209,0.1304863342734,605.939057405231,"CHH","9:13757905:13758490","CGI"]
[9,13835245,13835472,228,56,0.268875542757927,0.0718843730481561,0.196991169709771,259.041498370465,"CHH","9:13833351:13835352","CGI_shore"]
[9,13835245,13835472,228,56,0.268875542757927,0.0718843730481561,0.196991169709771,259.041498370465,"CHH","9:13834509:13836509","CGI_shore"]
[9,13835245,13835472,228,56,0.268875542757927,0.0718843730481561,0.196991169709771,259.041498370465,"CHH","9:13834691:13835860","CGI"]
[9,13844935,13845050,116,15,0.186048139569939,0.033686462442332,0.152361677127607,97.7027113180566,"CHH","9:13844250:13845848","CGI"]
[9,13865882,13866194,313,91,0.261619785806517,0.107537154673984,0.154082631132533,513.941866389627,"CHH","9:13865615:13867615","CGI_shore"]
[9,13871207,13871295,89,4,0.743642296575418,0.32163908024369,0.422003216331728,20.8069168912357,"CG","9:13870471:13872471","CGI_shore"]
[9,13871586,13871735,150,44,0.380880018425988,0.253168667227571,0.127711351198417,188.154938324705,"CHH","9:13870471:13872471","CGI_shore"]
[9,13899558,13899804,247,56,0.297397290954554,0.151751367951501,0.145645923003053,306.574317196921,"CHH","9:13899331:13901332","CGI_shore"]
[9,14079105,14079191,87,22,0.191810071011706,0.0908472371372988,0.100962833874408,107.221198369524,"CHH","9:14078318:14080319","CGI_shore"]
[9,14079105,14079191,87,22,0.191810071011706,0.0908472371372988,0.100962833874408,107.221198369524,"CHH","9:14078321:14080321","CGI_shore"]
[9,14283357,14283481,125,16,0.264294688834766,0.0102361764190945,0.254058512415671,86.813431584502,"CHH","Os09g0405001","promoter","Os09g0405001","Similar to Uncharacterized protein OsI_031781 && sp|A2Z5D8|Y1781_ORYSI Uncharacterized protein OsI_031781 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_031781 PE=1 SV=1 && -"]
[9,14350328,14350494,167,55,0.127123724935616,0.0499039005738057,0.0772198243618106,292.882947376838,"CHH","9:14349055:14351055","CGI_shore"]
[9,14350328,14350494,167,55,0.127123724935616,0.0499039005738057,0.0772198243618106,292.882947376838,"CHH","9:14349153:14351154","CGI_shore"]
[9,14350328,14350494,167,55,0.127123724935616,0.0499039005738057,0.0772198243618106,292.882947376838,"CHH","Os09g0406900","promoter","Os09g0406900","Hypothetical protein && - && -"]
[9,14362423,14362522,100,22,0.452274959768996,0.282460148373626,0.16981481139537,105.722248072376,"CHH","9:14360611:14362611","CGI_shore"]
[9,14362423,14362522,100,22,0.452274959768996,0.282460148373626,0.16981481139537,105.722248072376,"CHH","Os09g0407200","promoter","DNA REPAIR PROTEIN RAD23","Similar to RAD23, isoform I && sp|Q40742|RAD23_ORYSJ Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 && PF00627:UBA/TS-N domain|PF00240:Ubiquitin family|PF09280:XPC-binding domain"]
[9,14362423,14362522,100,22,0.452274959768996,0.282460148373626,0.16981481139537,105.722248072376,"CHH","9:14361528:14363529","CGI_shore"]
[9,14393158,14393289,132,33,0.222758051466007,0.117632168181033,0.105125883284974,150.479096303221,"CHH","Os09g0407800","promoter","Os09g0407800","Pentatricopeptide repeat domain containing protein && sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1 && PF13041:PPR repeat family|PF01535:PPR repeat"]
[9,14393158,14393289,132,33,0.222758051466007,0.117632168181033,0.105125883284974,150.479096303221,"CHH","9:14393069:14395070","CGI_shore"]
[9,14401329,14401496,168,67,0.100489022424929,0.0452214020520754,0.0552676203728539,312.027142234718,"CHH","Os09g0407900","promoter","Os09g0407900","Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein && sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus OX=10090 GN=Usp39 PE=1 SV=2 && PF00443:Ubiquitin carboxyl-terminal hydrolase|PF02148:Zn-finger in ubiquitin-hydrolases and other protein"]
[9,14401329,14401496,168,67,0.100489022424929,0.0452214020520754,0.0552676203728539,312.027142234718,"CHH","9:14399506:14401507","CGI_shore"]
[9,14441496,14441549,54,19,0.0882967494423691,0.0299667173886387,0.0583300320537304,82.2779115387387,"CHH","9:14441130:14442042","CGI"]
[9,14457957,14458091,135,31,0.314788842407267,0.181939624774927,0.13284921763234,153.93976474572,"CHH","Os09g0408600","promoter","Os09g0408600","Similar to Dihydrolipoamide S-acetyltransferase (EC 2.3.1.12) && sp|Q9SQI8|ODP24_ARATH Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LTA2 PE=2 SV=1 && PF02817:e3 binding domain|PF00364:Biotin-requiring enzyme|PF00198:2-oxoacid dehydrogenases acyltransferase (catalytic domain)"]
[9,14457957,14458091,135,31,0.314788842407267,0.181939624774927,0.13284921763234,153.93976474572,"CHH","9:14457801:14459802","CGI_shore"]
[9,14466756,14467028,273,66,0.650489598907627,0.469089387393556,0.181400211514072,360.373485636544,"CHH","Os09g0408933","intron","Os09g0408933","Hypothetical protein && sp|O65472|CRK12_ARATH Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=CRK12 PE=3 SV=3 && PF07714:Protein tyrosine kinase"]
[9,14466756,14467028,273,66,0.650489598907627,0.469089387393556,0.181400211514072,360.373485636544,"CHH","Os09g0408900","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 270","Similar to kinase family protein && sp|Q9LDQ3|CRK35_ARATH Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana OX=3702 GN=CRK35 PE=3 SV=3 && -"]
[9,14466756,14467028,273,66,0.650489598907627,0.469089387393556,0.181400211514072,360.373485636544,"CHH","9:14465124:14467124","CGI_shore"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","Os09g0408933","promoter","Os09g0408933","Hypothetical protein && sp|O65472|CRK12_ARATH Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=CRK12 PE=3 SV=3 && PF07714:Protein tyrosine kinase"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","9:14469109:14471110","CGI_shore"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","Os09g0408966","promoter","Os09g0408966","Hypothetical protein && sp|Q9LDQ3|CRK35_ARATH Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana OX=3702 GN=CRK35 PE=3 SV=3 && -"]
[9,14469931,14470033,103,27,0.141337009593512,0.038563138790616,0.102773870802896,155.435270420675,"CHH","9:14469353:14471353","CGI_shore"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","9:14469109:14471110","CGI_shore"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","Os09g0408966","promoter","Os09g0408966","Hypothetical protein && sp|Q9LDQ3|CRK35_ARATH Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana OX=3702 GN=CRK35 PE=3 SV=3 && -"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","9:14469353:14471353","CGI_shore"]
[9,14470882,14471004,123,33,0.415754061504671,0.247739692725759,0.168014368778912,139.151192039413,"CHH","Target=(CAGCT)n:1-201;Class=Simple_repeat","repeat"]
[9,14474086,14474352,267,80,0.602830090950548,0.331201163000895,0.271628927949653,433.596864370395,"CHH","9:14473962:14475963","CGI_shore"]
[9,14474086,14474352,267,80,0.602830090950548,0.331201163000895,0.271628927949653,433.596864370395,"CHH","Os09g0409000","promoter","Thionin 32","Conserved hypothetical protein && - && -"]
[9,14524554,14524622,69,14,0.0790858544182753,0.0158504218998773,0.063235432518398,83.3898634709642,"CHH","9:14523377:14525377","CGI_shore"]
[9,14548947,14549046,100,32,0.216393295358412,0.0702804966225337,0.146112798735879,188.405250684338,"CHH","9:14547218:14549218","CGI_shore"]
[9,14578867,14578942,76,19,0.173338977621463,0.0324080991466145,0.140930878474849,92.9232926385479,"CHH","9:14577639:14579639","CGI_shore"]
[9,14578867,14578942,76,19,0.173338977621463,0.0324080991466145,0.140930878474849,92.9232926385479,"CHH","9:14578656:14580657","CGI_shore"]
[9,14578867,14578942,76,19,0.173338977621463,0.0324080991466145,0.140930878474849,92.9232926385479,"CHH","9:14578678:14580678","CGI_shore"]
[9,14582977,14583049,73,8,0.503255956997232,0.247672498573024,0.255583458424208,37.6684576769427,"CHG","9:14581872:14583872","CGI_shore"]
[9,14582977,14583049,73,8,0.503255956997232,0.247672498573024,0.255583458424208,37.6684576769427,"CHG","9:14582663:14583094","CGI"]
[9,14582977,14583049,73,8,0.503255956997232,0.247672498573024,0.255583458424208,37.6684576769427,"CHG","9:14581295:14583296","CGI_shore"]
[9,14610050,14610177,128,19,0.234595118369217,0.0718417031032308,0.162753415265986,106.663264860312,"CHH","Os09g0411650","promoter","SET protein 36","Similar to Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose- bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisco LSMT) (rbcMT) && sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RBCMT PE=2 SV=1 && PF00856:SET domain|PF09273:Rubisco LSMT substrate-binding"]
[9,14610050,14610177,128,19,0.234595118369217,0.0718417031032308,0.162753415265986,106.663264860312,"CHH","9:14609888:14611889","CGI_shore"]
[9,14641869,14641934,66,15,0.424758970814416,0.262723879334916,0.1620350914795,71.6049765015503,"CHH","9:14641527:14643528","CGI_shore"]
[9,14641869,14641934,66,15,0.424758970814416,0.262723879334916,0.1620350914795,71.6049765015503,"CHH","9:14641877:14643877","CGI_shore"]
[9,14669626,14669806,181,64,0.176997742773596,0.047475154455764,0.129522588317832,364.712391483642,"CHH","9:14669182:14671183","CGI_shore"]
[9,14742412,14742464,53,17,0.0954282756195897,0.045145217522622,0.0502830580969676,82.6952081389723,"CHH","9:14732830:14766854","CGI"]
[9,14877306,14877436,131,39,0.141578227444273,0.0562022724955339,0.0853759549487386,204.288667890895,"CHH","9:14875802:14877802","CGI_shore"]
[9,14877306,14877436,131,39,0.141578227444273,0.0562022724955339,0.0853759549487386,204.288667890895,"CHH","Os09g0415800","intron","phosphofructokinase 8","Phosphofructokinase family protein && sp|Q8VYN6|PFKA5_ARATH ATP-dependent 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PFK5 PE=1 SV=1 && PF00365:Phosphofructokinase"]
[9,14921119,14921267,149,36,0.228244276964329,0.0423798640422967,0.185864412922032,191.702682910585,"CHH","9:14920924:14922925","CGI_shore"]
[9,14922933,14923120,188,40,0.293118701359356,0.0865729912742391,0.206545710085117,211.167831444518,"CHH","Os09g0416700","intron","Os09g0416700","Vesicle transport v-SNARE family protein && sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana OX=3702 GN=GOS11 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus"]
[9,14990229,14990375,147,36,0.217637948614172,0.0764279458390121,0.14121000277516,202.157131485441,"CHH","9:14988648:14990648","CGI_shore"]
[9,14990229,14990375,147,36,0.217637948614172,0.0764279458390121,0.14121000277516,202.157131485441,"CHH","9:14989906:14991907","CGI_shore"]
[9,14991950,14992011,62,21,0.122424715562858,0.0457064151717577,0.0767183003910999,99.8035395159527,"CHH","9:14990858:14992859","CGI_shore"]
[9,14991950,14992011,62,21,0.122424715562858,0.0457064151717577,0.0767183003910999,99.8035395159527,"CHH","9:14991090:14993090","CGI_shore"]
[9,15003502,15003605,104,29,0.342958746369616,0.209544295292787,0.133414451076828,132.519885032107,"CHH","9:15001806:15004366","CGI"]
[9,15045850,15045943,94,28,0.219818732434775,0.0988637252186343,0.12095500721614,155.816465350104,"CHH","Os09g0418800","intron","Os09g0418800","Hypothetical gene && sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2 && -"]
[9,15045850,15045943,94,28,0.219818732434775,0.0988637252186343,0.12095500721614,155.816465350104,"CHH","Os09g0418700","promoter","Os09g0418700","Similar to R111 && - && -"]
[9,15045850,15045943,94,28,0.219818732434775,0.0988637252186343,0.12095500721614,155.816465350104,"CHH","9:15024620:15047571","CGI"]
[9,15048994,15049072,79,15,0.186893286619872,0.0884787428821462,0.0984145437377259,70.6960957052429,"CHH","Os09g0418800","promoter","Os09g0418800","Hypothetical gene && sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2 && -"]
[9,15048994,15049072,79,15,0.186893286619872,0.0884787428821462,0.0984145437377259,70.6960957052429,"CHH","9:15047571:15049572","CGI_shore"]
[9,15056417,15056585,169,47,0.895861507862653,0.762056738207274,0.133804769655379,190.837781136409,"CG","9:15054852:15056853","CGI_shore"]
[9,15056417,15056585,169,47,0.895861507862653,0.762056738207274,0.133804769655379,190.837781136409,"CG","9:15056296:15059954","CGI"]
[9,15060766,15060999,234,50,0.201657856488055,0.0375072245485315,0.164150631939523,359.030346021081,"CHH","9:15059954:15061955","CGI_shore"]
[9,15061801,15061889,89,28,0.404148166025761,0.261274493973591,0.142873672052169,135.123794925996,"CHH","9:15059954:15061955","CGI_shore"]
[9,15064391,15064499,109,25,0.253674512167211,0.130877691587878,0.122796820579333,115.601795895353,"CHH","9:15063146:15065146","CGI_shore"]
[9,15064391,15064499,109,25,0.253674512167211,0.130877691587878,0.122796820579333,115.601795895353,"CHH","Os09g0419100","promoter","Os09g0419100","Hypothetical protein && - && -"]
[9,15072724,15072896,173,47,0.16789712121611,0.051145045772619,0.116752075443491,269.498172662129,"CHH","9:15071255:15073255","CGI_shore"]
[9,15080456,15080599,144,28,0.46575112307105,0.316090873519902,0.149660249551148,127.983103424383,"CHH","Os09g0419200","promoter","cinnamoyl CoA reductase 19","NAD(P)-binding domain containing protein && sp|A0A059TC02|CCR1_PETHY Cinnamoyl-CoA reductase 1 OS=Petunia hybrida OX=4102 GN=CCR1 PE=1 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[9,15124984,15125177,194,72,0.229181151634285,0.0412935533081956,0.187887598326089,454.370699707881,"CHH","9:15124276:15126277","CGI_shore"]
[9,15124984,15125177,194,72,0.229181151634285,0.0412935533081956,0.187887598326089,454.370699707881,"CHH","9:15124304:15126304","CGI_shore"]
[9,15124984,15125177,194,72,0.229181151634285,0.0412935533081956,0.187887598326089,454.370699707881,"CHH","Os09g0420100","promoter","Os09g0420100","Zinc finger, C6HC-type domain containing protein && sp|Q6DH94|R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1 && PF01485:IBR domain, a half RING-finger domain"]
[9,15125228,15125339,112,41,0.210691372800901,0.0710210654541522,0.139670307346749,235.607673636009,"CHH","9:15124276:15126277","CGI_shore"]
[9,15125228,15125339,112,41,0.210691372800901,0.0710210654541522,0.139670307346749,235.607673636009,"CHH","9:15124304:15126304","CGI_shore"]
[9,15125228,15125339,112,41,0.210691372800901,0.0710210654541522,0.139670307346749,235.607673636009,"CHH","Os09g0420100","promoter","Os09g0420100","Zinc finger, C6HC-type domain containing protein && sp|Q6DH94|R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1 && PF01485:IBR domain, a half RING-finger domain"]
[9,15130367,15130441,75,18,0.253352320281414,0.0902110421612091,0.163141278120205,86.4157959824528,"CHH","9:15129743:15131743","CGI_shore"]
[9,15130367,15130441,75,18,0.253352320281414,0.0902110421612091,0.163141278120205,86.4157959824528,"CHH","Os09g0420200","intron","Os09g0420200","Conserved hypothetical protein && - && -"]
[9,15130367,15130441,75,18,0.253352320281414,0.0902110421612091,0.163141278120205,86.4157959824528,"CHH","9:15130361:15132362","CGI_shore"]
[9,15197506,15197686,181,76,0.196342970646298,0.0484480620299891,0.147894908616309,415.658895418678,"CHH","9:15195523:15197523","CGI_shore"]
[9,15197506,15197686,181,76,0.196342970646298,0.0484480620299891,0.147894908616309,415.658895418678,"CHH","9:15197524:15199282","CGI"]
[9,15222001,15222300,300,70,0.167043346921696,0.0450348842663543,0.122008462655342,377.161014350618,"CHH","9:15221360:15225383","CGI"]
[9,15225546,15225648,103,22,0.491737963601322,0.263886827273803,0.227851136327519,129.717800018674,"CHH","Os09g0421300","intron","PHOSPHOLIPASE D alpha 8","Phospholipase D lambda && sp|Q38882|PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana OX=3702 GN=PLDALPHA1 PE=1 SV=2 && PF12357:Phospholipase D C terminal|PF00168:C2 domain|PF13091:PLD-like domain|PF00614:Phospholipase D Active site motif"]
[9,15225546,15225648,103,22,0.491737963601322,0.263886827273803,0.227851136327519,129.717800018674,"CHH","9:15225383:15227384","CGI_shore"]
[9,15263247,15263403,157,27,0.160328850689159,0.013310808589571,0.147018042099588,157.219013398247,"CHH","9:15261745:15263745","CGI_shore"]
[9,15263247,15263403,157,27,0.160328850689159,0.013310808589571,0.147018042099588,157.219013398247,"CHH","9:15262422:15264423","CGI_shore"]
[9,15319265,15319369,105,31,0.204497050054461,0.0958285009807837,0.108668549073677,139.994047076306,"CHH","Os09g0423200","promoter","Os09g0423200","Protein kinase, catalytic domain domain containing protein && sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana OX=3702 GN=At2g24130 PE=3 SV=1 && PF00069:Protein kinase domain|PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain"]
[9,15319265,15319369,105,31,0.204497050054461,0.0958285009807837,0.108668549073677,139.994047076306,"CHH","9:15318682:15323809","CGI"]
[9,15327032,15327098,67,22,0.123994506635469,0.0658150752848294,0.0581794313506399,109.08585134256,"CHH","9:15325436:15327436","CGI_shore"]
[9,15327032,15327098,67,22,0.123994506635469,0.0658150752848294,0.0581794313506399,109.08585134256,"CHH","Os09g0423300","promoter","Os09g0423300","Pentatricopeptide repeat domain containing protein && sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g30825 PE=2 SV=2 && PF13041:PPR repeat family"]
[9,15327032,15327098,67,22,0.123994506635469,0.0658150752848294,0.0581794313506399,109.08585134256,"CHH","9:15326866:15328866","CGI_shore"]
[9,15353221,15353385,165,24,0.107569121583015,0.0282278206576111,0.0793413009254037,150.768120032735,"CHH","Os09g0423600","intron","MGD1","Similar to Monogalactosyldiacylglycerol synthase (EC 2.4.1.46) && sp|Q69QJ7|MGDG1_ORYSJ Probable monogalactosyldiacylglycerol synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MGD1 PE=2 SV=1 && PF04101:Glycosyltransferase family 28 C-terminal domain|PF06925:Monogalactosyldiacylglycerol (MGDG) synthase"]
[9,15353221,15353385,165,24,0.107569121583015,0.0282278206576111,0.0793413009254037,150.768120032735,"CHH","9:15352996:15354996","CGI_shore"]
[9,15382653,15382850,198,53,0.292573325202713,0.130848267638083,0.16172505756463,296.451400619831,"CHH","9:15381850:15382702","CGI"]
[9,15382653,15382850,198,53,0.292573325202713,0.130848267638083,0.16172505756463,296.451400619831,"CHH","Os09g0424200","intron","Os09g0424200","Glutamine amidotransferase class-I domain containing protein && sp|Q9M0A5|GGP3_ARATH Gamma-glutamyl peptidase 3 OS=Arabidopsis thaliana OX=3702 GN=GGP3 PE=1 SV=1 && PF00117:Glutamine amidotransferase class-I"]
[9,15382653,15382850,198,53,0.292573325202713,0.130848267638083,0.16172505756463,296.451400619831,"CHH","9:15382702:15384703","CGI_shore"]
[9,15428496,15428678,183,38,0.145894057147666,0.0502320969067916,0.0956619602408747,181.917079863364,"CHH","9:15427938:15429939","CGI_shore"]
[9,15428496,15428678,183,38,0.145894057147666,0.0502320969067916,0.0956619602408747,181.917079863364,"CHH","9:15428044:15430044","CGI_shore"]
[9,15434926,15435050,125,30,0.179412963834728,0.0354973505832846,0.143915613251443,137.089324812249,"CHH","9:15431895:15439979","CGI"]
[9,15436356,15436513,158,43,0.325074687457039,0.179744649849295,0.145330037607744,249.26077893546,"CHH","Os09g0425700","promoter","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15436356,15436513,158,43,0.325074687457039,0.179744649849295,0.145330037607744,249.26077893546,"CHH","9:15431895:15439979","CGI"]
[9,15437417,15437579,163,47,0.359860950020171,0.207494373401839,0.152366576618332,244.952342714212,"CHH","Os09g0425700","promoter","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15437417,15437579,163,47,0.359860950020171,0.207494373401839,0.152366576618332,244.952342714212,"CHH","9:15431895:15439979","CGI"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425700","exon","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","9:15439798:15441798","CGI_shore"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425800","promoter","Os09g0425800","Hypothetical protein && - && -"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","9:15439979:15441980","CGI_shore"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425700","utr3","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15440233,15440392,160,35,0.362674529165586,0.159484683987658,0.203189845177928,221.016176278951,"CHH","Os09g0425700","TES","Os09g0425700","Similar to Glycylpeptide N-tetradecanoyltransferase && sp|Q9LTR9|NMT1_ARATH Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2 && -"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","9:15439798:15441798","CGI_shore"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","Os09g0425800","promoter","Os09g0425800","Hypothetical protein && - && -"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","9:15439979:15441980","CGI_shore"]
[9,15440840,15440933,94,16,0.244176266099136,0.105098305541286,0.13907796055785,87.060141718409,"CHH","9:15440864:15442864","CGI_shore"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","9:15439798:15441798","CGI_shore"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","Os09g0425800","promoter","Os09g0425800","Hypothetical protein && - && -"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","9:15439979:15441980","CGI_shore"]
[9,15441045,15441196,152,45,0.296551153697849,0.135426597811645,0.161124555886204,213.434394284556,"CHH","9:15440864:15442864","CGI_shore"]
[9,15549665,15549827,163,43,0.530985141478328,0.309418657114757,0.221566484363571,218.516063233366,"CHH","Os09g0428000","promoter","CELLULOSE SYNTHASE LIKE C2","Glycosyl transferase, family 2 domain containing protein && sp|Q69L19|CSLC2_ORYSJ Probable xyloglucan glycosyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLC2 PE=2 SV=2 && PF13641:Glycosyltransferase like family 2"]
[9,15549665,15549827,163,43,0.530985141478328,0.309418657114757,0.221566484363571,218.516063233366,"CHH","9:15549515:15551516","CGI_shore"]
[9,15554931,15555125,195,53,0.233905156136222,0.115973404917135,0.117931751219087,302.437907288772,"CHH","9:15553759:15555759","CGI_shore"]
[9,15674059,15674159,101,25,0.24101703770794,0.012346451325505,0.228670586382435,133.984136364757,"CHH","9:15673364:15675364","CGI_shore"]
[9,15704682,15704747,66,23,0.108412531411514,0.0554076570151653,0.0530048743963488,96.2858930010034,"CHH","9:15702997:15704998","CGI_shore"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","Os09g0431050","intron","Os09g0431050","Hypothetical gene && sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana OX=3702 GN=GLR2.7 PE=2 SV=3 && PF01094:Receptor family ligand binding region"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","Os09g0431100","exon","Glutamate receptor homolog 1.3, GLUTAMATE RECEPTOR-LIKE 1.1","GPCR, family 3, metabotropic glutamate receptor-like protein && sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2 && PF00497:Bacterial extracellular solute-binding proteins, family 3|PF00060:Ligand-gated ion channel|PF01094:Receptor family ligand binding region"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","Os09g0431100","intron","Glutamate receptor homolog 1.3, GLUTAMATE RECEPTOR-LIKE 1.1","GPCR, family 3, metabotropic glutamate receptor-like protein && sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana OX=3702 GN=GLR2.8 PE=2 SV=2 && PF00497:Bacterial extracellular solute-binding proteins, family 3|PF00060:Ligand-gated ion channel|PF01094:Receptor family ligand binding region"]
[9,15753236,15753296,61,32,0.193764120438166,0.0665196875877357,0.12724443285043,129.345644004804,"CG","9:15726614:15754633","CGI"]
[9,15866930,15867064,135,34,0.200134041097134,0.0313296312177464,0.168804409879388,193.008053507003,"CHH","9:15857437:15870015","CGI"]
[9,15873668,15873739,72,26,0.424288737985847,0.221235396811626,0.203053341174222,129.751719356101,"CHH","9:15872358:15874358","CGI_shore"]
[9,15877519,15877944,426,130,0.224522791745128,0.0931791409866543,0.131343650758473,735.253463211393,"CHH","9:15876479:15878480","CGI_shore"]
[9,15882422,15882646,225,51,0.433478576100183,0.109862831304658,0.323615744795524,374.11029149196,"CHH","9:15880835:15882836","CGI_shore"]
[9,15931512,15931586,75,26,0.137659444839035,0.0348215664284149,0.10283787841062,160.231088831649,"CHH","9:15930709:15932710","CGI_shore"]
[9,15931512,15931586,75,26,0.137659444839035,0.0348215664284149,0.10283787841062,160.231088831649,"CHH","Os09g0433900","intron","ALANINE AMINOTRANSFERASE 5","Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) && sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum OX=4540 PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[9,15931823,15931974,152,41,0.309891321833122,0.0872778586615998,0.222613463171522,170.101653592758,"CHH","9:15930709:15932710","CGI_shore"]
[9,15931823,15931974,152,41,0.309891321833122,0.0872778586615998,0.222613463171522,170.101653592758,"CHH","Os09g0433900","intron","ALANINE AMINOTRANSFERASE 5","Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) && sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum OX=4540 PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[9,15964352,15964421,70,21,0.0847851401311233,0.00478641785424373,0.0799987222768796,116.323352893691,"CHH","9:15962855:15964855","CGI_shore"]
[9,16104536,16104608,73,29,0.0844183589368554,0.0302062569225979,0.0542121020142575,123.712874636619,"CHH","9:16103492:16105493","CGI_shore"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438000","promoter","RESPIRATORY BURST OXIDASE HOMOLOG G","Similar to RbohAOsp (Fragment) && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08022:FAD-binding domain|PF08414:Respiratory burst NADPH oxidase|PF08030:Ferric reductase NAD binding domain|PF01794:Ferric reductase like transmembrane component"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438000","exon","RESPIRATORY BURST OXIDASE HOMOLOG G","Similar to RbohAOsp (Fragment) && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08022:FAD-binding domain|PF08414:Respiratory burst NADPH oxidase|PF08030:Ferric reductase NAD binding domain|PF01794:Ferric reductase like transmembrane component"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438000","utr5","RESPIRATORY BURST OXIDASE HOMOLOG G","Similar to RbohAOsp (Fragment) && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08022:FAD-binding domain|PF08414:Respiratory burst NADPH oxidase|PF08030:Ferric reductase NAD binding domain|PF01794:Ferric reductase like transmembrane component"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","9:16185910:16188589","CGI"]
[9,16186727,16186835,109,32,0.109872248488842,0.03641408201443,0.0734581664744123,156.310495057665,"CG","Os09g0438050","exon","Os09g0438050","Hypothetical protein && sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana OX=3702 GN=RBOHE PE=2 SV=2 && PF08414:Respiratory burst NADPH oxidase"]
[9,16238524,16238598,75,14,0.0935511927048983,0.0352680515264984,0.0582831411783999,70.7918000158221,"CHH","Os09g0438700","intron","Os09g0438700","Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20) && sp|O65282|CH20_ARATH 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2 && PF00166:Chaperonin 10 Kd subunit"]
[9,16238524,16238598,75,14,0.0935511927048983,0.0352680515264984,0.0582831411783999,70.7918000158221,"CHH","9:16238370:16240370","CGI_shore"]
[9,16280133,16280313,181,78,0.252004777705327,0.171962551578471,0.0800422261268564,292.585037175223,"CHH","9:16278965:16280966","CGI_shore"]
[9,16280133,16280313,181,78,0.252004777705327,0.171962551578471,0.0800422261268564,292.585037175223,"CHH","9:16279347:16281347","CGI_shore"]
[9,16300075,16300247,173,49,0.470891081650383,0.275512469709725,0.195378611940658,255.253165601512,"CHH","9:16299863:16301864","CGI_shore"]
[9,16305072,16305173,102,28,0.0981685166229364,0.0214923729842978,0.0766761436386386,157.980378215109,"CHH","9:16304294:16306294","CGI_shore"]
[9,16305072,16305173,102,28,0.0981685166229364,0.0214923729842978,0.0766761436386386,157.980378215109,"CHH","Os09g0439700","promoter","Os09g0439700","Transmembrane receptor, eukaryota domain containing protein && sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis OX=8364 GN=tmem87a PE=2 SV=1 && PF06814:Lung seven transmembrane receptor"]
[9,16305072,16305173,102,28,0.0981685166229364,0.0214923729842978,0.0766761436386386,157.980378215109,"CHH","9:16304912:16306913","CGI_shore"]
[9,16305859,16306116,258,48,0.456461081362142,0.194986438077153,0.261474643284989,261.526276999556,"CHH","9:16304294:16306294","CGI_shore"]
[9,16305859,16306116,258,48,0.456461081362142,0.194986438077153,0.261474643284989,261.526276999556,"CHH","Os09g0439700","promoter","Os09g0439700","Transmembrane receptor, eukaryota domain containing protein && sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis OX=8364 GN=tmem87a PE=2 SV=1 && PF06814:Lung seven transmembrane receptor"]
[9,16305859,16306116,258,48,0.456461081362142,0.194986438077153,0.261474643284989,261.526276999556,"CHH","9:16304912:16306913","CGI_shore"]
[9,16314089,16314187,99,34,0.206888045853922,0.0247343141433132,0.182153731710608,222.986789803793,"CHH","9:16312743:16314743","CGI_shore"]
[9,16314089,16314187,99,34,0.206888045853922,0.0247343141433132,0.182153731710608,222.986789803793,"CHH","9:16313553:16315554","CGI_shore"]
[9,16314089,16314187,99,34,0.206888045853922,0.0247343141433132,0.182153731710608,222.986789803793,"CHH","9:16313878:16315878","CGI_shore"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","9:16340969:16342970","CGI_shore"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","Os09g0440600","promoter","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","9:16341892:16343893","CGI_shore"]
[9,16342779,16342939,161,44,0.35734095206434,0.182984044619272,0.174356907445068,269.321248880208,"CHH","9:16342739:16347648","CGI"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","Os09g0440600","promoter","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","9:16341892:16343893","CGI_shore"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","9:16342739:16347648","CGI"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","Os09g0440600","TSS","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16343642,16343863,222,76,0.173096407535761,5.67168904312303E-3,0.167424718492638,513.944265615918,"CHH","Os09g0440600","exon","Os09g0440600","Conserved hypothetical protein && sp|Q6AUK6|MTEF4_ORYSJ Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1 && -"]
[9,16359980,16360143,164,54,0.0721409502247902,0.0202443181188841,0.0518966321059061,242.85618769961,"CHH","9:16355744:16363176","CGI"]
[9,16359980,16360143,164,54,0.0721409502247902,0.0202443181188841,0.0518966321059061,242.85618769961,"CHH","Os09g0441250","promoter","Os09g0441250","Conserved hypothetical protein && sp|A0A1D6F9Y9|C92C6_MAIZE Trimethyltridecatetraene synthase OS=Zea mays OX=4577 GN=CYP92C6 PE=1 SV=1 && -"]
[9,16361199,16361287,89,27,0.131430087849895,0.0454810608140384,0.0859490270358564,141.441333288116,"CHH","9:16355744:16363176","CGI"]
[9,16361199,16361287,89,27,0.131430087849895,0.0454810608140384,0.0859490270358564,141.441333288116,"CHH","Os09g0441250","promoter","Os09g0441250","Conserved hypothetical protein && sp|A0A1D6F9Y9|C92C6_MAIZE Trimethyltridecatetraene synthase OS=Zea mays OX=4577 GN=CYP92C6 PE=1 SV=1 && -"]
[9,16416613,16416784,172,54,0.161289311736293,0.0769769156690549,0.0843123960672377,288.565948348951,"CHH","9:16415594:16417595","CGI_shore"]
[9,16416613,16416784,172,54,0.161289311736293,0.0769769156690549,0.0843123960672377,288.565948348951,"CHH","9:16416140:16418141","CGI_shore"]
[9,16416613,16416784,172,54,0.161289311736293,0.0769769156690549,0.0843123960672377,288.565948348951,"CHH","9:16416208:16418208","CGI_shore"]
[9,16531368,16531626,259,27,0.235836081004188,0.0210804197893684,0.214755661214819,159.212399548866,"CHH","Os09g0444100","intron","Os09g0444100","Similar to Minus dominance protein && - && PF02042:RWP-RK domain"]
[9,16545840,16546014,175,53,0.31502650905524,0.185827767770366,0.129198741284874,280.793966567682,"CHH","Os09g0444200","intron","Os09g0444200","Lecithin:cholesterol acyltransferase family protein && sp|Q9FNA9|PDAT1_ARATH Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=PDAT1 PE=2 SV=1 && -"]
[9,16619558,16619643,86,20,0.495538980093973,0.330815075582828,0.164723904511145,107.842470740101,"CHH","9:16618765:16620765","CGI_shore"]
[9,16619558,16619643,86,20,0.495538980093973,0.330815075582828,0.164723904511145,107.842470740101,"CHH","9:16619087:16621088","CGI_shore"]
[9,16624785,16624844,60,10,0.829852599432585,0.328009756571879,0.501842842860706,50.2860764332366,"CG","9:16622003:16628354","CGI"]
[9,16694052,16694239,188,61,0.182941615299906,0.0722326062278281,0.110709009072078,296.959211895789,"CHH","9:16692300:16694301","CGI_shore"]
[9,16694052,16694239,188,61,0.182941615299906,0.0722326062278281,0.110709009072078,296.959211895789,"CHH","9:16692391:16694391","CGI_shore"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16695598:16697599","CGI_shore"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16695814:16697814","CGI_shore"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16696408:16697099","CGI"]
[9,16696243,16696474,232,63,0.305878957085925,0.148630479843917,0.157248477242008,294.110576540111,"CHH","9:16694407:16696407","CGI_shore"]
[9,16708149,16708341,193,54,0.167541986083268,0.0685550829724439,0.098986903110824,285.118162025614,"CHH","9:16707836:16709837","CGI_shore"]
[9,16762103,16762167,65,27,0.0921371443801461,0.0109434439014533,0.0811937004786928,150.004515709424,"CHH","9:16761663:16763663","CGI_shore"]
[9,16805621,16805688,68,27,0.200820007689291,0.0978691066408885,0.102950901048403,138.532764477759,"CHH","9:16799422:16806663","CGI"]
[9,16812512,16812664,153,28,0.439892494959261,0.14698655354707,0.292905941412191,143.591166498297,"CHH","9:16810742:16812742","CGI_shore"]
[9,16833291,16833454,164,52,0.182103239389632,0.0341127072287118,0.14799053216092,273.677947392637,"CHH","Os09g0449600","promoter","F-box protein 490","Similar to F-box protein interaction domain containing protein, expressed && sp|Q9SU30|CPR1_ARATH F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 && PF07734:F-box associated|PF00646:F-box domain"]
[9,16833291,16833454,164,52,0.182103239389632,0.0341127072287118,0.14799053216092,273.677947392637,"CHH","9:16833168:16833521","CGI"]
[9,16844137,16844236,100,28,0.106106001908542,0.0165252420417209,0.0895807598668214,125.765034464068,"CHH","9:16843961:16845961","CGI_shore"]
[9,16844137,16844236,100,28,0.106106001908542,0.0165252420417209,0.0895807598668214,125.765034464068,"CHH","9:16842642:16844642","CGI_shore"]
[9,16868638,16868824,187,55,0.104579263647926,0.0319491469655536,0.0726301166823727,248.80802562686,"CHH","9:16867733:16869733","CGI_shore"]
[9,16872024,16872248,225,79,0.25044872620058,0.14296220501789,0.10748652118269,421.952312569714,"CHH","9:16870027:16872028","CGI_shore"]
[9,16879010,16879215,206,68,0.110148738556991,0.0168071504892314,0.0933415880677597,324.640499281534,"CHH","9:16878622:16894816","CGI"]
[9,16956142,16956220,79,23,0.148901604164296,0.0565033045911586,0.0923982995731371,104.813341868888,"CHH","9:16953616:16963867","CGI"]
[9,16962155,16962349,195,36,0.558442514313545,0.271647515388487,0.286794998925059,189.817957091799,"CHH","Os09g0452300","promoter","Os09g0452300","Similar to cDNA, clone: J065054A13, full insert sequence && sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana OX=3702 GN=At1g05030 PE=2 SV=2 && -"]
[9,16962155,16962349,195,36,0.558442514313545,0.271647515388487,0.286794998925059,189.817957091799,"CHH","9:16953616:16963867","CGI"]
[9,17002388,17002457,70,15,0.282128145599172,0.145072701896338,0.137055443702834,88.6182042547792,"CHH","Os09g0453300","promoter","ANNEXIN 10","Annexin family protein && sp|P13214|ANXA4_BOVIN Annexin A4 OS=Bos taurus OX=9913 GN=ANXA4 PE=1 SV=2 && PF00191:Annexin"]
[9,17002388,17002457,70,15,0.282128145599172,0.145072701896338,0.137055443702834,88.6182042547792,"CHH","9:17002376:17004377","CGI_shore"]
[9,17176145,17176262,118,31,0.110287053461568,0.0291992605523581,0.0810877929092103,148.16017562124,"CHH","9:17174882:17176883","CGI_shore"]
[9,17189752,17189957,206,74,0.157127984947455,0.0419301736615432,0.115197811285911,297.14659334536,"CG","Os09g0456200","promoter","b-ZIP TRANSCRIPTION FACTOR 72","Similar to BZIP transcription factor ABI5 && sp|Q6ZDF3|TRAB1_ORYSJ bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRAB1 PE=1 SV=2 && PF00170:bZIP transcription factor"]
[9,17189752,17189957,206,74,0.157127984947455,0.0419301736615432,0.115197811285911,297.14659334536,"CG","9:17189750:17191112","CGI"]
[9,17256660,17257181,522,38,0.162260984886893,0.0519514326072905,0.110309552279602,189.65964872082,"CHH","Os09g0457100","promoter","ABA-8'-HYDROXYLASE 3","Cytochrome P450 family protein && sp|Q0J185|ABAH3_ORYSJ Abscisic acid 8'-hydroxylase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYP707A7 PE=2 SV=1 && PF00067:Cytochrome P450"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17355095:17357095","CGI_shore"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17355269:17357270","CGI_shore"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17356234:17358235","CGI_shore"]
[9,17357038,17357124,87,15,0.477762076411827,0.235419428195297,0.24234264821653,80.7390292061247,"CG","9:17357096:17357453","CGI"]
[9,17361821,17361961,141,33,0.251699241511574,0.0894311075803309,0.162268133931243,202.540731404488,"CHH","9:17360324:17362325","CGI_shore"]
[9,17456825,17456979,155,39,0.259671611600925,0.0830047702281954,0.17666684137273,225.464422163016,"CHH","9:17444563:17473286","CGI"]
[9,17457717,17458019,303,62,0.238339298517367,0.0768058211436041,0.161533477373763,292.239954400312,"CHH","Os09g0461700","promoter","Os09g0461700","Alpha/beta hydrolase fold-3 domain containing protein && sp|I4DST8|TCEA1_TULGE Tuliposide A-converting enzyme 1, chloroplastic OS=Tulipa gesneriana OX=13306 GN=TCEA1 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17457717,17458019,303,62,0.238339298517367,0.0768058211436041,0.161533477373763,292.239954400312,"CHH","9:17444563:17473286","CGI"]
[9,17466588,17466786,199,76,0.19965008330204,0.102657724404141,0.0969923588978991,397.812775261816,"CHH","9:17444563:17473286","CGI"]
[9,17466588,17466786,199,76,0.19965008330204,0.102657724404141,0.0969923588978991,397.812775261816,"CHH","Os09g0462100","promoter","Os09g0462100","Alpha/beta hydrolase fold-3 domain containing protein && sp|Q9SMM9|CXE13_ARATH Probable carboxylesterase 13 OS=Arabidopsis thaliana OX=3702 GN=CXE13 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17614649,17614762,114,23,0.213375302310613,0.0348798710550939,0.178495431255519,126.248466265933,"CHH","9:17612726:17623240","CGI"]
[9,17706769,17706869,101,18,0.0700033266410158,0.0089296012973173,0.0610737253436985,84.3277157348423,"CHH","9:17705201:17707202","CGI_shore"]
[9,17706769,17706869,101,18,0.0700033266410158,0.0089296012973173,0.0610737253436985,84.3277157348423,"CHH","Os09g0466400","promoter","zinc finger homeodomain class homeobox transcription factor 1","Zinc finger homeodomain (ZF-HD) class homeobox transcription factor, Rice morphogenesis, Modulation of leaf rollin && sp|Q6YXH5|ZHD1_ORYSJ Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZHD1 PE=2 SV=1 && PF04770:ZF-HD protein dimerisation region"]
[9,17706769,17706869,101,18,0.0700033266410158,0.0089296012973173,0.0610737253436985,84.3277157348423,"CHH","9:17705528:17707528","CGI_shore"]
[9,17718822,17718897,76,34,0.164509030347739,0.0551485516719897,0.10936047867575,188.393263830983,"CHH","9:17716865:17718865","CGI_shore"]
[9,17718822,17718897,76,34,0.164509030347739,0.0551485516719897,0.10936047867575,188.393263830983,"CHH","9:17716965:17718966","CGI_shore"]
[9,17718822,17718897,76,34,0.164509030347739,0.0551485516719897,0.10936047867575,188.393263830983,"CHH","9:17718866:17719815","CGI"]
[9,17768163,17768258,96,20,0.126242720673438,0.0476794662315489,0.0785632544418889,96.7520154739076,"CHH","Os09g0467400","intron","PURINE PERMEASE 3","Similar to ATPUP3 && sp|Q9FZ95|PUP3_ARATH Purine permease 3 OS=Arabidopsis thaliana OX=3702 GN=PUP3 PE=2 SV=1 && PF16913:Purine nucleobase transmembrane transport"]
[9,17768163,17768258,96,20,0.126242720673438,0.0476794662315489,0.0785632544418889,96.7520154739076,"CHH","9:17761685:17816220","CGI"]
[9,17913474,17913646,173,49,0.460294848560268,0.285723578291811,0.174571270268457,267.505971483568,"CHH","9:17910755:17914535","CGI"]
[9,17917491,17917559,69,21,0.0991747886033221,0.0279526416861953,0.0712221469171269,94.4086556313863,"CHH","Os09g0470900","promoter","Os09g0470900","Uncharacterised conserved protein UCP013022 domain containing protein && sp|Q8N9R8|SCAI_HUMAN Protein SCAI OS=Homo sapiens OX=9606 GN=SCAI PE=1 SV=2 && PF12070:Protein SCAI"]
[9,17917491,17917559,69,21,0.0991747886033221,0.0279526416861953,0.0712221469171269,94.4086556313863,"CHH","9:17916854:17918854","CGI_shore"]
[9,17917491,17917559,69,21,0.0991747886033221,0.0279526416861953,0.0712221469171269,94.4086556313863,"CHH","9:17916967:17918968","CGI_shore"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","9:17927893:17936120","CGI"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471000","exon","Os09g0471000","Similar to cupin, RmlC-type && sp|Q9LXG9|PCO1_ARATH Plant cysteine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PCO1 PE=1 SV=1 && -"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471000","utr3","Os09g0471000","Similar to cupin, RmlC-type && sp|Q9LXG9|PCO1_ARATH Plant cysteine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PCO1 PE=1 SV=1 && -"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471150","promoter","Os09g0471150","Hypothetical gene && sp|Q9SJZ2|PER17_ARATH Peroxidase 17 OS=Arabidopsis thaliana OX=3702 GN=PER17 PE=2 SV=1 && PF00141:Peroxidase"]
[9,17931928,17932103,176,45,0.214891177390861,0.0976329676297871,0.117258209761074,223.02038831362,"CHH","Os09g0471000","intron","Os09g0471000","Similar to cupin, RmlC-type && sp|Q9LXG9|PCO1_ARATH Plant cysteine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PCO1 PE=1 SV=1 && -"]
[9,18007325,18007520,196,37,0.13774426723676,0.0398849342852573,0.0978593329515029,180.817361212714,"CHH","Os09g0471800","intron","WALL-ASSOCIATED KINASE GENE 85","Similar to WAK80 - OsWAK receptor-like protein kinase && sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 && -"]
[9,18007325,18007520,196,37,0.13774426723676,0.0398849342852573,0.0978593329515029,180.817361212714,"CHH","9:18005549:18007549","CGI_shore"]
[9,18011449,18011506,58,16,0.27977094703211,0.160088444496402,0.119682502535708,72.3409819271195,"CHH","9:18010606:18012607","CGI_shore"]
[9,18011449,18011506,58,16,0.27977094703211,0.160088444496402,0.119682502535708,72.3409819271195,"CHH","9:18011135:18013135","CGI_shore"]
[9,18011449,18011506,58,16,0.27977094703211,0.160088444496402,0.119682502535708,72.3409819271195,"CHH","Os09g0471900","promoter","Os09g0471900","Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain containing protein && sp|Q1HFZ0|NSUN2_MOUSE RNA cytosine C(5)-methyltransferase NSUN2 OS=Mus musculus OX=10090 GN=Nsun2 PE=1 SV=2 && PF01189:16S rRNA methyltransferase RsmB/F"]
[9,18065444,18065635,192,60,0.203833150131393,0.0677845632844827,0.13604858684691,387.585296515267,"CHH","9:18064679:18066679","CGI_shore"]
[9,18065444,18065635,192,60,0.203833150131393,0.0677845632844827,0.13604858684691,387.585296515267,"CHH","9:18065104:18067105","CGI_shore"]
[9,18065444,18065635,192,60,0.203833150131393,0.0677845632844827,0.13604858684691,387.585296515267,"CHH","Os09g0472900","promoter","Os09g0472900","Similar to Blight-associated protein p12 precursor && sp|Q9ZP41|EGC_CITJA EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1 && PF03330:Lytic transglycolase"]
[9,18092939,18093083,145,49,0.162954824342144,0.0797584114511094,0.083196412891035,209.003690518016,"CHH","9:18092186:18094187","CGI_shore"]
[9,18092939,18093083,145,49,0.162954824342144,0.0797584114511094,0.083196412891035,209.003690518016,"CHH","Os09g0473502","promoter","Os09g0473502","Hypothetical gene && sp|B6TTV8|WTF1_MAIZE Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1 && PF11955:Plant organelle RNA recognition domain"]
[9,18092939,18093083,145,49,0.162954824342144,0.0797584114511094,0.083196412891035,209.003690518016,"CHH","9:18093076:18095076","CGI_shore"]
[9,18129561,18129612,52,18,0.107120459995514,0.0445016817591234,0.0626187782363901,89.8761438530182,"CHH","9:18128288:18130288","CGI_shore"]
[9,18206876,18207010,135,34,0.28778153063753,0.118561059496284,0.169220471141246,183.194189415226,"CHH","Os09g0475400","promoter","basic helix-loop-helix protein 032","Helix-loop-helix DNA-binding domain containing protein && sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1 && -"]
[9,18206876,18207010,135,34,0.28778153063753,0.118561059496284,0.169220471141246,183.194189415226,"CHH","9:18200228:18210389","CGI"]
[9,18221793,18221905,113,33,0.133213217626467,0.038642538252509,0.0945706793739581,175.808299136188,"CHH","Os09g0475500","promoter","Os09g0475500","Protein of unknown function DUF246, plant family protein && sp|Q4V398|RRT1_ARATH Rhamnogalacturonan I rhamnosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RRT1 PE=1 SV=1 && -"]
[9,18221793,18221905,113,33,0.133213217626467,0.038642538252509,0.0945706793739581,175.808299136188,"CHH","9:18221183:18223184","CGI_shore"]
[9,18221793,18221905,113,33,0.133213217626467,0.038642538252509,0.0945706793739581,175.808299136188,"CHH","9:18221251:18223251","CGI_shore"]
[9,18257257,18257461,205,43,0.22032503334204,0.0767063221602008,0.143618711181839,223.155263212171,"CHH","Os09g0476800","promoter","FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 10","FAS1 domain domain containing protein && sp|Q9FM65|FLA1_ARATH Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 && PF02469:Fasciclin domain"]
[9,18257257,18257461,205,43,0.22032503334204,0.0767063221602008,0.143618711181839,223.155263212171,"CHH","9:18247320:18260849","CGI"]
[9,18436634,18436820,187,50,0.342234961285753,0.19527414266732,0.146960818618433,314.077276715647,"CHH","9:18436226:18438227","CGI_shore"]
[9,18436634,18436820,187,50,0.342234961285753,0.19527414266732,0.146960818618433,314.077276715647,"CHH","9:18436464:18438464","CGI_shore"]
[9,18585107,18585416,310,71,0.227881871468946,0.0896361786065614,0.138245692862385,389.77771528575,"CHH","9:18585083:18587083","CGI_shore"]
[9,18689135,18689326,192,56,0.138701039427122,0.0408247566981967,0.0978762827289255,313.840817349814,"CHH","Os09g0484300","intron","Os09g0484300","Similar to Polyubiquitin-like protein && sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana OX=3702 GN=UPL5 PE=1 SV=1 && PF00632:HECT-domain (ubiquitin-transferase)"]
[9,18722398,18722617,220,63,0.356083023468682,0.200873903850257,0.155209119618425,308.815012773574,"CHH","9:18713637:18726122","CGI"]
[9,18728797,18728930,134,39,0.18535085057329,0.0314373351844888,0.153913515388802,239.496696310273,"CHH","9:18728313:18730313","CGI_shore"]
[9,18729954,18730101,148,36,0.421807872786608,0.217799259194738,0.20400861359187,223.46710034426,"CHH","9:18728313:18730313","CGI_shore"]
[9,18828134,18828252,119,41,0.122109216268451,0.0252508944017543,0.0968583218666969,186.031551320399,"CHH","9:18825776:18832368","CGI"]
[9,18828134,18828252,119,41,0.122109216268451,0.0252508944017543,0.0968583218666969,186.031551320399,"CHH","Os09g0488000","promoter","GLUCOSAMINE-6-P ACETYLTRANSFERASE 1","Acyl-CoA N-acyltransferase domain containing protein && sp|Q5U9F2|GNA1_ORYSJ Glucosamine 6-phosphate N-acetyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GNA1 PE=1 SV=1 && PF00583:Acetyltransferase (GNAT) family"]
[9,19089508,19089710,203,54,0.240880178068314,0.107443656364904,0.133436521703409,309.14943388436,"CHH","9:19089175:19091176","CGI_shore"]
[9,19138830,19139093,264,80,0.110231661114046,0.0411595711211312,0.0690720899929147,366.755340537481,"CHH","9:19138070:19140070","CGI_shore"]
[9,19392223,19392420,198,62,0.0704513547680917,0.0388590906643879,0.0315922641037037,243.017969845645,"CHH","9:19386330:19399243","CGI"]
[9,19519644,19519734,91,26,0.139549689707962,0.0506856735340091,0.0888640161739529,127.493870633814,"CG","Os09g0505000","exon","Os09g0505000","Zinc finger, RING/FYVE/PHD-type domain containing protein && - && PF13920:Zinc finger, C3HC4 type (RING finger)"]
[9,19519644,19519734,91,26,0.139549689707962,0.0506856735340091,0.0888640161739529,127.493870633814,"CG","9:19519347:19521187","CGI"]
[9,19567610,19567672,63,12,0.190557964529957,0.0646188366068321,0.125939127923125,53.3551271386064,"CHG","9:19566435:19568436","CGI_shore"]
[9,19567610,19567672,63,12,0.190557964529957,0.0646188366068321,0.125939127923125,53.3551271386064,"CHG","Os09g0505700","intron","Os09g0505700","Aldolase-type TIM barrel domain containing protein && sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0505700 PE=1 SV=1 && PF00834:Ribulose-phosphate 3 epimerase family"]
[9,19575982,19576239,258,50,0.178067794155613,0.0743410369337137,0.1037267572219,244.347014649491,"CHH","9:19574523:19576523","CGI_shore"]
[9,19575982,19576239,258,50,0.178067794155613,0.0743410369337137,0.1037267572219,244.347014649491,"CHH","Os09g0505850","promoter","Os09g0505850","Hypothetical protein && sp|Q9FKS0|UKL1_ARATH Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=UKL1 PE=1 SV=1 && -"]
[9,19575982,19576239,258,50,0.178067794155613,0.0743410369337137,0.1037267572219,244.347014649491,"CHH","Os09g0505900","promoter","PURPLE ACID PHOSPHATASE 27C","Similar to ATPAP27/PAP27 && sp|Q5MAU8|PPA27_ARATH Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana OX=3702 GN=PAP27 PE=2 SV=1 && PF16656:Purple acid Phosphatase, N-terminal domain|PF00149:Calcineurin-like phosphoesterase|PF17808:Fn3-like domain from Purple Acid Phosphatase"]
[9,19769367,19769421,55,14,0.0683455779285857,0.0100658412700497,0.0582797366585359,70.3041764690193,"CHH","Os09g0509400","promoter","Os09g0509400","Conserved hypothetical protein && sp|Q5RBA3|F214B_PONAB Protein FAM214B OS=Pongo abelii OX=9601 GN=FAM214B PE=2 SV=1 && PF13889:Chromosome segregation during meiosis"]
[9,19769367,19769421,55,14,0.0683455779285857,0.0100658412700497,0.0582797366585359,70.3041764690193,"CHH","9:19767814:19769814","CGI_shore"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","9:19794090:19796090","CGI_shore"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","Os09g0510000","promoter","Os09g0510000","Hypothetical protein && - && -"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","9:19795421:19795700","CGI"]
[9,19795681,19795803,123,39,0.141939166704991,0.00673127697514321,0.135207889729847,294.36929832193,"CHH","9:19795700:19797701","CGI_shore"]
[9,19871486,19871695,210,55,0.170100250919005,0.0261408598336866,0.143959391085318,328.021539551393,"CHH","9:19870060:19872061","CGI_shore"]
[9,19922565,19922730,166,58,0.22382576172663,0.0561140023800489,0.167711759346581,261.962767050995,"CG","Os09g0512200","promoter","Os09g0512200","AMP-dependent synthetase/ligase domain containing protein && sp|Q8W471|AAE15_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=AAE15 PE=1 SV=1 && -"]
[9,19922565,19922730,166,58,0.22382576172663,0.0561140023800489,0.167711759346581,261.962767050995,"CG","9:19921549:19923550","CGI_shore"]
[9,19922565,19922730,166,58,0.22382576172663,0.0561140023800489,0.167711759346581,261.962767050995,"CG","9:19922139:19923174","CGI"]
[9,20040223,20040276,54,14,0.115878110331136,0.0419732744254593,0.0739048359056768,62.8972336968251,"CG","Os09g0514600","exon","Os09g0514600","Beta-grasp fold, ferredoxin-type domain containing protein && sp|Q05B51|FDX2_BOVIN Ferredoxin-2, mitochondrial OS=Bos taurus OX=9913 GN=FDX2 PE=2 SV=1 && -"]
[9,20040223,20040276,54,14,0.115878110331136,0.0419732744254593,0.0739048359056768,62.8972336968251,"CG","9:20039788:20040361","CGI"]
[9,20304930,20305068,139,40,0.400670918129468,0.244136819109729,0.156534099019739,222.336294256497,"CHH","Os09g0520000","promoter","Os09g0520000","Hypothetical protein && - && -"]
[9,20304930,20305068,139,40,0.400670918129468,0.244136819109729,0.156534099019739,222.336294256497,"CHH","9:20303872:20305872","CGI_shore"]
[9,20305177,20305401,225,60,0.195325588131306,0.0405696434947352,0.154755944636571,389.63677784576,"CHH","Os09g0520000","promoter","Os09g0520000","Hypothetical protein && - && -"]
[9,20305177,20305401,225,60,0.195325588131306,0.0405696434947352,0.154755944636571,389.63677784576,"CHH","9:20303872:20305872","CGI_shore"]
[9,20326632,20326810,179,71,0.0945821044153966,0.0257078109544715,0.0688742934609252,332.021107071106,"CHH","9:20325511:20327511","CGI_shore"]
[9,20326632,20326810,179,71,0.0945821044153966,0.0257078109544715,0.0688742934609252,332.021107071106,"CHH","Os09g0520400","exon","b-ZIP TRANSCRIPTION FACTOR 76","Hypothetical conserved gene && sp|Q8H1F0|BZP29_ARATH bZIP transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=BZIP29 PE=2 SV=1 && PF07716:Basic region leucine zipper"]
[9,20326632,20326810,179,71,0.0945821044153966,0.0257078109544715,0.0688742934609252,332.021107071106,"CHH","9:20326623:20326882","CGI"]
[9,20400963,20401128,166,33,0.3768231147461,0.153888149822532,0.222934964923569,213.542322939553,"CHH","Os09g0522100","promoter","ETHYLENE RESPONSE FACTOR 133","Similar to Dehydration-responsive element-binding protein 1H && sp|A2Z388|DRE1H_ORYSI Dehydration-responsive element-binding protein 1H OS=Oryza sativa subsp. indica OX=39946 GN=DREB1H PE=2 SV=1 && PF00847:AP2 domain"]
[9,20438763,20438814,52,19,0.142557243543915,0.00394980513581601,0.138607438408099,166.41221141442,"CHH","9:20437668:20439668","CGI_shore"]
[9,20483120,20483235,116,37,0.13532510411982,0.0441046933097462,0.0912204108100741,189.618854842084,"CHH","9:20482698:20484698","CGI_shore"]
[9,20483120,20483235,116,37,0.13532510411982,0.0441046933097462,0.0912204108100741,189.618854842084,"CHH","Os09g0524500","promoter","Os09g0524500","Similar to Oxidoreductase, short chain dehydrogenase/reductase family protein, expressed && - && -"]
[9,20493858,20494039,182,42,0.367984736007604,0.228451465312752,0.139533270694852,190.565840117725,"CHH","9:20484699:20497026","CGI"]
[9,20504782,20505101,320,102,0.181237154877363,0.0484461543463843,0.132791000530979,676.333527968223,"CHH","9:20503351:20505352","CGI_shore"]
[9,20509203,20509392,190,50,0.26640635238229,0.1476341365666,0.118772215815691,264.37392855609,"CHH","9:20507571:20509571","CGI_shore"]
[9,20553691,20553855,165,37,0.229592425737757,0.12101877227084,0.108573653466917,176.836075349329,"CHH","9:20552557:20555516","CGI"]
[9,20553691,20553855,165,37,0.229592425737757,0.12101877227084,0.108573653466917,176.836075349329,"CHH","Os09g0525900","promoter","Rhomboid 16, RHOMBOID 16","Peptidase S54, rhomboid domain containing protein && sp|F4JBM4|RBL4_ARATH RHOMBOID-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RBL4 PE=2 SV=1 && PF01694:Rhomboid family"]
[9,20609922,20610202,281,95,0.396045432813181,0.242497527461441,0.15354790535174,536.322506292114,"CHH","9:20608330:20610686","CGI"]
[9,20609922,20610202,281,95,0.396045432813181,0.242497527461441,0.15354790535174,536.322506292114,"CHH","Os09g0526800","promoter","Os09g0526800","NC domain containing protein && sp|Q93V51|PSE1_ARATH Protein LEAD-SENSITIVE 1 OS=Arabidopsis thaliana OX=3702 GN=PSE1 PE=2 SV=1 && -"]
[9,20704796,20704989,194,64,0.218917628832821,0.0825644940399335,0.136353134792888,373.862285682659,"CHH","9:20704292:20706292","CGI_shore"]
[9,20801745,20801871,127,37,0.220297869679292,0.125133208817448,0.0951646608618439,165.557083324091,"CHH","9:20800565:20802565","CGI_shore"]
[9,20801745,20801871,127,37,0.220297869679292,0.125133208817448,0.0951646608618439,165.557083324091,"CHH","Os09g0531100","intron","Os09g0531100","Conserved hypothetical protein && - && -"]
[9,20905562,20905688,127,53,0.281893393054124,0.0721562557550177,0.209737137299106,233.694225723924,"CG","9:20905418:20906391","CGI"]
[9,20905562,20905688,127,53,0.281893393054124,0.0721562557550177,0.209737137299106,233.694225723924,"CG","Os09g0532800","exon","Os09g0532800","Similar to peptidase S8 and S53, subtilisin, kexin, sedolisin && - && -"]
[9,20963330,20963513,184,45,0.240980782558125,0.123163227994104,0.11781755456402,209.015129085714,"CHH","Os09g0533650","intron","Os09g0533650","Conserved hypothetical protein && sp|Q9SF86|PCRK1_ARATH Serine/threonine-protein kinase PCRK1 OS=Arabidopsis thaliana OX=3702 GN=PCRK1 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[9,20963330,20963513,184,45,0.240980782558125,0.123163227994104,0.11781755456402,209.015129085714,"CHH","9:20962889:20964890","CGI_shore"]
[9,20963330,20963513,184,45,0.240980782558125,0.123163227994104,0.11781755456402,209.015129085714,"CHH","Os09g0533600","intron","BROAD-SPECTRUM RESISTANCE 1","Similar to Avr9/Cf-9 induced kinase 1 && sp|Q9LTC0|PBL19_ARATH Probable serine/threonine-protein kinase PBL19 OS=Arabidopsis thaliana OX=3702 GN=PBL19 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[9,21057953,21058044,92,23,0.0826313395042033,0.00273757631158608,0.0798937631926172,100.623595901008,"CHH","9:21054612:21062483","CGI"]
[9,21057953,21058044,92,23,0.0826313395042033,0.00273757631158608,0.0798937631926172,100.623595901008,"CHH","Os09g0535500","promoter","Os09g0535500","Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8) && sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 && PF13639:Ring finger domain"]
[9,21116270,21116452,183,59,0.191191870475119,0.0884782586299396,0.102713611845179,328.247728850624,"CHH","Os09g0536700","promoter","MAJOR FACILITATOR SUPERFAMILY 5","Similar to predicted protein && sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1 && -"]
[9,21116270,21116452,183,59,0.191191870475119,0.0884782586299396,0.102713611845179,328.247728850624,"CHH","9:21114483:21116484","CGI_shore"]
[9,21116270,21116452,183,59,0.191191870475119,0.0884782586299396,0.102713611845179,328.247728850624,"CHH","9:21114753:21116753","CGI_shore"]
[9,21128499,21128655,157,38,0.422120425256725,0.243602803325095,0.178517621931631,211.18008322174,"CHH","9:21127524:21129525","CGI_shore"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","9:21131110:21133110","CGI_shore"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","9:21131242:21133243","CGI_shore"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","Os09g0537000","exon","Os09g0537000","Hypothetical protein && - && -"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","Os09g0537200","promoter","Os09g0537200","Conserved hypothetical protein && - && -"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","Os09g0537100","exon","Os09g0537100","Conserved hypothetical protein && - && -"]
[9,21133067,21133313,247,67,0.704306951152759,0.556959274632657,0.147347676520102,419.039253934038,"CG","9:21133111:21135014","CGI"]
[9,21159349,21159441,93,32,0.319324980700715,0.105537108750674,0.213787871950041,177.359879229931,"CHH","Os09g0537700","promoter","RIBONUCLEASE 4","S-like ribonuclease, Salinity tolerance, Abiotic stress response, Regulation of photomorphogenesi && - && PF00445:Ribonuclease T2 family"]
[9,21159349,21159441,93,32,0.319324980700715,0.105537108750674,0.213787871950041,177.359879229931,"CHH","9:21158156:21160156","CGI_shore"]
[9,21366643,21366788,146,63,0.135485020283929,0.0511683023829927,0.084316717900936,267.239359020703,"CG","Os09g0542500","promoter","Os09g0542500","Domain of unknown function DUF632 domain containing protein && sp|A0A178VBJ0|APSR1_ARATH Protein ALTERED PHOSPHATE STARVATION RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=APSR1 PE=2 SV=1 && PF04782:Protein of unknown function (DUF632)"]
[9,21366643,21366788,146,63,0.135485020283929,0.0511683023829927,0.084316717900936,267.239359020703,"CG","9:21366507:21367380","CGI"]
[9,21386353,21386539,187,61,0.209035316272052,0.0491545936594243,0.159880722612627,282.639368096843,"CG","9:21382230:21393018","CGI"]
[9,21386353,21386539,187,61,0.209035316272052,0.0491545936594243,0.159880722612627,282.639368096843,"CG","Os09g0542900","exon","Os09g0542900","Conserved hypothetical protein && - && -"]
[9,21419646,21419759,114,18,0.414399573345551,0.179612063716437,0.234787509629114,85.6581471320957,"CHH","9:21418442:21420442","CGI_shore"]
[9,21419646,21419759,114,18,0.414399573345551,0.179612063716437,0.234787509629114,85.6581471320957,"CHH","9:21418770:21420771","CGI_shore"]
[9,21487344,21487441,98,26,0.0838429282544865,0.0154777638896796,0.0683651643648069,122.60452225047,"CHH","Os09g0544300","promoter","Os09g0544300","ATMRK serine/threonine protein kinase-like domain containing protein && sp|F4JTP5|STY46_ARATH Serine/threonine-protein kinase STY46 OS=Arabidopsis thaliana OX=3702 GN=STY46 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[9,21487344,21487441,98,26,0.0838429282544865,0.0154777638896796,0.0683651643648069,122.60452225047,"CHH","9:21486481:21488481","CGI_shore"]
[9,21649960,21650120,161,20,0.134072765391745,0.0180007020477626,0.116072063343983,96.0852098372226,"CHH","9:21648979:21650979","CGI_shore"]
[9,21649960,21650120,161,20,0.134072765391745,0.0180007020477626,0.116072063343983,96.0852098372226,"CHH","Target=(TA)n:1-291;Class=Simple_repeat","repeat"]
[9,21649960,21650120,161,20,0.134072765391745,0.0180007020477626,0.116072063343983,96.0852098372226,"CHH","Target=(TATATG)n:4-120;Class=Simple_repeat","repeat"]
[9,21710665,21711156,492,132,0.212409088499412,0.0859781805619666,0.126430907937445,771.606366896128,"CHH","9:21708692:21711498","CGI"]
[9,21811380,21811924,545,133,0.318791837272218,0.181811464271982,0.136980373000235,684.902327079899,"CHH","Os09g0551201","intron","Os09g0551201","Hypothetical conserved gene && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF01453:D-mannose binding lectin|PF00069:Protein kinase domain|PF08276:PAN-like domain|PF00954:S-locus glycoprotein domain"]
[9,21839135,21839195,61,19,0.174888099014148,0.0791284735293128,0.0957596254848356,91.2168522801568,"CHH","9:21839133:21841133","CGI_shore"]
[9,21839427,21839619,193,62,0.322765552848156,0.197469709528469,0.125295843319687,330.597929196157,"CHH","9:21839133:21841133","CGI_shore"]
[9,21839427,21839619,193,62,0.322765552848156,0.197469709528469,0.125295843319687,330.597929196157,"CHH","Os09g0551400","promoter","Os09g0551400","Similar to S-locus receptor-like kinase RLK14 && sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 && PF08276:PAN-like domain|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[9,21855834,21855912,79,23,0.246247215508165,0.116122834745806,0.13012438076236,117.251299275596,"CHH","9:21854578:21856578","CGI_shore"]
[9,21855834,21855912,79,23,0.246247215508165,0.116122834745806,0.13012438076236,117.251299275596,"CHH","Os09g0551600","promoter","Os09g0551600","Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101) && sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1 && PF00505:HMG (high mobility group) box"]
[9,21931417,21931754,338,92,0.187268314877926,0.0673640079561893,0.119904306921736,545.067713694877,"CHH","Os09g0553600","intron","Os09g0553600","Similar to NADC homolog && sp|Q0IZS0|NADC_ORYSJ Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0553600 PE=2 SV=1 && PF02749:Quinolinate phosphoribosyl transferase, N-terminal domain|PF01729:Quinolinate phosphoribosyl transferase, C-terminal domain"]
[9,21931417,21931754,338,92,0.187268314877926,0.0673640079561893,0.119904306921736,545.067713694877,"CHH","9:21931346:21933347","CGI_shore"]
[9,21953854,21954045,192,48,0.0963876938888384,0.0370980048421246,0.0592896890467138,246.590634008233,"CHH","Os09g0554000","promoter","PHOSPHATE TRANSPORTER 20","Similar to Mitochondrial phosphate transporter && sp|Q7DNC3|MPCP1_ARATH Mitochondrial phosphate carrier protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MPT1 PE=2 SV=1 && -"]
[9,21953854,21954045,192,48,0.0963876938888384,0.0370980048421246,0.0592896890467138,246.590634008233,"CHH","9:21952550:21954551","CGI_shore"]
[9,22375541,22375686,146,34,0.385880612475886,0.238139760927166,0.14774085154872,171.59052790672,"CHH","Os09g0563200","promoter","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 18","Similar to Potassium transporter 11 (AtPOT11) && sp|Q653B6|HAK18_ORYSJ Potassium transporter 18 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK18 PE=2 SV=1 && -"]
[9,22375541,22375686,146,34,0.385880612475886,0.238139760927166,0.14774085154872,171.59052790672,"CHH","Os09g0563250","promoter","Os09g0563250","Zinc finger, DHHC-type, palmitoyltransferase domain containing protein && sp|Q8L5Y5|ZDH17_ARATH Probable protein S-acyltransferase 19 OS=Arabidopsis thaliana OX=3702 GN=PAT19 PE=2 SV=1 && PF01529:DHHC palmitoyltransferase"]
[9,22375541,22375686,146,34,0.385880612475886,0.238139760927166,0.14774085154872,171.59052790672,"CHH","9:22374981:22376981","CGI_shore"]
[9,22390644,22390709,66,17,0.337585764885597,0.142905666016178,0.194680098869419,124.591419202211,"CHH","9:22387705:22392754","CGI"]
[9,22431400,22431571,172,35,0.499358476959172,0.264724538787778,0.234633938171394,192.552096167064,"CHH","9:22430401:22432402","CGI_shore"]
[9,22431400,22431571,172,35,0.499358476959172,0.264724538787778,0.234633938171394,192.552096167064,"CHH","Os09g0564200","intron","Os09g0564200","Hypothetical conserved gene && sp|P43156|CYSP_HEMSP Thiol protease SEN102 OS=Hemerocallis sp. OX=29711 GN=SEN102 PE=2 SV=1 && PF00112:Papain family cysteine protease"]
[9,22436389,22436674,286,92,0.097612564793026,0.0379263023407777,0.0596862624522483,454.71380765445,"CHH","9:22436067:22438067","CGI_shore"]
[9,22436389,22436674,286,92,0.097612564793026,0.0379263023407777,0.0596862624522483,454.71380765445,"CHH","9:22436502:22438502","CGI_shore"]
[9,22464621,22464722,102,22,0.400323066782816,0.185312346483386,0.21501072029943,108.203931603572,"CHH","9:22462864:22464865","CGI_shore"]
[9,22464621,22464722,102,22,0.400323066782816,0.185312346483386,0.21501072029943,108.203931603572,"CHH","9:22463816:22465816","CGI_shore"]
[9,22642291,22642365,75,27,0.193131000611417,0.0896079674950494,0.103523033116368,161.537667961025,"CHH","9:22640644:22642645","CGI_shore"]
[9,22843306,22843519,214,55,0.19999982914137,0.087326143574187,0.112673685567183,256.556347114387,"CHH","9:22842542:22844543","CGI_shore"]
[9,22886464,22886810,347,95,0.202768488765291,0.0636543668477294,0.139114121917562,711.573554131269,"CHH","Os09g0572400","intron","ABC TRANSPORTER F FAMILY MEMBER 5","Similar to Abcf2-prov protein && sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCF1 PE=2 SV=1 && PF00005:ABC transporter|PF12848:ABC transporter"]
[9,22886464,22886810,347,95,0.202768488765291,0.0636543668477294,0.139114121917562,711.573554131269,"CHH","Os09g0572450","intron","Os09g0572450","Hypothetical protein && sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCF1 PE=2 SV=1 && PF00005:ABC transporter|PF12848:ABC transporter"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572700","utr5","UCLACYANIN-LIKE PROTEIN 33","Similar to Blue copper-binding protein && - && -"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572700","exon","UCLACYANIN-LIKE PROTEIN 33","Similar to Blue copper-binding protein && - && -"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572700","promoter","UCLACYANIN-LIKE PROTEIN 33","Similar to Blue copper-binding protein && - && -"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","9:22906000:22908000","CGI_shore"]
[9,22907239,22907369,131,20,0.550176495774518,0.201659874579062,0.348516621195456,113.00376435215,"CHH","Os09g0572800","promoter","Os09g0572800","Ole e 1 allergen family protein && sp|P33050|PSC13_MAIZE Pollen-specific protein C13 OS=Zea mays OX=4577 GN=MGS1 PE=2 SV=1 && PF01190:Pollen proteins Ole e I like"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","9:22928480:22930480","CGI_shore"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","Os09g0573100","promoter","Os09g0573100","Ubiquitin domain containing protein && - && PF10260:Uncharacterized conserved domain (SAYSvFN)"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","9:22928741:22930742","CGI_shore"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","9:22929473:22931473","CGI_shore"]
[9,22929738,22929846,109,55,0.168995464961647,0.0869353767464575,0.0820600882151895,234.815000089318,"CHH","Os09g0573150","exon","Os09g0573150","AIG2-like domain containing protein && - && PF06094:Gamma-glutamyl cyclotransferase, AIG2-like"]
[9,22933577,22933695,119,35,0.210638768636818,0.0302466961838639,0.180392072452954,200.81560067322,"CHH","9:22931721:22933722","CGI_shore"]
[9,22933577,22933695,119,35,0.210638768636818,0.0302466961838639,0.180392072452954,200.81560067322,"CHH","Os09g0573200","promoter","Os09g0573200","Hypothetical conserved gene && - && PF12070:Protein SCAI"]
[9,22933577,22933695,119,35,0.210638768636818,0.0302466961838639,0.180392072452954,200.81560067322,"CHH","9:22932027:22934027","CGI_shore"]
["AC155918",31882,31992,111,32,0.14841911604865,0.0620817191451539,0.0863373969034958,126.959893102191,"CHH","AC155918:31769:32134","CGI"]
["AC160949",63503,63579,77,22,0.497892261598537,0.27863239736835,0.219259864230187,86.9265748128999,"CHG","AC160949:62837:64838","CGI_shore"]
["AC160949",81128,81376,249,89,0.180617941482584,0.110062042721039,0.0705558987615454,557.635249464741,"CHH","AC160949:80758:82707","CGI"]
["AC160949",81855,81965,111,17,0.0841234757455927,0.0188056837387232,0.0653177920068695,88.0500769902801,"CHH","AC160949:80758:82707","CGI"]
["AC160949",88354,88496,143,43,0.112809799203381,0.0315182868765004,0.0812915123268808,201.720120739377,"CHH","AC160949:88340:90340","CGI_shore"]
["AC160949",93668,93758,91,16,0.082238745667992,0.0183384878945862,0.0639002577734058,77.8162821186748,"CHH","AC160949:92624:94625","CGI_shore"]
["AC160949",108612,108712,101,20,0.0828542766983096,0.00675233867310717,0.0761019380252025,102.121125280934,"CHH","AC160949:107774:109775","CGI_shore"]
["AC160949",113268,113332,65,25,0.10774547339461,0.0286008239544992,0.0791446494401108,134.642832369276,"CHH","AC160949:111907:113907","CGI_shore"]
["AC160949",113268,113332,65,25,0.10774547339461,0.0286008239544992,0.0791446494401108,134.642832369276,"CHH","AC160949:113245:115246","CGI_shore"]
["AP008246",99398,99509,112,18,0.208525457060974,0.0271744365968098,0.181351020464164,86.7921675677566,"CHH","AP008246:98978:100979","CGI_shore"]
["AP008246",108652,108812,161,34,0.214533194144235,0.0697203732979359,0.144812820846299,178.361963816784,"CHH","AP008246:107633:109633","CGI_shore"]
["AP008246",132849,132904,56,25,0.0829241245328787,0.0130712327535565,0.0698528917793222,167.272454957097,"CHH","AP008246:132235:134236","CGI_shore"]
["AP008246",132849,132904,56,25,0.0829241245328787,0.0130712327535565,0.0698528917793222,167.272454957097,"CHH","AP008246:132842:133299","CGI"]
["AP008246",134296,134492,197,82,0.0774524747829842,0.0140996253978789,0.0633528493851053,387.949934797468,"CHH","AP008246:133299:135300","CGI_shore"]
["AP008246",174097,174198,102,19,0.0765915096822766,0.0175533023448197,0.0590382073374569,85.1087910099209,"CHH","AP008246:172474:174474","CGI_shore"]
["AP008246",179685,179821,137,50,0.125029930398955,0.0454540197668517,0.0795759106321033,233.443381884443,"CHH","AP008246:178249:180249","CGI_shore"]
["AP008247",38595,38862,268,88,0.447521436369532,0.20863758725478,0.238883849114752,527.807921340367,"CHH","AP008247:38748:40748","CGI_shore"]
["AP008247",139546,139692,147,37,0.262263735023768,0.085068641872016,0.177195093151752,201.171002052095,"CHH","AP008247:137895:139895","CGI_shore"]
["AP008247",139546,139692,147,37,0.262263735023768,0.085068641872016,0.177195093151752,201.171002052095,"CHH","AP008247:139024:141024","CGI_shore"]
["AP008247",145212,145312,101,18,0.0944494897613087,0.0271269647579312,0.0673225250033775,84.4484628241199,"CHH","AP008247:144003:146003","CGI_shore"]
["AP008247",154164,154316,153,38,0.194327864450484,0.0834920583863968,0.110835806064087,183.080766478109,"CHH","AP008247:152532:154533","CGI_shore"]
["AP008247",154164,154316,153,38,0.194327864450484,0.0834920583863968,0.110835806064087,183.080766478109,"CHH","AP008247:153173:155173","CGI_shore"]
["Syng_TIGR_033",1920,2113,194,45,0.157966083181122,0.0458635344140633,0.112102548767059,220.229382091174,"CHH","Syng_TIGR_033:435:2436","CGI_shore"]
["Syng_TIGR_033",1920,2113,194,45,0.157966083181122,0.0458635344140633,0.112102548767059,220.229382091174,"CHH","Syng_TIGR_033:1527:3528","CGI_shore"]

{"sheet":"DMRs of hypo annotation","index":2,"n_rows":4073,"n_cols":14,"rows_kept":4073,"merged":[[0,0,0,7]]}
["Table S3c. DMRs of hypo annotation between OICD and OIBP."]
["#chr","start","end","length","nCG","CK1_meanMethy","WT_meanMethy","diff.Methy","areaStat","C_context","regionID","region","gene_name","gene_description"]
[1,2819,2948,130,18,0.00959235652209096,0.145864459711724,-0.136272103189633,-162.413086995837,"CHH","Os01g0100100","promoter","Os01g0100100","RabGAP/TBC domain containing protein && sp|Q94BY9|GAP22_ARATH Rab GTPase-activating protein 22 OS=Arabidopsis thaliana OX=3702 GN=RABGAP22 PE=1 SV=1 && PF00566:Rab-GTPase-TBC domain"]
[1,2819,2948,130,18,0.00959235652209096,0.145864459711724,-0.136272103189633,-162.413086995837,"CHH","1:2054:4055","CGI_shore"]
[1,222082,222192,111,33,0.012633796080121,0.11881414031305,-0.106180344232929,-187.800517365231,"CHH","1:220923:222924","CGI_shore"]
[1,222082,222192,111,33,0.012633796080121,0.11881414031305,-0.106180344232929,-187.800517365231,"CHH","1:221310:223310","CGI_shore"]
[1,274480,274626,147,34,0.608680777980597,0.772423920606012,-0.163743142625416,-151.449113717664,"CG","Os01g0104900","intron","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,274480,274626,147,34,0.608680777980597,0.772423920606012,-0.163743142625416,-151.449113717664,"CG","1:274478:274949","CGI"]
[1,274480,274626,147,34,0.608680777980597,0.772423920606012,-0.163743142625416,-151.449113717664,"CG","Os01g0104900","exon","Os01g0104900","Transferase family protein && sp|A0A2R6PLK2|AT9_ACTCC Alcohol acyltransferase 9 OS=Actinidia chinensis var. chinensis OX=1590841 GN=AT9 PE=3 SV=1 && PF02458:Transferase family"]
[1,727678,727748,71,18,0.0497868113071525,0.148994188360157,-0.099207377053005,-91.9659231808869,"CHH","Os01g0113325","promoter","Os01g0113325","Hypothetical protein && sp|P93604|LRK10_WHEAT Rust resistance kinase Lr10 OS=Triticum aestivum OX=4565 GN=LRK10 PE=2 SV=1 && -"]
[1,727678,727748,71,18,0.0497868113071525,0.148994188360157,-0.099207377053005,-91.9659231808869,"CHH","Os01g0113350","promoter","Os01g0113350","Hypothetical conserved gene && sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana OX=3702 GN=SD25 PE=1 SV=1 && PF00314:Thaumatin family|PF00069:Protein kinase domain"]
[1,727678,727748,71,18,0.0497868113071525,0.148994188360157,-0.099207377053005,-91.9659231808869,"CHH","1:727028:729028","CGI_shore"]
[1,1202086,1202189,104,20,0.42783138436091,0.649000241182256,-0.221168856821345,-108.675085386338,"CG","1:1200711:1202711","CGI_shore"]
[1,1202086,1202189,104,20,0.42783138436091,0.649000241182256,-0.221168856821345,-108.675085386338,"CG","Os01g0121400","exon","Os01g0121400","Hypothetical protein && - && -"]
[1,1202086,1202189,104,20,0.42783138436091,0.649000241182256,-0.221168856821345,-108.675085386338,"CG","Os01g0121300","exon","Os01g0121300","Conserved hypothetical protein && - && -"]
[1,1687040,1687099,60,8,0.14811509280292,0.412684843639658,-0.264569750836738,-36.3805493405552,"CG","Os01g0130200","promoter","NRR","Hypothetical conserved gene && sp|Q5ZEF1|NRR_ORYSJ Protein NEGATIVE REGULATOR OF RESISTANCE OS=Oryza sativa subsp. japonica OX=39947 GN=NRR PE=1 SV=1 && -"]
[1,1687040,1687099,60,8,0.14811509280292,0.412684843639658,-0.264569750836738,-36.3805493405552,"CG","1:1685866:1687867","CGI_shore"]
[1,1724304,1724436,133,29,0.0114700341199364,0.084451564536775,-0.0729815304168386,-167.242126991018,"CHH","1:1723399:1725399","CGI_shore"]
[1,1969777,1969827,51,10,0.132533570041618,0.370474454660688,-0.23794088461907,-45.1618800573937,"CHG","1:1966225:1978777","CGI"]
[1,1969777,1969827,51,10,0.132533570041618,0.370474454660688,-0.23794088461907,-45.1618800573937,"CHG","Os01g0136600","promoter","Os01g0136600","Conserved hypothetical protein && - && -"]
[1,2364321,2364422,102,9,0.60903617473789,0.819735872089852,-0.210699697351963,-53.6807846245065,"CHG","1:2361851:2364914","CGI"]
[1,2364321,2364422,102,9,0.60903617473789,0.819735872089852,-0.210699697351963,-53.6807846245065,"CHG","Os01g0143400","promoter","Os01g0143400","Protein of unknown function DUF594 domain containing protein && - && PF04578:Protein of unknown function, DUF594|PF13968:Domain of unknown function (DUF4220)"]
[1,2676029,2676143,115,30,0.0477511585150554,0.161771243674902,-0.114020085159847,-154.553656321276,"CHH","Os01g0149350","promoter","Os01g0149350","NB-ARC domain containing protein && sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 && PF00931:NB-ARC domain|PF13855:Leucine rich repeat|PF18052:Rx N-terminal domain"]
[1,2676029,2676143,115,30,0.0477511585150554,0.161771243674902,-0.114020085159847,-154.553656321276,"CHH","1:2674917:2676918","CGI_shore"]
[1,2702200,2702295,96,7,0.12781873549447,0.316349320293924,-0.188530584799454,-23.5156991423058,"CG","Os01g0149900","exon","Os01g0149900","Conserved hypothetical protein && - && PF14309:Domain of unknown function (DUF4378)"]
[1,2702200,2702295,96,7,0.12781873549447,0.316349320293924,-0.188530584799454,-23.5156991423058,"CG","Os01g0149900","intron","Os01g0149900","Conserved hypothetical protein && - && PF14309:Domain of unknown function (DUF4378)"]
[1,2702200,2702295,96,7,0.12781873549447,0.316349320293924,-0.188530584799454,-23.5156991423058,"CG","1:2702262:2704262","CGI_shore"]
[1,2822500,2822585,86,10,0.437071221055148,0.799135990728607,-0.362064769673459,-68.0745504774233,"CG","Os01g0152300","promoter","H2B.10","Similar to Histone H2B.1 && sp|Q9LGI2|H2B10_ORYSJ Histone H2B.10 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.10 PE=3 SV=1 && PF00125:Core histone H2A/H2B/H3/H4"]
[1,2822500,2822585,86,10,0.437071221055148,0.799135990728607,-0.362064769673459,-68.0745504774233,"CG","1:2820983:2822984","CGI_shore"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","Os01g0153150","exon","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","1:2859975:2861975","CGI_shore"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","1:2861069:2861517","CGI"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","Os01g0153150","utr3","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2861271,2861563,293,28,0.086575659773561,0.441981275649202,-0.355405615875641,-185.373756481562,"CG","1:2861517:2863518","CGI_shore"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","Os01g0153150","exon","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","1:2859975:2861975","CGI_shore"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","1:2861069:2861517","CGI"]
[1,2861315,2861447,133,13,0.0476227079691339,0.298618099876227,-0.250995391907093,-63.5051622475089,"CHG","Os01g0153150","utr3","Os01g0153150","Hypothetical conserved gene && sp|P0C282|SAP18_ORYSJ Zinc finger A20 domain-containing stress-associated protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP18 PE=2 SV=1 && -"]
[1,3180369,3180492,124,12,0.243797607360421,0.563207308512687,-0.319409701152266,-66.2769157820601,"CG","Os01g0160700","promoter","Os01g0160700","Leucine-rich repeat, N-terminal domain containing protein && sp|Q9C637|RLP6_ARATH Receptor-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=RLP6 PE=3 SV=1 && PF08263:Leucine rich repeat N-terminal domain"]
[1,3180369,3180492,124,12,0.243797607360421,0.563207308512687,-0.319409701152266,-66.2769157820601,"CG","1:3180228:3182228","CGI_shore"]
[1,3227143,3227195,53,5,0.352241013024732,0.589823044736765,-0.237582031712032,-21.1869855441621,"CG","1:3226318:3228318","CGI_shore"]
[1,3227143,3227195,53,5,0.352241013024732,0.589823044736765,-0.237582031712032,-21.1869855441621,"CG","Os01g0161200","promoter","Os01g0161200","Hypothetical protein && sp|Q9C637|RLP6_ARATH Receptor-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=RLP6 PE=3 SV=1 && -"]
[1,3227143,3227195,53,5,0.352241013024732,0.589823044736765,-0.237582031712032,-21.1869855441621,"CG","1:3226766:3228767","CGI_shore"]
[1,3372710,3372995,286,97,0.318510034558213,0.524056790913904,-0.205546756355691,-776.552027654235,"CG","1:3372709:3374295","CGI"]
[1,3372712,3372855,144,28,0.192116962092533,0.344305343207688,-0.152188381115155,-133.456416208283,"CHG","1:3372709:3374295","CGI"]
[1,3373308,3373498,191,57,0.153579685923545,0.26666686917229,-0.113087183248745,-305.474955102843,"CG","1:3372709:3374295","CGI"]
[1,3436776,3436979,204,52,0.0629367451750573,0.258335189575392,-0.195398444400335,-354.218727752397,"CHH","1:3435219:3437219","CGI_shore"]
[1,3694312,3694487,176,33,0.637032667349989,0.856400619470241,-0.219367952120252,-131.288104084831,"CG","1:3686885:3695949","CGI"]
[1,3793822,3793999,178,52,0.0661945916713325,0.19693727683481,-0.130742685163477,-252.971849274565,"CHH","1:3792672:3794673","CGI_shore"]
[1,3793822,3793999,178,52,0.0661945916713325,0.19693727683481,-0.130742685163477,-252.971849274565,"CHH","1:3792939:3794939","CGI_shore"]
[1,3793822,3793999,178,52,0.0661945916713325,0.19693727683481,-0.130742685163477,-252.971849274565,"CHH","1:3793448:3794599","CGI"]
[1,3993099,3993335,237,83,0.0131987138606761,0.10189316337095,-0.0886944495102736,-425.549135540885,"CHH","Os01g0177200","intron","Os01g0177200","Similar to Ubiquitin-specific protease 14 && sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana OX=3702 GN=UBP14 PE=1 SV=1 && PF02148:Zn-finger in ubiquitin-hydrolases and other protein|PF17807:Variant UBP zinc finger|PF00627:UBA/TS-N domain|PF00443:Ubiquitin carboxyl-terminal hydrolase"]
[1,4024099,4024208,110,36,0.0502595882213359,0.116476604392235,-0.0662170161708987,-142.033893801338,"CHH","1:4023438:4025439","CGI_shore"]
[1,4152956,4153008,53,20,0.0308790164633488,0.101320144530763,-0.0704411280674144,-102.067266891964,"CHH","1:4151195:4153195","CGI_shore"]
[1,4907292,4907461,170,16,0.612052658440879,0.862205065647803,-0.250152407206923,-90.5019970056784,"CG","1:4906044:4908045","CGI_shore"]
[1,4907292,4907461,170,16,0.612052658440879,0.862205065647803,-0.250152407206923,-90.5019970056784,"CG","1:4906620:4908620","CGI_shore"]
[1,4907292,4907461,170,16,0.612052658440879,0.862205065647803,-0.250152407206923,-90.5019970056784,"CG","Os01g0191700","exon","phosphofructokinase 1","Similar to Pyrophosphate-fructose-6-phosphate 1-phosphotransferase-like protein (Pyrophosphate-dependent phosphofructo-1-kinase-like protein) && sp|Q94AA4|PFKA3_ARATH ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana OX=3702 GN=PFK3 PE=1 SV=1 && PF00365:Phosphofructokinase"]
[1,5136113,5136321,209,44,0.214346655980254,0.422225893670447,-0.207879237690193,-296.424287330262,"CHH","1:5135575:5137575","CGI_shore"]
[1,5143811,5143895,85,13,0.307893715818603,0.586381609538392,-0.278487893719789,-76.3550698642273,"CHG","1:5143626:5144552","CGI"]
[1,5143811,5143895,85,13,0.307893715818603,0.586381609538392,-0.278487893719789,-76.3550698642273,"CHG","1:5143198:5145198","CGI_shore"]
[1,5213121,5213381,261,66,0.210144159597741,0.442110373705146,-0.231966214107406,-354.042778317897,"CG","1:5212972:5213381","CGI"]
[1,5376871,5376930,60,4,0.389396892662999,0.629970509454972,-0.240573616791972,-23.5321777299372,"CG","1:5376376:5378376","CGI_shore"]
[1,5386585,5386713,129,37,0.0117794032485388,0.0979511780348864,-0.0861717747863476,-186.709714156001,"CHH","1:5378377:5388122","CGI"]
[1,5494905,5495004,100,14,0.0411194794408025,0.182104927004511,-0.140985447563709,-64.7080944520405,"CHG","1:5493740:5495741","CGI_shore"]
[1,5569760,5569925,166,40,0.0618116633299947,0.265355440246382,-0.203543776916387,-299.173906530864,"CG","1:5568366:5570367","CGI_shore"]
[1,5569760,5569925,166,40,0.0618116633299947,0.265355440246382,-0.203543776916387,-299.173906530864,"CG","Os01g0201700","promoter","RICE AGAMOUS","Similar to M23 protein (Fragment) && sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS3 PE=2 SV=1 && -"]
[1,5758743,5758811,69,10,0.293248435558552,0.477056969123251,-0.183808533564699,-45.1436731503993,"CHG","1:5757914:5759914","CGI_shore"]
[1,5758743,5758811,69,10,0.293248435558552,0.477056969123251,-0.183808533564699,-45.1436731503993,"CHG","Os01g0205100","promoter","OsWD40-8","WD40 repeat-like domain containing protein && - && -"]
[1,5807725,5807782,58,18,0.0933045079068038,0.28408121268281,-0.190776704776007,-165.994212986922,"CHH","Os01g0206600","promoter","Os01g0206600","Conserved hypothetical protein && - && -"]
[1,5807725,5807782,58,18,0.0933045079068038,0.28408121268281,-0.190776704776007,-165.994212986922,"CHH","Os01g0206650","promoter","Os01g0206650","Hypothetical protein && sp|Q9LWM4|CIPK5_ORYSJ CBL-interacting protein kinase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF03822:NAF domain"]
[1,5807725,5807782,58,18,0.0933045079068038,0.28408121268281,-0.190776704776007,-165.994212986922,"CHH","1:5788713:5808356","CGI"]
[1,6014275,6014361,87,18,0.0094899587104579,0.100551405764477,-0.0910614470540188,-94.9588915166552,"CHH","1:6013509:6015509","CGI_shore"]
[1,6014275,6014361,87,18,0.0094899587104579,0.100551405764477,-0.0910614470540188,-94.9588915166552,"CHH","1:6012601:6014602","CGI_shore"]
[1,6215124,6215208,85,18,0.0143282639855883,0.0957901534498677,-0.0814618894642794,-80.1720600417555,"CHH","1:6214423:6216423","CGI_shore"]
[1,6238467,6238657,191,48,0.219502945160854,0.353779463922142,-0.134276518761288,-220.584514929691,"CHH","1:6238162:6240162","CGI_shore"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","1:6340922:6342922","CGI_shore"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","1:6340973:6341456","CGI"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216000","intron","GDSL ESTERASE/LIPASE PROTEIN 7","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216150","exon","Os01g0216150","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216000","exon","GDSL ESTERASE/LIPASE PROTEIN 7","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6341281,6341456,176,37,0.0272374817539914,0.161861111917095,-0.134623630163104,-218.191838551288,"CG","Os01g0216150","utr5","Os01g0216150","Hypothetical protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && -"]
[1,6351317,6351415,99,14,0.52303672447132,0.897388563460957,-0.374351838989637,-60.8257711956757,"CG","1:6348650:6352767","CGI"]
[1,6351317,6351415,99,14,0.52303672447132,0.897388563460957,-0.374351838989637,-60.8257711956757,"CG","Os01g0216300","promoter","GDSL ESTERASE/LIPASE PROTEIN 8","Lipase, GDSL domain containing protein && sp|Q9FJ45|GDL83_ARATH GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana OX=3702 GN=At5g45910 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,6660060,6660142,83,12,0.652036981915747,0.843470398523572,-0.191433416607824,-57.0340119985488,"CG","Os01g0221600","exon","Os01g0221600","Aluminum-activated malate transporter, Malate-permeable anion channel, Facilitation of malate efflux from cell && sp|Q9LS46|ALMT9_ARATH Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana OX=3702 GN=ALMT9 PE=2 SV=1 && PF11744:Aluminium activated malate transporter"]
[1,6801983,6802082,100,29,0.0828697214570391,0.197022215350113,-0.114152493893074,-169.692478835737,"CHH","1:6801300:6803300","CGI_shore"]
[1,6866930,6867078,149,46,0.0272083245913331,0.147817280012751,-0.120608955421418,-200.835219737864,"CHH","1:6866389:6868389","CGI_shore"]
[1,6866930,6867078,149,46,0.0272083245913331,0.147817280012751,-0.120608955421418,-200.835219737864,"CHH","1:6866413:6866950","CGI"]
[1,6866930,6867078,149,46,0.0272083245913331,0.147817280012751,-0.120608955421418,-200.835219737864,"CHH","1:6866950:6868951","CGI_shore"]
[1,7081379,7081495,117,18,0.35152840141391,0.57447973633888,-0.22295133492497,-96.3613896951358,"CG","1:7071479:7082915","CGI"]
[1,7427178,7427462,285,97,0.119188222493767,0.269308533151765,-0.150120310657998,-680.567096241445,"CG","Os01g0234200","exon","Os01g0234200","Similar to DNA topoisomerase 2 && sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana OX=3702 GN=TOP2 PE=2 SV=2 && PF00204:DNA gyrase B"]
[1,7427178,7427462,285,97,0.119188222493767,0.269308533151765,-0.150120310657998,-680.567096241445,"CG","1:7427115:7431339","CGI"]
[1,7427178,7427462,285,97,0.119188222493767,0.269308533151765,-0.150120310657998,-680.567096241445,"CG","Os01g0234300","promoter","Os01g0234300","Similar to Pectinesterase && sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana OX=3702 GN=PME34 PE=2 SV=1 && PF04043:Plant invertase/pectin methylesterase inhibitor|PF01095:Pectinesterase"]
[1,7525227,7525349,123,26,0.125720196489659,0.295397032943563,-0.169676836453905,-112.366736082245,"CG","1:7523479:7525479","CGI_shore"]
[1,8220847,8220990,144,28,0.379308399895926,0.617460251137865,-0.238151851241939,-142.466167332548,"CHG","1:8219248:8221248","CGI_shore"]
[1,8220847,8220990,144,28,0.379308399895926,0.617460251137865,-0.238151851241939,-142.466167332548,"CHG","1:8219972:8221116","CGI"]
[1,8220887,8221116,230,59,0.58786855270591,0.826195623694623,-0.238327070988713,-425.607032008204,"CG","1:8219248:8221248","CGI_shore"]
[1,8220887,8221116,230,59,0.58786855270591,0.826195623694623,-0.238327070988713,-425.607032008204,"CG","1:8219972:8221116","CGI"]
[1,8261097,8261168,72,6,0.370230625719992,0.753177750691654,-0.382947124971662,-33.1679391601733,"CHG","1:8261007:8263008","CGI_shore"]
[1,8261097,8261168,72,6,0.370230625719992,0.753177750691654,-0.382947124971662,-33.1679391601733,"CHG","1:8261141:8263141","CGI_shore"]
[1,8532754,8532844,91,12,0.110901906929404,0.32360398146582,-0.212702074536416,-76.4947447160578,"CG","1:8522844:8537222","CGI"]
[1,8540471,8540548,78,15,0.171690343991197,0.381700669807208,-0.210010325816011,-69.7564733958993,"CG","Os01g0256400","promoter","Os01g0256400","Similar to Dynein light chain 1 protein DLC-1 (Fragment) && sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1 && PF01221:Dynein light chain type 1"]
[1,8540471,8540548,78,15,0.171690343991197,0.381700669807208,-0.210010325816011,-69.7564733958993,"CG","1:8540016:8541237","CGI"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","Os01g0260950","exon","Os01g0260950","Conserved hypothetical protein && - && -"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","Os01g0260950","utr3","Os01g0260950","Conserved hypothetical protein && - && -"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","1:8784114:8786114","CGI_shore"]
[1,8784350,8784454,105,33,0.0426493543389709,0.1463158735517,-0.103666519212729,-183.708334200921,"CHH","Os01g0260950","intron","Os01g0260950","Conserved hypothetical protein && - && -"]
[1,9221297,9221418,122,16,0.282124929032117,0.519749679089995,-0.237624750057878,-70.9032086361142,"CHG","1:9220919:9222919","CGI_shore"]
[1,9221297,9221418,122,16,0.282124929032117,0.519749679089995,-0.237624750057878,-70.9032086361142,"CHG","1:9221123:9221550","CGI"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","Os01g0269950","utr5","Os01g0269950","Hypothetical protein && sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1 && PF00022:Actin"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","Os01g0269950","exon","Os01g0269950","Hypothetical protein && sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1 && PF00022:Actin"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","Os01g0269900","exon","ARP6","Actin/actin-like family protein && sp|A2WNB0|ARP6_ORYSI Actin-related protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARP6 PE=3 SV=1 && PF00022:Actin"]
[1,9321097,9321229,133,15,0.0730714454438363,0.195810140980452,-0.122738695536616,-65.9599688122142,"CHG","1:9320868:9322868","CGI_shore"]
[1,9390301,9390480,180,50,0.0267115172339909,0.103441635750162,-0.0767301185161706,-215.404672025261,"CHH","Os01g0271500","exon","Os01g0271500","Similar to RUB-activating enzyme (Ubiquitin activating enzyme E1-like protein) && sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=ECR1 PE=1 SV=2 && PF08825:E2 binding domain|PF00899:ThiF family"]
[1,9390301,9390480,180,50,0.0267115172339909,0.103441635750162,-0.0767301185161706,-215.404672025261,"CHH","Os01g0271500","utr3","Os01g0271500","Similar to RUB-activating enzyme (Ubiquitin activating enzyme E1-like protein) && sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=ECR1 PE=1 SV=2 && PF08825:E2 binding domain|PF00899:ThiF family"]
[1,9603781,9603879,99,15,0.271981215643819,0.557914438116206,-0.285933222472387,-74.3237885185566,"CHG","1:9603186:9604460","CGI"]
[1,9697979,9698034,56,9,0.562962559783946,0.796031305732756,-0.23306874594881,-40.2201965477701,"CG","Os01g0276700","intron","Os01g0276700","Similar to Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK) && sp|Q42954|KPYC_TOBAC Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum OX=4097 PE=2 SV=1 && -"]
[1,9697979,9698034,56,9,0.562962559783946,0.796031305732756,-0.23306874594881,-40.2201965477701,"CG","1:9697356:9699356","CGI_shore"]
[1,9731658,9731750,93,7,0.281164943685294,0.638405981236306,-0.357241037551012,-37.3520812695493,"CHG","1:9730842:9732842","CGI_shore"]
[1,10189046,10189329,284,51,0.020732028571368,0.254118414830281,-0.233386386258913,-390.687821134585,"CHH","1:10187603:10189604","CGI_shore"]
[1,10325919,10326248,330,89,0.0929333349482969,0.23167403580633,-0.138740700858033,-507.734273366027,"CG","1:10325061:10326955","CGI"]
[1,10508490,10508581,92,13,0.33660435666486,0.49521582733835,-0.15861147067349,-56.9420793977393,"CHG","Os01g0290600","promoter","Os01g0290600","Similar to isopenicillin N epimerase && sp|Q5JNT6|LCYD2_ORYSJ Putative L-cysteine desulfhydrase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0290600 PE=3 SV=1 && PF00266:Aminotransferase class-V"]
[1,10508490,10508581,92,13,0.33660435666486,0.49521582733835,-0.15861147067349,-56.9420793977393,"CHG","1:10507035:10509036","CGI_shore"]
[1,10508490,10508581,92,13,0.33660435666486,0.49521582733835,-0.15861147067349,-56.9420793977393,"CHG","1:10507861:10510452","CGI"]
[1,10520028,10520191,164,21,0.177579782506099,0.413354241598001,-0.235774459091903,-98.9542909529228,"CG","1:10518328:10520328","CGI_shore"]
[1,10520266,10520363,98,18,0.060221469022827,0.179195595873859,-0.118974126851032,-83.7971588002638,"CG","1:10520329:10523844","CGI"]
[1,10520266,10520363,98,18,0.060221469022827,0.179195595873859,-0.118974126851032,-83.7971588002638,"CG","1:10518328:10520328","CGI_shore"]
[1,10587011,10587095,85,38,0.0359213998465424,0.167231992503198,-0.131310592656656,-214.649040666233,"CHH","1:10585034:10588043","CGI"]
[1,10602050,10602117,68,7,0.199345292194341,0.400488454039332,-0.201143161844991,-29.6353679059802,"CG","1:10601760:10603761","CGI_shore"]
[1,10743992,10744091,100,18,0.0420791384356325,0.229102868645948,-0.187023730210315,-95.8403922070362,"CG","1:10720358:10744666","CGI"]
[1,10907032,10907173,142,18,0.0539772964664124,0.361879784193301,-0.307902487726888,-107.399604365849,"CG","1:10905702:10907702","CGI_shore"]
[1,10907032,10907173,142,18,0.0539772964664124,0.361879784193301,-0.307902487726888,-107.399604365849,"CG","1:10906749:10907128","CGI"]
[1,10907032,10907173,142,18,0.0539772964664124,0.361879784193301,-0.307902487726888,-107.399604365849,"CG","1:10907128:10909129","CGI_shore"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","1:10908330:10910330","CGI_shore"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","Os01g0297700","promoter","USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER 5","Protein of unknown function DUF6, transmembrane domain containing protein && sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana OX=3702 GN=At1g09380 PE=2 SV=1 && PF00892:EamA-like transporter family"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","1:10909511:10911511","CGI_shore"]
[1,10910305,10910721,417,75,0.393195330886274,0.703190432764358,-0.309995101878083,-495.254368664194,"CG","1:10910331:10911083","CGI"]
[1,11138558,11138637,80,9,0.414984693922412,0.75765313183101,-0.342668437908598,-44.0861362283251,"CG","1:11138205:11138707","CGI"]
[1,11307566,11307622,57,29,0.482801222035769,0.738847648544325,-0.256046426508556,-145.743516110633,"CG","Os01g0304500","intron","Os01g0304500","Hypothetical conserved gene && - && -"]
[1,11307566,11307622,57,29,0.482801222035769,0.738847648544325,-0.256046426508556,-145.743516110633,"CG","1:11303124:11308158","CGI"]
[1,11566343,11566439,97,17,0.582428899972321,0.854158073049694,-0.271729173077373,-68.238454797414,"CG","1:11565320:11568135","CGI"]
[1,11740549,11740690,142,36,0.0222851571423342,0.139442058324114,-0.11715690118178,-177.011263575365,"CHH","1:11739455:11741455","CGI_shore"]
[1,11740549,11740690,142,36,0.0222851571423342,0.139442058324114,-0.11715690118178,-177.011263575365,"CHH","Os01g0312500","promoter","PECTIN METHYLESTERASE 3","Similar to Pectinesterase && sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis OX=2711 GN=PECS-1.1 PE=2 SV=1 && PF01095:Pectinesterase"]
[1,12232996,12233095,100,30,0.106547749823134,0.250517136036373,-0.143969386213239,-154.944311169845,"CHH","1:12231233:12233234","CGI_shore"]
[1,12232996,12233095,100,30,0.106547749823134,0.250517136036373,-0.143969386213239,-154.944311169845,"CHH","1:12232673:12234674","CGI_shore"]
[1,12363064,12363301,238,19,0.379634741081255,0.823418098980584,-0.443783357899329,-116.305265481716,"CG","1:12361734:12363735","CGI_shore"]
[1,12363064,12363301,238,19,0.379634741081255,0.823418098980584,-0.443783357899329,-116.305265481716,"CG","Os01g0323775","promoter","Os01g0323775","Hypothetical protein && sp|P93438|METK2_ORYSJ S-adenosylmethionine synthase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SAM2 PE=2 SV=1 && PF00438:S-adenosylmethionine synthetase, N-terminal domain|PF02773:S-adenosylmethionine synthetase, C-terminal domain|PF02772:S-adenosylmethionine synthetase, central domain"]
[1,12363064,12363301,238,19,0.379634741081255,0.823418098980584,-0.443783357899329,-116.305265481716,"CG","1:12362197:12364197","CGI_shore"]
[1,12408065,12408115,51,10,0.133397408021054,0.502799438636352,-0.369402030615298,-51.0820309316729,"CHG","1:12406732:12409115","CGI"]
[1,12408065,12408115,51,10,0.133397408021054,0.502799438636352,-0.369402030615298,-51.0820309316729,"CHG","Os01g0324400","promoter","Os01g0324400","Hypothetical conserved gene && - && -"]
[1,12577402,12577509,108,11,0.0990179568555273,0.690004809183304,-0.590986852327777,-93.6390209554599,"CG","1:12575764:12577764","CGI_shore"]
[1,12577402,12577509,108,11,0.0990179568555273,0.690004809183304,-0.590986852327777,-93.6390209554599,"CG","Os01g0327400","promoter","class III peroxidase 16, Peroxidase 1","Similar to Peroxidase (Fragment) && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12577436,12577619,184,45,0.0148347742235908,0.215624148388494,-0.200789374164903,-344.933670500145,"CHH","1:12575764:12577764","CGI_shore"]
[1,12577436,12577619,184,45,0.0148347742235908,0.215624148388494,-0.200789374164903,-344.933670500145,"CHH","Os01g0327400","promoter","class III peroxidase 16, Peroxidase 1","Similar to Peroxidase (Fragment) && sp|A5H8G4|PER1_MAIZE Peroxidase 1 OS=Zea mays OX=4577 GN=PER1 PE=1 SV=1 && PF00141:Peroxidase"]
[1,12621079,12621136,58,9,0.256690740411,0.506256103918328,-0.249565363507328,-36.8867621510039,"CHG","1:12616775:12622024","CGI"]
[1,12698427,12698561,135,24,0.0379604513305829,0.119809846309749,-0.0818493949791656,-120.802350779355,"CHH","ENSRNA049472779","promoter","U2","U2 spliceosomal RNA && sp|F4J3H7|ZRK7_ARATH Serine/threonine-protein kinase ZRK7 OS=Arabidopsis thaliana OX=3702 GN=ZRK7 PE=2 SV=1 && -"]
[1,12737038,12737088,51,5,0.160291929243011,0.382528938569843,-0.222237009326832,-23.2552602102434,"CG","1:12735198:12737198","CGI_shore"]
[1,12737038,12737088,51,5,0.160291929243011,0.382528938569843,-0.222237009326832,-23.2552602102434,"CG","Os01g0329900","intron","GDSL ESTERASE/LIPASE PROTEIN 14","Similar to Lipase homolog (Fragment) && sp|O80522|GDL2_ARATH GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana OX=3702 GN=At1g09390 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[1,13231959,13232026,68,15,0.272640029877452,0.498248529268217,-0.225608499390764,-59.9836326885685,"CG","1:13232019:13234019","CGI_shore"]
[1,13231959,13232026,68,15,0.272640029877452,0.498248529268217,-0.225608499390764,-59.9836326885685,"CG","1:13220190:13232045","CGI"]
[1,13338411,13338526,116,34,0.0122862819652489,0.10091963176441,-0.0886333497991612,-211.505752023264,"CHH","1:13337508:13339508","CGI_shore"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","1:13423499:13425499","CGI_shore"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","1:13424614:13426615","CGI_shore"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","Os01g0341000","promoter","Os01g0341000","Conserved hypothetical protein && - && -"]
[1,13425296,13425362,67,20,0.00740418225469382,0.067719971594943,-0.0603157893402492,-131.800957971586,"CHH","1:13424637:13426637","CGI_shore"]
[1,13445444,13445553,110,23,0.269907214764995,0.404500880866566,-0.134593666101571,-110.075708254822,"CG","1:13437036:13445754","CGI"]
[1,13445444,13445553,110,23,0.269907214764995,0.404500880866566,-0.134593666101571,-110.075708254822,"CG","1:13445332:13447332","CGI_shore"]
[1,13453185,13453247,63,24,0.217494195207171,0.339031313799358,-0.121537118592186,-98.916552354739,"CG","1:13452102:13453620","CGI"]
[1,13589142,13589456,315,77,0.5625111513842,0.850613855075974,-0.288102703691773,-488.337356809224,"CG","1:13589107:13590837","CGI"]
[1,13589142,13589456,315,77,0.5625111513842,0.850613855075974,-0.288102703691773,-488.337356809224,"CG","1:13589244:13591244","CGI_shore"]
[1,13710412,13710495,84,15,0.0789792123857062,0.425472819916026,-0.34649360753032,-93.2181205786963,"CHG","1:13708548:13710549","CGI_shore"]
[1,13710412,13710495,84,15,0.0789792123857062,0.425472819916026,-0.34649360753032,-93.2181205786963,"CHG","1:13710349:13711075","CGI"]
[1,13837202,13837379,178,51,0.0169586999196974,0.0845831076493194,-0.067624407729622,-252.93717925922,"CHH","1:13836081:13838081","CGI_shore"]
[1,14154273,14154327,55,4,0.0730931625977318,0.24320551363178,-0.170112351034048,-21.5160845837265,"CHG","1:14153675:14155676","CGI_shore"]
[1,14455631,14455689,59,14,0.171583052157311,0.340707608739179,-0.169124556581868,-77.4887801654421,"CHH","1:14454169:14456170","CGI_shore"]
[1,14749410,14749526,117,11,0.627007824947537,0.837175365993555,-0.210167541046018,-49.6345759967258,"CG","1:14747521:14749521","CGI_shore"]
[1,14749410,14749526,117,11,0.627007824947537,0.837175365993555,-0.210167541046018,-49.6345759967258,"CG","1:14749522:14750040","CGI"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","1:14865423:14871132","CGI"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","1:14871132:14873133","CGI_shore"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","1:14873966:14875966","CGI_shore"]
[1,14870969,14874660,3692,27,0.370891062730684,0.785783068775147,-0.414892006044464,-155.199885420265,"CHG","Os01g0364400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 35","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,14870970,14871031,62,18,0.0142790498929683,0.146799750826388,-0.13252070093342,-93.7646925266224,"CHH","1:14865423:14871132","CGI"]
[1,14870970,14871031,62,18,0.0142790498929683,0.146799750826388,-0.13252070093342,-93.7646925266224,"CHH","Os01g0364400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 35","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,14871026,14871132,107,36,0.496860023635351,0.891489400128327,-0.394629376492976,-226.977074570051,"CG","1:14865423:14871132","CGI"]
[1,14871026,14871132,107,36,0.496860023635351,0.891489400128327,-0.394629376492976,-226.977074570051,"CG","Os01g0364400","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 35","Protein kinase, catalytic domain domain containing protein && sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 && PF00069:Protein kinase domain|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[1,15016170,15016235,66,4,0.227476463127409,0.642008524658765,-0.414532061531355,-23.2317788055218,"CHG","1:15014964:15016965","CGI_shore"]
[1,15113556,15113624,69,20,0.69266417528083,0.868159543658829,-0.175495368378,-93.5874298895234,"CG","1:15111215:15113685","CGI"]
[1,15113556,15113624,69,20,0.69266417528083,0.868159543658829,-0.175495368378,-93.5874298895234,"CG","1:15112351:15114351","CGI_shore"]
[1,15113556,15113624,69,20,0.69266417528083,0.868159543658829,-0.175495368378,-93.5874298895234,"CG","Os01g0368600","exon","Os01g0368600","Conserved hypothetical protein && - && -"]
[1,15146864,15146942,79,16,0.181505339535727,0.312398348855894,-0.130893009320167,-83.7196745030152,"CHH","Os01g0369200","intron","Os01g0369200","Component of cullin-RING E3 ubiquitin ligase (CRL) complex, Salt/drought stress response, Cold stress respons && sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 && PF00888:Cullin family|PF10557:Cullin protein neddylation domain"]
[1,15146864,15146942,79,16,0.181505339535727,0.312398348855894,-0.130893009320167,-83.7196745030152,"CHH","1:15146763:15148764","CGI_shore"]
[1,15188926,15189052,127,11,0.363390932161014,0.665520546315439,-0.302129614154425,-57.4016903912305,"CG","Os01g0369900","promoter","12-OXOPHYTODIENOATE REDUCTASE 10","Similar to 12-oxo-phytodienoic acid reductase6 && sp|Q0JMR0|OPR10_ORYSJ Putative 12-oxophytodienoate reductase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=OPR10 PE=2 SV=1 && -"]
[1,15188926,15189052,127,11,0.363390932161014,0.665520546315439,-0.302129614154425,-57.4016903912305,"CG","1:15188385:15190386","CGI_shore"]
[1,15284308,15284361,54,7,0.2780684292813,0.632264981377602,-0.354196552096302,-40.5580422495396,"CHG","1:15282788:15284621","CGI"]
[1,15284308,15284361,54,7,0.2780684292813,0.632264981377602,-0.354196552096302,-40.5580422495396,"CHG","Os01g0371200","promoter","PHI GLUTATHIONE S-TRANSFERASE 1","Similar to Glutathione-S-transferase 19E50 && sp|O65857|GSTF1_ORYSJ Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica OX=39947 GN=GSTF1 PE=1 SV=2 && PF00043:Glutathione S-transferase, C-terminal domain|PF02798:Glutathione S-transferase, N-terminal domain"]
[1,15284308,15284361,54,7,0.2780684292813,0.632264981377602,-0.354196552096302,-40.5580422495396,"CHG","1:15284012:15286012","CGI_shore"]
[1,15332389,15332481,93,11,0.587425620222453,0.799378542181999,-0.211952921959545,-50.065351175492,"CG","1:15332025:15332989","CGI"]
[1,15332389,15332481,93,11,0.587425620222453,0.799378542181999,-0.211952921959545,-50.065351175492,"CG","Os01g0372100","intron","Os01g0372100","Hypothetical gene && - && -"]
[1,15332389,15332481,93,11,0.587425620222453,0.799378542181999,-0.211952921959545,-50.065351175492,"CG","Os01g0372100","exon","Os01g0372100","Hypothetical gene && - && -"]
[1,15513607,15513728,122,44,0.116069818628592,0.378127311090113,-0.262057492461522,-242.878930402819,"CHH","1:15513343:15540713","CGI"]
[1,15881202,15881259,58,10,0.142408430109704,0.394955256426504,-0.2525468263168,-56.9110958174493,"CG","1:15880157:15882158","CGI_shore"]
[1,15881202,15881259,58,10,0.142408430109704,0.394955256426504,-0.2525468263168,-56.9110958174493,"CG","1:15880691:15881417","CGI"]
[1,15881233,15881364,132,19,0.19538004166774,0.46634221360074,-0.270962171933,-91.6130521637189,"CHG","1:15880157:15882158","CGI_shore"]
[1,15881233,15881364,132,19,0.19538004166774,0.46634221360074,-0.270962171933,-91.6130521637189,"CHG","1:15880691:15881417","CGI"]
[1,15956955,15957023,69,4,0.19837374318541,0.566654775863263,-0.368281032677853,-17.5042360181797,"CHG","1:15955853:15957854","CGI_shore"]
[1,15956955,15957023,69,4,0.19837374318541,0.566654775863263,-0.368281032677853,-17.5042360181797,"CHG","1:15956876:15958876","CGI_shore"]
[1,15971507,15971618,112,16,0.0209313537873402,0.205287263335801,-0.184355909548461,-104.953464438502,"CHH","1:15971612:15973612","CGI_shore"]
[1,15997441,15997510,70,28,0.00863982844775331,0.0813715088519622,-0.0727316804042089,-134.238512120995,"CHH","1:15995477:15997477","CGI_shore"]
[1,15997441,15997510,70,28,0.00863982844775331,0.0813715088519622,-0.0727316804042089,-134.238512120995,"CHH","1:15997478:15998679","CGI"]
[1,16342223,16342360,138,46,0.0462267020752259,0.185674634970705,-0.139447932895479,-250.621570395424,"CHH","1:16340402:16342402","CGI_shore"]
[1,16342223,16342360,138,46,0.0462267020752259,0.185674634970705,-0.139447932895479,-250.621570395424,"CHH","1:16340834:16342835","CGI_shore"]
[1,16342577,16342676,100,27,0.461903008834312,0.762106946560607,-0.300203937726295,-125.972969890986,"CG","1:16340834:16342835","CGI_shore"]
[1,16342577,16342676,100,27,0.461903008834312,0.762106946560607,-0.300203937726295,-125.972969890986,"CG","1:16342403:16343012","CGI"]
[1,16684860,16684942,83,9,0.121247446389013,0.244305973044476,-0.123058526655463,-42.5750377773648,"CG","1:16684007:16684982","CGI"]
[1,17147976,17148031,56,7,0.38566552854916,0.657919475078672,-0.272253946529513,-29.3478877219174,"CHG","1:17146891:17148891","CGI_shore"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","1:18060996:18062996","CGI_shore"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","1:18061490:18063490","CGI_shore"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","Os01g0512400","utr3","Os01g0512400","Conserved hypothetical protein && - && -"]
[1,18062427,18062487,61,7,0.564296137267831,0.821666727365771,-0.25737059009794,-31.9195597693196,"CG","Os01g0512400","exon","Os01g0512400","Conserved hypothetical protein && - && -"]
[1,18080425,18080572,148,32,0.0529554827970711,0.246998882552686,-0.194043399755615,-165.295465549757,"CHH","1:18079961:18083890","CGI"]
[1,18211417,18211509,93,11,0.164758501678457,0.618470724433113,-0.453712222754656,-55.601926026707,"CHG","1:18210421:18212422","CGI_shore"]
[1,18248043,18248180,138,21,0.305040277366636,0.638961356330123,-0.333921078963487,-93.0092607193478,"CHG","1:18246732:18248733","CGI_shore"]
[1,18248043,18248180,138,21,0.305040277366636,0.638961356330123,-0.333921078963487,-93.0092607193478,"CHG","1:18247178:18249178","CGI_shore"]
[1,18491182,18491303,122,38,0.435753606038281,0.78224673672522,-0.346493130686939,-221.219327753542,"CG","1:18490294:18492303","CGI"]
[1,18491555,18491717,163,32,0.504477109404277,0.77669865596567,-0.272221546561393,-157.751546783393,"CG","1:18490294:18492303","CGI"]
[1,18698066,18698230,165,76,0.105478939712882,0.290172011912335,-0.184693072199453,-465.120673644813,"CHH","1:18698036:18700036","CGI_shore"]
[1,18698066,18698230,165,76,0.105478939712882,0.290172011912335,-0.184693072199453,-465.120673644813,"CHH","1:18698058:18700059","CGI_shore"]
[1,18918195,18918292,98,23,0.551527682416863,0.786645275518353,-0.235117593101489,-96.8681742803671,"CG","1:18918153:18918606","CGI"]
[1,19394741,19394910,170,31,0.0440730540601061,0.163228886351092,-0.119155832290986,-149.408436375388,"CG","Os01g0534900","exon","HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1","Similar to Hv711N16.16 (Fragment) && sp|Q5XEZ5|CSC1_ARATH Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana OX=3702 GN=CSC1 PE=1 SV=1 && PF02714:Calcium-dependent channel, 7TM region, putative phosphate|PF13967:Late exocytosis, associated with Golgi transport|PF14703:Cytosolic domain of 10TM putative phosphate transporter"]
[1,19395264,19395345,82,14,0.0461449021012873,0.151758859322955,-0.105613957221668,-73.2138554038129,"CHH","Os01g0534900","intron","HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 1.1","Similar to Hv711N16.16 (Fragment) && sp|Q5XEZ5|CSC1_ARATH Calcium permeable stress-gated cation channel 1 OS=Arabidopsis thaliana OX=3702 GN=CSC1 PE=1 SV=1 && PF02714:Calcium-dependent channel, 7TM region, putative phosphate|PF13967:Late exocytosis, associated with Golgi transport|PF14703:Cytosolic domain of 10TM putative phosphate transporter"]
[1,19442048,19442108,61,14,0.570043160650798,0.859567439162696,-0.289524278511898,-66.1601398838325,"CG","1:19427804:19442960","CGI"]
[1,19508481,19508588,108,31,0.0619876742261535,0.159019704774652,-0.0970320305484987,-159.961339980949,"CHH","1:19508403:19510404","CGI_shore"]
[1,19508481,19508588,108,31,0.0619876742261535,0.159019704774652,-0.0970320305484987,-159.961339980949,"CHH","Os01g0536400","promoter","Os01g0536400","Isopenicillin N synthase family protein && sp|Q94A78|ACCH4_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g03400 PE=2 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[1,19710072,19710422,351,23,0.11017197674313,0.491049178990648,-0.380877202247518,-194.951886361938,"CG","1:19709635:19710625","CGI"]
[1,19710241,19710304,64,7,0.0259892778772169,0.287814287441065,-0.261825009563848,-36.7129940383287,"CHG","1:19709635:19710625","CGI"]
[1,19980701,19980791,91,17,0.491444220377659,0.732942752077558,-0.2414985316999,-77.6928685942639,"CG","1:19980082:19983370","CGI"]
[1,20147320,20147390,71,27,0.0357080734340566,0.198023284892119,-0.162315211458062,-174.626736174548,"CHH","1:20146712:20148713","CGI_shore"]
[1,20147320,20147390,71,27,0.0357080734340566,0.198023284892119,-0.162315211458062,-174.626736174548,"CHH","1:20147123:20148123","CGI"]
[1,20248164,20248231,68,28,0.0531125115816187,0.142624111182132,-0.0895115996005135,-151.261812658328,"CHH","1:20247908:20249909","CGI_shore"]
[1,20255996,20256101,106,16,0.228272045919029,0.488731016015738,-0.260458970096709,-86.9738996313218,"CHG","Os01g0545550","promoter","Os01g0545550","Hypothetical protein && sp|O81906|B120_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana OX=3702 GN=B120 PE=2 SV=1 && PF01657:Salt stress response/antifungal"]
[1,20600036,20600100,65,15,0.338027024879831,0.50581193182783,-0.167784906947998,-59.2188538884679,"CG","Os01g0550300","exon","Os01g0550300","Similar to Gda-1 protein && sp|C6TAQ0|NRPB_SOYBN DCD domain-containing protein NRP-B OS=Glycine max OX=3847 GN=NRP-B PE=2 SV=1 && PF10539:Development and cell death domain"]
[1,20634883,20634954,72,25,0.0136227336728943,0.0970041465459697,-0.0833814128730755,-151.814113474874,"CHH","1:20632942:20634942","CGI_shore"]
[1,20634883,20634954,72,25,0.0136227336728943,0.0970041465459697,-0.0833814128730755,-151.814113474874,"CHH","1:20634943:20635692","CGI"]
[1,20670127,20670223,97,14,0.602442348655996,0.873846878961964,-0.271404530305968,-71.317424028167,"CG","Os01g0551100","intron","Os01g0551100","Ribonuclease III domain containing protein && sp|Q5JK90|RTL1_ORYSJ Ribonuclease 3-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0551100 PE=2 SV=1 && PF00636:Ribonuclease III domain"]
[1,20670127,20670223,97,14,0.602442348655996,0.873846878961964,-0.271404530305968,-71.317424028167,"CG","1:20668519:20670519","CGI_shore"]
[1,21204658,21204756,99,17,0.559359817633057,0.89994102262011,-0.340581204987053,-101.100387986732,"CG","1:21204520:21206520","CGI_shore"]
[1,21204658,21204756,99,17,0.559359817633057,0.89994102262011,-0.340581204987053,-101.100387986732,"CG","1:21204599:21204902","CGI"]
[1,21240498,21240599,102,11,0.275939862626745,0.513713403866221,-0.237773541239476,-44.7039749623747,"CG","1:21239051:21241051","CGI_shore"]
[1,21240498,21240599,102,11,0.275939862626745,0.513713403866221,-0.237773541239476,-44.7039749623747,"CG","1:21239882:21241883","CGI_shore"]
[1,21280297,21280398,102,17,0.28147453456337,0.604014524410918,-0.322539989847548,-84.3863385146069,"CHG","1:21280292:21281246","CGI"]
[1,21310347,21310403,57,21,0.565245659988964,0.804014988114491,-0.238769328125527,-99.3719276450338,"CG","1:21309906:21310576","CGI"]
[1,21360642,21360794,153,28,0.175261151396502,0.393749496705944,-0.218488345309441,-130.258333912201,"CHG","Os01g0561950","promoter","Os01g0561950","Hypothetical protein && - && PF03140:Plant protein of unknown function"]
[1,21360642,21360794,153,28,0.175261151396502,0.393749496705944,-0.218488345309441,-130.258333912201,"CHG","1:21360588:21375938","CGI"]
[1,21378661,21378858,198,24,0.271735653558921,0.499891216833844,-0.228155563274923,-123.652115360956,"CHG","1:21377828:21379828","CGI_shore"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","Os01g0564400","promoter","Os01g0564400","Conserved hypothetical protein && - && -"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","1:21537751:21539752","CGI_shore"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","1:21539399:21539687","CGI"]
[1,21539433,21539514,82,19,0.549155559197976,0.789435037982174,-0.240279478784198,-76.2307085897735,"CG","Os01g0564300","intron","FK506 binding protein 46","Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein && sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FKBP65 PE=1 SV=1 && PF00254:FKBP-type peptidyl-prolyl cis-trans isomerase"]
[1,21680903,21680996,94,41,0.694363148709745,0.896732096095787,-0.202368947386042,-222.019702227791,"CG","1:21680422:21681384","CGI"]
[1,21841407,21841457,51,13,0.0223700757055094,0.112765848821309,-0.0903957731157994,-72.4399562655905,"CHH","1:21839983:21841983","CGI_shore"]
[1,22415622,22415820,199,13,0.360106014208679,0.723852871583898,-0.36374685737522,-75.2946991540269,"CG","1:22414767:22416767","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","1:22433361:22435361","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","1:22433678:22435679","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","1:22433900:22435900","CGI_shore"]
[1,22434143,22434231,89,14,0.24433786465535,0.574577321420451,-0.330239456765101,-100.764916790758,"CG","Os01g0579800","promoter","Os01g0579800","Conserved hypothetical protein && - && -"]
[1,22473401,22473477,77,9,0.0758522316927435,0.200392800014955,-0.124540568322211,-45.6886074720416,"CG","Os01g0580300","utr3","Os01g0580300","Conserved hypothetical protein && - && -"]
[1,22473401,22473477,77,9,0.0758522316927435,0.200392800014955,-0.124540568322211,-45.6886074720416,"CG","Os01g0580300","exon","Os01g0580300","Conserved hypothetical protein && - && -"]
[1,22473401,22473477,77,9,0.0758522316927435,0.200392800014955,-0.124540568322211,-45.6886074720416,"CG","1:22473296:22474343","CGI"]
[1,22633815,22633866,52,16,0.0398725961143837,0.142885293472666,-0.103012697358282,-72.6594807209194,"CHH","1:22633155:22642655","CGI"]
[1,22633815,22633866,52,16,0.0398725961143837,0.142885293472666,-0.103012697358282,-72.6594807209194,"CHH","Os01g0583300","intron","Os_F0727","Zinc finger, C2H2, LYAR-type domain containing protein && - && -"]
[1,23518482,23518604,123,31,0.0789851770696335,0.269000410097805,-0.190015233028171,-160.838174800041,"CHH","1:23518384:23520385","CGI_shore"]
[1,23722569,23722729,161,16,0.352399252255135,0.636075622607477,-0.283676370352342,-96.382755786166,"CG","1:23720706:23722707","CGI_shore"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","1:23877940:23879940","CGI_shore"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","Os01g0606000","exon","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","1:23878274:23880275","CGI_shore"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","Os01g0606000","intron","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23878253,23878314,62,7,0.266817785499532,0.506156218303067,-0.239338432803534,-35.288387054111,"CG","1:23871482:23878274","CGI"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","1:23877940:23879940","CGI_shore"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","Os01g0606000","exon","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","1:23878274:23880275","CGI_shore"]
[1,23878285,23878374,90,29,0.0741935931588208,0.218622520314638,-0.144428927155817,-203.236877971804,"CHH","Os01g0606000","intron","SWEET6A","MtN3 and saliva related transmembrane protein family protein && sp|Q8LR09|SWT6A_ORYSJ Bidirectional sugar transporter SWEET6a OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET6A PE=3 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[1,23919432,23919684,253,92,0.065355499386142,0.229796611451889,-0.164441112065747,-759.670367047345,"CG","Os01g0607100","exon","ARABINOGALACTAN PROTEIN 29","Bifunctional inhibitor/plant lipid transfer protein/seed storage domain containing protein && sp|F4JIG1|LTG25_ARATH Non-specific lipid transfer protein GPI-anchored 25 OS=Arabidopsis thaliana OX=3702 GN=LTPG25 PE=3 SV=1 && -"]
[1,23919432,23919684,253,92,0.065355499386142,0.229796611451889,-0.164441112065747,-759.670367047345,"CG","1:23918918:23924193","CGI"]
[1,23952891,23952949,59,7,0.669015088441225,0.849802264871309,-0.180787176430084,-29.0529094230518,"CHG","Os01g0607600","intron","OsWD40-18","WD40 repeat domain containing protein && sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 && PF08513:LisH"]
[1,23952891,23952949,59,7,0.669015088441225,0.849802264871309,-0.180787176430084,-29.0529094230518,"CHG","Os01g0607600","exon","OsWD40-18","WD40 repeat domain containing protein && sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 && PF08513:LisH"]
[1,24162954,24163020,67,17,0.00562562467657671,0.0845777044648987,-0.0789520797883219,-99.8959722812878,"CHH","Os01g0610600","promoter","Os01g0610600","Endonuclease/exonuclease/phosphatase domain containing protein && sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CCR4-6 PE=2 SV=2 && PF03372:Endonuclease/Exonuclease/phosphatase family"]
[1,24162954,24163020,67,17,0.00562562467657671,0.0845777044648987,-0.0789520797883219,-99.8959722812878,"CHH","1:24162702:24164703","CGI_shore"]
[1,24450525,24450617,93,17,0.0544678522073453,0.180785101578036,-0.126317249370691,-99.1037875048053,"CHH","1:24450129:24452129","CGI_shore"]
[1,24450697,24450848,152,28,0.0911074662378093,0.252844988512789,-0.16173752227498,-138.437689740086,"CHH","1:24450129:24452129","CGI_shore"]
[1,24478680,24478879,200,27,0.108714170808625,0.689944932058635,-0.58123076125001,-227.27502317959,"CG","1:24477978:24479231","CGI"]
[1,24478680,24478879,200,27,0.108714170808625,0.689944932058635,-0.58123076125001,-227.27502317959,"CG","Os01g0616400","promoter","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 8","Similar to Floral homeotic protein HUA1 && sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0616400 PE=2 SV=2 && PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[1,24478680,24478879,200,27,0.108714170808625,0.689944932058635,-0.58123076125001,-227.27502317959,"CG","1:24478869:24480869","CGI_shore"]
[1,24548224,24548289,66,25,0.0179828135784736,0.0457231541278821,-0.0277403405494085,-100.304619361875,"CHH","1:24546573:24548573","CGI_shore"]
[1,24548224,24548289,66,25,0.0179828135784736,0.0457231541278821,-0.0277403405494085,-100.304619361875,"CHH","Os01g0617500","promoter","Os01g0617500","Tetratricopeptide-like helical domain containing protein && sp|Q8VZM1|NAA15_ARATH N-terminal acetyltransferase A complex auxiliary subunit NAA15 OS=Arabidopsis thaliana OX=3702 GN=NAA15 PE=1 SV=1 && PF13414:TPR repeat|PF12569:NMDA receptor-regulated protein 1"]
[1,24548224,24548289,66,25,0.0179828135784736,0.0457231541278821,-0.0277403405494085,-100.304619361875,"CHH","1:24546821:24548822","CGI_shore"]
[1,24688902,24689000,99,18,0.0171938500741499,0.336754572727665,-0.319560722653515,-100.418831819186,"CHH","1:24687993:24689994","CGI_shore"]
[1,24688902,24689000,99,18,0.0171938500741499,0.336754572727665,-0.319560722653515,-100.418831819186,"CHH","1:24688250:24690250","CGI_shore"]
[1,24772548,24772603,56,15,0.00567510335062249,0.10271283820107,-0.0970377348504478,-112.668843786803,"CHH","1:24770633:24774589","CGI"]
[1,24772548,24772603,56,15,0.00567510335062249,0.10271283820107,-0.0970377348504478,-112.668843786803,"CHH","Os01g0621500","promoter","Os01g0621500","Conserved hypothetical protein && - && -"]
[1,24772557,24772774,218,39,0.0254569543120438,0.150252383173185,-0.124795428861141,-182.445743822658,"CHG","1:24770633:24774589","CGI"]
[1,24772557,24772774,218,39,0.0254569543120438,0.150252383173185,-0.124795428861141,-182.445743822658,"CHG","Os01g0621500","promoter","Os01g0621500","Conserved hypothetical protein && - && -"]
[1,24772648,24772775,128,41,0.073216737845526,0.178821969710325,-0.105605231864799,-177.021872699358,"CG","1:24770633:24774589","CGI"]
[1,24772648,24772775,128,41,0.073216737845526,0.178821969710325,-0.105605231864799,-177.021872699358,"CG","Os01g0621500","promoter","Os01g0621500","Conserved hypothetical protein && - && -"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","1:24898616:24900616","CGI_shore"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","Os01g0623750","promoter","Os01g0623750","Hypothetical protein && sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","Os01g0623550","promoter","Os01g0623550","Hypothetical protein && sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus OX=9031 GN=SPAST PE=2 SV=2 && -"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","Os01g0623600","intron","Os01g0623600","Glycoside hydrolase, family 28 protein && sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,24900562,24900644,83,25,0.00477135043216775,0.098654475007643,-0.0938831245754752,-165.045039497825,"CHH","1:24900617:24910420","CGI"]
[1,25159007,25159090,84,11,0.0477444572243898,0.206582983355562,-0.158838526131173,-55.1412802858419,"CG","1:25157694:25159951","CGI"]
[1,25159007,25159090,84,11,0.0477444572243898,0.206582983355562,-0.158838526131173,-55.1412802858419,"CG","Os01g0629900","promoter","MAP kinase 20-1","Similar to Blast and wounding induced mitogen-activated protein kinase && sp|Q5ZCI1|MPK10_ORYSJ Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK10 PE=2 SV=2 && PF00069:Protein kinase domain"]
[1,25580038,25580146,109,23,0.104270387548575,0.217464466668572,-0.113194079119997,-104.002501249862,"CG","Os01g0637500","promoter","Os01g0637500","Similar to polygalacturonase && sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,25580038,25580146,109,23,0.104270387548575,0.217464466668572,-0.113194079119997,-104.002501249862,"CG","1:25572135:25581561","CGI"]
[1,25580442,25580600,159,50,0.11840858997109,0.174318616912437,-0.0559100269413472,-226.48526143431,"CG","Os01g0637500","promoter","Os01g0637500","Similar to polygalacturonase && sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[1,25580442,25580600,159,50,0.11840858997109,0.174318616912437,-0.0559100269413472,-226.48526143431,"CG","1:25572135:25581561","CGI"]
[1,25647666,25647769,104,19,0.037676337093564397,0.185599544578647,-0.147923207485083,-144.0074849221,"CHH","1:25647001:25648645","CGI"]
[1,25647666,25647769,104,19,0.037676337093564397,0.185599544578647,-0.147923207485083,-144.0074849221,"CHH","Os01g0639200","promoter","suppressor of BTH-induced, NH1-mediated lesion mimic 6","Cinnamoyl-CoA reductase-like gene family member, Defense respons && sp|Q0JKZ0|SNL6_ORYSJ Cinnamoyl-CoA reductase-like SNL6 OS=Oryza sativa subsp. japonica OX=39947 GN=SNL6 PE=3 SV=1 && PF01073:3-beta hydroxysteroid dehydrogenase/isomerase family"]
[1,25665084,25665297,214,84,0.492462097642132,0.819791838655468,-0.327329741013337,-508.323827256561,"CG","1:25663507:25665508","CGI_shore"]
[1,25665084,25665297,214,84,0.492462097642132,0.819791838655468,-0.327329741013337,-508.323827256561,"CG","1:25664914:25666768","CGI"]
[1,25816661,25816765,105,53,0.0570831578900176,0.180120456767466,-0.123037298877448,-265.488833898673,"CHH","1:25815107:25817351","CGI"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","1:26117700:26119701","CGI_shore"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","Os01g0648225","promoter","Os01g0648225","Hypothetical protein && sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica OX=39947 GN=AKT1 PE=2 SV=1 && -"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","1:26118562:26120945","CGI"]
[1,26118953,26119055,103,28,0.73379870856303,0.86821635826023,-0.1344176496972,-123.151258388541,"CG","Os01g0647850","exon","Os01g0647850","Hypothetical conserved gene && - && -"]
[1,26763473,26763563,91,18,0.544410165271779,0.815115821670869,-0.27070565639909,-92.0072376728556,"CG","1:26762004:26763874","CGI"]
[1,27163713,27163779,67,18,0.0125819157171968,0.118878281631047,-0.10629636591385,-81.8373878745843,"CHH","1:27163051:27163879","CGI"]
[1,27163713,27163779,67,18,0.0125819157171968,0.118878281631047,-0.10629636591385,-81.8373878745843,"CHH","1:27163472:27165472","CGI_shore"]
[1,27407843,27407949,107,19,0.165882615151377,0.528849313417656,-0.362966698266278,-94.8438667487816,"CHG","1:27392941:27476746","CGI"]
[1,28517739,28517794,56,6,0.253101879598402,0.708363336265125,-0.455261456666723,-29.1616844684412,"CG","1:28515947:28517947","CGI_shore"]
[1,29078056,29078131,76,15,0.0181474290002689,0.102530222697787,-0.084382793697518,-73.4687752241984,"CHH","Os01g0702000","promoter","OsBBD1","Protein of unknown function DUF151 domain containing protein && sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BBD1 PE=2 SV=1 && PF02577:Bifunctional nuclease"]
[1,29661581,29661658,78,13,0.580564381389602,0.83001211929319,-0.249447737903588,-65.8174131354324,"CG","1:29661168:29663169","CGI_shore"]
[1,29902825,29902883,59,18,0.07234583960127,0.193301007015782,-0.120955167414512,-87.7017072022112,"CHH","1:29896648:29913156","CGI"]
[1,30090700,30090791,92,8,0.178279090689114,0.510902459720015,-0.332623369030901,-38.8414438795513,"CHG","Os01g0721700","promoter","Os01g0721700","Hypothetical genes && - && -"]
[1,30090700,30090791,92,8,0.178279090689114,0.510902459720015,-0.332623369030901,-38.8414438795513,"CHG","1:30088910:30090911","CGI_shore"]
[1,30090700,30090791,92,8,0.178279090689114,0.510902459720015,-0.332623369030901,-38.8414438795513,"CHG","Os01g0721800","promoter","Os01g0721800","Protein kinase-like domain containing protein && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && PF18052:Rx N-terminal domain"]
[1,30425625,30425700,76,6,0.193597005886428,0.709455769410791,-0.515858763524363,-28.8519619012222,"CG","Os01g0729900","promoter","Os01g0729900","Conserved hypothetical protein && - && -"]
[1,30425625,30425700,76,6,0.193597005886428,0.709455769410791,-0.515858763524363,-28.8519619012222,"CG","1:30421884:30428057","CGI"]
[1,30707186,30707292,107,24,0.0389133109843071,0.220773541599424,-0.181860230615117,-119.942604653413,"CHH","1:30705906:30707906","CGI_shore"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","Os01g0742766","utr3","Os01g0742766","Hypothetical conserved gene && - && PF15925:SOSS complex subunit C"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","Os01g0742766","exon","Os01g0742766","Hypothetical conserved gene && - && PF15925:SOSS complex subunit C"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","Os01g0742500","promoter","HEXOKINASE-6","Similar to Hexokinase && sp|Q8LQ68|HXK6_ORYSJ Hexokinase-6 OS=Oryza sativa subsp. japonica OX=39947 GN=HXK6 PE=1 SV=1 && PF03727:Hexokinase|PF00349:Hexokinase"]
[1,31015877,31015975,99,8,0.363995579999445,0.686553354425129,-0.322557774425684,-43.3607678213644,"CG","1:31014724:31016725","CGI_shore"]
[1,31212098,31212230,133,26,0.0146066957061009,0.215781910122342,-0.201175214416241,-136.988397311927,"CHH","1:31210439:31212439","CGI_shore"]
[1,31234698,31234751,54,9,0.205556964402114,0.328190738053399,-0.122633773651285,-41.7914758801162,"CG","Target=RETROFIT_I-int:1-2318;Class=LTR/Copia","repeat"]
[1,31356500,31356610,111,20,0.0270135021591443,0.0942763082563388,-0.0672628060971945,-91.0963225568798,"CHH","1:31355156:31357156","CGI_shore"]
[1,31356500,31356610,111,20,0.0270135021591443,0.0942763082563388,-0.0672628060971945,-91.0963225568798,"CHH","Os01g0748950","intron","Os01g0748950","Similar to predicted protein && sp|Q93VV5|PTR16_ARATH Protein NRT1/ PTR FAMILY 4.3 OS=Arabidopsis thaliana OX=3702 GN=NPF4.3 PE=2 SV=1 && PF00854:POT family"]
[1,31536587,31536681,95,9,0.335292657898232,0.741409117190929,-0.406116459292696,-38.8393927032288,"CHG","1:31534702:31536702","CGI_shore"]
[1,32229333,32229551,219,16,0.556226357726518,0.843174766332411,-0.286948408605894,-100.019860160862,"CG","Os01g0764900","intron","Os01g0764900","Similar to Formamidase && sp|Q50228|FMDA_METME Formamidase OS=Methylophilus methylotrophus OX=17 GN=fmdA PE=1 SV=1 && PF03069:Acetamidase/Formamidase family"]
[1,32229333,32229551,219,16,0.556226357726518,0.843174766332411,-0.286948408605894,-100.019860160862,"CG","Os01g0764900","exon","Os01g0764900","Similar to Formamidase && sp|Q50228|FMDA_METME Formamidase OS=Methylophilus methylotrophus OX=17 GN=fmdA PE=1 SV=1 && PF03069:Acetamidase/Formamidase family"]
[1,32280357,32280416,60,9,0.824953451628168,0.886496257837702,-0.0615428062095342,-33.6475158719401,"CG","1:32277056:32281552","CGI"]
[1,32280357,32280416,60,9,0.824953451628168,0.886496257837702,-0.0615428062095342,-33.6475158719401,"CG","1:32280169:32282169","CGI_shore"]
[1,32296442,32296541,100,23,0.268205611610755,0.749072225677324,-0.48086661406657,-139.978831291127,"CG","1:32293784:32296541","CGI"]
[1,32296442,32296541,100,23,0.268205611610755,0.749072225677324,-0.48086661406657,-139.978831291127,"CG","1:32296303:32298303","CGI_shore"]
[1,32572774,32572894,121,31,0.0120225124861406,0.0865345167043454,-0.0745120042182048,-151.740669830053,"CHH","1:32571434:32573435","CGI_shore"]
[1,32572774,32572894,121,31,0.0120225124861406,0.0865345167043454,-0.0745120042182048,-151.740669830053,"CHH","1:32572044:32574044","CGI_shore"]
[1,32607324,32607408,85,36,0.0238223986907689,0.086017200278261,-0.0621948015874921,-193.906345998178,"CHH","Os01g0772400","promoter","OsSTA34","Streptomyces cyclase/dehydrase family protein && sp|Q6DFA6|CQ10A_XENLA Coenzyme Q-binding protein COQ10 homolog A, mitochondrial OS=Xenopus laevis OX=8355 GN=coq10b-a PE=2 SV=1 && PF03364:Polyketide cyclase / dehydrase and lipid transport"]
[1,32607324,32607408,85,36,0.0238223986907689,0.086017200278261,-0.0621948015874921,-193.906345998178,"CHH","1:32601343:32616276","CGI"]
[1,32834596,32834662,67,13,0.47412576126062,0.792316957568465,-0.318191196307845,-66.1545658293913,"CG","Os01g0776300","promoter","Os01g0776300","Protein of unknown function DUF26 domain containing protein && - && -"]
[1,32834596,32834662,67,13,0.47412576126062,0.792316957568465,-0.318191196307845,-66.1545658293913,"CG","1:32830762:32837825","CGI"]
[1,32834596,32834662,67,13,0.47412576126062,0.792316957568465,-0.318191196307845,-66.1545658293913,"CG","Os01g0775750","intron","Os01g0775750","Hypothetical protein && - && PF01657:Salt stress response/antifungal"]
[1,32889192,32889284,93,8,0.385549604052678,0.679695641433864,-0.294146037381187,-43.7501208169637,"CG","1:32887374:32889375","CGI_shore"]
[1,32889192,32889284,93,8,0.385549604052678,0.679695641433864,-0.294146037381187,-43.7501208169637,"CG","Os01g0777200","exon","Os01g0777200","Peptidase aspartic, catalytic domain containing protein && sp|Q4V3D2|ASP36_ARATH Aspartic proteinase 36 OS=Arabidopsis thaliana OX=3702 GN=A36 PE=1 SV=1 && PF14541:Xylanase inhibitor C-terminal|PF14543:Xylanase inhibitor N-terminal"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","promoter","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","1:32984363:32986364","CGI_shore"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","1:32984952:32985506","CGI"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","TSS","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","exon","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,32985021,32985234,214,61,0.300019254515651,0.445069893688623,-0.145050639172972,-274.166997024027,"CG","Os01g0779100","intron","Os01g0779100","Peptidase M16, zinc-binding site domain containing protein && sp|O22941|IDE1_ARATH Insulin-degrading enzyme-like 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PXM16 PE=2 SV=1 && PF00675:Insulinase (Peptidase family M16)|PF16187:Middle or third domain of peptidase_M16|PF05193:Peptidase M16 inactive domain"]
[1,33085934,33086084,151,38,0.236751646700822,0.496609869343677,-0.259858222642855,-203.002120206015,"CHH","1:33084080:33086081","CGI_shore"]
[1,33085934,33086084,151,38,0.236751646700822,0.496609869343677,-0.259858222642855,-203.002120206015,"CHH","1:33085546:33087547","CGI_shore"]
[1,33171404,33171605,202,56,0.0885227173626679,0.23869673591494,-0.150174018552272,-313.353359882148,"CHH","1:33168476:33173184","CGI"]
[1,33171404,33171605,202,56,0.0885227173626679,0.23869673591494,-0.150174018552272,-313.353359882148,"CHH","Os01g0782800","intron","CYCLIC NUCLEOTIDE GATED CHANNEL 1","Similar to Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic nucleotide-and calmodulin-regulated ion channel 4) (AtHLM1) && sp|Q94AS9|CNGC4_ARATH Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana OX=3702 GN=CNGC4 PE=2 SV=2 && PF00027:Cyclic nucleotide-binding domain|PF00520:Ion transport protein"]
[1,33225244,33225371,128,42,0.188045444002531,0.436322572083017,-0.248277128080486,-224.100908878819,"CG","1:33223759:33225760","CGI_shore"]
[1,33225244,33225371,128,42,0.188045444002531,0.436322572083017,-0.248277128080486,-224.100908878819,"CG","1:33225243:33240120","CGI"]
[1,33378162,33378273,112,8,0.196709070465009,0.677825128612015,-0.481116058147006,-43.497051109437,"CG","1:33377867:33379868","CGI_shore"]
[1,33411201,33411339,139,47,0.0159503448896185,0.125972361728973,-0.110022016839355,-268.637588229221,"CHH","1:33410082:33412083","CGI_shore"]
[1,33411201,33411339,139,47,0.0159503448896185,0.125972361728973,-0.110022016839355,-268.637588229221,"CHH","Os01g0787600","promoter","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33411201,33411339,139,47,0.0159503448896185,0.125972361728973,-0.110022016839355,-268.637588229221,"CHH","Os01g0787600","intron","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33411926,33412018,93,24,0.0320130785910756,0.207180999930672,-0.175167921339596,-123.637203412101,"CHH","1:33410082:33412083","CGI_shore"]
[1,33411926,33412018,93,24,0.0320130785910756,0.207180999930672,-0.175167921339596,-123.637203412101,"CHH","Os01g0787600","promoter","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33411926,33412018,93,24,0.0320130785910756,0.207180999930672,-0.175167921339596,-123.637203412101,"CHH","Os01g0787600","intron","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33412074,33412148,75,25,0.0769940102257588,0.254997629108882,-0.178003618883123,-140.510460807396,"CHH","1:33410082:33412083","CGI_shore"]
[1,33412074,33412148,75,25,0.0769940102257588,0.254997629108882,-0.178003618883123,-140.510460807396,"CHH","Os01g0787600","promoter","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33412074,33412148,75,25,0.0769940102257588,0.254997629108882,-0.178003618883123,-140.510460807396,"CHH","Os01g0787600","intron","Prolyl Oligopeptidase 4, PROLYL OLIGOPEPTIDASE 4","Similar to Salicylic acid-binding protein 2 && sp|Q6RYA0|SABP2_TOBAC Salicylic acid-binding protein 2 OS=Nicotiana tabacum OX=4097 GN=SABP2 PE=1 SV=1 && -"]
[1,33451610,33452231,622,69,0.0480923071856815,0.212841537809759,-0.164749230624078,-225.927556705178,"CHH","1:33443956:33454533","CGI"]
[1,33451610,33452231,622,69,0.0480923071856815,0.212841537809759,-0.164749230624078,-225.927556705178,"CHH","Os01g0788400","promoter","PECTIN METHYLESTERASE 6","Similar to Pectinesterase (EC 3.1.1.11) (Fragment) && sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum OX=4081 GN=PME2.1 PE=2 SV=2 && PF04043:Plant invertase/pectin methylesterase inhibitor|PF01095:Pectinesterase"]
[1,33598161,33598276,116,31,0.341898228602838,0.758553846050947,-0.416655617448109,-171.492384982656,"CG","1:33597761:33599504","CGI"]
[1,33616622,33616778,157,37,0.0684113748013142,0.343353763323053,-0.274942388521739,-253.524967391352,"CHH","Os01g0793600","promoter","Os01g0793600","Conserved hypothetical protein && - && -"]
[1,33616622,33616778,157,37,0.0684113748013142,0.343353763323053,-0.274942388521739,-253.524967391352,"CHH","1:33613886:33622097","CGI"]
[1,33658055,33658129,75,8,0.0266086420771072,0.35801421374798,-0.331405571670872,-37.9834724880709,"CHG","1:33654012:33658348","CGI"]
[1,33658055,33658129,75,8,0.0266086420771072,0.35801421374798,-0.331405571670872,-37.9834724880709,"CHG","Os01g0794800","promoter","Os01g0794800","Similar to Subtilase && sp|Q9ZSB1|SBT3A_ARATH Subtilisin-like protease SBT3.10 OS=Arabidopsis thaliana OX=3702 GN=SBT3.10 PE=3 SV=2 && PF05922:Peptidase inhibitor I9|PF00082:Subtilase family|PF17766:Fibronectin type-III domain"]
[1,33658067,33658280,214,32,0.0453404300167643,0.313859108239711,-0.268518678222946,-209.302820552003,"CG","1:33654012:33658348","CGI"]
[1,33658067,33658280,214,32,0.0453404300167643,0.313859108239711,-0.268518678222946,-209.302820552003,"CG","Os01g0794800","promoter","Os01g0794800","Similar to Subtilase && sp|Q9ZSB1|SBT3A_ARATH Subtilisin-like protease SBT3.10 OS=Arabidopsis thaliana OX=3702 GN=SBT3.10 PE=3 SV=2 && PF05922:Peptidase inhibitor I9|PF00082:Subtilase family|PF17766:Fibronectin type-III domain"]
[1,33680995,33681052,58,13,0.13324894705308,0.447354366317068,-0.314105419263988,-58.9843228340308,"CHG","1:33680878:33683760","CGI"]
[1,33811517,33811697,181,37,0.104077410720339,0.34388945219535,-0.239812041475011,-204.986143445416,"CHH","1:33809703:33816395","CGI"]
[1,33968094,33968200,107,35,0.683073370464368,0.848266725291586,-0.165193354827218,-150.176972104413,"CG","Os01g0802000","promoter","RING finger protein OsRFPH2-12, RING-H2 protein 12","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 && PF14369:zinc-ribbon|PF13639:Ring finger domain"]
[1,33968094,33968200,107,35,0.683073370464368,0.848266725291586,-0.165193354827218,-150.176972104413,"CG","1:33967708:33968987","CGI"]
[1,33968689,33968782,94,15,0.128568068442419,0.647800651515018,-0.519232583072599,-179.274429825675,"CG","Os01g0802000","promoter","RING finger protein OsRFPH2-12, RING-H2 protein 12","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 && PF14369:zinc-ribbon|PF13639:Ring finger domain"]
[1,33968689,33968782,94,15,0.128568068442419,0.647800651515018,-0.519232583072599,-179.274429825675,"CG","1:33967708:33968987","CGI"]
[1,33968689,33968782,94,15,0.128568068442419,0.647800651515018,-0.519232583072599,-179.274429825675,"CG","Os01g0802000","TSS","RING finger protein OsRFPH2-12, RING-H2 protein 12","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 && PF14369:zinc-ribbon|PF13639:Ring finger domain"]
[1,33968689,33968782,94,15,0.128568068442419,0.647800651515018,-0.519232583072599,-179.274429825675,"CG","Os01g0802000","exon","RING finger protein OsRFPH2-12, RING-H2 protein 12","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 && PF14369:zinc-ribbon|PF13639:Ring finger domain"]
[1,33968689,33968782,94,15,0.128568068442419,0.647800651515018,-0.519232583072599,-179.274429825675,"CG","Os01g0802000","utr5","RING finger protein OsRFPH2-12, RING-H2 protein 12","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 && PF14369:zinc-ribbon|PF13639:Ring finger domain"]
[1,34305897,34306005,109,13,0.00647110563040632,0.324609988784709,-0.318138883154303,-87.7494955608273,"CHH","Os01g0807900","exon","Os01g0807900","Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2) && sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase OS=Arabidopsis thaliana OX=3702 GN=PYD2 PE=1 SV=1 && -"]
[1,34305897,34306005,109,13,0.00647110563040632,0.324609988784709,-0.318138883154303,-87.7494955608273,"CHH","Os01g0807900","utr3","Os01g0807900","Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2) && sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase OS=Arabidopsis thaliana OX=3702 GN=PYD2 PE=1 SV=1 && -"]
[1,34305897,34306005,109,13,0.00647110563040632,0.324609988784709,-0.318138883154303,-87.7494955608273,"CHH","Os01g0807900","TES","Os01g0807900","Similar to Dihydropyrimidinase (Dihydropyrimidine amidohydrolase) (EC 3.5.2.2) && sp|Q9FMP3|DPYS_ARATH Dihydropyrimidinase OS=Arabidopsis thaliana OX=3702 GN=PYD2 PE=1 SV=1 && -"]
[1,34704682,34704782,101,28,0.0460978700026121,0.175276785829233,-0.129178915826621,-149.455197531443,"CHH","1:34702698:34704699","CGI_shore"]
[1,34704682,34704782,101,28,0.0460978700026121,0.175276785829233,-0.129178915826621,-149.455197531443,"CHH","1:34704491:34706492","CGI_shore"]
[1,35024695,35024770,76,8,0.220654232953404,0.599124097710719,-0.378469864757315,-35.3869945811195,"CHG","1:35022701:35024702","CGI_shore"]
[1,35096857,35096957,101,14,0.39489134577617,0.599030432738825,-0.204139086962655,-68.9732953416772,"CG","Os01g0822001","promoter","Os01g0822001","Hypothetical gene && - && -"]
[1,35096857,35096957,101,14,0.39489134577617,0.599030432738825,-0.204139086962655,-68.9732953416772,"CG","1:35095066:35097067","CGI_shore"]
[1,35096857,35096957,101,14,0.39489134577617,0.599030432738825,-0.204139086962655,-68.9732953416772,"CG","1:35095566:35097567","CGI_shore"]
[1,35096857,35096957,101,14,0.39489134577617,0.599030432738825,-0.204139086962655,-68.9732953416772,"CG","Os01g0822200","exon","RECEPTOR-LIKE CYTOPLASMIC KINASE 47","Protein kinase, core domain containing protein && sp|Q9FM85|PBL16_ARATH Probable serine/threonine-protein kinase PBL16 OS=Arabidopsis thaliana OX=3702 GN=PBL16 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[1,35661747,35661846,100,6,0.609876963794549,0.93787370139351,-0.327996737598961,-40.8388799242545,"CG","1:35660705:35662706","CGI_shore"]
[1,35661747,35661846,100,6,0.609876963794549,0.93787370139351,-0.327996737598961,-40.8388799242545,"CG","1:35661344:35663344","CGI_shore"]
[1,35661747,35661846,100,6,0.609876963794549,0.93787370139351,-0.327996737598961,-40.8388799242545,"CG","Os01g0833100","exon","Os01g0833100","NLI interacting factor domain containing protein && sp|Q5S7T7|TIM50_PHYIN Mitochondrial import inner membrane translocase subunit TIM50 OS=Phytophthora infestans OX=4787 GN=TIM50 PE=2 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,35661747,35661846,100,6,0.609876963794549,0.93787370139351,-0.327996737598961,-40.8388799242545,"CG","Os01g0833100","intron","Os01g0833100","NLI interacting factor domain containing protein && sp|Q5S7T7|TIM50_PHYIN Mitochondrial import inner membrane translocase subunit TIM50 OS=Phytophthora infestans OX=4787 GN=TIM50 PE=2 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[1,35837499,35837633,135,41,0.0149140791247988,0.108474376323604,-0.0935602971988056,-221.990074810972,"CHH","Os01g0835800","promoter","Os01g0835800","Hypothetical conserved gene && sp|P0DMS1|NET2A_ARATH Protein NETWORKED 2A OS=Arabidopsis thaliana OX=3702 GN=NET2A PE=2 SV=1 && PF07765:KIP1-like protein"]
[1,35837499,35837633,135,41,0.0149140791247988,0.108474376323604,-0.0935602971988056,-221.990074810972,"CHH","1:35836551:35838552","CGI_shore"]
[1,35842615,35842757,143,36,0.00950738650845329,0.18809955060504,-0.178592164096586,-241.96930052953,"CHH","1:35840798:35842798","CGI_shore"]
[1,35842615,35842757,143,36,0.00950738650845329,0.18809955060504,-0.178592164096586,-241.96930052953,"CHH","1:35840995:35842996","CGI_shore"]
[1,35842615,35842757,143,36,0.00950738650845329,0.18809955060504,-0.178592164096586,-241.96930052953,"CHH","Os01g0836400","promoter","Os01g0836400","Hypothetical conserved gene && sp|F4IUY8|SAC3A_ARATH SAC3 family protein A OS=Arabidopsis thaliana OX=3702 GN=SAC3A PE=1 SV=1 && -"]
[1,36629020,36629079,60,6,0.405230057277024,0.639647039125044,-0.23441698184802,-28.2672535725795,"CHG","1:36625655:36641830","CGI"]
[1,36649515,36649602,88,19,0.0840614098287833,0.167165478459925,-0.0831040686311421,-107.738340388444,"CHH","Os01g0851100","promoter","Os01g0851100","GDP-fucose protein O-fucosyltransferase domain containing protein && sp|Q9SH89|OFT19_ARATH O-fucosyltransferase 19 OS=Arabidopsis thaliana OX=3702 GN=OFUT19 PE=2 SV=1 && -"]
[1,36649515,36649602,88,19,0.0840614098287833,0.167165478459925,-0.0831040686311421,-107.738340388444,"CHH","1:36647171:36652226","CGI"]
[1,36738057,36738148,92,27,0.0196743288723054,0.130857153602686,-0.11118282473038,-139.052691719941,"CHH","1:36736083:36738083","CGI_shore"]
[1,36738057,36738148,92,27,0.0196743288723054,0.130857153602686,-0.11118282473038,-139.052691719941,"CHH","Os01g0853000","promoter","Os01g0853000","Conserved hypothetical protein && - && -"]
[1,36738057,36738148,92,27,0.0196743288723054,0.130857153602686,-0.11118282473038,-139.052691719941,"CHH","1:36738084:36738781","CGI"]
[1,36738057,36738148,92,27,0.0196743288723054,0.130857153602686,-0.11118282473038,-139.052691719941,"CHH","1:36738087:36740087","CGI_shore"]
[1,36738085,36738301,217,66,0.407672829666809,0.800160360421627,-0.392487530754818,-453.273955168546,"CG","Os01g0853000","promoter","Os01g0853000","Conserved hypothetical protein && - && -"]
[1,36738085,36738301,217,66,0.407672829666809,0.800160360421627,-0.392487530754818,-453.273955168546,"CG","1:36738084:36738781","CGI"]
[1,36738085,36738301,217,66,0.407672829666809,0.800160360421627,-0.392487530754818,-453.273955168546,"CG","1:36738087:36740087","CGI_shore"]
[1,36748810,36748918,109,11,0.322284892172624,0.613266400179452,-0.290981508006828,-60.4951363604236,"CG","Os01g0853400","intron","coronatine insensitive 1a, CORONATINE INSENSITIVE1","Component of the SCF E3 ubiquitin ligase complex, Jasmonate-regulated defense responses, Promoting leaf senescenc && sp|A2WX30|COI1A_ORYSI Coronatine-insensitive protein homolog 1a OS=Oryza sativa subsp. indica OX=39946 GN=COI1A PE=3 SV=1 && PF18791:Transport inhibitor response 1 protein domain|PF18511:F-box"]
[1,36748810,36748918,109,11,0.322284892172624,0.613266400179452,-0.290981508006828,-60.4951363604236,"CG","1:36748101:36750102","CGI_shore"]
[1,36974483,36974793,311,48,0.0169401589602003,0.218640079562228,-0.201699920602028,-381.171848486019,"CHH","1:36974060:36976061","CGI_shore"]
[1,37094223,37094383,161,34,0.0534851374146749,0.166324193423449,-0.112839056008774,-173.213743935801,"CHH","1:37088706:37099464","CGI"]
[1,37129260,37129342,83,8,0.236583582433491,0.431123121447359,-0.194539539013868,-34.0969025837815,"CHG","Target=RETROFIT_I-int:1-2427;Class=LTR/Copia","repeat"]
[1,37345123,37345220,98,15,0.0120723067418597,0.167491494519276,-0.155419187777416,-70.3240795304327,"CHH","1:37344209:37346210","CGI_shore"]
[1,37345123,37345220,98,15,0.0120723067418597,0.167491494519276,-0.155419187777416,-70.3240795304327,"CHH","1:37345035:37347035","CGI_shore"]
[1,37377280,37377334,55,16,0.0146590721942613,0.0763165092008274,-0.0616574370065661,-72.3823111829267,"CHH","1:37376476:37378477","CGI_shore"]
[1,37739689,37739974,286,89,0.16088649070928,0.374085885695229,-0.213199394985949,-755.530166330961,"CG","Os01g0870400","exon","Os01g0870400","Similar to S-domain class receptor-like kinase3 && sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana OX=3702 GN=At2g19130 PE=2 SV=1 && PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain|PF01453:D-mannose binding lectin|PF08276:PAN-like domain"]
[1,37794643,37794734,92,9,0.282454490659166,0.556697743026782,-0.274243252367616,-42.8767507597693,"CHG","Os01g0871600","promoter","Proton-dependent oligopeptide transporter family protein","Similar to Peptide transporter PTR2-B && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && PF00854:POT family"]
[1,37835593,37835678,86,9,0.671577388685747,0.836961435920854,-0.165384047235108,-42.241298341913,"CG","1:37834977:37836977","CGI_shore"]
[1,37835593,37835678,86,9,0.671577388685747,0.836961435920854,-0.165384047235108,-42.241298341913,"CG","Os01g0872533","exon","Os01g0872533","Hypothetical protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835593,37835678,86,9,0.671577388685747,0.836961435920854,-0.165384047235108,-42.241298341913,"CG","Os01g0872500","exon","Os01g0872500","Oligopeptide transporter domain containing protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835593,37835678,86,9,0.671577388685747,0.836961435920854,-0.165384047235108,-42.241298341913,"CG","Os01g0872533","utr5","Os01g0872533","Hypothetical protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835593,37835678,86,9,0.671577388685747,0.836961435920854,-0.165384047235108,-42.241298341913,"CG","Os01g0872533","intron","Os01g0872533","Hypothetical protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835593,37835678,86,9,0.671577388685747,0.836961435920854,-0.165384047235108,-42.241298341913,"CG","Os01g0872500","intron","Os01g0872500","Oligopeptide transporter domain containing protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835989,37836143,155,14,0.496465196151142,0.734459588303356,-0.237994392152214,-71.7286997257044,"CG","1:37834977:37836977","CGI_shore"]
[1,37835989,37836143,155,14,0.496465196151142,0.734459588303356,-0.237994392152214,-71.7286997257044,"CG","Os01g0872500","exon","Os01g0872500","Oligopeptide transporter domain containing protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835989,37836143,155,14,0.496465196151142,0.734459588303356,-0.237994392152214,-71.7286997257044,"CG","Os01g0872533","exon","Os01g0872533","Hypothetical protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835989,37836143,155,14,0.496465196151142,0.734459588303356,-0.237994392152214,-71.7286997257044,"CG","Os01g0872533","utr5","Os01g0872533","Hypothetical protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835989,37836143,155,14,0.496465196151142,0.734459588303356,-0.237994392152214,-71.7286997257044,"CG","Os01g0872500","utr3","Os01g0872500","Oligopeptide transporter domain containing protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37835989,37836143,155,14,0.496465196151142,0.734459588303356,-0.237994392152214,-71.7286997257044,"CG","Os01g0872500","intron","Os01g0872500","Oligopeptide transporter domain containing protein && sp|Q0WP01|PTR9_ARATH Protein NRT1/ PTR FAMILY 5.10 OS=Arabidopsis thaliana OX=3702 GN=NPF5.10 PE=2 SV=1 && -"]
[1,37924019,37924090,72,10,0.0836800713649505,0.367941553658404,-0.284261482293454,-50.3386704288871,"CG","1:37923233:37925233","CGI_shore"]
[1,38171690,38171872,183,54,0.0657672530791578,0.29710969124607,-0.231342438166913,-275.880180872302,"CHH","1:38165506:38182977","CGI"]
[1,38214979,38215043,65,7,0.654403143897361,0.875393435116344,-0.220990291218983,-32.82196796417,"CG","Os01g0880400","promoter","trichome birefringence-like 26","Protein of unknown function DUF231, plant domain containing protein && sp|F4I037|TBL7_ARATH Protein trichome berefringence-like 7 OS=Arabidopsis thaliana OX=3702 GN=TBL7 PE=3 SV=1 && PF13839:GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p|PF14416:PMR5 N terminal Domain"]
[1,38214979,38215043,65,7,0.654403143897361,0.875393435116344,-0.220990291218983,-32.82196796417,"CG","1:38214366:38216366","CGI_shore"]
[1,38214979,38215043,65,7,0.654403143897361,0.875393435116344,-0.220990291218983,-32.82196796417,"CG","Os01g0880400","intron","trichome birefringence-like 26","Protein of unknown function DUF231, plant domain containing protein && sp|F4I037|TBL7_ARATH Protein trichome berefringence-like 7 OS=Arabidopsis thaliana OX=3702 GN=TBL7 PE=3 SV=1 && PF13839:GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p|PF14416:PMR5 N terminal Domain"]
[1,38214979,38215043,65,7,0.654403143897361,0.875393435116344,-0.220990291218983,-32.82196796417,"CG","Os01g0880400","exon","trichome birefringence-like 26","Protein of unknown function DUF231, plant domain containing protein && sp|F4I037|TBL7_ARATH Protein trichome berefringence-like 7 OS=Arabidopsis thaliana OX=3702 GN=TBL7 PE=3 SV=1 && PF13839:GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p|PF14416:PMR5 N terminal Domain"]
[1,38692848,38692984,137,34,0.00944325542120803,0.140055413946449,-0.130612158525241,-184.275024883676,"CHH","Os01g0889900","promoter","Os01g0889900","Serine/threonine protein kinase-related domain containing protein && sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana OX=3702 GN=At2g19130 PE=2 SV=1 && PF08276:PAN-like domain|PF00069:Protein kinase domain|PF01453:D-mannose binding lectin|PF00954:S-locus glycoprotein domain"]
[1,39268115,39268342,228,17,0.23460611269172,0.628624607229312,-0.394018494537591,-118.654575230553,"CG","1:39266982:39268982","CGI_shore"]
[1,39268115,39268342,228,17,0.23460611269172,0.628624607229312,-0.394018494537591,-118.654575230553,"CG","Os01g0901800","intron","Os01g0901800","Similar to acid phosphatase/vanadium-dependent haloperoxidase related && sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) OX=224308 GN=yuiD PE=4 SV=1 && -"]
[1,39268115,39268342,228,17,0.23460611269172,0.628624607229312,-0.394018494537591,-118.654575230553,"CG","Os01g0901800","exon","Os01g0901800","Similar to acid phosphatase/vanadium-dependent haloperoxidase related && sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) OX=224308 GN=yuiD PE=4 SV=1 && -"]
[1,39392008,39392084,77,15,0.0197294675713863,0.13367206783653,-0.113942600265144,-75.3664684106325,"CHH","Os01g0904700","promoter","B-TYPE RESPONSE REGULATOR 6","B-type response regulator, Cytokinin signalin && sp|Q5N6V8|ORR26_ORYSJ Two-component response regulator ORR26 OS=Oryza sativa subsp. japonica OX=39947 GN=RR26 PE=3 SV=2 && PF00072:Response regulator receiver domain|PF00249:Myb-like DNA-binding domain"]
[1,39392008,39392084,77,15,0.0197294675713863,0.13367206783653,-0.113942600265144,-75.3664684106325,"CHH","1:39391331:39393332","CGI_shore"]
[1,39401923,39402102,180,34,0.0777952243319047,0.213216695857657,-0.135421471525753,-195.779428347606,"CHH","1:39400051:39413043","CGI"]
[1,39628398,39628510,113,24,0.642590806112486,0.847346178339906,-0.20475537222742,-100.504786169063,"CG","1:39626926:39628927","CGI_shore"]
[1,39628398,39628510,113,24,0.642590806112486,0.847346178339906,-0.20475537222742,-100.504786169063,"CG","1:39628269:39628632","CGI"]
[1,39634803,39634897,95,23,0.0418575437093656,0.250563118835565,-0.208705575126199,-142.228526808838,"CHH","1:39633301:39635302","CGI_shore"]
[1,39634803,39634897,95,23,0.0418575437093656,0.250563118835565,-0.208705575126199,-142.228526808838,"CHH","1:39634214:39635399","CGI"]
[1,39634803,39634897,95,23,0.0418575437093656,0.250563118835565,-0.208705575126199,-142.228526808838,"CHH","1:39634813:39636813","CGI_shore"]
[1,39640659,39640771,113,6,0.497421720909932,0.893648298398319,-0.396226577488387,-32.4167122566554,"CG","1:39638686:39640687","CGI_shore"]
[1,39853845,39853924,80,12,0.0368847012164694,0.165097380799471,-0.128212679583001,-61.1034702046821,"CG","1:39853314:39855315","CGI_shore"]
[1,39853845,39853924,80,12,0.0368847012164694,0.165097380799471,-0.128212679583001,-61.1034702046821,"CG","Os01g0914700","exon","SPPL3","Peptidase A22B, signal peptide peptidase domain containing protein && sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL3 PE=2 SV=1 && PF04258:Signal peptide peptidase|PF02225:PA domain"]
[1,39853845,39853924,80,12,0.0368847012164694,0.165097380799471,-0.128212679583001,-61.1034702046821,"CG","Os01g0914700","intron","SPPL3","Peptidase A22B, signal peptide peptidase domain containing protein && sp|Q5N808|SIPL3_ORYSJ Signal peptide peptidase-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL3 PE=2 SV=1 && PF04258:Signal peptide peptidase|PF02225:PA domain"]
[1,40478839,40479035,197,21,0.152342339409109,0.429153632059635,-0.276811292650526,-127.30196492998,"CG","Os01g0924400","exon","TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 6","Similar to Auxin-induced basic helix-loop-helix transcription factor && sp|Q9LSD5|TCP20_ARATH Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1 && -"]
[1,40478839,40479035,197,21,0.152342339409109,0.429153632059635,-0.276811292650526,-127.30196492998,"CG","Os01g0924400","utr3","TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 6","Similar to Auxin-induced basic helix-loop-helix transcription factor && sp|Q9LSD5|TCP20_ARATH Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1 && -"]
[1,40478839,40479035,197,21,0.152342339409109,0.429153632059635,-0.276811292650526,-127.30196492998,"CG","1:40478477:40480478","CGI_shore"]
[1,40627981,40628061,81,13,0.47884686086986,0.696026885776072,-0.217180024906213,-62.6392637815764,"CG","1:40627086:40629086","CGI_shore"]
[1,40627981,40628061,81,13,0.47884686086986,0.696026885776072,-0.217180024906213,-62.6392637815764,"CG","1:40627168:40629169","CGI_shore"]
[1,40627981,40628061,81,13,0.47884686086986,0.696026885776072,-0.217180024906213,-62.6392637815764,"CG","Os01g0926600","exon","glycosyltransferase gene family 47 member A, glycosyltransferase 47A","Similar to Pectin-glucuronyltransferase && sp|Q8S1X8|GT14_ORYSJ Probable glucuronosyltransferase Os01g0926600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0926600 PE=2 SV=1 && PF03016:Exostosin family"]
[1,40873831,40873946,116,16,0.179490054941785,0.41709631896774,-0.237606264025955,-78.8828276014968,"CG","1:40871868:40873869","CGI_shore"]
[1,40873831,40873946,116,16,0.179490054941785,0.41709631896774,-0.237606264025955,-78.8828276014968,"CG","Os01g0931400","promoter","Regulator of XA21-1","Similar to thiamin pyrophosphokinase 1 && sp|Q5JK24|TPK1_ORYSJ Thiamine pyrophosphokinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPK1 PE=2 SV=1 && -"]
[1,40873831,40873946,116,16,0.179490054941785,0.41709631896774,-0.237606264025955,-78.8828276014968,"CG","1:40873402:40875402","CGI_shore"]
[1,41153250,41153353,104,20,0.151101827492465,0.385041298140891,-0.233939470648426,-105.17109279708,"CG","1:41152470:41154470","CGI_shore"]
[1,41153250,41153353,104,20,0.151101827492465,0.385041298140891,-0.233939470648426,-105.17109279708,"CG","Os01g0937300","exon","Os01g0937300","NB-ARC domain containing protein && sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 && -"]
[1,41153250,41153353,104,20,0.151101827492465,0.385041298140891,-0.233939470648426,-105.17109279708,"CG","Os01g0937300","promoter","Os01g0937300","NB-ARC domain containing protein && sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 && -"]
[1,41247138,41247260,123,32,0.00924677663688996,0.152746868608126,-0.143500091971236,-218.504164694457,"CHH","1:41246768:41248769","CGI_shore"]
[1,41247138,41247260,123,32,0.00924677663688996,0.152746868608126,-0.143500091971236,-218.504164694457,"CHH","Os01g0939600","intron","glycerol-3-phosphate dehydrogenase 2","Similar to Glycerol-3-phosphate dehydrogenase-like protein (Fragment) && sp|Q8S0G4|GPDH1_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0939600 PE=2 SV=1 && PF07479:NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus|PF01210:NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus"]
[1,41373389,41373477,89,29,0.16091997498228,0.368274265523801,-0.207354290541521,-132.426599498798,"CHG","Os01g0941500","promoter","Os01g0941500","Similar to Beta-1,3-glucanase && sp|P15737|E13B_HORVU Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare OX=4513 PE=1 SV=1 && PF00332:Glycosyl hydrolases family 17"]
[1,41373389,41373477,89,29,0.16091997498228,0.368274265523801,-0.207354290541521,-132.426599498798,"CHG","1:41332855:41424318","CGI"]
[1,41548910,41549003,94,7,0.0967158064800254,0.577800762023007,-0.481084955542981,-37.6247586902186,"CG","Os01g0945150","promoter","Os01g0945150","Hypothetical protein && sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BAT1 PE=2 SV=1 && -"]
[1,41548910,41549003,94,7,0.0967158064800254,0.577800762023007,-0.481084955542981,-37.6247586902186,"CG","1:41547160:41549160","CGI_shore"]
[1,41692659,41692772,114,17,0.0219784653915458,0.106254507609696,-0.0842760422181503,-77.3710660766655,"CHG","1:41691486:41693487","CGI_shore"]
[1,41692659,41692772,114,17,0.0219784653915458,0.106254507609696,-0.0842760422181503,-77.3710660766655,"CHG","Os01g0948100","intron","OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4","Restriction endonuclease, type II-like, core domain containing protein && sp|Q8GT06|MUS81_ORYSJ Crossover junction endonuclease MUS81 OS=Oryza sativa subsp. japonica OX=39947 GN=MUS81 PE=1 SV=1 && PF02732:ERCC4 domain"]
[1,41692659,41692772,114,17,0.0219784653915458,0.106254507609696,-0.0842760422181503,-77.3710660766655,"CHG","Os01g0948100","exon","OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4","Restriction endonuclease, type II-like, core domain containing protein && sp|Q8GT06|MUS81_ORYSJ Crossover junction endonuclease MUS81 OS=Oryza sativa subsp. japonica OX=39947 GN=MUS81 PE=1 SV=1 && PF02732:ERCC4 domain"]
[1,41851401,41851599,199,45,0.0784638847395566,0.248417400996434,-0.169953516256878,-240.314734127207,"CHH","1:41850107:41852108","CGI_shore"]
[1,42042183,42042263,81,27,0.00885246060679967,0.0714531289350764,-0.0626006683282768,-142.563478493017,"CHH","1:42041686:42043686","CGI_shore"]
[1,42355872,42356208,337,116,0.0541694937407795,0.196996979372895,-0.142827485632116,-931.825228375523,"CG","Os01g0960500","promoter","Os01g0960500","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1 && PF13920:Zinc finger, C3HC4 type (RING finger)|PF07002:Copine"]
[1,42355872,42356208,337,116,0.0541694937407795,0.196996979372895,-0.142827485632116,-931.825228375523,"CG","1:42355556:42356177","CGI"]
[1,42355872,42356208,337,116,0.0541694937407795,0.196996979372895,-0.142827485632116,-931.825228375523,"CG","1:42356177:42358178","CGI_shore"]
[1,42356029,42356120,92,19,0.0297047902526385,0.116487233499439,-0.0867824432468005,-93.4838961398925,"CHG","Os01g0960500","promoter","Os01g0960500","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1 && PF13920:Zinc finger, C3HC4 type (RING finger)|PF07002:Copine"]
[1,42356029,42356120,92,19,0.0297047902526385,0.116487233499439,-0.0867824432468005,-93.4838961398925,"CHG","1:42355556:42356177","CGI"]
[1,42641044,42641094,51,4,0.0317532823141174,0.245348680789657,-0.21359539847554,-20.1033270133344,"CHG","Os01g0967000","promoter","Os01g0967000","Similar to Small nuclear ribonucleoprotein-like protein && sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1 && PF01423:LSM domain"]
[1,42641044,42641094,51,4,0.0317532823141174,0.245348680789657,-0.21359539847554,-20.1033270133344,"CHG","1:42640725:42642725","CGI_shore"]
[10,93815,93920,106,14,0.016216690975566,0.492377639806552,-0.476160948830986,-83.2824693793109,"CHH","Os10g0101000","promoter","Os10g0101000","Serine/threonine protein kinase domain containing protein && sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana OX=3702 GN=At5g24080 PE=2 SV=1 && PF00954:S-locus glycoprotein domain|PF00069:Protein kinase domain"]
[10,93815,93920,106,14,0.016216690975566,0.492377639806552,-0.476160948830986,-83.2824693793109,"CHH","10:92970:94970","CGI_shore"]
[10,118310,118370,61,10,0.195251157617685,0.407056797303446,-0.211805639685761,-43.7937455970543,"CHG","Os10g0101200","promoter","SERINE CARBOXYPEPTIDASE 45","Serine carboxypeptidase, Regulation of grain filling and seed germinatio && sp|Q9C7Z9|SCP18_ARATH Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana OX=3702 GN=SCPL18 PE=2 SV=2 && PF00450:Serine carboxypeptidase"]
[10,118310,118370,61,10,0.195251157617685,0.407056797303446,-0.211805639685761,-43.7937455970543,"CHG","10:116511:118512","CGI_shore"]
[10,118310,118370,61,10,0.195251157617685,0.407056797303446,-0.211805639685761,-43.7937455970543,"CHG","10:118005:119214","CGI"]
[10,439208,439349,142,38,0.0202240813990593,0.278151996199978,-0.257927914800919,-260.746592277551,"CHH","Os10g0105933","promoter","Os10g0105933","Similar to transferase family protein && sp|Q7G4G7|AT1_ORYSJ Acyl transferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=AT1 PE=2 SV=1 && -"]
[10,439208,439349,142,38,0.0202240813990593,0.278151996199978,-0.257927914800919,-260.746592277551,"CHH","10:438157:440158","CGI_shore"]
[10,439609,439683,75,28,0.067310835330369,0.152735429042177,-0.085424593711808,-140.914717146954,"CHH","Os10g0105933","promoter","Os10g0105933","Similar to transferase family protein && sp|Q7G4G7|AT1_ORYSJ Acyl transferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=AT1 PE=2 SV=1 && -"]
[10,439609,439683,75,28,0.067310835330369,0.152735429042177,-0.085424593711808,-140.914717146954,"CHH","10:438157:440158","CGI_shore"]
[10,458227,458385,159,23,0.0088625363992167,0.230163902173594,-0.221301365774377,-106.512334724229,"CHH","10:455906:460623","CGI"]
[10,1053206,1053678,473,103,0.236692269009695,0.48288020380275,-0.246187934793055,-869.56496937848,"CG","10:1049829:1060023","CGI"]
[10,1053206,1053678,473,103,0.236692269009695,0.48288020380275,-0.246187934793055,-869.56496937848,"CG","Os10g0116200","intron","Os10g0116200","Conserved hypothetical protein && - && -"]
[10,1053206,1053678,473,103,0.236692269009695,0.48288020380275,-0.246187934793055,-869.56496937848,"CG","Os10g0116300","promoter","Os10g0116300","EF-HAND 2 domain containing protein && - && -"]
[10,1053206,1053678,473,103,0.236692269009695,0.48288020380275,-0.246187934793055,-869.56496937848,"CG","Os10g0116300","TSS","Os10g0116300","EF-HAND 2 domain containing protein && - && -"]
[10,1053206,1053678,473,103,0.236692269009695,0.48288020380275,-0.246187934793055,-869.56496937848,"CG","Os10g0116300","utr5","Os10g0116300","EF-HAND 2 domain containing protein && - && -"]
[10,1053206,1053678,473,103,0.236692269009695,0.48288020380275,-0.246187934793055,-869.56496937848,"CG","Os10g0116300","exon","Os10g0116300","EF-HAND 2 domain containing protein && - && -"]
[10,1059498,1059628,131,53,0.339458906861081,0.536817840192758,-0.197358933331677,-250.155966874475,"CG","10:1049829:1060023","CGI"]
[10,1059498,1059628,131,53,0.339458906861081,0.536817840192758,-0.197358933331677,-250.155966874475,"CG","10:1059030:1061030","CGI_shore"]
[10,1071367,1071450,84,16,0.0356165720474811,0.122219507430629,-0.0866029353831479,-103.169728542218,"CHH","10:1069736:1071736","CGI_shore"]
[10,1071367,1071450,84,16,0.0356165720474811,0.122219507430629,-0.0866029353831479,-103.169728542218,"CHH","10:1070168:1072169","CGI_shore"]
[10,1071367,1071450,84,16,0.0356165720474811,0.122219507430629,-0.0866029353831479,-103.169728542218,"CHH","Os10g0116701","promoter","Os10g0116701","Hypothetical conserved gene && sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 && PF13947:Wall-associated receptor kinase galacturonan-binding"]
[10,1071367,1071450,84,16,0.0356165720474811,0.122219507430629,-0.0866029353831479,-103.169728542218,"CHH","Target=(CTCGG)n:2-134;Class=Simple_repeat","repeat"]
[10,1301742,1301851,110,41,0.003640500300719,0.0463330979113949,-0.0426925976106759,-205.388830942831,"CHH","10:1301635:1303636","CGI_shore"]
[10,1307332,1307493,162,72,0.0224819072985938,0.0964132973990618,-0.073931390100468,-380.824210673631,"CHH","10:1306211:1308212","CGI_shore"]
[10,1307332,1307493,162,72,0.0224819072985938,0.0964132973990618,-0.073931390100468,-380.824210673631,"CHH","Os10g0120300","promoter","Os10g0120300","Similar to Leucine Rich Repeat family protein, expressed && sp|Q6JN47|EIX1_SOLLC Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2 && PF08263:Leucine rich repeat N-terminal domain|PF13855:Leucine rich repeat"]
[10,1307332,1307493,162,72,0.0224819072985938,0.0964132973990618,-0.073931390100468,-380.824210673631,"CHH","10:1307068:1307917","CGI"]
[10,1637729,1637783,55,4,0.184667305638707,0.390455545718346,-0.205788240079639,-17.2096460654525,"CHG","10:1637410:1637817","CGI"]
[10,1797910,1797960,51,17,0.124700833720894,0.193442431606232,-0.0687415978853371,-68.4973960383979,"CHH","10:1796390:1798391","CGI_shore"]
[10,1836211,1836327,117,43,0.532651701515434,0.85392924382285,-0.321277542307416,-212.41487412067,"CG","10:1828990:1842882","CGI"]
[10,1836211,1836327,117,43,0.532651701515434,0.85392924382285,-0.321277542307416,-212.41487412067,"CG","Os10g0130000","promoter","Os10g0130000","Similar to NPKL1 && sp|O80888|M3K17_ARATH Mitogen-activated protein kinase kinase kinase 17 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK17 PE=1 SV=1 && -"]
[10,2048973,2049111,139,32,0.0846192567439388,0.306379830367821,-0.221760573623882,-168.641398304674,"CHH","10:2048779:2049165","CGI"]
[10,2048973,2049111,139,32,0.0846192567439388,0.306379830367821,-0.221760573623882,-168.641398304674,"CHH","Os10g0132700","intron","Os10g0132700","Similar to NB-ARC domain containing protein, expressed && sp|F7J0N2|RGA5R_ORYSJ Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 && -"]
[10,2048976,2049098,123,19,0.289130161445716,0.636539791949587,-0.347409630503871,-115.967327278771,"CHG","10:2048779:2049165","CGI"]
[10,2048976,2049098,123,19,0.289130161445716,0.636539791949587,-0.347409630503871,-115.967327278771,"CHG","Os10g0132700","intron","Os10g0132700","Similar to NB-ARC domain containing protein, expressed && sp|F7J0N2|RGA5R_ORYSJ Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 && -"]
[10,2290657,2290731,75,14,6.88064776187872E-3,0.0782672067264884,-0.0713865589646097,-79.8974538380885,"CHH","10:2288783:2290783","CGI_shore"]
[10,2290657,2290731,75,14,6.88064776187872E-3,0.0782672067264884,-0.0713865589646097,-79.8974538380885,"CHH","Os10g0136950","promoter","Os10g0136950","Hypothetical protein && - && PF12937:F-box-like"]
[10,2290657,2290731,75,14,6.88064776187872E-3,0.0782672067264884,-0.0713865589646097,-79.8974538380885,"CHH","10:2290499:2292499","CGI_shore"]
[10,2290657,2290731,75,14,6.88064776187872E-3,0.0782672067264884,-0.0713865589646097,-79.8974538380885,"CHH","Os10g0136800","intron","Os10g0136800","Hypothetical gene && - && -"]
[10,2313256,2313381,126,58,0.659538923471176,0.832120702022929,-0.172581778551753,-254.975182008925,"CG","Os10g0137100","exon","Os10g0137100","Conserved hypothetical protein && - && -"]
[10,2313256,2313381,126,58,0.659538923471176,0.832120702022929,-0.172581778551753,-254.975182008925,"CG","Os10g0137100","utr3","Os10g0137100","Conserved hypothetical protein && - && -"]
[10,2324727,2324865,139,28,7.30727108014762E-3,0.114335034052581,-0.107027762972433,-160.122212430946,"CHH","10:2322747:2324747","CGI_shore"]
[10,2324727,2324865,139,28,7.30727108014762E-3,0.114335034052581,-0.107027762972433,-160.122212430946,"CHH","10:2324748:2334362","CGI"]
[10,2324762,2324890,129,14,0.258546048998216,0.649036653364231,-0.390490604366016,-80.8981076528781,"CHG","10:2324748:2334362","CGI"]
[10,2365994,2366147,154,42,0.030374701352,0.114808561166442,-0.0844338598144419,-218.500621207586,"CHH","10:2364922:2366922","CGI_shore"]
[10,2365994,2366147,154,42,0.030374701352,0.114808561166442,-0.0844338598144419,-218.500621207586,"CHH","10:2365933:2367934","CGI_shore"]
[10,2365994,2366147,154,42,0.030374701352,0.114808561166442,-0.0844338598144419,-218.500621207586,"CHH","Os10g0138100","intron","aldehyde oxidase","Similar to Aldehyde oxidase-2 && sp|Q7XH05|ALDO1_ORYSJ Probable aldehyde oxidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0138100 PE=2 SV=1 && PF02738:Molybdopterin-binding domain of aldehyde dehydrogenase|PF00941:FAD binding domain in molybdopterin dehydrogenase|PF01799:[2Fe-2S] binding domain|PF03450:CO dehydrogenase flavoprotein C-terminal domain|PF01315:Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain"]
[10,2507925,2508015,91,37,0.0564713641430609,0.190189646854497,-0.133718282711437,-160.135685171951,"CG","10:2507081:2509081","CGI_shore"]
[10,2507925,2508015,91,37,0.0564713641430609,0.190189646854497,-0.133718282711437,-160.135685171951,"CG","10:2507347:2508043","CGI"]
[10,2507925,2508015,91,37,0.0564713641430609,0.190189646854497,-0.133718282711437,-160.135685171951,"CG","Os10g0140700","exon","Os10g0140700","Hypothetical conserved gene && - && -"]
[10,2507925,2508015,91,37,0.0564713641430609,0.190189646854497,-0.133718282711437,-160.135685171951,"CG","Os10g0140700","utr3","Os10g0140700","Hypothetical conserved gene && - && -"]
[10,2507925,2508015,91,37,0.0564713641430609,0.190189646854497,-0.133718282711437,-160.135685171951,"CG","10:2506073:2508074","CGI_shore"]
[10,2850626,2850683,58,11,0.0121938470454155,0.0802522795278968,-0.0680584324824813,-78.91617599883,"CHH","Os10g0147400","exon","like aux1-4, related to AUX1-4, auxin transporter 4","Similar to Auxin influx carrier protein && sp|Q7XGU4|LAX13_ORYSJ Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0147400 PE=2 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[10,2850626,2850683,58,11,0.0121938470454155,0.0802522795278968,-0.0680584324824813,-78.91617599883,"CHH","10:2850157:2852157","CGI_shore"]
[10,2850626,2850683,58,11,0.0121938470454155,0.0802522795278968,-0.0680584324824813,-78.91617599883,"CHH","Os10g0147566","intron","Os10g0147566","Hypothetical protein && sp|Q7XGU4|LAX13_ORYSJ Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0147400 PE=2 SV=1 && -"]
[10,2850626,2850683,58,11,0.0121938470454155,0.0802522795278968,-0.0680584324824813,-78.91617599883,"CHH","10:2850329:2852330","CGI_shore"]
[10,2850626,2850683,58,11,0.0121938470454155,0.0802522795278968,-0.0680584324824813,-78.91617599883,"CHH","Os10g0147400","intron","like aux1-4, related to AUX1-4, auxin transporter 4","Similar to Auxin influx carrier protein && sp|Q7XGU4|LAX13_ORYSJ Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0147400 PE=2 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[10,2850626,2850683,58,11,0.0121938470454155,0.0802522795278968,-0.0680584324824813,-78.91617599883,"CHH","Os10g0147400","utr5","like aux1-4, related to AUX1-4, auxin transporter 4","Similar to Auxin influx carrier protein && sp|Q7XGU4|LAX13_ORYSJ Auxin transporter-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0147400 PE=2 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[10,3034915,3035023,109,24,0.0248102897343604,0.108932227706125,-0.0841219379717649,-116.084714088644,"CHH","10:3034207:3036208","CGI_shore"]
[10,3034915,3035023,109,24,0.0248102897343604,0.108932227706125,-0.0841219379717649,-116.084714088644,"CHH","10:3034690:3036691","CGI_shore"]
[10,3465389,3465528,140,29,0.0278235262320418,0.156652635895873,-0.128829109663831,-151.364111984513,"CHH","Os10g0155200","promoter","Os10g0155200","Hypothetical conserved gene && - && -"]
[10,3465389,3465528,140,29,0.0278235262320418,0.156652635895873,-0.128829109663831,-151.364111984513,"CHH","10:3465096:3467097","CGI_shore"]
[10,3886790,3886862,73,22,0.0278735970785356,0.0863886718103965,-0.0585150747318609,-98.9752419292159,"CHH","10:3885021:3887022","CGI_shore"]
[10,3898751,3898805,55,5,0.313133052132574,0.657578263755094,-0.34444521162252,-23.1937334299926,"CHG","10:3896907:3898908","CGI_shore"]
[10,3898751,3898805,55,5,0.313133052132574,0.657578263755094,-0.34444521162252,-23.1937334299926,"CHG","10:3897659:3899659","CGI_shore"]
[10,3898751,3898805,55,5,0.313133052132574,0.657578263755094,-0.34444521162252,-23.1937334299926,"CHG","Os10g0161100","intron","Os10g0161100","Hypothetical gene && - && -"]
[10,3955037,3956478,1442,57,0.0156547764047357,0.0487226937713422,-0.0330679173666064,-255.554730885959,"CHH","10:3949633:3958680","CGI"]
[10,4046661,4046758,98,20,0.102247215980386,0.26630125015466,-0.164054034174274,-95.5402405073208,"CHH","10:4044767:4046767","CGI_shore"]
[10,4046661,4046758,98,20,0.102247215980386,0.26630125015466,-0.164054034174274,-95.5402405073208,"CHH","10:4045890:4047891","CGI_shore"]
[10,4213318,4213387,70,29,0.0176126354984783,0.160143127805013,-0.142530492306535,-146.040019914411,"CHH","10:4211563:4213564","CGI_shore"]
[10,4213318,4213387,70,29,0.0176126354984783,0.160143127805013,-0.142530492306535,-146.040019914411,"CHH","10:4212281:4214281","CGI_shore"]
[10,4213318,4213387,70,29,0.0176126354984783,0.160143127805013,-0.142530492306535,-146.040019914411,"CHH","Os10g0162854","utr3","Os10g0162854","Similar to OSIGBa0106P14.3 protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[10,4213318,4213387,70,29,0.0176126354984783,0.160143127805013,-0.142530492306535,-146.040019914411,"CHH","10:4212993:4213402","CGI"]
[10,4213318,4213387,70,29,0.0176126354984783,0.160143127805013,-0.142530492306535,-146.040019914411,"CHH","Os10g0162854","exon","Os10g0162854","Similar to OSIGBa0106P14.3 protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[10,4252548,4252763,216,89,0.00487253794122319,0.0536203343905303,-0.0487477964493071,-510.417273087448,"CHH","Os10g0162980","exon","Os10g0162980","Similar to Anthocyanidin 5,3-O-glucosyltransferase && sp|D3UAG7|U88F3_PYRCO UDP-glycosyltransferase 88F3 OS=Pyrus communis OX=23211 GN=UGT88F3 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[10,4252548,4252763,216,89,0.00487253794122319,0.0536203343905303,-0.0487477964493071,-510.417273087448,"CHH","Os10g0162980","utr3","Os10g0162980","Similar to Anthocyanidin 5,3-O-glucosyltransferase && sp|D3UAG7|U88F3_PYRCO UDP-glycosyltransferase 88F3 OS=Pyrus communis OX=23211 GN=UGT88F3 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[10,4252548,4252763,216,89,0.00487253794122319,0.0536203343905303,-0.0487477964493071,-510.417273087448,"CHH","10:4252457:4254457","CGI_shore"]
[10,4252548,4252763,216,89,0.00487253794122319,0.0536203343905303,-0.0487477964493071,-510.417273087448,"CHH","10:4252564:4254565","CGI_shore"]
[10,4252548,4252763,216,89,0.00487253794122319,0.0536203343905303,-0.0487477964493071,-510.417273087448,"CHH","10:4242886:4252564","CGI"]
[10,4313815,4313945,131,20,0.15639072550241,0.376942015705844,-0.220551290203434,-99.2601060963579,"CG","10:4312324:4314324","CGI_shore"]
[10,4313815,4313945,131,20,0.15639072550241,0.376942015705844,-0.220551290203434,-99.2601060963579,"CG","10:4313925:4315925","CGI_shore"]
[10,4327876,4327927,52,16,0.0810160997781026,0.281254023433691,-0.200237923655588,-71.355946364307,"CHH","10:4327044:4329045","CGI_shore"]
[10,4327876,4327927,52,16,0.0810160997781026,0.281254023433691,-0.200237923655588,-71.355946364307,"CHH","Os10g0163290","intron","ABC TRANSPORTER G FAMILY MEMBER 24","Similar to ABC-2 type transporter family protein && sp|H9BZ66|ABCG1_PETHY ABC transporter G family member 1 OS=Petunia hybrida OX=4102 GN=ABCG1 PE=2 SV=1 && PF00005:ABC transporter"]
[10,4327876,4327927,52,16,0.0810160997781026,0.281254023433691,-0.200237923655588,-71.355946364307,"CHH","Os10g0163300","intron","Os10g0163300","Hypothetical protein && sp|H9BZ66|ABCG1_PETHY ABC transporter G family member 1 OS=Petunia hybrida OX=4102 GN=ABCG1 PE=2 SV=1 && -"]
[10,4636559,4636656,98,9,0.105625946600478,0.279538338312941,-0.173912391712463,-47.8205148451706,"CHG","10:4635438:4637438","CGI_shore"]
[10,4803894,4804124,231,34,0.377317147879097,0.636034750370469,-0.258717602491372,-204.475298424723,"CHG","Os10g0170000","intron","Os10g0170000","Nucleotide-sensitive chloride conductance regulator family protein && sp|Q9LVA7|ICLN_ARATH Chloride conductance regulatory protein ICln OS=Arabidopsis thaliana OX=3702 GN=At5g62290 PE=2 SV=1 && PF03517:Regulator of volume decrease after cellular swelling"]
[10,4803894,4804124,231,34,0.377317147879097,0.636034750370469,-0.258717602491372,-204.475298424723,"CHG","10:4802908:4804908","CGI_shore"]
[10,5903408,5903534,127,44,0.648361909166316,0.821922386769337,-0.173560477603021,-220.284056473969,"CG","10:5902869:5903845","CGI"]
[10,5934789,5934907,119,45,0.0448319233812115,0.219417092998763,-0.174585169617551,-269.117817957235,"CHH","10:5934207:5936208","CGI_shore"]
[10,5934789,5934907,119,45,0.0448319233812115,0.219417092998763,-0.174585169617551,-269.117817957235,"CHH","10:5934754:5935339","CGI"]
[10,6023063,6023118,56,14,0.0162203854972471,0.072994452612025,-0.0567740671147779,-72.0757520139998,"CHH","10:6021714:6023714","CGI_shore"]
[10,6023063,6023118,56,14,0.0162203854972471,0.072994452612025,-0.0567740671147779,-72.0757520139998,"CHH","Os10g0187701","promoter","Os10g0187701","Myb/SANT-like domain domain containing protein && - && PF12776:Myb/SANT-like DNA-binding domain"]
[10,6126669,6126764,96,11,0.325301769127218,0.691426683037185,-0.366124913909967,-49.7713565038147,"CHG","10:6125955:6127956","CGI_shore"]
[10,6562744,6562871,128,14,0.229534514014487,0.696381020103968,-0.466846506089482,-77.8347209154988,"CHG","10:6561710:6563711","CGI_shore"]
[10,6841458,6841510,53,14,0.0582041182458303,0.172692112282568,-0.114487994036737,-78.4768577964472,"CHH","10:6839664:6842461","CGI"]
[10,6841458,6841510,53,14,0.0582041182458303,0.172692112282568,-0.114487994036737,-78.4768577964472,"CHH","Os10g0198100","promoter","Os10g0198100","Conserved hypothetical protein && - && -"]
[10,6930168,6930310,143,22,0.510849334051227,0.744324503082325,-0.233475169031098,-103.514331606497,"CHG","10:6919978:6936184","CGI"]
[10,7123339,7123421,83,33,0.0625206819774618,0.147295670385395,-0.0847749884079332,-165.91110831154,"CHH","Os10g0200800","intron","Os10g0200800","Similar to Phosphatidylinositol glycan synthesis class F protein && sp|Q07326|PIGF_HUMAN Phosphatidylinositol-glycan biosynthesis class F protein OS=Homo sapiens OX=9606 GN=PIGF PE=1 SV=1 && PF06699:GPI biosynthesis protein family Pig-F"]
[10,7123339,7123421,83,33,0.0625206819774618,0.147295670385395,-0.0847749884079332,-165.91110831154,"CHH","10:7035079:7215631","CGI"]
[10,7140381,7140539,159,31,0.266365852398772,0.55838117395371,-0.292015321554939,-197.292659364453,"CHG","Os10g0200800","intron","Os10g0200800","Similar to Phosphatidylinositol glycan synthesis class F protein && sp|Q07326|PIGF_HUMAN Phosphatidylinositol-glycan biosynthesis class F protein OS=Homo sapiens OX=9606 GN=PIGF PE=1 SV=1 && PF06699:GPI biosynthesis protein family Pig-F"]
[10,7140381,7140539,159,31,0.266365852398772,0.55838117395371,-0.292015321554939,-197.292659364453,"CHG","10:7035079:7215631","CGI"]
[10,7553567,7553818,252,52,0.0418446665285321,0.247932873234667,-0.206088206706135,-247.308213563032,"CHH","10:7553433:7555434","CGI_shore"]
[10,7553567,7553818,252,52,0.0418446665285321,0.247932873234667,-0.206088206706135,-247.308213563032,"CHH","10:7552175:7554175","CGI_shore"]
[10,7564665,7564842,178,20,0.18609059704575,0.405443096606326,-0.219352499560576,-96.8144097531568,"CHG","10:7563828:7565829","CGI_shore"]
[10,7564665,7564842,178,20,0.18609059704575,0.405443096606326,-0.219352499560576,-96.8144097531568,"CHG","10:7564653:7565596","CGI"]
[10,7860292,7860369,78,19,0.293468795924947,0.620914243473994,-0.327445447549047,-95.2567337132238,"CHG","10:7858495:7860496","CGI_shore"]
[10,7860292,7860369,78,19,0.293468795924947,0.620914243473994,-0.327445447549047,-95.2567337132238,"CHG","10:7860212:7860415","CGI"]
[10,7861698,7861752,55,19,0.0253606250648819,0.114513687793069,-0.0891530627281872,-81.6597194039757,"CHH","10:7860415:7862416","CGI_shore"]
[10,8357736,8357849,114,27,0.017093530541197,0.226222923856949,-0.209129393315752,-119.205677568871,"CHH","10:8311012:8402718","CGI"]
[10,8891908,8891983,76,17,0.153089772749395,0.337516263792669,-0.184426491043274,-78.0400157330821,"CG","Os10g0323000","exon","Os10g0323000","Conserved hypothetical protein && sp|Q7XFU9|Y1030_ORYSJ B3 domain-containing protein Os10g0323000 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0323000 PE=2 SV=1 && -"]
[10,8891908,8891983,76,17,0.153089772749395,0.337516263792669,-0.184426491043274,-78.0400157330821,"CG","Os10g0323000","utr5","Os10g0323000","Conserved hypothetical protein && sp|Q7XFU9|Y1030_ORYSJ B3 domain-containing protein Os10g0323000 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0323000 PE=2 SV=1 && -"]
[10,8891908,8891983,76,17,0.153089772749395,0.337516263792669,-0.184426491043274,-78.0400157330821,"CG","10:8891580:8893581","CGI_shore"]
[10,8891908,8891983,76,17,0.153089772749395,0.337516263792669,-0.184426491043274,-78.0400157330821,"CG","10:8891811:8892075","CGI"]
[10,8976417,8976511,95,26,0.0479378116914679,0.148941540927975,-0.101003729236508,-107.619764380759,"CHH","10:8975376:8976554","CGI"]
[10,9208571,9208701,131,21,0.410812733888374,0.67488481828487,-0.264072084396497,-94.0454817174363,"CHG","10:9208222:9215163","CGI"]
[10,9566410,9566462,53,15,0.0218987323392273,0.120262817287281,-0.09836408494805329,-95.0371426667701,"CHH","10:9564700:9566700","CGI_shore"]
[10,9566410,9566462,53,15,0.0218987323392273,0.120262817287281,-0.09836408494805329,-95.0371426667701,"CHH","10:9565484:9567485","CGI_shore"]
[10,9873176,9873242,67,5,0.626205944481575,0.797685217422249,-0.171479272940674,-22.6284083496231,"CG","10:9872887:9874887","CGI_shore"]
[10,10201652,10201731,80,37,0.0605959060298908,0.163897245875548,-0.103301339845658,-130.344336130245,"CG","10:10201584:10201806","CGI"]
[10,10201652,10201731,80,37,0.0605959060298908,0.163897245875548,-0.103301339845658,-130.344336130245,"CG","10:10201718:10203718","CGI_shore"]
[10,10564991,10565045,55,9,0.17245003530332,0.345242707840309,-0.172792672536989,-39.666992846871,"CHG","10:10563674:10565675","CGI_shore"]
[10,10564991,10565045,55,9,0.17245003530332,0.345242707840309,-0.172792672536989,-39.666992846871,"CHG","Os10g0349300","promoter","hybrid proline- or glycine-rich protein 9","Similar to Root-specific protein (RCc2 protein) && sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays OX=4577 PE=2 SV=1 && PF14547:Hydrophobic seed protein"]
[10,10564991,10565045,55,9,0.17245003530332,0.345242707840309,-0.172792672536989,-39.666992846871,"CHG","10:10564545:10566545","CGI_shore"]
[10,10564991,10565045,55,9,0.17245003530332,0.345242707840309,-0.172792672536989,-39.666992846871,"CHG","10:10564752:10565148","CGI"]
[10,10785695,10785771,77,18,0.0944268179569713,0.256209031956167,-0.161782213999196,-86.2394164273838,"CHH","10:10785681:10787682","CGI_shore"]
[10,10981669,10981727,59,7,0.584455351785016,0.894311120177267,-0.309855768392251,-34.3305152305142,"CG","10:10979524:10982411","CGI"]
[10,10998755,10999030,276,66,0.263380364508701,0.484456118995169,-0.221075754486469,-309.198399722976,"CG","10:10996684:10999936","CGI"]
[10,10998755,10999030,276,66,0.263380364508701,0.484456118995169,-0.221075754486469,-309.198399722976,"CG","Os10g0358700","promoter","Os10g0358700","Pentatricopeptide repeat domain containing protein && sp|Q9ZU29|PP139_ARATH Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana OX=3702 GN=At2g01390/At2g01380 PE=2 SV=2 && -"]
[10,11204236,11204438,203,27,0.242130446554936,0.540372030658667,-0.298241584103731,-193.662355223515,"CG","Os10g0362300","promoter","HISTIDINE KINASE 5","Similar to Histidine kinase 3 && sp|A1A697|OHK5_ORYSJ Probable histidine kinase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=HK5 PE=2 SV=1 && -"]
[10,11204236,11204438,203,27,0.242130446554936,0.540372030658667,-0.298241584103731,-193.662355223515,"CG","10:11203425:11205426","CGI_shore"]
[10,11717855,11717918,64,20,0.711272558289525,0.861924717427402,-0.150652159137877,-77.0530315620683,"CG","10:11717526:11718316","CGI"]
[10,11845328,11845518,191,24,0.288084310620156,0.656363372378967,-0.368279061758811,-130.088388495272,"CG","10:11845067:11847067","CGI_shore"]
[10,11875597,11875655,59,19,0.0857258899336511,0.152110034304426,-0.0663841443707749,-95.5467942829714,"CHH","Os10g0374450","intron","Os10g0374450","Similar to Barren inflorescence2-like serine/threonine protein kinase (Fragment) && sp|Q2QM77|PID_ORYSJ Protein kinase PINOID OS=Oryza sativa subsp. japonica OX=39947 GN=PID PE=2 SV=1 && -"]
[10,11875597,11875655,59,19,0.0857258899336511,0.152110034304426,-0.0663841443707749,-95.5467942829714,"CHH","10:11874287:11876288","CGI_shore"]
[10,11875597,11875655,59,19,0.0857258899336511,0.152110034304426,-0.0663841443707749,-95.5467942829714,"CHH","10:11874534:11876534","CGI_shore"]
[10,11915983,11916048,66,26,0.0345554694398051,0.11555932780576,-0.0810038583659546,-121.552347141702,"CHH","10:11915974:11917975","CGI_shore"]
[10,11990058,11990182,125,53,0.0506096245643235,0.119033277801974,-0.0684236532376507,-194.441102860557,"CG","10:11982219:11990563","CGI"]
[10,11990058,11990182,125,53,0.0506096245643235,0.119033277801974,-0.0684236532376507,-194.441102860557,"CG","Os10g0376400","exon","Os10g0376400","Similar to Phosphate-induced protein 1 conserved region containing protein && sp|Q9C6E4|EXOL1_ARATH Protein EXORDIUM-like 1 OS=Arabidopsis thaliana OX=3702 GN=EXL1 PE=2 SV=1 && PF04674:Phosphate-induced protein 1 conserved region"]
[10,12832545,12832722,178,41,0.023140802046694,0.227867806427657,-0.204727004380963,-219.513774631927,"CHH","10:12830971:12832971","CGI_shore"]
[10,12832545,12832722,178,41,0.023140802046694,0.227867806427657,-0.204727004380963,-219.513774631927,"CHH","10:12831860:12833860","CGI_shore"]
[10,12832545,12832722,178,41,0.023140802046694,0.227867806427657,-0.204727004380963,-219.513774631927,"CHH","Os10g0388500","promoter","Os10g0388500","Conserved hypothetical protein && - && -"]
[10,13063320,13063386,67,6,0.141237648325041,0.593356858635434,-0.452119210310394,-31.3095143726375,"CHG","10:13059182:13063465","CGI"]
[10,13063320,13063386,67,6,0.141237648325041,0.593356858635434,-0.452119210310394,-31.3095143726375,"CHG","10:13062510:13064510","CGI_shore"]
[10,13103873,13103970,98,19,0.511040732165662,0.882017393127629,-0.370976660961967,-80.6744201242582,"CG","10:13102585:13104586","CGI_shore"]
[10,13103873,13103970,98,19,0.511040732165662,0.882017393127629,-0.370976660961967,-80.6744201242582,"CG","Os10g0392800","promoter","Os10g0392800","Similar to esterase && sp|Q9STM6|GDL57_ARATH GDSL esterase/lipase At3g48460 OS=Arabidopsis thaliana OX=3702 GN=At3g48460 PE=2 SV=1 && -"]
[10,13129386,13129509,124,47,0.0777210383799326,0.1728271405046,-0.0951061021246671,-218.554265898439,"CG","Os10g0393800","promoter","GDSL ESTERASE/LIPASE PROTEIN 105","Lipase, GDSL domain containing protein && sp|Q9FPE4|GDL12_ARATH GDSL esterase/lipase At1g28660 OS=Arabidopsis thaliana OX=3702 GN=At1g28660 PE=2 SV=1 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[10,13137760,13137869,110,16,0.589908628760117,0.876931682184206,-0.287023053424089,-118.098026542529,"CG","10:13136907:13138907","CGI_shore"]
[10,13147665,13147731,67,24,0.0648246544055709,0.144128662527135,-0.0793040081215641,-109.444759060778,"CHH","10:13147553:13149554","CGI_shore"]
[10,13882821,13883067,247,46,0.402615726144722,0.640206053986683,-0.237590327841961,-255.466828936953,"CG","10:13880904:13882904","CGI_shore"]
[10,13882821,13883067,247,46,0.402615726144722,0.640206053986683,-0.237590327841961,-255.466828936953,"CG","Os10g0406300","utr3","RICE DOF DAILY FLUCTUATIONS 3","Similar to AOBP (Ascorbate oxidase promoter-binding protein) && sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2 && -"]
[10,13882821,13883067,247,46,0.402615726144722,0.640206053986683,-0.237590327841961,-255.466828936953,"CG","Os10g0406300","exon","RICE DOF DAILY FLUCTUATIONS 3","Similar to AOBP (Ascorbate oxidase promoter-binding protein) && sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2 && -"]
[10,13882821,13883067,247,46,0.402615726144722,0.640206053986683,-0.237590327841961,-255.466828936953,"CG","Os10g0406350","utr5","Os10g0406350","Hypothetical gene && sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2 && PF02701:Dof domain, zinc finger"]
[10,13882821,13883067,247,46,0.402615726144722,0.640206053986683,-0.237590327841961,-255.466828936953,"CG","Os10g0406350","exon","Os10g0406350","Hypothetical gene && sp|Q8W1E3|CDF1_ARATH Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2 && PF02701:Dof domain, zinc finger"]
[10,13882821,13883067,247,46,0.402615726144722,0.640206053986683,-0.237590327841961,-255.466828936953,"CG","10:13882905:13884073","CGI"]
[10,13906581,13906641,61,10,0.0380699210848642,0.139788216881077,-0.101718295796212,-40.6708917086911,"CG","10:13905592:13907593","CGI_shore"]
[10,13906581,13906641,61,10,0.0380699210848642,0.139788216881077,-0.101718295796212,-40.6708917086911,"CG","Os10g0406701","promoter","Os10g0406701","Conserved hypothetical protein && - && -"]
[10,13906581,13906641,61,10,0.0380699210848642,0.139788216881077,-0.101718295796212,-40.6708917086911,"CG","Os10g0406600","exon","Os10g0406600","Complex 1 LYR protein family protein && - && -"]
[10,13906581,13906641,61,10,0.0380699210848642,0.139788216881077,-0.101718295796212,-40.6708917086911,"CG","Os10g0406600","utr5","Os10g0406600","Complex 1 LYR protein family protein && - && -"]
[10,13906581,13906641,61,10,0.0380699210848642,0.139788216881077,-0.101718295796212,-40.6708917086911,"CG","Os10g0406600","TSS","Os10g0406600","Complex 1 LYR protein family protein && - && -"]
[10,13906581,13906641,61,10,0.0380699210848642,0.139788216881077,-0.101718295796212,-40.6708917086911,"CG","Os10g0406600","promoter","Os10g0406600","Complex 1 LYR protein family protein && - && -"]
[10,14002610,14002672,63,17,0.0809688691608462,0.253661392541154,-0.172692523380308,-87.8777208701229,"CHH","10:14001574:14003574","CGI_shore"]
[10,14002610,14002672,63,17,0.0809688691608462,0.253661392541154,-0.172692523380308,-87.8777208701229,"CHH","10:14001979:14003979","CGI_shore"]
[10,14002610,14002672,63,17,0.0809688691608462,0.253661392541154,-0.172692523380308,-87.8777208701229,"CHH","10:14002225:14002817","CGI"]
[10,14049859,14049912,54,5,0.37888069148431,0.615590251027655,-0.236709559543345,-22.5452237992083,"CHG","10:14049616:14049950","CGI"]
[10,14070032,14070135,104,29,0.115473917937869,0.220846984304235,-0.105373066366366,-136.672610153948,"CHH","10:14068297:14070298","CGI_shore"]
[10,14090591,14090686,96,4,0.526499548004065,0.874681376545441,-0.348181828541376,-18.0938614087513,"CG","10:14090262:14092262","CGI_shore"]
[10,14090591,14090686,96,4,0.526499548004065,0.874681376545441,-0.348181828541376,-18.0938614087513,"CG","10:14089338:14091338","CGI_shore"]
[10,14172126,14172362,237,31,0.711684056393073,0.902149186123819,-0.190465129730746,-134.049222162891,"CG","Os10g0409400","exon","polygalacturonase isoenzyme 1 beta subunit, BURP domain-containing protein 16, beta subunit of polygalacturonase 1, polygalacturonase 1 beta subunit, non-catalytic PG1beta subunit","beta subunit of polygalacturonase 1, Abiotic stress respons && sp|Q7XES5|BURPG_ORYSJ BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=BURP16 PE=2 SV=1 && PF03181:BURP domain"]
[10,14172126,14172362,237,31,0.711684056393073,0.902149186123819,-0.190465129730746,-134.049222162891,"CG","10:14172116:14172400","CGI"]
[10,14215464,14215739,276,107,0.0899096935337637,0.300606349980788,-0.210696656447025,-843.941541668985,"CHH","10:14215192:14217193","CGI_shore"]
[10,14215464,14215739,276,107,0.0899096935337637,0.300606349980788,-0.210696656447025,-843.941541668985,"CHH","10:14215493:14217493","CGI_shore"]
[10,14694340,14694513,174,28,0.234232388204693,0.387469031717164,-0.153236643512471,-147.668688847917,"CHG","10:14692967:14694967","CGI_shore"]
[10,14694340,14694513,174,28,0.234232388204693,0.387469031717164,-0.153236643512471,-147.668688847917,"CHG","10:14694058:14696059","CGI_shore"]
[10,15108016,15108088,73,24,0.0296222725608755,0.215273422319693,-0.185651149758818,-145.605019372705,"CHH","10:15107105:15109105","CGI_shore"]
[10,15108016,15108088,73,24,0.0296222725608755,0.215273422319693,-0.185651149758818,-145.605019372705,"CHH","10:15107673:15109674","CGI_shore"]
[10,15177631,15177840,210,34,0.0287144023595603,0.104429912230373,-0.0757155098708125,-194.875597735461,"CG","10:15177727:15179727","CGI_shore"]
[10,15191394,15191452,59,37,0.0812251261447847,0.212537593040262,-0.131312466895477,-190.31827004522,"CHH","Os10g0427100","exon","Os10g0427100","Conserved hypothetical protein && - && -"]
[10,15191394,15191452,59,37,0.0812251261447847,0.212537593040262,-0.131312466895477,-190.31827004522,"CHH","Os10g0427100","utr3","Os10g0427100","Conserved hypothetical protein && - && -"]
[10,15191394,15191452,59,37,0.0812251261447847,0.212537593040262,-0.131312466895477,-190.31827004522,"CHH","10:15190200:15191531","CGI"]
[10,15332358,15332436,79,14,0.392189119630647,0.550305129004178,-0.158116009373531,-56.9982046426155,"CHG","Os10g0430700","intron","MATH-BTB protein 46, MDC protein with a BTB domain 46, MDC protein having BTB domain 46","Conserved hypothetical protein && - && -"]
[10,15332358,15332436,79,14,0.392189119630647,0.550305129004178,-0.158116009373531,-56.9982046426155,"CHG","10:15331192:15333193","CGI_shore"]
[10,15332358,15332436,79,14,0.392189119630647,0.550305129004178,-0.158116009373531,-56.9982046426155,"CHG","Os10g0430750","exon","Os10g0430750","Hypothetical conserved gene && - && -"]
[10,15332358,15332436,79,14,0.392189119630647,0.550305129004178,-0.158116009373531,-56.9982046426155,"CHG","10:15331946:15333329","CGI"]
[10,15332358,15332436,79,14,0.392189119630647,0.550305129004178,-0.158116009373531,-56.9982046426155,"CHG","Os10g0430750","utr5","Os10g0430750","Hypothetical conserved gene && - && -"]
[10,15332587,15332830,244,38,0.196326319885051,0.444426639594655,-0.248100319709604,-230.762186370959,"CG","Os10g0430700","intron","MATH-BTB protein 46, MDC protein with a BTB domain 46, MDC protein having BTB domain 46","Conserved hypothetical protein && - && -"]
[10,15332587,15332830,244,38,0.196326319885051,0.444426639594655,-0.248100319709604,-230.762186370959,"CG","10:15331192:15333193","CGI_shore"]
[10,15332587,15332830,244,38,0.196326319885051,0.444426639594655,-0.248100319709604,-230.762186370959,"CG","10:15331946:15333329","CGI"]
[10,15332587,15332830,244,38,0.196326319885051,0.444426639594655,-0.248100319709604,-230.762186370959,"CG","Os10g0430750","promoter","Os10g0430750","Hypothetical conserved gene && - && -"]
[10,15332659,15332806,148,13,0.0757196366339014,0.302238990915866,-0.226519354281964,-67.0645269449286,"CHG","Os10g0430700","intron","MATH-BTB protein 46, MDC protein with a BTB domain 46, MDC protein having BTB domain 46","Conserved hypothetical protein && - && -"]
[10,15332659,15332806,148,13,0.0757196366339014,0.302238990915866,-0.226519354281964,-67.0645269449286,"CHG","10:15331192:15333193","CGI_shore"]
[10,15332659,15332806,148,13,0.0757196366339014,0.302238990915866,-0.226519354281964,-67.0645269449286,"CHG","10:15331946:15333329","CGI"]
[10,15332659,15332806,148,13,0.0757196366339014,0.302238990915866,-0.226519354281964,-67.0645269449286,"CHG","Os10g0430750","promoter","Os10g0430750","Hypothetical conserved gene && - && -"]
[10,15444517,15444580,64,27,0.147100308874836,0.209991298790584,-0.062890989915748,-106.175994309366,"CG","Os10g0433200","exon","Os10g0433200","Hypothetical conserved gene && - && -"]
[10,15444517,15444580,64,27,0.147100308874836,0.209991298790584,-0.062890989915748,-106.175994309366,"CG","10:15435794:15452975","CGI"]
[10,15493231,15493360,130,25,0.161996005281798,0.391402165566557,-0.229406160284759,-100.042630551865,"CG","Os10g0434801","promoter","Os10g0434801","Hypothetical conserved gene && - && -"]
[10,15493231,15493360,130,25,0.161996005281798,0.391402165566557,-0.229406160284759,-100.042630551865,"CG","10:15492966:15493870","CGI"]
[10,15493231,15493360,130,25,0.161996005281798,0.391402165566557,-0.229406160284759,-100.042630551865,"CG","10:15493063:15495063","CGI_shore"]
[10,15493231,15493360,130,25,0.161996005281798,0.391402165566557,-0.229406160284759,-100.042630551865,"CG","Os10g0434900","promoter","Os10g0434900","Similar to Protein STAR1 && sp|Q0D9V6|STAR1_ORYSJ Protein STAR1 OS=Oryza sativa subsp. japonica OX=39947 GN=STAR1 PE=1 SV=1 && -"]
[10,15831897,15831956,60,14,0.470511359000786,0.799849972837727,-0.329338613836941,-66.2236784234449,"CG","10:15827058:15832215","CGI"]
[10,15831897,15831956,60,14,0.470511359000786,0.799849972837727,-0.329338613836941,-66.2236784234449,"CG","10:15831088:15833088","CGI_shore"]
[10,15831897,15831956,60,14,0.470511359000786,0.799849972837727,-0.329338613836941,-66.2236784234449,"CG","10:15831922:15833922","CGI_shore"]
[10,16070084,16070209,126,25,0.155836954419056,0.474692705109373,-0.318855750690318,-136.165372370519,"CHH","10:16069050:16070768","CGI"]
[10,16070084,16070209,126,25,0.155836954419056,0.474692705109373,-0.318855750690318,-136.165372370519,"CHH","10:16069799:16071799","CGI_shore"]
[10,16484475,16484757,283,44,0.657086007243607,0.847125434208086,-0.190039426964479,-283.803244391625,"CG","10:16484386:16484954","CGI"]
[10,16484601,16484733,133,16,0.283084649420701,0.531669987286468,-0.248585337865767,-85.4182312389113,"CHG","10:16484386:16484954","CGI"]
[10,17122887,17122938,52,5,0.0403100935022333,0.155352826261269,-0.115042732759036,-22.9172025231195,"CHG","10:17122221:17124221","CGI_shore"]
[10,17122887,17122938,52,5,0.0403100935022333,0.155352826261269,-0.115042732759036,-22.9172025231195,"CHG","Os10g0464100","intron","OsWD40-176","WD40 repeat-like domain containing protein && sp|Q0VA16|WDR70_XENTR WD repeat-containing protein 70 OS=Xenopus tropicalis OX=8364 GN=wdr70 PE=2 SV=1 && -"]
[10,17180059,17180128,70,17,0.209974070624984,0.363299865951252,-0.153325795326269,-69.3795212913638,"CG","10:17170984:17182944","CGI"]
[10,17180059,17180128,70,17,0.209974070624984,0.363299865951252,-0.153325795326269,-69.3795212913638,"CG","Os10g0465700","promoter","beta-amylase 1","Similar to Beta-amylase PCT-BMYI (EC 3.2.1.2) && sp|Q9AV88|BAMY1_ORYSJ Beta-amylase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BAMY1 PE=1 SV=1 && PF01373:Glycosyl hydrolase family 14"]
[10,17389458,17389606,149,30,0.129381273360162,0.372883463287287,-0.243502189927125,-167.652342312842,"CHG","10:17388736:17390737","CGI_shore"]
[10,17389458,17389606,149,30,0.129381273360162,0.372883463287287,-0.243502189927125,-167.652342312842,"CHG","Os10g0470100","exon","Os10g0470100","Conserved hypothetical protein && - && -"]
[10,17389458,17389606,149,30,0.129381273360162,0.372883463287287,-0.243502189927125,-167.652342312842,"CHG","Os10g0470100","utr3","Os10g0470100","Conserved hypothetical protein && - && -"]
[10,17389473,17389605,133,34,0.245492085271421,0.519630853788616,-0.274138768517195,-212.749323251403,"CG","10:17388736:17390737","CGI_shore"]
[10,17389473,17389605,133,34,0.245492085271421,0.519630853788616,-0.274138768517195,-212.749323251403,"CG","Os10g0470100","exon","Os10g0470100","Conserved hypothetical protein && - && -"]
[10,17389473,17389605,133,34,0.245492085271421,0.519630853788616,-0.274138768517195,-212.749323251403,"CG","Os10g0470100","utr3","Os10g0470100","Conserved hypothetical protein && - && -"]
[10,17540452,17540546,95,23,0.120568985660238,0.267822625396058,-0.14725363973582,-109.406988499483,"CHH","10:17538662:17540663","CGI_shore"]
[10,17540648,17540701,54,17,0.0689002537269291,0.231437564818124,-0.162537311091195,-99.826983339933,"CHH","10:17538662:17540663","CGI_shore"]
[10,17601325,17601552,228,47,0.0345204006699769,0.146699061633554,-0.112178660963577,-273.967917845627,"CG","Os10g0473800","exon","Os10g0473800","Similar to protoporphyrinogen IX oxidase (plastidic)1 && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17601325,17601552,228,47,0.0345204006699769,0.146699061633554,-0.112178660963577,-273.967917845627,"CG","Os10g0473875","exon","Os10g0473875","Hypothetical protein && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17601325,17601552,228,47,0.0345204006699769,0.146699061633554,-0.112178660963577,-273.967917845627,"CG","Os10g0473875","TSS","Os10g0473875","Hypothetical protein && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17601325,17601552,228,47,0.0345204006699769,0.146699061633554,-0.112178660963577,-273.967917845627,"CG","Os10g0473875","promoter","Os10g0473875","Hypothetical protein && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17601379,17601556,178,29,0.016578189420353,0.100699164650308,-0.084120975229955,-133.493100694438,"CHG","Os10g0473800","exon","Os10g0473800","Similar to protoporphyrinogen IX oxidase (plastidic)1 && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17601379,17601556,178,29,0.016578189420353,0.100699164650308,-0.084120975229955,-133.493100694438,"CHG","Os10g0473875","exon","Os10g0473875","Hypothetical protein && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17601379,17601556,178,29,0.016578189420353,0.100699164650308,-0.084120975229955,-133.493100694438,"CHG","Os10g0473875","TSS","Os10g0473875","Hypothetical protein && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17601379,17601556,178,29,0.016578189420353,0.100699164650308,-0.084120975229955,-133.493100694438,"CHG","Os10g0473875","promoter","Os10g0473875","Hypothetical protein && sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PPOX1 PE=2 SV=1 && -"]
[10,17831998,17832098,101,21,0.00661024597834074,0.132346663921338,-0.125736417942997,-130.029016436684,"CHH","10:17830703:17832704","CGI_shore"]
[10,17873446,17873557,112,25,0.304183478779419,0.569786709281954,-0.265603230502535,-115.333627000739,"CG","10:17872554:17874554","CGI_shore"]
[10,17873446,17873557,112,25,0.304183478779419,0.569786709281954,-0.265603230502535,-115.333627000739,"CG","Os10g0477900","exon","Os10g0477900","Similar to NAD dependent epimerase/dehydratase family protein, expressed && sp|D7U6G6|ANRPN_VITVI Anthocyanidin reductase ((2S)-flavan-3-ol-forming) OS=Vitis vinifera OX=29760 GN=ANR PE=3 SV=1 && PF01073:3-beta hydroxysteroid dehydrogenase/isomerase family"]
[10,18063007,18063165,159,25,0.570537157529315,0.784877498923908,-0.214340341394593,-122.169857097916,"CG","10:18062590:18064590","CGI_shore"]
[10,18063007,18063165,159,25,0.570537157529315,0.784877498923908,-0.214340341394593,-122.169857097916,"CG","10:18062676:18064677","CGI_shore"]
[10,18063007,18063165,159,25,0.570537157529315,0.784877498923908,-0.214340341394593,-122.169857097916,"CG","Target=(CATG)n:1-85;Class=Simple_repeat","repeat"]
[10,18382486,18382593,108,36,0.0647849673027786,0.215793519882327,-0.151008552579549,-150.535736672586,"CG","10:18382304:18387276","CGI"]
[10,18443215,18443335,121,36,0.0585613079736636,0.165105110812708,-0.106543802839044,-185.920933263658,"CHH","Os10g0487400","promoter","Os10g0487400","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 && PF13639:Ring finger domain|PF14369:zinc-ribbon"]
[10,18443215,18443335,121,36,0.0585613079736636,0.165105110812708,-0.106543802839044,-185.920933263658,"CHH","10:18442371:18444372","CGI_shore"]
[10,18443215,18443335,121,36,0.0585613079736636,0.165105110812708,-0.106543802839044,-185.920933263658,"CHH","10:18443309:18445309","CGI_shore"]
[10,18488154,18488254,101,12,0.423824094609283,0.616684947400679,-0.192860852791396,-55.2564755094217,"CHG","10:18486655:18488656","CGI_shore"]
[10,18488154,18488254,101,12,0.423824094609283,0.616684947400679,-0.192860852791396,-55.2564755094217,"CHG","Os10g0488300","exon","Os10g0488300","Vps52/Sac2 family protein && sp|Q94KD3|VP52A_ARATH Vacuolar protein sorting-associated protein 52 A OS=Arabidopsis thaliana OX=3702 GN=VPS52 PE=1 SV=1 && PF04129:Vps52 / Sac2 family"]
[10,19471593,19471663,71,17,0.0547191250136797,0.151859959564323,-0.0971408345506435,-87.8653165572556,"CHH","Os10g0508300","intron","YABBY3","YABBY family transcription factor, Leaf developmen && sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB3 PE=2 SV=1 && PF04690:YABBY protein"]
[10,19824998,19825224,227,78,0.0937282620653861,0.291182674138094,-0.197454412072707,-501.107388463348,"CG","Os10g0514300","promoter","Os10g0514300","Similar to Transposon protein && sp|Q9SRQ1|C89A9_ARATH Cytochrome P450 89A9 OS=Arabidopsis thaliana OX=3702 GN=CYP89A9 PE=2 SV=1 && -"]
[10,20163993,20164054,62,13,0.129376459305641,0.21267999852809,-0.0833035392224497,-45.387400166836,"CG","10:20158558:20166775","CGI"]
[10,20163993,20164054,62,13,0.129376459305641,0.21267999852809,-0.0833035392224497,-45.387400166836,"CG","Os10g0521100","promoter","actin depolymerizing factor 10","Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6) && sp|Q337A5|ADF10_ORYSJ Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF10 PE=2 SV=1 && PF00241:Cofilin/tropomyosin-type actin-binding protein"]
[10,20173688,20173754,67,23,0.468993463196745,0.604600381306129,-0.135606918109384,-92.3272422630982,"CG","10:20173323:20177010","CGI"]
[10,20173688,20173754,67,23,0.468993463196745,0.604600381306129,-0.135606918109384,-92.3272422630982,"CG","Os10g0521400","promoter","Os10g0521400","Alpha/beta hydrolase fold-1 domain containing protein && - && PF12697:Alpha/beta hydrolase family"]
[10,20459281,20459437,157,32,0.42761298880104,0.769381836891081,-0.34176884809004,-210.297289240262,"CG","10:20457384:20459385","CGI_shore"]
[10,20459281,20459437,157,32,0.42761298880104,0.769381836891081,-0.34176884809004,-210.297289240262,"CG","10:20457521:20460314","CGI"]
[10,20912751,20912862,112,18,0.00536641126331576,0.061292465979558,-0.0559260547162422,-130.818838776965,"CHH","10:20911917:20913918","CGI_shore"]
[10,21057992,21058044,53,19,0.0105687033419392,0.0458530410673378,-0.0352843377253986,-103.637198388432,"CHH","Os10g0540000","promoter","Os10g0540000","Similar to Zinc finger, C3HC4 type family protein, expressed && - && -"]
[10,21057992,21058044,53,19,0.0105687033419392,0.0458530410673378,-0.0352843377253986,-103.637198388432,"CHH","10:21056412:21058413","CGI_shore"]
[10,21057992,21058044,53,19,0.0105687033419392,0.0458530410673378,-0.0352843377253986,-103.637198388432,"CHH","10:21056752:21058752","CGI_shore"]
[10,21057992,21058044,53,19,0.0105687033419392,0.0458530410673378,-0.0352843377253986,-103.637198388432,"CHH","Os10g0540200","promoter","Os10g0540200","Similar to Selenium-binding protein-like && sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E96 PE=3 SV=1 && PF13041:PPR repeat family|PF01535:PPR repeat"]
[10,21099851,21099942,92,29,0.0135607203004043,0.16050544159784,-0.146944721297436,-174.642702739673,"CHH","10:21097982:21099982","CGI_shore"]
[10,21192136,21192199,64,9,0.0332370454920045,0.114205702097567,-0.0809686566055622,-69.1162077441124,"CHH","Os10g0542750","promoter","Os10g0542750","Hypothetical protein && - && PF03087:Arabidopsis protein of unknown function"]
[10,21464776,21464945,170,63,0.0799215453957735,0.218671214984993,-0.13874966958922,-334.695186718434,"CG","10:21459570:21466560","CGI"]
[10,21464776,21464945,170,63,0.0799215453957735,0.218671214984993,-0.13874966958922,-334.695186718434,"CG","Os10g0548600","promoter","BETA-EXPANSIN 9","Beta-expansin precursor && sp|Q7XCG7|EXPB9_ORYSJ Expansin-B9 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPB9 PE=2 SV=1 && PF03330:Lytic transglycolase|PF01357:Pollen allergen"]
[10,21518447,21518501,55,18,0.0242671139077836,0.0872300099498158,-0.0629628960420321,-77.2961414083955,"CHH","10:21517441:21519442","CGI_shore"]
[10,21518447,21518501,55,18,0.0242671139077836,0.0872300099498158,-0.0629628960420321,-77.2961414083955,"CHH","10:21517801:21519801","CGI_shore"]
[10,21521959,21522040,82,5,0.0756247042369286,0.329016164575144,-0.253391460338216,-23.5762940411547,"CG","10:21520513:21522514","CGI_shore"]
[10,21521959,21522040,82,5,0.0756247042369286,0.329016164575144,-0.253391460338216,-23.5762940411547,"CG","Os10g0549500","exon","Os10g0549500","Similar to Branched-chain-amino-acid aminotransferase && sp|K7QHS5|BCAT2_HUMLU Branched-chain amino acid aminotransferase 2, chloroplastic OS=Humulus lupulus OX=3486 GN=BCAT2 PE=1 SV=1 && PF01063:Amino-transferase class IV"]
[10,21521959,21522040,82,5,0.0756247042369286,0.329016164575144,-0.253391460338216,-23.5762940411547,"CG","Os10g0549500","intron","Os10g0549500","Similar to Branched-chain-amino-acid aminotransferase && sp|K7QHS5|BCAT2_HUMLU Branched-chain amino acid aminotransferase 2, chloroplastic OS=Humulus lupulus OX=3486 GN=BCAT2 PE=1 SV=1 && PF01063:Amino-transferase class IV"]
[10,22222912,22222993,82,7,0.140729927558387,0.681483442832231,-0.540753515273844,-38.4487582284701,"CHG","10:22222892:22224893","CGI_shore"]
[10,23109134,23109193,60,17,0.0360340169401994,0.141344725044608,-0.105310708104408,-89.8420133549965,"CHH","10:23107831:23109831","CGI_shore"]
[10,23109134,23109193,60,17,0.0360340169401994,0.141344725044608,-0.105310708104408,-89.8420133549965,"CHH","10:23108246:23110247","CGI_shore"]
[10,23167421,23167497,77,12,0.226244033638533,0.491519733194371,-0.265275699555838,-67.2542665670894,"CG","Os10g0580500","intron","Os10g0580500","Essential protein Yae1, N-terminal domain containing protein && - && -"]
[10,23167421,23167497,77,12,0.226244033638533,0.491519733194371,-0.265275699555838,-67.2542665670894,"CG","Os10g0580550","exon","Os10g0580550","Hypothetical protein && sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 && -"]
[10,23167421,23167497,77,12,0.226244033638533,0.491519733194371,-0.265275699555838,-67.2542665670894,"CG","Os10g0580550","utr3","Os10g0580550","Hypothetical protein && sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 && -"]
[10,23167421,23167497,77,12,0.226244033638533,0.491519733194371,-0.265275699555838,-67.2542665670894,"CG","10:23166954:23179375","CGI"]
[11,169045,169118,74,13,0.0585091921452297,0.175098483193795,-0.116589291048566,-52.0821332019506,"CHG","Os11g0104150","exon","Os11g0104150","Conserved hypothetical protein && - && -"]
[11,169045,169118,74,13,0.0585091921452297,0.175098483193795,-0.116589291048566,-52.0821332019506,"CHG","Os11g0104150","utr5","Os11g0104150","Conserved hypothetical protein && - && -"]
[11,169045,169118,74,13,0.0585091921452297,0.175098483193795,-0.116589291048566,-52.0821332019506,"CHG","11:168994:169433","CGI"]
[11,192973,193166,194,9,0.419068110620172,0.718197610800304,-0.299129500180131,-45.1810949652546,"CG","11:192370:194370","CGI_shore"]
[11,192973,193166,194,9,0.419068110620172,0.718197610800304,-0.299129500180131,-45.1810949652546,"CG","Os11g0104300","promoter","DWARF KYUSHU 3","Substrate of the SCF<sup>D3</sup> ubiquitination complex, Repressor of strigolactone (SL) signallin && sp|Q2RBP2|D53_ORYSJ Protein DWARF 53 OS=Oryza sativa subsp. japonica OX=39947 GN=D53 PE=1 SV=1 && -"]
[11,322356,322739,384,85,0.170739074087601,0.676167085119541,-0.50542801103194,-1009.98394909166,"CG","11:321866:323336","CGI"]
[11,322623,322708,86,7,0.158082582399809,0.440211084049093,-0.282128501649284,-39.444956021932,"CHG","11:321866:323336","CGI"]
[11,697982,698042,61,13,0.670298293414081,0.873581775549151,-0.20328348213507,-73.4647177989475,"CG","11:697004:698364","CGI"]
[11,1054412,1054559,148,69,0.195041098759161,0.348244321434401,-0.15320322267524,-389.691790945612,"CHH","11:1052588:1054588","CGI_shore"]
[11,1054412,1054559,148,69,0.195041098759161,0.348244321434401,-0.15320322267524,-389.691790945612,"CHH","11:1053492:1055493","CGI_shore"]
[11,1706309,1706470,162,47,0.223702671674979,0.456248062879069,-0.23254539120409,-291.958529600769,"CHH","11:1705266:1707267","CGI_shore"]
[11,1706309,1706470,162,47,0.223702671674979,0.456248062879069,-0.23254539120409,-291.958529600769,"CHH","Os11g0137000","promoter","PIN PROTEIN 1C","Similar to PIN1-like auxin transport protein && sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1B PE=2 SV=1 && PF03547:Membrane transport protein"]
[11,2148997,2149052,56,9,0.542227291192631,0.861919987697782,-0.319692696505151,-42.1854723823698,"CG","Os11g0147150","utr3","Os11g0147150","Hypothetical gene && - && -"]
[11,2148997,2149052,56,9,0.542227291192631,0.861919987697782,-0.319692696505151,-42.1854723823698,"CG","Os11g0147150","exon","Os11g0147150","Hypothetical gene && - && -"]
[11,2351303,2351557,255,40,0.0366642014626233,0.186047638759916,-0.149383437297293,-276.817908903947,"CG","ENSRNA049443084","promoter","tRNA-Ala","tRNA-Ala for anticodon AGC && - && -"]
[11,2351303,2351557,255,40,0.0366642014626233,0.186047638759916,-0.149383437297293,-276.817908903947,"CG","11:2351088:2352631","CGI"]
[11,2351303,2351557,255,40,0.0366642014626233,0.186047638759916,-0.149383437297293,-276.817908903947,"CG","Os11g0150632","utr5","Os11g0150632","Similar to H0101F08.9 protein && sp|Q75L84|GT43A_ORYSJ Probable beta-1,4-xylosyltransferase GT43A OS=Oryza sativa subsp. japonica OX=39947 GN=GT43A PE=2 SV=1 && -"]
[11,2351303,2351557,255,40,0.0366642014626233,0.186047638759916,-0.149383437297293,-276.817908903947,"CG","Os11g0150632","exon","Os11g0150632","Similar to H0101F08.9 protein && sp|Q75L84|GT43A_ORYSJ Probable beta-1,4-xylosyltransferase GT43A OS=Oryza sativa subsp. japonica OX=39947 GN=GT43A PE=2 SV=1 && -"]
[11,2359682,2359756,75,24,0.0220932424577983,0.116176337541028,-0.0940830950832295,-133.606362350558,"CHH","Os11g0150700","intron","Os11g0150700","Serine/threonine protein kinase domain containing protein && sp|Q9LTW5|AGC15_ARATH Serine/threonine-protein kinase AGC1-5 OS=Arabidopsis thaliana OX=3702 GN=AGC1-5 PE=1 SV=1 && PF00069:Protein kinase domain"]
[11,2359682,2359756,75,24,0.0220932424577983,0.116176337541028,-0.0940830950832295,-133.606362350558,"CHH","11:2357948:2359948","CGI_shore"]
[11,2477531,2477719,189,33,0.0820622475287791,0.244711979578991,-0.162649732050212,-166.879033151653,"CHH","11:2476185:2478186","CGI_shore"]
[11,2477531,2477719,189,33,0.0820622475287791,0.244711979578991,-0.162649732050212,-166.879033151653,"CHH","Os11g0153000","promoter","Os11g0153000","Conserved hypothetical protein && - && -"]
[11,2526274,2526421,148,43,0.0121691401429931,0.109475255837976,-0.097306115694983,-189.436704565322,"CHH","Os11g0153800","intron","Os11g0153800","Similar to Ribosomal protein S25 (40S ribosomal 25S subunit) && sp|P46301|RS25_SOLLC 40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1 && PF03297:S25 ribosomal protein"]
[11,2787222,2787351,130,37,0.0696719202074396,0.287053803414574,-0.217381883207134,-201.88296513765,"CHH","Os11g0157600","promoter","PSEUDO-RESPONSE REGULATOR 59","Circadian-associated rice pseudo response regulator, Control of flowering tim && sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica OX=39947 GN=PRR95 PE=2 SV=1 && PF00072:Response regulator receiver domain|PF06203:CCT motif"]
[11,2787222,2787351,130,37,0.0696719202074396,0.287053803414574,-0.217381883207134,-201.88296513765,"CHH","11:2787013:2789013","CGI_shore"]
[11,2852829,2852961,133,14,0.237935168608561,0.488167249615135,-0.250232081006574,-67.0745418750368,"CG","11:2851027:2853028","CGI_shore"]
[11,2852829,2852961,133,14,0.237935168608561,0.488167249615135,-0.250232081006574,-67.0745418750368,"CG","11:2851701:2853701","CGI_shore"]
[11,2977840,2977940,101,16,0.173942013391615,0.446035458284947,-0.272093444893332,-74.7647493727305,"CHG","Os11g0161100","promoter","Os11g0161100","NB-ARC domain containing protein && - && -"]
[11,2977840,2977940,101,16,0.173942013391615,0.446035458284947,-0.272093444893332,-74.7647493727305,"CHG","11:2977472:2978728","CGI"]
[11,3104512,3104703,192,48,0.0289695416318137,0.345693770768383,-0.316724229136569,-392.965851312333,"CHH","11:3103268:3105268","CGI_shore"]
[11,3151322,3151413,92,15,0.800653810286851,0.851819090294413,-0.0511652800075616,-47.8138683316847,"CG","11:3150790:3152074","CGI"]
[11,3151322,3151413,92,15,0.800653810286851,0.851819090294413,-0.0511652800075616,-47.8138683316847,"CG","11:3151290:3153290","CGI_shore"]
[11,3214257,3214307,51,9,0.398577824535603,0.547482320476486,-0.148904495940883,-39.2244148540004,"CG","11:3213280:3215280","CGI_shore"]
[11,3734797,3735117,321,86,0.237475438418732,0.496605994624331,-0.2591305562056,-539.402873265143,"CG","11:3732846:3734847","CGI_shore"]
[11,3734797,3735117,321,86,0.237475438418732,0.496605994624331,-0.2591305562056,-539.402873265143,"CG","11:3733740:3739230","CGI"]
[11,3978180,3978235,56,11,0.260790750009797,0.545558618502307,-0.284767868492511,-51.5471385478788,"CHG","11:3976409:3978410","CGI_shore"]
[11,3978180,3978235,56,11,0.260790750009797,0.545558618502307,-0.284767868492511,-51.5471385478788,"CHG","11:3977506:3979507","CGI_shore"]
[11,4186629,4186814,186,40,0.0701123921225988,0.23082593270568,-0.160713540583081,-248.95513464968,"CHH","Os11g0183150","intron","Os11g0183150","Ankyrin repeat domain containing protein && sp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN1 OS=Arabidopsis thaliana OX=3702 GN=ITN1 PE=1 SV=1 && PF13962:Domain of unknown function|PF12796:Ankyrin repeats (3 copies)"]
[11,4208214,4208381,168,54,0.62934264353907,0.856838690247928,-0.227496046708858,-304.611347430873,"CG","11:4207709:4214358","CGI"]
[11,4208256,4208362,107,36,0.0784127022832338,0.230085168298498,-0.151672466015264,-209.810881673163,"CHH","11:4207709:4214358","CGI"]
[11,4233090,4233168,79,9,0.430798777651123,0.686931776770577,-0.256132999119454,-42.1705789689012,"CG","11:4231496:4233496","CGI_shore"]
[11,4233090,4233168,79,9,0.430798777651123,0.686931776770577,-0.256132999119454,-42.1705789689012,"CG","11:4232155:4234156","CGI_shore"]
[11,4303622,4304035,414,48,0.411421925183403,0.801679074942019,-0.390257149758615,-538.677203199622,"CG","Os11g0184900","promoter","NAC DOMAIN-CONTAINING PROTEIN 5","Similar to OsNAC5 protein [imported]-rice && sp|Q53NF7|NAC71_ORYSJ NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC071 PE=1 SV=1 && PF02365:No apical meristem (NAM) protein"]
[11,4303622,4304035,414,48,0.411421925183403,0.801679074942019,-0.390257149758615,-538.677203199622,"CG","11:4303551:4305552","CGI_shore"]
[11,4423285,4423385,101,6,0.278872549292278,0.722297777441491,-0.443425228149214,-34.9034569294726,"CG","11:4423104:4425105","CGI_shore"]
[11,4458281,4458409,129,22,0.581077177607336,0.804310933054052,-0.223233755446716,-107.925229502092,"CG","11:4457215:4459215","CGI_shore"]
[11,4458281,4458409,129,22,0.581077177607336,0.804310933054052,-0.223233755446716,-107.925229502092,"CG","11:4458071:4458496","CGI"]
[11,4760472,4760572,101,15,0.0487149231023271,0.189982726019104,-0.141267802916777,-91.6610097635438,"CHH","Os11g0195000","intron","Os11g0195000","Similar to J033060E19, full insert sequence && sp|Q6Z9C8|HFB2B_ORYSJ Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFB2B PE=2 SV=1 && -"]
[11,4760472,4760572,101,15,0.0487149231023271,0.189982726019104,-0.141267802916777,-91.6610097635438,"CHH","11:4758788:4760788","CGI_shore"]
[11,4760472,4760572,101,15,0.0487149231023271,0.189982726019104,-0.141267802916777,-91.6610097635438,"CHH","Os11g0195100","promoter","Os11g0195100","Similar to Protein translocase subunit secA && sp|D8WUA4|SECA2_ARATH Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1 && PF01043:SecA preprotein cross-linking domain|PF07517:SecA DEAD-like domain|PF07516:SecA Wing and Scaffold domain"]
[11,4926061,4926132,72,18,0.0126839944421763,0.123831085550679,-0.111147091108503,-86.3916831518274,"CHH","11:4925241:4927242","CGI_shore"]
[11,4926061,4926132,72,18,0.0126839944421763,0.123831085550679,-0.111147091108503,-86.3916831518274,"CHH","Os11g0198200","promoter","Os11g0198200","Conserved hypothetical protein && - && -"]
[11,4999711,4999787,77,12,0.37329728275932,0.684658886296632,-0.311361603537313,-53.3002510003128,"CHG","Os11g0199700","intron","Os11g0199700","Similar to VHS and GAT domain protein && sp|Q9LPL6|TOL3_ARATH TOM1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOL3 PE=1 SV=1 && -"]
[11,4999711,4999787,77,12,0.37329728275932,0.684658886296632,-0.311361603537313,-53.3002510003128,"CHG","11:4998477:5003119","CGI"]
[11,5636284,5636338,55,23,0.0381086424378198,0.116579269617475,-0.0784706271796551,-97.9373986819822,"CHH","11:5636223:5638224","CGI_shore"]
[11,5636284,5636338,55,23,0.0381086424378198,0.116579269617475,-0.0784706271796551,-97.9373986819822,"CHH","Os11g0209502","promoter","Os11g0209502","F-box domain, cyclin-like domain containing protein && sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana OX=3702 GN=FBL13 PE=2 SV=1 && -"]
[11,5884392,5884505,114,19,0.031659196825072,0.22576627826084,-0.194107081435768,-101.677791007476,"CHH","11:5884173:5884674","CGI"]
[11,5919953,5920149,197,29,0.0151462162338561,0.167860410194675,-0.152714193960819,-130.953913381788,"CHH","Os11g0213800","promoter","Os11g0213800","Similar to NBS-LRR disease resistance protein homologue (Fragment) && sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=RGA4 PE=2 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[11,5919953,5920149,197,29,0.0151462162338561,0.167860410194675,-0.152714193960819,-130.953913381788,"CHH","11:5919140:5921141","CGI_shore"]
[11,5952574,5952739,166,47,0.198418934565186,0.452802131420495,-0.254383196855309,-284.195546848932,"CG","11:5947376:5952951","CGI"]
[11,6107506,6107572,67,20,0.0147518384359188,0.125122505080223,-0.110370666644304,-110.359563154945,"CHH","11:6105739:6107739","CGI_shore"]
[11,6107506,6107572,67,20,0.0147518384359188,0.125122505080223,-0.110370666644304,-110.359563154945,"CHH","11:6106959:6108959","CGI_shore"]
[11,6150363,6150658,296,71,0.13684482242836,0.305164094439487,-0.168319272011128,-510.051489449965,"CG","Os11g0218100","promoter","Os11g0218100","Similar to RNApol24 && - && PF13656:RNA polymerase Rpb3/Rpb11 dimerisation domain"]
[11,6150363,6150658,296,71,0.13684482242836,0.305164094439487,-0.168319272011128,-510.051489449965,"CG","11:6148458:6150459","CGI_shore"]
[11,6150363,6150658,296,71,0.13684482242836,0.305164094439487,-0.168319272011128,-510.051489449965,"CG","11:6149415:6150658","CGI"]
[11,6150511,6150604,94,31,0.0223729179658838,0.0902725622192511,-0.0678996442533673,-147.598481957337,"CHH","11:6149415:6150658","CGI"]
[11,6377725,6377810,86,21,0.666098130187991,0.839932645477673,-0.173834515289682,-95.805809677128,"CG","11:6376169:6378170","CGI_shore"]
[11,6377725,6377810,86,21,0.666098130187991,0.839932645477673,-0.173834515289682,-95.805809677128,"CG","11:6377074:6379047","CGI"]
[11,6395727,6396126,400,133,0.585287612768225,0.73666153574945,-0.151373922981226,-888.583573632675,"CG","Os11g0222200","promoter","non-inhibitory serpin-Z9","Protease inhibitor I4, serpin, plant domain containing protein && sp|Q2R8P2|SPZ9_ORYSJ Probable non-inhibitory serpin-Z9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0222200 PE=2 SV=2 && PF00079:Serpin (serine protease inhibitor)"]
[11,6395727,6396126,400,133,0.585287612768225,0.73666153574945,-0.151373922981226,-888.583573632675,"CG","11:6394203:6409063","CGI"]
[11,6588403,6588479,77,7,0.282582951422297,0.753832426166958,-0.471249474744661,-36.9544753593125,"CHG","11:6586544:6588544","CGI_shore"]
[11,6705368,6705515,148,50,0.0138837505510938,0.0621651375999052,-0.0482813870488114,-256.470154464983,"CHH","Os11g0227800","intron","Os11g0227800","NB-ARC domain containing protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[11,7363689,7363779,91,16,0.0295072679274183,0.312510970274253,-0.283003702346835,-73.2491786367203,"CHH","Os11g0238000","promoter","Os11g0238000","Similar to NB-ARC domain containing protein && sp|F7J0N2|RGA5R_ORYSJ Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[11,7932957,7933100,144,19,0.381421153773475,0.604614605854115,-0.22319345208064,-104.396616163537,"CG","Os11g0246900","promoter","Os11g0246900","Ankyrin repeat containing protein && sp|Q9M1Y3|SKI35_ARATH Ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana OX=3702 GN=SKIP35 PE=1 SV=1 && -"]
[11,7932957,7933100,144,19,0.381421153773475,0.604614605854115,-0.22319345208064,-104.396616163537,"CG","11:7932875:7934876","CGI_shore"]
[11,7932957,7933100,144,19,0.381421153773475,0.604614605854115,-0.22319345208064,-104.396616163537,"CG","Os11g0246900","exon","Os11g0246900","Ankyrin repeat containing protein && sp|Q9M1Y3|SKI35_ARATH Ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana OX=3702 GN=SKIP35 PE=1 SV=1 && -"]
[11,8019080,8019142,63,14,0.638889429703941,0.839424929990937,-0.200535500286996,-69.570681848263,"CG","11:8017727:8019728","CGI_shore"]
[11,8019080,8019142,63,14,0.638889429703941,0.839424929990937,-0.200535500286996,-69.570681848263,"CG","Os11g0248200","exon","Os11g0248200","Nucleotide-binding, alpha-beta plait domain containing protein && sp|O80567|LRP6B_ARATH La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2 && PF05383:La domain"]
[11,8019080,8019142,63,14,0.638889429703941,0.839424929990937,-0.200535500286996,-69.570681848263,"CG","Os11g0248466","exon","Os11g0248466","Hypothetical protein && sp|O80567|LRP6B_ARATH La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2 && -"]
[11,8019782,8019871,90,7,0.698883665888555,0.85485647165795,-0.155972805769395,-30.2610850263314,"CG","Os11g0248200","intron","Os11g0248200","Nucleotide-binding, alpha-beta plait domain containing protein && sp|O80567|LRP6B_ARATH La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2 && PF05383:La domain"]
[11,8019782,8019871,90,7,0.698883665888555,0.85485647165795,-0.155972805769395,-30.2610850263314,"CG","Os11g0248466","intron","Os11g0248466","Hypothetical protein && sp|O80567|LRP6B_ARATH La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2 && -"]
[11,8313525,8313619,95,8,0.367465414754134,0.795716532185669,-0.428251117431535,-40.6134456241095,"CHG","11:8312034:8314034","CGI_shore"]
[11,8313525,8313619,95,8,0.367465414754134,0.795716532185669,-0.428251117431535,-40.6134456241095,"CHG","11:8312184:8314185","CGI_shore"]
[11,8323057,8323235,179,40,0.0171392496963333,0.171742322190621,-0.154603072494288,-228.950810709098,"CHH","11:8321235:8323236","CGI_shore"]
[11,8323057,8323235,179,40,0.0171392496963333,0.171742322190621,-0.154603072494288,-228.950810709098,"CHH","11:8322927:8324928","CGI_shore"]
[11,8361815,8361896,82,13,0.439022067206059,0.786346985205985,-0.347324917999926,-70.6013106026183,"CG","11:8357960:8367860","CGI"]
[11,8361836,8361888,53,7,0.227302320641967,0.558310084340771,-0.331007763698804,-31.899721816674,"CHG","11:8357960:8367860","CGI"]
[11,8713990,8714040,51,5,0.0816357533278818,0.267580045104067,-0.185944291776185,-19.106575229139,"CG","11:8712868:8714868","CGI_shore"]
[11,9135785,9135841,57,10,0.109700451733845,0.448586314952937,-0.338885863219092,-46.4741527690481,"CG","11:9135440:9135965","CGI"]
[11,9163919,9164019,101,22,0.0158136316117962,0.0912772209784926,-0.07546358936669639,-134.328325947197,"CHH","Os11g0266800","intron","Os11g0266800","Tetratricopeptide-like helical domain containing protein && sp|Q9Y5Q9|TF3C3_HUMAN General transcription factor 3C polypeptide 3 OS=Homo sapiens OX=9606 GN=GTF3C3 PE=1 SV=1 && -"]
[11,9646064,9646178,115,38,0.06497897308326,0.2076765630537,-0.14269758997044,-198.250034478927,"CHH","11:9645441:9646416","CGI"]
[11,9761906,9761958,53,23,0.0260767232093377,0.121008588133082,-0.0949318649237439,-111.128683068646,"CHH","11:9760685:9762686","CGI_shore"]
[11,9761906,9761958,53,23,0.0260767232093377,0.121008588133082,-0.0949318649237439,-111.128683068646,"CHH","11:9760966:9762966","CGI_shore"]
[11,9765768,9765841,74,15,0.257460988814232,0.521729323972385,-0.264268335158153,-61.9916827889075,"CHG","11:9765179:9767179","CGI_shore"]
[11,9765768,9765841,74,15,0.257460988814232,0.521729323972385,-0.264268335158153,-61.9916827889075,"CHG","11:9765195:9766235","CGI"]
[11,9765772,9765852,81,25,0.475362890399066,0.770065838616618,-0.294702948217552,-129.224700762599,"CG","11:9765179:9767179","CGI_shore"]
[11,9765772,9765852,81,25,0.475362890399066,0.770065838616618,-0.294702948217552,-129.224700762599,"CG","11:9765195:9766235","CGI"]
[11,10016625,10016746,122,9,0.253742078037333,0.812724896879194,-0.558982818841861,-54.367584746614,"CHG","11:10015813:10017814","CGI_shore"]
[11,10016625,10016746,122,9,0.253742078037333,0.812724896879194,-0.558982818841861,-54.367584746614,"CHG","11:10015982:10017982","CGI_shore"]
[11,10281386,10281441,56,23,0.0310627341489774,0.155514850520446,-0.124452116371469,-113.768331769602,"CHH","11:10280474:10282475","CGI_shore"]
[11,10687876,10687929,54,5,0.372105855295313,0.588065751349425,-0.215959896054111,-19.7351894770337,"CHG","11:10686311:10688311","CGI_shore"]
[11,10932087,10932244,158,67,0.0516428172918609,0.183216457570636,-0.131573640278776,-333.968374169192,"CHH","11:10931211:10933211","CGI_shore"]
[11,10932087,10932244,158,67,0.0516428172918609,0.183216457570636,-0.131573640278776,-333.968374169192,"CHH","11:10931509:10933510","CGI_shore"]
[11,11338285,11338364,80,23,0.154691476395725,0.374114936311589,-0.219423459915864,-123.050282475726,"CG","11:11337338:11338546","CGI"]
[11,11384272,11384354,83,9,0.297305945614043,0.541852965841044,-0.244547020227002,-37.7563888732828,"CHG","11:11383966:11385967","CGI_shore"]
[11,11519716,11519772,57,9,0.38362255908744,0.792761832200504,-0.409139273113063,-38.5639057071896,"CG","11:11518329:11520329","CGI_shore"]
[11,11908010,11908226,217,59,0.301085470288966,0.756758846150248,-0.455673375861282,-514.410471682142,"CG","11:11904600:11909147","CGI"]
[11,11908010,11908226,217,59,0.301085470288966,0.756758846150248,-0.455673375861282,-514.410471682142,"CG","Os11g0310800","promoter","Os11g0310800","DEAD-like helicase, N-terminal domain containing protein && sp|Q93Y16|DEAH4_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana OX=3702 GN=At1g27900 PE=1 SV=1 && PF04408:Helicase associated domain (HA2)|PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain|PF07717:Oligonucleotide/oligosaccharide-binding (OB)-fold"]
[11,11908036,11908155,120,12,0.275501009328049,0.618466707924828,-0.342965698596779,-64.4645374423017,"CHG","11:11904600:11909147","CGI"]
[11,11908036,11908155,120,12,0.275501009328049,0.618466707924828,-0.342965698596779,-64.4645374423017,"CHG","Os11g0310800","promoter","Os11g0310800","DEAD-like helicase, N-terminal domain containing protein && sp|Q93Y16|DEAH4_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana OX=3702 GN=At1g27900 PE=1 SV=1 && PF04408:Helicase associated domain (HA2)|PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain|PF07717:Oligonucleotide/oligosaccharide-binding (OB)-fold"]
[11,12583741,12583846,106,22,0.184774968295221,0.41430336776014,-0.229528399464919,-115.639063473527,"CG","11:12582240:12587667","CGI"]
[11,12819260,12819455,196,32,0.249946139041203,0.627946591967612,-0.378000452926409,-175.089535240694,"CHG","11:12817774:12821160","CGI"]
[11,12819260,12819455,196,32,0.249946139041203,0.627946591967612,-0.378000452926409,-175.089535240694,"CHG","Os11g0416900","promoter","ABC TRANSPORTER G FAMILY MEMBER 28","ABC transporter-like domain containing protein && sp|Q9FF46|AB28G_ARATH ABC transporter G family member 28 OS=Arabidopsis thaliana OX=3702 GN=ABCG28 PE=3 SV=1 && PF00005:ABC transporter"]
[11,13116856,13116936,81,4,0.133640891634678,0.367505298173924,-0.233864406539246,-28.3327473818607,"CG","11:13116612:13117360","CGI"]
[11,13135888,13135944,57,10,0.208329589843634,0.567837664532969,-0.359508074689336,-42.976022456502,"CHG","11:13134775:13136776","CGI_shore"]
[11,13135888,13135944,57,10,0.208329589843634,0.567837664532969,-0.359508074689336,-42.976022456502,"CHG","11:13135868:13136524","CGI"]
[11,13199745,13199848,104,27,0.0555552311366618,0.170220843068846,-0.114665611932185,-134.341663679938,"CHH","11:13199399:13201399","CGI_shore"]
[11,13199745,13199848,104,27,0.0555552311366618,0.170220843068846,-0.114665611932185,-134.341663679938,"CHH","11:13199478:13201479","CGI_shore"]
[11,13781537,13781612,76,18,0.0177393503695789,0.124539192799213,-0.106799842429634,-100.824455682128,"CHH","11:13779644:13781645","CGI_shore"]
[11,13781537,13781612,76,18,0.0177393503695789,0.124539192799213,-0.106799842429634,-100.824455682128,"CHH","11:13779956:13781956","CGI_shore"]
[11,13781537,13781612,76,18,0.0177393503695789,0.124539192799213,-0.106799842429634,-100.824455682128,"CHH","Os11g0430000","intron","SERINE CARBOXYPEPTIDASE 49","Similar to serine carboxypeptidase 1 && sp|Q9C7Z9|SCP18_ARATH Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana OX=3702 GN=SCPL18 PE=2 SV=2 && PF00450:Serine carboxypeptidase"]
[11,14136775,14136912,138,39,0.291770490549177,0.472560104761244,-0.180789614212068,-178.513662344034,"CG","11:14135453:14137454","CGI_shore"]
[11,14136775,14136912,138,39,0.291770490549177,0.472560104761244,-0.180789614212068,-178.513662344034,"CG","Os11g0435500","exon","Os11g0435500","Similar to alkaline alpha galactosidase 3 && sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 && -"]
[11,14136775,14136912,138,39,0.291770490549177,0.472560104761244,-0.180789614212068,-178.513662344034,"CG","11:14136526:14137436","CGI"]
[11,14136775,14136912,138,39,0.291770490549177,0.472560104761244,-0.180789614212068,-178.513662344034,"CG","Os11g0435500","utr5","Os11g0435500","Similar to alkaline alpha galactosidase 3 && sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 && -"]
[11,14136775,14136912,138,39,0.291770490549177,0.472560104761244,-0.180789614212068,-178.513662344034,"CG","Os11g0435500","TSS","Os11g0435500","Similar to alkaline alpha galactosidase 3 && sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 && -"]
[11,14136775,14136912,138,39,0.291770490549177,0.472560104761244,-0.180789614212068,-178.513662344034,"CG","Os11g0435500","promoter","Os11g0435500","Similar to alkaline alpha galactosidase 3 && sp|Q84VX0|RFS1_ARATH Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RFS1 PE=2 SV=1 && -"]
[11,14576656,14576862,207,32,0.0128510451042991,0.189525731707143,-0.176674686602843,-195.243369394626,"CHH","11:14575518:14577519","CGI_shore"]
[11,14778947,14779074,128,31,0.084531889848351,0.192079333280682,-0.107547443432331,-134.160896062551,"CG","11:14778946:14779637","CGI"]
[11,14865567,14865737,171,12,0.371270138715733,0.827189713393153,-0.45591957467742,-75.2371195719602,"CHG","11:14863590:14865590","CGI_shore"]
[11,14865567,14865737,171,12,0.371270138715733,0.827189713393153,-0.45591957467742,-75.2371195719602,"CHG","11:14865591:14865894","CGI"]
[11,14935567,14935683,117,50,0.0194168216497441,0.07219209926887,-0.052775277619126,-256.806320997802,"CHH","11:14934839:14936839","CGI_shore"]
[11,14935567,14935683,117,50,0.0194168216497441,0.07219209926887,-0.052775277619126,-256.806320997802,"CHH","11:14935139:14937140","CGI_shore"]
[11,15413555,15413638,84,5,0.284688332687615,0.516796767567512,-0.232108434879897,-22.4014339690334,"CHG","Os11g0454800","promoter","Os11g0454800","Similar to ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein && sp|Q56Y74|MORC6_ARATH Protein MICRORCHIDIA 6 OS=Arabidopsis thaliana OX=3702 GN=MORC6 PE=1 SV=1 && -"]
[11,15413555,15413638,84,5,0.284688332687615,0.516796767567512,-0.232108434879897,-22.4014339690334,"CHG","11:15412297:15414297","CGI_shore"]
[11,15413555,15413638,84,5,0.284688332687615,0.516796767567512,-0.232108434879897,-22.4014339690334,"CHG","11:15413126:15413570","CGI"]
[11,15413555,15413638,84,5,0.284688332687615,0.516796767567512,-0.232108434879897,-22.4014339690334,"CHG","11:15413570:15415571","CGI_shore"]
[11,15595806,15595908,103,33,0.0307840772608295,0.0710127665227673,-0.0402286892619378,-144.394769416027,"CHH","11:15579267:15601197","CGI"]
[11,15708860,15708910,51,9,0.713175111805164,0.890358463154837,-0.177183351349673,-45.5424399719987,"CG","11:15707462:15709463","CGI_shore"]
[11,15708860,15708910,51,9,0.713175111805164,0.890358463154837,-0.177183351349673,-45.5424399719987,"CG","11:15707911:15709911","CGI_shore"]
[11,15708860,15708910,51,9,0.713175111805164,0.890358463154837,-0.177183351349673,-45.5424399719987,"CG","11:15708567:15709027","CGI"]
[11,15708860,15708910,51,9,0.713175111805164,0.890358463154837,-0.177183351349673,-45.5424399719987,"CG","Os11g0461000","intron","SERINE CARBOXYPEPTIDASE 61","Peptidase S10, serine carboxypeptidase family protein && sp|Q8H780|SCP13_ARATH Serine carboxypeptidase-like 13 OS=Arabidopsis thaliana OX=3702 GN=SCPL13 PE=2 SV=2 && PF00450:Serine carboxypeptidase"]
[11,15943282,15943476,195,19,0.131884545852367,0.576005265542478,-0.444120719690111,-118.859624503744,"CHG","11:15942867:15952469","CGI"]
[11,16340242,16340326,85,12,0.330470251735474,0.571394953651747,-0.240924701916274,-50.9681254294053,"CHG","11:16338650:16340651","CGI_shore"]
[11,16340242,16340326,85,12,0.330470251735474,0.571394953651747,-0.240924701916274,-50.9681254294053,"CHG","11:16340202:16342134","CGI"]
[11,16341292,16341465,174,71,0.052535722746894,0.122158010528336,-0.069622287781442,-353.399944864477,"CG","11:16340202:16342134","CGI"]
[11,16341292,16341465,174,71,0.052535722746894,0.122158010528336,-0.069622287781442,-353.399944864477,"CG","11:16341260:16343260","CGI_shore"]
[11,16342215,16342308,94,7,0.166781065023389,0.759155572565999,-0.59237450754261,-46.8727947878252,"CG","11:16341260:16343260","CGI_shore"]
[11,16342215,16342308,94,7,0.166781065023389,0.759155572565999,-0.59237450754261,-46.8727947878252,"CG","11:16342134:16344135","CGI_shore"]
[11,16520827,16520912,86,29,0.0338924263742264,0.10665235068438,-0.0727599243101534,-139.909206727395,"CHH","11:16519726:16521727","CGI_shore"]
[11,16815421,16815499,79,15,0.690367696747869,0.865643364855878,-0.175275668108009,-54.8813136765166,"CG","11:16814544:16816544","CGI_shore"]
[11,16815421,16815499,79,15,0.690367696747869,0.865643364855878,-0.175275668108009,-54.8813136765166,"CG","11:16814791:16816792","CGI_shore"]
[11,16815421,16815499,79,15,0.690367696747869,0.865643364855878,-0.175275668108009,-54.8813136765166,"CG","11:16814873:16815840","CGI"]
[11,16815421,16815499,79,15,0.690367696747869,0.865643364855878,-0.175275668108009,-54.8813136765166,"CG","Os11g0480000","intron","Os11g0480000","NB-ARC domain containing protein && sp|P0DO07|PIK2_ORYSJ Disease resistance protein Pik-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-2 PE=3 SV=1 && PF00931:NB-ARC domain"]
[11,16823073,16823208,136,42,0.0103008493468602,0.170882207529527,-0.160581358182666,-241.021109949504,"CHH","11:16821815:16823816","CGI_shore"]
[11,16823073,16823208,136,42,0.0103008493468602,0.170882207529527,-0.160581358182666,-241.021109949504,"CHH","Os11g0480000","intron","Os11g0480000","NB-ARC domain containing protein && sp|P0DO07|PIK2_ORYSJ Disease resistance protein Pik-2 OS=Oryza sativa subsp. japonica OX=39947 GN=PIK-2 PE=3 SV=1 && PF00931:NB-ARC domain"]
[11,16823073,16823208,136,42,0.0103008493468602,0.170882207529527,-0.160581358182666,-241.021109949504,"CHH","11:16822930:16828742","CGI"]
[11,16829919,16829986,68,10,0.0228097106258884,0.143101502567681,-0.120291791941792,-79.9449746949912,"CHH","11:16828742:16830743","CGI_shore"]
[11,16889239,16889380,142,33,0.625806096803177,0.883521815483147,-0.25771571867997,-144.965296505717,"CG","Os11g0481500","exon","Os11g0481500","Conserved hypothetical protein && - && -"]
[11,16889239,16889380,142,33,0.625806096803177,0.883521815483147,-0.25771571867997,-144.965296505717,"CG","11:16889238:16889591","CGI"]
[11,17258205,17258259,55,16,0.135642340689801,0.421908987033955,-0.286266646344155,-88.9928410652897,"CG","11:17256771:17258772","CGI_shore"]
[11,17258205,17258259,55,16,0.135642340689801,0.421908987033955,-0.286266646344155,-88.9928410652897,"CG","11:17257678:17259678","CGI_shore"]
[11,17258205,17258259,55,16,0.135642340689801,0.421908987033955,-0.286266646344155,-88.9928410652897,"CG","11:17258204:17258422","CGI"]
[11,17459903,17459968,66,10,0.420029843468023,0.666452763569862,-0.246422920101839,-39.7719730364477,"CHG","11:17458909:17460909","CGI_shore"]
[11,17543389,17543544,156,17,0.900003020873222,0.92884538891176,-0.028842368038538,-63.9203417743406,"CG","11:17537159:17549088","CGI"]
[11,17842303,17842382,80,11,0.303552206953634,0.547633468168902,-0.244081261215268,-42.5487135940555,"CHG","11:17842369:17844370","CGI_shore"]
[11,17842303,17842382,80,11,0.303552206953634,0.547633468168902,-0.244081261215268,-42.5487135940555,"CHG","11:17840695:17842369","CGI"]
[11,18407066,18407131,66,20,0.0151381625730766,0.112039844087061,-0.0969016815139848,-96.6809906994555,"CHH","11:18405661:18407661","CGI_shore"]
[11,18560219,18560327,109,33,4.79195467415183E-3,0.0504571499283469,-0.0456651952541951,-128.912289470036,"CHH","11:18560188:18562189","CGI_shore"]
[11,18560219,18560327,109,33,4.79195467415183E-3,0.0504571499283469,-0.0456651952541951,-128.912289470036,"CHH","Os11g0517800","intron","Os11g0517800","Conserved hypothetical protein && sp|Q0WP44|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana OX=3702 GN=HST1 PE=1 SV=1 && -"]
[11,18560219,18560327,109,33,4.79195467415183E-3,0.0504571499283469,-0.0456651952541951,-128.912289470036,"CHH","Os11g0517800","exon","Os11g0517800","Conserved hypothetical protein && sp|Q0WP44|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana OX=3702 GN=HST1 PE=1 SV=1 && -"]
[11,18875154,18875309,156,39,0.102199829660414,0.236835727288641,-0.134635897628227,-185.348155944008,"CHH","Os11g0523110","intron","Os11g0523110","Similar to Alcohol dehydrogenase-like protein && sp|P50160|TS2_MAIZE Sex determination protein tasselseed-2 OS=Zea mays OX=4577 GN=TS2 PE=2 SV=1 && PF13561:Enoyl-(Acyl carrier protein) reductase"]
[11,18875154,18875309,156,39,0.102199829660414,0.236835727288641,-0.134635897628227,-185.348155944008,"CHH","11:18873964:18875964","CGI_shore"]
[11,18905726,18905810,85,15,0.0509546587493353,0.151430208990345,-0.10047555024101,-86.0966724739338,"CHH","11:18904511:18906512","CGI_shore"]
[11,18905726,18905810,85,15,0.0509546587493353,0.151430208990345,-0.10047555024101,-86.0966724739338,"CHH","Os11g0523500","promoter","Os11g0523500","Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein && sp|Q84J75|PG2B1_ARATH Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1 && -"]
[11,19080776,19080875,100,17,0.176262145236366,0.408678348081772,-0.232416202845406,-82.2995101278075,"CHG","Os11g0525800","promoter","Os11g0525800","Similar to retrotransposon protein && sp|O80438|MAK3_ARATH N-alpha-acetyltransferase MAK3 OS=Arabidopsis thaliana OX=3702 GN=MAK3 PE=1 SV=1 && -"]
[11,19080776,19080875,100,17,0.176262145236366,0.408678348081772,-0.232416202845406,-82.2995101278075,"CHG","11:19079318:19081319","CGI_shore"]
[11,19080776,19080875,100,17,0.176262145236366,0.408678348081772,-0.232416202845406,-82.2995101278075,"CHG","11:19079738:19081738","CGI_shore"]
[11,19080776,19080875,100,17,0.176262145236366,0.408678348081772,-0.232416202845406,-82.2995101278075,"CHG","11:19080595:19080936","CGI"]
[11,19112597,19112647,51,7,0.144664981730381,0.308650613985973,-0.163985632255592,-26.6005391982599,"CG","11:19111045:19113046","CGI_shore"]
[11,19112597,19112647,51,7,0.144664981730381,0.308650613985973,-0.163985632255592,-26.6005391982599,"CG","11:19112528:19114529","CGI_shore"]
[11,19247946,19248066,121,35,0.534361595798531,0.861286044196549,-0.326924448398018,-161.617584490826,"CG","11:19247005:19249005","CGI_shore"]
[11,19247946,19248066,121,35,0.534361595798531,0.861286044196549,-0.326924448398018,-161.617584490826,"CG","11:19247477:19248067","CGI"]
[11,19305752,19305836,85,9,0.136998946606448,0.622451238787289,-0.48545229218084,-50.7967593616997,"CHG","11:19305628:19305868","CGI"]
[11,19398467,19398572,106,35,0.115884408064382,0.374964364098013,-0.25907995603363,-165.302950533223,"CHH","11:19396723:19398723","CGI_shore"]
[11,19764454,19764510,57,17,0.230116466234674,0.418172159240921,-0.188055693006247,-67.7193363863866,"CG","11:19763564:19764543","CGI"]
[11,19917879,19917953,75,17,0.0505707750097592,0.139675333192845,-0.0891045581830862,-93.3030885351973,"CHH","11:19915989:19917990","CGI_shore"]
[11,19917879,19917953,75,17,0.0505707750097592,0.139675333192845,-0.0891045581830862,-93.3030885351973,"CHH","11:19916949:19918950","CGI_shore"]
[11,19917879,19917953,75,17,0.0505707750097592,0.139675333192845,-0.0891045581830862,-93.3030885351973,"CHH","11:19917001:19919001","CGI_shore"]
[11,20060694,20060756,63,13,0.626098716163123,0.845933196455503,-0.21983448029238,-57.8731674804151,"CG","11:20048718:20062584","CGI"]
[11,20197945,20198022,78,29,0.0728396443798477,0.162870109476397,-0.0900304650965492,-150.814658373402,"CHH","11:20152421:20255292","CGI"]
[11,21008728,21008812,85,11,0.682895851317264,0.890921792713687,-0.208025941396423,-43.3223829346965,"CG","11:21007015:21009015","CGI_shore"]
[11,21008728,21008812,85,11,0.682895851317264,0.890921792713687,-0.208025941396423,-43.3223829346965,"CG","11:21007499:21009500","CGI_shore"]
[11,21015129,21015185,57,5,0.630066725764758,0.754824731058895,-0.124758005294137,-20.4317568686224,"CHG","11:21014193:21016193","CGI_shore"]
[11,21064230,21064379,150,21,0.0112977945579842,0.244588659295984,-0.233290864738,-127.398027895218,"CHH","11:21063286:21065287","CGI_shore"]
[11,21064230,21064379,150,21,0.0112977945579842,0.244588659295984,-0.233290864738,-127.398027895218,"CHH","11:21063971:21065972","CGI_shore"]
[11,21501646,21501713,68,14,0.0598041188358966,0.144763106074288,-0.0849589872383909,-74.5255523978206,"CHH","Os11g0573000","intron","Os11g0573000","Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein && sp|Q84WU2|UBP13_ARATH Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 && -"]
[11,21534899,21535010,112,34,0.324617303400164,0.549695134698611,-0.225077831298447,-163.924167983264,"CG","11:21527692:21536331","CGI"]
[11,21680008,21680085,78,29,0.179085110211035,0.272085178793058,-0.0930000685820226,-126.977331732441,"CG","11:21678653:21688199","CGI"]
[11,21680008,21680085,78,29,0.179085110211035,0.272085178793058,-0.0930000685820226,-126.977331732441,"CG","Os11g0575600","intron","LIPOXYGENASE 10","Similar to Lipoxygenase (Fragment) && sp|Q7G794|LOX3_ORYSJ Putative linoleate 9S-lipoxygenase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0700400 PE=3 SV=1 && PF01477:PLAT/LH2 domain|PF00305:Lipoxygenase"]
[11,21993053,21993188,136,20,0.381620116505791,0.81157810155616,-0.42995798505037,-166.401406485878,"CG","11:21991831:21993831","CGI_shore"]
[11,21993053,21993188,136,20,0.381620116505791,0.81157810155616,-0.42995798505037,-166.401406485878,"CG","Os11g0582100","intron","Os11g0582100","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 && PF13639:Ring finger domain"]
[11,22179336,22179416,81,44,0.0421665679132368,0.112467001969463,-0.0703004340562262,-216.384666270682,"CHH","11:22178274:22179747","CGI"]
[11,22179336,22179416,81,44,0.0421665679132368,0.112467001969463,-0.0703004340562262,-216.384666270682,"CHH","Os11g0586300","promoter","Os11g0586300","Conserved hypothetical protein && - && -"]
[11,22179336,22179416,81,44,0.0421665679132368,0.112467001969463,-0.0703004340562262,-216.384666270682,"CHH","11:22179002:22181002","CGI_shore"]
[11,22289743,22289958,216,71,0.268250794592349,0.557355483645467,-0.289104689053118,-534.252916196242,"CG","11:22287953:22290325","CGI"]
[11,22340692,22340801,110,17,0.141711833867211,0.613294287314878,-0.471582453447667,-84.3315543008369,"CHG","11:22337778:22350479","CGI"]
[11,22507114,22507184,71,14,0.116643723586885,0.284883759075065,-0.16824003548818,-64.5075971100011,"CG","Os11g0592100","exon","PATHOGENESIS-RELATED GENE 4B","Similar to Barwin && sp|P28814|BARW_HORVU Barwin OS=Hordeum vulgare OX=4513 PE=1 SV=1 && PF00967:Barwin family"]
[11,22699912,22700148,237,65,0.302287428982536,0.393328847429395,-0.0910414184468592,-334.913344525543,"CG","11:22696289:22700285","CGI"]
[11,22699912,22700148,237,65,0.302287428982536,0.393328847429395,-0.0910414184468592,-334.913344525543,"CG","Os11g0596250","utr5","Os11g0596250","Conserved hypothetical protein && - && -"]
[11,22699912,22700148,237,65,0.302287428982536,0.393328847429395,-0.0910414184468592,-334.913344525543,"CG","Os11g0596250","exon","Os11g0596250","Conserved hypothetical protein && - && -"]
[11,23358973,23359030,58,15,0.0430414111139977,0.146667563440578,-0.103626152326581,-68.7079753324572,"CHH","Os11g0605500","promoter","Os11g0605500","Acyl-CoA oxidase && sp|O65201|ACOX2_ARATH Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=ACX2 PE=1 SV=2 && PF01756:Acyl-CoA oxidase|PF00441:Acyl-CoA dehydrogenase, C-terminal domain|PF02770:Acyl-CoA dehydrogenase, middle domain"]
[11,23358973,23359030,58,15,0.0430414111139977,0.146667563440578,-0.103626152326581,-68.7079753324572,"CHH","11:23358335:23360336","CGI_shore"]
[11,23367720,23367899,180,36,0.419588301740571,0.800889148414688,-0.381300846674117,-180.968408759718,"CG","11:23366034:23368035","CGI_shore"]
[11,23367720,23367899,180,36,0.419588301740571,0.800889148414688,-0.381300846674117,-180.968408759718,"CG","11:23366548:23368548","CGI_shore"]
[11,23367720,23367899,180,36,0.419588301740571,0.800889148414688,-0.381300846674117,-180.968408759718,"CG","11:23366746:23368086","CGI"]
[11,23486756,23486862,107,11,0.153223148728908,0.683381370577186,-0.530158221848279,-64.3687006921925,"CHG","11:23485775:23487776","CGI_shore"]
[11,23486756,23486862,107,11,0.153223148728908,0.683381370577186,-0.530158221848279,-64.3687006921925,"CHG","Os11g0608300","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 337","Barley stem rust resistance protein && sp|Q8S9L6|CRK29_ARATH Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana OX=3702 GN=CRK29 PE=2 SV=1 && PF00069:Protein kinase domain|PF00635:MSP (Major sperm protein) domain"]
[11,23756261,23756328,68,14,0.43279764261944,0.546454810773884,-0.113657168154444,-70.8381536586961,"CG","11:23701742:23782248","CGI"]
[11,24311944,24312004,61,11,0.560562504310902,0.727312809490344,-0.166750305179442,-43.2924025641007,"CHG","11:24310305:24312305","CGI_shore"]
[11,24311944,24312004,61,11,0.560562504310902,0.727312809490344,-0.166750305179442,-43.2924025641007,"CHG","11:24310983:24312984","CGI_shore"]
[11,24500308,24500414,107,25,0.027436099499391,0.12838172423782,-0.100945624738429,-122.324486490719,"CHH","11:24500150:24502151","CGI_shore"]
[11,24507090,24507279,190,43,0.0255096055688042,0.150819008684714,-0.12530940311591,-248.450892401911,"CHH","11:24505975:24507975","CGI_shore"]
[11,24551580,24551806,227,59,0.51087828155258,0.820525946829976,-0.309647665277396,-329.310217337789,"CG","11:24551082:24551806","CGI"]
[11,25183754,25183881,128,16,0.170427162900064,0.527066770463504,-0.35663960756344,-93.9247794136501,"CG","11:25182602:25184602","CGI_shore"]
[11,25183754,25183881,128,16,0.170427162900064,0.527066770463504,-0.35663960756344,-93.9247794136501,"CG","11:25183169:25185170","CGI_shore"]
[11,25183754,25183881,128,16,0.170427162900064,0.527066770463504,-0.35663960756344,-93.9247794136501,"CG","Os11g0637600","promoter","Os11g0637600","Similar to potyvirus VPg interacting protein && sp|Q9S736|OBE1_ARATH Protein OBERON 1 OS=Arabidopsis thaliana OX=3702 GN=OBE1 PE=1 SV=1 && PF07227:PHD - plant homeodomain finger protein"]
[11,25496711,25496801,91,12,0.0527874451425176,0.148972069307228,-0.0961846241647101,-80.7568342692895,"CHH","Os11g0642800","exon","Os11g0642800","Similar to Glutathione synthetase && sp|O23732|GSHB_BRAJU Glutathione synthetase, chloroplastic OS=Brassica juncea OX=3707 GN=GSH2 PE=2 SV=1 && PF03199:Eukaryotic glutathione synthase|PF03917:Eukaryotic glutathione synthase, ATP binding domain"]
[11,25496711,25496801,91,12,0.0527874451425176,0.148972069307228,-0.0961846241647101,-80.7568342692895,"CHH","Os11g0642800","utr3","Os11g0642800","Similar to Glutathione synthetase && sp|O23732|GSHB_BRAJU Glutathione synthetase, chloroplastic OS=Brassica juncea OX=3707 GN=GSH2 PE=2 SV=1 && PF03199:Eukaryotic glutathione synthase|PF03917:Eukaryotic glutathione synthase, ATP binding domain"]
[11,25497678,25497733,56,21,0.258634066499374,0.369191224106199,-0.110557157606825,-99.9612861243151,"CG","Os11g0642900","exon","Os11g0642900","Hypothetical protein && - && -"]
[11,26288482,26288658,177,21,0.300264892337461,0.688723365119644,-0.388458472782183,-110.401131813661,"CG","Os11g0656500","exon","Os11g0656500","Integrase, catalytic core domain containing protein && sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 && PF07727:Reverse transcriptase (RNA-dependent DNA polymerase)|PF13976:GAG-pre-integrase domain|PF14223:gag-polypeptide of LTR copia-type|PF00665:Integrase core domain"]
[11,26288482,26288658,177,21,0.300264892337461,0.688723365119644,-0.388458472782183,-110.401131813661,"CG","11:26288031:26291519","CGI"]
[11,26422851,26422918,68,10,0.0624735348377674,0.264417799899026,-0.201944265061259,-53.9907501015941,"CG","Os11g0658800","intron","Os11g0658800","Pectin lyase fold/virulence factor domain containing protein && sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[11,26461861,26462098,238,98,0.0688541972276011,0.250762810273031,-0.18190861304543,-853.573123139892,"CG","Os11g0659400","intron","Os11g0659400","Hypothetical conserved gene && - && PF12854:PPR repeat|PF13041:PPR repeat family"]
[11,26461861,26462098,238,98,0.0688541972276011,0.250762810273031,-0.18190861304543,-853.573123139892,"CG","11:26461474:26462388","CGI"]
[11,26531289,26531454,166,37,0.692099610554516,0.902657365973016,-0.210557755418501,-150.018043836177,"CG","11:26529884:26531885","CGI_shore"]
[11,26531289,26531454,166,37,0.692099610554516,0.902657365973016,-0.210557755418501,-150.018043836177,"CG","11:26530720:26532102","CGI"]
[11,26531289,26531454,166,37,0.692099610554516,0.902657365973016,-0.210557755418501,-150.018043836177,"CG","Os11g0661000","promoter","Os11g0661000","Pentatricopeptide repeat domain containing protein && sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H13 PE=1 SV=3 && PF17177:Pentacotripeptide-repeat region of PRORP|PF14432:DYW family of nucleic acid deaminases|PF01535:PPR repeat"]
[11,26598395,26598538,144,33,0.564294163433491,0.848362418412351,-0.28406825497886,-159.214232898612,"CG","11:26598174:26600150","CGI"]
[11,26805006,26805228,223,40,0.267354332030857,0.439165323098163,-0.171810991067306,-236.232944025273,"CG","11:26805080:26806247","CGI"]
[11,26805006,26805228,223,40,0.267354332030857,0.439165323098163,-0.171810991067306,-236.232944025273,"CG","11:26803054:26805055","CGI_shore"]
[11,26805006,26805228,223,40,0.267354332030857,0.439165323098163,-0.171810991067306,-236.232944025273,"CG","11:26803079:26805079","CGI_shore"]
[11,27601442,27601705,264,25,0.255221703299219,0.638551047757113,-0.383329344457893,-169.12703367044,"CG","11:27598141:27601551","CGI"]
[11,27601442,27601705,264,25,0.255221703299219,0.638551047757113,-0.383329344457893,-169.12703367044,"CG","11:27601551:27603552","CGI_shore"]
[11,27715308,27715520,213,33,0.268424454701069,0.453292038508142,-0.184867583807074,-144.030770711759,"CG","11:27713326:27715326","CGI_shore"]
[11,27715308,27715520,213,33,0.268424454701069,0.453292038508142,-0.184867583807074,-144.030770711759,"CG","Os11g0685100","intron","Os11g0685100","Hypothetical gene && - && -"]
[11,27715308,27715520,213,33,0.268424454701069,0.453292038508142,-0.184867583807074,-144.030770711759,"CG","Os11g0685100","exon","Os11g0685100","Hypothetical gene && - && -"]
[11,27715308,27715520,213,33,0.268424454701069,0.453292038508142,-0.184867583807074,-144.030770711759,"CG","11:27715327:27717852","CGI"]
[11,27715308,27715520,213,33,0.268424454701069,0.453292038508142,-0.184867583807074,-144.030770711759,"CG","Os11g0685200","promoter","Os11g0685200","Hypothetical protein && - && -"]
[11,27800800,27800893,94,18,0.0365324487184318,0.282477210976078,-0.245944762257646,-110.685933031981,"CHH","11:27799720:27801721","CGI_shore"]
[11,28017194,28017271,78,20,0.442184735515818,0.718403165849273,-0.276218430333455,-91.8257603250147,"CHG","11:28015653:28019337","CGI"]
[11,28036474,28036550,77,17,0.724994005767035,0.884777492616277,-0.159783486849242,-78.9025728468655,"CG","11:28035980:28050430","CGI"]
[11,28712628,28712827,200,49,0.55361416617716,0.846612003070044,-0.292997836892884,-248.238896919228,"CG","11:28712486:28713555","CGI"]
[11,28771009,28771286,278,54,0.531129484245708,0.814483726325428,-0.28335424207972,-454.89979791752,"CG","Os11g0702501","exon","Os11g0702501","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28771009,28771286,278,54,0.531129484245708,0.814483726325428,-0.28335424207972,-454.89979791752,"CG","Os11g0702600","exon","Os11g0702600","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28771009,28771286,278,54,0.531129484245708,0.814483726325428,-0.28335424207972,-454.89979791752,"CG","Os11g0702501","intron","Os11g0702501","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28771009,28771286,278,54,0.531129484245708,0.814483726325428,-0.28335424207972,-454.89979791752,"CG","Os11g0702600","intron","Os11g0702600","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28771049,28771292,244,24,0.267899757846583,0.564983863314659,-0.297084105468077,-137.215671483425,"CHG","Os11g0702501","exon","Os11g0702501","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28771049,28771292,244,24,0.267899757846583,0.564983863314659,-0.297084105468077,-137.215671483425,"CHG","Os11g0702600","exon","Os11g0702600","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28771049,28771292,244,24,0.267899757846583,0.564983863314659,-0.297084105468077,-137.215671483425,"CHG","Os11g0702501","intron","Os11g0702501","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28771049,28771292,244,24,0.267899757846583,0.564983863314659,-0.297084105468077,-137.215671483425,"CHG","Os11g0702600","intron","Os11g0702600","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[11,28944556,28944610,55,21,0.183336848579242,0.290760195411388,-0.107423346832146,-117.532495490145,"CHH","11:28943715:28945716","CGI_shore"]
[12,77878,77999,122,37,0.12517148851591,0.342355800012712,-0.217184311496802,-219.20890577869,"CHH","Os12g0101800","intron","Os12g0101800","Similar to Nonphototrophic hypocotyl 1a && sp|Q2QYY8|PHT1A_ORYSJ Phototropin-1A OS=Oryza sativa subsp. japonica OX=39947 GN=PHOT1A PE=1 SV=2 && -"]
[12,77878,77999,122,37,0.12517148851591,0.342355800012712,-0.217184311496802,-219.20890577869,"CHH","12:77677:79677","CGI_shore"]
[12,161465,161524,60,5,0.193592838674534,0.542700398988534,-0.349107560313999,-21.006857226497,"CG","12:160007:162008","CGI_shore"]
[12,161465,161524,60,5,0.193592838674534,0.542700398988534,-0.349107560313999,-21.006857226497,"CG","12:161312:163313","CGI_shore"]
[12,503490,503552,63,16,0.0216794830449117,0.20423734093399,-0.182557857889078,-77.5994873148323,"CHH","12:502254:504255","CGI_shore"]
[12,503490,503552,63,16,0.0216794830449117,0.20423734093399,-0.182557857889078,-77.5994873148323,"CHH","Os12g0109300","promoter","Os12g0109300","Pentatricopeptide repeat domain containing protein && sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H84 PE=3 SV=1 && -"]
[12,503490,503552,63,16,0.0216794830449117,0.20423734093399,-0.182557857889078,-77.5994873148323,"CHH","12:502931:503534","CGI"]
[12,503490,503552,63,16,0.0216794830449117,0.20423734093399,-0.182557857889078,-77.5994873148323,"CHH","12:503534:505535","CGI_shore"]
[12,510008,510172,165,8,0.264488190199055,0.690322432253793,-0.425834242054738,-38.2194644393457,"CHG","12:508573:510573","CGI_shore"]
[12,527831,527883,53,5,0.253960005177787,0.500878673047304,-0.246918667869517,-22.0324057321238,"CHG","12:525941:527942","CGI_shore"]
[12,527831,527883,53,5,0.253960005177787,0.500878673047304,-0.246918667869517,-22.0324057321238,"CHG","Os12g0109700","promoter","Os12g0109700","Protein of unknown function DUF2985 domain containing protein && - && -"]
[12,570722,570780,59,18,0.0468735829905845,0.204449547077057,-0.157575964086472,-88.1138528249498,"CHH","12:568331:585416","CGI"]
[12,578103,578275,173,53,0.246920685084317,0.365119174435673,-0.118198489351356,-246.223630610296,"CG","Os12g0110700","exon","Os12g0110700","Conserved hypothetical protein && sp|O65451|FB333_ARATH Probable F-box protein At4g22030 OS=Arabidopsis thaliana OX=3702 GN=At4g22030 PE=4 SV=1 && PF14476:Petal formation-expressed"]
[12,578103,578275,173,53,0.246920685084317,0.365119174435673,-0.118198489351356,-246.223630610296,"CG","12:568331:585416","CGI"]
[12,973994,974060,67,23,0.05324077332188,0.200890300597513,-0.147649527275633,-111.332405297746,"CHH","Os12g0120400","intron","Os12g0120400","Similar to ATPase-like protein && sp|F4KEV7|FHIT_ARATH Bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT OS=Arabidopsis thaliana OX=3702 GN=FHIT PE=1 SV=1 && -"]
[12,1912296,1912376,81,27,0.611145177472828,0.773573766294819,-0.162428588821991,-142.857565970092,"CG","12:1911650:1914911","CGI"]
[12,1912309,1912369,61,18,0.39243252086587,0.58300104098671,-0.190568520120839,-96.3195090386903,"CHG","12:1911650:1914911","CGI"]
[12,2192875,2193154,280,33,0.614429647752384,0.807400082288334,-0.19297043453595,-178.52200605984,"CG","Os12g0144600","promoter","Os12g0144600","Heavy metal transport/detoxification protein domain containing protein && sp|Q9M8K5|HIP32_ARATH Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana OX=3702 GN=HIPP32 PE=2 SV=1 && PF00403:Heavy-metal-associated domain"]
[12,2192875,2193154,280,33,0.614429647752384,0.807400082288334,-0.19297043453595,-178.52200605984,"CG","12:2191950:2193951","CGI_shore"]
[12,2192875,2193154,280,33,0.614429647752384,0.807400082288334,-0.19297043453595,-178.52200605984,"CG","12:2192679:2194680","CGI_shore"]
[12,2192875,2193154,280,33,0.614429647752384,0.807400082288334,-0.19297043453595,-178.52200605984,"CG","12:2192790:2194790","CGI_shore"]
[12,2375001,2375099,99,19,0.316664315027553,0.516132517978497,-0.199468202950943,-101.052032227177,"CHG","Os12g0148400","intron","Os12g0148400","Similar to HEAT repeat family protein, expressed && - && PF13001:Proteasome stabiliser|PF13976:GAG-pre-integrase domain"]
[12,2441799,2441867,69,21,0.0973768819605144,0.218586874835156,-0.121209992874641,-98.7471129454205,"CHH","Os12g0149700","intron","Os12g0149700","Similar to Protein kinase KIPK && sp|Q9SJM3|KIPK2_ARATH Serine/threonine-protein kinase KIPK2 OS=Arabidopsis thaliana OX=3702 GN=KIPK2 PE=1 SV=1 && -"]
[12,2441799,2441867,69,21,0.0973768819605144,0.218586874835156,-0.121209992874641,-98.7471129454205,"CHH","12:2441659:2443660","CGI_shore"]
[12,2747445,2747518,74,14,0.125685511370752,0.340861877856944,-0.215176366486193,-64.5228031808279,"CG","12:2744783:2752460","CGI"]
[12,2747445,2747518,74,14,0.125685511370752,0.340861877856944,-0.215176366486193,-64.5228031808279,"CG","Os12g0156000","promoter","Os12g0156000","Similar to OSIGBa0134P10.11 protein && - && PF04520:Senescence regulator"]
[12,2819460,2819629,170,37,0.713593831623842,0.8664149720929,-0.152821140469057,-189.843622971639,"CG","12:2818309:2820309","CGI_shore"]
[12,2819460,2819629,170,37,0.713593831623842,0.8664149720929,-0.152821140469057,-189.843622971639,"CG","12:2819273:2819630","CGI"]
[12,2819460,2819629,170,37,0.713593831623842,0.8664149720929,-0.152821140469057,-189.843622971639,"CG","Os12g0156866","exon","cationic amino acid transporter 9","Similar to Amino acid permease family protein, expressed && sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAT6 PE=2 SV=1 && PF13520:Amino acid permease|PF13906:C-terminus of AA_permease"]
[12,2819460,2819629,170,37,0.713593831623842,0.8664149720929,-0.152821140469057,-189.843622971639,"CG","Os12g0156883","exon","Os12g0156883","Hypothetical protein && sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAT6 PE=2 SV=1 && -"]
[12,2819460,2819629,170,37,0.713593831623842,0.8664149720929,-0.152821140469057,-189.843622971639,"CG","Os12g0156883","utr5","Os12g0156883","Hypothetical protein && sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAT6 PE=2 SV=1 && -"]
[12,2820382,2820462,81,16,0.698449262452358,0.845632637281763,-0.147183374829405,-77.9666212642422,"CG","12:2819630:2821631","CGI_shore"]
[12,2820382,2820462,81,16,0.698449262452358,0.845632637281763,-0.147183374829405,-77.9666212642422,"CG","12:2820299:2822299","CGI_shore"]
[12,2820382,2820462,81,16,0.698449262452358,0.845632637281763,-0.147183374829405,-77.9666212642422,"CG","Os12g0156866","exon","cationic amino acid transporter 9","Similar to Amino acid permease family protein, expressed && sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAT6 PE=2 SV=1 && PF13520:Amino acid permease|PF13906:C-terminus of AA_permease"]
[12,2820382,2820462,81,16,0.698449262452358,0.845632637281763,-0.147183374829405,-77.9666212642422,"CG","12:2820310:2820535","CGI"]
[12,2820382,2820462,81,16,0.698449262452358,0.845632637281763,-0.147183374829405,-77.9666212642422,"CG","Os12g0156883","exon","Os12g0156883","Hypothetical protein && sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAT6 PE=2 SV=1 && -"]
[12,2820382,2820462,81,16,0.698449262452358,0.845632637281763,-0.147183374829405,-77.9666212642422,"CG","Os12g0156883","utr5","Os12g0156883","Hypothetical protein && sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAT6 PE=2 SV=1 && -"]
[12,2860194,2860297,104,33,0.0557644635327929,0.297190189857853,-0.24142572632506,-181.528977530796,"CHH","12:2858453:2860453","CGI_shore"]
[12,2860194,2860297,104,33,0.0557644635327929,0.297190189857853,-0.24142572632506,-181.528977530796,"CHH","12:2859420:2861421","CGI_shore"]
[12,2936909,2937001,93,12,0.587437346640563,0.821128622591507,-0.233691275950944,-62.0938544539667,"CG","12:2935610:2937611","CGI_shore"]
[12,2936909,2937001,93,12,0.587437346640563,0.821128622591507,-0.233691275950944,-62.0938544539667,"CG","Os12g0158700","promoter","Os12g0158700","Conserved hypothetical protein && - && -"]
[12,3128483,3128581,99,19,0.00567981958459352,0.102004884562261,-0.0963250649776679,-124.1239159638,"CHH","12:3126705:3128706","CGI_shore"]
[12,3438109,3438204,96,36,0.0506823945318002,0.168059999110623,-0.117377604578823,-173.197632278929,"CG","Os12g0168100","exon","ETHYLENE RESPONSE FACTOR 124","Similar to AP2 domain containing protein RAP2.6 (Fragment) && sp|Q9FGF8|ABR1_ARATH Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana OX=3702 GN=ABR1 PE=2 SV=1 && -"]
[12,3438109,3438204,96,36,0.0506823945318002,0.168059999110623,-0.117377604578823,-173.197632278929,"CG","12:3437627:3440057","CGI"]
[12,3438109,3438204,96,36,0.0506823945318002,0.168059999110623,-0.117377604578823,-173.197632278929,"CG","Os12g0168150","exon","Os12g0168150","Hypothetical gene && sp|Q9FGF8|ABR1_ARATH Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana OX=3702 GN=ABR1 PE=2 SV=1 && -"]
[12,3948540,3948596,57,6,0.552963584433619,0.913190057228334,-0.360226472794715,-28.3741194740462,"CG","12:3947362:3949363","CGI_shore"]
[12,3970619,3970673,55,11,0.816380878197348,0.933701622381655,-0.117320744184306,-39.7736884527546,"CG","Os12g0178300","exon","Os12g0178300","Similar to ankyrin-like protein && sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana OX=3702 GN=At5g64030 PE=2 SV=1 && PF03141:Putative S-adenosyl-L-methionine-dependent methyltransferase"]
[12,3970619,3970673,55,11,0.816380878197348,0.933701622381655,-0.117320744184306,-39.7736884527546,"CG","12:3967441:3986577","CGI"]
[12,3997507,3997655,149,19,0.320300298312594,0.594817391157747,-0.274517092845153,-120.390734837686,"CG","12:3997284:3997695","CGI"]
[12,4143789,4143858,70,10,0.308927281665118,0.620157947773024,-0.311230666107905,-55.3521145177992,"CG","Os12g0181701","promoter","Os12g0181701","Hypothetical protein && sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana OX=3702 GN=AAP3 PE=1 SV=2 && -"]
[12,4146812,4146875,64,20,0.083755463422457,0.214385995773287,-0.13063053235083,-96.1795429272428,"CHH","Os12g0181600","promoter","amino acid permease 11B, amino acid permease 15, amino acid/auxin permease 15","Amino acid transporter, transmembrane domain containing protein && sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana OX=3702 GN=AAP3 PE=1 SV=2 && PF01490:Transmembrane amino acid transporter protein"]
[12,4161212,4161422,211,65,0.162431393642949,0.288703124933168,-0.12627173129022,-317.431011941583,"CHH","12:4160384:4162384","CGI_shore"]
[12,4221223,4221338,116,15,0.315876284799946,0.729097659884263,-0.413221375084317,-82.0246866464269,"CG","Os12g0183450","exon","Os12g0183450","Similar to OSIGBa0104J13.2 protein && - && -"]
[12,4221223,4221338,116,15,0.315876284799946,0.729097659884263,-0.413221375084317,-82.0246866464269,"CG","Os12g0183450","utr5","Os12g0183450","Similar to OSIGBa0104J13.2 protein && - && -"]
[12,4221223,4221338,116,15,0.315876284799946,0.729097659884263,-0.413221375084317,-82.0246866464269,"CG","Os12g0183450","TSS","Os12g0183450","Similar to OSIGBa0104J13.2 protein && - && -"]
[12,4221223,4221338,116,15,0.315876284799946,0.729097659884263,-0.413221375084317,-82.0246866464269,"CG","Os12g0183450","promoter","Os12g0183450","Similar to OSIGBa0104J13.2 protein && - && -"]
[12,4221223,4221338,116,15,0.315876284799946,0.729097659884263,-0.413221375084317,-82.0246866464269,"CG","12:4219158:4236182","CGI"]
[12,4425888,4425956,69,13,0.0590451576780436,0.137769455948419,-0.0787242982703758,-74.2049324036851,"CHH","12:4424313:4426313","CGI_shore"]
[12,4425888,4425956,69,13,0.0590451576780436,0.137769455948419,-0.0787242982703758,-74.2049324036851,"CHH","12:4424982:4426983","CGI_shore"]
[12,4457188,4457249,62,19,0.0160182088737309,0.120060545418849,-0.104042336545118,-101.782831927473,"CHH","12:4455846:4457847","CGI_shore"]
[12,4457188,4457249,62,19,0.0160182088737309,0.120060545418849,-0.104042336545118,-101.782831927473,"CHH","Os12g0188566","intron","Os12g0188566","Similar to Thioredoxin (TRX) && sp|Q9ZP20|TRXM5_ORYSJ Thioredoxin M5, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TRXM PE=2 SV=1 && PF00085:Thioredoxin"]
[12,4526401,4526547,147,45,0.192789208821635,0.391767295017371,-0.198978086195736,-273.197078308773,"CHH","Os12g0189900","promoter","Os12g0189900","Las1-like family protein && - && -"]
[12,4526401,4526547,147,45,0.192789208821635,0.391767295017371,-0.198978086195736,-273.197078308773,"CHH","12:4525389:4527389","CGI_shore"]
[12,5398825,5398951,127,37,0.0337304771561512,0.141747865101114,-0.108017387944962,-201.981798442106,"CHH","Os12g0203200","promoter","Os12g0203200","Conserved hypothetical protein && - && -"]
[12,5398825,5398951,127,37,0.0337304771561512,0.141747865101114,-0.108017387944962,-201.981798442106,"CHH","12:5397878:5399879","CGI_shore"]
[12,5432866,5432989,124,33,0.582999004959915,0.833880279862179,-0.250881274902264,-140.9443294001,"CG","12:5432584:5433095","CGI"]
[12,5432866,5432989,124,33,0.582999004959915,0.833880279862179,-0.250881274902264,-140.9443294001,"CG","Os12g0204000","exon","Os12g0204000","Similar to HAT family dimerisation domain containing protein && - && PF14372:Domain of unknown function (DUF4413)|PF05699:hAT family C-terminal dimerisation region"]
[12,5510868,5510987,120,24,0.414535017111004,0.75303587266304,-0.338500855552036,-110.896516841403,"CG","12:5509543:5511543","CGI_shore"]
[12,5510868,5510987,120,24,0.414535017111004,0.75303587266304,-0.338500855552036,-110.896516841403,"CG","12:5510471:5512472","CGI_shore"]
[12,5510868,5510987,120,24,0.414535017111004,0.75303587266304,-0.338500855552036,-110.896516841403,"CG","Os12g0205500","intron","Os12g0205500","NB-ARC domain containing protein && sp|Q940K0|UNI_ARATH Disease resistance protein UNI OS=Arabidopsis thaliana OX=3702 GN=UNI PE=1 SV=2 && PF00931:NB-ARC domain"]
[12,5752152,5752344,193,16,0.337376299513806,0.720539572190425,-0.383163272676618,-115.308420078116,"CG","Os12g0209901","promoter","Os12g0209901","Similar to NB-ARC domain containing protein, expressed && sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=RGA4 PE=2 SV=1 && PF00931:NB-ARC domain"]
[12,5752844,5753115,272,20,0.292557220925438,0.687169753692656,-0.394612532767218,-135.751417312791,"CG","Os12g0209901","promoter","Os12g0209901","Similar to NB-ARC domain containing protein, expressed && sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=RGA4 PE=2 SV=1 && PF00931:NB-ARC domain"]
[12,5752844,5753115,272,20,0.292557220925438,0.687169753692656,-0.394612532767218,-135.751417312791,"CG","Os12g0210000","exon","Os12g0210000","Similar to NB-ARC domain containing protein, expressed && - && -"]
[12,5752844,5753115,272,20,0.292557220925438,0.687169753692656,-0.394612532767218,-135.751417312791,"CG","12:5752512:5754512","CGI_shore"]
[12,5752844,5753115,272,20,0.292557220925438,0.687169753692656,-0.394612532767218,-135.751417312791,"CG","Os12g0210000","utr5","Os12g0210000","Similar to NB-ARC domain containing protein, expressed && - && -"]
[12,5849485,5849665,181,22,0.155140079574781,0.430514907815566,-0.275374828240784,-141.998238576457,"CHH","12:5847666:5849666","CGI_shore"]
[12,5849485,5849665,181,22,0.155140079574781,0.430514907815566,-0.275374828240784,-141.998238576457,"CHH","Os12g0211400","promoter","Os12g0211400","A/G-specific adenine glycosylase MutY, bacterial form domain containing protein && sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase OS=Arabidopsis thaliana OX=3702 GN=MYH PE=3 SV=1 && PF14815:NUDIX domain|PF00730:HhH-GPD superfamily base excision DNA repair protein"]
[12,5849485,5849665,181,22,0.155140079574781,0.430514907815566,-0.275374828240784,-141.998238576457,"CHH","12:5848205:5850206","CGI_shore"]
[12,6051685,6051752,68,12,0.0958576272545827,0.323829446103932,-0.227971818849349,-55.365130063195,"CG","12:6051153:6052027","CGI"]
[12,6126710,6126819,110,32,0.0695086099615835,0.313674770000319,-0.244166160038736,-184.684949621576,"CHH","12:6124953:6126953","CGI_shore"]
[12,6499557,6499639,83,12,0.153279245687628,0.263233712325303,-0.109954466637676,-45.0358768562318,"CHG","12:6498675:6500675","CGI_shore"]
[12,6499557,6499639,83,12,0.153279245687628,0.263233712325303,-0.109954466637676,-45.0358768562318,"CHG","12:6498698:6499984","CGI"]
[12,6675659,6675870,212,37,0.66937127022494,0.860800011031917,-0.191428740806977,-182.172960591174,"CG","12:6673883:6675884","CGI_shore"]
[12,6675659,6675870,212,37,0.66937127022494,0.860800011031917,-0.191428740806977,-182.172960591174,"CG","12:6674977:6676978","CGI_shore"]
[12,6675659,6675870,212,37,0.66937127022494,0.860800011031917,-0.191428740806977,-182.172960591174,"CG","12:6675593:6677593","CGI_shore"]
[12,6675659,6675870,212,37,0.66937127022494,0.860800011031917,-0.191428740806977,-182.172960591174,"CG","Os12g0223300","promoter","Os12g0223300","Similar to Outer membrane cytochrome b(5) (Fragment) && sp|O04354|CYB5_BOROF Cytochrome b5 OS=Borago officinalis OX=13363 PE=2 SV=1 && -"]
[12,6686868,6686953,86,9,0.276124654536767,0.630630810058737,-0.35450615552197,-44.4921043947181,"CHG","12:6686828:6687830","CGI"]
[12,6899801,6899942,142,14,0.211982141100996,0.63222593940371,-0.420243798302714,-81.3212237478775,"CHG","12:6898636:6904998","CGI"]
[12,7052959,7053045,87,11,0.647508651847916,0.897153659201555,-0.249645007353638,-49.8776236412752,"CG","12:7049474:7056407","CGI"]
[12,7240141,7240296,156,39,0.0274198648409476,0.346441366931377,-0.319021502090429,-282.21779154061,"CHH","12:7237614:7244396","CGI"]
[12,7459146,7459203,58,6,0.351881874589537,0.611923743886491,-0.260041869296954,-23.0187086079295,"CHG","Os12g0236225","promoter","Os12g0236225","Conserved hypothetical protein && - && -"]
[12,7459146,7459203,58,6,0.351881874589537,0.611923743886491,-0.260041869296954,-23.0187086079295,"CHG","12:7458120:7460121","CGI_shore"]
[12,7591131,7591271,141,18,0.406326134677849,0.68373613521513,-0.277410000537281,-75.2385666347371,"CHG","12:7590336:7592337","CGI_shore"]
[12,7647861,7647935,75,27,0.0516569759728048,0.141578651493352,-0.0899216755205477,-126.368260224106,"CG","Os12g0238400","exon","Os12g0238400","Conserved hypothetical protein && - && -"]
[12,7895749,7895856,108,26,0.162408882333776,0.313342531489111,-0.150933649155334,-117.786730164369,"CG","12:7895631:7896257","CGI"]
[12,8075513,8075563,51,9,0.438315203025162,0.749341182070437,-0.311025979045275,-35.8442800656599,"CG","12:8073763:8075763","CGI_shore"]
[12,8075513,8075563,51,9,0.438315203025162,0.749341182070437,-0.311025979045275,-35.8442800656599,"CG","12:8074096:8076097","CGI_shore"]
[12,8075513,8075563,51,9,0.438315203025162,0.749341182070437,-0.311025979045275,-35.8442800656599,"CG","Os12g0245700","promoter","Os12g0245700","Hypothetical conserved gene && - && -"]
[12,8544378,8544447,70,6,0.321171113722648,0.518831053851124,-0.197659940128476,-27.1606177797779,"CHG","12:8542507:8544508","CGI_shore"]
[12,8544378,8544447,70,6,0.321171113722648,0.518831053851124,-0.197659940128476,-27.1606177797779,"CHG","12:8543291:8545292","CGI_shore"]
[12,8702504,8702563,60,18,0.564300149749146,0.809359683394498,-0.245059533645352,-78.8588665043511,"CG","12:8702236:8702895","CGI"]
[12,8716421,8716524,104,9,0.123243419837727,0.780546154191114,-0.657302734353387,-62.0121692360693,"CG","12:8715254:8717255","CGI_shore"]
[12,8716421,8716524,104,9,0.123243419837727,0.780546154191114,-0.657302734353387,-62.0121692360693,"CG","12:8716150:8716969","CGI"]
[12,8764624,8764689,66,11,0.627713970262964,0.714534165560025,-0.0868201952970614,-35.4969139696306,"CHG","12:8764424:8766425","CGI_shore"]
[12,8770180,8770642,463,68,0.0326234285014625,0.26962817998252,-0.237004751481057,-420.788823815502,"CHH","12:8767189:8775241","CGI"]
[12,8956714,8956916,203,27,0.0694566104746792,0.294496489222904,-0.225039878748225,-141.090146409152,"CHH","12:8954863:8956863","CGI_shore"]
[12,8956714,8956916,203,27,0.0694566104746792,0.294496489222904,-0.225039878748225,-141.090146409152,"CHH","12:8956864:8958075","CGI"]
[12,9292900,9292960,61,18,0.0368047967166176,0.183799244834229,-0.146994448117611,-97.6072490649522,"CHH","Os12g0263600","promoter","Os12g0263600","Similar to Isoflavone reductase-like protein 1 && sp|P52581|IFRH_LUPAL Isoflavone reductase homolog OS=Lupinus albus OX=3870 PE=2 SV=1 && -"]
[12,9292900,9292960,61,18,0.0368047967166176,0.183799244834229,-0.146994448117611,-97.6072490649522,"CHH","12:9291558:9293559","CGI_shore"]
[12,9353003,9353168,166,41,0.257186361126204,0.399098921501857,-0.141912560375654,-199.75598726817,"CG","Os12g0264500","intron","Os12g0264500","Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase) && sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=CHY1 PE=1 SV=1 && PF16113:Enoyl-CoA hydratase/isomerase"]
[12,9353003,9353168,166,41,0.257186361126204,0.399098921501857,-0.141912560375654,-199.75598726817,"CG","12:9351502:9353503","CGI_shore"]
[12,9353003,9353168,166,41,0.257186361126204,0.399098921501857,-0.141912560375654,-199.75598726817,"CG","Os12g0264500","promoter","Os12g0264500","Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase) && sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=CHY1 PE=1 SV=1 && PF16113:Enoyl-CoA hydratase/isomerase"]
[12,9353003,9353168,166,41,0.257186361126204,0.399098921501857,-0.141912560375654,-199.75598726817,"CG","12:9352578:9353929","CGI"]
[12,9353818,9353921,104,18,0.597636931933258,0.77518115136964,-0.177544219436381,-84.760741377736,"CG","12:9352578:9353929","CGI"]
[12,9353818,9353921,104,18,0.597636931933258,0.77518115136964,-0.177544219436381,-84.760741377736,"CG","Os12g0264500","intron","Os12g0264500","Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase) && sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=CHY1 PE=1 SV=1 && PF16113:Enoyl-CoA hydratase/isomerase"]
[12,9353818,9353921,104,18,0.597636931933258,0.77518115136964,-0.177544219436381,-84.760741377736,"CG","Os12g0264500","exon","Os12g0264500","Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coenzyme A hydrolase) && sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=CHY1 PE=1 SV=1 && PF16113:Enoyl-CoA hydratase/isomerase"]
[12,9397892,9398001,110,10,0.390532472491714,0.772965962489983,-0.382433489998269,-72.4448668448374,"CG","Os12g0265100","exon","Os12g0265100","Similar to Pinoresinol-lariciresinol reductase TH2 && sp|P52581|IFRH_LUPAL Isoflavone reductase homolog OS=Lupinus albus OX=3870 PE=2 SV=1 && PF05368:NmrA-like family"]
[12,9455616,9455799,184,28,0.380885060959426,0.698039789061004,-0.317154728101579,-134.774323074072,"CHG","12:9448578:9456999","CGI"]
[12,9604335,9604463,129,7,0.180537355144783,0.495294605968621,-0.314757250823837,-33.7509503615978,"CG","12:9603433:9605433","CGI_shore"]
[12,9797586,9797707,122,11,0.345282892071001,0.653233702266703,-0.307950810195703,-53.0224080619833,"CHG","12:9797446:9799446","CGI_shore"]
[12,9945631,9945686,56,13,0.235445094497521,0.564423515765866,-0.328978421268345,-61.6875819621657,"CHG","12:9944809:9946809","CGI_shore"]
[12,9945631,9945686,56,13,0.235445094497521,0.564423515765866,-0.328978421268345,-61.6875819621657,"CHG","12:9944947:9946948","CGI_shore"]
[12,10125278,10125356,79,19,0.629971584367821,0.850990174760958,-0.221018590393137,-85.1784658211332,"CG","12:10123983:10125984","CGI_shore"]
[12,10125278,10125356,79,19,0.629971584367821,0.850990174760958,-0.221018590393137,-85.1784658211332,"CG","12:10124848:10126932","CGI"]
[12,10126370,10126462,93,39,0.0196140705896129,0.12725873715288,-0.107644666563267,-187.840014598686,"CHH","12:10124848:10126932","CGI"]
[12,10176651,10176804,154,18,0.450571606030384,0.695059430903096,-0.244487824872712,-85.8945827120043,"CHG","12:10175269:10177269","CGI_shore"]
[12,10176651,10176804,154,18,0.450571606030384,0.695059430903096,-0.244487824872712,-85.8945827120043,"CHG","12:10175673:10177674","CGI_shore"]
[12,10176651,10176804,154,18,0.450571606030384,0.695059430903096,-0.244487824872712,-85.8945827120043,"CHG","12:10176315:10176744","CGI"]
[12,10176651,10176804,154,18,0.450571606030384,0.695059430903096,-0.244487824872712,-85.8945827120043,"CHG","12:10176744:10178745","CGI_shore"]
[12,10430024,10430075,52,9,0.399533691764,0.604200975880726,-0.204667284116725,-35.764883326685,"CHG","12:10429321:10430079","CGI"]
[12,10430024,10430075,52,9,0.399533691764,0.604200975880726,-0.204667284116725,-35.764883326685,"CHG","12:10429741:10431741","CGI_shore"]
[12,10457386,10457471,86,12,0.146172636811232,0.435759658217505,-0.289587021406273,-66.6379152588738,"CG","12:10456346:10458346","CGI_shore"]
[12,10457386,10457471,86,12,0.146172636811232,0.435759658217505,-0.289587021406273,-66.6379152588738,"CG","Os12g0278900","exon","Os12g0278900","Peptidase C1A, papain family protein && sp|Q9STL5|CEP3_ARATH KDEL-tailed cysteine endopeptidase CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=2 SV=1 && -"]
[12,10457386,10457471,86,12,0.146172636811232,0.435759658217505,-0.289587021406273,-66.6379152588738,"CG","12:10456914:10458915","CGI_shore"]
[12,10457386,10457471,86,12,0.146172636811232,0.435759658217505,-0.289587021406273,-66.6379152588738,"CG","Os12g0279000","promoter","Os12g0279000","Helicase, C-terminal domain containing protein && sp|Q9XIF2|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1 && -"]
[12,10994830,10994913,84,21,0.341897511556723,0.48574349300699,-0.143845981450267,-89.6056193773715,"CG","12:10994083:10996083","CGI_shore"]
[12,10994830,10994913,84,21,0.341897511556723,0.48574349300699,-0.143845981450267,-89.6056193773715,"CG","Os12g0287800","promoter","Os12g0287800","Hypothetical conserved gene && - && -"]
[12,10994830,10994913,84,21,0.341897511556723,0.48574349300699,-0.143845981450267,-89.6056193773715,"CG","12:10994362:10996363","CGI_shore"]
[12,10994830,10994913,84,21,0.341897511556723,0.48574349300699,-0.143845981450267,-89.6056193773715,"CG","Target=RETROFIT_I-int:64-461;Class=LTR/Copia","repeat"]
[12,10999449,10999642,194,39,8.62435403628466E-3,0.134822390991866,-0.126198036955582,-255.160740884651,"CHH","12:10998779:11000780","CGI_shore"]
[12,10999449,10999642,194,39,8.62435403628466E-3,0.134822390991866,-0.126198036955582,-255.160740884651,"CHH","Os12g0288000","utr3","OsSTA278","Similar to cDNA clone:J023146F15, full insert sequence && - && -"]
[12,10999449,10999642,194,39,8.62435403628466E-3,0.134822390991866,-0.126198036955582,-255.160740884651,"CHH","Os12g0288000","exon","OsSTA278","Similar to cDNA clone:J023146F15, full insert sequence && - && -"]
[12,10999449,10999642,194,39,8.62435403628466E-3,0.134822390991866,-0.126198036955582,-255.160740884651,"CHH","Os12g0288000","intron","OsSTA278","Similar to cDNA clone:J023146F15, full insert sequence && - && -"]
[12,11396491,11396574,84,5,0.226103235809237,0.475817660790223,-0.249714424980986,-22.3529336904245,"CHG","12:11394923:11396923","CGI_shore"]
[12,11396491,11396574,84,5,0.226103235809237,0.475817660790223,-0.249714424980986,-22.3529336904245,"CHG","12:11396308:11398308","CGI_shore"]
[12,11396491,11396574,84,5,0.226103235809237,0.475817660790223,-0.249714424980986,-22.3529336904245,"CHG","12:11396313:11396549","CGI"]
[12,11396491,11396574,84,5,0.226103235809237,0.475817660790223,-0.249714424980986,-22.3529336904245,"CHG","12:11396549:11398550","CGI_shore"]
[12,11960580,11960718,139,25,0.360869842942271,0.683503459694444,-0.322633616752173,-121.735073463195,"CHG","12:11958958:11960959","CGI_shore"]
[12,11960580,11960718,139,25,0.360869842942271,0.683503459694444,-0.322633616752173,-121.735073463195,"CHG","12:11960012:11962012","CGI_shore"]
[12,11960580,11960718,139,25,0.360869842942271,0.683503459694444,-0.322633616752173,-121.735073463195,"CHG","12:11960255:11960962","CGI"]
[12,13442825,13443375,551,83,0.353105703571155,0.640194615928852,-0.287088912357697,-566.857239490381,"CG","12:13441366:13443367","CGI_shore"]
[12,13442825,13443375,551,83,0.353105703571155,0.640194615928852,-0.287088912357697,-566.857239490381,"CG","Os12g0424700","promoter","CDKF-2","Serine/threonine protein kinase domain containing protein && sp|Q2QSL4|CDKF2_ORYSJ Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 && PF00069:Protein kinase domain"]
[12,13442825,13443375,551,83,0.353105703571155,0.640194615928852,-0.287088912357697,-566.857239490381,"CG","12:13442173:13456138","CGI"]
[12,13443240,13443307,68,6,0.0867043436242202,0.357117859092967,-0.270413515468747,-28.3035568283132,"CHG","12:13441366:13443367","CGI_shore"]
[12,13443240,13443307,68,6,0.0867043436242202,0.357117859092967,-0.270413515468747,-28.3035568283132,"CHG","Os12g0424700","promoter","CDKF-2","Serine/threonine protein kinase domain containing protein && sp|Q2QSL4|CDKF2_ORYSJ Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 && PF00069:Protein kinase domain"]
[12,13443240,13443307,68,6,0.0867043436242202,0.357117859092967,-0.270413515468747,-28.3035568283132,"CHG","12:13442173:13456138","CGI"]
[12,13461170,13461278,109,15,0.609041535274323,0.872647490238702,-0.263605954964379,-60.3819289037042,"CG","12:13461169:13462650","CGI"]
[12,13461387,13461470,84,11,0.173586412029905,0.428009244580563,-0.254422832550658,-49.6928883496982,"CHG","12:13461169:13462650","CGI"]
[12,13469066,13469228,163,36,0.0361699318617691,0.124858260504892,-0.0886883286431231,-169.079888620858,"CHH","12:13467943:13469944","CGI_shore"]
[12,13601334,13601474,141,32,0.0621838954405371,0.207209982232883,-0.145026086792346,-181.847474947231,"CG","Os12g0427100","promoter","Os12g0427100","Similar to Protein kinase domain containing protein, expressed && sp|Q2QSL4|CDKF2_ORYSJ Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 && PF00069:Protein kinase domain"]
[12,13601334,13601474,141,32,0.0621838954405371,0.207209982232883,-0.145026086792346,-181.847474947231,"CG","Os12g0427000","promoter","Os12g0427000","Protein kinase, catalytic domain domain containing protein && sp|Q2QSL4|CDKF2_ORYSJ Putative cyclin-dependent kinase F-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKF-2 PE=3 SV=1 && PF00069:Protein kinase domain"]
[12,13601334,13601474,141,32,0.0621838954405371,0.207209982232883,-0.145026086792346,-181.847474947231,"CG","12:13596412:13605201","CGI"]
[12,13618133,13618191,59,18,0.108648830885221,0.24346847787478,-0.134819646989559,-85.656619387424,"CHH","12:13617861:13619861","CGI_shore"]
[12,13618952,13619020,69,19,0.556544757405017,0.842335338457672,-0.285790581052655,-92.2131823827316,"CG","12:13617861:13619861","CGI_shore"]
[12,13746204,13746345,142,52,0.121375743410776,0.253188130779786,-0.13181238736901,-249.196229638239,"CHH","12:13746153:13748660","CGI"]
[12,13759807,13759974,168,42,0.0849711039003659,0.205763000938378,-0.120791897038012,-209.734707153366,"CHH","12:13759663:13761664","CGI_shore"]
[12,14025619,14025695,77,24,0.053579466298403,0.120493583239206,-0.066914116940803,-109.902870401694,"CHH","12:14024811:14026811","CGI_shore"]
[12,14025619,14025695,77,24,0.053579466298403,0.120493583239206,-0.066914116940803,-109.902870401694,"CHH","12:14024956:14026957","CGI_shore"]
[12,14213186,14213243,58,23,0.554675193769134,0.837271654366906,-0.282596460597772,-110.302296167632,"CG","12:14211864:14216346","CGI"]
[12,14215448,14216074,627,112,0.620673705802393,0.872779696550698,-0.252105990748305,-894.388674491154,"CG","12:14211864:14216346","CGI"]
[12,14413445,14413551,107,33,0.601828450614694,0.849676667317032,-0.247848216702338,-142.476187020951,"CG","12:14411553:14413975","CGI"]
[12,14413445,14413551,107,33,0.601828450614694,0.849676667317032,-0.247848216702338,-142.476187020951,"CG","Os12g0437800","promoter","Sci1, PR6","Similar to MPI && sp|P01053|ICI2_HORVU Subtilisin-chymotrypsin inhibitor-2A OS=Hordeum vulgare OX=4513 PE=1 SV=2 && -"]
[12,14710682,14710737,56,7,0.0737608998584071,0.311664715669519,-0.237903815811112,-30.2773850580901,"CHG","12:14710225:14712226","CGI_shore"]
[12,14758881,14758949,69,11,0.513542927715228,0.708628944050727,-0.195086016335499,-42.3333003670352,"CHG","Os12g0441700","promoter","Os12g0441700","Conserved hypothetical protein && - && -"]
[12,14758881,14758949,69,11,0.513542927715228,0.708628944050727,-0.195086016335499,-42.3333003670352,"CHG","12:14758207:14760208","CGI_shore"]
[12,14758881,14758949,69,11,0.513542927715228,0.708628944050727,-0.195086016335499,-42.3333003670352,"CHG","12:14758776:14760776","CGI_shore"]
[12,15475273,15475341,69,7,0.123724645096424,0.439713909107569,-0.315989264011145,-32.6451994546955,"CHG","Os12g0450500","exon","Os12g0450500","Hypothetical conserved gene && - && -"]
[12,15475273,15475341,69,7,0.123724645096424,0.439713909107569,-0.315989264011145,-32.6451994546955,"CHG","Os12g0450500","utr5","Os12g0450500","Hypothetical conserved gene && - && -"]
[12,15475273,15475341,69,7,0.123724645096424,0.439713909107569,-0.315989264011145,-32.6451994546955,"CHG","12:15475089:15475570","CGI"]
[12,15781515,15781617,103,5,0.152192754759043,0.676116074302034,-0.523923319542991,-26.9932771254891,"CHG","12:15781065:15782334","CGI"]
[12,15781515,15781617,103,5,0.152192754759043,0.676116074302034,-0.523923319542991,-26.9932771254891,"CHG","12:15781549:15783549","CGI_shore"]
[12,16020038,16020186,149,33,0.206269986783923,0.474479579252891,-0.268209592468968,-153.915574999565,"CHG","12:16019690:16020191","CGI"]
[12,16721485,16721540,56,9,0.497622912137796,0.781520971297879,-0.283898059160083,-33.0633109345309,"CHG","12:16720837:16722838","CGI_shore"]
[12,17270803,17270866,64,17,0.142795345222793,0.306512686455981,-0.163717341233188,-73.8088567709833,"CHG","12:17270331:17272331","CGI_shore"]
[12,17270803,17270866,64,17,0.142795345222793,0.306512686455981,-0.163717341233188,-73.8088567709833,"CHG","12:17270636:17271326","CGI"]
[12,17303830,17304027,198,37,0.240547167382839,0.463314823198997,-0.222767655816159,-187.844952284999,"CG","12:17302633:17304032","CGI"]
[12,17303830,17304027,198,37,0.240547167382839,0.463314823198997,-0.222767655816159,-187.844952284999,"CG","Os12g0476200","exon","SWEET13","Sucrose transporter, TAL effector PthXo2-dependent disease susceptibility to bacterial pathoge && sp|Q2QR07|SWT13_ORYSJ Bidirectional sugar transporter SWEET13 OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET13 PE=2 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[12,17303830,17304027,198,37,0.240547167382839,0.463314823198997,-0.222767655816159,-187.844952284999,"CG","Os12g0476200","intron","SWEET13","Sucrose transporter, TAL effector PthXo2-dependent disease susceptibility to bacterial pathoge && sp|Q2QR07|SWT13_ORYSJ Bidirectional sugar transporter SWEET13 OS=Oryza sativa subsp. japonica OX=39947 GN=SWEET13 PE=2 SV=1 && PF03083:Sugar efflux transporter for intercellular exchange"]
[12,17401255,17401385,131,35,0.096437072934905,0.230134169826996,-0.133697096892091,-171.280839999361,"CG","12:17401015:17403875","CGI"]
[12,17543638,17543717,80,15,0.510271171927327,0.831267722401558,-0.320996550474231,-86.7630414225869,"CG","12:17542123:17544123","CGI_shore"]
[12,17791696,17791771,76,11,0.178286954493116,0.512579236367336,-0.33429228187422,-54.9294331418371,"CHG","12:17790534:17792178","CGI"]
[12,17791696,17791771,76,11,0.178286954493116,0.512579236367336,-0.33429228187422,-54.9294331418371,"CHG","Os12g0482700","promoter","Os12g0482700","Similar to L-galactose dehydrogenase && sp|O81884|GALDH_ARATH L-galactose dehydrogenase OS=Arabidopsis thaliana OX=3702 GN=LGALDH PE=1 SV=1 && PF00248:Aldo/keto reductase family"]
[12,17935227,17935314,88,13,0.11025360688691,0.286203592024815,-0.175949985137905,-66.480532695847,"CG","12:17931356:17936593","CGI"]
[12,18497284,18497423,140,50,0.591340334759523,0.839762000904334,-0.248421666144811,-255.508153601466,"CG","12:18496911:18498423","CGI"]
[12,18981292,18981482,191,59,0.0719045201107048,0.174680035487194,-0.102775515376489,-330.670498345048,"CG","12:18980900:18982576","CGI"]
[12,18981356,18981422,67,9,0.0214664294575394,0.103134487374416,-0.0816680579168764,-41.4589936990955,"CHG","12:18980900:18982576","CGI"]
[12,19366260,19366336,77,9,0.48905225543916,0.693095506619423,-0.204043251180262,-38.5524528236329,"CHG","12:19366144:19368144","CGI_shore"]
[12,19408567,19408730,164,19,0.138575305821174,0.463209715876577,-0.324634410055402,-118.437752586299,"CHG","12:19406780:19408780","CGI_shore"]
[12,19408567,19408730,164,19,0.138575305821174,0.463209715876577,-0.324634410055402,-118.437752586299,"CHG","12:19406811:19408812","CGI_shore"]
[12,19408567,19408730,164,19,0.138575305821174,0.463209715876577,-0.324634410055402,-118.437752586299,"CHG","12:19408157:19410158","CGI_shore"]
[12,19408567,19408730,164,19,0.138575305821174,0.463209715876577,-0.324634410055402,-118.437752586299,"CHG","12:19408190:19410190","CGI_shore"]
[12,19445051,19445116,66,9,0.24802252290803,0.555062941087215,-0.307040418179185,-41.7829002067753,"CHG","12:19444248:19446248","CGI_shore"]
[12,19445051,19445116,66,9,0.24802252290803,0.555062941087215,-0.307040418179185,-41.7829002067753,"CHG","12:19444618:19445582","CGI"]
[12,20044690,20044786,97,17,0.689654590380666,0.86520556436619,-0.175550973985524,-81.9586745112361,"CG","Os12g0516000","promoter","Os12g0516000","Conserved hypothetical protein && - && -"]
[12,20044690,20044786,97,17,0.689654590380666,0.86520556436619,-0.175550973985524,-81.9586745112361,"CG","12:20044681:20044972","CGI"]
[12,20191498,20191571,74,5,0.131438747104337,0.449365231162818,-0.317926484058482,-20.8230861925663,"CHG","12:20191120:20193121","CGI_shore"]
[12,20759321,20759473,153,32,0.181034167619562,0.378048417120294,-0.197014249500732,-133.17847971716,"CHG","12:20759049:20761633","CGI"]
[12,20759336,20759634,299,89,0.423723246089419,0.748311924013168,-0.324588677923748,-631.193986137796,"CG","12:20759049:20761633","CGI"]
[12,20768614,20768679,66,23,0.580613989355978,0.790312858648003,-0.209698869292025,-91.5733663449177,"CG","12:20767397:20768768","CGI"]
[12,20768614,20768679,66,23,0.580613989355978,0.790312858648003,-0.209698869292025,-91.5733663449177,"CG","12:20768316:20770316","CGI_shore"]
[12,21515295,21515358,64,22,0.0386062109695846,0.235296053240543,-0.196689842270958,-133.439909601661,"CHH","12:21514663:21516663","CGI_shore"]
[12,21776345,21776423,79,21,0.0853646102097586,0.188675133211215,-0.103310523001456,-85.5053508647783,"CG","12:21775390:21777168","CGI"]
[12,21832678,21832738,61,22,0.00745486088946106,0.0992741370158667,-0.0918192761264056,-91.8352098630373,"CHH","12:21830822:21832822","CGI_shore"]
[12,21869806,21870130,325,127,0.153447491531172,0.293965326560593,-0.140517835029421,-718.805022262164,"CG","12:21869651:21871422","CGI"]
[12,21869806,21870130,325,127,0.153447491531172,0.293965326560593,-0.140517835029421,-718.805022262164,"CG","Os12g0543600","exon","Os12g0543600","Similar to sarcosine oxidase && sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana OX=3702 GN=At2g24580 PE=2 SV=1 && PF01266:FAD dependent oxidoreductase"]
[12,21869806,21870130,325,127,0.153447491531172,0.293965326560593,-0.140517835029421,-718.805022262164,"CG","Os12g0543650","utr3","Os12g0543650","Hypothetical gene && sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana OX=3702 GN=At2g24580 PE=2 SV=1 && PF01266:FAD dependent oxidoreductase"]
[12,21869806,21870130,325,127,0.153447491531172,0.293965326560593,-0.140517835029421,-718.805022262164,"CG","Os12g0543650","exon","Os12g0543650","Hypothetical gene && sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana OX=3702 GN=At2g24580 PE=2 SV=1 && PF01266:FAD dependent oxidoreductase"]
[12,21869883,21870047,165,27,0.0215948958265863,0.114716945144327,-0.0931220493177404,-121.55822874069,"CHG","12:21869651:21871422","CGI"]
[12,21869883,21870047,165,27,0.0215948958265863,0.114716945144327,-0.0931220493177404,-121.55822874069,"CHG","Os12g0543600","exon","Os12g0543600","Similar to sarcosine oxidase && sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana OX=3702 GN=At2g24580 PE=2 SV=1 && PF01266:FAD dependent oxidoreductase"]
[12,21869883,21870047,165,27,0.0215948958265863,0.114716945144327,-0.0931220493177404,-121.55822874069,"CHG","Os12g0543650","utr3","Os12g0543650","Hypothetical gene && sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana OX=3702 GN=At2g24580 PE=2 SV=1 && PF01266:FAD dependent oxidoreductase"]
[12,21869883,21870047,165,27,0.0215948958265863,0.114716945144327,-0.0931220493177404,-121.55822874069,"CHG","Os12g0543650","exon","Os12g0543650","Hypothetical gene && sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana OX=3702 GN=At2g24580 PE=2 SV=1 && PF01266:FAD dependent oxidoreductase"]
[12,22048996,22049049,54,15,0.772622879315487,0.85524539354225,-0.0826225142267627,-64.7244581991055,"CG","12:22047640:22049519","CGI"]
[12,22048996,22049049,54,15,0.772622879315487,0.85524539354225,-0.0826225142267627,-64.7244581991055,"CG","Os12g0545900","intron","PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 3","Conserved hypothetical protein && - && -"]
[12,22448244,22448416,173,63,0.204330582550515,0.359229866390069,-0.154899283839554,-341.839680805279,"CG","Os12g0552600","exon","Os12g0552600","Similar to MATE efflux family protein && sp|Q9FH21|DTX55_ARATH Protein DETOXIFICATION 55 OS=Arabidopsis thaliana OX=3702 GN=DTX55 PE=2 SV=1 && PF01554:MatE"]
[12,22448244,22448416,173,63,0.204330582550515,0.359229866390069,-0.154899283839554,-341.839680805279,"CG","12:22447797:22448971","CGI"]
[12,22448244,22448416,173,63,0.204330582550515,0.359229866390069,-0.154899283839554,-341.839680805279,"CG","Os12g0552575","utr3","Os12g0552575","Hypothetical protein && sp|Q9FH21|DTX55_ARATH Protein DETOXIFICATION 55 OS=Arabidopsis thaliana OX=3702 GN=DTX55 PE=2 SV=1 && PF01554:MatE"]
[12,22448244,22448416,173,63,0.204330582550515,0.359229866390069,-0.154899283839554,-341.839680805279,"CG","Os12g0552575","exon","Os12g0552575","Hypothetical protein && sp|Q9FH21|DTX55_ARATH Protein DETOXIFICATION 55 OS=Arabidopsis thaliana OX=3702 GN=DTX55 PE=2 SV=1 && PF01554:MatE"]
[12,22627243,22627296,54,15,0.720422165265315,0.859518531442005,-0.139096366176691,-56.9764566823734,"CG","12:22626774:22628774","CGI_shore"]
[12,22627243,22627296,54,15,0.720422165265315,0.859518531442005,-0.139096366176691,-56.9764566823734,"CG","12:22626844:22627535","CGI"]
[12,22627243,22627296,54,15,0.720422165265315,0.859518531442005,-0.139096366176691,-56.9764566823734,"CG","Os12g0556200","promoter","Os12g0556200","Calmodulin binding protein-like family protein && sp|Q9FKL6|CB60B_ARATH Calmodulin-binding protein 60 B OS=Arabidopsis thaliana OX=3702 GN=CBP60B PE=2 SV=1 && PF07887:Calmodulin binding protein-like"]
[12,22962007,22962106,100,15,0.0765107889950123,0.260412765198448,-0.183901976203436,-92.7042788830406,"CHH","12:22962001:22964001","CGI_shore"]
[12,23531808,23531935,128,26,0.0745600356643098,0.223264744585185,-0.148704708920876,-134.757643148655,"CHH","12:23530564:23532564","CGI_shore"]
[12,23531808,23531935,128,26,0.0745600356643098,0.223264744585185,-0.148704708920876,-134.757643148655,"CHH","Os12g0571700","promoter","RAPID ALKALIZATION FACTOR 42","Conserved hypothetical protein && - && -"]
[12,23531808,23531935,128,26,0.0745600356643098,0.223264744585185,-0.148704708920876,-134.757643148655,"CHH","12:23530828:23532829","CGI_shore"]
[12,23794538,23794637,100,29,0.0181997957865805,0.0514450143082197,-0.0332452185216392,-135.786540637175,"CHH","Os12g0576300","exon","Os12g0576300","Conserved hypothetical protein && - && -"]
[12,23983910,23984032,123,30,0.724912279515474,0.898650470325871,-0.173738190810398,-132.883621540244,"CG","12:23983182:23985182","CGI_shore"]
[12,23983910,23984032,123,30,0.724912279515474,0.898650470325871,-0.173738190810398,-132.883621540244,"CG","Os12g0579450","utr3","Os12g0579450","Hypothetical gene && - && -"]
[12,23983910,23984032,123,30,0.724912279515474,0.898650470325871,-0.173738190810398,-132.883621540244,"CG","Os12g0579450","exon","Os12g0579450","Hypothetical gene && - && -"]
[12,23983910,23984032,123,30,0.724912279515474,0.898650470325871,-0.173738190810398,-132.883621540244,"CG","12:23983800:23984151","CGI"]
[12,23985296,23985560,265,94,0.545250758581634,0.854299666790947,-0.309048908209313,-629.463674299081,"CG","12:23984151:23986152","CGI_shore"]
[12,23985296,23985560,265,94,0.545250758581634,0.854299666790947,-0.309048908209313,-629.463674299081,"CG","Os12g0579450","intron","Os12g0579450","Hypothetical gene && - && -"]
[12,23985296,23985560,265,94,0.545250758581634,0.854299666790947,-0.309048908209313,-629.463674299081,"CG","12:23985183:23986629","CGI"]
[12,23985378,23985455,78,11,0.18321214201006,0.491959691082953,-0.308747549072893,-51.9626712681801,"CHG","12:23984151:23986152","CGI_shore"]
[12,23985378,23985455,78,11,0.18321214201006,0.491959691082953,-0.308747549072893,-51.9626712681801,"CHG","Os12g0579450","intron","Os12g0579450","Hypothetical gene && - && -"]
[12,23985378,23985455,78,11,0.18321214201006,0.491959691082953,-0.308747549072893,-51.9626712681801,"CHG","12:23985183:23986629","CGI"]
[12,24063617,24063794,178,19,0.467904469581306,0.743962773244779,-0.276058303663472,-118.723598959325,"CG","12:24062026:24064026","CGI_shore"]
[12,24063617,24063794,178,19,0.467904469581306,0.743962773244779,-0.276058303663472,-118.723598959325,"CG","12:24062599:24064600","CGI_shore"]
[12,24063617,24063794,178,19,0.467904469581306,0.743962773244779,-0.276058303663472,-118.723598959325,"CG","Os12g0580700","exon","RING finger protein OsRFPH2-18, RING-H2 protein 18","Similar to RING-H2 finger protein ATL2N && sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 && PF13639:Ring finger domain"]
[12,24063617,24063794,178,19,0.467904469581306,0.743962773244779,-0.276058303663472,-118.723598959325,"CG","Os12g0580700","intron","RING finger protein OsRFPH2-18, RING-H2 protein 18","Similar to RING-H2 finger protein ATL2N && sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 && PF13639:Ring finger domain"]
[12,24063878,24063984,107,12,0.477216375822886,0.712385695133941,-0.235169319311055,-60.5627780360877,"CG","12:24062026:24064026","CGI_shore"]
[12,24063878,24063984,107,12,0.477216375822886,0.712385695133941,-0.235169319311055,-60.5627780360877,"CG","12:24062599:24064600","CGI_shore"]
[12,24063878,24063984,107,12,0.477216375822886,0.712385695133941,-0.235169319311055,-60.5627780360877,"CG","Os12g0580700","exon","RING finger protein OsRFPH2-18, RING-H2 protein 18","Similar to RING-H2 finger protein ATL2N && sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 && PF13639:Ring finger domain"]
[12,24063878,24063984,107,12,0.477216375822886,0.712385695133941,-0.235169319311055,-60.5627780360877,"CG","12:24063927:24065927","CGI_shore"]
[12,24064042,24064269,228,33,0.551892505082508,0.734441350729762,-0.182548845647254,-158.67738112875,"CG","12:24062599:24064600","CGI_shore"]
[12,24064042,24064269,228,33,0.551892505082508,0.734441350729762,-0.182548845647254,-158.67738112875,"CG","Os12g0580700","exon","RING finger protein OsRFPH2-18, RING-H2 protein 18","Similar to RING-H2 finger protein ATL2N && sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 && PF13639:Ring finger domain"]
[12,24064042,24064269,228,33,0.551892505082508,0.734441350729762,-0.182548845647254,-158.67738112875,"CG","12:24063927:24065927","CGI_shore"]
[12,24064042,24064269,228,33,0.551892505082508,0.734441350729762,-0.182548845647254,-158.67738112875,"CG","12:24064027:24064245","CGI"]
[12,24064042,24064269,228,33,0.551892505082508,0.734441350729762,-0.182548845647254,-158.67738112875,"CG","12:24064245:24066246","CGI_shore"]
[12,24388206,24388282,77,26,0.00926040601487425,0.0516670060500917,-0.0424066000352174,-120.201329214039,"CHH","12:24387880:24389880","CGI_shore"]
[12,25258198,25258464,267,47,0.0881692520140378,0.314787320322366,-0.226618068308329,-330.458780898021,"CG","12:25257290:25271981","CGI"]
[12,25258272,25258417,146,24,0.0336211892979379,0.224616084476003,-0.190994895178065,-143.639110464048,"CHG","12:25257290:25271981","CGI"]
[12,25642707,25642777,71,6,0.221041391808105,0.533330649950464,-0.312289258142359,-27.4850229227428,"CG","Os12g0607000","intron","Os12g0607000","Similar to homocysteine S-methyltransferase-2 && sp|Q9FUM9|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays OX=4577 GN=HMT-2 PE=2 SV=1 && PF02574:Homocysteine S-methyltransferase"]
[12,25642707,25642777,71,6,0.221041391808105,0.533330649950464,-0.312289258142359,-27.4850229227428,"CG","12:25642371:25644372","CGI_shore"]
[12,25728684,25728780,97,32,0.166489851203401,0.258181087277621,-0.0916912360742198,-153.202020172314,"CG","Os12g0609100","promoter","Os12g0609100","Conserved hypothetical protein && - && -"]
[12,25728684,25728780,97,32,0.166489851203401,0.258181087277621,-0.0916912360742198,-153.202020172314,"CG","Os12g0609200","exon","Os12g0609200","Conserved hypothetical protein && sp|A2YVF1|TIF6A_ORYSI Protein TIFY 6a OS=Oryza sativa subsp. indica OX=39946 GN=TIFY6A PE=3 SV=1 && -"]
[12,26204913,26205094,182,31,0.253022460180678,0.622419931350937,-0.369397471170259,-170.103752750998,"CHG","12:26204521:26205096","CGI"]
[12,26204913,26205094,182,31,0.253022460180678,0.622419931350937,-0.369397471170259,-170.103752750998,"CHG","12:26204617:26206617","CGI_shore"]
[12,26391921,26392192,272,52,0.138390316020655,0.633019349063042,-0.494629033042388,-361.411794003467,"CG","12:26391284:26392798","CGI"]
[12,26391921,26392192,272,52,0.138390316020655,0.633019349063042,-0.494629033042388,-361.411794003467,"CG","12:26391846:26393846","CGI_shore"]
[12,26391921,26392192,272,52,0.138390316020655,0.633019349063042,-0.494629033042388,-361.411794003467,"CG","Os12g0619700","intron","Os12g0619700","Conserved hypothetical protein && - && -"]
[12,26391966,26392069,104,20,0.0498523212493433,0.451266746479908,-0.401414425230565,-117.46213954255,"CHG","12:26391284:26392798","CGI"]
[12,26391966,26392069,104,20,0.0498523212493433,0.451266746479908,-0.401414425230565,-117.46213954255,"CHG","12:26391846:26393846","CGI_shore"]
[12,26391966,26392069,104,20,0.0498523212493433,0.451266746479908,-0.401414425230565,-117.46213954255,"CHG","Os12g0619700","intron","Os12g0619700","Conserved hypothetical protein && - && -"]
[12,26449255,26449457,203,57,0.316364847740527,0.491767196271745,-0.175402348531219,-299.877044814219,"CG","12:26448623:26449589","CGI"]
[12,26449255,26449457,203,57,0.316364847740527,0.491767196271745,-0.175402348531219,-299.877044814219,"CG","12:26448791:26450791","CGI_shore"]
[12,26460814,26460885,72,5,0.635211054436439,0.834111878394028,-0.198900823957589,-22.5657909909142,"CG","Os12g0621025","exon","Os12g0621025","Hypothetical protein && sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 && -"]
[12,26460814,26460885,72,5,0.635211054436439,0.834111878394028,-0.198900823957589,-22.5657909909142,"CG","Os12g0621025","utr5","Os12g0621025","Hypothetical protein && sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 && -"]
[12,26460814,26460885,72,5,0.635211054436439,0.834111878394028,-0.198900823957589,-22.5657909909142,"CG","Os12g0621000","exon","Os12g0621000","Similar to Ubiquitin carboxyl-terminal hydrolase && sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 && -"]
[12,26460814,26460885,72,5,0.635211054436439,0.834111878394028,-0.198900823957589,-22.5657909909142,"CG","Os12g0621000","utr3","Os12g0621000","Similar to Ubiquitin carboxyl-terminal hydrolase && sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 && -"]
[12,26943040,26943147,108,14,0.217961988244279,0.704854000289979,-0.4868920120457,-71.396739051848,"CHG","12:26941445:26943446","CGI_shore"]
[12,27005655,27005786,132,47,0.0941327248754229,0.16020128842559,-0.066068563550167,-209.488766724735,"CHH","Os12g0630750","promoter","Os12g0630750","Similar to cDNA clone:J023055K12, full insert sequence && sp|A2YH60|CCB22_ORYSI Cyclin-B2-2 OS=Oryza sativa subsp. indica OX=39946 GN=CYCB2-2 PE=1 SV=2 && -"]
[12,27005655,27005786,132,47,0.0941327248754229,0.16020128842559,-0.066068563550167,-209.488766724735,"CHH","12:27005374:27007375","CGI_shore"]
[12,27005655,27005786,132,47,0.0941327248754229,0.16020128842559,-0.066068563550167,-209.488766724735,"CHH","12:27005697:27007697","CGI_shore"]
[12,27071983,27072130,148,24,0.215728861063673,0.470887398726236,-0.255158537662564,-122.681194074031,"CHG","12:27071554:27074452","CGI"]
[12,27071983,27072130,148,24,0.215728861063673,0.470887398726236,-0.255158537662564,-122.681194074031,"CHG","Os12g0632401","promoter","Os12g0632401","Hypothetical conserved gene && - && -"]
[12,27100655,27100711,57,13,0.635210832320133,0.781534721451778,-0.146323889131645,-56.986694164648,"CG","Os12g0632700","promoter","Os12g0632700","Malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) && sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0632700 PE=1 SV=3 && PF00056:lactate/malate dehydrogenase, NAD binding domain|PF02866:lactate/malate dehydrogenase, alpha/beta C-terminal domain"]
[12,27100655,27100711,57,13,0.635210832320133,0.781534721451778,-0.146323889131645,-56.986694164648,"CG","12:27099854:27100739","CGI"]
[12,27141300,27141511,212,69,0.118478104275271,0.178569761532494,-0.0600916572572234,-348.398036618031,"CG","12:27139705:27141706","CGI_shore"]
[12,27141300,27141511,212,69,0.118478104275271,0.178569761532494,-0.0600916572572234,-348.398036618031,"CG","12:27140241:27147762","CGI"]
[12,27144154,27144218,65,21,0.525324850850667,0.665621279187859,-0.140296428337192,-84.618127913467,"CG","12:27140241:27147762","CGI"]
[12,27161735,27161812,78,12,0.302560811200695,0.576952630565853,-0.274391819365158,-62.8579840020764,"CG","12:27160247:27162248","CGI_shore"]
[12,27161735,27161812,78,12,0.302560811200695,0.576952630565853,-0.274391819365158,-62.8579840020764,"CG","Os12g0633600","promoter","HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.1","Protein of unknown function DUF221 domain containing protein && sp|F4IBD7|CSCLA_ARATH CSC1-like protein RXW8 OS=Arabidopsis thaliana OX=3702 GN=RXW8 PE=2 SV=1 && PF02714:Calcium-dependent channel, 7TM region, putative phosphate|PF14703:Cytosolic domain of 10TM putative phosphate transporter|PF13967:Late exocytosis, associated with Golgi transport"]
[12,27161735,27161812,78,12,0.302560811200695,0.576952630565853,-0.274391819365158,-62.8579840020764,"CG","12:27160431:27162431","CGI_shore"]
[12,27197375,27197446,72,29,0.13662288747691,0.288472878768739,-0.151849991291829,-113.679993950662,"CG","12:27197253:27197826","CGI"]
[12,27197375,27197446,72,29,0.13662288747691,0.288472878768739,-0.151849991291829,-113.679993950662,"CG","Os12g0634500","exon","b-ZIP TRANSCRIPTION FACTOR 89","bZIP transcription factor, bZIP-1 domain containing protein && - && PF00170:bZIP transcription factor"]
[12,27431517,27431626,110,12,0.46278540259233,0.716002244152216,-0.253216841559885,-60.966282866714,"CG","Os12g0639600","exon","Os12g0639600","Similar to Hedgehog-interacting-like protein && sp|Q9SSG3|HIPL1_ARATH HIPL1 protein OS=Arabidopsis thaliana OX=3702 GN=HIPL1 PE=3 SV=2 && -"]
[12,27431517,27431626,110,12,0.46278540259233,0.716002244152216,-0.253216841559885,-60.966282866714,"CG","12:27430748:27432749","CGI_shore"]
[12,27431517,27431626,110,12,0.46278540259233,0.716002244152216,-0.253216841559885,-60.966282866714,"CG","Os12g0639600","utr3","Os12g0639600","Similar to Hedgehog-interacting-like protein && sp|Q9SSG3|HIPL1_ARATH HIPL1 protein OS=Arabidopsis thaliana OX=3702 GN=HIPL1 PE=3 SV=2 && -"]
[2,425152,425301,150,45,0.0968732095327331,0.284801655750954,-0.187928446218221,-345.822534635467,"CG","Os02g0107300","utr5","Os02g0107300","Conserved hypothetical protein && - && -"]
[2,425152,425301,150,45,0.0968732095327331,0.284801655750954,-0.187928446218221,-345.822534635467,"CG","Os02g0107350","promoter","Os02g0107350","Conserved hypothetical protein && - && -"]
[2,425152,425301,150,45,0.0968732095327331,0.284801655750954,-0.187928446218221,-345.822534635467,"CG","2:424534:426534","CGI_shore"]
[2,425152,425301,150,45,0.0968732095327331,0.284801655750954,-0.187928446218221,-345.822534635467,"CG","Os02g0107251","exon","Os02g0107251","Conserved hypothetical protein && - && -"]
[2,425152,425301,150,45,0.0968732095327331,0.284801655750954,-0.187928446218221,-345.822534635467,"CG","Os02g0107300","exon","Os02g0107300","Conserved hypothetical protein && - && -"]
[2,425152,425301,150,45,0.0968732095327331,0.284801655750954,-0.187928446218221,-345.822534635467,"CG","2:425151:426154","CGI"]
[2,459292,459491,200,62,0.235725759744959,0.371812065729248,-0.13608630598429,-316.211662594449,"CG","Os02g0108000","exon","Os02g0108000","Hypothetical protein && - && -"]
[2,459292,459491,200,62,0.235725759744959,0.371812065729248,-0.13608630598429,-316.211662594449,"CG","Os02g0108100","exon","Os02g0108100","Conserved hypothetical protein && - && -"]
[2,459292,459491,200,62,0.235725759744959,0.371812065729248,-0.13608630598429,-316.211662594449,"CG","2:458920:460555","CGI"]
[2,459292,459491,200,62,0.235725759744959,0.371812065729248,-0.13608630598429,-316.211662594449,"CG","Os02g0108000","utr5","Os02g0108000","Hypothetical protein && - && -"]
[2,459758,459946,189,66,0.334956262661945,0.48023333542445,-0.145277072762505,-340.103755613847,"CG","Os02g0108000","exon","Os02g0108000","Hypothetical protein && - && -"]
[2,459758,459946,189,66,0.334956262661945,0.48023333542445,-0.145277072762505,-340.103755613847,"CG","Os02g0108100","exon","Os02g0108100","Conserved hypothetical protein && - && -"]
[2,459758,459946,189,66,0.334956262661945,0.48023333542445,-0.145277072762505,-340.103755613847,"CG","2:458920:460555","CGI"]
[2,459758,459946,189,66,0.334956262661945,0.48023333542445,-0.145277072762505,-340.103755613847,"CG","Os02g0108000","utr5","Os02g0108000","Hypothetical protein && - && -"]
[2,591206,591282,77,23,0.0497952048218654,0.14403442156773,-0.0942392167458649,-107.072232742701,"CHH","2:590190:592191","CGI_shore"]
[2,607211,607333,123,28,0.41574573433645,0.767656097660799,-0.35191036332435,-156.228935832025,"CG","2:606432:608433","CGI_shore"]
[2,607211,607333,123,28,0.41574573433645,0.767656097660799,-0.35191036332435,-156.228935832025,"CG","2:607102:608186","CGI"]
[2,607211,607333,123,28,0.41574573433645,0.767656097660799,-0.35191036332435,-156.228935832025,"CG","Os02g0110900","intron","Os02g0110900","Hypothetical conserved gene && - && -"]
[2,607617,607780,164,22,0.389197334508289,0.71601876878387,-0.326821434275582,-120.993587183259,"CHG","2:606432:608433","CGI_shore"]
[2,607617,607780,164,22,0.389197334508289,0.71601876878387,-0.326821434275582,-120.993587183259,"CHG","2:607102:608186","CGI"]
[2,607617,607780,164,22,0.389197334508289,0.71601876878387,-0.326821434275582,-120.993587183259,"CHG","Os02g0110900","intron","Os02g0110900","Hypothetical conserved gene && - && -"]
[2,741150,741475,326,99,0.0526232615712753,0.113286635637263,-0.0606633740659876,-482.662921812698,"CG","2:739356:741357","CGI_shore"]
[2,741150,741475,326,99,0.0526232615712753,0.113286635637263,-0.0606633740659876,-482.662921812698,"CG","2:741107:747064","CGI"]
[2,741150,741475,326,99,0.0526232615712753,0.113286635637263,-0.0606633740659876,-482.662921812698,"CG","Os02g0113800","promoter","Os02g0113800","Domain of unknown function DUF1618 domain containing protein && - && PF07762:Protein of unknown function (DUF1618)"]
[2,874301,874351,51,7,0.0563918393428357,0.270344458948845,-0.213952619606009,-33.4386234598469,"CHG","2:872313:874313","CGI_shore"]
[2,874301,874351,51,7,0.0563918393428357,0.270344458948845,-0.213952619606009,-33.4386234598469,"CHG","Os02g0116500","intron","Os02g0116500","Similar to Protochlorophyllide reductase homologue && sp|F4JJR8|FEY_ARATH Dehydrogenase/reductase SDR family member FEY OS=Arabidopsis thaliana OX=3702 GN=FEY PE=1 SV=1 && PF00106:short chain dehydrogenase"]
[2,874301,874351,51,7,0.0563918393428357,0.270344458948845,-0.213952619606009,-33.4386234598469,"CHG","2:874314:874943","CGI"]
[2,1576267,1576393,127,11,0.454847883570916,0.705353665645995,-0.250505782075079,-56.9649948824854,"CG","2:1574653:1576654","CGI_shore"]
[2,1576267,1576393,127,11,0.454847883570916,0.705353665645995,-0.250505782075079,-56.9649948824854,"CG","Os02g0130200","promoter","Os02g0130200","Pectin lyase fold/virulence factor domain containing protein && sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1 && PF00295:Glycosyl hydrolases family 28"]
[2,1576267,1576393,127,11,0.454847883570916,0.705353665645995,-0.250505782075079,-56.9649948824854,"CG","Os02g0130300","exon","Os02g0130300","Hypothetical conserved gene && sp|Q9FHE4|BRG1_ARATH BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG1 PE=1 SV=1 && PF13920:Zinc finger, C3HC4 type (RING finger)"]
[2,1696024,1696356,333,115,0.0244679683073385,0.161233374169558,-0.136765405862219,-951.561718620835,"CG","Os02g0132500","exon","b-ZIP TRANSCRIPTION FACTOR 14","Similar to Common plant regulatory factor 7 && sp|C0Z2L5|BZP44_ARATH bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1 && PF00170:bZIP transcription factor"]
[2,1696024,1696356,333,115,0.0244679683073385,0.161233374169558,-0.136765405862219,-951.561718620835,"CG","2:1695942:1696797","CGI"]
[2,1815423,1815530,108,17,0.123450380195149,0.284553844081982,-0.161103463886833,-74.9140798499675,"CG","2:1815488:1817489","CGI_shore"]
[2,1815423,1815530,108,17,0.123450380195149,0.284553844081982,-0.161103463886833,-74.9140798499675,"CG","2:1799946:1815488","CGI"]
[2,1855477,1855542,66,6,0.118413797291136,0.499435791224169,-0.381021993933033,-31.5355144098745,"CG","Os02g0135200","intron","Mitogen-activated protein kinase13, BTH-Induced MAP Kinase 2, benzothiadiazole-induced MAP kinase 2","Similar to Mitogen-activated protein kinase 13 && sp|A2X0M1|MPK13_ORYSI Mitogen-activated protein kinase 13 OS=Oryza sativa subsp. indica OX=39946 GN=MPK13 PE=2 SV=2 && -"]
[2,2200234,2200396,163,16,0.00947202000803652,0.0958703023200948,-0.0863982823120583,-74.9314925068781,"CHH","2:2199399:2201399","CGI_shore"]
[2,2281364,2281429,66,18,0.444148839918447,0.786908507815016,-0.342759667896569,-79.3161394092484,"CG","2:2280557:2281391","CGI"]
[2,2281364,2281429,66,18,0.444148839918447,0.786908507815016,-0.342759667896569,-79.3161394092484,"CG","2:2281391:2283392","CGI_shore"]
[2,2347612,2347781,170,23,0.433169981882073,0.727787141083311,-0.294617159201238,-121.051833329527,"CHG","2:2345718:2347718","CGI_shore"]
[2,2347612,2347781,170,23,0.433169981882073,0.727787141083311,-0.294617159201238,-121.051833329527,"CHG","2:2346303:2348304","CGI_shore"]
[2,2347612,2347781,170,23,0.433169981882073,0.727787141083311,-0.294617159201238,-121.051833329527,"CHG","2:2347719:2348108","CGI"]
[2,2350002,2350060,59,15,0.0183493873459877,0.092350343348617,-0.0740009560026293,-69.8202402243321,"CHH","2:2348108:2350109","CGI_shore"]
[2,2350002,2350060,59,15,0.0183493873459877,0.092350343348617,-0.0740009560026293,-69.8202402243321,"CHH","2:2349351:2351351","CGI_shore"]
[2,2491531,2491624,94,14,0.128488245056027,0.517540857785518,-0.389052612729491,-67.4266088524974,"CHG","2:2491439:2493439","CGI_shore"]
[2,2491531,2491624,94,14,0.128488245056027,0.517540857785518,-0.389052612729491,-67.4266088524974,"CHG","2:2489856:2491857","CGI_shore"]
[2,2526615,2526719,105,21,0.592736794198571,0.788912114195182,-0.196175319996611,-109.85158930682,"CG","2:2520379:2534547","CGI"]
[2,2742807,2742945,139,47,0.246046687955534,0.390552429804397,-0.144505741848863,-234.180148893457,"CHH","2:2742131:2744131","CGI_shore"]
[2,2742807,2742945,139,47,0.246046687955534,0.390552429804397,-0.144505741848863,-234.180148893457,"CHH","Os02g0149800","promoter","protein phosphatase 2C10, protein phosphatase 2C 10, Protein Phosphatase18","Stress-responsive NAC1-regulated protein phosphatase, Drought and oxidative stress toleranc && sp|Q67UX7|P2C10_ORYSJ Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0149800 PE=2 SV=1 && PF00481:Protein phosphatase 2C"]
[2,2779864,2779954,91,37,0.111673273359679,0.360547261016904,-0.248873987657226,-266.550742493056,"CG","Os02g0150450","promoter","Os02g0150450","Similar to OSIGBa0125M19.6 protein && sp|Q7XUN6|SIT2_ORYSJ L-type lectin-domain containing receptor kinase SIT2 OS=Oryza sativa subsp. japonica OX=39947 GN=SIT2 PE=2 SV=2 && -"]
[2,2779864,2779954,91,37,0.111673273359679,0.360547261016904,-0.248873987657226,-266.550742493056,"CG","2:2779863:2782979","CGI"]
[2,2981766,2981905,140,9,0.558856402550923,0.772584337520374,-0.213727934969452,-40.6678801343029,"CG","Os02g0154100","intron","Os02g0154100","Antisense long noncoding RNA, Regulation of sense LRK gene cluster expression, Regulation of grain yiel && - && -"]
[2,2981766,2981905,140,9,0.558856402550923,0.772584337520374,-0.213727934969452,-40.6678801343029,"CG","Os02g0154200","exon","leucine-rich receptor-like kinase 1","Leucine-rich repeat receptor kinase, Regulation of grain yiel && sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana OX=3702 GN=PSY1R PE=1 SV=1 && PF00069:Protein kinase domain|PF08263:Leucine rich repeat N-terminal domain|PF13855:Leucine rich repeat"]
[2,2981766,2981905,140,9,0.558856402550923,0.772584337520374,-0.213727934969452,-40.6678801343029,"CG","Os02g0154300","utr5","Os02g0154300","Hypothetical protein && sp|Q9LH52|FLOR1_ARATH Leucine-rich repeat protein FLOR 1 OS=Arabidopsis thaliana OX=3702 GN=FLR1 PE=1 SV=1 && PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain"]
[2,2981766,2981905,140,9,0.558856402550923,0.772584337520374,-0.213727934969452,-40.6678801343029,"CG","Os02g0154300","exon","Os02g0154300","Hypothetical protein && sp|Q9LH52|FLOR1_ARATH Leucine-rich repeat protein FLOR 1 OS=Arabidopsis thaliana OX=3702 GN=FLR1 PE=1 SV=1 && PF13855:Leucine rich repeat|PF08263:Leucine rich repeat N-terminal domain"]
[2,3345318,3345376,59,9,0.256362313874595,0.419104142852667,-0.162741828978071,-38.9178039011591,"CG","2:3345098:3347098","CGI_shore"]
[2,3345318,3345376,59,9,0.256362313874595,0.419104142852667,-0.162741828978071,-38.9178039011591,"CG","Os02g0162000","exon","Os02g0162000","Cytochrome c oxidase, subunit VIIa domain containing protein && - && -"]
[2,3437460,3437533,74,15,0.475786699703795,0.735165216013907,-0.259378516310112,-63.808729586961,"CG","2:3434677:3439166","CGI"]
[2,3437498,3437602,105,16,0.403831839978153,0.631938501856814,-0.228106661878661,-70.4531630853727,"CHG","2:3434677:3439166","CGI"]
[2,3634572,3634709,138,37,0.558510390586429,0.789335188407933,-0.230824797821504,-184.966968930604,"CG","2:3634286:3635059","CGI"]
[2,3711507,3711611,105,13,0.292026229826552,0.749704776235797,-0.457678546409245,-72.9364076519999,"CG","Os02g0168600","promoter","OUT like cysteine protease 1","Ovarian tumour, otubain domain containing protein && sp|Q0V869|OTU11_ARATH OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 11 OS=Arabidopsis thaliana OX=3702 GN=OTU11 PE=2 SV=1 && PF02338:OTU-like cysteine protease"]
[2,3711507,3711611,105,13,0.292026229826552,0.749704776235797,-0.457678546409245,-72.9364076519999,"CG","2:3711104:3713104","CGI_shore"]
[2,3711507,3711611,105,13,0.292026229826552,0.749704776235797,-0.457678546409245,-72.9364076519999,"CG","Os02g0168700","exon","FK506 binding protein 17-1","Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein && sp|O81864|FK171_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP17-1 PE=2 SV=1 && PF00254:FKBP-type peptidyl-prolyl cis-trans isomerase"]
[2,3711507,3711611,105,13,0.292026229826552,0.749704776235797,-0.457678546409245,-72.9364076519999,"CG","Os02g0168700","intron","FK506 binding protein 17-1","Peptidyl-prolyl cis-trans isomerase, FKBP-type domain containing protein && sp|O81864|FK171_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP17-1 PE=2 SV=1 && PF00254:FKBP-type peptidyl-prolyl cis-trans isomerase"]
[2,3764455,3764625,171,32,0.549443354596665,0.816749219763627,-0.267305865166962,-135.630805786526,"CG","2:3762529:3764529","CGI_shore"]
[2,3764455,3764625,171,32,0.549443354596665,0.816749219763627,-0.267305865166962,-135.630805786526,"CG","2:3764530:3765987","CGI"]
[2,4029561,4029689,129,30,0.11600066072617,0.520620294215412,-0.404619633489242,-205.886710617372,"CG","2:4028269:4030269","CGI_shore"]
[2,4029561,4029689,129,30,0.11600066072617,0.520620294215412,-0.404619633489242,-205.886710617372,"CG","Os02g0173600","promoter","Os02g0173600","Similar to Dreg-2 like protein && - && -"]
[2,4827608,4827836,229,32,0.140769441075789,0.373398619114369,-0.23262917803858,-205.31933772015,"CG","2:4824235:4831745","CGI"]
[2,4827608,4827836,229,32,0.140769441075789,0.373398619114369,-0.23262917803858,-205.31933772015,"CG","Os02g0187000","promoter","Os02g0187000","Similar to Cytochrome P450 CYP71K14 && sp|A6YIH8|C7D55_HYOMU Premnaspirodiene oxygenase OS=Hyoscyamus muticus OX=35626 GN=CYP71D55 PE=1 SV=1 && PF00067:Cytochrome P450"]
[2,4827608,4827836,229,32,0.140769441075789,0.373398619114369,-0.23262917803858,-205.31933772015,"CG","Os02g0186900","exon","Os02g0186900","Cytochrome P450 family protein && sp|A3A871|C71Z6_ORYSJ Ent-isokaurene C2/C3-hydroxylase OS=Oryza sativa subsp. japonica OX=39947 GN=CYP71Z6 PE=1 SV=1 && PF00067:Cytochrome P450"]
[2,5332315,5332418,104,19,0.249210764380287,0.428836744838755,-0.179625980458468,-86.1606653029644,"CG","2:5331354:5333355","CGI_shore"]
[2,5332315,5332418,104,19,0.249210764380287,0.428836744838755,-0.179625980458468,-86.1606653029644,"CG","Os02g0195300","exon","DnaJ domain protein C16","Similar to dnaJ subfamily C member 7 && sp|A0A0P0VG31|DJC16_ORYSJ DnaJ protein P58IPK homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=P58A PE=1 SV=1 && PF00226:DnaJ domain"]
[2,5332315,5332418,104,19,0.249210764380287,0.428836744838755,-0.179625980458468,-86.1606653029644,"CG","Os02g0195300","intron","DnaJ domain protein C16","Similar to dnaJ subfamily C member 7 && sp|A0A0P0VG31|DJC16_ORYSJ DnaJ protein P58IPK homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=P58A PE=1 SV=1 && PF00226:DnaJ domain"]
[2,5340151,5340202,52,13,0.551719093052907,0.754770827688883,-0.203051734635975,-60.089946568985,"CG","Os02g0195500","promoter","Os02g0195500","Protein of unknown function DUF1680 family protein && - && PF07944:Beta-L-arabinofuranosidase, GH127"]
[2,5340151,5340202,52,13,0.551719093052907,0.754770827688883,-0.203051734635975,-60.089946568985,"CG","2:5338803:5340267","CGI"]
[2,5340151,5340202,52,13,0.551719093052907,0.754770827688883,-0.203051734635975,-60.089946568985,"CG","Os02g0195500","exon","Os02g0195500","Protein of unknown function DUF1680 family protein && - && PF07944:Beta-L-arabinofuranosidase, GH127"]
[2,5340151,5340202,52,13,0.551719093052907,0.754770827688883,-0.203051734635975,-60.089946568985,"CG","Os02g0195533","promoter","Os02g0195533","Hypothetical protein && - && PF07944:Beta-L-arabinofuranosidase, GH127"]
[2,5605747,5605846,100,40,0.103870525181776,0.195664638294382,-0.091794113112606,-176.948556363234,"CHH","Os02g0200000","intron","Os02g0200000","Phosphatidylinositol transfer protein-like, N-terminal domain containing protein && sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens OX=9606 GN=SEC14L1 PE=1 SV=2 && PF00650:CRAL/TRIO domain|PF03765:CRAL/TRIO, N-terminal domain"]
[2,5605747,5605846,100,40,0.103870525181776,0.195664638294382,-0.091794113112606,-176.948556363234,"CHH","2:5604739:5606740","CGI_shore"]
[2,6250401,6250499,99,14,0.153426812388612,0.305449577309734,-0.152022764921122,-65.8555318474081,"CHG","Os02g0211800","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 65","Hypothetical conserved gene && sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1 && PF00069:Protein kinase domain|PF13855:Leucine rich repeat"]
[2,6310628,6310692,65,15,0.317334424711441,0.506966550153446,-0.189632125442005,-64.1904794669906,"CHG","Os02g0212900","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 66","Similar to Protein kinase domain containing protein, expressed && sp|O65483|CRK24_ARATH Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CRK24 PE=3 SV=2 && -"]
[2,6310628,6310692,65,15,0.317334424711441,0.506966550153446,-0.189632125442005,-64.1904794669906,"CHG","Os02g0212975","exon","Os02g0212975","Conserved hypothetical protein && - && -"]
[2,6310628,6310692,65,15,0.317334424711441,0.506966550153446,-0.189632125442005,-64.1904794669906,"CHG","Os02g0212975","TES","Os02g0212975","Conserved hypothetical protein && - && -"]
[2,6310628,6310692,65,15,0.317334424711441,0.506966550153446,-0.189632125442005,-64.1904794669906,"CHG","2:6297581:6310891","CGI"]
[2,6446037,6446104,68,5,0.164489890710478,0.509039225958494,-0.344549335248016,-23.7681539816186,"CHG","2:6444976:6446976","CGI_shore"]
[2,6446037,6446104,68,5,0.164489890710478,0.509039225958494,-0.344549335248016,-23.7681539816186,"CHG","Os02g0215200","promoter","CLASS-1 TYPE HISTONE DEACETYLASE 2","Class-I type histone deacetylase, Vegetative growt && sp|Q6YV04|HDAC2_ORYSJ Histone deacetylase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC2 PE=2 SV=1 && PF00850:Histone deacetylase domain"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","2:6496140:6498536","CGI"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0215950","promoter","Os02g0215950","Hypothetical gene && sp|Q1MX30|XA21_ORYSI Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1 && PF08263:Leucine rich repeat N-terminal domain|PF13855:Leucine rich repeat|PF07714:Protein tyrosine kinase"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0216100","utr3","Os02g0216100","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0216100","exon","Os02g0216100","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0216150","exon","Os02g0216150","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0216150","utr5","Os02g0216150","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0216100","intron","Os02g0216100","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6497008,6497337,330,100,0.35027663730415,0.735982955747878,-0.385706318443728,-799.665737435104,"CG","Os02g0216150","intron","Os02g0216150","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6673970,6674021,52,15,0.0553966134403238,0.130120945482984,-0.07472433204266,-86.5973379405,"CHH","2:6672438:6677693","CGI"]
[2,6673970,6674021,52,15,0.0553966134403238,0.130120945482984,-0.07472433204266,-86.5973379405,"CHH","Os02g0219400","promoter","Os02g0219400","Similar to Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica && sp|P49018|GPI8_YEAST GPI-anchor transamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GPI8 PE=1 SV=1 && PF01650:Peptidase C13 family"]
[2,6673997,6674047,51,29,0.111265633725282,0.190680779293396,-0.0794151455681138,-134.979231814676,"CG","2:6672438:6677693","CGI"]
[2,6673997,6674047,51,29,0.111265633725282,0.190680779293396,-0.0794151455681138,-134.979231814676,"CG","Os02g0219400","promoter","Os02g0219400","Similar to Yarrowia lipolytica chromosome F of strain CLIB99 of Yarrowia lipolytica && sp|P49018|GPI8_YEAST GPI-anchor transamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GPI8 PE=1 SV=1 && PF01650:Peptidase C13 family"]
[2,6693934,6694099,166,67,0.0399363534421585,0.120189339146666,-0.0802529857045077,-332.545204439985,"CG","Os02g0220050","exon","Os02g0220050","Hypothetical protein && sp|Q6YW50|CKX7_ORYSJ Cytokinin dehydrogenase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=CKX7 PE=3 SV=1 && PF01565:FAD binding domain"]
[2,6693934,6694099,166,67,0.0399363534421585,0.120189339146666,-0.0802529857045077,-332.545204439985,"CG","2:6693830:6694851","CGI"]
[2,6693934,6694099,166,67,0.0399363534421585,0.120189339146666,-0.0802529857045077,-332.545204439985,"CG","Os02g0220100","exon","CYTOKININ  OXIDASE/DEHYDROGENASE 7","Similar to Cytokinin dehydrogenase 7 && sp|Q6YW50|CKX7_ORYSJ Cytokinin dehydrogenase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=CKX7 PE=3 SV=1 && PF01565:FAD binding domain|PF09265:Cytokinin dehydrogenase 1, FAD and cytokinin binding"]
[2,6826086,6826230,145,23,0.246716849206302,0.475582329638437,-0.228865480432134,-112.1187026376,"CG","2:6825706:6826779","CGI"]
[2,6903167,6903420,254,83,0.619966639838525,0.833502949303518,-0.213536309464993,-496.094791444006,"CG","Os02g0223200","exon","Os02g0223200","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6903167,6903420,254,83,0.619966639838525,0.833502949303518,-0.213536309464993,-496.094791444006,"CG","Os02g0223300","exon","Os02g0223300","Poly(A) polymerase, central domain domain containing protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6903167,6903420,254,83,0.619966639838525,0.833502949303518,-0.213536309464993,-496.094791444006,"CG","Os02g0223300","utr3","Os02g0223300","Poly(A) polymerase, central domain domain containing protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6903167,6903420,254,83,0.619966639838525,0.833502949303518,-0.213536309464993,-496.094791444006,"CG","Os02g0223200","utr5","Os02g0223200","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[2,6903167,6903420,254,83,0.619966639838525,0.833502949303518,-0.213536309464993,-496.094791444006,"CG","2:6903278:6905278","CGI_shore"]
[2,6903167,6903420,254,83,0.619966639838525,0.833502949303518,-0.213536309464993,-496.094791444006,"CG","2:6877127:6903713","CGI"]
[2,6994848,6994999,152,40,0.395975299387768,0.555527026487845,-0.159551727100077,-218.404639622057,"CG","2:6994531:6995538","CGI"]
[2,7105590,7105754,165,39,0.068030988623919,0.226807024117301,-0.158776035493382,-168.99049389441,"CG","2:7105110:7106241","CGI"]
[2,7565061,7565112,52,5,0.147876930730361,0.271837345339324,-0.123960414608963,-21.014997843115,"CHG","2:7563391:7565392","CGI_shore"]
[2,7565061,7565112,52,5,0.147876930730361,0.271837345339324,-0.123960414608963,-21.014997843115,"CHG","2:7564859:7565302","CGI"]
[2,7934924,7935017,94,23,0.513011032744665,0.833794908261373,-0.320783875516708,-123.375720734546,"CG","2:7934085:7936086","CGI_shore"]
[2,7934924,7935017,94,23,0.513011032744665,0.833794908261373,-0.320783875516708,-123.375720734546,"CG","2:7934916:7935316","CGI"]
[2,7999319,7999408,90,18,0.604190781647973,0.763863560801446,-0.159672779153473,-77.7255601194452,"CHG","2:7997988:7999989","CGI_shore"]
[2,8132663,8132785,123,39,0.16613111117893,0.263013157614815,-0.0968820464358848,-137.414699094527,"CHH","2:8132036:8134036","CGI_shore"]
[2,8699520,8699570,51,31,0.0199171862757289,0.0961456767965404,-0.0762284905208114,-148.351385343518,"CHH","2:8699384:8699648","CGI"]
[2,8996593,8996671,79,23,0.00778513326701592,0.104964430542153,-0.0971792972751372,-143.461780141246,"CHH","2:8995367:8997368","CGI_shore"]
[2,9107666,9107843,178,42,0.071531413754265,0.21816228176689,-0.146630868012625,-261.338156646211,"CHH","2:9106712:9108712","CGI_shore"]
[2,9107666,9107843,178,42,0.071531413754265,0.21816228176689,-0.146630868012625,-261.338156646211,"CHH","2:9107434:9109435","CGI_shore"]
[2,9186534,9186703,170,57,0.776121044480163,0.86852095622718,-0.092399911747017,-323.678286471707,"CG","2:9186385:9196569","CGI"]
[2,9282557,9282683,127,14,0.236902792454829,0.683997044555078,-0.44709425210025,-78.1603444907168,"CHG","2:9282242:9284243","CGI_shore"]
[2,9476368,9476463,96,13,0.284799618960374,0.50919139469185,-0.224391775731476,-56.9979372340146,"CHG","2:9475524:9477524","CGI_shore"]
[2,9531323,9531420,98,9,0.442580344146349,0.646810746921128,-0.204230402774779,-44.4781163225547,"CG","Os02g0266500","intron","Os02g0266500","tRNA(Ile)-lysidine/2-thiocytidine synthase domain containing protein && sp|Q6ETX0|RSBZ3_ORYSJ bZIP transcription factor RISBZ3 OS=Oryza sativa subsp. japonica OX=39947 GN=RISBZ3 PE=1 SV=1 && -"]
[2,9531323,9531420,98,9,0.442580344146349,0.646810746921128,-0.204230402774779,-44.4781163225547,"CG","Os02g0266500","exon","Os02g0266500","tRNA(Ile)-lysidine/2-thiocytidine synthase domain containing protein && sp|Q6ETX0|RSBZ3_ORYSJ bZIP transcription factor RISBZ3 OS=Oryza sativa subsp. japonica OX=39947 GN=RISBZ3 PE=1 SV=1 && -"]
[2,9531323,9531420,98,9,0.442580344146349,0.646810746921128,-0.204230402774779,-44.4781163225547,"CG","Os02g0266500","utr3","Os02g0266500","tRNA(Ile)-lysidine/2-thiocytidine synthase domain containing protein && sp|Q6ETX0|RSBZ3_ORYSJ bZIP transcription factor RISBZ3 OS=Oryza sativa subsp. japonica OX=39947 GN=RISBZ3 PE=1 SV=1 && -"]
[2,9599530,9599583,54,15,0.00499663296409426,0.071114818673636,-0.0661181857095417,-80.7020912774227,"CHH","Os02g0268675","promoter","Os02g0268675","Hypothetical protein && sp|Q4PR44|EXP22_ORYSJ Expansin-A22 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA22 PE=2 SV=2 && PF01357:Pollen allergen|PF03330:Lytic transglycolase"]
[2,9599530,9599583,54,15,0.00499663296409426,0.071114818673636,-0.0661181857095417,-80.7020912774227,"CHH","2:9598743:9600743","CGI_shore"]
[2,9599530,9599583,54,15,0.00499663296409426,0.071114818673636,-0.0661181857095417,-80.7020912774227,"CHH","2:9599228:9601229","CGI_shore"]
[2,9698061,9698341,281,112,0.629265811742408,0.744852687910963,-0.115586876168555,-586.402640873456,"CG","2:9687544:9703422","CGI"]
[2,9698670,9698815,146,35,0.748520850080747,0.828085530672076,-0.0795646805913295,-171.317791611546,"CG","2:9687544:9703422","CGI"]
[2,9721823,9721920,98,33,0.531688036145119,0.813762594023755,-0.282074557878636,-160.846243009618,"CG","2:9721404:9722458","CGI"]
[2,9871365,9871440,76,22,0.108906654169171,0.283612962126514,-0.174706307957343,-101.905317102312,"CHH","2:9871267:9872032","CGI"]
[2,10124009,10124219,211,26,0.116538941053461,0.332101135924059,-0.215562194870598,-133.872434630697,"CHG","2:10123042:10124703","CGI"]
[2,10124009,10124219,211,26,0.116538941053461,0.332101135924059,-0.215562194870598,-133.872434630697,"CHG","2:10124162:10126162","CGI_shore"]
[2,10191982,10192067,86,23,0.0323075699215687,0.125922006902927,-0.0936144369813583,-128.795461775009,"CHH","2:10191281:10193281","CGI_shore"]
[2,10457496,10457581,86,17,0.0125243122644429,0.145684893082421,-0.133160580817978,-76.23802389477,"CHH","2:10455802:10457802","CGI_shore"]
[2,10457496,10457581,86,17,0.0125243122644429,0.145684893082421,-0.133160580817978,-76.23802389477,"CHH","2:10456935:10458936","CGI_shore"]
[2,10471594,10471690,97,13,0.36024717892696,0.701762557185286,-0.341515378258326,-77.9608027916603,"CHG","2:10470084:10472084","CGI_shore"]
[2,10471594,10471690,97,13,0.36024717892696,0.701762557185286,-0.341515378258326,-77.9608027916603,"CHG","2:10470454:10472455","CGI_shore"]
[2,10471594,10471690,97,13,0.36024717892696,0.701762557185286,-0.341515378258326,-77.9608027916603,"CHG","2:10471076:10473077","CGI_shore"]
[2,10673625,10673690,66,24,0.573418606663665,0.808556223729519,-0.235137617065854,-100.839056643573,"CG","2:10673125:10674045","CGI"]
[2,10673625,10673690,66,24,0.573418606663665,0.808556223729519,-0.235137617065854,-100.839056643573,"CG","2:10673516:10675516","CGI_shore"]
[2,10730302,10730391,90,8,0.420438533885849,0.763156591732659,-0.34271805784681,-34.4184240145766,"CHG","2:10726096:10732463","CGI"]
[2,10730302,10730391,90,8,0.420438533885849,0.763156591732659,-0.34271805784681,-34.4184240145766,"CHG","Os02g0285700","promoter","Os02g0285700","Similar to predicted protein && sp|Q9LTW5|AGC15_ARATH Serine/threonine-protein kinase AGC1-5 OS=Arabidopsis thaliana OX=3702 GN=AGC1-5 PE=1 SV=1 && -"]
[2,10738031,10738131,101,27,0.491140331427898,0.834633822111349,-0.343493490683451,-132.153705408948,"CG","2:10736278:10738279","CGI_shore"]
[2,10738031,10738131,101,27,0.491140331427898,0.834633822111349,-0.343493490683451,-132.153705408948,"CG","Os02g0285800","promoter","Os02g0285800","Similar to GTP-binding protein typA (Tyrosine phosphorylated protein A) && sp|F4K410|SVR3_ARATH Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR3 PE=1 SV=1 && PF00009:Elongation factor Tu GTP binding domain|PF00679:Elongation factor G C-terminus|PF03144:Elongation factor Tu domain 2"]
[2,10738031,10738131,101,27,0.491140331427898,0.834633822111349,-0.343493490683451,-132.153705408948,"CG","2:10737894:10739770","CGI"]
[2,10779689,10779890,202,41,0.029329169339053,0.191869496665071,-0.162540327326018,-285.758015802691,"CHH","2:10778027:10780028","CGI_shore"]
[2,10779689,10779890,202,41,0.029329169339053,0.191869496665071,-0.162540327326018,-285.758015802691,"CHH","2:10778335:10780335","CGI_shore"]
[2,10779689,10779890,202,41,0.029329169339053,0.191869496665071,-0.162540327326018,-285.758015802691,"CHH","Os02g0286850","intron","Os02g0286850","Similar to Stripe rust resistance protein Yr10 && sp|Q2R8L1|RGA5S_ORYSJ Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=2 SV=1 && PF00931:NB-ARC domain"]
[2,10821039,10821175,137,28,0.560759925036192,0.856876414413055,-0.296116489376862,-127.220209331319,"CG","2:10819998:10821998","CGI_shore"]
[2,10821039,10821175,137,28,0.560759925036192,0.856876414413055,-0.296116489376862,-127.220209331319,"CG","2:10820997:10821309","CGI"]
[2,11464747,11464887,141,44,0.652433919390746,0.831221783863338,-0.178787864472592,-209.012330179821,"CG","2:11463702:11465703","CGI_shore"]
[2,11464747,11464887,141,44,0.652433919390746,0.831221783863338,-0.178787864472592,-209.012330179821,"CG","2:11464607:11465041","CGI"]
[2,11464772,11464836,65,16,0.169923424706434,0.38041225790645,-0.210488833200016,-81.2849376618215,"CHG","2:11463702:11465703","CGI_shore"]
[2,11464772,11464836,65,16,0.169923424706434,0.38041225790645,-0.210488833200016,-81.2849376618215,"CHG","2:11464607:11465041","CGI"]
[2,11521404,11521508,105,23,0.113464846681054,0.293248793125835,-0.179783946444781,-141.598035983104,"CHH","2:11519718:11521718","CGI_shore"]
[2,11570719,11570825,107,24,0.517022703717366,0.827778565171947,-0.310755861454581,-104.956499354566,"CG","2:11568736:11570737","CGI_shore"]
[2,11570719,11570825,107,24,0.517022703717366,0.827778565171947,-0.310755861454581,-104.956499354566,"CG","2:11570335:11571511","CGI"]
[2,12118777,12118883,107,41,0.0155050062770129,0.116555184270127,-0.101050177993114,-180.377267502304,"CHH","2:12117691:12119692","CGI_shore"]
[2,12410231,12410405,175,43,0.15230269943697,0.450591737183678,-0.298289037746707,-250.013446602241,"CG","2:12409933:12410767","CGI"]
[2,12433029,12433235,207,44,0.0842720627667787,0.30306701319605,-0.218794950429272,-267.869379251801,"CHH","2:12432729:12434730","CGI_shore"]
[2,12433029,12433235,207,44,0.0842720627667787,0.30306701319605,-0.218794950429272,-267.869379251801,"CHH","Os02g0314300","intron","Ca(2+)/H(+) EXCHANGER 1C","Sodium/calcium exchanger membrane region domain containing protein && sp|Q5KTQ9|CAX1C_ORYSJ Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica OX=39947 GN=CAX1c PE=2 SV=1 && PF01699:Sodium/calcium exchanger protein"]
[2,12433874,12434071,198,45,0.121088977393392,0.245499264656447,-0.124410287263055,-239.69265561067,"CHH","2:12432729:12434730","CGI_shore"]
[2,12433874,12434071,198,45,0.121088977393392,0.245499264656447,-0.124410287263055,-239.69265561067,"CHH","Os02g0314300","intron","Ca(2+)/H(+) EXCHANGER 1C","Sodium/calcium exchanger membrane region domain containing protein && sp|Q5KTQ9|CAX1C_ORYSJ Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica OX=39947 GN=CAX1c PE=2 SV=1 && PF01699:Sodium/calcium exchanger protein"]
[2,12698167,12698296,130,30,0.00924482738779446,0.0813593600884887,-0.0721145327006942,-181.73745945461,"CHH","2:12696303:12698304","CGI_shore"]
[2,12980880,12980954,75,27,0.677708453996631,0.82122269943326,-0.14351424543663,-103.236132919236,"CG","2:12979444:12984188","CGI"]
[2,12980885,12981061,177,26,0.330314323516015,0.635688597418392,-0.305374273902377,-137.676589030046,"CHG","2:12979444:12984188","CGI"]
[2,12983721,12983914,194,40,0.669142973743785,0.863413215486548,-0.194270241742763,-208.742572464056,"CG","2:12979444:12984188","CGI"]
[2,13167041,13167161,121,21,0.424722679441099,0.705570079140977,-0.280847399699878,-87.0260679697931,"CHG","2:13165987:13167987","CGI_shore"]
[2,13420253,13420385,133,31,0.0503181682298094,0.14442407413795,-0.0941059059081402,-153.144871794739,"CHH","Os02g0330400","promoter","Os02g0330400","Hypothetical protein && sp|Q6ZFR0|XAT2_ORYSJ Alpha-1,3-arabinosyltransferase XAT2 OS=Oryza sativa subsp. japonica OX=39947 GN=XAT2 PE=1 SV=1 && -"]
[2,13420253,13420385,133,31,0.0503181682298094,0.14442407413795,-0.0941059059081402,-153.144871794739,"CHH","2:13379166:13457504","CGI"]
[2,13448535,13448622,88,21,0.432002378130416,0.763212371943843,-0.331209993813427,-91.8302518104159,"CG","2:13379166:13457504","CGI"]
[2,13530235,13530396,162,32,0.18329311785194,0.445729100928933,-0.262435983076993,-254.623056281332,"CG","2:13528980:13532049","CGI"]
[2,13530235,13530396,162,32,0.18329311785194,0.445729100928933,-0.262435983076993,-254.623056281332,"CG","2:13530266:13532266","CGI_shore"]
[2,13530251,13530349,99,13,0.0794813665411624,0.294134638449051,-0.214653271907889,-97.4617602460539,"CHG","2:13528980:13532049","CGI"]
[2,13530251,13530349,99,13,0.0794813665411624,0.294134638449051,-0.214653271907889,-97.4617602460539,"CHG","2:13530266:13532266","CGI_shore"]
[2,13531748,13531839,92,17,0.138206723635071,0.275210544578344,-0.137003820943273,-73.0728541539777,"CHG","2:13528980:13532049","CGI"]
[2,13531748,13531839,92,17,0.138206723635071,0.275210544578344,-0.137003820943273,-73.0728541539777,"CHG","2:13530266:13532266","CGI_shore"]
[2,13544971,13545051,81,11,0.458289259620344,0.800114866847416,-0.341825607227072,-52.8687426671584,"CG","2:13544658:13545132","CGI"]
[2,13544971,13545051,81,11,0.458289259620344,0.800114866847416,-0.341825607227072,-52.8687426671584,"CG","2:13544887:13546887","CGI_shore"]
[2,13605252,13605477,226,35,0.213147463043603,0.483708546376167,-0.270561083332564,-214.562642240447,"CHG","Os02g0332800","promoter","Os02g0332800","Hypothetical gene && - && -"]
[2,13605252,13605477,226,35,0.213147463043603,0.483708546376167,-0.270561083332564,-214.562642240447,"CHG","Os02g0332700","utr3","Os02g0332700","Conserved hypothetical protein && - && -"]
[2,13605252,13605477,226,35,0.213147463043603,0.483708546376167,-0.270561083332564,-214.562642240447,"CHG","Os02g0332700","exon","Os02g0332700","Conserved hypothetical protein && - && -"]
[2,13605348,13605512,165,50,0.263287929736456,0.491561564028134,-0.228273634291678,-264.401937624797,"CG","Os02g0332800","promoter","Os02g0332800","Hypothetical gene && - && -"]
[2,13605348,13605512,165,50,0.263287929736456,0.491561564028134,-0.228273634291678,-264.401937624797,"CG","Os02g0332700","utr3","Os02g0332700","Conserved hypothetical protein && - && -"]
[2,13605348,13605512,165,50,0.263287929736456,0.491561564028134,-0.228273634291678,-264.401937624797,"CG","Os02g0332700","exon","Os02g0332700","Conserved hypothetical protein && - && -"]
[2,13809621,13809736,116,38,0.104266062390626,0.264597399039115,-0.160331336648489,-177.984629679123,"CHH","2:13808583:13810583","CGI_shore"]
[2,13880680,13880756,77,9,0.295145090750662,0.568839013182896,-0.273693922432234,-44.1555659937258,"CHG","2:13878974:13880975","CGI_shore"]
[2,13880680,13880756,77,9,0.295145090750662,0.568839013182896,-0.273693922432234,-44.1555659937258,"CHG","2:13879472:13881472","CGI_shore"]
[2,13916449,13916514,66,24,0.590887396715364,0.82713968404408,-0.236252287328717,-123.201047752035,"CG","2:13915825:13916738","CGI"]
[2,13966395,13966463,69,15,0.483817938071582,0.809251536211709,-0.325433598140126,-70.187310266642,"CG","Os02g0437300","utr3","Os02g0437300","Conserved hypothetical protein && - && -"]
[2,13966395,13966463,69,15,0.483817938071582,0.809251536211709,-0.325433598140126,-70.187310266642,"CG","Os02g0437300","exon","Os02g0437300","Conserved hypothetical protein && - && -"]
[2,13966395,13966463,69,15,0.483817938071582,0.809251536211709,-0.325433598140126,-70.187310266642,"CG","2:13965849:13966498","CGI"]
[2,13969878,13969976,99,37,0.0127296426974176,0.0669224653147732,-0.0541928226173556,-192.334293125863,"CHH","2:13967923:13969923","CGI_shore"]
[2,13969878,13969976,99,37,0.0127296426974176,0.0669224653147732,-0.0541928226173556,-192.334293125863,"CHH","2:13969924:13971525","CGI"]
[2,13969890,13970267,378,78,0.228420322152777,0.427414922767782,-0.198994600615005,-388.410113607332,"CG","2:13967923:13969923","CGI_shore"]
[2,13969890,13970267,378,78,0.228420322152777,0.427414922767782,-0.198994600615005,-388.410113607332,"CG","2:13969924:13971525","CGI"]
[2,13988811,13989020,210,47,0.163691931410072,0.511948026457635,-0.348256095047563,-314.128759889625,"CHH","Os02g0437800","promoter","Os02g0437800","Similar to vacuolar protein-sorting protein 45 && sp|O49048|VPS45_ARATH Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS45 PE=1 SV=2 && PF00995:Sec1 family"]
[2,13988811,13989020,210,47,0.163691931410072,0.511948026457635,-0.348256095047563,-314.128759889625,"CHH","2:13988230:13990231","CGI_shore"]
[2,14177799,14177919,121,35,0.115222836337445,0.319528833613112,-0.204305997275667,-177.449079414294,"CG","2:14175424:14181352","CGI"]
[2,14220226,14220293,68,17,0.165763361009839,0.290665787829116,-0.124902426819277,-71.7997784006033,"CG","2:14218788:14220789","CGI_shore"]
[2,14220226,14220293,68,17,0.165763361009839,0.290665787829116,-0.124902426819277,-71.7997784006033,"CG","2:14219938:14220924","CGI"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","Os02g0445200","promoter","Os02g0445200","Similar to SLP16 && sp|Q6YZE8|SPL16_ORYSJ Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL16 PE=2 SV=1 && -"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","2:14333234:14335230","CGI"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","Os02g0445200","TSS","Os02g0445200","Similar to SLP16 && sp|Q6YZE8|SPL16_ORYSJ Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL16 PE=2 SV=1 && -"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","Os02g0445200","exon","Os02g0445200","Similar to SLP16 && sp|Q6YZE8|SPL16_ORYSJ Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL16 PE=2 SV=1 && -"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","Target=(TA)n:1-81;Class=Simple_repeat","repeat"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","2:14334813:14336813","CGI_shore"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","Os02g0445300","promoter","Os02g0445300","Similar to Non-specific lipid-transfer protein && sp|O65091|NLTP4_ORYSJ Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0114500 PE=3 SV=2 && -"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","Os02g0445200","intron","Os02g0445200","Similar to SLP16 && sp|Q6YZE8|SPL16_ORYSJ Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL16 PE=2 SV=1 && -"]
[2,14334525,14335427,903,36,0.0600554668096213,0.196608274342629,-0.136552807533008,-173.090688003117,"CHH","2:14335230:14337231","CGI_shore"]
[2,14580953,14581665,713,4,0.491678343236043,0.693187736231412,-0.201509392995369,-16.0093994341568,"CHG","2:14579239:14581240","CGI_shore"]
[2,14580953,14581665,713,4,0.491678343236043,0.693187736231412,-0.201509392995369,-16.0093994341568,"CHG","2:14579484:14581484","CGI_shore"]
[2,14580953,14581665,713,4,0.491678343236043,0.693187736231412,-0.201509392995369,-16.0093994341568,"CHG","2:14581485:14581961","CGI"]
[2,14692061,14692127,67,14,0.089835422159717,0.303561988729746,-0.213726566570029,-84.3661781261602,"CHH","2:14690474:14692474","CGI_shore"]
[2,15314549,15314657,109,27,0.0200915329438809,0.124436158024887,-0.104344625081006,-143.825967219538,"CHH","2:15314254:15316255","CGI_shore"]
[2,15314549,15314657,109,27,0.0200915329438809,0.124436158024887,-0.104344625081006,-143.825967219538,"CHH","Os02g0458900","intron","Os02g0458900","Conserved hypothetical protein && sp|Q67ZI9|GDL48_ARATH GDSL esterase/lipase At2g42990 OS=Arabidopsis thaliana OX=3702 GN=At2g42990 PE=2 SV=1 && -"]
[2,15419640,15419740,101,42,0.0308041674116165,0.184370937002873,-0.153566769591257,-209.176187938862,"CHH","2:15418226:15420227","CGI_shore"]
[2,15419640,15419740,101,42,0.0308041674116165,0.184370937002873,-0.153566769591257,-209.176187938862,"CHH","2:15418532:15420532","CGI_shore"]
[2,15419640,15419740,101,42,0.0308041674116165,0.184370937002873,-0.153566769591257,-209.176187938862,"CHH","2:15418911:15420094","CGI"]
[2,15733378,15733556,179,51,0.701770753931914,0.856559235426035,-0.154788481494121,-204.527331224932,"CG","Os02g0467400","exon","Os02g0467400","Hypothetical protein && - && -"]
[2,15733378,15733556,179,51,0.701770753931914,0.856559235426035,-0.154788481494121,-204.527331224932,"CG","Os02g0467600","promoter","cinnamate 4-hydroxylase 1","Similar to Cinnamate 4-hydroxylase CYP73 && sp|H2DH22|C7A10_PANGI Cytochrome P450 CYP73A100 OS=Panax ginseng OX=4054 PE=2 SV=1 && PF00067:Cytochrome P450"]
[2,15733378,15733556,179,51,0.701770753931914,0.856559235426035,-0.154788481494121,-204.527331224932,"CG","2:15732967:15736629","CGI"]
[2,15733378,15733556,179,51,0.701770753931914,0.856559235426035,-0.154788481494121,-204.527331224932,"CG","Os02g0467400","utr5","Os02g0467400","Hypothetical protein && - && -"]
[2,15733378,15733556,179,51,0.701770753931914,0.856559235426035,-0.154788481494121,-204.527331224932,"CG","Os02g0467400","promoter","Os02g0467400","Hypothetical protein && - && -"]
[2,15733378,15733556,179,51,0.701770753931914,0.856559235426035,-0.154788481494121,-204.527331224932,"CG","Os02g0467400","TSS","Os02g0467400","Hypothetical protein && - && -"]
[2,15738449,15738573,125,34,0.101918325928653,0.241193159420075,-0.139274833491422,-174.32154225755,"CHH","2:15736629:15738630","CGI_shore"]
[2,15738449,15738573,125,34,0.101918325928653,0.241193159420075,-0.139274833491422,-174.32154225755,"CHH","Os02g0467700","promoter","Os02g0467700","Glycosyl transferase, family 28, C-terminal domain containing protein && sp|Q5I0K7|ALG13_RAT UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus OX=10116 GN=Alg13 PE=1 SV=1 && -"]
[2,15739596,15739741,146,17,0.182555973728457,0.397973045821271,-0.215417072092814,-90.9115597061016,"CG","Os02g0467700","promoter","Os02g0467700","Glycosyl transferase, family 28, C-terminal domain containing protein && sp|Q5I0K7|ALG13_RAT UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus OX=10116 GN=Alg13 PE=1 SV=1 && -"]
[2,15758057,15758302,246,51,0.304631813078726,0.472779664129661,-0.168147851050935,-246.672849787163,"CG","Os02g0468100","promoter","Os02g0468100","Similar to Wax synthase isoform 1 && sp|Q9FJ75|WAXS4_ARATH Probable long-chain-alcohol O-fatty-acyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=AT4 PE=2 SV=1 && PF13813:Membrane bound O-acyl transferase family"]
[2,15758057,15758302,246,51,0.304631813078726,0.472779664129661,-0.168147851050935,-246.672849787163,"CG","2:15757454:15759454","CGI_shore"]
[2,15758057,15758302,246,51,0.304631813078726,0.472779664129661,-0.168147851050935,-246.672849787163,"CG","2:15757894:15758368","CGI"]
[2,15995485,15995557,73,27,0.0505649593954101,0.293957947444979,-0.243392988049569,-138.077668962415,"CHH","2:15995243:15996585","CGI"]
[2,15995488,15995694,207,32,0.321158576545042,0.727966480373458,-0.406807903828415,-193.251549480531,"CG","2:15995243:15996585","CGI"]
[2,16297468,16297788,321,67,0.187593255705144,0.379243713547895,-0.191650457842751,-353.859904339323,"CG","2:16292502:16300506","CGI"]
[2,16411921,16411984,64,11,0.196967910829346,0.36881381979879,-0.171845908969443,-47.4140939012075,"CHG","2:16410649:16412650","CGI_shore"]
[2,16411921,16411984,64,11,0.196967910829346,0.36881381979879,-0.171845908969443,-47.4140939012075,"CHG","2:16411863:16413104","CGI"]
[2,16999988,17000103,116,41,0.0703200441540582,0.155298220457741,-0.0849781763036826,-185.178190103045,"CHH","2:16998328:17000329","CGI_shore"]
[2,16999988,17000103,116,41,0.0703200441540582,0.155298220457741,-0.0849781763036826,-185.178190103045,"CHH","2:16998778:17000778","CGI_shore"]
[2,17002928,17003014,87,15,0.00413714755390475,0.0711334128398807,-0.0669962652859759,-70.8393409795829,"CHH","2:17001472:17003473","CGI_shore"]
[2,17089451,17089511,61,19,0.110016315950782,0.341457820606627,-0.231441504655845,-106.885709770153,"CHH","2:17089089:17091089","CGI_shore"]
[2,17089451,17089511,61,19,0.110016315950782,0.341457820606627,-0.231441504655845,-106.885709770153,"CHH","2:17089274:17089854","CGI"]
[2,17153560,17153630,71,19,0.181405432883242,0.328786854418466,-0.147381421535223,-104.605519549332,"CHH","2:17152338:17154339","CGI_shore"]
[2,17280486,17280647,162,23,0.271570034494014,0.640176423330612,-0.368606388836598,-118.011227394573,"CG","Os02g0493300","intron","Os02g0493300","Tetratricopeptide-like helical domain containing protein && - && PF12796:Ankyrin repeats (3 copies)"]
[2,17280486,17280647,162,23,0.271570034494014,0.640176423330612,-0.368606388836598,-118.011227394573,"CG","2:17280484:17282519","CGI"]
[2,17315633,17315803,171,24,0.286848935188829,0.552272969353385,-0.265424034164555,-125.231343306093,"CG","2:17313667:17315667","CGI_shore"]
[2,17315633,17315803,171,24,0.286848935188829,0.552272969353385,-0.265424034164555,-125.231343306093,"CG","Os02g0494000","intron","Os02g0494000","Ankyrin repeat domain containing protein && - && PF12796:Ankyrin repeats (3 copies)"]
[2,17315633,17315803,171,24,0.286848935188829,0.552272969353385,-0.265424034164555,-125.231343306093,"CG","Os02g0494000","exon","Os02g0494000","Ankyrin repeat domain containing protein && - && PF12796:Ankyrin repeats (3 copies)"]
[2,17315633,17315803,171,24,0.286848935188829,0.552272969353385,-0.265424034164555,-125.231343306093,"CG","2:17315668:17316304","CGI"]
[2,17427263,17427321,59,8,0.145378662724379,0.653759093594751,-0.508380430870372,-35.1675072845787,"CG","Os02g0496100","promoter","HEAT STRESS TRANSCRIPTION FACTOR A5","Heat shock factor (HSF)-type, DNA-binding domain containing protein && sp|Q6K6S5|HSFA5_ORYSJ Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA5 PE=2 SV=1 && PF00447:HSF-type DNA-binding"]
[2,17427263,17427321,59,8,0.145378662724379,0.653759093594751,-0.508380430870372,-35.1675072845787,"CG","2:17426053:17428053","CGI_shore"]
[2,17890344,17890440,97,32,0.0571947352412715,0.174889977974051,-0.117695242732779,-162.792035604507,"CHH","Os02g0504050","promoter","Os02g0504050","Hypothetical conserved gene && - && -"]
[2,17890344,17890440,97,32,0.0571947352412715,0.174889977974051,-0.117695242732779,-162.792035604507,"CHH","2:17889880:17891881","CGI_shore"]
[2,17890344,17890440,97,32,0.0571947352412715,0.174889977974051,-0.117695242732779,-162.792035604507,"CHH","2:17889977:17891977","CGI_shore"]
[2,18019261,18019355,95,21,0.507483602191211,0.808766745577298,-0.301283143386087,-111.478621780584,"CG","2:18018770:18019542","CGI"]
[2,18154251,18154336,86,14,0.517656299871592,0.724307178311952,-0.20665087844036,-55.7181658646116,"CHG","2:18145759:18162666","CGI"]
[2,18261774,18261946,173,59,0.126328209591036,0.415577635235066,-0.28924942564403,-365.721826878896,"CHH","2:18260648:18262648","CGI_shore"]
[2,18297048,18297192,145,39,0.0443517692108396,0.187298106560839,-0.14294633735,-276.232245663979,"CHH","2:18295606:18297606","CGI_shore"]
[2,18297048,18297192,145,39,0.0443517692108396,0.187298106560839,-0.14294633735,-276.232245663979,"CHH","Os02g0511400","intron","Os02g0511400","Glucose/ribitol dehydrogenase family protein && sp|P0DKC5|HSD1A_ARATH 11-beta-hydroxysteroid dehydrogenase 1A OS=Arabidopsis thaliana OX=3702 GN=HSD1 PE=1 SV=1 && PF00106:short chain dehydrogenase"]
[2,18297849,18297948,100,20,0.554715891117385,0.791957418168769,-0.237241527051383,-93.8823680186936,"CG","2:18297607:18297976","CGI"]
[2,18297849,18297948,100,20,0.554715891117385,0.791957418168769,-0.237241527051383,-93.8823680186936,"CG","Os02g0511400","intron","Os02g0511400","Glucose/ribitol dehydrogenase family protein && sp|P0DKC5|HSD1A_ARATH 11-beta-hydroxysteroid dehydrogenase 1A OS=Arabidopsis thaliana OX=3702 GN=HSD1 PE=1 SV=1 && PF00106:short chain dehydrogenase"]
[2,18305091,18305190,100,20,0.140298976214775,0.405785550394474,-0.265486574179699,-128.092071437112,"CHH","2:18303378:18305378","CGI_shore"]
[2,18305091,18305190,100,20,0.140298976214775,0.405785550394474,-0.265486574179699,-128.092071437112,"CHH","Os02g0511400","intron","Os02g0511400","Glucose/ribitol dehydrogenase family protein && sp|P0DKC5|HSD1A_ARATH 11-beta-hydroxysteroid dehydrogenase 1A OS=Arabidopsis thaliana OX=3702 GN=HSD1 PE=1 SV=1 && PF00106:short chain dehydrogenase"]
[2,18872477,18872539,63,19,0.00481602506352537,0.0559439217040167,-0.0511278966404914,-89.5993614729002,"CHH","2:18870610:18872610","CGI_shore"]
[2,18872477,18872539,63,19,0.00481602506352537,0.0559439217040167,-0.0511278966404914,-89.5993614729002,"CHH","2:18871762:18873763","CGI_shore"]
[2,18872477,18872539,63,19,0.00481602506352537,0.0559439217040167,-0.0511278966404914,-89.5993614729002,"CHH","Os02g0519100","utr3","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 20","Similar to Potassium transporter && sp|Q6H4L9|HAK20_ORYSJ Potassium transporter 20 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK20 PE=2 SV=1 && PF02705:K+ potassium transporter"]
[2,18872477,18872539,63,19,0.00481602506352537,0.0559439217040167,-0.0511278966404914,-89.5993614729002,"CHH","Os02g0519100","exon","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 20","Similar to Potassium transporter && sp|Q6H4L9|HAK20_ORYSJ Potassium transporter 20 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK20 PE=2 SV=1 && PF02705:K+ potassium transporter"]
[2,18922978,18923056,79,19,0.0517282577386184,0.143929732250902,-0.0922014745122836,-85.8218987042361,"CHH","2:18921477:18923477","CGI_shore"]
[2,18922978,18923056,79,19,0.0517282577386184,0.143929732250902,-0.0922014745122836,-85.8218987042361,"CHH","Os02g0519950","promoter","Os02g0519950","Hypothetical protein && sp|Q9ASR1|EF2_ARATH Elongation factor 2 OS=Arabidopsis thaliana OX=3702 GN=LOS1 PE=1 SV=1 && PF03144:Elongation factor Tu domain 2|PF14492:Elongation Factor G, domain II|PF00679:Elongation factor G C-terminus|PF00009:Elongation factor Tu GTP binding domain|PF03764:Elongation factor G, domain IV"]
[2,18967323,18967410,88,14,0.281393543231728,0.713743809496627,-0.432350266264899,-57.0840148612856,"CG","2:18961009:18971081","CGI"]
[2,19339415,19339509,95,17,0.00672558805354378,0.0778921181721558,-0.071166530118612,-80.031173870565,"CHH","Os02g0527800","promoter","Os02g0527800","Hypothetical gene && - && -"]
[2,19339415,19339509,95,17,0.00672558805354378,0.0778921181721558,-0.071166530118612,-80.031173870565,"CHH","2:19331123:19347547","CGI"]
[2,19622263,19622325,63,14,0.02497745201825,0.12801145247887,-0.10303400046062,-102.561976648033,"CHH","Os02g0532900","intron","Os02g0532900","Glycoside hydrolase, family 17 protein && sp|Q9ZQG9|E1314_ARATH Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana OX=3702 GN=At2g27500 PE=2 SV=2 && PF00332:Glycosyl hydrolases family 17"]
[2,20151645,20151747,103,13,0.0771200974274427,0.231124313961891,-0.154004216534448,-56.3147450528207,"CG","Os02g0542500","promoter","Os02g0542500","Similar to NF-180 && - && -"]
[2,20151645,20151747,103,13,0.0771200974274427,0.231124313961891,-0.154004216534448,-56.3147450528207,"CG","2:20150614:20152614","CGI_shore"]
[2,20191077,20191150,74,42,0.0735611496597745,0.156083048734615,-0.0825218990748402,-189.445191933446,"CHH","2:20191041:20193042","CGI_shore"]
[2,20672487,20672572,86,12,0.448378749556112,0.700297491823526,-0.251918742267415,-47.848564218272,"CHG","2:20670544:20672544","CGI_shore"]
[2,20672487,20672572,86,12,0.448378749556112,0.700297491823526,-0.251918742267415,-47.848564218272,"CHG","2:20672545:20672803","CGI"]
[2,20672583,20672760,178,47,0.565339489595894,0.81514986330607,-0.249810373710176,-232.285924546874,"CG","2:20672545:20672803","CGI"]
[2,21218432,21218502,71,8,0.193219669255789,0.644955531896299,-0.451735862640509,-40.8492934886483,"CHG","2:21217789:21219789","CGI_shore"]
[2,21889936,21890128,193,29,0.165584454764968,0.4855008818966,-0.319916427131632,-149.449480020567,"CHG","Os02g0571800","intron","ENT-KAURENE SYNTHASE 6","Terpene synthase-like domain containing protein && sp|A4KAG8|KSL6_ORYSJ Ent-isokaur-15-ene synthase OS=Oryza sativa subsp. japonica OX=39947 GN=KSL6 PE=1 SV=2 && PF03936:Terpene synthase family, metal binding domain|PF01397:Terpene synthase, N-terminal domain"]
[2,21889936,21890128,193,29,0.165584454764968,0.4855008818966,-0.319916427131632,-149.449480020567,"CHG","Target=(CGG)n:2-180;Class=Simple_repeat","repeat"]
[2,21889994,21890131,138,30,0.457153463119182,0.785413421122695,-0.328259958003513,-168.182266801536,"CG","Os02g0571800","intron","ENT-KAURENE SYNTHASE 6","Terpene synthase-like domain containing protein && sp|A4KAG8|KSL6_ORYSJ Ent-isokaur-15-ene synthase OS=Oryza sativa subsp. japonica OX=39947 GN=KSL6 PE=1 SV=2 && PF03936:Terpene synthase family, metal binding domain|PF01397:Terpene synthase, N-terminal domain"]
[2,21889994,21890131,138,30,0.457153463119182,0.785413421122695,-0.328259958003513,-168.182266801536,"CG","Target=(CGG)n:2-180;Class=Simple_repeat","repeat"]
[2,21938254,21938445,192,38,0.04463012185606,0.273763930545255,-0.229133808689195,-211.74176552233,"CHH","2:21937989:21938699","CGI"]
[2,22115140,22115305,166,27,0.428925785262049,0.75814556108675,-0.329219775824701,-136.609829247479,"CG","Os02g0575900","intron","EXOCYST SUBUNIT EXO70 FAMILY PROTEIN FX6","Exo70 exocyst complex subunit family protein && - && PF03081:Exo70 exocyst complex subunit"]
[2,22314511,22314590,80,27,0.621048987301358,0.875595672879428,-0.25454668557807,-151.562334771412,"CG","2:22312210:22314673","CGI"]
[2,22314511,22314590,80,27,0.621048987301358,0.875595672879428,-0.25454668557807,-151.562334771412,"CG","Os02g0579800","promoter","FW2.2-like 2","Similar to Fw2.2 && sp|B6TYV8|CNR2_MAIZE Cell number regulator 2 OS=Zea mays OX=4577 GN=CNR2 PE=2 SV=1 && PF04749:PLAC8 family"]
[2,22570681,22570737,57,12,0.582363157221864,0.834383607646778,-0.252020450424914,-57.6554469499413,"CG","Os02g0585650","promoter","Os02g0585650","Hypothetical gene && - && -"]
[2,22570681,22570737,57,12,0.582363157221864,0.834383607646778,-0.252020450424914,-57.6554469499413,"CG","Os02g0585566","exon","Os02g0585566","Conserved hypothetical protein && - && -"]
[2,22570681,22570737,57,12,0.582363157221864,0.834383607646778,-0.252020450424914,-57.6554469499413,"CG","2:22570564:22572564","CGI_shore"]
[2,22593066,22593152,87,4,0.0973851117807989,0.329292840055489,-0.23190772827469,-26.629305153804,"CG","2:22591397:22593397","CGI_shore"]
[2,22593066,22593152,87,4,0.0973851117807989,0.329292840055489,-0.23190772827469,-26.629305153804,"CG","2:22591857:22593858","CGI_shore"]
[2,22611495,22611587,93,12,0.0440722712147753,0.348517234047752,-0.304444962832976,-71.7629732976321,"CHG","Os02g0586700","intron","Os02g0586700","Conserved hypothetical protein && - && -"]
[2,22611515,22611577,63,17,0.0173495015908084,0.0879840316225569,-0.0706345300317485,-82.5274155095586,"CHH","Os02g0586700","intron","Os02g0586700","Conserved hypothetical protein && - && -"]
[2,22799593,22799757,165,43,0.590393641308398,0.766146359276316,-0.175752717967919,-209.990162008438,"CG","2:22798846:22799982","CGI"]
[2,22852948,22853015,68,5,0.465783559300792,0.783434533009131,-0.317650973708339,-24.3246276954137,"CHG","2:22851196:22853197","CGI_shore"]
[2,22957977,22958085,109,36,0.334641990699479,0.656280545670842,-0.321638554971363,-287.563683986157,"CHG","Os02g0593100","intron","DIAMINE OXIDASE 5","Similar to OSIGBa0106G07.12 protein && sp|Q07121|AMO1_ARTS1 Primary amine oxidase OS=Arthrobacter sp. (strain P1) OX=47915 GN=maoI PE=1 SV=1 && PF01179:Copper amine oxidase, enzyme domain|PF02728:Copper amine oxidase, N3 domain"]
[2,22957977,22958085,109,36,0.334641990699479,0.656280545670842,-0.321638554971363,-287.563683986157,"CHG","2:22957847:22962259","CGI"]
[2,23496001,23496070,70,14,0.569810748129582,0.793226696275876,-0.223415948146294,-63.0846406568796,"CG","2:23494708:23496426","CGI"]
[2,23496001,23496070,70,14,0.569810748129582,0.793226696275876,-0.223415948146294,-63.0846406568796,"CG","Os02g0600650","exon","Os02g0600650","Conserved hypothetical protein && - && -"]
[2,23559540,23559750,211,46,0.105797410042252,0.26716987833109,-0.161372468288838,-210.17248454196,"CG","Os02g0602000","promoter","REMORIN 6.5","Remorin, C-terminal region domain containing protein && - && PF03763:Remorin, C-terminal region"]
[2,23559540,23559750,211,46,0.105797410042252,0.26716987833109,-0.161372468288838,-210.17248454196,"CG","2:23553126:23563086","CGI"]
[2,23706110,23706209,100,23,0.0250526136230978,0.0795996743783717,-0.0545470607552739,-105.321634340121,"CG","Os02g0604800","exon","Os02g0604800","Putative cyclin-F1-3 && sp|Q6K8S1|CCF13_ORYSJ Putative cyclin-F1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCF1-3 PE=3 SV=1 && PF00134:Cyclin, N-terminal domain|PF02984:Cyclin, C-terminal domain"]
[2,23789840,23790026,187,48,0.0210870653719709,0.0994204976904835,-0.0783334323185127,-251.212685527442,"CG","Os02g0607100","exon","Os02g0607100","Putative uncharacterized protein && sp|Q6K8S5|CCF12_ORYSJ Putative cyclin-F1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCF1-2 PE=3 SV=1 && PF02984:Cyclin, C-terminal domain|PF00134:Cyclin, N-terminal domain"]
[2,23789840,23790026,187,48,0.0210870653719709,0.0994204976904835,-0.0783334323185127,-251.212685527442,"CG","2:23781609:23813292","CGI"]
[2,23812624,23812775,152,30,0.0746533819093738,0.184697785260311,-0.110044403350937,-138.110463677967,"CG","Os02g0607400","exon","Protein phosphatase 32","Putative cyclin-F1-1 && sp|Q6K1Z1|CCF11_ORYSJ Putative cyclin-F1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCF1-1 PE=3 SV=1 && PF00134:Cyclin, N-terminal domain|PF02984:Cyclin, C-terminal domain"]
[2,23812624,23812775,152,30,0.0746533819093738,0.184697785260311,-0.110044403350937,-138.110463677967,"CG","2:23781609:23813292","CGI"]
[2,23812721,23812774,54,11,0.044728396077218,0.170996150430701,-0.126267754353483,-50.7625803991324,"CHG","Os02g0607400","exon","Protein phosphatase 32","Putative cyclin-F1-1 && sp|Q6K1Z1|CCF11_ORYSJ Putative cyclin-F1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCF1-1 PE=3 SV=1 && PF00134:Cyclin, N-terminal domain|PF02984:Cyclin, C-terminal domain"]
[2,23812721,23812774,54,11,0.044728396077218,0.170996150430701,-0.126267754353483,-50.7625803991324,"CHG","2:23781609:23813292","CGI"]
[2,24151589,24151708,120,18,0.165772177211125,0.421207942689522,-0.255435765478398,-111.827328746421,"CG","2:24150260:24152260","CGI_shore"]
[2,24393966,24394064,99,30,0.0976278280233689,0.173885560267831,-0.0762577322444621,-124.549226654071,"CHH","Os02g0616300","intron","Os02g0616300","Similar to Protein argonaute MEL1 && sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica OX=39947 GN=MEL1 PE=2 SV=1 && -"]
[2,24393966,24394064,99,30,0.0976278280233689,0.173885560267831,-0.0762577322444621,-124.549226654071,"CHH","Os02g0616450","exon","Os02g0616450","Hypothetical gene && sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica OX=39947 GN=AGO12 PE=2 SV=2 && -"]
[2,24393966,24394064,99,30,0.0976278280233689,0.173885560267831,-0.0762577322444621,-124.549226654071,"CHH","Os02g0616450","utr3","Os02g0616450","Hypothetical gene && sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica OX=39947 GN=AGO12 PE=2 SV=2 && -"]
[2,24393966,24394064,99,30,0.0976278280233689,0.173885560267831,-0.0762577322444621,-124.549226654071,"CHH","2:24393072:24395073","CGI_shore"]
[2,24427266,24427320,55,25,0.00959407572176658,0.0773842299971692,-0.0677901542754026,-125.960564275032,"CHH","2:24425568:24427569","CGI_shore"]
[2,24558840,24558905,66,6,0.211675101396323,0.524180387652658,-0.312505286256334,-28.6611126414493,"CHG","2:24557931:24560353","CGI"]
[2,24592700,24592789,90,26,0.566879127689132,0.806897010921236,-0.240017883232105,-108.297427000738,"CG","2:24590588:24632565","CGI"]
[2,24825220,24825297,78,26,0.00551157992028751,0.0743000429333743,-0.0687884630130867,-137.354694277248,"CHH","2:24823557:24825558","CGI_shore"]
[2,25040455,25040549,95,9,0.229495637474591,0.684441759341855,-0.454946121867264,-45.0113482651734,"CHG","2:25031460:25042261","CGI"]
[2,25930141,25930237,97,14,0.189979167550737,0.451230014569397,-0.26125084701866,-63.4067013785476,"CHG","2:25929212:25931212","CGI_shore"]
[2,27464823,27464893,71,25,0.0316752641596855,0.234170347468873,-0.202495083309187,-101.817988580982,"CHH","2:27464491:27466492","CGI_shore"]
[2,27496353,27496412,60,9,0.0417467638627162,0.253008078271197,-0.211261314408481,-33.9353402360038,"CHG","Os02g0674800","promoter","RICE OUTMOST CELL-SPECIFIC GENE 5","Similar to OCL1 homeobox protein && sp|Q6EPF0|ROC5_ORYSJ Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC5 PE=2 SV=1 && PF00046:Homeodomain|PF01852:START domain"]
[2,27496353,27496412,60,9,0.0417467638627162,0.253008078271197,-0.211261314408481,-33.9353402360038,"CHG","2:27495819:27497820","CGI_shore"]
[2,27618286,27618432,147,40,0.0512945079740367,0.244755619461281,-0.193461111487245,-200.580555742055,"CHH","2:27615837:27622320","CGI"]
[2,27903967,27904162,196,24,0.0986675479678667,0.37182680523453,-0.273159257266663,-139.555446479074,"CG","2:27903383:27905383","CGI_shore"]
[2,27903967,27904162,196,24,0.0986675479678667,0.37182680523453,-0.273159257266663,-139.555446479074,"CG","2:27903432:27904743","CGI"]
[2,28051836,28052030,195,40,0.540815835538345,0.824030647237464,-0.283214811699119,-192.1892594722,"CG","2:28022344:28065163","CGI"]
[2,28152248,28152403,156,42,0.0397453392084201,0.170529852379882,-0.130784513171462,-292.035033101109,"CHH","2:28150650:28162206","CGI"]
[2,28312503,28312595,93,10,0.0494270561437824,0.566550455102325,-0.517123398958543,-81.386146947187,"CHG","2:28311829:28315872","CGI"]
[2,28312506,28312606,101,18,0.0191824585409551,0.274599160508057,-0.255416701967102,-120.719112467378,"CHH","2:28311829:28315872","CGI"]
[2,28385909,28386044,136,18,0.547664968489803,0.844812653289654,-0.297147684799851,-82.5509925991131,"CG","2:28385678:28387678","CGI_shore"]
[2,28479585,28479906,322,26,0.276216266725697,0.556614308402704,-0.280398041677007,-133.510297190845,"CG","Os02g0693450","promoter","Os02g0693450","Hypothetical protein && sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana OX=3702 GN=UBP23 PE=2 SV=2 && -"]
[2,28479585,28479906,322,26,0.276216266725697,0.556614308402704,-0.280398041677007,-133.510297190845,"CG","2:28478597:28480598","CGI_shore"]
[2,28479585,28479906,322,26,0.276216266725697,0.556614308402704,-0.280398041677007,-133.510297190845,"CG","Os02g0693500","intron","Os02g0693500","Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein && sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana OX=3702 GN=At4g09580 PE=1 SV=1 && PF09335:SNARE associated Golgi protein"]
[2,28479585,28479906,322,26,0.276216266725697,0.556614308402704,-0.280398041677007,-133.510297190845,"CG","Os02g0693500","exon","Os02g0693500","Similar to OSIGBa0142I02-OSIGBa0101B20.17 protein && sp|Q8L586|Y4958_ARATH Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana OX=3702 GN=At4g09580 PE=1 SV=1 && PF09335:SNARE associated Golgi protein"]
[2,28519016,28519116,101,39,0.0442154296788401,0.117098876131279,-0.0728834464524388,-213.380613513718,"CHH","Os02g0694201","intron","Os02g0694201","Acyl-CoA N-acyltransferase domain containing protein && sp|Q9M8T9|MCC1_ARATH Histone acetyltransferase MCC1 OS=Arabidopsis thaliana OX=3702 GN=MCC1 PE=2 SV=1 && -"]
[2,28519016,28519116,101,39,0.0442154296788401,0.117098876131279,-0.0728834464524388,-213.380613513718,"CHH","2:28518922:28520922","CGI_shore"]
[2,28537712,28537805,94,5,0.223058537569355,0.547219620285938,-0.324161082716583,-23.4603727571446,"CG","2:28536432:28538432","CGI_shore"]
[2,28537712,28537805,94,5,0.223058537569355,0.547219620285938,-0.324161082716583,-23.4603727571446,"CG","Os02g0694600","promoter","Os02g0694600","Hypothetical conserved gene && - && -"]
[2,28972354,28972656,303,90,0.115876106509494,0.228176800908807,-0.112300694399313,-608.305920438543,"CG","Os02g0702800","promoter","Os02g0702800","Similar to Syntaxin 22 (AtSYP22) (AtVAM3) && sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana OX=3702 GN=SYP22 PE=1 SV=1 && PF05739:SNARE domain|PF14523:Syntaxin-like protein"]
[2,28972354,28972656,303,90,0.115876106509494,0.228176800908807,-0.112300694399313,-608.305920438543,"CG","2:28971606:28997968","CGI"]
[2,28972436,28972643,208,33,0.069279513736406,0.169424089853226,-0.10014457611682,-169.350282502332,"CHG","Os02g0702800","promoter","Os02g0702800","Similar to Syntaxin 22 (AtSYP22) (AtVAM3) && sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana OX=3702 GN=SYP22 PE=1 SV=1 && PF05739:SNARE domain|PF14523:Syntaxin-like protein"]
[2,28972436,28972643,208,33,0.069279513736406,0.169424089853226,-0.10014457611682,-169.350282502332,"CHG","2:28971606:28997968","CGI"]
[2,29221370,29221460,91,24,0.0534636405992986,0.139991993721319,-0.0865283531220208,-109.692855523549,"CHH","2:29220862:29222862","CGI_shore"]
[2,29402860,29402932,73,14,0.0681745402533938,0.208237686067669,-0.140063145814275,-82.6852979272906,"CHH","2:29401435:29403436","CGI_shore"]
[2,29402860,29402932,73,14,0.0681745402533938,0.208237686067669,-0.140063145814275,-82.6852979272906,"CHH","2:29401572:29403572","CGI_shore"]
[2,29405991,29406050,60,13,0.0225525212275472,0.103986828282676,-0.0814343070551291,-68.8878804555515,"CHH","2:29404208:29406208","CGI_shore"]
[2,29405991,29406050,60,13,0.0225525212275472,0.103986828282676,-0.0814343070551291,-68.8878804555515,"CHH","2:29404352:29406353","CGI_shore"]
[2,29475912,29475981,70,20,0.520604272869501,0.827183832166967,-0.306579559297466,-99.5891881547666,"CG","2:29464617:29482209","CGI"]
[2,29507960,29508249,290,34,0.644331550422733,0.836981513155712,-0.192649962732979,-184.734483816606,"CG","Os02g0712500","promoter","Os02g0712500","Protein of unknown function DUF23 family protein && sp|O22807|GALS1_ARATH Galactan beta-1,4-galactosyltransferase GALS1 OS=Arabidopsis thaliana OX=3702 GN=GALS1 PE=2 SV=2 && PF01697:Glycosyltransferase family 92"]
[2,29507960,29508249,290,34,0.644331550422733,0.836981513155712,-0.192649962732979,-184.734483816606,"CG","Os02g0712550","promoter","Os02g0712550","Conserved hypothetical protein && - && -"]
[2,29594364,29594479,116,19,0.0861976151501668,0.28839880174337,-0.202201186593203,-90.2292012926606,"CG","Os02g0714000","promoter","Os02g0714000","Similar to Yarrowia lipolytica chromosome C of strain CLIB99 of Yarrowia lipolytica && sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[2,29594364,29594479,116,19,0.0861976151501668,0.28839880174337,-0.202201186593203,-90.2292012926606,"CG","2:29594282:29595288","CGI"]
[2,29678692,29678788,97,16,0.308265040834472,0.657282023148579,-0.349016982314107,-86.9800239433276,"CG","2:29678290:29680291","CGI_shore"]
[2,30260720,30260853,134,40,0.515401251892233,0.77103103596492,-0.255629784072687,-183.789474149734,"CG","Os02g0727200","exon","Os02g0727200","Hypothetical gene && - && -"]
[2,30260720,30260853,134,40,0.515401251892233,0.77103103596492,-0.255629784072687,-183.789474149734,"CG","2:30230808:30266423","CGI"]
[2,30260720,30260853,134,40,0.515401251892233,0.77103103596492,-0.255629784072687,-183.789474149734,"CG","Os02g0727100","intron","amino acid transporter-like 3","Amino acid transporter, transmembrane domain containing protein && sp|Q9LI61|AVT6A_ARATH Amino acid transporter AVT6A OS=Arabidopsis thaliana OX=3702 GN=AVT6A PE=2 SV=1 && PF01490:Transmembrane amino acid transporter protein"]
[2,30632980,30633088,109,19,0.129413667719312,0.244871783717258,-0.115458115997947,-98.6583791505902,"CHH","2:30631645:30633646","CGI_shore"]
[2,30632980,30633088,109,19,0.129413667719312,0.244871783717258,-0.115458115997947,-98.6583791505902,"CHH","2:30631927:30633927","CGI_shore"]
[2,30813519,30813764,246,53,0.105931408678186,0.368382963311522,-0.262451554633336,-332.316736592244,"CG","2:30813283:30814592","CGI"]
[2,30813519,30813764,246,53,0.105931408678186,0.368382963311522,-0.262451554633336,-332.316736592244,"CG","Os02g0738300","exon","Os02g0738300","Conserved hypothetical protein && - && -"]
[2,30813519,30813764,246,53,0.105931408678186,0.368382963311522,-0.262451554633336,-332.316736592244,"CG","Os02g0738350","TES","Os02g0738350","Similar to JHL23J11.5 protein && - && -"]
[2,30813519,30813764,246,53,0.105931408678186,0.368382963311522,-0.262451554633336,-332.316736592244,"CG","Os02g0738350","exon","Os02g0738350","Similar to JHL23J11.5 protein && - && -"]
[2,30860019,30860238,220,65,0.0666154294815885,0.219732034143968,-0.153116604662379,-370.80180050042,"CHH","2:30858176:30860177","CGI_shore"]
[2,30860019,30860238,220,65,0.0666154294815885,0.219732034143968,-0.153116604662379,-370.80180050042,"CHH","2:30859092:30860585","CGI"]
[2,30860019,30860238,220,65,0.0666154294815885,0.219732034143968,-0.153116604662379,-370.80180050042,"CHH","Os02g0738950","promoter","Os02g0738950","Hypothetical gene && sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana OX=3702 GN=DRP2A PE=1 SV=2 && -"]
[2,30860039,30860154,116,34,0.685023391750877,0.832463967118414,-0.147440575367537,-127.040044539096,"CG","2:30858176:30860177","CGI_shore"]
[2,30860039,30860154,116,34,0.685023391750877,0.832463967118414,-0.147440575367537,-127.040044539096,"CG","2:30859092:30860585","CGI"]
[2,30860039,30860154,116,34,0.685023391750877,0.832463967118414,-0.147440575367537,-127.040044539096,"CG","Os02g0738950","promoter","Os02g0738950","Hypothetical gene && sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana OX=3702 GN=DRP2A PE=1 SV=2 && -"]
[2,30883329,30883562,234,28,0.243031069706998,0.421205518912972,-0.178174449205975,-137.70925248142,"CG","Os02g0739100","utr3","Os02g0739100","Similar to Formin-like protein 16 && sp|A3AB67|FH16_ORYSJ Formin-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=FH16 PE=2 SV=1 && -"]
[2,30883329,30883562,234,28,0.243031069706998,0.421205518912972,-0.178174449205975,-137.70925248142,"CG","Os02g0739100","exon","Os02g0739100","Similar to Formin-like protein 16 && sp|A3AB67|FH16_ORYSJ Formin-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=FH16 PE=2 SV=1 && -"]
[2,30883329,30883562,234,28,0.243031069706998,0.421205518912972,-0.178174449205975,-137.70925248142,"CG","2:30882957:30884957","CGI_shore"]
[2,31201317,31201410,94,20,0.0530415306771322,0.184604242500748,-0.131562711823616,-91.9540224936058,"CHH","Os02g0743900","promoter","Os02g0743900","Similar to plant integral membrane protein TIGR01569 containing protein && sp|Q6Z2U5|CASP4_ORYSJ Casparian strip membrane protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0743900 PE=3 SV=2 && PF04535:Domain of unknown function (DUF588)"]
[2,31201317,31201410,94,20,0.0530415306771322,0.184604242500748,-0.131562711823616,-91.9540224936058,"CHH","2:31199873:31201874","CGI_shore"]
[2,31201317,31201410,94,20,0.0530415306771322,0.184604242500748,-0.131562711823616,-91.9540224936058,"CHH","2:31199941:31201941","CGI_shore"]
[2,31201317,31201410,94,20,0.0530415306771322,0.184604242500748,-0.131562711823616,-91.9540224936058,"CHH","Os02g0744000","promoter","Os02g0744000","Similar to NDF6 (NDH DEPENDENT FLOW 6) && sp|Q8RXS1|PNSB4_ARATH Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1 && -"]
[2,31332775,31332861,87,20,0.0245170247813115,0.122134488250889,-0.097617463469578,-92.3046746455648,"CHH","2:31323868:31338336","CGI"]
[2,31332788,31332909,122,36,0.529660229848777,0.832606948825495,-0.302946718976717,-180.046110461468,"CG","2:31323868:31338336","CGI"]
[2,31333190,31333411,222,71,0.733925980319865,0.877608038010282,-0.143682057690417,-302.842921840436,"CG","2:31323868:31338336","CGI"]
[2,31458814,31458947,134,44,0.0176608670171088,0.0802402106326312,-0.0625793436155225,-201.888894625946,"CHH","2:31455310:31468411","CGI"]
[2,31499384,31499474,91,28,0.0218659736948942,0.082585677957647,-0.0607197042627528,-123.962040887996,"CHH","2:31497953:31499953","CGI_shore"]
[2,31499384,31499474,91,28,0.0218659736948942,0.082585677957647,-0.0607197042627528,-123.962040887996,"CHH","Os02g0749450","promoter","Os02g0749450","Similar to dolichol-phosphate mannosyltransferase-related && sp|Q8LEQ4|DPM3_ARATH Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=DPMS3 PE=1 SV=1 && -"]
[2,31545164,31545227,64,19,0.190275940016663,0.314206487033072,-0.123930547016409,-77.2775907375947,"CHH","2:31544206:31546206","CGI_shore"]
[2,31545164,31545227,64,19,0.190275940016663,0.314206487033072,-0.123930547016409,-77.2775907375947,"CHH","2:31544732:31546733","CGI_shore"]
[2,31691575,31691650,76,21,0.175668489644339,0.393103910517365,-0.217435420873025,-91.673494185007,"CHH","2:31690441:31692442","CGI_shore"]
[2,31804251,31804329,79,11,0.55525681719558,0.797496126885042,-0.242239309689462,-41.0309752309877,"CG","2:31803434:31805434","CGI_shore"]
[2,31804251,31804329,79,11,0.55525681719558,0.797496126885042,-0.242239309689462,-41.0309752309877,"CG","Os02g0755900","promoter","Os02g0755900","UDP-glucuronosyl/UDP-glucosyltransferase domain containing protein && sp|F8WKW1|UGT2_GARJA 7-deoxyloganetin glucosyltransferase OS=Gardenia jasminoides OX=114476 GN=UGT85A24 PE=1 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[2,32036869,32036924,56,9,0.474825032410438,0.839284744803586,-0.364459712393148,-39.9172066668422,"CG","2:32035185:32037186","CGI_shore"]
[2,32036869,32036924,56,9,0.474825032410438,0.839284744803586,-0.364459712393148,-39.9172066668422,"CG","2:32036026:32038026","CGI_shore"]
[2,32045956,32046111,156,40,0.0344443159839512,0.124150581205476,-0.0897062652215244,-194.138302031775,"CHH","2:32044657:32046657","CGI_shore"]
[2,32045956,32046111,156,40,0.0344443159839512,0.124150581205476,-0.0897062652215244,-194.138302031775,"CHH","Os02g0761100","promoter","CYCLOPHILIN 40B","Similar to Cyclophilin-40 (Expressed protein) && sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana OX=3702 GN=CYP40 PE=2 SV=1 && PF00160:Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD"]
[2,32148478,32148681,204,30,0.0895067035750809,0.631214301407653,-0.541707597832572,-274.849757800495,"CG","2:32134179:32246077","CGI"]
[2,32148479,32148682,204,13,0.0304057699794049,0.467396783752955,-0.43699101377355,-78.8346231534919,"CHG","2:32134179:32246077","CGI"]
[2,32211692,32211792,101,24,0.0106657017869071,0.190881403416222,-0.180215701629315,-136.551296430432,"CHH","2:32134179:32246077","CGI"]
[2,32251498,32251715,218,62,0.249520140481352,0.465262873932424,-0.215742733451072,-347.662422970752,"CHH","2:32249863:32251864","CGI_shore"]
[2,32251498,32251715,218,62,0.249520140481352,0.465262873932424,-0.215742733451072,-347.662422970752,"CHH","Os02g0765600","promoter","ALPHA-AMYLASE 1A","Alpha-amylase glycoprotein, Degradation of starch granul && sp|P17654|AMY1_ORYSJ Alpha-amylase OS=Oryza sativa subsp. japonica OX=39947 GN=AMY1.1 PE=1 SV=2 && PF00128:Alpha amylase, catalytic domain|PF07821:Alpha-amylase C-terminal beta-sheet domain"]
[2,32251498,32251715,218,62,0.249520140481352,0.465262873932424,-0.215742733451072,-347.662422970752,"CHH","2:32250341:32252341","CGI_shore"]
[2,32251498,32251715,218,62,0.249520140481352,0.465262873932424,-0.215742733451072,-347.662422970752,"CHH","2:32251380:32253380","CGI_shore"]
[2,32355591,32355660,70,11,0.292152619077336,0.674425097653313,-0.382272478575977,-52.1245966676175,"CG","2:32353970:32355970","CGI_shore"]
[2,32355591,32355660,70,11,0.292152619077336,0.674425097653313,-0.382272478575977,-52.1245966676175,"CG","Os02g0768200","intron","Os02g0768200","emp24/gp25L/p24 family protein && sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana OX=3702 GN=At1g09580 PE=1 SV=1 && -"]
[2,32355591,32355660,70,11,0.292152619077336,0.674425097653313,-0.382272478575977,-52.1245966676175,"CG","Os02g0768200","promoter","Os02g0768200","emp24/gp25L/p24 family protein && sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana OX=3702 GN=At1g09580 PE=1 SV=1 && -"]
[2,32975567,32975621,55,19,0.180265472758339,0.274021267995739,-0.0937557952374002,-98.393688900543,"CG","Os02g0778801","exon","Os02g0778801","Hypothetical conserved gene && - && -"]
[2,32975567,32975621,55,19,0.180265472758339,0.274021267995739,-0.0937557952374002,-98.393688900543,"CG","Os02g0778900","promoter","Os02g0778900","Peptidase S8, subtilisin-related domain containing protein && sp|Q9FLI4|SBT13_ARATH Subtilisin-like protease SBT1.3 OS=Arabidopsis thaliana OX=3702 GN=SBT1.3 PE=2 SV=1 && PF05922:Peptidase inhibitor I9"]
[2,32975567,32975621,55,19,0.180265472758339,0.274021267995739,-0.0937557952374002,-98.393688900543,"CG","Os02g0778800","exon","Os02g0778800","Hypothetical protein && - && -"]
[2,32975567,32975621,55,19,0.180265472758339,0.274021267995739,-0.0937557952374002,-98.393688900543,"CG","Os02g0778801","utr5","Os02g0778801","Hypothetical conserved gene && - && -"]
[2,32975567,32975621,55,19,0.180265472758339,0.274021267995739,-0.0937557952374002,-98.393688900543,"CG","2:32974847:32987967","CGI"]
[2,32975712,32975827,116,13,0.179276037324994,0.393503614437018,-0.214227577112024,-70.4833229469173,"CHG","Os02g0778801","exon","Os02g0778801","Hypothetical conserved gene && - && -"]
[2,32975712,32975827,116,13,0.179276037324994,0.393503614437018,-0.214227577112024,-70.4833229469173,"CHG","Os02g0778900","promoter","Os02g0778900","Peptidase S8, subtilisin-related domain containing protein && sp|Q9FLI4|SBT13_ARATH Subtilisin-like protease SBT1.3 OS=Arabidopsis thaliana OX=3702 GN=SBT1.3 PE=2 SV=1 && PF05922:Peptidase inhibitor I9"]
[2,32975712,32975827,116,13,0.179276037324994,0.393503614437018,-0.214227577112024,-70.4833229469173,"CHG","Os02g0778800","exon","Os02g0778800","Hypothetical protein && - && -"]
[2,32975712,32975827,116,13,0.179276037324994,0.393503614437018,-0.214227577112024,-70.4833229469173,"CHG","Os02g0778801","utr5","Os02g0778801","Hypothetical conserved gene && - && -"]
[2,32975712,32975827,116,13,0.179276037324994,0.393503614437018,-0.214227577112024,-70.4833229469173,"CHG","2:32974847:32987967","CGI"]
[2,33040115,33040236,122,40,0.0238451418199774,0.106274593345973,-0.0824294515259959,-222.213003255557,"CHH","2:33038794:33040795","CGI_shore"]
[2,33634958,33635082,125,21,0.654386995423346,0.885859304565006,-0.23147230914166,-88.2935905490723,"CG","2:33633167:33635352","CGI"]
[2,33634958,33635082,125,21,0.654386995423346,0.885859304565006,-0.23147230914166,-88.2935905490723,"CG","Os02g0791800","promoter","AUTOPHAGY ASSOCIATED GENE 18A","WD-40 repeat containing protein && sp|Q8H1Q8|AT18B_ARATH Autophagy-related protein 18b OS=Arabidopsis thaliana OX=3702 GN=ATG18B PE=2 SV=2 && -"]
[2,33634958,33635082,125,21,0.654386995423346,0.885859304565006,-0.23147230914166,-88.2935905490723,"CG","Os02g0792000","utr5","Os02g0792000","Hypothetical protein && - && -"]
[2,33634958,33635082,125,21,0.654386995423346,0.885859304565006,-0.23147230914166,-88.2935905490723,"CG","Os02g0792000","exon","Os02g0792000","Hypothetical protein && - && -"]
[2,33651634,33651761,128,28,0.00718598282941929,0.190913387726058,-0.183727404896639,-127.629060947602,"CHH","Os02g0792100","promoter","Os02g0792100","Conserved hypothetical protein && - && -"]
[2,33651634,33651761,128,28,0.00718598282941929,0.190913387726058,-0.183727404896639,-127.629060947602,"CHH","2:33651348:33653349","CGI_shore"]
[2,33770876,33770943,68,23,0.0350978986432622,0.160053228575089,-0.124955329931827,-116.659315394876,"CHH","2:33770018:33772019","CGI_shore"]
[2,33770876,33770943,68,23,0.0350978986432622,0.160053228575089,-0.124955329931827,-116.659315394876,"CHH","Os02g0794500","intron","TYPE IIB CARBOXYPEPTIDASE","Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A; Serine carboxypeptidase II chain B] && sp|Q9M099|SCP24_ARATH Serine carboxypeptidase 24 OS=Arabidopsis thaliana OX=3702 GN=SCPL24 PE=1 SV=1 && -"]
[2,33770876,33770943,68,23,0.0350978986432622,0.160053228575089,-0.124955329931827,-116.659315394876,"CHH","Os02g0794500","promoter","TYPE IIB CARBOXYPEPTIDASE","Similar to Serine carboxypeptidase II precursor (EC 3.4.16.6) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase II chain A; Serine carboxypeptidase II chain B] && sp|Q9M099|SCP24_ARATH Serine carboxypeptidase 24 OS=Arabidopsis thaliana OX=3702 GN=SCPL24 PE=1 SV=1 && -"]
[2,33854564,33854670,107,37,3.77820314929497E-3,0.0343598851518096,-0.0305816820025146,-159.378105667854,"CHH","Os02g0796300","exon","CCR4-associated factor 1H, carbon cataboliterepressor 4-associated factor 1H, CCR4-associated factor 1-1","Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Heat stress respons && sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 && PF04857:CAF1 family ribonuclease"]
[2,33854564,33854670,107,37,3.77820314929497E-3,0.0343598851518096,-0.0305816820025146,-159.378105667854,"CHH","2:33843255:33855174","CGI"]
[2,33929149,33929335,187,55,0.00842599116720245,0.113407912892406,-0.104981921725203,-286.229533304774,"CHH","2:33928742:33930743","CGI_shore"]
[2,33929149,33929335,187,55,0.00842599116720245,0.113407912892406,-0.104981921725203,-286.229533304774,"CHH","2:33929051:33931051","CGI_shore"]
[2,33977897,33978043,147,33,0.150564507198875,0.41843043505111,-0.267865927852234,-167.671667772257,"CG","Os02g0798200","exon","Os02g0798200","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 && PF13639:Ring finger domain"]
[2,33977897,33978043,147,33,0.150564507198875,0.41843043505111,-0.267865927852234,-167.671667772257,"CG","2:33977946:33979946","CGI_shore"]
[2,33977897,33978043,147,33,0.150564507198875,0.41843043505111,-0.267865927852234,-167.671667772257,"CG","Os02g0798200","utr3","Os02g0798200","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 && PF13639:Ring finger domain"]
[2,34064208,34064307,100,8,0.321596736436697,0.628971803227975,-0.307375066791278,-38.7013393990633,"CHG","2:34063804:34065805","CGI_shore"]
[2,34292995,34293101,107,29,0.00904644720477449,0.130797678367332,-0.121751231162558,-135.679440302277,"CHH","2:34292297:34294297","CGI_shore"]
[2,34292995,34293101,107,29,0.00904644720477449,0.130797678367332,-0.121751231162558,-135.679440302277,"CHH","2:34291559:34293560","CGI_shore"]
[2,34499680,34499817,138,20,0.0356980304807729,0.324756787577861,-0.289058757097088,-116.370423334318,"CHH","2:34497802:34499802","CGI_shore"]
[2,34499680,34499817,138,20,0.0356980304807729,0.324756787577861,-0.289058757097088,-116.370423334318,"CHH","2:34499803:34500689","CGI"]
[2,34768267,34768455,189,67,0.593678524415762,0.809732448852817,-0.216053924437055,-299.908842620596,"CG","Os02g0812000","promoter","Os02g0812000","NAD(P)-binding domain containing protein && sp|Q6K9A2|CCR1_ORYSJ Cinnamoyl-CoA reductase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCR1 PE=1 SV=1 && PF01370:NAD dependent epimerase/dehydratase family"]
[2,34768267,34768455,189,67,0.593678524415762,0.809732448852817,-0.216053924437055,-299.908842620596,"CG","Os02g0811902","exon","Os02g0811902","Hypothetical protein && - && -"]
[2,34768267,34768455,189,67,0.593678524415762,0.809732448852817,-0.216053924437055,-299.908842620596,"CG","Os02g0811902","utr5","Os02g0811902","Hypothetical protein && - && -"]
[2,34768267,34768455,189,67,0.593678524415762,0.809732448852817,-0.216053924437055,-299.908842620596,"CG","Os02g0811902","TSS","Os02g0811902","Hypothetical protein && - && -"]
[2,34768267,34768455,189,67,0.593678524415762,0.809732448852817,-0.216053924437055,-299.908842620596,"CG","Os02g0811902","promoter","Os02g0811902","Hypothetical protein && - && -"]
[2,34768267,34768455,189,67,0.593678524415762,0.809732448852817,-0.216053924437055,-299.908842620596,"CG","2:34717783:34778447","CGI"]
[2,35019035,35019295,261,70,0.0288788753913359,0.285803053297692,-0.256924177906356,-689.327739198227,"CHH","2:35018465:35020466","CGI_shore"]
[2,35074093,35074282,190,15,0.34329885461067,0.631892101344992,-0.288593246734321,-87.6030820389688,"CG","2:35073367:35075367","CGI_shore"]
[2,35074093,35074282,190,15,0.34329885461067,0.631892101344992,-0.288593246734321,-87.6030820389688,"CG","Os02g0817600","intron","IAA10","AUX/IAA protein family protein && sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA10 PE=2 SV=2 && PF02309:AUX/IAA family"]
[2,35074093,35074282,190,15,0.34329885461067,0.631892101344992,-0.288593246734321,-87.6030820389688,"CG","Os02g0817600","exon","IAA10","AUX/IAA protein family protein && sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA10 PE=2 SV=2 && PF02309:AUX/IAA family"]
[2,35074512,35074678,167,18,0.38207662342443,0.626221213611194,-0.244144590186764,-86.1214642632241,"CG","2:35073367:35075367","CGI_shore"]
[2,35074512,35074678,167,18,0.38207662342443,0.626221213611194,-0.244144590186764,-86.1214642632241,"CG","Os02g0817600","intron","IAA10","AUX/IAA protein family protein && sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA10 PE=2 SV=2 && PF02309:AUX/IAA family"]
[2,35074512,35074678,167,18,0.38207662342443,0.626221213611194,-0.244144590186764,-86.1214642632241,"CG","Os02g0817600","exon","IAA10","AUX/IAA protein family protein && sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA10 PE=2 SV=2 && PF02309:AUX/IAA family"]
[2,35077775,35077838,64,16,0.0127978314419325,0.210903059173687,-0.198105227731755,-88.0267636269729,"CHH","Os02g0817600","promoter","IAA10","AUX/IAA protein family protein && sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA10 PE=2 SV=2 && PF02309:AUX/IAA family"]
[2,35077775,35077838,64,16,0.0127978314419325,0.210903059173687,-0.198105227731755,-88.0267636269729,"CHH","2:35077428:35079428","CGI_shore"]
[2,35082285,35082408,124,40,0.00594207552260308,0.0640584096249685,-0.0581163341023654,-197.036129584932,"CHH","Os02g0817700","intron","3-ketoacyl-CoA thiolase, 3-ketoacyl-CoA thiolase-like protein","Similar to 3-ketoacyl-CoA thiolase (Fragment) && sp|Q56WD9|THIK2_ARATH 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=PED1 PE=1 SV=2 && PF00108:Thiolase, N-terminal domain|PF02803:Thiolase, C-terminal domain"]
[2,35118680,35118777,98,27,0.340562238362098,0.582736218773607,-0.242173980411509,-144.210731765961,"CG","2:35117472:35119473","CGI_shore"]
[2,35118680,35118777,98,27,0.340562238362098,0.582736218773607,-0.242173980411509,-144.210731765961,"CG","2:35117503:35119503","CGI_shore"]
[2,35118680,35118777,98,27,0.340562238362098,0.582736218773607,-0.242173980411509,-144.210731765961,"CG","Os02g0818500","exon","Os02g0818500","Non-protein coding transcript && - && PF18052:Rx N-terminal domain"]
[2,35118680,35118777,98,27,0.340562238362098,0.582736218773607,-0.242173980411509,-144.210731765961,"CG","Os02g0818500","utr5","Os02g0818500","Non-protein coding transcript && - && PF18052:Rx N-terminal domain"]
[2,35118680,35118777,98,27,0.340562238362098,0.582736218773607,-0.242173980411509,-144.210731765961,"CG","Os02g0818500","TSS","Os02g0818500","Non-protein coding transcript && - && PF18052:Rx N-terminal domain"]
[2,35118680,35118777,98,27,0.340562238362098,0.582736218773607,-0.242173980411509,-144.210731765961,"CG","Os02g0818500","promoter","Os02g0818500","Non-protein coding transcript && - && PF18052:Rx N-terminal domain"]
[2,35174031,35174124,94,18,0.127124771893845,0.416346574327052,-0.289221802433207,-106.834947099053,"CG","2:35172662:35174662","CGI_shore"]
[2,35174031,35174124,94,18,0.127124771893845,0.416346574327052,-0.289221802433207,-106.834947099053,"CG","Os02g0819400","intron","LOW PHYTIC ACID 1","Phytic acid metabolis && sp|B9F4I8|LPA1_ORYSJ P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPA1 PE=2 SV=1 && -"]
[2,35174031,35174124,94,18,0.127124771893845,0.416346574327052,-0.289221802433207,-106.834947099053,"CG","Os02g0819450","intron","Os02g0819450","Hypothetical protein && sp|B9F4I8|LPA1_ORYSJ P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica OX=39947 GN=LPA1 PE=2 SV=1 && -"]
[2,35368177,35368250,74,12,0.424980636641508,0.812458030384435,-0.387477393742927,-95.6889312987255,"CG","Os02g0823300","exon","RING finger protein","Similar to Neuralized protein && - && PF13920:Zinc finger, C3HC4 type (RING finger)"]
[2,35443332,35443415,84,31,0.108338058546785,0.261566957282777,-0.153228898735992,-139.603584676422,"CG","Os02g0825301","promoter","F-box protein 122","Hypothetical conserved gene && - && -"]
[2,35443332,35443415,84,31,0.108338058546785,0.261566957282777,-0.153228898735992,-139.603584676422,"CG","2:35443052:35443652","CGI"]
[2,35454772,35454862,91,18,0.305618120944201,0.506420910416993,-0.200802789472792,-83.9039488506838,"CG","Os02g0825600","utr3","Os02g0825600","Similar to signal peptide peptidase family protein && sp|Q6ZGL9|SIP1_ORYSJ Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPP1 PE=2 SV=1 && -"]
[2,35454772,35454862,91,18,0.305618120944201,0.506420910416993,-0.200802789472792,-83.9039488506838,"CG","Os02g0825600","exon","Os02g0825600","Similar to signal peptide peptidase family protein && sp|Q6ZGL9|SIP1_ORYSJ Signal peptide peptidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPP1 PE=2 SV=1 && -"]
[2,35467439,35467499,61,19,0.434267674122323,0.674017241392761,-0.239749567270438,-93.5680566003256,"CHG","2:35465769:35467770","CGI_shore"]
[2,35467439,35467499,61,19,0.434267674122323,0.674017241392761,-0.239749567270438,-93.5680566003256,"CHG","2:35466445:35468445","CGI_shore"]
[2,35467439,35467499,61,19,0.434267674122323,0.674017241392761,-0.239749567270438,-93.5680566003256,"CHG","2:35466640:35467584","CGI"]
[2,35467439,35467499,61,19,0.434267674122323,0.674017241392761,-0.239749567270438,-93.5680566003256,"CHG","Os02g0825650","intron","Os02g0825650","Hypothetical conserved gene && - && -"]
[2,35468832,35468887,56,6,0.517580676353425,0.693434772550991,-0.175854096197566,-34.569389638198,"CHG","2:35467584:35469585","CGI_shore"]
[2,35468832,35468887,56,6,0.517580676353425,0.693434772550991,-0.175854096197566,-34.569389638198,"CHG","2:35468446:35469028","CGI"]
[2,35468832,35468887,56,6,0.517580676353425,0.693434772550991,-0.175854096197566,-34.569389638198,"CHG","Os02g0825650","intron","Os02g0825650","Hypothetical conserved gene && - && -"]
[2,35572194,35572276,83,19,0.0708494046142332,0.213756139657589,-0.142906735043356,-96.5574101859924,"CHH","Os02g0827600","promoter","Os02g0827600","Protein of unknown function DUF3531 domain containing protein && - && PF12049:Protein of unknown function (DUF3531)"]
[2,35572194,35572276,83,19,0.0708494046142332,0.213756139657589,-0.142906735043356,-96.5574101859924,"CHH","2:35572072:35574073","CGI_shore"]
[2,35715870,35715928,59,19,0.0147369112945474,0.123748862252003,-0.109011950957455,-105.325296177142,"CHH","Os02g0830801","promoter","Os02g0830801","Similar to binding && - && PF14228:Cell morphogenesis central region|PF14222:Cell morphogenesis N-terminal"]
[2,35715870,35715928,59,19,0.0147369112945474,0.123748862252003,-0.109011950957455,-105.325296177142,"CHH","2:35715878:35717878","CGI_shore"]
[2,35853413,35853532,120,15,0.00611226322462963,0.20268634995047,-0.19657408672584,-99.1505045539999,"CHH","Os02g0833600","TES","b-ZIP TRANSCRIPTION FACTOR 24","Similar to Basic leucine zipper transcription factor (Fragment) && - && PF00170:bZIP transcription factor"]
[2,35853413,35853532,120,15,0.00611226322462963,0.20268634995047,-0.19657408672584,-99.1505045539999,"CHH","Os02g0833600","utr3","b-ZIP TRANSCRIPTION FACTOR 24","Similar to Basic leucine zipper transcription factor (Fragment) && - && PF00170:bZIP transcription factor"]
[2,35853413,35853532,120,15,0.00611226322462963,0.20268634995047,-0.19657408672584,-99.1505045539999,"CHH","Os02g0833600","exon","b-ZIP TRANSCRIPTION FACTOR 24","Similar to Basic leucine zipper transcription factor (Fragment) && - && PF00170:bZIP transcription factor"]
[3,111975,112093,119,11,0.424371646491248,0.663690255116697,-0.239318608625449,-52.6763695516776,"CG","3:111173:113174","CGI_shore"]
[3,111975,112093,119,11,0.424371646491248,0.663690255116697,-0.239318608625449,-52.6763695516776,"CG","Os03g0101200","exon","RECEPTOR-LIKE CYTOPLASMIC KINASE 93","Similar to U-box domain containing protein, expressed && sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 && PF04564:U-box domain|PF00069:Protein kinase domain"]
[3,196666,196860,195,56,0.0223706610942704,0.0992608254870544,-0.0768901643927841,-347.34796862744,"CG","3:196653:197752","CGI"]
[3,947297,947472,176,5,0.0973664191125618,0.587028327286582,-0.48966190817402,-25.1465020789686,"CG","3:946784:948785","CGI_shore"]
[3,947297,947472,176,5,0.0973664191125618,0.587028327286582,-0.48966190817402,-25.1465020789686,"CG","Os03g0116800","intron","Os_F0716","Similar to F-box protein && sp|Q8LG03|FB345_ARATH F-box protein At4g00755 OS=Arabidopsis thaliana OX=3702 GN=At4g00755 PE=2 SV=1 && -"]
[3,947297,947472,176,5,0.0973664191125618,0.587028327286582,-0.48966190817402,-25.1465020789686,"CG","Os03g0116850","intron","Os03g0116850","Hypothetical gene && sp|Q8LG03|FB345_ARATH F-box protein At4g00755 OS=Arabidopsis thaliana OX=3702 GN=At4g00755 PE=2 SV=1 && -"]
[3,1106720,1106821,102,36,0.0712871880508223,0.194399771792434,-0.123112583741612,-190.31484345651,"CG","3:1106262:1108536","CGI"]
[3,1106720,1106821,102,36,0.0712871880508223,0.194399771792434,-0.123112583741612,-190.31484345651,"CG","Os03g0120100","promoter","Os03g0120100","Protein of unknown function DUF284, transmembrane eukaryotic family protein && sp|Q8L8W0|ALIS5_ARATH ALA-interacting subunit 5 OS=Arabidopsis thaliana OX=3702 GN=ALIS5 PE=1 SV=1 && PF03381:LEM3 (ligand-effect modulator 3) family / CDC50 family"]
[3,1206766,1206884,119,30,0.0123547188879321,0.154415140104097,-0.142060421216165,-146.508493660272,"CHH","Os03g0121800","promoter","DICER-LIKE 1","Dicer-like protein, miRNA biogenesis, Reguration of developmen && sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1 && -"]
[3,1206766,1206884,119,30,0.0123547188879321,0.154415140104097,-0.142060421216165,-146.508493660272,"CHH","3:1205851:1207852","CGI_shore"]
[3,1310285,1310338,54,5,0.205097510855564,0.383515025937718,-0.178417515082154,-25.3654370501447,"CHG","3:1310095:1310549","CGI"]
[3,1560509,1560637,129,35,0.0125143931515045,0.0459255826858962,-0.0334111895343918,-182.093651357522,"CHH","Os03g0127600","promoter","Os03g0127600","Forkhead-associated domain containing protein && - && PF00498:FHA domain"]
[3,1560509,1560637,129,35,0.0125143931515045,0.0459255826858962,-0.0334111895343918,-182.093651357522,"CHH","3:1559293:1561293","CGI_shore"]
[3,1560509,1560637,129,35,0.0125143931515045,0.0459255826858962,-0.0334111895343918,-182.093651357522,"CHH","3:1559314:1561315","CGI_shore"]
[3,1560509,1560637,129,35,0.0125143931515045,0.0459255826858962,-0.0334111895343918,-182.093651357522,"CHH","Os03g0127700","promoter","Os03g0127700","Serine/threonine protein kinase-related domain containing protein && sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana OX=3702 GN=At1g12460 PE=1 SV=1 && -"]
[3,1626502,1626554,53,5,0.680041523692209,0.901590538657419,-0.221549014965211,-28.2836173928679,"CG","3:1625364:1627365","CGI_shore"]
[3,1626502,1626554,53,5,0.680041523692209,0.901590538657419,-0.221549014965211,-28.2836173928679,"CG","Os03g0128700","exon","CALCIUM-DEPENDENT PROTEIN KINASE 7","Calcium-dependent protein kinase, isoform 11 (EC 2.7.1.-) (CDPK 11) && sp|P53684|CDPK7_ORYSJ Calcium-dependent protein kinase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK7 PE=2 SV=2 && PF00069:Protein kinase domain|PF13499:EF-hand domain pair"]
[3,1626609,1626706,98,7,0.526365925450423,0.756110025606196,-0.229744100155773,-34.6451454023522,"CG","3:1625364:1627365","CGI_shore"]
[3,1626609,1626706,98,7,0.526365925450423,0.756110025606196,-0.229744100155773,-34.6451454023522,"CG","Os03g0128700","exon","CALCIUM-DEPENDENT PROTEIN KINASE 7","Calcium-dependent protein kinase, isoform 11 (EC 2.7.1.-) (CDPK 11) && sp|P53684|CDPK7_ORYSJ Calcium-dependent protein kinase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK7 PE=2 SV=2 && PF00069:Protein kinase domain|PF13499:EF-hand domain pair"]
[3,1796662,1796715,54,6,0.308873822733844,0.558032945921178,-0.249159123187334,-36.8130937754078,"CG","3:1795860:1798127","CGI"]
[3,1796662,1796715,54,6,0.308873822733844,0.558032945921178,-0.249159123187334,-36.8130937754078,"CG","Os03g0131300","promoter","Os03g0131300","Ubiquilin domain containing protein && sp|Q9SII9|DSK2A_ARATH Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana OX=3702 GN=DSK2A PE=1 SV=2 && PF00627:UBA/TS-N domain|PF00240:Ubiquitin family"]
[3,1912447,1912528,82,11,0.448619742745181,0.66564747192784,-0.217027729182659,-42.0309372085759,"CHG","Os03g0134300","intron","Os03g0134300","Similar to ATP phosphoribosyl transferase && sp|Q10S55|HIS1_ORYSJ ATP phosphoribosyltransferase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0134300 PE=3 SV=1 && PF08029:HisG, C-terminal domain|PF01634:ATP phosphoribosyltransferase"]
[3,1912447,1912528,82,11,0.448619742745181,0.66564747192784,-0.217027729182659,-42.0309372085759,"CHG","3:1911374:1916008","CGI"]
[3,1961755,1961854,100,22,0.117636014258705,0.530940688642039,-0.413304674383333,-174.221124240627,"CHH","3:1959243:1965460","CGI"]
[3,1961755,1961854,100,22,0.117636014258705,0.530940688642039,-0.413304674383333,-174.221124240627,"CHH","Os03g0135400","promoter","F-box protein 128","Cyclin-like F-box domain containing protein && sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana OX=3702 GN=FBL10 PE=2 SV=1 && -"]
[3,2220337,2220476,140,8,0.352171359728785,0.700766892884619,-0.348595533155835,-43.0081684915548,"CG","3:2218852:2220853","CGI_shore"]
[3,2220337,2220476,140,8,0.352171359728785,0.700766892884619,-0.348595533155835,-43.0081684915548,"CG","3:2219866:2221867","CGI_shore"]
[3,2280578,2280717,140,50,0.0100092477824508,0.0814326942208981,-0.0714234464384473,-265.253692970258,"CHH","3:2272377:2292507","CGI"]
[3,2365451,2365575,125,22,0.696352853081262,0.874618426018742,-0.17826557293748,-103.25403235034,"CG","3:2364611:2366611","CGI_shore"]
[3,2365451,2365575,125,22,0.696352853081262,0.874618426018742,-0.17826557293748,-103.25403235034,"CG","3:2365250:2365575","CGI"]
[3,2369252,2369391,140,23,0.26936287243424,0.471128854265134,-0.201765981830893,-118.564140375699,"CG","3:2366612:2369392","CGI"]
[3,2369252,2369391,140,23,0.26936287243424,0.471128854265134,-0.201765981830893,-118.564140375699,"CG","Os03g0142800","exon","MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 13","Similar to MRP-like ABC transporter && sp|A2XCD4|AB13C_ORYSI ABC transporter C family member 13 OS=Oryza sativa subsp. indica OX=39946 GN=ABCC13 PE=3 SV=1 && PF00005:ABC transporter|PF00664:ABC transporter transmembrane region"]
[3,2464108,2464428,321,48,0.054659099874039,0.331077929182012,-0.276418829307973,-310.59133395881,"CG","3:2463902:2464451","CGI"]
[3,2941166,2941262,97,10,0.113554346182144,0.34275000954904,-0.229195663366896,-48.7835356599562,"CHG","Os03g0153100","intron","Os03g0153100","Similar to FAD binding domain containing protein, expressed && sp|O81816|MO2_ARATH Monooxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=MO2 PE=2 SV=1 && PF01494:FAD binding domain"]
[3,2941166,2941262,97,10,0.113554346182144,0.34275000954904,-0.229195663366896,-48.7835356599562,"CHG","3:2939348:2943094","CGI"]
[3,2941361,2941412,52,4,0.067995312441866,0.316624604192093,-0.248629291750227,-18.4039200780014,"CHG","Os03g0153100","intron","Os03g0153100","Similar to FAD binding domain containing protein, expressed && sp|O81816|MO2_ARATH Monooxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=MO2 PE=2 SV=1 && PF01494:FAD binding domain"]
[3,2941361,2941412,52,4,0.067995312441866,0.316624604192093,-0.248629291750227,-18.4039200780014,"CHG","3:2939348:2943094","CGI"]
[3,3244955,3245046,92,8,0.0784665377325156,0.490040886832263,-0.411574349099747,-35.1898980680372,"CG","3:3244292:3246292","CGI_shore"]
[3,3253285,3253340,56,12,0.536075352690603,0.801646130967879,-0.265570778277275,-56.2674299859495,"CG","3:3251522:3254486","CGI"]
[3,3253285,3253340,56,12,0.536075352690603,0.801646130967879,-0.265570778277275,-56.2674299859495,"CG","Os03g0161000","promoter","Os03g0161000","Conserved hypothetical protein && - && -"]
[3,3253285,3253340,56,12,0.536075352690603,0.801646130967879,-0.265570778277275,-56.2674299859495,"CG","Os03g0161000","utr5","Os03g0161000","Conserved hypothetical protein && - && -"]
[3,3253285,3253340,56,12,0.536075352690603,0.801646130967879,-0.265570778277275,-56.2674299859495,"CG","Os03g0161000","exon","Os03g0161000","Conserved hypothetical protein && - && -"]
[3,3400586,3400658,73,7,0.157677134245611,0.574317148557182,-0.416640014311571,-32.3421491601824,"CHG","Os03g0162650","promoter","Os03g0162650","Similar to fatty acid elongase && sp|Q7XEM4|KCS20_ORYSJ Probable 3-ketoacyl-CoA synthase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=KCS20 PE=1 SV=1 && PF08392:FAE1/Type III polyketide synthase-like protein"]
[3,3557589,3557727,139,26,0.260527282429234,0.517156153064748,-0.256628870635514,-132.766195430076,"CHG","3:3556096:3558096","CGI_shore"]
[3,3557589,3557727,139,26,0.260527282429234,0.517156153064748,-0.256628870635514,-132.766195430076,"CHG","Os03g0165900","promoter","Os03g0165900","Tetratricopeptide-like helical domain containing protein && sp|Q8L730|SDI2_ARATH Protein SULFUR DEFICIENCY-INDUCED 2 OS=Arabidopsis thaliana OX=3702 GN=At1g04770 PE=2 SV=1 && -"]
[3,3557589,3557727,139,26,0.260527282429234,0.517156153064748,-0.256628870635514,-132.766195430076,"CHG","3:3556862:3558863","CGI_shore"]
[3,3557589,3557727,139,26,0.260527282429234,0.517156153064748,-0.256628870635514,-132.766195430076,"CHG","Os03g0165900","intron","Os03g0165900","Tetratricopeptide-like helical domain containing protein && sp|Q8L730|SDI2_ARATH Protein SULFUR DEFICIENCY-INDUCED 2 OS=Arabidopsis thaliana OX=3702 GN=At1g04770 PE=2 SV=1 && -"]
[3,3574216,3574363,148,22,0.462315351964165,0.71751969055887,-0.255204338594705,-109.896667325483,"CHG","3:3573863:3575864","CGI_shore"]
[3,3651941,3652005,65,28,0.0277411935485719,0.169004105412253,-0.141262911863681,-193.043729985334,"CHH","Os03g0167600","promoter","MALE STERILITY 2, male sterility protein 2, defective pollen wall","Similar to Male sterility protein 2 && sp|Q08891|FACR2_ARATH Fatty acyl-CoA reductase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FAR2 PE=1 SV=2 && PF03015:Male sterility protein|PF07993:Male sterility protein"]
[3,3707559,3707742,184,43,0.135047028410486,0.443008812813453,-0.307961784402967,-298.512510976044,"CG","Os03g0168700","promoter","SET protein 14","SET domain containing protein && - && PF00856:SET domain"]
[3,3707559,3707742,184,43,0.135047028410486,0.443008812813453,-0.307961784402967,-298.512510976044,"CG","Os03g0168800","intron","Os03g0168800","Hypothetical conserved gene && - && PF12620:Protein of unknown function (DUF3778)"]
[3,3707559,3707742,184,43,0.135047028410486,0.443008812813453,-0.307961784402967,-298.512510976044,"CG","Os03g0168800","exon","Os03g0168800","Hypothetical conserved gene && - && PF12620:Protein of unknown function (DUF3778)"]
[3,3707559,3707742,184,43,0.135047028410486,0.443008812813453,-0.307961784402967,-298.512510976044,"CG","3:3700943:3711497","CGI"]
[3,3852610,3852758,149,27,0.0122053430042525,0.365303782829389,-0.353098439825137,-252.711553288274,"CHH","3:3851007:3853008","CGI_shore"]
[3,3852610,3852758,149,27,0.0122053430042525,0.365303782829389,-0.353098439825137,-252.711553288274,"CHH","3:3851530:3853531","CGI_shore"]
[3,3852610,3852758,149,27,0.0122053430042525,0.365303782829389,-0.353098439825137,-252.711553288274,"CHH","3:3852238:3854238","CGI_shore"]
[3,3852610,3852758,149,27,0.0122053430042525,0.365303782829389,-0.353098439825137,-252.711553288274,"CHH","Os03g0171900","promoter","Os03g0171900","Similar to Alanine:glyoxylate aminotransferase-like protein (Fragment) && sp|Q940M2|AGT21_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=AGT2 PE=1 SV=1 && PF00202:Aminotransferase class-III"]
[3,4095392,4095456,65,9,0.175188841310666,0.265213176694051,-0.090024335383385,-33.9277751020265,"CG","Os03g0177400","exon","ELONGATION FACTOR 1A1","EF-1 alpha && sp|O64937|EF1A_ORYSJ Elongation factor 1-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=REFA1 PE=2 SV=2 && PF03144:Elongation factor Tu domain 2|PF03143:Elongation factor Tu C-terminal domain|PF00009:Elongation factor Tu GTP binding domain"]
[3,4095392,4095456,65,9,0.175188841310666,0.265213176694051,-0.090024335383385,-33.9277751020265,"CG","3:4095237:4095480","CGI"]
[3,4095392,4095456,65,9,0.175188841310666,0.265213176694051,-0.090024335383385,-33.9277751020265,"CG","3:4094720:4096721","CGI_shore"]
[3,4454412,4454568,157,69,0.0189928690832257,0.132058925031026,-0.1130660559478,-338.763895071583,"CHH","3:4449447:4454865","CGI"]
[3,4466254,4466310,57,19,0.00697806123930997,0.0848804891916673,-0.0779024279523573,-74.9251058777365,"CHH","3:4465125:4467126","CGI_shore"]
[3,4466254,4466310,57,19,0.00697806123930997,0.0848804891916673,-0.0779024279523573,-74.9251058777365,"CHH","3:4465515:4467515","CGI_shore"]
[3,4480724,4480831,108,21,0.22909901314049,0.576929480014803,-0.347830466874313,-102.850262825112,"CHG","Os03g0185400","exon","Os03g0185400","Protein of unknown function DUF1677, Oryza sativa family protein && - && PF07893:Protein of unknown function (DUF1668)"]
[3,4480724,4480831,108,21,0.22909901314049,0.576929480014803,-0.347830466874313,-102.850262825112,"CHG","3:4479813:4483526","CGI"]
[3,4676039,4676119,81,12,0.29123389459759,0.557557812607559,-0.266323918009969,-58.9644782508036,"CHG","Os03g0189400","intron","Os03g0189400","Similar to Alcohol dehydrogenase ADH && sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana OX=3702 GN=At5g42250 PE=2 SV=1 && PF00107:Zinc-binding dehydrogenase|PF08240:Alcohol dehydrogenase GroES-like domain"]
[3,4694011,4694071,61,5,0.384176101215672,0.628107847606337,-0.243931746390665,-23.3134299944814,"CG","3:4692591:4694591","CGI_shore"]
[3,4694011,4694071,61,5,0.384176101215672,0.628107847606337,-0.243931746390665,-23.3134299944814,"CG","Os03g0190000","promoter","Os03g0190000","VQ domain containing protein && - && PF05678:VQ motif"]
[3,4694011,4694071,61,5,0.384176101215672,0.628107847606337,-0.243931746390665,-23.3134299944814,"CG","3:4692943:4694944","CGI_shore"]
[3,4742033,4742099,67,16,0.00529718553855933,0.104709324606203,-0.0994121390676436,-87.0191185218245,"CHH","3:4740574:4751243","CGI"]
[3,4742033,4742099,67,16,0.00529718553855933,0.104709324606203,-0.0994121390676436,-87.0191185218245,"CHH","Os03g0191100","promoter","Os03g0191100","Mitochondrial carrier protein domain containing protein && sp|Q9LV81|BRTL3_ARATH Probable mitochondrial adenine nucleotide transporter BTL3 OS=Arabidopsis thaliana OX=3702 GN=At5g64970 PE=2 SV=1 && -"]
[3,4816535,4816742,208,22,0.29346424428844,0.550936619030433,-0.257472374741994,-123.343896150728,"CG","Os03g0192500","exon","Protein phosphatase 45","Sporulation stage II, protein E C-terminal domain containing protein && sp|Q10QL5|BIP2C_ORYSJ Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. japonica OX=39947 GN=BIPP2C1 PE=2 SV=1 && PF07228:Stage II sporulation protein E (SpoIIE)"]
[3,4816535,4816742,208,22,0.29346424428844,0.550936619030433,-0.257472374741994,-123.343896150728,"CG","3:4816346:4816645","CGI"]
[3,4816535,4816742,208,22,0.29346424428844,0.550936619030433,-0.257472374741994,-123.343896150728,"CG","3:4815807:4817808","CGI_shore"]
[3,4816535,4816742,208,22,0.29346424428844,0.550936619030433,-0.257472374741994,-123.343896150728,"CG","3:4816645:4818646","CGI_shore"]
[3,4816535,4816742,208,22,0.29346424428844,0.550936619030433,-0.257472374741994,-123.343896150728,"CG","Os03g0192500","intron","Protein phosphatase 45","Sporulation stage II, protein E C-terminal domain containing protein && sp|Q10QL5|BIP2C_ORYSJ Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. japonica OX=39947 GN=BIPP2C1 PE=2 SV=1 && PF07228:Stage II sporulation protein E (SpoIIE)"]
[3,5268090,5268186,97,10,0.131679303799151,0.440622287467724,-0.308942983668573,-42.6013800706914,"CHG","3:5268126:5270126","CGI_shore"]
[3,5455492,5455633,142,32,0.0806433664412417,0.225393366659619,-0.144750000218378,-159.978520360322,"CHH","3:5451077:5459952","CGI"]
[3,5667962,5668032,71,16,0.0181374669165244,0.0968271824143882,-0.0786897154978638,-70.858608580458,"CHH","3:5667002:5669002","CGI_shore"]
[3,5667962,5668032,71,16,0.0181374669165244,0.0968271824143882,-0.0786897154978638,-70.858608580458,"CHH","3:5667098:5669099","CGI_shore"]
[3,5667962,5668032,71,16,0.0181374669165244,0.0968271824143882,-0.0786897154978638,-70.858608580458,"CHH","Os03g0208600","promoter","Os03g0208600","Pentatricopeptide repeat domain containing protein && sp|Q9FZ19|PPR5_ARATH Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana OX=3702 GN=At1g02420 PE=3 SV=2 && PF13041:PPR repeat family"]
[3,5795480,5795553,74,28,0.0783199701449736,0.222256563799962,-0.143936593654989,-137.439932598435,"CG","Os03g0210900","promoter","Os03g0210900","Similar to predicted protein && - && -"]
[3,5795480,5795553,74,28,0.0783199701449736,0.222256563799962,-0.143936593654989,-137.439932598435,"CG","3:5795228:5796938","CGI"]
[3,5991890,5992028,139,19,0.372569039034671,0.655321509823043,-0.282752470788372,-102.683809762316,"CG","3:5991168:5993169","CGI_shore"]
[3,5991890,5992028,139,19,0.372569039034671,0.655321509823043,-0.282752470788372,-102.683809762316,"CG","3:5991889:5992220","CGI"]
[3,6201207,6201332,126,27,0.506727126260487,0.78116266685252,-0.274435540592033,-123.340608225761,"CG","Os03g0217801","exon","Os03g0217801","Hypothetical gene && - && -"]
[3,6201207,6201332,126,27,0.506727126260487,0.78116266685252,-0.274435540592033,-123.340608225761,"CG","3:6200678:6203632","CGI"]
[3,6201207,6201332,126,27,0.506727126260487,0.78116266685252,-0.274435540592033,-123.340608225761,"CG","Os03g0217900","promoter","Os03g0217900","Hypothetical protein && - && -"]
[3,6201207,6201332,126,27,0.506727126260487,0.78116266685252,-0.274435540592033,-123.340608225761,"CG","Os03g0217801","utr5","Os03g0217801","Hypothetical gene && - && -"]
[3,6201207,6201332,126,27,0.506727126260487,0.78116266685252,-0.274435540592033,-123.340608225761,"CG","Os03g0217801","TSS","Os03g0217801","Hypothetical gene && - && -"]
[3,6201207,6201332,126,27,0.506727126260487,0.78116266685252,-0.274435540592033,-123.340608225761,"CG","Os03g0217801","promoter","Os03g0217801","Hypothetical gene && - && -"]
[3,6447040,6447119,80,15,0.567818006729841,0.75521552686171,-0.187397520131869,-64.5029126041102,"CHG","Os03g0223100","promoter","Os03g0223100","Cytochrome P450 family protein && sp|P98188|C94A2_VICSA Cytochrome P450 94A2 OS=Vicia sativa OX=3908 GN=CYP94A2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[3,6447040,6447119,80,15,0.567818006729841,0.75521552686171,-0.187397520131869,-64.5029126041102,"CHG","3:6432839:6458612","CGI"]
[3,6686657,6686714,58,5,0.131119645666684,0.381529183942766,-0.250409538276082,-23.6944217025069,"CHG","3:6686152:6688153","CGI_shore"]
[3,6686657,6686714,58,5,0.131119645666684,0.381529183942766,-0.250409538276082,-23.6944217025069,"CHG","3:6686455:6686731","CGI"]
[3,6952279,6952485,207,65,0.234638743517597,0.406389490197424,-0.171750746679828,-353.031110328467,"CHH","Os03g0231650","promoter","Os03g0231650","Hypothetical protein && sp|Q9FYA6|BCAT5_ARATH Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BCAT5 PE=1 SV=1 && PF01063:Amino-transferase class IV"]
[3,6952279,6952485,207,65,0.234638743517597,0.406389490197424,-0.171750746679828,-353.031110328467,"CHH","Os03g0231750","promoter","Os03g0231750","Hypothetical protein && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && -"]
[3,6952279,6952485,207,65,0.234638743517597,0.406389490197424,-0.171750746679828,-353.031110328467,"CHH","Os03g0231700","intron","Os03g0231700","Similar to squalene monooxygenase && sp|B7TWW5|SQE2_PANGI Squalene monooxygenase SE2 OS=Panax ginseng OX=4054 GN=SQE2 PE=2 SV=2 && -"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","Os03g0231700","promoter","Os03g0231700","Similar to squalene monooxygenase && sp|B7TWW5|SQE2_PANGI Squalene monooxygenase SE2 OS=Panax ginseng OX=4054 GN=SQE2 PE=2 SV=2 && -"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","3:6957400:6959401","CGI_shore"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","Os03g0231800","intron","Os03g0231800","Similar to Squalene monooxygenase 1 (EC 1.14.99.7) && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && PF08491:Squalene epoxidase"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","Os03g0231850","intron","Os03g0231850","Hypothetical protein && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && -"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","Os03g0231800","exon","Os03g0231800","Similar to Squalene monooxygenase 1 (EC 1.14.99.7) && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && PF08491:Squalene epoxidase"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","Os03g0231850","exon","Os03g0231850","Hypothetical protein && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && -"]
[3,6958184,6958350,167,17,0.606846562463524,0.839987179019301,-0.233140616555776,-99.1258508524111,"CG","Os03g0231850","utr5","Os03g0231850","Hypothetical protein && sp|O48651|SQE1_PANGI Squalene monooxygenase SE1 OS=Panax ginseng OX=4054 GN=SQE1 PE=2 SV=1 && -"]
[3,7005081,7005169,89,26,0.0197166168098169,0.187504641307366,-0.167788024497549,-156.748821596544,"CHH","3:7004491:7006492","CGI_shore"]
[3,7005081,7005169,89,26,0.0197166168098169,0.187504641307366,-0.167788024497549,-156.748821596544,"CHH","3:7005037:7007037","CGI_shore"]
[3,7238842,7238928,87,20,0.0481769710212034,0.126279879848641,-0.0781029088274376,-105.070886186904,"CHH","3:7230581:7241092","CGI"]
[3,7238842,7238928,87,20,0.0481769710212034,0.126279879848641,-0.0781029088274376,-105.070886186904,"CHH","Os03g0237250","intron","indeterminate domain 14, Loose Plant Architecture1","Indeterminate domain protein, Shoot gravitropis && sp|F4IPE3|IDD15_ARATH Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1 && -"]
[3,7238842,7238928,87,20,0.0481769710212034,0.126279879848641,-0.0781029088274376,-105.070886186904,"CHH","Os03g0237267","promoter","Os03g0237267","Hypothetical protein && sp|Q9FRH4|IDD16_ARATH Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1 && -"]
[3,7441245,7441424,180,55,0.0174460716979871,0.0717960443825633,-0.0543499726845762,-269.078045502623,"CG","3:7439649:7442193","CGI"]
[3,7441245,7441424,180,55,0.0174460716979871,0.0717960443825633,-0.0543499726845762,-269.078045502623,"CG","Os03g0240600","exon","U-box containing E3 ligase induced by phosphate starvation","U-box containing E3 ligase, Response to phosphate starvatio && sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 && PF04564:U-box domain"]
[3,7525467,7525574,108,19,0.0928192976701258,0.301072389879685,-0.208253092209559,-149.857648589814,"CHH","3:7524690:7526690","CGI_shore"]
[3,8626581,8626676,96,35,0.0192771564084161,0.127190392553632,-0.107913236145216,-161.817557062946,"CHH","3:8608399:8627732","CGI"]
[3,8825557,8825629,73,9,0.748145523714487,0.851102864142856,-0.102957340428369,-33.6729396617129,"CG","3:8824008:8826008","CGI_shore"]
[3,8825557,8825629,73,9,0.748145523714487,0.851102864142856,-0.102957340428369,-33.6729396617129,"CG","3:8825065:8827066","CGI_shore"]
[3,8825557,8825629,73,9,0.748145523714487,0.851102864142856,-0.102957340428369,-33.6729396617129,"CG","3:8825446:8827446","CGI_shore"]
[3,8992792,8993005,214,42,0.122609620943819,0.454380910025317,-0.331771289081498,-304.906198689875,"CHH","3:8965743:9069413","CGI"]
[3,9060920,9060985,66,9,0.389403118165318,0.646046275542526,-0.256643157377208,-35.1833519258607,"CHG","Os03g0270900","promoter","Os03g0270900","Conserved hypothetical protein && - && -"]
[3,9060920,9060985,66,9,0.389403118165318,0.646046275542526,-0.256643157377208,-35.1833519258607,"CHG","3:8965743:9069413","CGI"]
[3,9060972,9061074,103,22,0.0406459243720265,0.153463068443472,-0.112817144071446,-87.5511204234759,"CHH","Os03g0270900","promoter","Os03g0270900","Conserved hypothetical protein && - && -"]
[3,9060972,9061074,103,22,0.0406459243720265,0.153463068443472,-0.112817144071446,-87.5511204234759,"CHH","3:8965743:9069413","CGI"]
[3,9118497,9118549,53,25,0.0889953815602031,0.206264983459118,-0.117269601898915,-113.66760584408,"CHH","3:9117412:9118612","CGI"]
[3,9160759,9160844,86,17,0.0118427967653364,0.083820399294665,-0.0719776025293285,-86.3851502867595,"CHH","3:9159052:9161052","CGI_shore"]
[3,9160759,9160844,86,17,0.0118427967653364,0.083820399294665,-0.0719776025293285,-86.3851502867595,"CHH","3:9160528:9162529","CGI_shore"]
[3,9276587,9276662,76,21,0.136406107477728,0.326887530840177,-0.190481423362449,-113.317622296048,"CG","3:9276549:9281891","CGI"]
[3,9379018,9379292,275,74,0.112806624826882,0.280687167822263,-0.167880542995381,-560.137251147777,"CG","Os03g0276800","exon","heat shock protein 70, heat-shock protein 70, HEAT SHOCK PROTEIN 70KD","Heat shock protein Hsp70 family protein && sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein OS=Petunia hybrida OX=4102 GN=HSP70 PE=2 SV=1 && PF00012:Hsp70 protein"]
[3,9379018,9379292,275,74,0.112806624826882,0.280687167822263,-0.167880542995381,-560.137251147777,"CG","Os03g0276850","exon","Os03g0276850","Glutamate dehydrogenase, NAD-specific domain containing protein && sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein OS=Petunia hybrida OX=4102 GN=HSP70 PE=2 SV=1 && PF00012:Hsp70 protein"]
[3,9379018,9379292,275,74,0.112806624826882,0.280687167822263,-0.167880542995381,-560.137251147777,"CG","3:9378158:9379476","CGI"]
[3,9398109,9398172,64,15,0.0170231136302186,0.103184096582954,-0.0861609829527351,-80.4698496470586,"CHH","3:9396176:9398176","CGI_shore"]
[3,10509732,10509882,151,35,0.137478596369056,0.250452673644409,-0.112974077275354,-135.894582548113,"CHH","3:10506647:10510059","CGI"]
[3,11312433,11312496,64,11,0.659971067121396,0.824481713835126,-0.164510646713729,-45.6968031923074,"CHG","Target=RETROFIT_I-int:2748-4395;Class=LTR/Copia","repeat"]
[3,11540501,11540615,115,12,0.012408133981522,0.522113357453646,-0.509705223472124,-71.0600817671737,"CHH","3:11539346:11541708","CGI"]
[3,11540501,11540615,115,12,0.012408133981522,0.522113357453646,-0.509705223472124,-71.0600817671737,"CHH","ENSRNA049475944","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[3,11739269,11739414,146,53,0.601195925575484,0.805386265570884,-0.2041903399954,-266.048521864868,"CG","3:11738888:11740888","CGI_shore"]
[3,11739269,11739414,146,53,0.601195925575484,0.805386265570884,-0.2041903399954,-266.048521864868,"CG","3:11739175:11739829","CGI"]
[3,11854117,11854271,155,36,0.129221246235856,0.28695184055482,-0.157730594318964,-215.141330743447,"CHH","3:11853264:11855264","CGI_shore"]
[3,11882620,11882803,184,23,0.648581682834871,0.825124724727083,-0.176543041892211,-96.4916743028486,"CG","3:11881711:11883712","CGI_shore"]
[3,11925040,11925174,135,29,0.00993244811140768,0.206894927296542,-0.196962479185135,-137.758798972917,"CHH","3:11923806:11925807","CGI_shore"]
[3,11925040,11925174,135,29,0.00993244811140768,0.206894927296542,-0.196962479185135,-137.758798972917,"CHH","3:11924230:11926231","CGI_shore"]
[3,11925040,11925174,135,29,0.00993244811140768,0.206894927296542,-0.196962479185135,-137.758798972917,"CHH","Os03g0326600","intron","Os03g0326600","Nucleotide-binding, alpha-beta plait domain containing protein && sp|Q8RWV8|U1165_ARATH U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[3,12033737,12033925,189,49,0.117363976056207,0.263011033014212,-0.145647056958005,-257.304541753743,"CHH","3:12032215:12034215","CGI_shore"]
[3,12033737,12033925,189,49,0.117363976056207,0.263011033014212,-0.145647056958005,-257.304541753743,"CHH","3:12032965:12034965","CGI_shore"]
[3,12166797,12166947,151,17,0.296446840340174,0.535682126087602,-0.239235285747429,-75.7393196228075,"CHG","3:12166623:12168624","CGI_shore"]
[3,12230919,12231007,89,16,0.0199141865500087,0.150076181871026,-0.130161995321017,-84.0342243470685,"CHH","3:12228966:12230966","CGI_shore"]
[3,12230919,12231007,89,16,0.0199141865500087,0.150076181871026,-0.130161995321017,-84.0342243470685,"CHH","Os03g0331900","promoter","Os03g0331900","Yos1-like domain containing protein && - && PF08571:Yos1-like"]
[3,12230919,12231007,89,16,0.0199141865500087,0.150076181871026,-0.130161995321017,-84.0342243470685,"CHH","3:12230234:12232235","CGI_shore"]
[3,12230919,12231007,89,16,0.0199141865500087,0.150076181871026,-0.130161995321017,-84.0342243470685,"CHH","3:12230967:12231547","CGI"]
[3,12255723,12255812,90,7,0.03434813489166,0.494929105107917,-0.460580970216257,-45.1821047258607,"CHG","3:12255491:12257491","CGI_shore"]
[3,12255723,12255812,90,7,0.03434813489166,0.494929105107917,-0.460580970216257,-45.1821047258607,"CHG","3:12255786:12256603","CGI"]
[3,12255723,12255812,90,7,0.03434813489166,0.494929105107917,-0.460580970216257,-45.1821047258607,"CHG","3:12253785:12255785","CGI_shore"]
[3,12596862,12597048,187,57,0.643218051952535,0.842326236785354,-0.199108184832819,-256.026022260231,"CG","Os03g0338600","promoter","Os03g0338600","tRNA pseudouridine synthase family protein && sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana OX=3702 GN=At2g30320 PE=3 SV=1 && PF01416:tRNA pseudouridine synthase"]
[3,12596862,12597048,187,57,0.643218051952535,0.842326236785354,-0.199108184832819,-256.026022260231,"CG","3:12595315:12600098","CGI"]
[3,12596871,12597010,140,27,0.498052477399835,0.729289770906612,-0.231237293506777,-112.254786557301,"CHG","Os03g0338600","promoter","Os03g0338600","tRNA pseudouridine synthase family protein && sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana OX=3702 GN=At2g30320 PE=3 SV=1 && PF01416:tRNA pseudouridine synthase"]
[3,12596871,12597010,140,27,0.498052477399835,0.729289770906612,-0.231237293506777,-112.254786557301,"CHG","3:12595315:12600098","CGI"]
[3,12612169,12612223,55,13,0.0275361511911945,0.0890567414159006,-0.0615205902247061,-70.8026263182875,"CHH","3:12610477:12612478","CGI_shore"]
[3,12612169,12612223,55,13,0.0275361511911945,0.0890567414159006,-0.0615205902247061,-70.8026263182875,"CHH","Os03g0339300","intron","class III peroxidase 41, peroxidase 8.1","Hypothetical conserved gene && sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays OX=4577 GN=PER70 PE=1 SV=1 && PF00141:Peroxidase"]
[3,12635451,12635531,81,30,0.00352508251512546,0.0600045851518135,-0.056479502636688,-150.118625759974,"CHH","3:12634844:12636844","CGI_shore"]
[3,12635451,12635531,81,30,0.00352508251512546,0.0600045851518135,-0.056479502636688,-150.118625759974,"CHH","Os03g0339900","promoter","CALCINEURIN B-LIKE PROTEIN-INTERACTING PROTEIN KINASE 10","Similar to Serine/threonine protein kinase && sp|Q10LQ2|CIPKA_ORYSJ CBL-interacting protein kinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK10 PE=2 SV=1 && PF03822:NAF domain|PF00069:Protein kinase domain"]
[3,12940018,12940207,190,45,0.0374160622351835,0.195337666784591,-0.157921604549407,-240.951050721227,"CHH","Os03g0346500","promoter","Os03g0346500","Conserved hypothetical protein && - && -"]
[3,12940018,12940207,190,45,0.0374160622351835,0.195337666784591,-0.157921604549407,-240.951050721227,"CHH","3:12938231:12940232","CGI_shore"]
[3,12940018,12940207,190,45,0.0374160622351835,0.195337666784591,-0.157921604549407,-240.951050721227,"CHH","3:12939568:12941568","CGI_shore"]
[3,13167347,13167401,55,5,0.509974937505573,0.749387667280185,-0.239412729774612,-23.1016931792112,"CG","3:13166046:13168046","CGI_shore"]
[3,13167347,13167401,55,5,0.509974937505573,0.749387667280185,-0.239412729774612,-23.1016931792112,"CG","Os03g0351400","intron","tubby-like protein 14, tubby-like protein 6, F-box protein 139","Similar to Tubby-like protein 3 && sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1 && PF01167:Tub family"]
[3,13167469,13167526,58,5,0.404441410311865,0.673867327234653,-0.269425916922788,-23.2141262353148,"CG","3:13166046:13168046","CGI_shore"]
[3,13167469,13167526,58,5,0.404441410311865,0.673867327234653,-0.269425916922788,-23.2141262353148,"CG","Os03g0351400","exon","tubby-like protein 14, tubby-like protein 6, F-box protein 139","Similar to Tubby-like protein 3 && sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1 && PF01167:Tub family"]
[3,13167613,13167936,324,18,0.196636985999543,0.408021804401971,-0.211384818402428,-86.6833501421749,"CG","3:13166046:13168046","CGI_shore"]
[3,13167613,13167936,324,18,0.196636985999543,0.408021804401971,-0.211384818402428,-86.6833501421749,"CG","Os03g0351400","promoter","tubby-like protein 14, tubby-like protein 6, F-box protein 139","Similar to Tubby-like protein 3 && sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1 && PF01167:Tub family"]
[3,13252504,13252559,56,9,0.0503423424975319,0.283235016102725,-0.232892673605193,-34.5176875179031,"CHG","3:13251352:13253353","CGI_shore"]
[3,13390234,13390331,98,4,0.0659954256143363,0.585342730246074,-0.519347304631738,-17.7078534819304,"CHG","3:13380559:13559900","CGI"]
[3,13681525,13681653,129,35,0.0590385343107747,0.252805302642908,-0.193766768332133,-239.737480087679,"CHH","Os03g0356526","promoter","Os03g0356526","Hypothetical conserved gene && - && PF14009:Domain of unknown function (DUF4228)"]
[3,13681525,13681653,129,35,0.0590385343107747,0.252805302642908,-0.193766768332133,-239.737480087679,"CHH","3:13680406:13682407","CGI_shore"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","Os03g0365250","promoter","Os03g0365250","Conserved hypothetical protein && - && -"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","3:14262293:14264293","CGI_shore"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","Os03g0365200","exon","Os03g0365200","Similar to Ulp1 protease family, C-terminal catalytic domain containing protein && - && -"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","Os03g0365200","utr5","Os03g0365200","Similar to Ulp1 protease family, C-terminal catalytic domain containing protein && - && -"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","3:14262588:14264589","CGI_shore"]
[3,14263751,14263825,75,13,0.0588545755697642,0.369279190804943,-0.310424615235178,-100.984050382053,"CHH","Os03g0365000","intron","GDSL ESTERASE/LIPASE PROTEIN 47","Similar to GDSL-like Lipase/Acylhydrolase family protein && sp|Q9SHP6|GDL10_ARATH GDSL esterase/lipase At1g28610 OS=Arabidopsis thaliana OX=3702 GN=At1g28610 PE=2 SV=2 && PF00657:GDSL-like Lipase/Acylhydrolase"]
[3,14276510,14276696,187,47,0.125129126354031,0.316794818511618,-0.191665692157587,-209.909393299839,"CG","3:14276227:14278039","CGI"]
[3,14428359,14428447,89,31,0.577079698665396,0.779699180681321,-0.202619482015926,-127.451309620185,"CG","3:14428359:14430360","CGI_shore"]
[3,14428359,14428447,89,31,0.577079698665396,0.779699180681321,-0.202619482015926,-127.451309620185,"CG","Target=(CCG)n:1-172;Class=Simple_repeat","repeat"]
[3,14438550,14438785,236,52,0.0412430845377129,0.19916480275199,-0.157921718214277,-375.793297614682,"CHH","3:14436761:14438761","CGI_shore"]
[3,14438550,14438785,236,52,0.0412430845377129,0.19916480275199,-0.157921718214277,-375.793297614682,"CHH","3:14437383:14439384","CGI_shore"]
[3,14438550,14438785,236,52,0.0412430845377129,0.19916480275199,-0.157921718214277,-375.793297614682,"CHH","Os03g0368000","promoter","class III peroxidase 42","Similar to Peroxidase 1 && sp|Q9FEQ8|PER2_MAIZE Peroxidase 2 OS=Zea mays OX=4577 GN=PER2 PE=2 SV=1 && PF00141:Peroxidase"]
[3,14438550,14438785,236,52,0.0412430845377129,0.19916480275199,-0.157921718214277,-375.793297614682,"CHH","3:14438762:14439363","CGI"]
[3,14450199,14450261,63,24,0.0204117579632938,0.139057495074378,-0.118645737111084,-110.40082150403,"CHH","3:14443838:14450514","CGI"]
[3,14508893,14508966,74,6,0.0310700883190834,0.272305403791267,-0.241235315472183,-31.2934469415751,"CHG","3:14504860:14514001","CGI"]
[3,14508893,14508966,74,6,0.0310700883190834,0.272305403791267,-0.241235315472183,-31.2934469415751,"CHG","Os03g0369600","intron","class III peroxidase 48","Similar to Class III peroxidase 48 && sp|Q9FEQ8|PER2_MAIZE Peroxidase 2 OS=Zea mays OX=4577 GN=PER2 PE=2 SV=1 && PF00141:Peroxidase"]
[3,14647109,14647188,80,24,0.0258251022494766,0.120169759260562,-0.0943446570110854,-87.041774047911,"CHH","3:14646936:14648937","CGI_shore"]
[3,14647109,14647188,80,24,0.0258251022494766,0.120169759260562,-0.0943446570110854,-87.041774047911,"CHH","3:14647180:14649180","CGI_shore"]
[3,14802113,14802198,86,18,0.572196714066799,0.794553863434,-0.222357149367202,-98.1235697319988,"CG","3:14801477:14803478","CGI_shore"]
[3,14802113,14802198,86,18,0.572196714066799,0.794553863434,-0.222357149367202,-98.1235697319988,"CG","3:14801950:14802378","CGI"]
[3,14812906,14813129,224,35,0.0508241483494752,0.209022350236136,-0.158198201886661,-234.249061020078,"CHH","3:14811214:14813215","CGI_shore"]
[3,14812906,14813129,224,35,0.0508241483494752,0.209022350236136,-0.158198201886661,-234.249061020078,"CHH","3:14811245:14813245","CGI_shore"]
[3,14812906,14813129,224,35,0.0508241483494752,0.209022350236136,-0.158198201886661,-234.249061020078,"CHH","3:14812588:14814589","CGI_shore"]
[3,14823445,14823547,103,32,0.208702094711192,0.467067502769793,-0.258365408058601,-169.193407960254,"CG","3:14823158:14824518","CGI"]
[3,14993655,14993728,74,17,0.00421889113269205,0.0807494953297701,-0.0765306041970781,-102.501805629215,"CHH","3:14991845:14993846","CGI_shore"]
[3,14993655,14993728,74,17,0.00421889113269205,0.0807494953297701,-0.0765306041970781,-102.501805629215,"CHH","Os03g0379100","intron","Os03g0379100","Protein of unknown function DUF248, methyltransferase putative family protein && sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana OX=3702 GN=At1g26850 PE=2 SV=2 && PF03141:Putative S-adenosyl-L-methionine-dependent methyltransferase"]
[3,14993655,14993728,74,17,0.00421889113269205,0.0807494953297701,-0.0765306041970781,-102.501805629215,"CHH","3:14993164:14995165","CGI_shore"]
[3,15157667,15157839,173,51,0.0413248448569881,0.125008473670329,-0.0836836288133405,-261.636791813296,"CHH","3:15157638:15159639","CGI_shore"]
[3,15253482,15253647,166,27,0.060975924998278,0.35724327702465,-0.296267352026371,-162.379088937197,"CHH","3:15252207:15254208","CGI_shore"]
[3,15253482,15253647,166,27,0.060975924998278,0.35724327702465,-0.296267352026371,-162.379088937197,"CHH","3:15253125:15255125","CGI_shore"]
[3,15253482,15253647,166,27,0.060975924998278,0.35724327702465,-0.296267352026371,-162.379088937197,"CHH","3:15253161:15255162","CGI_shore"]
[3,16353526,16353591,66,13,0.606764549543626,0.833284313739184,-0.226519764195558,-65.5395602996065,"CG","3:16345657:16359293","CGI"]
[3,16377494,16377592,99,9,0.439774179125264,0.700234164993073,-0.260459985867809,-43.3696028164396,"CG","3:16376346:16378346","CGI_shore"]
[3,16446604,16446689,86,7,0.0819555097196573,0.506237195448784,-0.424281685729126,-34.7759351250785,"CHG","3:16445121:16447122","CGI_shore"]
[3,16446604,16446689,86,7,0.0819555097196573,0.506237195448784,-0.424281685729126,-34.7759351250785,"CHG","3:16446346:16448347","CGI_shore"]
[3,16484395,16484511,117,29,0.593631019484051,0.886579126662784,-0.292948107178734,-171.277576418825,"CG","3:16483119:16485120","CGI_shore"]
[3,16484395,16484511,117,29,0.593631019484051,0.886579126662784,-0.292948107178734,-171.277576418825,"CG","3:16484154:16484657","CGI"]
[3,16503262,16503364,103,40,0.563179264353131,0.772265290259358,-0.209086025906227,-158.723826259761,"CG","3:16501509:16505062","CGI"]
[3,16509133,16509191,59,22,0.148391260314403,0.263115097900692,-0.114723837586289,-95.3176299886149,"CHH","3:16507299:16509299","CGI_shore"]
[3,16509301,16509479,179,41,0.576590595526999,0.843162794986009,-0.26657219945901,-190.021282997172,"CG","3:16509300:16509754","CGI"]
[3,16680906,16680968,63,7,0.0606218687361113,0.431636230967087,-0.371014362230976,-35.4071181053024,"CHG","3:16680750:16681484","CGI"]
[3,16743460,16743510,51,10,0.12733965155575,0.299081752608827,-0.171742101053078,-45.3206460890963,"CG","3:16742490:16744491","CGI_shore"]
[3,17032172,17032399,228,22,0.377217737910638,0.809424310122767,-0.432206572212128,-120.238260178423,"CHG","3:17031665:17033666","CGI_shore"]
[3,17175932,17175988,57,18,0.545750204988591,0.780904514935445,-0.235154309946854,-73.6857385790092,"CG","Os03g0414400","promoter","Os03g0414400","Conserved hypothetical protein && - && -"]
[3,17175932,17175988,57,18,0.545750204988591,0.780904514935445,-0.235154309946854,-73.6857385790092,"CG","3:17173888:17187126","CGI"]
[3,17480034,17480084,51,7,0.215082960244557,0.726557067278886,-0.511474107034329,-38.6424981554377,"CG","3:17458409:17513428","CGI"]
[3,17496041,17496163,123,13,0.306045477234176,0.666155915310476,-0.3601104380763,-60.7648653682252,"CHG","3:17458409:17513428","CGI"]
[3,17657596,17657761,166,40,0.0450640278509939,0.238182068816131,-0.193118040965137,-182.09676329067,"CHH","3:17657080:17657780","CGI"]
[3,18075582,18075759,178,12,0.197813324705288,0.575572596429746,-0.377759271724458,-61.4136791286615,"CHG","3:18073581:18075789","CGI"]
[3,18075582,18075759,178,12,0.197813324705288,0.575572596429746,-0.377759271724458,-61.4136791286615,"CHG","3:18074576:18076576","CGI_shore"]
[3,18146133,18146214,82,21,0.0110203153543715,0.167993180411123,-0.156972865056751,-112.189554808596,"CHH","3:18146003:18148003","CGI_shore"]
[3,18146133,18146214,82,21,0.0110203153543715,0.167993180411123,-0.156972865056751,-112.189554808596,"CHH","Os03g0432000","promoter","Os03g0432000","Hypothetical conserved gene && - && -"]
[3,18440441,18440498,58,18,0.012246009594373,0.067224677223326,-0.054978667628953,-104.164328945819,"CHH","3:18439891:18441892","CGI_shore"]
[3,18440441,18440498,58,18,0.012246009594373,0.067224677223326,-0.054978667628953,-104.164328945819,"CHH","3:18440230:18442230","CGI_shore"]
[3,18505626,18505723,98,14,0.00606311839032247,0.105890662206545,-0.0998275438162221,-78.7375604388928,"CHH","3:18503943:18505944","CGI_shore"]
[3,18505626,18505723,98,14,0.00606311839032247,0.105890662206545,-0.0998275438162221,-78.7375604388928,"CHH","3:18504850:18506850","CGI_shore"]
[3,18633208,18633264,57,14,0.0158750603852383,0.210432732393073,-0.194557672007835,-71.9632076059167,"CHH","3:18632954:18634955","CGI_shore"]
[3,18637918,18638032,115,37,0.021206183967451,0.10252236439279,-0.0813161804253391,-234.32180919795,"CHH","3:18636353:18638354","CGI_shore"]
[3,18637918,18638032,115,37,0.021206183967451,0.10252236439279,-0.0813161804253391,-234.32180919795,"CHH","Os03g0441050","promoter","Os03g0441050","Hypothetical protein && sp|Q6SJR1|TAF4_ARATH Transcription initiation factor TFIID subunit 4 OS=Arabidopsis thaliana OX=3702 GN=TAF4 PE=1 SV=1 && -"]
[3,18637918,18638032,115,37,0.021206183967451,0.10252236439279,-0.0813161804253391,-234.32180919795,"CHH","Os03g0440900","intron","OsI-BAK1","Similar to LRR protein && sp|Q9FPJ5|LRR1_ARATH Leucine-rich repeat protein 1 OS=Arabidopsis thaliana OX=3702 GN=LRR1 PE=1 SV=1 && PF08263:Leucine rich repeat N-terminal domain"]
[3,18932695,18932776,82,41,0.317363370559504,0.482444683330772,-0.165081312771268,-198.69244541813,"CG","3:18932509:18934509","CGI_shore"]
[3,19671737,19671886,150,14,0.364407605610268,0.64847508016701,-0.284067474556743,-54.3939392730974,"CHG","3:19669922:19671922","CGI_shore"]
[3,19671737,19671886,150,14,0.364407605610268,0.64847508016701,-0.284067474556743,-54.3939392730974,"CHG","3:19670662:19672662","CGI_shore"]
[3,19671737,19671886,150,14,0.364407605610268,0.64847508016701,-0.284067474556743,-54.3939392730974,"CHG","3:19670678:19672679","CGI_shore"]
[3,19671737,19671886,150,14,0.364407605610268,0.64847508016701,-0.284067474556743,-54.3939392730974,"CHG","3:19671634:19673635","CGI_shore"]
[3,19717426,19717527,102,30,0.614618960526271,0.848460000359481,-0.233841039833211,-147.613031918194,"CG","Os03g0556200","exon","Os03g0556200","Hypothetical gene && - && -"]
[3,19717426,19717527,102,30,0.614618960526271,0.848460000359481,-0.233841039833211,-147.613031918194,"CG","3:19717394:19728276","CGI"]
[3,19719696,19719839,144,25,0.648068199657689,0.830780311597667,-0.182712111939979,-92.4450408761315,"CG","3:19717394:19728276","CGI"]
[3,19739045,19739128,84,6,0.389590137780885,0.723746856294303,-0.334156718513418,-27.7023638230442,"CHG","3:19737643:19739644","CGI_shore"]
[3,19739045,19739128,84,6,0.389590137780885,0.723746856294303,-0.334156718513418,-27.7023638230442,"CHG","3:19738412:19740413","CGI_shore"]
[3,20144158,20144315,158,51,0.0195632005774121,0.0942968799168382,-0.0747336793394261,-226.844389314435,"CHH","3:20142516:20144517","CGI_shore"]
[3,20144158,20144315,158,51,0.0195632005774121,0.0942968799168382,-0.0747336793394261,-226.844389314435,"CHH","3:20143317:20145318","CGI_shore"]
[3,20144158,20144315,158,51,0.0195632005774121,0.0942968799168382,-0.0747336793394261,-226.844389314435,"CHH","3:20144103:20144810","CGI"]
[3,20615689,20615834,146,33,0.0374061171178507,0.185993358516652,-0.148587241398801,-182.17642793017,"CHH","3:20614966:20616966","CGI_shore"]
[3,20617507,20617698,192,86,0.0223572389872406,0.215844246025176,-0.193487007037935,-634.041343950559,"CHH","3:20616967:20617570","CGI"]
[3,20617507,20617698,192,86,0.0223572389872406,0.215844246025176,-0.193487007037935,-634.041343950559,"CHH","3:20617570:20619571","CGI_shore"]
[3,20670874,20670986,113,27,0.0139634986310011,0.14659071907058,-0.132627220439579,-167.983589128786,"CHH","3:20669663:20671748","CGI"]
[3,20670874,20670986,113,27,0.0139634986310011,0.14659071907058,-0.132627220439579,-167.983589128786,"CHH","Os03g0570100","promoter","Os03g0570100","Similar to Cytochrome P450 79A1 (EC 1.14.13.41) (Tyrosine N-monooxygenase) (Cytochrome P450Tyr) && sp|Q43135|C79A1_SORBI Tyrosine N-monooxygenase OS=Sorghum bicolor OX=4558 GN=CYP79A1 PE=1 SV=3 && PF00067:Cytochrome P450"]
[3,20672592,20672684,93,24,0.0159002325398296,0.170916253615186,-0.155016021075357,-118.924143879751,"CHH","Os03g0570100","promoter","Os03g0570100","Similar to Cytochrome P450 79A1 (EC 1.14.13.41) (Tyrosine N-monooxygenase) (Cytochrome P450Tyr) && sp|Q43135|C79A1_SORBI Tyrosine N-monooxygenase OS=Sorghum bicolor OX=4558 GN=CYP79A1 PE=1 SV=3 && PF00067:Cytochrome P450"]
[3,20672592,20672684,93,24,0.0159002325398296,0.170916253615186,-0.155016021075357,-118.924143879751,"CHH","3:20671748:20673749","CGI_shore"]
[3,20672592,20672684,93,24,0.0159002325398296,0.170916253615186,-0.155016021075357,-118.924143879751,"CHH","3:20672534:20674534","CGI_shore"]
[3,20918802,20918924,123,33,0.592681045886744,0.806120866353009,-0.213439820466265,-147.587312364196,"CG","3:20916413:20919339","CGI"]
[3,20918802,20918924,123,33,0.592681045886744,0.806120866353009,-0.213439820466265,-147.587312364196,"CG","Os03g0573500","promoter","Os03g0573500","Disease resistance protein domain containing protein && sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana OX=3702 GN=At3g14460 PE=3 SV=1 && PF00931:NB-ARC domain"]
[3,20918802,20918924,123,33,0.592681045886744,0.806120866353009,-0.213439820466265,-147.587312364196,"CG","3:20918127:20920127","CGI_shore"]
[3,21116367,21116424,58,10,0.575881912000318,0.807791447777802,-0.231909535777484,-39.3355007007733,"CG","Os03g0577350","exon","Os03g0577350","Conserved hypothetical protein && - && -"]
[3,21116367,21116424,58,10,0.575881912000318,0.807791447777802,-0.231909535777484,-39.3355007007733,"CG","3:21115795:21116900","CGI"]
[3,21116367,21116424,58,10,0.575881912000318,0.807791447777802,-0.231909535777484,-39.3355007007733,"CG","Os03g0577350","TSS","Os03g0577350","Conserved hypothetical protein && - && -"]
[3,21116367,21116424,58,10,0.575881912000318,0.807791447777802,-0.231909535777484,-39.3355007007733,"CG","Os03g0577350","promoter","Os03g0577350","Conserved hypothetical protein && - && -"]
[3,21126630,21126749,120,20,0.00431798088309403,0.124253281651274,-0.11993530076818,-117.42491488127,"CHH","3:21125563:21127563","CGI_shore"]
[3,21148494,21148882,389,103,0.228140371153257,0.450425438307772,-0.222285067154515,-527.943846626779,"CHH","3:21146644:21148645","CGI_shore"]
[3,21148494,21148882,389,103,0.228140371153257,0.450425438307772,-0.222285067154515,-527.943846626779,"CHH","3:21147045:21149045","CGI_shore"]
[3,21212027,21212229,203,24,0.57343356530614,0.808887881252713,-0.235454315946573,-133.296474600131,"CG","Os03g0578900","promoter","GAMYB-LIKE 2","Similar to MYB1 && sp|O80883|MB101_ARATH Transcription factor MYB101 OS=Arabidopsis thaliana OX=3702 GN=MYB101 PE=1 SV=1 && PF00249:Myb-like DNA-binding domain"]
[3,21212027,21212229,203,24,0.57343356530614,0.808887881252713,-0.235454315946573,-133.296474600131,"CG","3:21210797:21212797","CGI_shore"]
[3,21217504,21217574,71,15,0.0565373262490781,0.15058222445194,-0.0940448982028614,-84.7049282523036,"CHH","3:21215567:21217568","CGI_shore"]
[3,21660411,21660597,187,23,0.161225472858191,0.457432787842381,-0.29620731498419,-130.248106946803,"CG","Os03g0586700","promoter","Os03g0586700","Conserved hypothetical protein && sp|Q8JHZ8|PALD_CHICK Paladin OS=Gallus gallus OX=9031 GN=PALD1 PE=2 SV=2 && PF14566:Inositol hexakisphosphate"]
[3,21660411,21660597,187,23,0.161225472858191,0.457432787842381,-0.29620731498419,-130.248106946803,"CG","3:21659493:21661017","CGI"]
[3,21761736,21761808,73,11,0.475642404355941,0.868180345792253,-0.392537941436312,-43.4004709277644,"CG","Os03g0588800","intron","Os03g0588800","Hypothetical conserved gene && - && PF07899:Frigida-like protein"]
[3,22089618,22089668,51,7,0.109239209670956,0.421765587381535,-0.31252637771058,-42.718699570888,"CG","3:22089560:22090157","CGI"]
[3,22100493,22100745,253,80,0.116788944326313,0.204415577958217,-0.0876266336319046,-391.897958319614,"CG","3:22099632:22100865","CGI"]
[3,22100493,22100745,253,80,0.116788944326313,0.204415577958217,-0.0876266336319046,-391.897958319614,"CG","3:22099676:22101676","CGI_shore"]
[3,22100493,22100745,253,80,0.116788944326313,0.204415577958217,-0.0876266336319046,-391.897958319614,"CG","Os03g0594600","exon","Os03g0594600","Similar to H0523F07.7 protein && - && -"]
[3,22100493,22100745,253,80,0.116788944326313,0.204415577958217,-0.0876266336319046,-391.897958319614,"CG","3:22100497:22102497","CGI_shore"]
[3,22514874,22514986,113,14,0.309182342290392,0.681729396040795,-0.372547053750403,-75.6479049437553,"CHG","3:22513421:22515421","CGI_shore"]
[3,22514874,22514986,113,14,0.309182342290392,0.681729396040795,-0.372547053750403,-75.6479049437553,"CHG","3:22514694:22514957","CGI"]
[3,22514874,22514986,113,14,0.309182342290392,0.681729396040795,-0.372547053750403,-75.6479049437553,"CHG","3:22514957:22516958","CGI_shore"]
[3,22720373,22720424,52,11,0.174045653139441,0.360723274059745,-0.186677620920304,-47.7511541394746,"CG","3:22718199:22726812","CGI"]
[3,22852410,22852462,53,5,0.521970395074962,0.755782953168361,-0.233812558093399,-21.536541943592,"CG","3:22851858:22853859","CGI_shore"]
[3,22852410,22852462,53,5,0.521970395074962,0.755782953168361,-0.233812558093399,-21.536541943592,"CG","Os03g0607700","promoter","Os03g0607700","Zinc finger, C2H2-like domain containing protein && sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1 && -"]
[3,22983992,22984126,135,33,0.651513298370573,0.83498774645489,-0.183474448084317,-126.703536842767,"CG","3:22982752:22985869","CGI"]
[3,23010977,23011182,206,39,0.0534590856096712,0.429709493973268,-0.376250408363597,-327.052036339561,"CHH","3:23009889:23011890","CGI_shore"]
[3,23125002,23125223,222,61,0.274358510013269,0.499944244101071,-0.225585734087803,-418.923094105561,"CG","3:23123555:23129057","CGI"]
[3,23125002,23125223,222,61,0.274358510013269,0.499944244101071,-0.225585734087803,-418.923094105561,"CG","Os03g0612400","intron","OsSTA104","Similar to ASL1 && sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1 && PF03195:Lateral organ boundaries (LOB) domain"]
[3,23125002,23125223,222,61,0.274358510013269,0.499944244101071,-0.225585734087803,-418.923094105561,"CG","Os03g0612201","promoter","Os03g0612201","Hypothetical conserved gene && - && -"]
[3,23156817,23156870,54,13,0.0174292799997706,0.150428439886353,-0.132999159886582,-81.1874453726276,"CHH","3:23156089:23158090","CGI_shore"]
[3,23156817,23156870,54,13,0.0174292799997706,0.150428439886353,-0.132999159886582,-81.1874453726276,"CHH","3:23156426:23158426","CGI_shore"]
[3,23447716,23447793,78,19,0.629590867187127,0.831519422893862,-0.201928555706734,-84.0129668638733,"CG","3:23445572:23454344","CGI"]
[3,23450430,23450637,208,29,0.333123389384124,0.545357215662316,-0.212233826278193,-143.455816731834,"CG","3:23445572:23454344","CGI"]
[3,23450430,23450637,208,29,0.333123389384124,0.545357215662316,-0.212233826278193,-143.455816731834,"CG","Os03g0618300","exon","Os03g0618300","Isopenicillin N synthase family protein && sp|Q9SRM3|JOX1_ARATH Jasmonate-induced oxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=JOX1 PE=1 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[3,23537885,23537961,77,20,0.0279549313528503,0.177916820053515,-0.149961888700664,-91.2716600020924,"CHH","Os03g0620500","intron","OsSTA105","Transcriptional factor B3 family protein && sp|Q851W4|Y3205_ORYSJ B3 domain-containing protein Os03g0620500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0620500 PE=2 SV=1 && -"]
[3,23567357,23567437,81,18,0.0446605901854839,0.14929895520746,-0.104638365021976,-76.4133778071922,"CHH","Os03g0621600","promoter","Os03g0621600","Transcriptional factor B3 domain containing protein && sp|Q851V5|Y3216_ORYSJ Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1 && PF02362:B3 DNA binding domain"]
[3,23567357,23567437,81,18,0.0446605901854839,0.14929895520746,-0.104638365021976,-76.4133778071922,"CHH","3:23566843:23568844","CGI_shore"]
[3,24399780,24399833,54,26,0.369655847973236,0.719710378536844,-0.350054530563608,-118.7538325386,"CG","3:24399222:24402681","CGI"]
[3,24408318,24408554,237,6,0.206027198278529,0.393429207905248,-0.187402009626719,-20.5541130291561,"CHG","3:24407827:24409827","CGI_shore"]
[3,24408318,24408554,237,6,0.206027198278529,0.393429207905248,-0.187402009626719,-20.5541130291561,"CHG","3:24408241:24408861","CGI"]
[3,24766071,24766123,53,15,0.00835908371710443,0.17834675610836,-0.169987672391255,-82.0056536482135,"CHH","3:24764705:24766706","CGI_shore"]
[3,25057619,25057670,52,15,0.0638931847098354,0.353591648809641,-0.289698464099806,-82.9770177462679,"CHH","3:25056231:25058231","CGI_shore"]
[3,25057619,25057670,52,15,0.0638931847098354,0.353591648809641,-0.289698464099806,-82.9770177462679,"CHH","3:25057375:25059376","CGI_shore"]
[3,25211511,25211638,128,17,0.281868477438745,0.559363119341463,-0.277494641902719,-84.1905775869907,"CG","3:25209805:25211805","CGI_shore"]
[3,25358060,25358206,147,43,0.584161017905501,0.77489115471461,-0.19073013680911,-223.425130900443,"CG","Os03g0652400","exon","F-box protein 158","F-box domain, cyclin-like domain containing protein && - && PF00646:F-box domain"]
[3,25358060,25358206,147,43,0.584161017905501,0.77489115471461,-0.19073013680911,-223.425130900443,"CG","3:25357955:25358625","CGI"]
[3,25395617,25395673,57,5,0.794990578689697,0.919263014476065,-0.124272435786368,-24.0650294927564,"CG","Os03g0653100","exon","F-box protein 159","F-box domain, cyclin-like domain containing protein && - && PF00646:F-box domain"]
[3,25395617,25395673,57,5,0.794990578689697,0.919263014476065,-0.124272435786368,-24.0650294927564,"CG","3:25395585:25397586","CGI_shore"]
[3,25395617,25395673,57,5,0.794990578689697,0.919263014476065,-0.124272435786368,-24.0650294927564,"CG","3:25394408:25396409","CGI_shore"]
[3,25479093,25479178,86,18,0.0127899864658505,0.0976022539974189,-0.0848122675315684,-87.5468315403691,"CHH","3:25477179:25479180","CGI_shore"]
[3,25479093,25479178,86,18,0.0127899864658505,0.0976022539974189,-0.0848122675315684,-87.5468315403691,"CHH","3:25478628:25479108","CGI"]
[3,25479093,25479178,86,18,0.0127899864658505,0.0976022539974189,-0.0848122675315684,-87.5468315403691,"CHH","3:25479108:25481109","CGI_shore"]
[3,25567615,25567702,88,5,0.236274897217008,0.629500412557616,-0.393225515340607,-23.1738936446306,"CG","3:25565867:25567868","CGI_shore"]
[3,25567615,25567702,88,5,0.236274897217008,0.629500412557616,-0.393225515340607,-23.1738936446306,"CG","3:25566586:25568587","CGI_shore"]
[3,25916414,25916554,141,16,0.463323569801185,0.746354612545799,-0.283031042744614,-67.6188753163324,"CHG","3:25914779:25916779","CGI_shore"]
[3,25916414,25916554,141,16,0.463323569801185,0.746354612545799,-0.283031042744614,-67.6188753163324,"CHG","3:25916053:25916553","CGI"]
[3,25916414,25916554,141,16,0.463323569801185,0.746354612545799,-0.283031042744614,-67.6188753163324,"CHG","3:25916553:25918554","CGI_shore"]
[3,26197890,26198100,211,40,0.508294435752684,0.819790501866974,-0.31149606611429,-180.989504660923,"CG","3:26195917:26197917","CGI_shore"]
[3,26197890,26198100,211,40,0.508294435752684,0.819790501866974,-0.31149606611429,-180.989504660923,"CG","3:26197918:26198432","CGI"]
[3,26237928,26238035,108,34,0.744103422913232,0.872522853325403,-0.128419430412171,-157.401232644505,"CG","Os03g0666500","intron","small GTP-binding protein OsRab5B1","Similar to Ras-related protein RHA1 && sp|Q0ILQ6|RAB5A_ORYSJ Ras-related protein Rab5A OS=Oryza sativa subsp. japonica OX=39947 GN=RAB5A PE=1 SV=1 && PF00071:Ras family"]
[3,26237928,26238035,108,34,0.744103422913232,0.872522853325403,-0.128419430412171,-157.401232644505,"CG","Os03g0666550","intron","Os03g0666550","Hypothetical protein && sp|Q0ILQ6|RAB5A_ORYSJ Ras-related protein Rab5A OS=Oryza sativa subsp. japonica OX=39947 GN=RAB5A PE=1 SV=1 && -"]
[3,26237928,26238035,108,34,0.744103422913232,0.872522853325403,-0.128419430412171,-157.401232644505,"CG","3:26237638:26239639","CGI_shore"]
[3,26237928,26238035,108,34,0.744103422913232,0.872522853325403,-0.128419430412171,-157.401232644505,"CG","Os03g0666600","exon","Os03g0666600","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9SCP5|U73C7_ARATH UDP-glycosyltransferase 73C7 OS=Arabidopsis thaliana OX=3702 GN=UGT73C7 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[3,26237928,26238035,108,34,0.744103422913232,0.872522853325403,-0.128419430412171,-157.401232644505,"CG","3:26237927:26239442","CGI"]
[3,26464467,26464622,156,39,0.557074870522815,0.823627248642843,-0.266552378120028,-188.42867378175,"CG","Os03g0670800","promoter","Os03g0670800","Conserved hypothetical protein && - && -"]
[3,26464467,26464622,156,39,0.557074870522815,0.823627248642843,-0.266552378120028,-188.42867378175,"CG","3:26463209:26465210","CGI_shore"]
[3,26464467,26464622,156,39,0.557074870522815,0.823627248642843,-0.266552378120028,-188.42867378175,"CG","3:26464096:26464755","CGI"]
[3,26464467,26464622,156,39,0.557074870522815,0.823627248642843,-0.266552378120028,-188.42867378175,"CG","Os03g0671000","promoter","basic helix-loop-helix protein 022","Similar to Helix-loop-helix DNA-binding domain containing protein && sp|Q9T072|BH025_ARATH Transcription factor bHLH25 OS=Arabidopsis thaliana OX=3702 GN=BHLH25 PE=2 SV=2 && -"]
[3,26464467,26464622,156,39,0.557074870522815,0.823627248642843,-0.266552378120028,-188.42867378175,"CG","3:26464173:26466173","CGI_shore"]
[3,26798986,26799086,101,26,0.466828521792254,0.74781209042728,-0.280983568635026,-126.403167529606,"CG","Os03g0677475","promoter","Os03g0677475","Conserved hypothetical protein && - && -"]
[3,26922563,26922715,153,17,0.652240460059159,0.845153932568574,-0.192913472509415,-79.996766910077,"CG","3:26922186:26924186","CGI_shore"]
[3,26922563,26922715,153,17,0.652240460059159,0.845153932568574,-0.192913472509415,-79.996766910077,"CG","Os03g0679300","exon","Os03g0679300","Similar to Ubiquitin-conjugating enzyme family protein, expressed && sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 && -"]
[3,26922563,26922715,153,17,0.652240460059159,0.845153932568574,-0.192913472509415,-79.996766910077,"CG","Os03g0679300","intron","Os03g0679300","Similar to Ubiquitin-conjugating enzyme family protein, expressed && sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 && -"]
[3,26958966,26959276,311,43,0.02496887172799,0.281904942722889,-0.256936070994899,-323.165602956576,"CHH","Os03g0679800","promoter","Os03g0679800","Similar to TPR Domain containing protein && sp|F8RP11|HSOP_WHEAT Hsp70-Hsp90 organizing protein OS=Triticum aestivum OX=4565 GN=HOP PE=1 SV=1 && -"]
[3,26958966,26959276,311,43,0.02496887172799,0.281904942722889,-0.256936070994899,-323.165602956576,"CHH","Os03g0679700","exon","HMP-P synthase","Similar to Thiamine biosynthesis protein thiC && sp|O82392|THIC_ARATH Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THIC PE=1 SV=1 && PF01964:Radical SAM ThiC family"]
[3,26958966,26959276,311,43,0.02496887172799,0.281904942722889,-0.256936070994899,-323.165602956576,"CHH","Os03g0679700","utr3","HMP-P synthase","Similar to Thiamine biosynthesis protein thiC && sp|O82392|THIC_ARATH Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THIC PE=1 SV=1 && PF01964:Radical SAM ThiC family"]
[3,26958966,26959276,311,43,0.02496887172799,0.281904942722889,-0.256936070994899,-323.165602956576,"CHH","3:26958472:26960472","CGI_shore"]
[3,26958966,26959276,311,43,0.02496887172799,0.281904942722889,-0.256936070994899,-323.165602956576,"CHH","Os03g0679700","TES","HMP-P synthase","Similar to Thiamine biosynthesis protein thiC && sp|O82392|THIC_ARATH Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THIC PE=1 SV=1 && PF01964:Radical SAM ThiC family"]
[3,27177012,27177137,126,23,0.0238871766674282,0.483645349166498,-0.45975817249907,-170.079028899262,"CHH","3:27175433:27177433","CGI_shore"]
[3,27177012,27177137,126,23,0.0238871766674282,0.483645349166498,-0.45975817249907,-170.079028899262,"CHH","Os03g0682600","promoter","ARGONAUTE 11","Protein argonaute 11 && sp|Q10F39|AGO11_ORYSJ Protein argonaute 11 OS=Oryza sativa subsp. japonica OX=39947 GN=AGO11 PE=2 SV=2 && PF02170:PAZ domain|PF16486:N-terminal domain of argonaute|PF16488:Argonaute linker 2 domain|PF16487:Mid domain of argonaute|PF02171:Piwi domain"]
[3,27185291,27185384,94,6,0.370715789457833,0.81388655982357,-0.443170770365737,-26.5362103105713,"CHG","Os03g0682666","intron","Os03g0682666","Hypothetical gene && - && -"]
[3,27204087,27204636,550,74,0.307484244194274,0.47748780301432,-0.170003558820046,-333.7631245372,"CG","3:27202230:27204230","CGI_shore"]
[3,27204087,27204636,550,74,0.307484244194274,0.47748780301432,-0.170003558820046,-333.7631245372,"CG","Target=(TCG)n:1-152;Class=Simple_repeat","repeat"]
[3,27204087,27204636,550,74,0.307484244194274,0.47748780301432,-0.170003558820046,-333.7631245372,"CG","3:27204231:27204636","CGI"]
[3,27204087,27204636,550,74,0.307484244194274,0.47748780301432,-0.170003558820046,-333.7631245372,"CG","Target=(TCG)n:1-89;Class=Simple_repeat","repeat"]
[3,27442559,27442795,237,75,0.144903121610107,0.520172818441945,-0.375269696831838,-654.465702687324,"CG","3:27441020:27459011","CGI"]
[3,27442559,27442795,237,75,0.144903121610107,0.520172818441945,-0.375269696831838,-654.465702687324,"CG","Os03g0687400","promoter","Os03g0687400","Ribosome-inactivating protein family protein && - && PF00161:Ribosome inactivating protein"]
[3,27442628,27442796,169,24,0.0340043231142615,0.254176904846734,-0.220172581732472,-121.417859175211,"CHG","3:27441020:27459011","CGI"]
[3,27442628,27442796,169,24,0.0340043231142615,0.254176904846734,-0.220172581732472,-121.417859175211,"CHG","Os03g0687400","promoter","Os03g0687400","Ribosome-inactivating protein family protein && - && PF00161:Ribosome inactivating protein"]
[3,27551295,27551406,112,53,0.0686368385708216,0.158151870173036,-0.0895150316022141,-240.930712441944,"CHH","Os03g0690000","promoter","Os03g0690000","Similar to Costars family protein && sp|A2XKU9|COSA_ORYSI Costars family protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012692 PE=3 SV=1 && PF14705:Costars"]
[3,27551295,27551406,112,53,0.0686368385708216,0.158151870173036,-0.0895150316022141,-240.930712441944,"CHH","Os03g0689900","promoter","Os03g0689900","Similar to predicted protein && - && -"]
[3,27551295,27551406,112,53,0.0686368385708216,0.158151870173036,-0.0895150316022141,-240.930712441944,"CHH","3:27551195:27553196","CGI_shore"]
[3,27622979,27623098,120,22,0.539973922356222,0.893742216305052,-0.35376829394883,-108.638087595436,"CG","3:27622977:27624077","CGI"]
[3,27947334,27947512,179,60,0.0123205410583111,0.0809192190129678,-0.0685986779546566,-291.183002849258,"CHH","3:27946998:27948999","CGI_shore"]
[3,27980081,27980585,505,11,0.459656342026252,0.727974496646925,-0.268318154620673,-50.9696804059689,"CHG","3:27964628:27988896","CGI"]
[3,27980755,27980920,166,17,0.613209208899906,0.802561094827152,-0.189351885927246,-89.9543657357732,"CHG","3:27964628:27988896","CGI"]
[3,28214829,28214882,54,4,0.418201795337471,0.860457127059065,-0.442255331721594,-19.9551295895896,"CHG","3:28213714:28215715","CGI_shore"]
[3,28290470,28290603,134,28,0.0786752970237457,0.287083207880534,-0.208407910856788,-129.060820988141,"CHH","3:28289889:28291890","CGI_shore"]
[3,28312638,28312815,178,47,0.0303837985934335,0.109563482820312,-0.0791796842268788,-262.007244251191,"CG","3:28311735:28314743","CGI"]
[3,28312638,28312815,178,47,0.0303837985934335,0.109563482820312,-0.0791796842268788,-262.007244251191,"CG","Os03g0704200","promoter","SET protein 17","Zinc finger, MYND-type domain containing protein && sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana OX=3702 GN=ASHR1 PE=1 SV=2 && -"]
[3,28312638,28312815,178,47,0.0303837985934335,0.109563482820312,-0.0791796842268788,-262.007244251191,"CG","Os03g0704400","promoter","Os03g0704400","Serine/threonine protein kinase domain containing protein && sp|Q84VX4|MPS1_ARATH Serine/threonine-protein kinase MPS1 OS=Arabidopsis thaliana OX=3702 GN=MPS1 PE=2 SV=1 && PF00069:Protein kinase domain"]
[3,28345781,28346064,284,58,0.337933085189987,0.661112351681559,-0.323179266491573,-370.274059611657,"CG","3:28339779:28346830","CGI"]
[3,28345829,28346071,243,44,0.277879455524894,0.5308883856812,-0.253008930156306,-235.881135819573,"CHG","3:28339779:28346830","CGI"]
[3,28559764,28559826,63,7,0.195587011841048,0.575482796155013,-0.379895784313965,-39.033392488861,"CHG","Os03g0708400","promoter","Os03g0708400","Protein of unknown function DUF1295 family protein && - && PF06966:Protein of unknown function (DUF1295)"]
[3,28559764,28559826,63,7,0.195587011841048,0.575482796155013,-0.379895784313965,-39.033392488861,"CHG","Os03g0708250","exon","Os03g0708250","Conserved hypothetical protein && - && -"]
[3,28559764,28559826,63,7,0.195587011841048,0.575482796155013,-0.379895784313965,-39.033392488861,"CHG","Os03g0708250","utr5","Os03g0708250","Conserved hypothetical protein && - && -"]
[3,28559764,28559826,63,7,0.195587011841048,0.575482796155013,-0.379895784313965,-39.033392488861,"CHG","3:28556643:28561287","CGI"]
[3,28776912,28777036,125,22,0.245524874560259,0.564302714832438,-0.318777840272179,-149.768886773211,"CG","3:28775123:28777124","CGI_shore"]
[3,28776912,28777036,125,22,0.245524874560259,0.564302714832438,-0.318777840272179,-149.768886773211,"CG","Os03g0712200","exon","Os03g0712200","Zinc finger, RanBP2-type domain containing protein && - && PF00641:Zn-finger in Ran binding protein and others"]
[3,29596034,29596085,52,22,0.0959753459556322,0.290542149917974,-0.194566803962342,-107.45349406766,"CG","3:29595257:29596856","CGI"]
[3,29596034,29596085,52,22,0.0959753459556322,0.290542149917974,-0.194566803962342,-107.45349406766,"CG","Os03g0726900","promoter","Os03g0726900","Similar to Ubiquitin ligase protein FANCL && sp|Q9CR14|FANCL_MOUSE E3 ubiquitin-protein ligase FANCL OS=Mus musculus OX=10090 GN=Fancl PE=1 SV=1 && -"]
[3,29635792,29635880,89,15,0.0480404386683583,0.2494675408,-0.201427102131642,-77.5147327522694,"CHH","3:29635190:29637190","CGI_shore"]
[3,29635792,29635880,89,15,0.0480404386683583,0.2494675408,-0.201427102131642,-77.5147327522694,"CHH","3:29635689:29635938","CGI"]
[3,29669704,29669779,76,6,0.0674696753835973,0.306937114481334,-0.239467439097737,-28.4195295144534,"CHG","3:29668820:29670821","CGI_shore"]
[3,29710595,29710728,134,36,0.564789839448764,0.811344557817722,-0.246554718368957,-170.302403087728,"CG","Os03g0727900","intron","Os03g0727900","GTP1/OBG domain containing protein && sp|Q0WTB4|Y3725_ARATH GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g49725 PE=2 SV=2 && PF16360:GTP-binding GTPase Middle Region|PF01926:50S ribosome-binding GTPase|PF13167:GTP-binding GTPase N-terminal"]
[3,29710595,29710728,134,36,0.564789839448764,0.811344557817722,-0.246554718368957,-170.302403087728,"CG","3:29684243:29717086","CGI"]
[3,29847473,29847679,207,31,0.0614912401267087,0.257096506970377,-0.195605266843669,-187.332125234097,"CHG","Os03g0730000","promoter","Os03g0730000","Lecithin:cholesterol acyltransferase family protein && sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana OX=3702 GN=LCAT1 PE=2 SV=1 && PF02450:Lecithin:cholesterol acyltransferase"]
[3,29847473,29847679,207,31,0.0614912401267087,0.257096506970377,-0.195605266843669,-187.332125234097,"CHG","Os03g0730100","exon","Os03g0730100","Hypothetical protein && sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana OX=3702 GN=LCAT1 PE=2 SV=1 && -"]
[3,29847473,29847679,207,31,0.0614912401267087,0.257096506970377,-0.195605266843669,-187.332125234097,"CHG","Os03g0730100","utr3","Os03g0730100","Hypothetical protein && sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana OX=3702 GN=LCAT1 PE=2 SV=1 && -"]
[3,29847474,29847756,283,80,0.139299917005506,0.381807650286331,-0.242507733280825,-657.414015330067,"CG","Os03g0730000","promoter","Os03g0730000","Lecithin:cholesterol acyltransferase family protein && sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana OX=3702 GN=LCAT1 PE=2 SV=1 && PF02450:Lecithin:cholesterol acyltransferase"]
[3,29847474,29847756,283,80,0.139299917005506,0.381807650286331,-0.242507733280825,-657.414015330067,"CG","Os03g0730100","exon","Os03g0730100","Hypothetical protein && sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana OX=3702 GN=LCAT1 PE=2 SV=1 && -"]
[3,29847474,29847756,283,80,0.139299917005506,0.381807650286331,-0.242507733280825,-657.414015330067,"CG","Os03g0730100","utr3","Os03g0730100","Hypothetical protein && sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana OX=3702 GN=LCAT1 PE=2 SV=1 && -"]
[3,29931125,29931225,101,20,0.0583517945668147,0.190673229158993,-0.132321434592178,-160.47404754108,"CHH","Os03g0731100","promoter","Os03g0731100","Photosystem I reaction centre subunit N family protein && - && PF05479:Photosystem I reaction centre subunit N (PSAN or PSI-N)"]
[3,29931125,29931225,101,20,0.0583517945668147,0.190673229158993,-0.132321434592178,-160.47404754108,"CHH","Os03g0731025","promoter","Os03g0731025","Hypothetical gene && sp|Q65XS5|BC10_ORYSJ Glycosyltransferase BC10 OS=Oryza sativa subsp. japonica OX=39947 GN=BC10 PE=1 SV=1 && PF02485:Core-2/I-Branching enzyme"]
[3,30374514,30374698,185,24,0.103618963590738,0.261746653653562,-0.158127690062825,-119.937411330731,"CHG","3:30373578:30375578","CGI_shore"]
[3,30424851,30424954,104,13,0.28707965169718,0.483487808634945,-0.196408156937765,-60.8073509003819,"CG","Os03g0741400","exon","WRKY GENE 121","Similar to SUSIBA2 && sp|Q32SG4|WRKY1_MAIZE Protein WRKY1 OS=Zea mays OX=4577 PE=1 SV=1 && PF03106:WRKY DNA -binding domain|PF10533:Plant zinc cluster domain"]
[3,30424851,30424954,104,13,0.28707965169718,0.483487808634945,-0.196408156937765,-60.8073509003819,"CG","Os03g0741400","utr3","WRKY GENE 121","Similar to SUSIBA2 && sp|Q32SG4|WRKY1_MAIZE Protein WRKY1 OS=Zea mays OX=4577 PE=1 SV=1 && PF03106:WRKY DNA -binding domain|PF10533:Plant zinc cluster domain"]
[3,30447931,30448310,380,110,0.173274912508693,0.373607146041712,-0.200332233533019,-908.396074955389,"CG","3:30443989:30452124","CGI"]
[3,30448395,30448450,56,4,0.271681493343621,0.473386582918483,-0.201705089574862,-19.4698892315143,"CG","3:30443989:30452124","CGI"]
[3,30534048,30534108,61,4,0.544926471921151,0.764782040751543,-0.219855568830392,-22.1335093242331,"CG","3:30532739:30534739","CGI_shore"]
[3,30534048,30534108,61,4,0.544926471921151,0.764782040751543,-0.219855568830392,-22.1335093242331,"CG","Os03g0743900","intron","ATP sulfurylase","Similar to ATP sulfurylase && sp|O23324|APS3_ARATH ATP-sulfurylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APS3 PE=1 SV=1 && PF14306:PUA-like domain|PF01747:ATP-sulfurylase"]
[3,30836074,30836179,106,27,0.0535840690047096,0.198826669338463,-0.145242600333754,-131.869203963959,"CG","Os03g0749200","exon","Os03g0749200","Hypothetical protein && sp|A7LXU3|BGH3B_BACO1 Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1 && -"]
[3,30836074,30836179,106,27,0.0535840690047096,0.198826669338463,-0.145242600333754,-131.869203963959,"CG","Os03g0749200","utr3","Os03g0749200","Hypothetical protein && sp|A7LXU3|BGH3B_BACO1 Beta-glucosidase BoGH3B OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153) OX=411476 GN=BACOVA_02659 PE=1 SV=1 && -"]
[3,30836074,30836179,106,27,0.0535840690047096,0.198826669338463,-0.145242600333754,-131.869203963959,"CG","Os03g0749100","exon","Os03g0749100","Similar to Beta-glucanase && sp|Q23892|GLUA_DICDI Lysosomal beta glucosidase OS=Dictyostelium discoideum OX=44689 GN=gluA PE=1 SV=2 && PF00933:Glycosyl hydrolase family 3 N terminal domain|PF01915:Glycosyl hydrolase family 3 C-terminal domain"]
[3,30836074,30836179,106,27,0.0535840690047096,0.198826669338463,-0.145242600333754,-131.869203963959,"CG","3:30830371:30838758","CGI"]
[3,30924740,30924936,197,43,0.0651521906568812,0.305555337966778,-0.240403147309897,-303.42020483663,"CG","3:30924467:30925474","CGI"]
[3,30924740,30924936,197,43,0.0651521906568812,0.305555337966778,-0.240403147309897,-303.42020483663,"CG","Target=(CGA)n:1-156;Class=Simple_repeat","repeat"]
[3,30999243,30999530,288,88,0.491656007915359,0.783144607012436,-0.291488599097078,-770.262705694361,"CG","3:30998556:30999889","CGI"]
[3,30999243,30999530,288,88,0.491656007915359,0.783144607012436,-0.291488599097078,-770.262705694361,"CG","3:30997389:30999390","CGI_shore"]
[3,30999243,30999530,288,88,0.491656007915359,0.783144607012436,-0.291488599097078,-770.262705694361,"CG","3:30998235:31000235","CGI_shore"]
[3,31109550,31109611,62,7,0.356748408093883,0.686833751086779,-0.330085342992896,-34.6896683290646,"CHG","3:31109350:31111351","CGI_shore"]
[3,31300002,31300167,166,41,0.41934904260397,0.592320664764776,-0.172971622160807,-203.063968030815,"CG","Os03g0757400","utr3","Os03g0757400","Hypothetical protein && sp|Q9SGA8|U83A1_ARATH UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana OX=3702 GN=UGT83A1 PE=2 SV=1 && -"]
[3,31300002,31300167,166,41,0.41934904260397,0.592320664764776,-0.172971622160807,-203.063968030815,"CG","Os03g0757400","exon","Os03g0757400","Hypothetical protein && sp|Q9SGA8|U83A1_ARATH UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana OX=3702 GN=UGT83A1 PE=2 SV=1 && -"]
[3,31300002,31300167,166,41,0.41934904260397,0.592320664764776,-0.172971622160807,-203.063968030815,"CG","3:31299313:31300491","CGI"]
[3,31300002,31300167,166,41,0.41934904260397,0.592320664764776,-0.172971622160807,-203.063968030815,"CG","Os03g0757500","exon","Os03g0757500","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9SGA8|U83A1_ARATH UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana OX=3702 GN=UGT83A1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[3,31301539,31301608,70,12,0.314071267263791,0.627588265707394,-0.313516998443603,-54.6642215953519,"CG","3:31300491:31302492","CGI_shore"]
[3,31301539,31301608,70,12,0.314071267263791,0.627588265707394,-0.313516998443603,-54.6642215953519,"CG","Os03g0757600","promoter","Os03g0757600","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9SGA8|U83A1_ARATH UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana OX=3702 GN=UGT83A1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[3,31301539,31301608,70,12,0.314071267263791,0.627588265707394,-0.313516998443603,-54.6642215953519,"CG","Os03g0757400","promoter","Os03g0757400","Hypothetical protein && sp|Q9SGA8|U83A1_ARATH UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana OX=3702 GN=UGT83A1 PE=2 SV=1 && -"]
[3,31897286,31897425,140,50,0.0696767126262826,0.150894669796238,-0.0812179571699554,-218.876163697405,"CHH","3:31896098:31898099","CGI_shore"]
[3,31931473,31931612,140,11,0.351574389325049,0.565298190856959,-0.21372380153191,-49.5162243767203,"CG","Os03g0770800","exon","CELLULOSE SYNTHASE LIKE C9","CSLC9 && sp|Q6AU53|CSLC9_ORYSJ Probable xyloglucan glycosyltransferase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLC9 PE=2 SV=2 && PF13641:Glycosyltransferase like family 2"]
[3,31931473,31931612,140,11,0.351574389325049,0.565298190856959,-0.21372380153191,-49.5162243767203,"CG","3:31931248:31933248","CGI_shore"]
[3,31931473,31931612,140,11,0.351574389325049,0.565298190856959,-0.21372380153191,-49.5162243767203,"CG","Os03g0770851","promoter","Os03g0770851","Hypothetical protein && sp|Q6AU53|CSLC9_ORYSJ Probable xyloglucan glycosyltransferase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=CSLC9 PE=2 SV=2 && -"]
[3,31979184,31979307,124,36,0.0324926515371522,0.14393093003812,-0.111438278500968,-246.951591863924,"CHH","3:31977353:31979353","CGI_shore"]
[3,31979184,31979307,124,36,0.0324926515371522,0.14393093003812,-0.111438278500968,-246.951591863924,"CHH","3:31977982:31979983","CGI_shore"]
[3,31992632,31992744,113,29,0.0223283642698462,0.137486341874372,-0.115157977604526,-205.51652327467,"CHH","3:31991579:31993580","CGI_shore"]
[3,32124043,32124145,103,34,0.042915129093047,0.227587325022752,-0.184672195929705,-167.27226121157,"CHH","3:32122524:32124525","CGI_shore"]
[3,32397014,32397092,79,35,0.0677585160539351,0.174963535070379,-0.107205019016444,-125.143149416981,"CG","Os03g0781200","exon","Os03g0781200","Hypothetical protein && - && -"]
[3,32397014,32397092,79,35,0.0677585160539351,0.174963535070379,-0.107205019016444,-125.143149416981,"CG","Os03g0781200","utr3","Os03g0781200","Hypothetical protein && - && -"]
[3,32397014,32397092,79,35,0.0677585160539351,0.174963535070379,-0.107205019016444,-125.143149416981,"CG","3:32396790:32397162","CGI"]
[3,32397014,32397092,79,35,0.0677585160539351,0.174963535070379,-0.107205019016444,-125.143149416981,"CG","Os03g0781400","exon","Os03g0781400","Ribose 5-phosphate isomerase family protein && sp|Q9FI13|RPI4_ARATH Probable ribose-5-phosphate isomerase 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPI4 PE=2 SV=1 && PF06026:Ribose 5-phosphate isomerase A (phosphoriboisomerase A)"]
[3,32411053,32411140,88,7,0.236939627585802,0.61618828425195,-0.379248656666149,-34.4807276906066,"CHG","ENSRNA049446523","promoter","tRNA-Ala","tRNA-Ala for anticodon AGC && - && -"]
[3,32827417,32827496,80,25,0.235646083671343,0.40406439771065,-0.168418314039307,-120.926450971799,"CG","Os03g0789600","exon","Os03g0789600","Conserved hypothetical protein && - && -"]
[3,32827417,32827496,80,25,0.235646083671343,0.40406439771065,-0.168418314039307,-120.926450971799,"CG","3:32826781:32829075","CGI"]
[3,32827417,32827496,80,25,0.235646083671343,0.40406439771065,-0.168418314039307,-120.926450971799,"CG","Os03g0789600","utr5","Os03g0789600","Conserved hypothetical protein && - && -"]
[3,33266460,33266516,57,6,0.432104216697656,0.782081678169373,-0.349977461471717,-42.3280524032834,"CG","3:33265189:33267189","CGI_shore"]
[3,33266460,33266516,57,6,0.432104216697656,0.782081678169373,-0.349977461471717,-42.3280524032834,"CG","Os03g0798200","promoter","RING finger protein","RING Ub E3 ligase, Positive regulator of salt and osmotic stress toleranc && sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 && -"]
[3,33545486,33545564,79,19,0.289753916025857,0.755087454007555,-0.465333537981698,-106.102563344785,"CG","3:33543891:33545565","CGI"]
[3,33545486,33545564,79,19,0.289753916025857,0.755087454007555,-0.465333537981698,-106.102563344785,"CG","Os03g0803800","promoter","Os03g0803800","Conserved hypothetical protein && sp|F4JTS8|NOV_ARATH Protein NO VEIN OS=Arabidopsis thaliana OX=3702 GN=NOV PE=1 SV=1 && -"]
[3,33602626,33602729,104,14,0.0797961590319061,0.310544319919044,-0.230748160887138,-69.722589561366,"CHH","3:33600972:33602972","CGI_shore"]
[3,33602626,33602729,104,14,0.0797961590319061,0.310544319919044,-0.230748160887138,-69.722589561366,"CHH","Os03g0804900","promoter","Os03g0804900","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q66PF2|URT1_FRAAN Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa OX=3747 GN=GT4 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[3,33602626,33602729,104,14,0.0797961590319061,0.310544319919044,-0.230748160887138,-69.722589561366,"CHH","3:33601023:33603024","CGI_shore"]
[3,33616274,33616399,126,30,0.207441276355591,0.42309401764686,-0.21565274129127,-128.92530974052,"CHG","3:33615174:33617174","CGI_shore"]
[3,33616274,33616399,126,30,0.207441276355591,0.42309401764686,-0.21565274129127,-128.92530974052,"CHG","Os03g0805200","exon","RNA helicase 37","Similar to RNA helicase (Fragment) && sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1 && PF00271:Helicase conserved C-terminal domain|PF00270:DEAD/DEAH box helicase"]
[3,33703954,33704088,135,16,0.208867041057337,0.692048956472413,-0.483181915415076,-99.5619193291805,"CHG","3:33702378:33704379","CGI_shore"]
[3,33879521,33879592,72,5,0.617037023657617,0.747150622511116,-0.130113598853499,-22.5706728340883,"CG","3:33878288:33880289","CGI_shore"]
[3,33879521,33879592,72,5,0.617037023657617,0.747150622511116,-0.130113598853499,-22.5706728340883,"CG","3:33879291:33880242","CGI"]
[3,34436626,34436693,68,11,0.0304321550941494,0.134973753704836,-0.104541598610687,-51.8861848980142,"CHG","3:34435597:34437597","CGI_shore"]
[3,34436626,34436693,68,11,0.0304321550941494,0.134973753704836,-0.104541598610687,-51.8861848980142,"CHG","Os03g0820700","intron","Os03g0820700","Zinc finger, CCHC-type domain containing protein && - && PF00098:Zinc knuckle"]
[3,34443267,34443386,120,19,0.0104260979361797,0.0881823768443587,-0.077756278908179,-85.831528067785,"CHG","3:34442187:34444187","CGI_shore"]
[3,34443267,34443386,120,19,0.0104260979361797,0.0881823768443587,-0.077756278908179,-85.831528067785,"CHG","Os03g0821000","exon","Os03g0821000","Hypothetical protein && - && -"]
[3,34443267,34443386,120,19,0.0104260979361797,0.0881823768443587,-0.077756278908179,-85.831528067785,"CHG","Os03g0821000","utr3","Os03g0821000","Hypothetical protein && - && -"]
[3,34443267,34443386,120,19,0.0104260979361797,0.0881823768443587,-0.077756278908179,-85.831528067785,"CHG","Os03g0820900","exon","Os03g0820900","Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein && sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens OX=9606 GN=SEC14L5 PE=1 SV=3 && -"]
[3,34464205,34464332,128,38,0.0260595237680006,0.139310538366518,-0.113251014598517,-217.180855942035,"CHH","Os03g0821250","promoter","Os03g0821250","Conserved hypothetical protein && - && -"]
[3,34464205,34464332,128,38,0.0260595237680006,0.139310538366518,-0.113251014598517,-217.180855942035,"CHH","Os03g0821250","TSS","Os03g0821250","Conserved hypothetical protein && - && -"]
[3,34464205,34464332,128,38,0.0260595237680006,0.139310538366518,-0.113251014598517,-217.180855942035,"CHH","Os03g0821250","utr5","Os03g0821250","Conserved hypothetical protein && - && -"]
[3,34464205,34464332,128,38,0.0260595237680006,0.139310538366518,-0.113251014598517,-217.180855942035,"CHH","Os03g0821250","exon","Os03g0821250","Conserved hypothetical protein && - && -"]
[3,34652891,34652957,67,10,0.275628069931043,0.477917400847103,-0.20228933091606,-47.5014407553855,"CHG","3:34650895:34652896","CGI_shore"]
[3,34652891,34652957,67,10,0.275628069931043,0.477917400847103,-0.20228933091606,-47.5014407553855,"CHG","3:34651643:34654770","CGI"]
[3,34888591,34888690,100,12,0.00651269313667,0.300176852310968,-0.293664159174298,-76.3945917237826,"CHH","3:34887553:34889553","CGI_shore"]
[3,35178890,35179023,134,19,0.0885972899702833,0.2635508203867,-0.174953530416416,-98.7831862379447,"CG","Os03g0837100","promoter","CELLULOSE SYNTHASE A5","Similar to Cellulose synthase-6 && sp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica OX=39946 GN=CESA5 PE=3 SV=1 && PF03552:Cellulose synthase|PF14569:Zinc-binding RING-finger"]
[3,35178890,35179023,134,19,0.0885972899702833,0.2635508203867,-0.174953530416416,-98.7831862379447,"CG","3:35178539:35180540","CGI_shore"]
[3,35178890,35179023,134,19,0.0885972899702833,0.2635508203867,-0.174953530416416,-98.7831862379447,"CG","Os03g0837100","exon","CELLULOSE SYNTHASE A5","Similar to Cellulose synthase-6 && sp|A2XNT2|CESA5_ORYSI Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica OX=39946 GN=CESA5 PE=3 SV=1 && PF03552:Cellulose synthase|PF14569:Zinc-binding RING-finger"]
[3,35329760,35329864,105,36,0.00734681538224261,0.0644717850310968,-0.0571249696488542,-210.558539065858,"CHH","3:35327270:35334142","CGI"]
[3,35548914,35549057,144,27,0.0243526842194513,0.141321620973167,-0.116968936753716,-153.844487568934,"CHH","Os03g0845300","promoter","Os03g0845300","Hypothetical conserved gene && - && -"]
[3,35548914,35549057,144,27,0.0243526842194513,0.141321620973167,-0.116968936753716,-153.844487568934,"CHH","3:35548239:35550240","CGI_shore"]
[3,36176389,36176490,102,33,0.0126861275405731,0.109435861606965,-0.0967497340663919,-163.742021433218,"CHH","Os03g0857200","TES","Os03g0857200","Conserved hypothetical protein && - && -"]
[3,36176389,36176490,102,33,0.0126861275405731,0.109435861606965,-0.0967497340663919,-163.742021433218,"CHH","Os03g0857200","exon","Os03g0857200","Conserved hypothetical protein && - && -"]
[3,36176389,36176490,102,33,0.0126861275405731,0.109435861606965,-0.0967497340663919,-163.742021433218,"CHH","Os03g0857200","utr3","Os03g0857200","Conserved hypothetical protein && - && -"]
[3,36176389,36176490,102,33,0.0126861275405731,0.109435861606965,-0.0967497340663919,-163.742021433218,"CHH","3:36175327:36177328","CGI_shore"]
[3,36176389,36176490,102,33,0.0126861275405731,0.109435861606965,-0.0967497340663919,-163.742021433218,"CHH","Os03g0857301","promoter","Os03g0857301","Hypothetical protein && - && -"]
[3,36263289,36263374,86,25,0.0114630390537485,0.11938259287146,-0.107919553817712,-177.969642817585,"CHH","3:36262717:36264718","CGI_shore"]
[4,65408,65468,61,15,0.635432690593026,0.827101403978603,-0.191668713385578,-58.4234816965416,"CG","4:58987:66368","CGI"]
[4,441573,441704,132,20,0.00801970757773192,0.233400108612417,-0.225380401034685,-110.798327296938,"CHH","4:439833:441833","CGI_shore"]
[4,567222,567536,315,62,0.547157646950059,0.777319878777615,-0.230162231827556,-379.878992265064,"CG","4:552171:570904","CGI"]
[4,843007,843181,175,33,0.30496589703339,0.505347069340535,-0.200381172307145,-157.116694025793,"CHG","4:842439:844025","CGI"]
[4,843007,843181,175,33,0.30496589703339,0.505347069340535,-0.200381172307145,-157.116694025793,"CHG","4:842736:844736","CGI_shore"]
[4,893440,893572,133,18,0.333985384298663,0.668490081378252,-0.334504697079589,-75.4440340787945,"CHG","4:891074:896340","CGI"]
[4,1126594,1126696,103,14,0.508524186118195,0.713822521154907,-0.205298335036711,-66.2583439735996,"CG","Os04g0118900","promoter","Os04g0118900","Similar to Arginine/serine-rich splicing factor 1 variant 2 && sp|P92964|SRS31_ARATH Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[4,1126594,1126696,103,14,0.508524186118195,0.713822521154907,-0.205298335036711,-66.2583439735996,"CG","4:1125040:1127041","CGI_shore"]
[4,1126594,1126696,103,14,0.508524186118195,0.713822521154907,-0.205298335036711,-66.2583439735996,"CG","Os04g0119000","exon","Os04g0119000","Similar to H0716A07.5 protein && - && -"]
[4,1126594,1126696,103,14,0.508524186118195,0.713822521154907,-0.205298335036711,-66.2583439735996,"CG","Os04g0119000","utr3","Os04g0119000","Similar to H0716A07.5 protein && - && -"]
[4,1395019,1395082,64,6,0.175947982623715,0.601225759136384,-0.425277776512668,-26.1076877796999,"CHG","4:1393256:1406083","CGI"]
[4,1943098,1943195,98,11,0.652068557892446,0.873330309951893,-0.221261752059448,-66.3740500978657,"CG","4:1941185:1943186","CGI_shore"]
[4,1943098,1943195,98,11,0.652068557892446,0.873330309951893,-0.221261752059448,-66.3740500978657,"CG","4:1942622:1943366","CGI"]
[4,2080379,2080496,118,19,0.263198044516676,0.56125022603355,-0.298052181516874,-113.682657316313,"CHG","4:2079240:2081240","CGI_shore"]
[4,2381751,2381887,137,11,0.435869231060371,0.825611889783966,-0.389742658723596,-54.2703189801709,"CG","4:2373779:2384766","CGI"]
[4,2381752,2381830,79,4,0.263520676287684,0.703797623385041,-0.440276947097357,-20.4028358304482,"CHG","4:2373779:2384766","CGI"]
[4,2833421,2833568,148,70,0.0152129145618001,0.0783752984600742,-0.0631623838982741,-340.658740915538,"CHH","4:2832077:2834077","CGI_shore"]
[4,2833421,2833568,148,70,0.0152129145618001,0.0783752984600742,-0.0631623838982741,-340.658740915538,"CHH","4:2833370:2835371","CGI_shore"]
[4,3117365,3117489,125,12,0.235086643656162,0.643844088909157,-0.408757445252994,-57.0194317704922,"CHG","4:3116413:3118413","CGI_shore"]
[4,3239898,3239970,73,13,0.0689509694940452,0.20699293282436,-0.138041963330315,-71.846468145315,"CHH","4:3239686:3241687","CGI_shore"]
[4,3239898,3239970,73,13,0.0689509694940452,0.20699293282436,-0.138041963330315,-71.846468145315,"CHH","Os04g0146300","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 130","Similar to OSIGBa0140L04.3 protein && sp|Q9LXA5|LRK91_ARATH L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 && -"]
[4,3257017,3257092,76,10,0.219380529902766,0.450019596026573,-0.230639066123808,-44.5428366462084,"CHG","4:3255032:3257032","CGI_shore"]
[4,3257017,3257092,76,10,0.219380529902766,0.450019596026573,-0.230639066123808,-44.5428366462084,"CHG","4:3257033:3257291","CGI"]
[4,3257035,3257110,76,12,0.671536958421274,0.885066838252199,-0.213529879830925,-50.1601822364197,"CG","4:3257033:3257291","CGI"]
[4,3314371,3314450,80,14,0.518732976690443,0.781258370346605,-0.262525393656161,-62.1023481423352,"CG","4:3312105:3318110","CGI"]
[4,3316308,3316405,98,24,0.543307174585713,0.831481100084351,-0.288173925498638,-106.819113525836,"CG","4:3312105:3318110","CGI"]
[4,3341232,3341293,62,11,0.604182708530648,0.734431991575261,-0.130249283044612,-39.8864056177319,"CHG","4:3339253:3341254","CGI_shore"]
[4,3569142,3569293,152,42,0.0111718666119485,0.124992966441021,-0.113821099829073,-240.372561193324,"CHH","4:3567586:3569587","CGI_shore"]
[4,3644661,3644770,110,35,0.516511883018073,0.806492079258911,-0.289980196240837,-174.841602937503,"CG","4:3640192:3644983","CGI"]
[4,3710982,3711115,134,43,0.0311478329828286,0.11431887359543,-0.0831710406126013,-206.63299232123,"CHH","4:3708275:3713868","CGI"]
[4,3883471,3883616,146,31,0.526195113221214,0.820078274548094,-0.29388316132688,-143.896029640676,"CG","4:3883332:3883745","CGI"]
[4,3883471,3883616,146,31,0.526195113221214,0.820078274548094,-0.29388316132688,-143.896029640676,"CG","4:3881859:3883860","CGI_shore"]
[4,3883552,3883649,98,17,0.303456740879239,0.613862544923758,-0.310405804044519,-70.9893157042774,"CHG","4:3883332:3883745","CGI"]
[4,3883552,3883649,98,17,0.303456740879239,0.613862544923758,-0.310405804044519,-70.9893157042774,"CHG","4:3881859:3883860","CGI_shore"]
[4,3959676,3959829,154,42,0.361835042852657,0.486984579862479,-0.125149537009823,-188.701040391259,"CG","4:3957686:3959687","CGI_shore"]
[4,3959676,3959829,154,42,0.361835042852657,0.486984579862479,-0.125149537009823,-188.701040391259,"CG","4:3958815:3959829","CGI"]
[4,4231518,4231597,80,16,0.473397811450642,0.645061126366873,-0.171663314916231,-73.3611593418167,"CHG","4:4230262:4232263","CGI_shore"]
[4,4653258,4653682,425,33,0.00996969527753832,0.175707551971725,-0.165737856694186,-174.745400249752,"CHH","4:4652482:4654483","CGI_shore"]
[4,4653258,4653682,425,33,0.00996969527753832,0.175707551971725,-0.165737856694186,-174.745400249752,"CHH","Os04g0168000","promoter","Os04g0168000","Conserved hypothetical protein && - && -"]
[4,4670290,4670395,106,36,0.0151954301346802,0.0877702130462351,-0.0725747829115549,-176.442314999043,"CHH","4:4669871:4671872","CGI_shore"]
[4,4670290,4670395,106,36,0.0151954301346802,0.0877702130462351,-0.0725747829115549,-176.442314999043,"CHH","4:4670287:4672287","CGI_shore"]
[4,4962982,4963085,104,10,0.216832686012593,0.741379752915277,-0.524547066902684,-50.4399358490666,"CHG","4:4961102:4963920","CGI"]
[4,4962982,4963085,104,10,0.216832686012593,0.741379752915277,-0.524547066902684,-50.4399358490666,"CHG","4:4962857:4964857","CGI_shore"]
[4,5600115,5600202,88,18,0.106579506227494,0.258764396856979,-0.152184890629485,-93.6487044124173,"CHH","Os04g0182300","promoter","Subtilisin 40, SUBTILISIN 40","Similar to OSIGBa0101K10.5 protein && sp|A9QY38|SBT4_LOTJA Subtilisin-like protease 4 OS=Lotus japonicus OX=34305 GN=SBTM4 PE=2 SV=1 && PF00082:Subtilase family|PF17766:Fibronectin type-III domain"]
[4,5600115,5600202,88,18,0.106579506227494,0.258764396856979,-0.152184890629485,-93.6487044124173,"CHH","4:5600040:5602041","CGI_shore"]
[4,5634047,5634134,88,24,0.0111459160907835,0.0490249091195061,-0.0378789930287225,-111.361381498709,"CHH","4:5632912:5634912","CGI_shore"]
[4,5690732,5690838,107,39,0.671700549157092,0.839933193275364,-0.168232644118272,-168.407652080412,"CG","Os04g0183401","promoter","Os04g0183401","Hypothetical protein && sp|A0A1P8B760|AMI4G_ARATH Probable amidase At4g34880 OS=Arabidopsis thaliana OX=3702 GN=At4g34880 PE=2 SV=1 && -"]
[4,5690732,5690838,107,39,0.671700549157092,0.839933193275364,-0.168232644118272,-168.407652080412,"CG","4:5689881:5691542","CGI"]
[4,6063143,6063207,65,4,0.33348670115027,0.780455688123762,-0.446968986973492,-24.4911154236361,"CHG","4:6062555:6064555","CGI_shore"]
[4,6506181,6506262,82,5,0.2101205953094,0.498212358262922,-0.288091762953522,-25.5196370889855,"CHG","4:6505320:6507321","CGI_shore"]
[4,6589745,6589814,70,10,0.0423634381770673,0.225158256480256,-0.182794818303189,-54.7205211395715,"CG","4:6584927:6613846","CGI"]
[4,6666568,6666696,129,51,0.0205550161050501,0.0605404918573101,-0.03998547575226,-249.893720594247,"CHH","4:6665369:6667370","CGI_shore"]
[4,6666568,6666696,129,51,0.0205550161050501,0.0605404918573101,-0.03998547575226,-249.893720594247,"CHH","4:6665574:6667574","CGI_shore"]
[4,6747140,6747317,178,56,0.0152423441980463,0.0930369303503042,-0.0777945861522579,-237.41489023497,"CHH","4:6746868:6748868","CGI_shore"]
[4,6945945,6945999,55,11,0.25535003831632,0.580401682223191,-0.325051643906871,-55.4594567516359,"CHG","4:6945382:6946369","CGI"]
[4,7157342,7157403,62,7,0.613361690831989,0.811270382621407,-0.197908691789417,-30.3499864336447,"CG","Os04g0206500","promoter","Os04g0206500","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|M0Y4P1|UGT13_HORVV UDP-glucosyltransferase UGT13248 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[4,7157342,7157403,62,7,0.613361690831989,0.811270382621407,-0.197908691789417,-30.3499864336447,"CG","4:7156790:7158790","CGI_shore"]
[4,7157342,7157403,62,7,0.613361690831989,0.811270382621407,-0.197908691789417,-30.3499864336447,"CG","Os04g0206600","exon","UDP-glucuronyl transferase, UDP-glucosyltransferase","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q7XT97|UGT79_ORYSJ UDP-glycosyltransferase 79 OS=Oryza sativa subsp. japonica OX=39947 GN=UGT79 PE=1 SV=2 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[4,7157342,7157403,62,7,0.613361690831989,0.811270382621407,-0.197908691789417,-30.3499864336447,"CG","Os04g0206650","utr5","Os04g0206650","Hypothetical protein && sp|Q7XT97|UGT79_ORYSJ UDP-glycosyltransferase 79 OS=Oryza sativa subsp. japonica OX=39947 GN=UGT79 PE=1 SV=2 && -"]
[4,7157342,7157403,62,7,0.613361690831989,0.811270382621407,-0.197908691789417,-30.3499864336447,"CG","Os04g0206650","exon","Os04g0206650","Hypothetical protein && sp|Q7XT97|UGT79_ORYSJ UDP-glycosyltransferase 79 OS=Oryza sativa subsp. japonica OX=39947 GN=UGT79 PE=1 SV=2 && -"]
[4,7228647,7228703,57,11,0.417693348541841,0.655258208359001,-0.237564859817159,-50.277547814648,"CHG","4:7227240:7237912","CGI"]
[4,7431767,7431848,82,22,0.0209517422373546,0.101737085796994,-0.0807853435596391,-116.730601333206,"CHH","4:7429835:7431835","CGI_shore"]
[4,7431767,7431848,82,22,0.0209517422373546,0.101737085796994,-0.0807853435596391,-116.730601333206,"CHH","Os04g0210800","promoter","Os04g0210800","Conserved hypothetical protein && - && -"]
[4,7431767,7431848,82,22,0.0209517422373546,0.101737085796994,-0.0807853435596391,-116.730601333206,"CHH","4:7431836:7434344","CGI"]
[4,7450443,7450494,52,4,0.292375330845021,0.672717331725455,-0.380342000880434,-19.3554828240117,"CHG","4:7449082:7451083","CGI_shore"]
[4,7481394,7481463,70,23,0.107366032327261,0.278942863432991,-0.17157683110573,-132.054950761189,"CHH","4:7481345:7483346","CGI_shore"]
[4,7733114,7733435,322,81,0.567025748872402,0.836535884710742,-0.269510135838341,-435.529649682523,"CG","4:7700428:7791793","CGI"]
[4,7758145,7758324,180,69,0.660091681902509,0.841358172833842,-0.181266490931334,-401.599186342181,"CG","Target=(TCG)n:2-153;Class=Simple_repeat","repeat"]
[4,7758145,7758324,180,69,0.660091681902509,0.841358172833842,-0.181266490931334,-401.599186342181,"CG","4:7700428:7791793","CGI"]
[4,7758243,7758333,91,14,0.250863091655655,0.535916700183372,-0.285053608527716,-72.5075666381708,"CHG","Target=(TCG)n:2-153;Class=Simple_repeat","repeat"]
[4,7758243,7758333,91,14,0.250863091655655,0.535916700183372,-0.285053608527716,-72.5075666381708,"CHG","4:7700428:7791793","CGI"]
[4,7959784,7959851,68,12,0.561425378358034,0.819594259129453,-0.258168880771419,-52.9024144031455,"CG","Os04g0219000","exon","Os04g0219000","Similar to cDNA, clone: J075169H23, full insert sequence && sp|Q9LY62|GMT1_ARATH Glycosylinositol phosphorylceramide mannosyl transferase 1 OS=Arabidopsis thaliana OX=3702 GN=GMT1 PE=1 SV=1 && -"]
[4,7959784,7959851,68,12,0.561425378358034,0.819594259129453,-0.258168880771419,-52.9024144031455,"CG","4:7959338:7960493","CGI"]
[4,8095784,8095881,98,12,0.439985432945013,0.824667198448618,-0.384681765503605,-62.692567651714,"CG","4:8094262:8096774","CGI"]
[4,8095784,8095881,98,12,0.439985432945013,0.824667198448618,-0.384681765503605,-62.692567651714,"CG","4:8095534:8097534","CGI_shore"]
[4,8166065,8166180,116,11,0.5990015273516,0.762497647575146,-0.163496120223546,-54.2713402809157,"CG","Os04g0222250","promoter","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8166065,8166180,116,11,0.5990015273516,0.762497647575146,-0.163496120223546,-54.2713402809157,"CG","4:8165228:8166679","CGI"]
[4,8166065,8166180,116,11,0.5990015273516,0.762497647575146,-0.163496120223546,-54.2713402809157,"CG","Os04g0222250","TSS","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8166065,8166180,116,11,0.5990015273516,0.762497647575146,-0.163496120223546,-54.2713402809157,"CG","Os04g0222250","utr5","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8166065,8166180,116,11,0.5990015273516,0.762497647575146,-0.163496120223546,-54.2713402809157,"CG","Os04g0222250","exon","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8166117,8166167,51,8,0.22791212604497,0.366139554099265,-0.138227428054295,-38.8955407805895,"CHG","Os04g0222250","promoter","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8166117,8166167,51,8,0.22791212604497,0.366139554099265,-0.138227428054295,-38.8955407805895,"CHG","4:8165228:8166679","CGI"]
[4,8166117,8166167,51,8,0.22791212604497,0.366139554099265,-0.138227428054295,-38.8955407805895,"CHG","Os04g0222250","TSS","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8166117,8166167,51,8,0.22791212604497,0.366139554099265,-0.138227428054295,-38.8955407805895,"CHG","Os04g0222250","utr5","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8166117,8166167,51,8,0.22791212604497,0.366139554099265,-0.138227428054295,-38.8955407805895,"CHG","Os04g0222250","exon","Os04g0222250","Hypothetical conserved gene && - && -"]
[4,8294626,8294711,86,11,0.470285901450867,0.69123611312367,-0.220950211672803,-44.7576553617261,"CHG","4:8286214:8296544","CGI"]
[4,8637259,8637368,110,25,0.0142587476041854,0.11954859621694,-0.105289848612755,-150.269348898039,"CHH","4:8635901:8639057","CGI"]
[4,8637259,8637368,110,25,0.0142587476041854,0.11954859621694,-0.105289848612755,-150.269348898039,"CHH","Os04g0229100","TES","CINNAMYL ALCOHOL DEHYDROGENASE 6","Similar to Sinapyl alcohol dehydrogenase && sp|Q7XWU3|CADH6_ORYSJ Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CAD6 PE=2 SV=2 && PF08240:Alcohol dehydrogenase GroES-like domain|PF00107:Zinc-binding dehydrogenase"]
[4,8637259,8637368,110,25,0.0142587476041854,0.11954859621694,-0.105289848612755,-150.269348898039,"CHH","Os04g0229100","utr3","CINNAMYL ALCOHOL DEHYDROGENASE 6","Similar to Sinapyl alcohol dehydrogenase && sp|Q7XWU3|CADH6_ORYSJ Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CAD6 PE=2 SV=2 && PF08240:Alcohol dehydrogenase GroES-like domain|PF00107:Zinc-binding dehydrogenase"]
[4,8637259,8637368,110,25,0.0142587476041854,0.11954859621694,-0.105289848612755,-150.269348898039,"CHH","Os04g0229100","exon","CINNAMYL ALCOHOL DEHYDROGENASE 6","Similar to Sinapyl alcohol dehydrogenase && sp|Q7XWU3|CADH6_ORYSJ Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CAD6 PE=2 SV=2 && PF08240:Alcohol dehydrogenase GroES-like domain|PF00107:Zinc-binding dehydrogenase"]
[4,8676463,8676600,138,36,8.94227680103068E-3,0.0923693176674367,-0.0834270408664061,-146.802748471725,"CHH","4:8675830:8677830","CGI_shore"]
[4,8695572,8695663,92,10,0.0535451282425579,0.512259741002582,-0.458714612760024,-64.2851000979621,"CHG","4:8693832:8695832","CGI_shore"]
[4,8768952,8769084,133,11,0.217000585637127,0.509081007396272,-0.292080421759145,-49.0147411923281,"CHG","Os04g0231266","promoter","Os04g0231266","Conserved hypothetical protein && - && -"]
[4,9849210,9849344,135,59,0.0224677773614702,0.0744277671816894,-0.0519599898202192,-248.13765276879,"CHH","4:9847687:9849687","CGI_shore"]
[4,10144051,10144231,181,85,0.203582036847428,0.326103604608112,-0.122521567760684,-396.908010521679,"CHH","4:10142179:10154673","CGI"]
[4,10635489,10635581,93,39,0.402432387574287,0.749270175837196,-0.346837788262909,-226.600263093057,"CG","4:10634701:10636702","CGI_shore"]
[4,10635489,10635581,93,39,0.402432387574287,0.749270175837196,-0.346837788262909,-226.600263093057,"CG","4:10635054:10635913","CGI"]
[4,11240425,11240493,69,22,0.00571991722945037,0.0560895042273157,-0.0503695869978654,-104.967958031226,"CHH","Os04g0269600","intron","DIAMINE OXIDASE 2","Similar to Primary amine oxidase && sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thaliana OX=3702 GN=At1g62810 PE=2 SV=1 && -"]
[4,11499621,11499679,59,15,0.0648883956412717,0.191917429804881,-0.127029034163609,-75.1377999055147,"CG","4:11493797:11499726","CGI"]
[4,11499621,11499679,59,15,0.0648883956412717,0.191917429804881,-0.127029034163609,-75.1377999055147,"CG","4:11498501:11500501","CGI_shore"]
[4,11499621,11499679,59,15,0.0648883956412717,0.191917429804881,-0.127029034163609,-75.1377999055147,"CG","Os04g0274100","exon","Os04g0274100","Conserved hypothetical protein && sp|Q94C57|U73B2_ARATH UDP-glucosyl transferase 73B2 OS=Arabidopsis thaliana OX=3702 GN=UGT73B2 PE=1 SV=1 && -"]
[4,11499621,11499679,59,15,0.0648883956412717,0.191917429804881,-0.127029034163609,-75.1377999055147,"CG","Os04g0274100","utr3","Os04g0274100","Conserved hypothetical protein && sp|Q94C57|U73B2_ARATH UDP-glucosyl transferase 73B2 OS=Arabidopsis thaliana OX=3702 GN=UGT73B2 PE=1 SV=1 && -"]
[4,11499621,11499679,59,15,0.0648883956412717,0.191917429804881,-0.127029034163609,-75.1377999055147,"CG","Os04g0274100","TES","Os04g0274100","Conserved hypothetical protein && sp|Q94C57|U73B2_ARATH UDP-glucosyl transferase 73B2 OS=Arabidopsis thaliana OX=3702 GN=UGT73B2 PE=1 SV=1 && -"]
[4,11638248,11638327,80,14,0.0611673966627336,0.345499194236203,-0.28433179757347,-67.9386148805843,"CG","4:11636267:11638267","CGI_shore"]
[4,11638248,11638327,80,14,0.0611673966627336,0.345499194236203,-0.28433179757347,-67.9386148805843,"CG","Os04g0275950","promoter","Os04g0275950","Conserved hypothetical protein && - && -"]
[4,11638248,11638327,80,14,0.0611673966627336,0.345499194236203,-0.28433179757347,-67.9386148805843,"CG","4:11638268:11639245","CGI"]
[4,12174515,12174694,180,58,0.12531575217898,0.445462281631114,-0.320146529452134,-530.827397904652,"CHH","4:12173419:12175420","CGI_shore"]
[4,12174515,12174694,180,58,0.12531575217898,0.445462281631114,-0.320146529452134,-530.827397904652,"CHH","4:12174487:12176488","CGI_shore"]
[4,12405633,12405761,129,28,0.0872673656596845,0.226044752487476,-0.138777386827792,-174.972771818161,"CHH","4:12403829:12405829","CGI_shore"]
[4,12405633,12405761,129,28,0.0872673656596845,0.226044752487476,-0.138777386827792,-174.972771818161,"CHH","4:12404894:12406895","CGI_shore"]
[4,12419885,12419954,70,24,0.025213515168209,0.0851231144620196,-0.0599095992938106,-112.429592772423,"CHH","4:12418324:12420325","CGI_shore"]
[4,13200424,13200559,136,49,0.0369630599767542,0.154214010820883,-0.117250950844129,-247.51116988124,"CHH","4:13198655:13200656","CGI_shore"]
[4,13200424,13200559,136,49,0.0369630599767542,0.154214010820883,-0.117250950844129,-247.51116988124,"CHH","4:13198884:13200884","CGI_shore"]
[4,13200424,13200559,136,49,0.0369630599767542,0.154214010820883,-0.117250950844129,-247.51116988124,"CHH","Os04g0298600","promoter","Os04g0298600","Uncharacterised protein family FPL domain containing protein && sp|Q8W4P9|TT9_ARATH Protein TRANSPARENT TESTA 9 OS=Arabidopsis thaliana OX=3702 GN=TT9 PE=2 SV=1 && PF09758:Uncharacterised conserved protein"]
[4,13705147,13705241,95,11,0.378500719655784,0.564967856067677,-0.186467136411893,-41.9456498364112,"CHG","4:13704502:13706502","CGI_shore"]
[4,13896289,13896477,189,47,0.0743563000238654,0.200245109151202,-0.125888809127337,-272.976677350627,"CG","4:13894152:13896504","CGI"]
[4,13896289,13896477,189,47,0.0743563000238654,0.200245109151202,-0.125888809127337,-272.976677350627,"CG","Os04g0307800","promoter","Os04g0307800","Myb-related protein P, C-terminal domain containing protein && - && -"]
[4,13896340,13896481,142,26,0.0409444094876249,0.148300756554384,-0.107356347066759,-133.8190257968,"CHG","4:13894152:13896504","CGI"]
[4,13896340,13896481,142,26,0.0409444094876249,0.148300756554384,-0.107356347066759,-133.8190257968,"CHG","Os04g0307800","promoter","Os04g0307800","Myb-related protein P, C-terminal domain containing protein && - && -"]
[4,14198393,14198589,197,12,0.261164644130721,0.746329972759257,-0.485165328628536,-61.1533106953399,"CHG","4:14197052:14199052","CGI_shore"]
[4,14198393,14198589,197,12,0.261164644130721,0.746329972759257,-0.485165328628536,-61.1533106953399,"CHG","4:14197056:14199057","CGI_shore"]
[4,14198393,14198589,197,12,0.261164644130721,0.746329972759257,-0.485165328628536,-61.1533106953399,"CHG","4:14197834:14198428","CGI"]
[4,14198393,14198589,197,12,0.261164644130721,0.746329972759257,-0.485165328628536,-61.1533106953399,"CHG","4:14198428:14200429","CGI_shore"]
[4,14367436,14367506,71,21,0.0205186873811118,0.205670833783998,-0.185152146402886,-95.3392610991862,"CHH","4:14365503:14367504","CGI_shore"]
[4,14786794,14786856,63,16,0.15818121306624,0.307390157992466,-0.149208944926227,-79.1855421388595,"CHH","Os04g0321100","promoter","Os04g0321100","Similar to H0107B07.6 protein && sp|Q9ZWJ3|U85A2_ARATH UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana OX=3702 GN=UGT85A2 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[4,14786794,14786856,63,16,0.15818121306624,0.307390157992466,-0.149208944926227,-79.1855421388595,"CHH","4:14785308:14787308","CGI_shore"]
[4,15442720,15442788,69,15,0.502177055641114,0.654401173083926,-0.152224117442812,-58.6871290108633,"CHG","4:15442324:15442965","CGI"]
[4,15516095,15516177,83,24,0.178536114370901,0.353119410551445,-0.174583296180543,-113.862445654544,"CG","4:15515982:15516267","CGI"]
[4,15516095,15516177,83,24,0.178536114370901,0.353119410551445,-0.174583296180543,-113.862445654544,"CG","4:15514439:15516440","CGI_shore"]
[4,15517515,15517583,69,11,0.0391808007785822,0.205519706843481,-0.166338906064899,-55.6916286904131,"CHG","4:15516267:15518268","CGI_shore"]
[4,15992696,15992820,125,17,0.443145806567014,0.699969351232428,-0.256823544665414,-83.7174212741491,"CHG","4:15991722:15993723","CGI_shore"]
[4,16078495,16078657,163,21,0.0072106331660607,0.267334335577357,-0.260123702411296,-118.978060263816,"CHH","4:16077793:16079345","CGI"]
[4,16545676,16545782,107,27,0.0200201553691398,0.129598704936106,-0.109578549566966,-158.090532527624,"CHH","4:16543818:16545819","CGI_shore"]
[4,16545676,16545782,107,27,0.0200201553691398,0.129598704936106,-0.109578549566966,-158.090532527624,"CHH","Os04g0347700","promoter","Os04g0347700","Similar to OSIGBa0130K07.4 protein && sp|O23277|PRD1_ARATH Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 OS=Arabidopsis thaliana OX=3702 GN=PRD1 PE=1 SV=3 && -"]
[4,16752370,16752486,117,30,0.497441798727188,0.811375377288252,-0.313933578561064,-161.156671687883,"CG","4:16752069:16755349","CGI"]
[4,16752370,16752486,117,30,0.497441798727188,0.811375377288252,-0.313933578561064,-161.156671687883,"CG","Os04g0351333","promoter","Os04g0351333","Similar to OSIGBa0144C23.4 protein && - && PF13041:PPR repeat family|PF01535:PPR repeat"]
[4,16752370,16752486,117,30,0.497441798727188,0.811375377288252,-0.313933578561064,-161.156671687883,"CG","Os04g0351100","utr3","Os04g0351100","Hypothetical protein && - && PF13041:PPR repeat family|PF01535:PPR repeat"]
[4,16752370,16752486,117,30,0.497441798727188,0.811375377288252,-0.313933578561064,-161.156671687883,"CG","Os04g0351100","exon","Os04g0351100","Hypothetical protein && - && PF13041:PPR repeat family|PF01535:PPR repeat"]
[4,16873369,16873428,60,16,0.027998741243268,0.0828474643641158,-0.0548487231208478,-70.966197707812,"CHH","4:16872667:16874668","CGI_shore"]
[4,16873369,16873428,60,16,0.027998741243268,0.0828474643641158,-0.0548487231208478,-70.966197707812,"CHH","Target=RETROFIT_I-int:3575-4395;Class=LTR/Copia","repeat"]
[4,16873369,16873428,60,16,0.027998741243268,0.0828474643641158,-0.0548487231208478,-70.966197707812,"CHH","4:16872991:16874991","CGI_shore"]
[4,17093338,17093405,68,14,0.0194052505569578,0.186615033890212,-0.167209783333254,-77.7827878868897,"CHH","4:17091449:17093449","CGI_shore"]
[4,17094404,17094491,88,22,0.0114140795194577,0.0659518963320697,-0.054537816812612,-112.723298510378,"CHH","4:17093450:17094725","CGI"]
[4,17536842,17536900,59,23,0.68245399124365,0.807750183295338,-0.125296192051688,-111.651990293195,"CG","4:17524486:17546571","CGI"]
[4,17543044,17543099,56,6,0.402541724724591,0.697483767282116,-0.294942042557525,-28.6829978934754,"CHG","4:17524486:17546571","CGI"]
[4,17809922,17814241,4320,60,0.0148366445106844,0.121522027677748,-0.106685383167064,-322.443726872397,"CHH","4:17809792:17810249","CGI"]
[4,17809922,17814241,4320,60,0.0148366445106844,0.121522027677748,-0.106685383167064,-322.443726872397,"CHH","4:17810249:17812250","CGI_shore"]
[4,17890572,17890624,53,5,0.0632490912117621,0.224087309198726,-0.160838217986964,-22.1057278985786,"CHG","Os04g0368300","intron","RECEPTOR-LIKE CYTOPLASMIC KINASE 142","Similar to H0607F01.5 protein && sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 && PF00069:Protein kinase domain|PF13947:Wall-associated receptor kinase galacturonan-binding"]
[4,17903822,17903921,100,15,0.416047949619484,0.621452749935425,-0.205404800315941,-66.7773428728068,"CHG","4:17903399:17905399","CGI_shore"]
[4,17903822,17903921,100,15,0.416047949619484,0.621452749935425,-0.205404800315941,-66.7773428728068,"CHG","4:17903705:17904632","CGI"]
[4,18119734,18119798,65,9,0.507086539294713,0.760175182144595,-0.253088642849882,-36.4819560071964,"CHG","4:18118024:18120024","CGI_shore"]
[4,18119734,18119798,65,9,0.507086539294713,0.760175182144595,-0.253088642849882,-36.4819560071964,"CHG","4:18119153:18121153","CGI_shore"]
[4,18483035,18483100,66,18,0.477646621004084,0.782794225767498,-0.305147604763414,-82.974428962612,"CG","4:18482027:18484028","CGI_shore"]
[4,18483035,18483100,66,18,0.477646621004084,0.782794225767498,-0.305147604763414,-82.974428962612,"CG","4:18482726:18483317","CGI"]
[4,18483035,18483100,66,18,0.477646621004084,0.782794225767498,-0.305147604763414,-82.974428962612,"CG","4:18483063:18485063","CGI_shore"]
[4,18484981,18485088,108,25,0.0114013515994665,0.324720651835323,-0.313319300235857,-173.221459976298,"CHH","4:18483063:18485063","CGI_shore"]
[4,18484981,18485088,108,25,0.0114013515994665,0.324720651835323,-0.313319300235857,-173.221459976298,"CHH","4:18483317:18485318","CGI_shore"]
[4,18484981,18485088,108,25,0.0114013515994665,0.324720651835323,-0.313319300235857,-173.221459976298,"CHH","4:18485064:18486069","CGI"]
[4,18496667,18496782,116,18,0.261923726608953,0.480212252054507,-0.218288525445553,-86.1427534517129,"CHG","4:18496196:18497132","CGI"]
[4,18496667,18496782,116,18,0.261923726608953,0.480212252054507,-0.218288525445553,-86.1427534517129,"CHG","ENSRNA049448453","promoter","tRNA-Ala","tRNA-Ala for anticodon AGC && - && -"]
[4,18788592,18788711,120,33,0.144223478520865,0.371240386836347,-0.227016908315482,-142.023932524902,"CHG","4:18786963:18788964","CGI_shore"]
[4,18788592,18788711,120,33,0.144223478520865,0.371240386836347,-0.227016908315482,-142.023932524902,"CHG","4:18788539:18788804","CGI"]
[4,18870410,18870513,104,29,0.121298703919958,0.200187163291491,-0.0788884593715325,-107.860318976643,"CHH","4:18825767:18882028","CGI"]
[4,18880760,18880936,177,42,0.242942831458244,0.494566668138382,-0.251623836680138,-274.129543701493,"CG","4:18825767:18882028","CGI"]
[4,18984394,18984534,141,41,0.0300709212518477,0.174640707173289,-0.144569785921441,-277.815542334558,"CHH","4:18982686:18984686","CGI_shore"]
[4,18984394,18984534,141,41,0.0300709212518477,0.174640707173289,-0.144569785921441,-277.815542334558,"CHH","Os04g0386500","promoter","Os04g0386500","Similar to OSIGBa0148P16.4 protein && - && PF04359:Protein of unknown function (DUF493)"]
[4,19202282,19202406,125,39,0.0108019411346431,0.0726083269710266,-0.0618063858363835,-184.889640902963,"CHH","4:19200889:19202889","CGI_shore"]
[4,19202282,19202406,125,39,0.0108019411346431,0.0726083269710266,-0.0618063858363835,-184.889640902963,"CHH","4:19201785:19203786","CGI_shore"]
[4,19658614,19658914,301,28,0.0765811340250069,0.215018151430676,-0.138437017405669,-108.238262451517,"CHH","4:19658450:19660451","CGI_shore"]
[4,19659535,19659757,223,21,0.245411352636284,0.50570563980226,-0.260294287165976,-97.991875173222,"CG","4:19658450:19660451","CGI_shore"]
[4,19683179,19683354,176,20,0.281991073037383,0.585168801412162,-0.303177728374779,-117.199238376789,"CG","Os04g0398500","promoter","Os04g0398500","Similar to Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor (EC 1.10.2.2) (Rieske iron-sulfur protein) (RISP) && sp|P49727|UCRI_MAIZE Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays OX=4577 PE=2 SV=1 && PF02921:Ubiquinol cytochrome reductase transmembrane region|PF00355:Rieske [2Fe-2S] domain"]
[4,19683179,19683354,176,20,0.281991073037383,0.585168801412162,-0.303177728374779,-117.199238376789,"CG","4:19683300:19685300","CGI_shore"]
[4,20023233,20023286,54,6,0.490255662895371,0.900453054133909,-0.410197391238537,-49.9525777948719,"CG","Os04g0403701","exon","protein phosphatase 2C39, protein phosphatase 2C 39, protein phosphatase 64","Similar to protein phosphatase 2C containing protein && sp|Q7XVF9|P2C39_ORYSJ Probable protein phosphatase 2C 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0403701 PE=2 SV=2 && PF00481:Protein phosphatase 2C"]
[4,20023233,20023286,54,6,0.490255662895371,0.900453054133909,-0.410197391238537,-49.9525777948719,"CG","4:20022836:20024836","CGI_shore"]
[4,20071076,20071169,94,10,0.648225832639429,0.879852422325643,-0.231626589686214,-38.7163687053873,"CG","4:20057379:20074939","CGI"]
[4,20297076,20297187,112,29,0.0281156906842388,0.107257633568944,-0.0791419428847055,-110.994609477153,"CHH","4:20296364:20298365","CGI_shore"]
[4,20328100,20328161,62,15,0.579108275667556,0.830469012067033,-0.251360736399477,-65.873114465488,"CG","4:20327418:20329090","CGI"]
[4,20944001,20944192,192,7,0.375155803550944,0.686725574599229,-0.311569771048285,-35.2511845871503,"CG","4:20942205:20944206","CGI_shore"]
[4,20944001,20944192,192,7,0.375155803550944,0.686725574599229,-0.311569771048285,-35.2511845871503,"CG","Os04g0423600","promoter","SET protein 18","SET domain containing protein && sp|Q3ECY6|SDG41_ARATH Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana OX=3702 GN=SDG41 PE=2 SV=1 && -"]
[4,20944001,20944192,192,7,0.375155803550944,0.686725574599229,-0.311569771048285,-35.2511845871503,"CG","Os04g0423600","exon","SET protein 18","SET domain containing protein && sp|Q3ECY6|SDG41_ARATH Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana OX=3702 GN=SDG41 PE=2 SV=1 && -"]
[4,20944001,20944192,192,7,0.375155803550944,0.686725574599229,-0.311569771048285,-35.2511845871503,"CG","Os04g0423600","utr3","SET protein 18","SET domain containing protein && sp|Q3ECY6|SDG41_ARATH Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana OX=3702 GN=SDG41 PE=2 SV=1 && -"]
[4,20944001,20944192,192,7,0.375155803550944,0.686725574599229,-0.311569771048285,-35.2511845871503,"CG","Os04g0423600","intron","SET protein 18","SET domain containing protein && sp|Q3ECY6|SDG41_ARATH Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana OX=3702 GN=SDG41 PE=2 SV=1 && -"]
[4,21242381,21242480,100,34,0.0295044984544636,0.126211808475628,-0.0967073100211648,-151.408470348795,"CHH","4:21242367:21244368","CGI_shore"]
[4,21319639,21319732,94,32,0.680966154726245,0.869871545496296,-0.18890539077005,-152.276846745839,"CG","Os04g0429900","promoter","Os04g0429900","Conserved hypothetical protein && - && -"]
[4,21319639,21319732,94,32,0.680966154726245,0.869871545496296,-0.18890539077005,-152.276846745839,"CG","Os04g0429850","promoter","Os04g0429850","Hypothetical protein && sp|Q84WV8|NPRT2_ARATH Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=NAPRT2 PE=2 SV=1 && -"]
[4,21319639,21319732,94,32,0.680966154726245,0.869871545496296,-0.18890539077005,-152.276846745839,"CG","4:21319638:21320321","CGI"]
[4,21319639,21319732,94,32,0.680966154726245,0.869871545496296,-0.18890539077005,-152.276846745839,"CG","Os04g0429900","TSS","Os04g0429900","Conserved hypothetical protein && - && -"]
[4,21319639,21319732,94,32,0.680966154726245,0.869871545496296,-0.18890539077005,-152.276846745839,"CG","Os04g0429900","utr5","Os04g0429900","Conserved hypothetical protein && - && -"]
[4,21319639,21319732,94,32,0.680966154726245,0.869871545496296,-0.18890539077005,-152.276846745839,"CG","Os04g0429900","exon","Os04g0429900","Conserved hypothetical protein && - && -"]
[4,21446306,21446446,141,32,0.0339386424778062,0.194336262430676,-0.16039761995287,-189.669744872085,"CHH","Os04g0432250","promoter","Os04g0432250","Conserved hypothetical protein && sp|Q9C6G0|DEXH4_ARATH DExH-box ATP-dependent RNA helicase DExH4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g58050 PE=3 SV=1 && -"]
[4,21446306,21446446,141,32,0.0339386424778062,0.194336262430676,-0.16039761995287,-189.669744872085,"CHH","Os04g0432300","promoter","Os04g0432300","Similar to 4-alpha-L-fucosyltransferase && sp|Q9C8W3|FUT13_ARATH Alpha-(1,4)-fucosyltransferase OS=Arabidopsis thaliana OX=3702 GN=FUT13 PE=2 SV=2 && PF00852:Glycosyltransferase family 10 (fucosyltransferase) C-term"]
[4,21785631,21785754,124,41,0.0454873083047095,0.206862764219784,-0.161375455915075,-159.585760036723,"CG","Os04g0438101","exon","Os04g0438101","Similar to H0315A08.9 protein && - && -"]
[4,21785631,21785754,124,41,0.0454873083047095,0.206862764219784,-0.161375455915075,-159.585760036723,"CG","4:21785599:21785886","CGI"]
[4,22246642,22246725,84,20,0.0697126584447365,0.179813808006289,-0.110101149561553,-95.702660901576,"CHH","Os04g0446300","TES","Os04g0446300","Microsomal signal peptidase 25 kDa subunit family protein && sp|P58684|SPCS2_ARATH Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At2g39960 PE=2 SV=1 && PF06703:Microsomal signal peptidase 25 kDa subunit (SPC25)"]
[4,22246642,22246725,84,20,0.0697126584447365,0.179813808006289,-0.110101149561553,-95.702660901576,"CHH","Os04g0446300","utr3","Os04g0446300","Microsomal signal peptidase 25 kDa subunit family protein && sp|P58684|SPCS2_ARATH Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At2g39960 PE=2 SV=1 && PF06703:Microsomal signal peptidase 25 kDa subunit (SPC25)"]
[4,22246642,22246725,84,20,0.0697126584447365,0.179813808006289,-0.110101149561553,-95.702660901576,"CHH","Os04g0446300","exon","Os04g0446300","Microsomal signal peptidase 25 kDa subunit family protein && sp|P58684|SPCS2_ARATH Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At2g39960 PE=2 SV=1 && PF06703:Microsomal signal peptidase 25 kDa subunit (SPC25)"]
[4,22409613,22409744,132,32,0.622640233862081,0.850800677013394,-0.228160443151312,-144.792776930095,"CG","4:22408113:22415111","CGI"]
[4,23034456,23034600,145,18,0.398152050038149,0.691037300132918,-0.292885250094769,-81.8267287879618,"CG","4:23034172:23036173","CGI_shore"]
[4,23044647,23044719,73,10,0.0928396156866119,0.280909169390415,-0.188069553703803,-35.9656223103101,"CHG","Os04g0461300","intron","MADS BOX GENE 61","Similar to MIKC-type MADS-box transcription factor WM30 && sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS27 PE=2 SV=2 && PF01486:K-box region"]
[4,23134434,23134657,224,21,0.451832434423779,0.748696326811066,-0.296863892387287,-142.736313113051,"CG","Os04g0463400","exon","vacuolar iron influxer VIT1;2, Vacuolar Iron Transporter 1","Vacuolar membrane transporter, Fe and Zn translocation between flag leaves and seed && sp|Q6MWE5|VIT1_ORYSJ Vacuolar iron transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=VIT1 PE=2 SV=1 && PF01988:VIT family"]
[4,23134434,23134657,224,21,0.451832434423779,0.748696326811066,-0.296863892387287,-142.736313113051,"CG","Os04g0463300","exon","Os04g0463300","Pentatricopeptide repeat containing protein && sp|Q6MWE5|VIT1_ORYSJ Vacuolar iron transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=VIT1 PE=2 SV=1 && -"]
[4,23134434,23134657,224,21,0.451832434423779,0.748696326811066,-0.296863892387287,-142.736313113051,"CG","Os04g0463300","utr3","Os04g0463300","Pentatricopeptide repeat containing protein && sp|Q6MWE5|VIT1_ORYSJ Vacuolar iron transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=VIT1 PE=2 SV=1 && -"]
[4,23134434,23134657,224,21,0.451832434423779,0.748696326811066,-0.296863892387287,-142.736313113051,"CG","4:23132596:23134597","CGI_shore"]
[4,23566239,23566290,52,20,0.0622488426788113,0.150278704627792,-0.0880298619489808,-93.1362939082262,"CHH","4:23564456:23566456","CGI_shore"]
[4,23933980,23934102,123,14,0.126047267454297,0.524532562537424,-0.398485295083127,-63.4036361355609,"CHG","4:23932326:23934326","CGI_shore"]
[4,23933980,23934102,123,14,0.126047267454297,0.524532562537424,-0.398485295083127,-63.4036361355609,"CHG","4:23933764:23935765","CGI_shore"]
[4,23941824,23941952,129,17,0.0662412784254656,0.319086432749345,-0.252845154323879,-82.2385727392338,"CG","4:23939860:23941860","CGI_shore"]
[4,23941824,23941952,129,17,0.0662412784254656,0.319086432749345,-0.252845154323879,-82.2385727392338,"CG","Os04g0478600","exon","Os04g0478600","Conserved hypothetical protein && - && -"]
[4,23941824,23941952,129,17,0.0662412784254656,0.319086432749345,-0.252845154323879,-82.2385727392338,"CG","Os04g0478600","utr5","Os04g0478600","Conserved hypothetical protein && - && -"]
[4,23941824,23941952,129,17,0.0662412784254656,0.319086432749345,-0.252845154323879,-82.2385727392338,"CG","4:23941861:23942152","CGI"]
[4,23981392,23981511,120,25,0.0202642367294731,0.264329472205309,-0.244065235475835,-185.427608978781,"CHH","4:23979057:23982464","CGI"]
[4,23981392,23981511,120,25,0.0202642367294731,0.264329472205309,-0.244065235475835,-185.427608978781,"CHH","Os04g0479500","promoter","F-box protein 219","Similar to OSIGBa0158F13.2 protein && - && -"]
[4,23981416,23981513,98,9,0.153789291668262,0.554682867505291,-0.400893575837029,-46.8463374549255,"CG","4:23979057:23982464","CGI"]
[4,24152402,24152463,62,7,0.663255969235029,0.79709828296151,-0.133842313726481,-26.0298235894282,"CHG","4:24151702:24153702","CGI_shore"]
[4,24152402,24152463,62,7,0.663255969235029,0.79709828296151,-0.133842313726481,-26.0298235894282,"CHG","4:24151850:24153851","CGI_shore"]
[4,24152402,24152463,62,7,0.663255969235029,0.79709828296151,-0.133842313726481,-26.0298235894282,"CHG","4:24152098:24152424","CGI"]
[4,24152402,24152463,62,7,0.663255969235029,0.79709828296151,-0.133842313726481,-26.0298235894282,"CHG","4:24152424:24154425","CGI_shore"]
[4,25377026,25377143,118,40,0.0578814564689602,0.142694229106753,-0.0848127726377932,-222.163498903044,"CHH","4:25375077:25377078","CGI_shore"]
[4,25588937,25588998,62,5,0.586227770997546,0.762922273367448,-0.176694502369902,-20.3897363549256,"CHG","4:25582652:25594979","CGI"]
[4,25601846,25601974,129,27,0.00775593144615218,0.151098128633495,-0.143342197187343,-172.392784367359,"CHH","Os04g0512200","intron","Os04g0512200","CER1 && sp|Q7XPZ4|GLO17_ORYSJ Very-long-chain aldehyde decarbonylase GL1-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GL1-7 PE=2 SV=3 && -"]
[4,25601846,25601974,129,27,0.00775593144615218,0.151098128633495,-0.143342197187343,-172.392784367359,"CHH","Os04g0512200","exon","Os04g0512200","CER1 && sp|Q7XPZ4|GLO17_ORYSJ Very-long-chain aldehyde decarbonylase GL1-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GL1-7 PE=2 SV=3 && -"]
[4,25601846,25601974,129,27,0.00775593144615218,0.151098128633495,-0.143342197187343,-172.392784367359,"CHH","Os04g0512200","utr3","Os04g0512200","CER1 && sp|Q7XPZ4|GLO17_ORYSJ Very-long-chain aldehyde decarbonylase GL1-7 OS=Oryza sativa subsp. japonica OX=39947 GN=GL1-7 PE=2 SV=3 && -"]
[4,25822375,25822480,106,42,0.0266649438279116,0.139462635724507,-0.112797691896595,-264.588260354524,"CHH","4:25821213:25823213","CGI_shore"]
[4,26264048,26264172,125,33,6.47622757766474E-3,0.0530708485181876,-0.0465946209405228,-162.970659205425,"CHH","Os04g0525200","utr3","Os04g0525200","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9LHJ2|U82A1_ARATH UDP-glycosyltransferase 82A1 OS=Arabidopsis thaliana OX=3702 GN=UGT82A1 PE=2 SV=1 && -"]
[4,26264048,26264172,125,33,6.47622757766474E-3,0.0530708485181876,-0.0465946209405228,-162.970659205425,"CHH","Os04g0525200","exon","Os04g0525200","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9LHJ2|U82A1_ARATH UDP-glycosyltransferase 82A1 OS=Arabidopsis thaliana OX=3702 GN=UGT82A1 PE=2 SV=1 && -"]
[4,26264048,26264172,125,33,6.47622757766474E-3,0.0530708485181876,-0.0465946209405228,-162.970659205425,"CHH","4:26262088:26264089","CGI_shore"]
[4,26264048,26264172,125,33,6.47622757766474E-3,0.0530708485181876,-0.0465946209405228,-162.970659205425,"CHH","Os04g0525100","promoter","Os04g0525100","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9LHJ2|U82A1_ARATH UDP-glycosyltransferase 82A1 OS=Arabidopsis thaliana OX=3702 GN=UGT82A1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[4,26722432,26722586,155,41,0.168485253848922,0.421264708437703,-0.252779454588781,-253.601196749624,"CG","4:26720004:26722659","CGI"]
[4,26722432,26722586,155,41,0.168485253848922,0.421264708437703,-0.252779454588781,-253.601196749624,"CG","Os04g0534801","exon","Os04g0534801","Conserved hypothetical protein && - && -"]
[4,26830322,26830396,75,10,0.0498505586987696,0.288086889912185,-0.238236331213416,-53.4891092416927,"CG","Os04g0537100","promoter","SMALL AUXIN-UP RNA 19","Similar to Auxin-induced protein X15 && sp|O22150|SAU36_ARATH Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1 && PF02519:Auxin responsive protein"]
[4,26830322,26830396,75,10,0.0498505586987696,0.288086889912185,-0.238236331213416,-53.4891092416927,"CG","4:26774360:26951821","CGI"]
[4,26923470,26923547,78,43,0.081295457286325,0.267818797917056,-0.186523340630731,-256.266263631035,"CHH","4:26774360:26951821","CGI"]
[4,27247358,27247626,269,66,0.603385555896737,0.83261742672583,-0.229231870829093,-317.197349463218,"CG","Os04g0544100","promoter","SET protein 20, SUVH Histone Methyltransferase 5","Similar to SET domain-containing protein SET104 && sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana OX=3702 GN=SUVH5 PE=1 SV=1 && PF00856:SET domain|PF05033:Pre-SET motif|PF02182:SAD/SRA domain"]
[4,27247358,27247626,269,66,0.603385555896737,0.83261742672583,-0.229231870829093,-317.197349463218,"CG","4:27246079:27247980","CGI"]
[4,27464439,27464625,187,29,0.129688875106523,0.442532453942803,-0.31284357883628,-160.082534146389,"CHH","4:27462888:27468103","CGI"]
[4,27737923,27738053,131,43,0.463340128759604,0.774909188164172,-0.311569059404568,-190.346364936893,"CG","4:27736486:27738342","CGI"]
[4,27737923,27738053,131,43,0.463340128759604,0.774909188164172,-0.311569059404568,-190.346364936893,"CG","Os04g0554300","promoter","Os04g0554300","Similar to OSIGBa0143N19.14 protein && - && -"]
[4,28000692,28000786,95,25,0.0287510439131983,0.0789259565528159,-0.0501749126396176,-96.6392709946548,"CHH","4:27918438:28005194","CGI"]
[4,28226492,28226628,137,45,0.0323686796724068,0.0939792306321376,-0.0616105509597308,-219.222112416911,"CHH","Os04g0563801","intron","Os04g0563801","Similar to H0409D10.4 protein && sp|O35604|NPC1_MOUSE NPC intracellular cholesterol transporter 1 OS=Mus musculus OX=10090 GN=Npc1 PE=1 SV=2 && PF02460:Patched family"]
[4,28839128,28839305,178,19,0.0336502970920657,0.159870976059105,-0.126220678967039,-97.5470981497994,"CHG","Os04g0572600","promoter","Os04g0572600","Similar to DNA-directed RNA polymerase && sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1 && PF11523:Protein of unknown function (DUF3223)"]
[4,28878025,28878216,192,56,0.048168824065997,0.162484157257363,-0.114315333191366,-363.121995791013,"CHH","Os04g0573300","intron","Subtilisin 45, SUBTILISIN 45","Similar to OSIGBa0147H17.8 protein && sp|Q9FLI4|SBT13_ARATH Subtilisin-like protease SBT1.3 OS=Arabidopsis thaliana OX=3702 GN=SBT1.3 PE=2 SV=1 && PF05922:Peptidase inhibitor I9|PF02225:PA domain|PF00082:Subtilase family"]
[4,28878025,28878216,192,56,0.048168824065997,0.162484157257363,-0.114315333191366,-363.121995791013,"CHH","Os04g0573200","promoter","superoxide dismutase","Superoxide dismutase, copper/zinc binding domain containing protein && sp|Q9FLI4|SBT13_ARATH Subtilisin-like protease SBT1.3 OS=Arabidopsis thaliana OX=3702 GN=SBT1.3 PE=2 SV=1 && -"]
[4,28878025,28878216,192,56,0.048168824065997,0.162484157257363,-0.114315333191366,-363.121995791013,"CHH","Os04g0573200","intron","superoxide dismutase","Superoxide dismutase, copper/zinc binding domain containing protein && sp|Q9FLI4|SBT13_ARATH Subtilisin-like protease SBT1.3 OS=Arabidopsis thaliana OX=3702 GN=SBT1.3 PE=2 SV=1 && -"]
[4,29066790,29066863,74,25,0.0183542125233984,0.226676359638952,-0.208322147115554,-150.69548975688,"CHH","4:29066352:29068353","CGI_shore"]
[4,29066790,29066863,74,25,0.0183542125233984,0.226676359638952,-0.208322147115554,-150.69548975688,"CHH","Os04g0576700","exon","Os04g0576700","RNA polymerase II, heptapeptide repeat, eukaryotic domain containing protein && - && PF12274:Protein of unknown function (DUF3615)"]
[4,29208314,29208414,101,25,0.538315625959199,0.861042158662932,-0.322726532703733,-115.395897136834,"CG","4:29208121:29208579","CGI"]
[4,29483462,29483533,72,21,0.00289921621658444,0.0361895908797715,-0.0332903746631871,-109.359091570351,"CHH","Os04g0583500","promoter","ALPHA-EXPANSIN 10","Expansin, Al-inducible expansin, Root cell elongatio && sp|Q7XUD0|EXP10_ORYSJ Expansin-A10 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA10 PE=2 SV=2 && PF03330:Lytic transglycolase"]
[4,29483462,29483533,72,21,0.00289921621658444,0.0361895908797715,-0.0332903746631871,-109.359091570351,"CHH","4:29483166:29485167","CGI_shore"]
[4,29483462,29483533,72,21,0.00289921621658444,0.0361895908797715,-0.0332903746631871,-109.359091570351,"CHH","4:29483281:29485281","CGI_shore"]
[4,29532845,29532903,59,7,0.2172382598403,0.534966671221787,-0.317728411381487,-36.5430260792307,"CG","4:29532243:29534244","CGI_shore"]
[4,29532845,29532903,59,7,0.2172382598403,0.534966671221787,-0.317728411381487,-36.5430260792307,"CG","Os04g0584600","intron","CALCIUM-DEPENDENT PROTEIN KINASE 13","Similar to Calcium dependent protein kinase && sp|Q9FXQ3|CDPKD_ORYSJ Calcium-dependent protein kinase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK13 PE=2 SV=1 && PF00069:Protein kinase domain|PF13499:EF-hand domain pair"]
[4,29532845,29532903,59,7,0.2172382598403,0.534966671221787,-0.317728411381487,-36.5430260792307,"CG","Os04g0584600","exon","CALCIUM-DEPENDENT PROTEIN KINASE 13","Similar to Calcium dependent protein kinase && sp|Q9FXQ3|CDPKD_ORYSJ Calcium-dependent protein kinase 13 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK13 PE=2 SV=1 && PF00069:Protein kinase domain|PF13499:EF-hand domain pair"]
[4,29787236,29787315,80,17,0.250227900077736,0.467739239198214,-0.217511339120477,-72.563578719563,"CG","4:29786446:29788130","CGI"]
[4,29787236,29787315,80,17,0.250227900077736,0.467739239198214,-0.217511339120477,-72.563578719563,"CG","Os04g0589200","promoter","Os04g0589200","Heat shock protein DnaJ, cysteine-rich region domain containing protein && - && -"]
[4,30441064,30441123,60,12,0.129725132087417,0.317887389646689,-0.188162257559272,-57.272735098315,"CG","4:30439253:30441254","CGI_shore"]
[4,30441064,30441123,60,12,0.129725132087417,0.317887389646689,-0.188162257559272,-57.272735098315,"CG","Os04g0603100","exon","Os04g0603100","Hypothetical protein && sp|Q9FMM4|RHG1A_ARATH Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 && -"]
[4,30441064,30441123,60,12,0.129725132087417,0.317887389646689,-0.188162257559272,-57.272735098315,"CG","Os04g0603100","utr3","Os04g0603100","Hypothetical protein && sp|Q9FMM4|RHG1A_ARATH Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 && -"]
[4,30441064,30441123,60,12,0.129725132087417,0.317887389646689,-0.188162257559272,-57.272735098315,"CG","Os04g0603200","exon","RING finger protein with microtubule-targeting domain 1","Similar to C-terminal zinc-finger (Fragment) && sp|O49500|MBR2_ARATH E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 && -"]
[4,30441064,30441123,60,12,0.129725132087417,0.317887389646689,-0.188162257559272,-57.272735098315,"CG","Os04g0603300","promoter","Os04g0603300","Hypothetical protein && - && -"]
[4,30441064,30441123,60,12,0.129725132087417,0.317887389646689,-0.188162257559272,-57.272735098315,"CG","Os04g0603200","promoter","RING finger protein with microtubule-targeting domain 1","Similar to C-terminal zinc-finger (Fragment) && sp|O49500|MBR2_ARATH E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 && -"]
[4,30441064,30441123,60,12,0.129725132087417,0.317887389646689,-0.188162257559272,-57.272735098315,"CG","4:30440856:30442856","CGI_shore"]
[4,30626560,30626648,89,19,4.96451993268572E-3,0.0685171496074466,-0.0635526296747609,-103.887857780472,"CHH","4:30625940:30627940","CGI_shore"]
[4,30626560,30626648,89,19,4.96451993268572E-3,0.0685171496074466,-0.0635526296747609,-103.887857780472,"CHH","Os04g0606400","promoter","Os04g0606400","Similar to Mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC 3.2.1.113) && sp|Q9C512|MNS1_ARATH Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana OX=3702 GN=MNS1 PE=1 SV=1 && PF01532:Glycosyl hydrolase family 47"]
[4,30626560,30626648,89,19,4.96451993268572E-3,0.0685171496074466,-0.0635526296747609,-103.887857780472,"CHH","Os04g0606400","intron","Os04g0606400","Similar to Mannosyl-oligosaccharide 1,2-alpha-mannosidase (EC 3.2.1.113) && sp|Q9C512|MNS1_ARATH Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana OX=3702 GN=MNS1 PE=1 SV=1 && PF01532:Glycosyl hydrolase family 47"]
[4,30755077,30755161,85,20,0.1032132493089,0.223978953469802,-0.120765704160902,-96.4771044072018,"CHH","4:30753338:30755339","CGI_shore"]
[4,30815630,30815696,67,6,0.38708471186094,0.542269162460607,-0.155184450599666,-23.729318152245,"CHG","4:30815066:30817066","CGI_shore"]
[4,30815630,30815696,67,6,0.38708471186094,0.542269162460607,-0.155184450599666,-23.729318152245,"CHG","4:30815589:30817590","CGI_shore"]
[4,31053994,31054136,143,41,0.634803569022369,0.807074632779903,-0.172271063757534,-170.053959146595,"CG","4:31053626:31054321","CGI"]
[4,31381788,31381840,53,12,0.00390490811328413,0.0539641286537711,-0.050059220540487,-70.8228908256681,"CHH","Os04g0617700","promoter","Os04g0617700","Similar to H0313F03.6 protein && - && -"]
[4,31381788,31381840,53,12,0.00390490811328413,0.0539641286537711,-0.050059220540487,-70.8228908256681,"CHH","4:31380897:31382898","CGI_shore"]
[4,31429005,31429065,61,18,0.033440731369423,0.151909656156273,-0.11846892478685,-113.4048612377,"CHH","4:31421221:31436119","CGI"]
[4,31466799,31466896,98,22,0.0131913509552455,0.0906468307900784,-0.0774554798348329,-111.322097365001,"CHH","4:31465920:31467920","CGI_shore"]
[4,31466799,31466896,98,22,0.0131913509552455,0.0906468307900784,-0.0774554798348329,-111.322097365001,"CHH","Os04g0619400","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 160","Protein kinase, core domain containing protein && sp|Q93YN1|CRPK1_ARATH Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[4,31652119,31652347,229,88,0.144391397136923,0.375055679884476,-0.230664282747553,-554.766699172735,"CG","4:31648697:31656961","CGI"]
[4,31652149,31652288,140,27,0.0391393913047705,0.242224883778668,-0.203085492473898,-153.02377334265,"CHG","4:31648697:31656961","CGI"]
[4,31850976,31851089,114,38,0.0667918909614309,0.193532364995115,-0.126740474033685,-234.786162084617,"CHH","Os04g0626300","utr5","Os04g0626300","Hypothetical protein && sp|Q9STS7|CHL_ARATH Chloroplastic lipocalin OS=Arabidopsis thaliana OX=3702 GN=CHL PE=1 SV=1 && -"]
[4,31850976,31851089,114,38,0.0667918909614309,0.193532364995115,-0.126740474033685,-234.786162084617,"CHH","Os04g0626300","exon","Os04g0626300","Hypothetical protein && sp|Q9STS7|CHL_ARATH Chloroplastic lipocalin OS=Arabidopsis thaliana OX=3702 GN=CHL PE=1 SV=1 && -"]
[4,31850976,31851089,114,38,0.0667918909614309,0.193532364995115,-0.126740474033685,-234.786162084617,"CHH","4:31850742:31851987","CGI"]
[4,31850976,31851089,114,38,0.0667918909614309,0.193532364995115,-0.126740474033685,-234.786162084617,"CHH","Os04g0626400","promoter","Os04g0626400","Similar to OSIGBa0148A10.12 protein && sp|Q9STS7|CHL_ARATH Chloroplastic lipocalin OS=Arabidopsis thaliana OX=3702 GN=CHL PE=1 SV=1 && PF08212:Lipocalin-like domain"]
[4,32861972,32862093,122,17,0.27876032353287,0.560069135911154,-0.281308812378285,-81.7094812218048,"CG","Os04g0645600","promoter","Os04g0645600","Protein of unknown function DUF6, transmembrane domain containing protein && sp|Q03730|YMB8_YEAST Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=YML018C PE=1 SV=1 && PF00892:EamA-like transporter family"]
[4,32861972,32862093,122,17,0.27876032353287,0.560069135911154,-0.281308812378285,-81.7094812218048,"CG","4:32860628:32862629","CGI_shore"]
[4,32861972,32862093,122,17,0.27876032353287,0.560069135911154,-0.281308812378285,-81.7094812218048,"CG","4:32861488:32863488","CGI_shore"]
[4,32861972,32862093,122,17,0.27876032353287,0.560069135911154,-0.281308812378285,-81.7094812218048,"CG","Os04g0645700","utr3","Os04g0645700","Similar to H0811D08.5 protein && - && -"]
[4,32861972,32862093,122,17,0.27876032353287,0.560069135911154,-0.281308812378285,-81.7094812218048,"CG","Os04g0645700","exon","Os04g0645700","Similar to H0811D08.5 protein && - && -"]
[4,33840159,33840320,162,62,0.0472132970122893,0.158850658539539,-0.11163736152725,-231.085499520259,"CG","4:33837489:33840480","CGI"]
[4,33840159,33840320,162,62,0.0472132970122893,0.158850658539539,-0.11163736152725,-231.085499520259,"CG","Os04g0663100","utr5","Os04g0663100","Similar to OSIGBa0099L20.2 protein && sp|A0A1P8B0B7|IQD29_ARATH Protein IQ-DOMAIN 29 OS=Arabidopsis thaliana OX=3702 GN=IQD29 PE=1 SV=1 && -"]
[4,33840159,33840320,162,62,0.0472132970122893,0.158850658539539,-0.11163736152725,-231.085499520259,"CG","Os04g0663100","exon","Os04g0663100","Similar to OSIGBa0099L20.2 protein && sp|A0A1P8B0B7|IQD29_ARATH Protein IQ-DOMAIN 29 OS=Arabidopsis thaliana OX=3702 GN=IQD29 PE=1 SV=1 && -"]
[4,33840159,33840320,162,62,0.0472132970122893,0.158850658539539,-0.11163736152725,-231.085499520259,"CG","Os04g0663100","intron","Os04g0663100","Similar to OSIGBa0099L20.2 protein && sp|A0A1P8B0B7|IQD29_ARATH Protein IQ-DOMAIN 29 OS=Arabidopsis thaliana OX=3702 GN=IQD29 PE=1 SV=1 && -"]
[4,34082484,34082554,71,7,0.288002893358044,0.718504680311944,-0.430501786953901,-40.8126560061061,"CG","Os04g0667700","promoter","F-box protein 236","Similar to Actin-related protein 8A && sp|A8WAT2|ARP8_ORYSI Actin-related protein 8 OS=Oryza sativa subsp. indica OX=39946 GN=ARP8 PE=3 SV=1 && -"]
[4,34082698,34082795,98,13,0.744457251349389,0.883784297140203,-0.139327045790814,-50.6047385553226,"CG","Os04g0667700","promoter","F-box protein 236","Similar to Actin-related protein 8A && sp|A8WAT2|ARP8_ORYSI Actin-related protein 8 OS=Oryza sativa subsp. indica OX=39946 GN=ARP8 PE=3 SV=1 && -"]
[4,34296762,34296820,59,17,0.0517587740161116,0.30844866713306,-0.256689893116949,-103.368397252685,"CHH","4:34295480:34297481","CGI_shore"]
[4,34296762,34296820,59,17,0.0517587740161116,0.30844866713306,-0.256689893116949,-103.368397252685,"CHH","4:34295845:34297845","CGI_shore"]
[4,34551360,34551548,189,59,0.0336847703144825,0.133578143346221,-0.099893373031739,-335.023083456682,"CHH","Os04g0676650","intron","LATE-FLOWERING 2","Putative B3 domain-containing protein Os04g0676650 && sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0676650 PE=3 SV=2 && PF02362:B3 DNA binding domain"]
[4,34551360,34551548,189,59,0.0336847703144825,0.133578143346221,-0.099893373031739,-335.023083456682,"CHH","4:34550711:34552711","CGI_shore"]
[4,34551360,34551548,189,59,0.0336847703144825,0.133578143346221,-0.099893373031739,-335.023083456682,"CHH","4:34551345:34553346","CGI_shore"]
[4,34598497,34598605,109,48,0.0431596200642048,0.133086494740063,-0.0899268746758581,-254.728088765326,"CG","4:34595267:34598828","CGI"]
[4,34598497,34598605,109,48,0.0431596200642048,0.133086494740063,-0.0899268746758581,-254.728088765326,"CG","Os04g0677300","exon","Os04g0677300","Harpin-induced 1 domain containing protein && sp|Q8LD98|NHL6_ARATH NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1 && PF03168:Late embryogenesis abundant protein"]
[4,35244617,35244686,70,14,0.0275385744290398,0.159715798133293,-0.132177223704253,-69.8710993557469,"CHH","4:35147217:35270441","CGI"]
[4,35279653,35279806,154,33,0.19951023993889,0.386130187323806,-0.186619947384916,-152.827907918117,"CG","4:35278633:35280633","CGI_shore"]
[4,35279653,35279806,154,33,0.19951023993889,0.386130187323806,-0.186619947384916,-152.827907918117,"CG","Os04g0689700","promoter","Os04g0689700","RNA recognition motif, RNP-1 domain containing protein && - && -"]
[4,35279653,35279806,154,33,0.19951023993889,0.386130187323806,-0.186619947384916,-152.827907918117,"CG","4:35278802:35280803","CGI_shore"]
[4,35334008,35334082,75,22,0.283707545809243,0.561093813823447,-0.277386268014204,-147.208323535516,"CHH","4:35333028:35335029","CGI_shore"]
[4,35334008,35334082,75,22,0.283707545809243,0.561093813823447,-0.277386268014204,-147.208323535516,"CHH","Os04g0690600","promoter","AUXIN RESPONSE FACTOR 13","Similar to Auxin response factor 13 && sp|Q7XSS9|ARFM_ORYSJ Auxin response factor 13 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF13 PE=2 SV=2 && PF06507:Auxin response factor|PF02362:B3 DNA binding domain"]
[4,35416146,35416219,74,22,0.13082768231835,0.243748575748408,-0.112920893430058,-117.161399009618,"CHH","4:35414326:35416327","CGI_shore"]
[4,35416146,35416219,74,22,0.13082768231835,0.243748575748408,-0.112920893430058,-117.161399009618,"CHH","Os04g0691900","intron","Os04g0691900","Chaperonin Cpn60/TCP-1 family protein && sp|Q9XID0|FAB1D_ARATH Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D OS=Arabidopsis thaliana OX=3702 GN=FAB1D PE=3 SV=1 && PF00118:TCP-1/cpn60 chaperonin family|PF01504:Phosphatidylinositol-4-phosphate 5-Kinase"]
[4,35500951,35501027,77,20,0.237816041707184,0.415590329394454,-0.17777428768727,-109.017755585099,"CG","4:35499426:35501174","CGI"]
[4,35500951,35501027,77,20,0.237816041707184,0.415590329394454,-0.17777428768727,-109.017755585099,"CG","Os04g0693400","exon","Os04g0693400","Hypothetical protein && sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCG5 PE=2 SV=1 && PF01061:ABC-2 type transporter"]
[4,35500951,35501027,77,20,0.237816041707184,0.415590329394454,-0.17777428768727,-109.017755585099,"CG","4:35499680:35501680","CGI_shore"]
[4,35500951,35501027,77,20,0.237816041707184,0.415590329394454,-0.17777428768727,-109.017755585099,"CG","Os04g0693300","promoter","Os04g0693300","Hypothetical conserved gene && sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCG5 PE=2 SV=1 && -"]
[4,35500951,35501027,77,20,0.237816041707184,0.415590329394454,-0.17777428768727,-109.017755585099,"CG","Os04g0693400","utr3","Os04g0693400","Hypothetical protein && sp|Q9SIT6|AB5G_ARATH ABC transporter G family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCG5 PE=2 SV=1 && PF01061:ABC-2 type transporter"]
[5,32794,32894,101,23,0.535274492842061,0.80828580275484,-0.273011309912779,-119.940799308397,"CG","5:10689:33463","CGI"]
[5,32794,32894,101,23,0.535274492842061,0.80828580275484,-0.273011309912779,-119.940799308397,"CG","Os05g0100100","promoter","Os05g0100100","Similar to cDNA clone:006-204-G09, full insert sequence && - && -"]
[5,32808,32916,109,13,0.405244969927063,0.712519425504871,-0.307274455577808,-65.6849658462126,"CHG","5:10689:33463","CGI"]
[5,32808,32916,109,13,0.405244969927063,0.712519425504871,-0.307274455577808,-65.6849658462126,"CHG","Os05g0100100","promoter","Os05g0100100","Similar to cDNA clone:006-204-G09, full insert sequence && - && -"]
[5,59809,59909,101,28,0.06926702789839,0.224452641114535,-0.155185613216145,-148.304065509374,"CHH","Os05g0100600","promoter","Os05g0100600","Similar to aminophospholipid ATPase && sp|Q9SX33|ALA9_ARATH Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana OX=3702 GN=ALA9 PE=3 SV=1 && PF00122:E1-E2 ATPase|PF16209:Phospholipid-translocating ATPase N-terminal"]
[5,59809,59909,101,28,0.06926702789839,0.224452641114535,-0.155185613216145,-148.304065509374,"CHH","5:58779:60779","CGI_shore"]
[5,493760,493872,113,27,0.0603009054540996,0.202033144063663,-0.141732238609564,-138.749963995641,"CG","Os05g0108950","exon","Os05g0108950","Hypothetical gene && sp|P49100|CYB5_ORYSJ Cytochrome b5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0108800 PE=2 SV=2 && PF00173:Cytochrome b5-like Heme/Steroid binding domain"]
[5,493760,493872,113,27,0.0603009054540996,0.202033144063663,-0.141732238609564,-138.749963995641,"CG","Os05g0108800","exon","Os05g0108800","Cytochrome b5 && sp|P49100|CYB5_ORYSJ Cytochrome b5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0108800 PE=2 SV=2 && PF00173:Cytochrome b5-like Heme/Steroid binding domain"]
[5,672089,672220,132,25,0.231786078346545,0.519060879394992,-0.287274801048447,-149.278832673939,"CG","5:671220:680104","CGI"]
[5,717499,717594,96,9,0.298535386912661,0.546799619615669,-0.248264232703008,-45.4507772409742,"CG","Os05g0113400","utr5","actin depolymerizing factor 7","Similar to Actin-depolymerizing factor 2 (ADF 2) && sp|Q0DLA3|ADF7_ORYSJ Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 PE=3 SV=2 && PF00241:Cofilin/tropomyosin-type actin-binding protein"]
[5,717499,717594,96,9,0.298535386912661,0.546799619615669,-0.248264232703008,-45.4507772409742,"CG","Os05g0113400","exon","actin depolymerizing factor 7","Similar to Actin-depolymerizing factor 2 (ADF 2) && sp|Q0DLA3|ADF7_ORYSJ Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF7 PE=3 SV=2 && PF00241:Cofilin/tropomyosin-type actin-binding protein"]
[5,717499,717594,96,9,0.298535386912661,0.546799619615669,-0.248264232703008,-45.4507772409742,"CG","5:716394:718395","CGI_shore"]
[5,812233,812313,81,12,0.53015634755642,0.853152265858668,-0.322995918302247,-60.7013257288175,"CG","5:811439:812520","CGI"]
[5,812233,812313,81,12,0.53015634755642,0.853152265858668,-0.322995918302247,-60.7013257288175,"CG","Os05g0114800","intron","Os05g0114800","Hypothetical gene && - && -"]
[5,1010053,1010138,86,20,0.029424861937279,0.14196800293046,-0.112543140993181,-99.3610706620162,"CHH","5:1008596:1010596","CGI_shore"]
[5,1010053,1010138,86,20,0.029424861937279,0.14196800293046,-0.112543140993181,-99.3610706620162,"CHH","Os05g0119600","promoter","Os05g0119600","Similar to Protein binding protein && - && PF09724:Sister chromatid cohesion protein Dcc1"]
[5,1010053,1010138,86,20,0.029424861937279,0.14196800293046,-0.112543140993181,-99.3610706620162,"CHH","Os05g0119400","promoter","Os05g0119400","KIP1-like domain containing protein && sp|P0DMS1|NET2A_ARATH Protein NETWORKED 2A OS=Arabidopsis thaliana OX=3702 GN=NET2A PE=2 SV=1 && PF07765:KIP1-like protein"]
[5,1075773,1075834,62,8,0.194018296402195,0.625449890560168,-0.431431594157973,-48.6004537469776,"CHG","5:1075746:1075982","CGI"]
[5,1511250,1511362,113,27,0.463349818450629,0.837159237955381,-0.373809419504752,-130.696868607804,"CG","Os05g0126600","promoter","Os05g0126600","Hypothetical protein && - && -"]
[5,1511250,1511362,113,27,0.463349818450629,0.837159237955381,-0.373809419504752,-130.696868607804,"CG","5:1511277:1513277","CGI_shore"]
[5,1511250,1511362,113,27,0.463349818450629,0.837159237955381,-0.373809419504752,-130.696868607804,"CG","5:1507072:1511363","CGI"]
[5,1526563,1526707,145,42,0.406845507183105,0.550413994287321,-0.143568487104216,-210.941069089258,"CG","5:1521971:1530105","CGI"]
[5,1731340,1731399,60,19,0.147048711407426,0.271030995558799,-0.123982284151373,-91.8668838947474,"CHH","5:1730313:1732314","CGI_shore"]
[5,1731340,1731399,60,19,0.147048711407426,0.271030995558799,-0.123982284151373,-91.8668838947474,"CHH","Os05g0129700","promoter","KNOX PROTEIN 2","KNOX class homeodomain protein (Knotted1-type homeobox protein OSH71) && sp|A2Y007|KNOSA_ORYSI Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. indica OX=39946 GN=OSH71 PE=2 SV=2 && PF05920:Homeobox KN domain|PF03789:ELK domain|PF03791:KNOX2 domain|PF03790:KNOX1 domain"]
[5,1839704,1839765,62,18,0.0154279881995536,0.109225066401264,-0.09379707820171,-94.7877479192073,"CHH","5:1808487:1851858","CGI"]
[5,1992904,1992967,64,8,0.242271318927558,0.753597051237404,-0.511325732309846,-58.8851506965116,"CG","5:1992093:1994093","CGI_shore"]
[5,1992904,1992967,64,8,0.242271318927558,0.753597051237404,-0.511325732309846,-58.8851506965116,"CG","Os05g0134200","promoter","protein phosphatase 2C47, protein phosphatase 2C 47, protein phosphatase 72","Similar to Protein phosphatase-2C && sp|Q6AUQ4|P2C47_ORYSJ Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0134200 PE=2 SV=1 && PF00481:Protein phosphatase 2C"]
[5,2016560,2016657,98,45,0.0701384591652004,0.16929566596359,-0.0991572067983895,-221.625193631302,"CHH","5:2015788:2017788","CGI_shore"]
[5,2016560,2016657,98,45,0.0701384591652004,0.16929566596359,-0.0991572067983895,-221.625193631302,"CHH","5:2016537:2018538","CGI_shore"]
[5,2049075,2049176,102,10,0.0162496688219419,0.223690232479853,-0.207440563657911,-55.2489001408906,"CG","Os05g0135000","promoter","class III peroxidase 68","Haem peroxidase family protein && sp|Q9FEQ8|PER2_MAIZE Peroxidase 2 OS=Zea mays OX=4577 GN=PER2 PE=2 SV=1 && PF00141:Peroxidase"]
[5,2049075,2049176,102,10,0.0162496688219419,0.223690232479853,-0.207440563657911,-55.2489001408906,"CG","5:2048626:2050626","CGI_shore"]
[5,2049075,2049176,102,10,0.0162496688219419,0.223690232479853,-0.207440563657911,-55.2489001408906,"CG","5:2048749:2050750","CGI_shore"]
[5,2131979,2132281,303,77,0.117299533932396,0.340297331163783,-0.222997797231387,-638.568049226013,"CG","5:2131608:2132996","CGI"]
[5,2131980,2132071,92,13,0.129335468016029,0.482762426974681,-0.353426958958652,-89.4326741056153,"CHG","5:2131608:2132996","CGI"]
[5,2131984,2132205,222,60,0.0225738519671506,0.148573041761133,-0.125999189793982,-386.830802595347,"CHH","5:2131608:2132996","CGI"]
[5,2132633,2132714,82,17,0.110440543138702,0.260403336335938,-0.149962793197236,-77.7483783562659,"CHG","5:2131608:2132996","CGI"]
[5,2132656,2132924,269,56,0.144637926323401,0.314914278688699,-0.170276352365299,-272.075607470819,"CG","5:2131608:2132996","CGI"]
[5,2133044,2133182,139,49,0.0113180399965109,0.1290296647075,-0.117711624710989,-281.598563970136,"CHH","5:2132996:2134997","CGI_shore"]
[5,2224080,2224174,95,17,0.248222842161606,0.42098923333336,-0.172766391171754,-90.2173848264251,"CHH","5:2222430:2224430","CGI_shore"]
[5,2224080,2224174,95,17,0.248222842161606,0.42098923333336,-0.172766391171754,-90.2173848264251,"CHH","5:2222652:2224653","CGI_shore"]
[5,2314492,2314653,162,13,0.515331351537786,0.756405183680485,-0.241073832142699,-67.7534941823807,"CG","Os05g0140000","intron","Os05g0140000","Hypothetical protein && - && -"]
[5,2314492,2314653,162,13,0.515331351537786,0.756405183680485,-0.241073832142699,-67.7534941823807,"CG","Os05g0140100","exon","MYB2 phosphate-responsive gene 1, MYB transcription factor","R2R3 MYB transcription factor, Regulation of phosphate-starvation responses and root architectur && sp|Q8VZQ2|MYB61_ARATH Transcription factor MYB61 OS=Arabidopsis thaliana OX=3702 GN=MYB61 PE=2 SV=1 && PF00249:Myb-like DNA-binding domain"]
[5,2761569,2761666,98,24,0.0407122753672611,0.124591124133815,-0.0838788487665538,-140.698995873174,"CHH","5:2759748:2761748","CGI_shore"]
[5,2761569,2761666,98,24,0.0407122753672611,0.124591124133815,-0.0838788487665538,-140.698995873174,"CHH","Os05g0148300","promoter","Os05g0148300","Ribosomal protein S27/S33, mitochondrial domain containing protein && - && PF08293:Mitochondrial ribosomal subunit S27"]
[5,3381425,3381507,83,24,0.0861660484927141,0.365633372514174,-0.27946732402146,-124.622568624103,"CHH","5:3380359:3382360","CGI_shore"]
[5,3381425,3381507,83,24,0.0861660484927141,0.365633372514174,-0.27946732402146,-124.622568624103,"CHH","5:3380507:3382507","CGI_shore"]
[5,3381425,3381507,83,24,0.0861660484927141,0.365633372514174,-0.27946732402146,-124.622568624103,"CHH","5:3381409:3383410","CGI_shore"]
[5,3505756,3505813,58,14,0.607527497737145,0.855372550784659,-0.247845053047514,-75.4766881995593,"CG","5:3505702:3507491","CGI"]
[5,3514889,3515040,152,55,0.0274633259416039,0.187570287552597,-0.160106961610993,-308.054005659135,"CHH","5:3514061:3515091","CGI"]
[5,3635280,3635394,115,11,0.257872300726437,0.591007689333214,-0.333135388606778,-52.0646939647088,"CHG","5:3634464:3636464","CGI_shore"]
[5,3635280,3635394,115,11,0.257872300726437,0.591007689333214,-0.333135388606778,-52.0646939647088,"CHG","5:3635239:3635527","CGI"]
[5,3683019,3683099,81,8,0.150642596386823,0.670823607780082,-0.520181011393259,-53.6715458333734,"CHG","Os05g0162800","promoter","Os05g0162800","SANT domain, DNA binding domain containing protein && sp|Q6R0H0|RVE3_ARATH Protein REVEILLE 3 OS=Arabidopsis thaliana OX=3702 GN=RVE3 PE=2 SV=1 && PF00249:Myb-like DNA-binding domain"]
[5,3683019,3683099,81,8,0.150642596386823,0.670823607780082,-0.520181011393259,-53.6715458333734,"CHG","5:3681559:3683560","CGI_shore"]
[5,4031786,4031912,127,25,0.137342271039122,0.484264409464252,-0.34692213842513,-172.925899479963,"CHG","5:4004283:4072277","CGI"]
[5,4031896,4031987,92,7,0.359764338216146,0.764835505619912,-0.405071167403766,-44.6576788194256,"CG","5:4004283:4072277","CGI"]
[5,4154509,4154591,83,22,0.0397149526430936,0.134529825166714,-0.0948148725236204,-103.47206453482,"CHH","5:4152617:4155689","CGI"]
[5,4154509,4154591,83,22,0.0397149526430936,0.134529825166714,-0.0948148725236204,-103.47206453482,"CHH","Os05g0169300","intron","TRYPTOPHAN AMINOTRANSFERASE 1","Tryptophan aminotransferase, Indole-3-acetic acid (IAA) biosynthesis, Grain developmen && sp|Q0DKE8|TAR1_ORYSJ Tryptophan aminotransferase-related protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TAR1 PE=2 SV=1 && PF04864:Allinase"]
[5,4176301,4176359,59,10,0.0297633867126802,0.180541143587276,-0.150777756874596,-51.8595748695782,"CHG","Os05g0169701","exon","Os05g0169701","Hypothetical protein && sp|C0LGV1|RGI2_ARATH LRR receptor-like serine/threonine-protein kinase RGI2 OS=Arabidopsis thaliana OX=3702 GN=RGI2 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[5,4176301,4176359,59,10,0.0297633867126802,0.180541143587276,-0.150777756874596,-51.8595748695782,"CHG","Os05g0169600","exon","Os05g0169600","Serine/threonine protein kinase domain containing protein && sp|C0LGV1|RGI2_ARATH LRR receptor-like serine/threonine-protein kinase RGI2 OS=Arabidopsis thaliana OX=3702 GN=RGI2 PE=1 SV=1 && PF00069:Protein kinase domain"]
[5,4176301,4176359,59,10,0.0297633867126802,0.180541143587276,-0.150777756874596,-51.8595748695782,"CHG","Os05g0169701","utr5","Os05g0169701","Hypothetical protein && sp|C0LGV1|RGI2_ARATH LRR receptor-like serine/threonine-protein kinase RGI2 OS=Arabidopsis thaliana OX=3702 GN=RGI2 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[5,4176301,4176359,59,10,0.0297633867126802,0.180541143587276,-0.150777756874596,-51.8595748695782,"CHG","5:4172917:4180609","CGI"]
[5,4176301,4176359,59,10,0.0297633867126802,0.180541143587276,-0.150777756874596,-51.8595748695782,"CHG","Os05g0169700","intron","Os05g0169700","Similar to Sugar transporter family protein, expressed && sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana OX=3702 GN=STP11 PE=1 SV=1 && -"]
[5,4245653,4245773,121,8,0.234460874360992,0.514901759452113,-0.28044088509112,-46.3351130170867,"CG","5:4244035:4246035","CGI_shore"]
[5,4245653,4245773,121,8,0.234460874360992,0.514901759452113,-0.28044088509112,-46.3351130170867,"CG","Os05g0170800","intron","SKIP interacting protein 10, SKIPa-interacting protein 10, SKIPa-interacting protein 10","ApaG domain containing protein && sp|Q2VZE7|APAG_MAGSA Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=apaG PE=3 SV=1 && PF04379:ApaG domain"]
[5,4306790,4307033,244,22,0.184846169546603,0.470860572976194,-0.286014403429591,-131.869457713209,"CG","Os05g0172000","utr3","F-box protein 249","Conserved hypothetical protein && - && -"]
[5,4306790,4307033,244,22,0.184846169546603,0.470860572976194,-0.286014403429591,-131.869457713209,"CG","5:4305569:4307570","CGI_shore"]
[5,4306790,4307033,244,22,0.184846169546603,0.470860572976194,-0.286014403429591,-131.869457713209,"CG","Os05g0172000","exon","F-box protein 249","Conserved hypothetical protein && - && -"]
[5,4422372,4422457,86,11,0.318028306419392,0.605494383426077,-0.287466077006685,-45.3904043806979,"CHG","5:4420556:4422556","CGI_shore"]
[5,4422372,4422457,86,11,0.318028306419392,0.605494383426077,-0.287466077006685,-45.3904043806979,"CHG","5:4421398:4423398","CGI_shore"]
[5,4422372,4422457,86,11,0.318028306419392,0.605494383426077,-0.287466077006685,-45.3904043806979,"CHG","5:4421718:4423719","CGI_shore"]
[5,4692017,4692091,75,14,0.614539177532553,0.865338400748643,-0.25079922321609,-83.6519148218111,"CG","5:4690783:4692784","CGI_shore"]
[5,5195483,5195651,169,36,0.00955823636236846,0.221375144161026,-0.211816907798657,-224.102377321809,"CHH","5:5194856:5196856","CGI_shore"]
[5,6015569,6015656,88,24,0.0146832609432304,0.138075188534764,-0.123391927591534,-135.9614278932,"CHH","5:6014015:6016015","CGI_shore"]
[5,6015569,6015656,88,24,0.0146832609432304,0.138075188534764,-0.123391927591534,-135.9614278932,"CHH","5:6015112:6017113","CGI_shore"]
[5,6406272,6406323,52,15,0.174141305364354,0.323396593539553,-0.149255288175199,-63.6463850978491,"CHG","Os05g0203000","exon","RAPID ALKALIZATION FACTOR 21","Similar to RALF && sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1 && PF05498:Rapid ALkalinization Factor (RALF)"]
[5,6406272,6406323,52,15,0.174141305364354,0.323396593539553,-0.149255288175199,-63.6463850978491,"CHG","5:6405994:6406600","CGI"]
[5,6548936,6549088,153,43,0.07222942168766,0.256453647202887,-0.184224225515227,-297.379160605888,"CHH","5:6547976:6549977","CGI_shore"]
[5,6548936,6549088,153,43,0.07222942168766,0.256453647202887,-0.184224225515227,-297.379160605888,"CHH","Os05g0205100","promoter","Os05g0205100","NLI interacting factor domain containing protein && sp|O59718|NEM1_SCHPO Nuclear envelope morphology protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nem1 PE=3 SV=1 && PF03031:NLI interacting factor-like phosphatase"]
[5,6601369,6601451,83,12,0.496136145895579,0.794893927662526,-0.298757781766947,-61.3130548227836,"CG","5:6600870:6602871","CGI_shore"]
[5,6601369,6601451,83,12,0.496136145895579,0.794893927662526,-0.298757781766947,-61.3130548227836,"CG","5:6601177:6603177","CGI_shore"]
[5,6705531,6705664,134,19,0.216987792846393,0.508723462202797,-0.291735669356403,-97.5546625966258,"CHG","5:6705271:6705606","CGI"]
[5,6705531,6705664,134,19,0.216987792846393,0.508723462202797,-0.291735669356403,-97.5546625966258,"CHG","5:6705606:6707607","CGI_shore"]
[5,6722522,6722589,68,14,0.497089778348508,0.868085471636396,-0.370995693287887,-73.7512215242335,"CG","Os05g0208550","intron","Os05g0208550","Similar to gibberellin 2-beta-dioxygenase && sp|Q8S0S6|G2OX3_ORYSJ Gibberellin 2-beta-dioxygenase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=GA2OX3 PE=1 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily"]
[5,6722522,6722589,68,14,0.497089778348508,0.868085471636396,-0.370995693287887,-73.7512215242335,"CG","Os05g0208500","utr3","Os05g0208500","Hypothetical protein && - && -"]
[5,6722522,6722589,68,14,0.497089778348508,0.868085471636396,-0.370995693287887,-73.7512215242335,"CG","Os05g0208500","exon","Os05g0208500","Hypothetical protein && - && -"]
[5,6722522,6722589,68,14,0.497089778348508,0.868085471636396,-0.370995693287887,-73.7512215242335,"CG","5:6721926:6723477","CGI"]
[5,6859689,6859747,59,8,0.207454426876816,0.46380783288498,-0.256353406008165,-38.6615709713969,"CG","Os05g0210525","promoter","Os05g0210525","Hypothetical conserved gene && - && -"]
[5,6859689,6859747,59,8,0.207454426876816,0.46380783288498,-0.256353406008165,-38.6615709713969,"CG","5:6859351:6861352","CGI_shore"]
[5,6859689,6859747,59,8,0.207454426876816,0.46380783288498,-0.256353406008165,-38.6615709713969,"CG","Os05g0210600","intron","Os05g0210600","Molecular chaperone, heat shock protein, Hsp40, DnaJ domain containing protein && sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana OX=3702 GN=TTL1 PE=1 SV=1 && PF00515:Tetratricopeptide repeat"]
[5,6947544,6947734,191,37,0.194319777739928,0.397887732295019,-0.20356795455509,-186.067729455005,"CHH","5:6945793:6947793","CGI_shore"]
[5,7098030,7098085,56,10,0.559674057418196,0.727644617961153,-0.167970560542957,-37.4329195343203,"CHG","5:7088364:7099645","CGI"]
[5,7135602,7135797,196,10,0.155211651517295,0.549745368430567,-0.394533716913272,-54.1696704016003,"CG","5:7134341:7137741","CGI"]
[5,7135602,7135797,196,10,0.155211651517295,0.549745368430567,-0.394533716913272,-54.1696704016003,"CG","Os05g0215033","promoter","Os05g0215033","Hypothetical gene && sp|Q6I5B2|BURP6_ORYSJ BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=BURP6 PE=2 SV=1 && PF03181:BURP domain"]
[5,7135602,7135797,196,10,0.155211651517295,0.549745368430567,-0.394533716913272,-54.1696704016003,"CG","Os05g0215000","promoter","BURP domain-containing protein 1","BURP domain containing protein && sp|Q6I5B3|BURP1_ORYSJ BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BURP1 PE=2 SV=1 && PF03181:BURP domain"]
[5,7259340,7259442,103,19,0.250782272342854,0.477905494675543,-0.22712322233269,-98.175639630085,"CHH","5:7257616:7259616","CGI_shore"]
[5,7259340,7259442,103,19,0.250782272342854,0.477905494675543,-0.22712322233269,-98.175639630085,"CHH","Os05g0217900","promoter","Os05g0217900","Hypothetical conserved gene && - && -"]
[5,7533380,7533459,80,7,0.23979255843073,0.514478179325337,-0.274685620894607,-31.6415386538924,"CG","5:7531984:7533984","CGI_shore"]
[5,7533380,7533459,80,7,0.23979255843073,0.514478179325337,-0.274685620894607,-31.6415386538924,"CG","5:7532597:7534598","CGI_shore"]
[5,7548100,7548175,76,26,0.0139006865933196,0.147946209173009,-0.13404552257969,-136.516285287196,"CHH","5:7546107:7548107","CGI_shore"]
[5,7548100,7548175,76,26,0.0139006865933196,0.147946209173009,-0.13404552257969,-136.516285287196,"CHH","5:7548108:7548651","CGI"]
[5,7572252,7572325,74,10,0.0563124677208487,0.284437453557479,-0.22812498583663,-57.2440629783788,"CHG","5:7570313:7572314","CGI_shore"]
[5,7572252,7572325,74,10,0.0563124677208487,0.284437453557479,-0.22812498583663,-57.2440629783788,"CHG","5:7572212:7574213","CGI_shore"]
[5,7801112,7801203,92,11,0.320056952564592,0.624113156194364,-0.304056203629772,-47.6024947510977,"CHG","5:7799778:7801778","CGI_shore"]
[5,7801112,7801203,92,11,0.320056952564592,0.624113156194364,-0.304056203629772,-47.6024947510977,"CHG","5:7800738:7802739","CGI_shore"]
[5,8205636,8205765,130,40,0.375155211494446,0.55619000613244,-0.181034794637995,-209.278445639248,"CHG","5:8204499:8205776","CGI"]
[5,8205636,8205765,130,40,0.375155211494446,0.55619000613244,-0.181034794637995,-209.278445639248,"CHG","5:8205762:8207762","CGI_shore"]
[5,8671703,8671764,62,4,0.458441929726118,0.679550660698946,-0.221108730972828,-18.2329411152152,"CHG","5:8668444:8672672","CGI"]
[5,8671703,8671764,62,4,0.458441929726118,0.679550660698946,-0.221108730972828,-18.2329411152152,"CHG","Os05g0242400","promoter","PHOTOSYSTEM I SUBUNIT","Conserved hypothetical protein && sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAN PE=2 SV=1 && -"]
[5,8723219,8723295,77,10,0.599224435296542,0.771118010596981,-0.171893575300439,-42.5486397908779,"CHG","5:8721912:8723913","CGI_shore"]
[5,8723219,8723295,77,10,0.599224435296542,0.771118010596981,-0.171893575300439,-42.5486397908779,"CHG","5:8722543:8724543","CGI_shore"]
[5,8723219,8723295,77,10,0.599224435296542,0.771118010596981,-0.171893575300439,-42.5486397908779,"CHG","5:8722773:8723358","CGI"]
[5,8770242,8770429,188,30,0.269943028852966,0.453042342076784,-0.183099313223818,-163.980425737427,"CG","Os05g0244500","promoter","Os05g0244500","Glycoside hydrolase, family 5 protein && sp|Q10444|EXG2_SCHPO Glucan 1,3-beta-glucosidase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exg2 PE=3 SV=1 && PF00150:Cellulase (glycosyl hydrolase family 5)"]
[5,8770242,8770429,188,30,0.269943028852966,0.453042342076784,-0.183099313223818,-163.980425737427,"CG","Os05g0244500","exon","Os05g0244500","Glycoside hydrolase, family 5 protein && sp|Q10444|EXG2_SCHPO Glucan 1,3-beta-glucosidase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exg2 PE=3 SV=1 && PF00150:Cellulase (glycosyl hydrolase family 5)"]
[5,8839347,8839522,176,53,0.450898754377643,0.667191313719812,-0.216292559342168,-276.208920848161,"CG","5:8837763:8840172","CGI"]
[5,8839347,8839522,176,53,0.450898754377643,0.667191313719812,-0.216292559342168,-276.208920848161,"CG","Os05g0244800","exon","Os05g0244800","Hypothetical protein && - && PF08711:TFIIS helical bundle-like domain"]
[5,8839347,8839522,176,53,0.450898754377643,0.667191313719812,-0.216292559342168,-276.208920848161,"CG","Os05g0244900","exon","Os05g0244900","Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type domain containing protein && - && PF08711:TFIIS helical bundle-like domain"]
[5,8839347,8839522,176,53,0.450898754377643,0.667191313719812,-0.216292559342168,-276.208920848161,"CG","Os05g0244800","utr5","Os05g0244800","Hypothetical protein && - && PF08711:TFIIS helical bundle-like domain"]
[5,8839347,8839522,176,53,0.450898754377643,0.667191313719812,-0.216292559342168,-276.208920848161,"CG","Os05g0244800","TSS","Os05g0244800","Hypothetical protein && - && PF08711:TFIIS helical bundle-like domain"]
[5,8839347,8839522,176,53,0.450898754377643,0.667191313719812,-0.216292559342168,-276.208920848161,"CG","Os05g0244800","promoter","Os05g0244800","Hypothetical protein && - && PF08711:TFIIS helical bundle-like domain"]
[5,9096521,9096622,102,9,0.151234960967575,0.377706836923553,-0.226471875955979,-43.6711289068561,"CHG","5:9096248:9098248","CGI_shore"]
[5,9108789,9108869,81,4,0.193823225161229,0.479468948731296,-0.285645723570067,-22.9486713550499,"CG","5:9108579:9122792","CGI"]
[5,9143953,9144154,202,14,0.262360682299894,0.537901285749647,-0.275540603449753,-77.3530342373988,"CHG","5:9142003:9144004","CGI_shore"]
[5,9388027,9388127,101,17,0.212218074997813,0.397177321052225,-0.184959246054412,-70.0277481953017,"CHG","5:9386843:9388843","CGI_shore"]
[5,9388027,9388127,101,17,0.212218074997813,0.397177321052225,-0.184959246054412,-70.0277481953017,"CHG","5:9387546:9388182","CGI"]
[5,9455333,9455540,208,31,0.11302338336632,0.374743573051066,-0.261720189684747,-209.873841709272,"CG","5:9455194:9455832","CGI"]
[5,9539782,9539851,70,4,0.201711881867192,0.479147749145929,-0.277435867278737,-18.4539391580054,"CHG","5:9539427:9541428","CGI_shore"]
[5,10422682,10422772,91,24,0.0261075988308808,0.130105172127053,-0.103997573296172,-100.779981536458,"CHH","5:10412701:10445823","CGI"]
[5,10539486,10539620,135,35,0.0231821730853768,0.101791149058247,-0.0786089759728706,-173.417549917397,"CHH","5:10538940:10540940","CGI_shore"]
[5,10539486,10539620,135,35,0.0231821730853768,0.101791149058247,-0.0786089759728706,-173.417549917397,"CHH","Os05g0267100","intron","Os05g0267100","Similar to Transporter-like protein && - && -"]
[5,10579814,10579879,66,11,0.164419901052135,0.645243179338063,-0.480823278285928,-68.2779939283197,"CHG","5:10578657:10580658","CGI_shore"]
[5,10579814,10579879,66,11,0.164419901052135,0.645243179338063,-0.480823278285928,-68.2779939283197,"CHG","5:10579478:10580636","CGI"]
[5,10579901,10580091,191,61,0.0432008824511574,0.161712897930742,-0.118512015479585,-288.594642949467,"CHH","5:10578657:10580658","CGI_shore"]
[5,10579901,10580091,191,61,0.0432008824511574,0.161712897930742,-0.118512015479585,-288.594642949467,"CHH","5:10579478:10580636","CGI"]
[5,10580063,10580139,77,29,0.627049054286379,0.815239016360201,-0.188189962073821,-114.148954266108,"CG","5:10578657:10580658","CGI_shore"]
[5,10580063,10580139,77,29,0.627049054286379,0.815239016360201,-0.188189962073821,-114.148954266108,"CG","5:10579478:10580636","CGI"]
[5,10588415,10588502,88,14,0.248220890644505,0.489512334612839,-0.241291443968334,-60.1384042596338,"CHG","5:10586619:10588619","CGI_shore"]
[5,10588415,10588502,88,14,0.248220890644505,0.489512334612839,-0.241291443968334,-60.1384042596338,"CHG","5:10587894:10588436","CGI"]
[5,10588415,10588502,88,14,0.248220890644505,0.489512334612839,-0.241291443968334,-60.1384042596338,"CHG","5:10588042:10590042","CGI_shore"]
[5,10588415,10588502,88,14,0.248220890644505,0.489512334612839,-0.241291443968334,-60.1384042596338,"CHG","5:10588436:10590437","CGI_shore"]
[5,10856884,10857118,235,53,0.156952700805318,0.474834350519187,-0.317881649713869,-350.348307838171,"CG","5:10854204:10859666","CGI"]
[5,10856903,10857119,217,40,0.0690647654544525,0.339114708004061,-0.270049942549608,-238.982802942422,"CHG","5:10854204:10859666","CGI"]
[5,11681496,11681614,119,19,0.0100598915940096,0.13327976736444,-0.123219875770431,-168.114838515576,"CHH","5:11680826:11682826","CGI_shore"]
[5,12616695,12616762,68,35,0.0178222428300698,0.0885407516275241,-0.0707185087974543,-155.012799264758,"CHH","5:12616521:12617542","CGI"]
[5,12650643,12650807,165,31,0.00673402672141055,0.0486121148959412,-0.0418780881745307,-114.112789691931,"CHH","5:12649445:12651445","CGI_shore"]
[5,12919618,12919695,78,18,0.525317721743282,0.782342081905457,-0.257024360162175,-84.2817032293348,"CG","5:12917448:12920140","CGI"]
[5,12959892,12960049,158,23,0.0413944290695495,0.118990990904823,-0.0775965618352732,-85.883490294524,"CG","ENSRNA049472429","promoter","Intron_gpII","Group II catalytic intron && - && -"]
[5,12959892,12960049,158,23,0.0413944290695495,0.118990990904823,-0.0775965618352732,-85.883490294524,"CG","5:12960031:12962031","CGI_shore"]
[5,12959892,12960049,158,23,0.0413944290695495,0.118990990904823,-0.0775965618352732,-85.883490294524,"CG","ENSRNA049472463","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[5,12959892,12960049,158,23,0.0413944290695495,0.118990990904823,-0.0775965618352732,-85.883490294524,"CG","ENSRNA049472487","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[5,12959892,12960049,158,23,0.0413944290695495,0.118990990904823,-0.0775965618352732,-85.883490294524,"CG","5:12959253:12961254","CGI_shore"]
[5,12959892,12960049,158,23,0.0413944290695495,0.118990990904823,-0.0775965618352732,-85.883490294524,"CG","ENSRNA049472556","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[5,12959965,12960023,59,8,0.0131979235089975,0.0644371275284303,-0.0512392040194328,-33.9702061994205,"CHG","ENSRNA049472429","promoter","Intron_gpII","Group II catalytic intron && - && -"]
[5,12959965,12960023,59,8,0.0131979235089975,0.0644371275284303,-0.0512392040194328,-33.9702061994205,"CHG","ENSRNA049472463","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[5,12959965,12960023,59,8,0.0131979235089975,0.0644371275284303,-0.0512392040194328,-33.9702061994205,"CHG","ENSRNA049472487","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[5,12959965,12960023,59,8,0.0131979235089975,0.0644371275284303,-0.0512392040194328,-33.9702061994205,"CHG","5:12959253:12961254","CGI_shore"]
[5,12959965,12960023,59,8,0.0131979235089975,0.0644371275284303,-0.0512392040194328,-33.9702061994205,"CHG","ENSRNA049472556","promoter","LSU_rRNA_eukarya","Eukaryotic large subunit ribosomal RNA && - && -"]
[5,13188702,13189017,316,21,0.0479899281014538,0.321184785748792,-0.273194857647338,-143.224930036801,"CG","5:13121832:13228560","CGI"]
[5,13958984,13959034,51,9,0.0482576732901853,0.170075549919077,-0.121817876628892,-48.8136018812504,"CHG","5:13957706:13959706","CGI_shore"]
[5,13958984,13959034,51,9,0.0482576732901853,0.170075549919077,-0.121817876628892,-48.8136018812504,"CHG","5:13957936:13959937","CGI_shore"]
[5,13958984,13959034,51,9,0.0482576732901853,0.170075549919077,-0.121817876628892,-48.8136018812504,"CHG","5:13958363:13960364","CGI_shore"]
[5,14268138,14268231,94,6,0.120072259049442,0.555271709629388,-0.435199450579946,-36.5741857015206,"CG","5:14266186:14268187","CGI_shore"]
[5,14268138,14268231,94,6,0.120072259049442,0.555271709629388,-0.435199450579946,-36.5741857015206,"CG","5:14266698:14268698","CGI_shore"]
[5,14354309,14354435,127,33,0.0152191589064532,0.131853071309732,-0.116633912403279,-182.654843298656,"CHH","5:14353257:14355818","CGI"]
[5,14354309,14354435,127,33,0.0152191589064532,0.131853071309732,-0.116633912403279,-182.654843298656,"CHH","Os05g0312201","exon","Os05g0312201","Hypothetical gene && - && -"]
[5,14354309,14354435,127,33,0.0152191589064532,0.131853071309732,-0.116633912403279,-182.654843298656,"CHH","Os05g0312201","utr3","Os05g0312201","Hypothetical gene && - && -"]
[5,14551036,14551171,136,33,0.447310428800864,0.795473078841738,-0.348162650040874,-168.534368937129,"CG","5:14550397:14551526","CGI"]
[5,14895826,14895886,61,5,0.197516575605916,0.536619609161851,-0.339103033555935,-23.7320376684652,"CHG","5:14893855:14895856","CGI_shore"]
[5,14956380,14956444,65,9,0.330599707559196,0.58293510839145,-0.252335400832254,-45.905673363994,"CHG","5:14955563:14966149","CGI"]
[5,14981099,14981154,56,6,0.385768574341371,0.764051624071158,-0.378283049729786,-31.3327876892607,"CHG","5:14976943:14983255","CGI"]
[5,15774747,15774843,97,32,0.57451949947881,0.800356790877488,-0.225837291398678,-149.7075023503,"CG","5:15773322:15775322","CGI_shore"]
[5,15774747,15774843,97,32,0.57451949947881,0.800356790877488,-0.225837291398678,-149.7075023503,"CG","5:15773424:15774985","CGI"]
[5,15774747,15774843,97,32,0.57451949947881,0.800356790877488,-0.225837291398678,-149.7075023503,"CG","Os05g0337400","promoter","Os05g0337400","Similar to heavy-metal-associated domain-containing protein && - && -"]
[5,15774750,15774859,110,19,0.0762911682435798,0.382041535665746,-0.305750367422166,-109.005695997576,"CHG","5:15773322:15775322","CGI_shore"]
[5,15774750,15774859,110,19,0.0762911682435798,0.382041535665746,-0.305750367422166,-109.005695997576,"CHG","5:15773424:15774985","CGI"]
[5,15774750,15774859,110,19,0.0762911682435798,0.382041535665746,-0.305750367422166,-109.005695997576,"CHG","Os05g0337400","promoter","Os05g0337400","Similar to heavy-metal-associated domain-containing protein && - && -"]
[5,15828223,15828427,205,62,0.0216164566916515,0.189183329590722,-0.167566872899071,-374.418846538241,"CHH","5:15820982:15828451","CGI"]
[5,16026668,16026815,148,31,0.246368361888876,0.439571154132919,-0.193202792244043,-130.968607402572,"CG","5:16025779:16027780","CGI_shore"]
[5,16026668,16026815,148,31,0.246368361888876,0.439571154132919,-0.193202792244043,-130.968607402572,"CG","5:16026207:16029384","CGI"]
[5,16027172,16027394,223,56,0.220842033690128,0.429101768763527,-0.208259735073399,-283.6183827635,"CG","5:16025779:16027780","CGI_shore"]
[5,16027172,16027394,223,56,0.220842033690128,0.429101768763527,-0.208259735073399,-283.6183827635,"CG","5:16026207:16029384","CGI"]
[5,16027346,16027412,67,8,0.0403591650086573,0.231067080425479,-0.190707915416821,-42.7530303898399,"CHG","5:16025779:16027780","CGI_shore"]
[5,16027346,16027412,67,8,0.0403591650086573,0.231067080425479,-0.190707915416821,-42.7530303898399,"CHG","5:16026207:16029384","CGI"]
[5,16080228,16080481,254,39,0.09219012942535,0.494444881720305,-0.402254752294955,-312.788451937159,"CG","5:16079649:16080767","CGI"]
[5,16138089,16138162,74,9,0.328429603476889,0.715962146814714,-0.387532543337824,-65.5321547554652,"CHG","5:16137077:16139077","CGI_shore"]
[5,16138089,16138162,74,9,0.328429603476889,0.715962146814714,-0.387532543337824,-65.5321547554652,"CHG","5:16137240:16138241","CGI"]
[5,16433062,16433174,113,22,0.0122294586096621,0.431380719610232,-0.41915126100057,-231.218506679041,"CHH","5:16431671:16433672","CGI_shore"]
[5,16477532,16477604,73,13,3.27685959069598E-3,0.0562928164563509,-0.0530159568656549,-68.5164787808636,"CHH","5:16476271:16478272","CGI_shore"]
[5,16654012,16654067,56,18,0.0224493298578952,0.0749643153526849,-0.0525149854947897,-80.8116830643642,"CHH","5:16654054:16656054","CGI_shore"]
[5,17017205,17017578,374,41,0.402655110353333,0.688585220541238,-0.285930110187906,-297.350972701772,"CG","5:17015991:17017991","CGI_shore"]
[5,17017205,17017578,374,41,0.402655110353333,0.688585220541238,-0.285930110187906,-297.350972701772,"CG","Os05g0358400","intron","Os05g0358400","Butirosin biosynthesis, BtrG-like domain containing protein && sp|Q6L482|P2C48_ORYSJ Probable protein phosphatase 2C 48 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0358500 PE=2 SV=1 && -"]
[5,17017205,17017578,374,41,0.402655110353333,0.688585220541238,-0.285930110187906,-297.350972701772,"CG","Os05g0358400","exon","Os05g0358400","Butirosin biosynthesis, BtrG-like domain containing protein && sp|Q6L482|P2C48_ORYSJ Probable protein phosphatase 2C 48 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0358500 PE=2 SV=1 && -"]
[5,17017205,17017578,374,41,0.402655110353333,0.688585220541238,-0.285930110187906,-297.350972701772,"CG","Os05g0358400","utr3","Os05g0358400","Butirosin biosynthesis, BtrG-like domain containing protein && sp|Q6L482|P2C48_ORYSJ Probable protein phosphatase 2C 48 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0358500 PE=2 SV=1 && -"]
[5,17187303,17187410,108,32,0.533586923604053,0.80026789850878,-0.266680974904727,-135.219872976277,"CG","5:17185725:17187412","CGI"]
[5,17277087,17277175,89,21,0.200195434730644,0.411245492312103,-0.211050057581459,-102.334633407675,"CG","Os05g0361900","exon","Os05g0361900","Mitochondrial carrier protein domain containing protein && sp|Q94AG6|SAMC1_ARATH S-adenosylmethionine carrier 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAMC1 PE=1 SV=1 && -"]
[5,17277087,17277175,89,21,0.200195434730644,0.411245492312103,-0.211050057581459,-102.334633407675,"CG","Os05g0361900","utr3","Os05g0361900","Mitochondrial carrier protein domain containing protein && sp|Q94AG6|SAMC1_ARATH S-adenosylmethionine carrier 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAMC1 PE=1 SV=1 && -"]
[5,17281526,17281712,187,64,0.26419814516311,0.440243236421757,-0.176045091258647,-361.41804344606,"CG","5:17280460:17281832","CGI"]
[5,17281526,17281712,187,64,0.26419814516311,0.440243236421757,-0.176045091258647,-361.41804344606,"CG","Os05g0361900","promoter","Os05g0361900","Mitochondrial carrier protein domain containing protein && sp|Q94AG6|SAMC1_ARATH S-adenosylmethionine carrier 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAMC1 PE=1 SV=1 && -"]
[5,17281526,17281712,187,64,0.26419814516311,0.440243236421757,-0.176045091258647,-361.41804344606,"CG","Os05g0362000","utr5","Os05g0362000","Similar to CLE family OsCLE506 protein && - && -"]
[5,17281526,17281712,187,64,0.26419814516311,0.440243236421757,-0.176045091258647,-361.41804344606,"CG","Os05g0362000","exon","Os05g0362000","Similar to CLE family OsCLE506 protein && - && -"]
[5,17319244,17319413,170,48,0.0176382111350439,0.0660965983641499,-0.048458387229106,-212.732981846572,"CHH","5:17318819:17321675","CGI"]
[5,17319244,17319413,170,48,0.0176382111350439,0.0660965983641499,-0.048458387229106,-212.732981846572,"CHH","Os05g0362600","exon","LATE EMBRYOGENESIS ABUNDANT PROTEIN 12","Late embryogenesis abundant protein, LEA-5 domain containing protein && sp|Q93WF6|SAG21_ARATH Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1 && PF03242:Late embryogenesis abundant protein"]
[5,17319244,17319413,170,48,0.0176382111350439,0.0660965983641499,-0.048458387229106,-212.732981846572,"CHH","Os05g0362600","TSS","LATE EMBRYOGENESIS ABUNDANT PROTEIN 12","Late embryogenesis abundant protein, LEA-5 domain containing protein && sp|Q93WF6|SAG21_ARATH Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1 && PF03242:Late embryogenesis abundant protein"]
[5,17319244,17319413,170,48,0.0176382111350439,0.0660965983641499,-0.048458387229106,-212.732981846572,"CHH","Os05g0362600","promoter","LATE EMBRYOGENESIS ABUNDANT PROTEIN 12","Late embryogenesis abundant protein, LEA-5 domain containing protein && sp|Q93WF6|SAG21_ARATH Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1 && PF03242:Late embryogenesis abundant protein"]
[5,17422057,17422158,102,18,0.603257596840627,0.886647535546169,-0.283389938705542,-73.8753352895228,"CG","5:17416154:17428632","CGI"]
[5,17521820,17521896,77,15,0.280559429538644,0.437309303637237,-0.156749874098593,-64.9720945531357,"CG","Os05g0365500","promoter","Os05g0365500","Tetratricopeptide-like helical domain containing protein && sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana OX=3702 GN=GRP23 PE=1 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[5,17521820,17521896,77,15,0.280559429538644,0.437309303637237,-0.156749874098593,-64.9720945531357,"CG","Os05g0365450","exon","Os05g0365450","Similar to GNS1/SUR4 membrane protein && - && -"]
[5,17521820,17521896,77,15,0.280559429538644,0.437309303637237,-0.156749874098593,-64.9720945531357,"CG","5:17520991:17523590","CGI"]
[5,17521820,17521896,77,15,0.280559429538644,0.437309303637237,-0.156749874098593,-64.9720945531357,"CG","Os05g0365450","utr5","Os05g0365450","Similar to GNS1/SUR4 membrane protein && - && -"]
[5,17521951,17522073,123,30,0.284218610690017,0.472458018518574,-0.188239407828556,-149.402187375914,"CG","Os05g0365500","promoter","Os05g0365500","Tetratricopeptide-like helical domain containing protein && sp|Q9SY69|PPR29_ARATH Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana OX=3702 GN=GRP23 PE=1 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[5,17521951,17522073,123,30,0.284218610690017,0.472458018518574,-0.188239407828556,-149.402187375914,"CG","5:17520991:17523590","CGI"]
[5,17521951,17522073,123,30,0.284218610690017,0.472458018518574,-0.188239407828556,-149.402187375914,"CG","Os05g0365450","promoter","Os05g0365450","Similar to GNS1/SUR4 membrane protein && - && -"]
[5,17830484,17830538,55,5,0.767395586565558,0.912927653842833,-0.145532067277275,-20.2190422363329,"CG","5:17828627:17830627","CGI_shore"]
[5,17833376,17833489,114,22,0.0843105078421872,0.205728404228891,-0.121417896386704,-100.551571531554,"CHG","5:17833126:17834618","CGI"]
[5,18251960,18252052,93,8,0.19128414013906,0.601015341755696,-0.409731201616636,-47.4727289942246,"CG","5:18250660:18252661","CGI_shore"]
[5,18292269,18292416,148,41,0.592427066225622,0.836379721916975,-0.243952655691353,-197.995964318403,"CG","5:18292198:18292463","CGI"]
[5,18340912,18340973,62,10,0.688197978903658,0.899188744311314,-0.210990765407656,-55.0838961384033,"CG","5:18338406:18341541","CGI"]
[5,18340912,18340973,62,10,0.688197978903658,0.899188744311314,-0.210990765407656,-55.0838961384033,"CG","Os05g0379500","promoter","resistance gene analog A1.1-4","Conserved hypothetical protein && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[5,18340912,18340973,62,10,0.688197978903658,0.899188744311314,-0.210990765407656,-55.0838961384033,"CG","Os05g0379300","exon","Os05g0379300","Conserved hypothetical protein && - && -"]
[5,18340912,18340973,62,10,0.688197978903658,0.899188744311314,-0.210990765407656,-55.0838961384033,"CG","Os05g0379300","utr5","Os05g0379300","Conserved hypothetical protein && - && -"]
[5,18341054,18341164,111,13,0.453187960977391,0.723114047570625,-0.269926086593233,-73.1697946701816,"CG","5:18338406:18341541","CGI"]
[5,18341054,18341164,111,13,0.453187960977391,0.723114047570625,-0.269926086593233,-73.1697946701816,"CG","Os05g0379500","promoter","resistance gene analog A1.1-4","Conserved hypothetical protein && sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 && PF18052:Rx N-terminal domain|PF00931:NB-ARC domain"]
[5,18341054,18341164,111,13,0.453187960977391,0.723114047570625,-0.269926086593233,-73.1697946701816,"CG","Os05g0379300","exon","Os05g0379300","Conserved hypothetical protein && - && -"]
[5,18341054,18341164,111,13,0.453187960977391,0.723114047570625,-0.269926086593233,-73.1697946701816,"CG","Os05g0379300","utr5","Os05g0379300","Conserved hypothetical protein && - && -"]
[5,18341054,18341164,111,13,0.453187960977391,0.723114047570625,-0.269926086593233,-73.1697946701816,"CG","Os05g0379300","TSS","Os05g0379300","Conserved hypothetical protein && - && -"]
[5,18341054,18341164,111,13,0.453187960977391,0.723114047570625,-0.269926086593233,-73.1697946701816,"CG","Os05g0379300","promoter","Os05g0379300","Conserved hypothetical protein && - && -"]
[5,19139946,19140033,88,25,0.0585473081129333,0.150532283456201,-0.0919849753432674,-109.451365908926,"CHH","5:19138073:19140074","CGI_shore"]
[5,19251432,19251599,168,36,0.293706808118447,0.438165631995057,-0.14445882387661,-180.872006722061,"CG","5:19251430:19252147","CGI"]
[5,19697566,19697746,181,31,0.105024110688998,0.353552108884418,-0.248527998195421,-174.209558044271,"CG","5:19696035:19698036","CGI_shore"]
[5,19697566,19697746,181,31,0.105024110688998,0.353552108884418,-0.248527998195421,-174.209558044271,"CG","5:19696725:19701000","CGI"]
[5,19715357,19715504,148,25,0.337299663599189,0.623147665068172,-0.285848001468984,-107.17363687041,"CHG","5:19713030:19715475","CGI"]
[5,19715357,19715504,148,25,0.337299663599189,0.623147665068172,-0.285848001468984,-107.17363687041,"CHG","Os05g0404901","exon","Os05g0404901","Conserved hypothetical protein && - && -"]
[5,19715357,19715504,148,25,0.337299663599189,0.623147665068172,-0.285848001468984,-107.17363687041,"CHG","Os05g0404901","utr3","Os05g0404901","Conserved hypothetical protein && - && -"]
[5,19715357,19715504,148,25,0.337299663599189,0.623147665068172,-0.285848001468984,-107.17363687041,"CHG","5:19715475:19717476","CGI_shore"]
[5,19715378,19715475,98,24,0.532820697975837,0.818929723682955,-0.286109025707118,-104.146633823299,"CG","5:19713030:19715475","CGI"]
[5,19715378,19715475,98,24,0.532820697975837,0.818929723682955,-0.286109025707118,-104.146633823299,"CG","Os05g0404901","exon","Os05g0404901","Conserved hypothetical protein && - && -"]
[5,19715378,19715475,98,24,0.532820697975837,0.818929723682955,-0.286109025707118,-104.146633823299,"CG","Os05g0404901","utr3","Os05g0404901","Conserved hypothetical protein && - && -"]
[5,19822753,19822882,130,18,0.0751390658906095,0.365294355217268,-0.290155289326659,-85.527042871514,"CG","5:19822148:19824149","CGI_shore"]
[5,19917051,19917312,262,45,0.134926495591078,0.576525532319694,-0.441599036728616,-309.502103705996,"CG","5:19915205:19924001","CGI"]
[5,20173694,20173761,68,8,0.335353454556999,0.600022266144566,-0.264668811587567,-39.7643727531337,"CHG","5:20170775:20174118","CGI"]
[5,20249376,20249562,187,27,0.283326464678551,0.570915520427581,-0.287589055749029,-146.468257546427,"CG","5:20247788:20249789","CGI_shore"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","5:20313218:20315219","CGI_shore"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","Os05g0415700","promoter","Os05g0415700","Glycoside hydrolase, family 20 protein && sp|Q8L7S6|HEXO3_ARATH Beta-hexosaminidase 3 OS=Arabidopsis thaliana OX=3702 GN=HEXO3 PE=1 SV=1 && PF14845:beta-acetyl hexosaminidase like|PF00728:Glycosyl hydrolase family 20, catalytic domain"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","5:20313454:20315454","CGI_shore"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","Os05g0415600","utr3","Os05g0415600","Similar to Beta-hexosaminidase beta chain precursor (EC 3.2.1.52) (N-acetyl-beta- glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B) && sp|Q8L7S6|HEXO3_ARATH Beta-hexosaminidase 3 OS=Arabidopsis thaliana OX=3702 GN=HEXO3 PE=1 SV=1 && -"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","Os05g0415600","exon","Os05g0415600","Similar to Beta-hexosaminidase beta chain precursor (EC 3.2.1.52) (N-acetyl-beta- glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B) && sp|Q8L7S6|HEXO3_ARATH Beta-hexosaminidase 3 OS=Arabidopsis thaliana OX=3702 GN=HEXO3 PE=1 SV=1 && -"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","Os05g0415700","TSS","Os05g0415700","Glycoside hydrolase, family 20 protein && sp|Q8L7S6|HEXO3_ARATH Beta-hexosaminidase 3 OS=Arabidopsis thaliana OX=3702 GN=HEXO3 PE=1 SV=1 && PF14845:beta-acetyl hexosaminidase like|PF00728:Glycosyl hydrolase family 20, catalytic domain"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","Os05g0415700","exon","Os05g0415700","Glycoside hydrolase, family 20 protein && sp|Q8L7S6|HEXO3_ARATH Beta-hexosaminidase 3 OS=Arabidopsis thaliana OX=3702 GN=HEXO3 PE=1 SV=1 && PF14845:beta-acetyl hexosaminidase like|PF00728:Glycosyl hydrolase family 20, catalytic domain"]
[5,20315101,20315245,145,43,0.0200331231805812,0.104054882777418,-0.0840217595968372,-272.94369107123,"CHH","Os05g0415700","utr5","Os05g0415700","Glycoside hydrolase, family 20 protein && sp|Q8L7S6|HEXO3_ARATH Beta-hexosaminidase 3 OS=Arabidopsis thaliana OX=3702 GN=HEXO3 PE=1 SV=1 && PF14845:beta-acetyl hexosaminidase like|PF00728:Glycosyl hydrolase family 20, catalytic domain"]
[5,20527268,20527416,149,43,0.0277659976351769,0.114697815635606,-0.0869318180004287,-230.383970805473,"CHH","5:20525924:20527924","CGI_shore"]
[5,20527268,20527416,149,43,0.0277659976351769,0.114697815635606,-0.0869318180004287,-230.383970805473,"CHH","5:20526902:20528903","CGI_shore"]
[5,20691239,20691298,60,8,0.345255011610535,0.732182708448597,-0.386927696838062,-44.4061137933032,"CG","5:20690431:20692076","CGI"]
[5,20691239,20691298,60,8,0.345255011610535,0.732182708448597,-0.386927696838062,-44.4061137933032,"CG","Os05g0421900","intron","GIBBERELLIN 20-OXIDASE 4","GA 20-oxidase4, GA metabolis && sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica OX=39946 GN=20ox2 PE=1 SV=1 && PF03171:2OG-Fe(II) oxygenase superfamily|PF14226:non-haem dioxygenase in morphine synthesis N-terminal"]
[5,20716180,20716283,104,9,0.0442720180105824,0.325013111742069,-0.280741093731487,-44.305723370041,"CHG","5:20714514:20716515","CGI_shore"]
[5,20716206,20716272,67,8,0.321945068357891,0.749558859197139,-0.427613790839248,-43.7297772596149,"CG","5:20714514:20716515","CGI_shore"]
[5,20823276,20823416,141,36,0.00581600848905271,0.193822770681395,-0.188006762192342,-286.65779788177,"CHH","5:20819714:20828711","CGI"]
[5,20846259,20846329,71,9,0.538685616205544,0.863785306841914,-0.325099690636371,-45.9814927232328,"CG","5:20845037:20847038","CGI_shore"]
[5,20846259,20846329,71,9,0.538685616205544,0.863785306841914,-0.325099690636371,-45.9814927232328,"CG","Os05g0425700","promoter","F-box protein 258","Similar to F-box protein AtFBL5 && sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A OS=Arabidopsis thaliana OX=3702 GN=SKP2A PE=1 SV=1 && -"]
[5,20846259,20846329,71,9,0.538685616205544,0.863785306841914,-0.325099690636371,-45.9814927232328,"CG","Os05g0425600","intron","Os05g0425600","Hypothetical protein && - && -"]
[5,20846259,20846329,71,9,0.538685616205544,0.863785306841914,-0.325099690636371,-45.9814927232328,"CG","Os05g0425650","exon","Os05g0425650","Conserved hypothetical protein && - && -"]
[5,20846259,20846329,71,9,0.538685616205544,0.863785306841914,-0.325099690636371,-45.9814927232328,"CG","5:20845791:20847500","CGI"]
[5,21679985,21680043,59,18,0.245284300192576,0.442324936865762,-0.197040636673186,-89.0567539477953,"CHH","5:21679515:21681516","CGI_shore"]
[5,22434028,22434123,96,15,0.604963919427035,0.817207837035472,-0.212243917608437,-72.186086622076,"CHG","Os05g0456800","promoter","Os05g0456800","Hypothetical gene && - && -"]
[5,22434260,22434454,195,22,0.548363384007275,0.784268739718076,-0.235905355710801,-107.441918632278,"CHG","Os05g0456800","promoter","Os05g0456800","Hypothetical gene && - && -"]
[5,22658340,22658541,202,35,0.0843388027455577,0.237204550500804,-0.152865747755246,-192.842661135373,"CHH","Os05g0461400","promoter","Os05g0461400","Similar to Histone H2A.2.1 && sp|A2Y5G8|H2A4_ORYSI Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1 && PF16211:C-terminus of histone H2A|PF00125:Core histone H2A/H2B/H3/H4"]
[5,22658340,22658541,202,35,0.0843388027455577,0.237204550500804,-0.152865747755246,-192.842661135373,"CHH","5:22658166:22660167","CGI_shore"]
[5,23085536,23085602,67,8,0.334409841466512,0.667814747525531,-0.333404906059019,-37.8892372275406,"CHG","Os05g0470000","promoter","trichome birefringence-like 11","Domain of unknown function DUF231, plant domain containing protein && sp|Q9LY46|TBL29_ARATH Protein ESKIMO 1 OS=Arabidopsis thaliana OX=3702 GN=ESK1 PE=1 SV=1 && PF14416:PMR5 N terminal Domain|PF13839:GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p"]
[5,23085536,23085602,67,8,0.334409841466512,0.667814747525531,-0.333404906059019,-37.8892372275406,"CHG","5:23054050:23089600","CGI"]
[5,23272209,23272518,310,36,0.112844546485879,0.359212447009342,-0.246367900523463,-179.103006261666,"CG","5:23246322:23272544","CGI"]
[5,23513595,23513663,69,14,0.567566846727699,0.865749885832946,-0.298183039105247,-60.4712896405188,"CG","Os05g0478200","promoter","Os05g0478200","Conserved hypothetical protein && - && -"]
[5,23688936,23689042,107,27,0.0346880966521595,0.133979496378737,-0.0992913997265774,-133.031666796478,"CG","5:23688832:23691271","CGI"]
[5,23728192,23728445,254,26,0.320722022541894,0.746031728024466,-0.425309705482572,-154.904180916696,"CG","Os05g0482400","promoter","ELONGATED UPPERMOST INTERNODE 1","Cytochrome P450 monooxygenase, Gibberellin (GA)-deactivating enzyme, Modulation of internode elongatio && sp|Q5KQH7|C14D1_ORYSJ Cytochrome P450 714D1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYP714D1 PE=1 SV=1 && PF00067:Cytochrome P450"]
[5,23728192,23728445,254,26,0.320722022541894,0.746031728024466,-0.425309705482572,-154.904180916696,"CG","5:23726571:23728571","CGI_shore"]
[5,24096579,24096681,103,32,0.0110382084838491,0.151584558418186,-0.140546349934337,-120.707227633283,"CHH","5:24094930:24096930","CGI_shore"]
[5,24172735,24172818,84,4,0.117269383933047,0.602615266817208,-0.485345882884161,-22.0826294828078,"CG","5:24171883:24173884","CGI_shore"]
[5,24172735,24172818,84,4,0.117269383933047,0.602615266817208,-0.485345882884161,-22.0826294828078,"CG","5:24171924:24173924","CGI_shore"]
[5,24172735,24172818,84,4,0.117269383933047,0.602615266817208,-0.485345882884161,-22.0826294828078,"CG","Os05g0491700","promoter","VQ motif-containing protein 20","VQ domain containing protein && - && PF05678:VQ motif"]
[5,24273389,24273518,130,10,0.413911819568972,0.680623721080224,-0.266711901511252,-56.4304583611062,"CG","5:24271633:24273634","CGI_shore"]
[5,24273389,24273518,130,10,0.413911819568972,0.680623721080224,-0.266711901511252,-56.4304583611062,"CG","5:24272307:24274307","CGI_shore"]
[5,24273389,24273518,130,10,0.413911819568972,0.680623721080224,-0.266711901511252,-56.4304583611062,"CG","Os05g0494050","exon","Os05g0494050","Hypothetical gene && sp|O48956|C98A1_SORBI Cytochrome P450 98A1 OS=Sorghum bicolor OX=4558 GN=CYP98A1 PE=2 SV=1 && -"]
[5,24273389,24273518,130,10,0.413911819568972,0.680623721080224,-0.266711901511252,-56.4304583611062,"CG","Os05g0494050","utr3","Os05g0494050","Hypothetical gene && sp|O48956|C98A1_SORBI Cytochrome P450 98A1 OS=Sorghum bicolor OX=4558 GN=CYP98A1 PE=2 SV=1 && -"]
[5,24273389,24273518,130,10,0.413911819568972,0.680623721080224,-0.266711901511252,-56.4304583611062,"CG","Os05g0494000","exon","p-coumaroyl shikimate/quinate 3-hydroxylase 1","p-Coumaroyl ester 3-hydroxylase, Determination of lignin content, composition and the degree of cell wall cross-linkin && sp|O48956|C98A1_SORBI Cytochrome P450 98A1 OS=Sorghum bicolor OX=4558 GN=CYP98A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[5,24479969,24480033,65,7,0.266598498750175,0.574570847220829,-0.307972348470653,-33.9328083583991,"CG","5:24478724:24480724","CGI_shore"]
[5,24479969,24480033,65,7,0.266598498750175,0.574570847220829,-0.307972348470653,-33.9328083583991,"CG","Os05g0497675","promoter","Os05g0497675","Ribosomal L11 methyltransferase family protein && sp|A4JBD7|PRMA_BURVG Ribosomal protein L11 methyltransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) OX=269482 GN=prmA PE=3 SV=1 && PF06325:Ribosomal protein L11 methyltransferase (PrmA)"]
[5,24491470,24491776,307,21,0.463365325506597,0.817554557014435,-0.354189231507838,-133.828418969722,"CG","5:24490699:24492699","CGI_shore"]
[5,24496473,24496616,144,12,0.403229913153522,0.669135415009766,-0.265905501856244,-57.4138562437635,"CHG","5:24495385:24497386","CGI_shore"]
[5,24542590,24542705,116,13,0.239449298696568,0.496844606388137,-0.257395307691569,-70.0464476666043,"CG","Os05g0498500","promoter","Os05g0498500","Conserved hypothetical protein && - && -"]
[5,24542590,24542705,116,13,0.239449298696568,0.496844606388137,-0.257395307691569,-70.0464476666043,"CG","5:24541798:24543798","CGI_shore"]
[5,24851151,24851238,88,19,0.262319226949314,0.579695844758253,-0.31737661780894,-101.874347892217,"CHG","5:24850264:24852264","CGI_shore"]
[5,24851151,24851238,88,19,0.262319226949314,0.579695844758253,-0.31737661780894,-101.874347892217,"CHG","5:24850349:24851327","CGI"]
[5,24851152,24851303,152,44,0.55467635244206,0.834187568216114,-0.279511215774054,-220.207468209234,"CG","5:24850264:24852264","CGI_shore"]
[5,24851152,24851303,152,44,0.55467635244206,0.834187568216114,-0.279511215774054,-220.207468209234,"CG","5:24850349:24851327","CGI"]
[5,25210470,25210552,83,10,0.339817439287645,0.688755009747705,-0.34893757046006,-43.6290292302548,"CHG","5:25208777:25210777","CGI_shore"]
[5,25471044,25471332,289,81,0.454363990909671,0.612459164059574,-0.158095173149903,-507.131611165247,"CG","5:25465062:25471628","CGI"]
[5,25471044,25471332,289,81,0.454363990909671,0.612459164059574,-0.158095173149903,-507.131611165247,"CG","Os05g0513700","promoter","Os05g0513700","Reticulon domain containing protein && sp|F4I6V0|RAY1_ARATH Beta-arabinofuranosyltransferase RAY1 OS=Arabidopsis thaliana OX=3702 GN=RAY1 PE=2 SV=1 && PF03407:Nucleotide-diphospho-sugar transferase"]
[5,25497002,25497120,119,25,0.0160143394349062,0.185285061106538,-0.169270721671632,-141.650500429025,"CHH","Os05g0514300","promoter","tubby-like protein 10, tubby-like protein 9, F-box protein 267","Similar to Tubby-like protein 3 && sp|Q68Y48|TLP9_ORYSJ Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP9 PE=2 SV=1 && PF01167:Tub family|PF00646:F-box domain"]
[5,25497002,25497120,119,25,0.0160143394349062,0.185285061106538,-0.169270721671632,-141.650500429025,"CHH","5:25496083:25497953","CGI"]
[5,25534918,25535037,120,31,0.0545916764817466,0.122047008003731,-0.0674553315219847,-146.233821107687,"CHH","5:25533750:25535751","CGI_shore"]
[5,25534918,25535037,120,31,0.0545916764817466,0.122047008003731,-0.0674553315219847,-146.233821107687,"CHH","5:25534787:25536788","CGI_shore"]
[5,25673069,25673203,135,32,0.0166723327845002,0.287979366857271,-0.271307034072771,-233.578354985335,"CHH","5:25672976:25674977","CGI_shore"]
[5,25702716,25702906,191,38,0.229260677046073,0.43470203067147,-0.205441353625397,-235.106482607121,"CG","5:25700850:25702906","CGI"]
[5,25832092,25832164,73,26,0.0692582580866169,0.184214694633845,-0.114956436547228,-126.370931112824,"CHH","5:25830517:25832517","CGI_shore"]
[5,25832092,25832164,73,26,0.0692582580866169,0.184214694633845,-0.114956436547228,-126.370931112824,"CHH","Os05g0520300","promoter","GATA TRANSCRIPTION FACTOR 1","Similar to GATA transcription factor 3 (AtGATA-3) && sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1 && PF00320:GATA zinc finger"]
[5,26058387,26058451,65,27,0.0124382486176598,0.11588211490221,-0.10344386628455,-126.206090389701,"CHH","5:26056543:26058543","CGI_shore"]
[5,26058387,26058451,65,27,0.0124382486176598,0.11588211490221,-0.10344386628455,-126.206090389701,"CHH","5:26057945:26059946","CGI_shore"]
[5,26248157,26248211,55,14,0.00658501171043476,0.0927255946268206,-0.0861405829163858,-69.2950430575479,"CHH","5:26246880:26248881","CGI_shore"]
[5,26269672,26269736,65,14,0.080964220129299,0.308804900405689,-0.22784068027639,-78.4789275588833,"CHH","5:26267265:26271925","CGI"]
[5,26317412,26317554,143,37,0.022613621805097,0.227729980547107,-0.20511635874201,-253.990477493149,"CHH","5:26316986:26318929","CGI"]
[5,26569052,26569159,108,31,0.0718285022315725,0.123829560290332,-0.0520010580587597,-129.202712688921,"CG","5:26568938:26569446","CGI"]
[5,26932800,26932922,123,44,0.0133611830688481,0.0536336935132122,-0.0402725104443641,-216.198306223506,"CHH","5:26930987:26932988","CGI_shore"]
[5,26932800,26932922,123,44,0.0133611830688481,0.0536336935132122,-0.0402725104443641,-216.198306223506,"CHH","Os05g0542666","intron","Os05g0542666","Hypothetical protein && sp|B5X8M4|BRCC3_SALSA Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar OX=8030 GN=brcc3 PE=2 SV=1 && PF01398:JAB1/Mov34/MPN/PAD-1 ubiquitin protease"]
[5,26932800,26932922,123,44,0.0133611830688481,0.0536336935132122,-0.0402725104443641,-216.198306223506,"CHH","Os05g0542600","intron","Os05g0542600","Mov34/MPN/PAD-1 family protein && sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis OX=8364 GN=brcc3 PE=2 SV=1 && -"]
[5,26949959,26950166,208,21,0.182842012967353,0.441592798958122,-0.258750785990769,-100.119253823258,"CG","5:26949729:26951730","CGI_shore"]
[5,27052344,27052539,196,57,0.0311722797939861,0.106411949530835,-0.0752396697368488,-295.334284325011,"CHH","5:27050421:27052422","CGI_shore"]
[5,27557752,27557828,77,14,0.00793108678004011,0.0768996382012098,-0.0689685514211697,-74.0756719414022,"CHH","Os05g0554400","intron","SHORTENED UPPERMOST INTERNODE 2","Phosphatidyl serine synthase family protein && sp|Q6I628|PSS2_ORYSJ CDP-diacylglycerol--serine O-phosphatidyltransferase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PSS2 PE=2 SV=2 && -"]
[5,27557752,27557828,77,14,0.00793108678004011,0.0768996382012098,-0.0689685514211697,-74.0756719414022,"CHH","Os05g0554500","promoter","Os05g0554500","Conserved hypothetical protein && - && PF13324:Grap2 and cyclin-D-interacting"]
[5,27557752,27557828,77,14,0.00793108678004011,0.0768996382012098,-0.0689685514211697,-74.0756719414022,"CHH","5:27556765:27558765","CGI_shore"]
[5,28233718,28233778,61,6,0.256803511825163,0.698468843176507,-0.441665331351344,-35.2939557664564,"CG","Os05g0567100","promoter","Oryzasin, Oryzasin 1","Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-) && sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0567100 PE=2 SV=2 && PF00026:Eukaryotic aspartyl protease|PF05184:Saposin-like type B, region 1|PF03489:Saposin-like type B, region 2"]
[5,28233718,28233778,61,6,0.256803511825163,0.698468843176507,-0.441665331351344,-35.2939557664564,"CG","5:28232965:28234966","CGI_shore"]
[5,28233718,28233778,61,6,0.256803511825163,0.698468843176507,-0.441665331351344,-35.2939557664564,"CG","Os05g0567100","intron","Oryzasin, Oryzasin 1","Aspartic proteinase oryzasin 1 precursor (EC 3.4.23.-) && sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0567100 PE=2 SV=2 && PF00026:Eukaryotic aspartyl protease|PF05184:Saposin-like type B, region 1|PF03489:Saposin-like type B, region 2"]
[5,28383764,28383826,63,19,0.1355560450495,0.27895693844134,-0.14340089339184,-76.5022152650375,"CHH","5:28382346:28384347","CGI_shore"]
[5,28738320,28738548,229,38,0.0482256357125689,0.323661183159245,-0.275435547446676,-299.678942606778,"CHH","Os05g0576900","promoter","PIN PROTEIN 10B","Similar to PIN1-like auxin transport protein && sp|Q6L5F6|PIN3B_ORYSJ Probable auxin efflux carrier component 3b OS=Oryza sativa subsp. japonica OX=39947 GN=PIN3B PE=2 SV=3 && PF03547:Membrane transport protein"]
[5,28738320,28738548,229,38,0.0482256357125689,0.323661183159245,-0.275435547446676,-299.678942606778,"CHH","5:28735919:28739785","CGI"]
[5,28738320,28738548,229,38,0.0482256357125689,0.323661183159245,-0.275435547446676,-299.678942606778,"CHH","Os05g0577000","promoter","Os05g0577000","Hypothetical gene && - && -"]
[5,28748091,28748190,100,10,0.156699892109582,0.510034727305,-0.353334835195419,-46.8785144769148,"CHG","5:28746433:28748434","CGI_shore"]
[5,28748091,28748190,100,10,0.156699892109582,0.510034727305,-0.353334835195419,-46.8785144769148,"CHG","Os05g0577200","intron","IMCE","Carboxylesterase, type B family protein && sp|Q6L5F5|IMCE_ORYSJ Probable isoprenylcysteine alpha-carbonyl methylesterase ICME OS=Oryza sativa subsp. japonica OX=39947 GN=IMCE PE=2 SV=1 && PF07859:alpha/beta hydrolase fold"]
[5,28748091,28748190,100,10,0.156699892109582,0.510034727305,-0.353334835195419,-46.8785144769148,"CHG","5:28747805:28748263","CGI"]
[5,28969272,28969349,78,22,0.723547164657562,0.847346933822356,-0.123799769164795,-89.95869199695,"CG","5:28967390:28982749","CGI"]
[5,29015922,29015976,55,16,0.0228044086566975,0.168079700055211,-0.145275291398513,-73.5271708914885,"CHH","5:29014497:29016497","CGI_shore"]
[5,29035587,29035660,74,20,0.212200610600939,0.41021597473788,-0.198015364136941,-112.003534351227,"CG","5:29033833:29035810","CGI"]
[5,29035587,29035660,74,20,0.212200610600939,0.41021597473788,-0.198015364136941,-112.003534351227,"CG","Os05g0583400","exon","Os05g0583400","Similar to Mitochondrial import receptor subunit TOM7 (Translocase of outer membrane 7 kDa subunit) && sp|O82067|TOM7A_SOLTU Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum OX=4113 GN=TOM7-1 PE=3 SV=3 && -"]
[5,29767480,29767627,148,31,0.18038064453107,0.370404922720648,-0.190024278189578,-172.693274368162,"CHH","5:29765706:29767707","CGI_shore"]
[6,115247,115400,154,36,0.0185599187425947,0.188373221374321,-0.169813302631726,-190.600826483898,"CHH","6:115015:117016","CGI_shore"]
[6,119702,119766,65,6,0.0896582443821281,0.234863994352609,-0.14520574997048,-23.2030236767902,"CHG","6:118002:120002","CGI_shore"]
[6,119702,119766,65,6,0.0896582443821281,0.234863994352609,-0.14520574997048,-23.2030236767902,"CHG","6:118632:120633","CGI_shore"]
[6,119702,119766,65,6,0.0896582443821281,0.234863994352609,-0.14520574997048,-23.2030236767902,"CHG","6:118692:120692","CGI_shore"]
[6,610346,610432,87,14,0.422944260622401,0.692841458802626,-0.269897198180225,-62.092890226482,"CHG","6:608633:610634","CGI_shore"]
[6,610346,610432,87,14,0.422944260622401,0.692841458802626,-0.269897198180225,-62.092890226482,"CHG","6:609307:610431","CGI"]
[6,610346,610432,87,14,0.422944260622401,0.692841458802626,-0.269897198180225,-62.092890226482,"CHG","6:610431:612432","CGI_shore"]
[6,754573,754793,221,68,0.643104577598747,0.786365900498535,-0.143261322899789,-293.452334549625,"CG","6:747354:755951","CGI"]
[6,754640,754745,106,11,0.231179600231135,0.502918504135132,-0.271738903903997,-66.2948485421575,"CHG","6:747354:755951","CGI"]
[6,755270,755355,86,33,0.250808787375943,0.382619581872046,-0.131810794496102,-152.289872010468,"CG","6:747354:755951","CGI"]
[6,856133,856370,238,19,0.633960963166891,0.850018434693294,-0.216057471526403,-96.7536494577561,"CG","6:854850:856850","CGI_shore"]
[6,856133,856370,238,19,0.633960963166891,0.850018434693294,-0.216057471526403,-96.7536494577561,"CG","Os06g0115200","exon","Os06g0115200","Quinonprotein alcohol dehydrogenase-like domain containing protein && sp|Q9FRK5|Y1514_ARATH Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana OX=3702 GN=At1g75140 PE=1 SV=3 && -"]
[6,1052384,1052489,106,22,0.197115692340052,0.383092622819137,-0.185976930479085,-100.718033911595,"CHG","6:1050911:1052911","CGI_shore"]
[6,1402950,1403063,114,21,0.0762053159045717,0.302570476713138,-0.226365160808566,-97.3238313392056,"CHH","6:1398195:1406736","CGI"]
[6,1402950,1403063,114,21,0.0762053159045717,0.302570476713138,-0.226365160808566,-97.3238313392056,"CHH","Os06g0126250","promoter","RECEPTOR-LIKE CYTOPLASMIC KINASE 193","Receptor-like kinase, A member of the Catharanthus roseus receptor-like kinase1-like (CrRLK1L) subfamily, Control of high-affinity potassium transporters, Regulation of pollen tube growth and integrit && sp|Q9SJT0|Y2214_ARATH Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana OX=3702 GN=At2g21480 PE=3 SV=1 && PF07714:Protein tyrosine kinase|PF12819:Malectin-like domain"]
[6,1846261,1846319,59,15,0.0508284737500257,0.147045987911367,-0.0962175141613411,-80.2041226079444,"CHH","Os06g0134400","exon","Os06g0134400","Protein of unknown function DUF3615 domain containing protein && - && PF12274:Protein of unknown function (DUF3615)"]
[6,1846261,1846319,59,15,0.0508284737500257,0.147045987911367,-0.0962175141613411,-80.2041226079444,"CHH","6:1846197:1848197","CGI_shore"]
[6,1846261,1846319,59,15,0.0508284737500257,0.147045987911367,-0.0962175141613411,-80.2041226079444,"CHH","Os06g0134400","intron","Os06g0134400","Protein of unknown function DUF3615 domain containing protein && - && PF12274:Protein of unknown function (DUF3615)"]
[6,2349346,2349542,197,41,0.418428983214882,0.809910685417214,-0.391481702202332,-286.087841720773,"CG","6:2349222:2349512","CGI"]
[6,2349346,2349542,197,41,0.418428983214882,0.809910685417214,-0.391481702202332,-286.087841720773,"CG","6:2349512:2351513","CGI_shore"]
[6,2396485,2396538,54,21,0.0176118003790086,0.110064470152479,-0.0924526697734706,-105.855511718945,"CHH","Os06g0145600","exon","Os06g0145600","Transferase family protein && sp|Q9LJB4|5MAT_ARATH Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase OS=Arabidopsis thaliana OX=3702 GN=5MAT PE=1 SV=1 && PF02458:Transferase family"]
[6,2396485,2396538,54,21,0.0176118003790086,0.110064470152479,-0.0924526697734706,-105.855511718945,"CHH","Os06g0145600","utr3","Os06g0145600","Transferase family protein && sp|Q9LJB4|5MAT_ARATH Malonyl-CoA:anthocyanidin 5-O-glucoside-6''-O-malonyltransferase OS=Arabidopsis thaliana OX=3702 GN=5MAT PE=1 SV=1 && PF02458:Transferase family"]
[6,2519707,2519758,52,10,0.605578773731109,0.811834552806697,-0.206255779075588,-45.5936015603255,"CG","6:2518625:2520626","CGI_shore"]
[6,2519707,2519758,52,10,0.605578773731109,0.811834552806697,-0.206255779075588,-45.5936015603255,"CG","6:2519442:2521442","CGI_shore"]
[6,2519707,2519758,52,10,0.605578773731109,0.811834552806697,-0.206255779075588,-45.5936015603255,"CG","Os06g0148300","utr5","Os06g0148300","Conserved hypothetical protein && - && -"]
[6,2519707,2519758,52,10,0.605578773731109,0.811834552806697,-0.206255779075588,-45.5936015603255,"CG","Os06g0148300","exon","Os06g0148300","Conserved hypothetical protein && - && -"]
[6,2576774,2576921,148,16,0.0999919276298636,0.617315136732231,-0.517323209102367,-122.031023272879,"CHG","Os06g0149801","promoter","Os06g0149801","Hypothetical gene && sp|P32260|CYSKP_SPIOL Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea OX=3562 GN=CYSK PE=1 SV=2 && PF00291:Pyridoxal-phosphate dependent enzyme"]
[6,2576839,2576894,56,26,0.016989588600227,0.162043014322316,-0.145053425722089,-169.261166705494,"CHH","Os06g0149801","promoter","Os06g0149801","Hypothetical gene && sp|P32260|CYSKP_SPIOL Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea OX=3562 GN=CYSK PE=1 SV=2 && PF00291:Pyridoxal-phosphate dependent enzyme"]
[6,2641693,2641867,175,64,0.233570063174504,0.424760615016675,-0.191190551842171,-308.916617691231,"CHH","Os06g0151200","promoter","Os06g0151200","Nucleotide-binding, alpha-beta plait domain containing protein && sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1 && PF00076:RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)"]
[6,2641693,2641867,175,64,0.233570063174504,0.424760615016675,-0.191190551842171,-308.916617691231,"CHH","6:2641540:2643541","CGI_shore"]
[6,3022624,3022701,78,39,0.657022642557993,0.845416684997144,-0.188394042439151,-193.70415324492,"CG","6:3022497:3027465","CGI"]
[6,3300580,3300652,73,18,0.615121469303167,0.911041007078856,-0.29591953777569,-94.1073286175515,"CG","Os06g0165300","exon","Os06g0165300","Transposase (putative), gypsy type domain containing protein && - && -"]
[6,3300580,3300652,73,18,0.615121469303167,0.911041007078856,-0.29591953777569,-94.1073286175515,"CG","Os06g0165300","utr3","Os06g0165300","Transposase (putative), gypsy type domain containing protein && - && -"]
[6,3300580,3300652,73,18,0.615121469303167,0.911041007078856,-0.29591953777569,-94.1073286175515,"CG","Os06g0165300","intron","Os06g0165300","Transposase (putative), gypsy type domain containing protein && - && -"]
[6,3300580,3300652,73,18,0.615121469303167,0.911041007078856,-0.29591953777569,-94.1073286175515,"CG","6:3298784:3318301","CGI"]
[6,3303821,3303920,100,22,0.049330342158055,0.201417809805976,-0.152087467647921,-132.045617607006,"CHH","Os06g0165300","promoter","Os06g0165300","Transposase (putative), gypsy type domain containing protein && - && -"]
[6,3303821,3303920,100,22,0.049330342158055,0.201417809805976,-0.152087467647921,-132.045617607006,"CHH","6:3298784:3318301","CGI"]
[6,3424013,3424135,123,48,0.0122768640251415,0.0618000175411491,-0.0495231535160076,-171.130121395666,"CHH","6:3423713:3425713","CGI_shore"]
[6,3713896,3714212,317,90,0.133141716082923,0.213929859726108,-0.080788143643185,-440.893892445134,"CG","6:3713703:3714446","CGI"]
[6,4561811,4561876,66,18,0.680258906198225,0.851427873060737,-0.171168966862511,-79.9762894868742,"CG","6:4558298:4562515","CGI"]
[6,4991701,4991763,63,20,0.0227560553933567,0.149018961649051,-0.126262906255694,-92.464442069801,"CHH","6:4991545:4993546","CGI_shore"]
[6,5174874,5175021,148,30,0.0822106254864565,0.312801596735101,-0.230590971248645,-179.079817503654,"CHH","6:5174518:5176518","CGI_shore"]
[6,5298804,5298915,112,36,0.00876663571270477,0.0755561711348158,-0.066789535422111,-202.960296442908,"CHH","6:5297420:5299420","CGI_shore"]
[6,5298804,5298915,112,36,0.00876663571270477,0.0755561711348158,-0.066789535422111,-202.960296442908,"CHH","Os06g0204700","promoter","Os06g0204700","Hypothetical protein && sp|Q9FJC0|FBD20_ARATH Putative FBD-associated F-box protein At5g53640 OS=Arabidopsis thaliana OX=3702 GN=At5g53640 PE=4 SV=2 && -"]
[6,5298804,5298915,112,36,0.00876663571270477,0.0755561711348158,-0.066789535422111,-202.960296442908,"CHH","Os06g0204800","promoter","GROWTH-REGULATING FACTOR 2","Similar to Growth-regulating factor 2 && sp|Q6AWY7|GRF2_ORYSJ Growth-regulating factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF2 PE=3 SV=1 && PF08879:WRC|PF08880:QLQ"]
[6,5298804,5298915,112,36,0.00876663571270477,0.0755561711348158,-0.066789535422111,-202.960296442908,"CHH","6:5298180:5300180","CGI_shore"]
[6,6046302,6046369,68,20,0.0300725651951538,0.100152309465693,-0.0700797442705397,-98.0040891216135,"CHH","6:6046251:6048252","CGI_shore"]
[6,6046302,6046369,68,20,0.0300725651951538,0.100152309465693,-0.0700797442705397,-98.0040891216135,"CHH","Os06g0218150","promoter","Os06g0218150","Conserved hypothetical protein && sp|Q38813|DNAJ1_ARATH Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATJ1 PE=2 SV=2 && -"]
[6,6262422,6262481,60,12,0.339925224910053,0.530328908347903,-0.19040368343785,-51.3893081413257,"CHG","6:6261274:6262765","CGI"]
[6,6262422,6262481,60,12,0.339925224910053,0.530328908347903,-0.19040368343785,-51.3893081413257,"CHG","6:6262183:6264183","CGI_shore"]
[6,6283370,6283461,92,13,0.0564189701313706,0.18350218418297,-0.127083214051599,-85.4818650840276,"CHH","Os06g0222100","promoter","TREHALOSE-6-PHOSPHATE PHOSHPHATASE 8","Similar to Ramosa 3 (Fragment) && sp|Q0DDI1|TPP8_ORYSJ Probable trehalose-phosphate phosphatase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=TPP8 PE=2 SV=3 && PF02358:Trehalose-phosphatase"]
[6,6283370,6283461,92,13,0.0564189701313706,0.18350218418297,-0.127083214051599,-85.4818650840276,"CHH","6:6281972:6283973","CGI_shore"]
[6,6377860,6377928,69,27,0.0582562642609593,0.21752549425538,-0.159269229994421,-126.729846046984,"CHH","6:6377824:6379825","CGI_shore"]
[6,6385620,6385730,111,19,0.0943307204394537,0.33527630741621,-0.240945586976757,-80.9096068644696,"CG","6:6384546:6386546","CGI_shore"]
[6,6420247,6420339,93,35,0.0455519258190286,0.135763627384035,-0.0902117015650063,-124.717970089524,"CG","Os06g0224000","exon","Os06g0224000","Protein of unknown function DUF3049 domain containing protein && - && PF11250:Fantastic Four meristem regulator"]
[6,6420247,6420339,93,35,0.0455519258190286,0.135763627384035,-0.0902117015650063,-124.717970089524,"CG","6:6419652:6420587","CGI"]
[6,6455462,6455683,222,26,0.505357772858436,0.803832867569074,-0.298475094710638,-138.172046381561,"CG","6:6455525:6457526","CGI_shore"]
[6,6455462,6455683,222,26,0.505357772858436,0.803832867569074,-0.298475094710638,-138.172046381561,"CG","Os06g0224400","promoter","Os06g0224400","Mitochodrial transcription termination factor-related family protein && - && PF02536:mTERF"]
[6,6455462,6455683,222,26,0.505357772858436,0.803832867569074,-0.298475094710638,-138.172046381561,"CG","6:6454501:6456502","CGI_shore"]
[6,6455462,6455683,222,26,0.505357772858436,0.803832867569074,-0.298475094710638,-138.172046381561,"CG","6:6455213:6455525","CGI"]
[6,6468522,6468767,246,72,0.0994206515956934,0.194656607619822,-0.095235956024129,-366.188364610648,"CG","6:6467013:6469638","CGI"]
[6,6468522,6468767,246,72,0.0994206515956934,0.194656607619822,-0.095235956024129,-366.188364610648,"CG","Os06g0224775","exon","Os06g0224775","Conserved hypothetical protein && sp|Q7Y0Y8|HDAC1_ORYSJ Histone deacetylase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC1 PE=1 SV=1 && -"]
[6,6469394,6469638,245,61,0.243474117133297,0.405559549446629,-0.162085432313332,-316.635211173368,"CG","6:6467013:6469638","CGI"]
[6,6469394,6469638,245,61,0.243474117133297,0.405559549446629,-0.162085432313332,-316.635211173368,"CG","Os06g0224775","promoter","Os06g0224775","Conserved hypothetical protein && sp|Q7Y0Y8|HDAC1_ORYSJ Histone deacetylase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC1 PE=1 SV=1 && -"]
[6,6528747,6528854,108,29,0.521754725179643,0.795880748493593,-0.27412602331395,-128.268457214755,"CG","6:6526921:6528922","CGI_shore"]
[6,6528747,6528854,108,29,0.521754725179643,0.795880748493593,-0.27412602331395,-128.268457214755,"CG","6:6528010:6530011","CGI_shore"]
[6,6528747,6528854,108,29,0.521754725179643,0.795880748493593,-0.27412602331395,-128.268457214755,"CG","6:6528540:6528828","CGI"]
[6,6528747,6528854,108,29,0.521754725179643,0.795880748493593,-0.27412602331395,-128.268457214755,"CG","6:6528615:6530615","CGI_shore"]
[6,6528747,6528854,108,29,0.521754725179643,0.795880748493593,-0.27412602331395,-128.268457214755,"CG","6:6528828:6530829","CGI_shore"]
[6,6702282,6702428,147,21,0.0614091797883612,0.411087622811318,-0.349678443022957,-148.958506768904,"CHH","6:6701433:6705197","CGI"]
[6,6702282,6702428,147,21,0.0614091797883612,0.411087622811318,-0.349678443022957,-148.958506768904,"CHH","Os06g0229000","promoter","FTSH6","Similar to FtsH protease (VAR2) (Zinc dependent protease) && sp|Q67WJ2|FTSH6_ORYSJ ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH6 PE=3 SV=1 && PF01434:Peptidase family M41"]
[6,6717787,6717849,63,5,0.263458912252427,0.490548010742607,-0.22708909849018,-21.9898223029138,"CG","Os06g0229200","utr5","Os06g0229200","Glycosyl transferase, family 31 protein && sp|Q8L7F9|B3GTF_ARATH Beta-1,3-galactosyltransferase GALT1 OS=Arabidopsis thaliana OX=3702 GN=GALT1 PE=1 SV=1 && PF01762:Galactosyltransferase|PF00337:Galactoside-binding lectin"]
[6,6717787,6717849,63,5,0.263458912252427,0.490548010742607,-0.22708909849018,-21.9898223029138,"CG","Os06g0229200","exon","Os06g0229200","Glycosyl transferase, family 31 protein && sp|Q8L7F9|B3GTF_ARATH Beta-1,3-galactosyltransferase GALT1 OS=Arabidopsis thaliana OX=3702 GN=GALT1 PE=1 SV=1 && PF01762:Galactosyltransferase|PF00337:Galactoside-binding lectin"]
[6,6717787,6717849,63,5,0.263458912252427,0.490548010742607,-0.22708909849018,-21.9898223029138,"CG","6:6717033:6719034","CGI_shore"]
[6,6885113,6885281,169,59,0.0349673920877826,0.231204161389202,-0.19623676930142,-380.506228171187,"CHH","6:6884129:6886129","CGI_shore"]
[6,6885113,6885281,169,59,0.0349673920877826,0.231204161389202,-0.19623676930142,-380.506228171187,"CHH","6:6884196:6886197","CGI_shore"]
[6,6885113,6885281,169,59,0.0349673920877826,0.231204161389202,-0.19623676930142,-380.506228171187,"CHH","6:6884873:6886874","CGI_shore"]
[6,7101991,7102451,461,41,0.0625688946193313,0.223520833201858,-0.160951938582526,-241.04369234835,"CHH","6:7100819:7102820","CGI_shore"]
[6,7397508,7397561,54,32,0.0171557255937575,0.0731699091208211,-0.0560141835270636,-159.549322611032,"CHH","6:7397502:7399503","CGI_shore"]
[6,7541018,7541246,229,63,0.230718918990116,0.422656985628945,-0.191938066638829,-375.881743235134,"CG","6:7539999:7542000","CGI_shore"]
[6,7541018,7541246,229,63,0.230718918990116,0.422656985628945,-0.191938066638829,-375.881743235134,"CG","6:7540519:7542520","CGI_shore"]
[6,7541018,7541246,229,63,0.230718918990116,0.422656985628945,-0.191938066638829,-375.881743235134,"CG","6:7540849:7542552","CGI"]
[6,8001992,8002056,65,16,0.023687538656654,0.0951777720583923,-0.0714902334017384,-93.7761788734275,"CHH","Os06g0254600","intron","Os06g0254600","Caleosin related family protein && sp|Q9CAB7|PXG4_ARATH Probable peroxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=PXG4 PE=1 SV=1 && PF05042:Caleosin related protein"]
[6,8004386,8004534,149,22,0.677803792096471,0.884949784208906,-0.207145992112435,-136.473140642268,"CG","Os06g0254600","intron","Os06g0254600","Caleosin related family protein && sp|Q9CAB7|PXG4_ARATH Probable peroxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=PXG4 PE=1 SV=1 && PF05042:Caleosin related protein"]
[6,8004386,8004534,149,22,0.677803792096471,0.884949784208906,-0.207145992112435,-136.473140642268,"CG","Os06g0254600","exon","Os06g0254600","Caleosin related family protein && sp|Q9CAB7|PXG4_ARATH Probable peroxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=PXG4 PE=1 SV=1 && PF05042:Caleosin related protein"]
[6,8186631,8186812,182,41,0.0620089325380081,0.181146308162109,-0.119137375624101,-244.861119526067,"CHH","6:8184903:8186904","CGI_shore"]
[6,8186631,8186812,182,41,0.0620089325380081,0.181146308162109,-0.119137375624101,-244.861119526067,"CHH","6:8186062:8188062","CGI_shore"]
[6,8186631,8186812,182,41,0.0620089325380081,0.181146308162109,-0.119137375624101,-244.861119526067,"CHH","6:8186452:8187045","CGI"]
[6,8189514,8189602,89,17,0.0673342148825743,0.277076022495576,-0.209741807613001,-76.5108331228831,"CHH","6:8189082:8191083","CGI_shore"]
[6,8281252,8281341,90,11,0.524934486226789,0.745398928664434,-0.220464442437644,-43.0910393565994,"CHG","6:8279795:8281796","CGI_shore"]
[6,8281252,8281341,90,11,0.524934486226789,0.745398928664434,-0.220464442437644,-43.0910393565994,"CHG","6:8280433:8282434","CGI_shore"]
[6,8281252,8281341,90,11,0.524934486226789,0.745398928664434,-0.220464442437644,-43.0910393565994,"CHG","6:8280948:8282948","CGI_shore"]
[6,8281252,8281341,90,11,0.524934486226789,0.745398928664434,-0.220464442437644,-43.0910393565994,"CHG","Os06g0258500","promoter","Os06g0258500","Myb transcription factor domain containing protein && - && PF00249:Myb-like DNA-binding domain"]
[6,8872097,8872152,56,15,0.431596724348798,0.764833015945737,-0.333236291596939,-93.5585931740352,"CHG","6:8842641:8877780","CGI"]
[6,9034954,9035048,95,6,0.585183368959593,0.867041666619029,-0.281858297659436,-26.8323154492376,"CG","Os06g0270200","exon","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 24","Similar to Potassium transporter 24 && sp|Q5Z6K9|HAK24_ORYSJ Potassium transporter 24 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK24 PE=3 SV=1 && PF02705:K+ potassium transporter"]
[6,9133582,9133672,91,11,0.466404145305093,0.698011613034893,-0.2316074677298,-51.7439524168795,"CHG","Os06g0271500","intron","Os06g0271500","Transposon, En/Spm-like domain containing protein && - && PF02992:Transposase family tnp2|PF13960:Domain of unknown function (DUF4218)"]
[6,9133582,9133672,91,11,0.466404145305093,0.698011613034893,-0.2316074677298,-51.7439524168795,"CHG","Os06g0271500","exon","Os06g0271500","Transposon, En/Spm-like domain containing protein && - && PF02992:Transposase family tnp2|PF13960:Domain of unknown function (DUF4218)"]
[6,9133582,9133672,91,11,0.466404145305093,0.698011613034893,-0.2316074677298,-51.7439524168795,"CHG","Os06g0271500","utr5","Os06g0271500","Transposon, En/Spm-like domain containing protein && - && PF02992:Transposase family tnp2|PF13960:Domain of unknown function (DUF4218)"]
[6,9133582,9133672,91,11,0.466404145305093,0.698011613034893,-0.2316074677298,-51.7439524168795,"CHG","6:9132938:9134938","CGI_shore"]
[6,9292242,9292329,88,22,0.149595699037973,0.268918548991043,-0.119322849953071,-123.801261763927,"CHH","6:9290607:9292607","CGI_shore"]
[6,9292242,9292329,88,22,0.149595699037973,0.268918548991043,-0.119322849953071,-123.801261763927,"CHH","6:9291076:9293076","CGI_shore"]
[6,9383962,9384012,51,4,0.0982213307932962,0.531606113879341,-0.433384783086044,-19.2078990991446,"CG","6:9382760:9384760","CGI_shore"]
[6,9388996,9389056,61,14,0.393948008710905,0.573910847834588,-0.179962839123682,-63.4013323563922,"CHG","6:9387226:9391660","CGI"]
[6,9390952,9391049,98,19,0.508850032699626,0.843283022421946,-0.33443298972232,-122.753463616219,"CG","6:9390502:9392502","CGI_shore"]
[6,9390952,9391049,98,19,0.508850032699626,0.843283022421946,-0.33443298972232,-122.753463616219,"CG","6:9387226:9391660","CGI"]
[6,9390981,9391050,70,8,0.212305071683755,0.598367874216627,-0.386062802532872,-44.1812152029549,"CHG","6:9390502:9392502","CGI_shore"]
[6,9390981,9391050,70,8,0.212305071683755,0.598367874216627,-0.386062802532872,-44.1812152029549,"CHG","6:9387226:9391660","CGI"]
[6,10084071,10084164,94,6,0.614760415365656,0.845343286757138,-0.230582871391481,-29.2687565454973,"CG","Os06g0284200","exon","Os06g0284200","Protein of unknown function DUF246, plant family protein && sp|Q4V398|RRT1_ARATH Rhamnogalacturonan I rhamnosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=RRT1 PE=1 SV=1 && PF10250:GDP-fucose protein O-fucosyltransferase"]
[6,10187448,10187532,85,4,0.16518361103437,0.645082158092817,-0.479898547058447,-21.3823574838862,"CHG","6:10186104:10188104","CGI_shore"]
[6,10187448,10187532,85,4,0.16518361103437,0.645082158092817,-0.479898547058447,-21.3823574838862,"CHG","Os06g0285920","intron","Os06g0285920","Hypothetical protein && - && PF13962:Domain of unknown function"]
[6,10600237,10600318,82,10,0.0842615585249773,0.270966586752667,-0.18670502822769,-49.0709998931691,"CHG","6:10598618:10600358","CGI"]
[6,10605802,10605864,63,11,0.139038698705165,0.423993825693048,-0.284955126987882,-50.4986537259125,"CG","6:10605741:10607742","CGI_shore"]
[6,10748487,10748584,98,20,0.549468484616013,0.84369688411668,-0.294228399500667,-96.932332352515,"CG","6:10748135:10750726","CGI"]
[6,10779301,10779430,130,53,0.372506010336547,0.605596272407361,-0.233090262070814,-268.278936596035,"CG","6:10778802:10779477","CGI"]
[6,10930135,10930328,194,46,0.0847254412088967,0.260450805405434,-0.175725364196537,-208.380346335326,"CHH","Os06g0296100","promoter","Os06g0296100","Conserved hypothetical protein && - && PF13962:Domain of unknown function"]
[6,10998808,10998892,85,4,0.186415551240467,0.753188248894994,-0.566772697654527,-20.6289902689702,"CG","6:10997109:10999110","CGI_shore"]
[6,10998808,10998892,85,4,0.186415551240467,0.753188248894994,-0.566772697654527,-20.6289902689702,"CG","6:10997998:10999998","CGI_shore"]
[6,11137974,11138167,194,59,0.0733710722969461,0.185467902189763,-0.112096829892817,-279.230462286354,"CHH","Os06g0299500","promoter","Os06g0299500","Similar to J023036E09, full insert sequence (Fragment) && sp|Q9M390|PTR1_ARATH Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1 && -"]
[6,11137974,11138167,194,59,0.0733710722969461,0.185467902189763,-0.112096829892817,-279.230462286354,"CHH","6:11135983:11137984","CGI_shore"]
[6,11137974,11138167,194,59,0.0733710722969461,0.185467902189763,-0.112096829892817,-279.230462286354,"CHH","6:11136267:11138267","CGI_shore"]
[6,11138452,11138513,62,14,0.0550154738864211,0.198655307303114,-0.143639833416693,-72.6288754750153,"CHH","6:11138268:11138573","CGI"]
[6,11138452,11138513,62,14,0.0550154738864211,0.198655307303114,-0.143639833416693,-72.6288754750153,"CHH","6:11138302:11140302","CGI_shore"]
[6,11894979,11895176,198,81,0.624104439987801,0.730650951188994,-0.106546511201193,-404.414477734278,"CG","6:11891635:11895534","CGI"]
[6,11937007,11937066,60,10,0.145527898775807,0.554514374091918,-0.408986475316111,-50.4993993607691,"CHG","6:11936356:11937188","CGI"]
[6,11990303,11990372,70,24,0.045486300466456,0.109637761199734,-0.0641514607332782,-111.081974616463,"CHH","6:11988345:11990346","CGI_shore"]
[6,11990303,11990372,70,24,0.045486300466456,0.109637761199734,-0.0641514607332782,-111.081974616463,"CHH","6:11989710:11991711","CGI_shore"]
[6,11990303,11990372,70,24,0.045486300466456,0.109637761199734,-0.0641514607332782,-111.081974616463,"CHH","Os06g0313440","promoter","Os06g0313440","SAM dependent carboxyl methyltransferase domain containing protein && sp|A0A061FBW2|JMT2_THECC Probable jasmonic acid carboxyl methyltransferase 2 OS=Theobroma cacao OX=3641 GN=TCM_034091 PE=3 SV=1 && PF03492:SAM dependent carboxyl methyltransferase"]
[6,11990303,11990372,70,24,0.045486300466456,0.109637761199734,-0.0641514607332782,-111.081974616463,"CHH","6:11990364:11992364","CGI_shore"]
[6,12370315,12370372,58,13,0.152351072541572,0.250887532783939,-0.0985364602423668,-53.1084756510629,"CG","6:12369788:12370463","CGI"]
[6,12575259,12575409,151,15,0.229128084223589,0.578241564831113,-0.349113480607524,-78.6228335680031,"CHG","6:12572949:12575889","CGI"]
[6,12786698,12786756,59,8,0.123210373064396,0.31211440977431,-0.188904036709913,-31.9405570732756,"CHG","6:12785140:12787141","CGI_shore"]
[6,12988513,12988612,100,16,0.603479883503976,0.868468341869841,-0.264988458365866,-76.5635893919855,"CG","6:12987031:12989032","CGI_shore"]
[6,12988513,12988612,100,16,0.603479883503976,0.868468341869841,-0.264988458365866,-76.5635893919855,"CG","6:12987777:12988621","CGI"]
[6,13132050,13132134,85,12,0.252058914438939,0.439717816244803,-0.187658901805864,-52.1221210791647,"CHG","6:13131827:13132713","CGI"]
[6,13535253,13535314,62,23,0.0256806747190214,0.0884729677790828,-0.0627922930600613,-100.508725982372,"CHH","6:13534477:13536477","CGI_shore"]
[6,13646625,13646698,74,20,0.0181146154010466,0.104686260470829,-0.0865716450697822,-88.3426954788894,"CHH","6:13645336:13647336","CGI_shore"]
[6,13782547,13782674,128,10,0.100201232157329,0.59143192685502,-0.491230694697692,-66.7297709215208,"CHG","6:13780759:13786907","CGI"]
[6,13903952,13904093,142,30,0.0110591647596015,0.228145362029268,-0.217086197269667,-179.442359728622,"CHH","6:13901478:13904699","CGI"]
[6,13903952,13904093,142,30,0.0110591647596015,0.228145362029268,-0.217086197269667,-179.442359728622,"CHH","Os06g0346400","promoter","Os06g0346400","Conserved hypothetical protein && - && -"]
[6,14549436,14549655,220,43,0.0132755240703715,0.322298980953343,-0.309023456882971,-283.877880626187,"CHH","6:14548695:14550695","CGI_shore"]
[6,14928378,14928439,62,8,0.217116745060492,0.498368586348774,-0.281251841288282,-46.0706715266749,"CHG","6:14927357:14929357","CGI_shore"]
[6,15202832,15202891,60,13,0.516053655237069,0.790299740789882,-0.274246085552813,-74.5818396733837,"CHG","6:15201450:15203450","CGI_shore"]
[6,15202832,15202891,60,13,0.516053655237069,0.790299740789882,-0.274246085552813,-74.5818396733837,"CHG","6:15201491:15203492","CGI_shore"]
[6,15393782,15394318,537,4,0.517350026029196,0.782670300470512,-0.265320274441315,-10.6902054344158,"CHG","6:15392501:15394502","CGI_shore"]
[6,16012640,16012730,91,29,0.503791439301995,0.81619484556132,-0.312403406259326,-123.287244650174,"CG","6:16009660:16012731","CGI"]
[6,16012640,16012730,91,29,0.503791439301995,0.81619484556132,-0.312403406259326,-123.287244650174,"CG","Os06g0476200","intron","Os06g0476200","Similar to Phosphoglucomutase precursor (EC 5.4.2.2) && sp|Q88C93|ALGC_PSEPK Phosphomannomutase/phosphoglucomutase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) OX=160488 GN=algC PE=3 SV=1 && PF02878:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I|PF02880:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III|PF02879:Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II"]
[6,16275758,16275840,83,23,0.17673874711853,0.332217894918058,-0.155479147799527,-122.791016297124,"CHH","6:16273870:16275870","CGI_shore"]
[6,16521803,16521922,120,21,0.697213621125671,0.847873494338251,-0.150659873212581,-101.066049421346,"CHG","Os06g0484950","utr3","Os06g0484950","MULE transposase domain domain containing protein && - && -"]
[6,16521803,16521922,120,21,0.697213621125671,0.847873494338251,-0.150659873212581,-101.066049421346,"CHG","Os06g0484950","exon","Os06g0484950","MULE transposase domain domain containing protein && - && -"]
[6,16556307,16556362,56,7,0.668228262465924,0.779679126287325,-0.111450863821401,-27.6150428207522,"CHG","6:16555867:16557867","CGI_shore"]
[6,16970521,16970609,89,31,0.0759442873931825,0.160606594633771,-0.084662307240589,-146.827364830706,"CG","6:16970003:16970634","CGI"]
[6,16970521,16970609,89,31,0.0759442873931825,0.160606594633771,-0.084662307240589,-146.827364830706,"CG","Os06g0491566","promoter","Os06g0491566","Conserved hypothetical protein && - && -"]
[6,17010809,17010937,129,12,0.336612470646828,0.658787525498669,-0.322175054851842,-62.8402113068182,"CHG","6:17008914:17010914","CGI_shore"]
[6,17010809,17010937,129,12,0.336612470646828,0.658787525498669,-0.322175054851842,-62.8402113068182,"CHG","Os06g0492000","promoter","Os06g0492000","Similar to Phosphatidylinositol synthase && sp|Q8GUK6|PIS2_ARATH Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=PIS2 PE=2 SV=2 && -"]
[6,17010809,17010937,129,12,0.336612470646828,0.658787525498669,-0.322175054851842,-62.8402113068182,"CHG","6:17010915:17011216","CGI"]
[6,17391695,17391902,208,29,0.47604314123759,0.808329524509781,-0.332286383272192,-176.416956001152,"CG","6:17389714:17391714","CGI_shore"]
[6,17391695,17391902,208,29,0.47604314123759,0.808329524509781,-0.332286383272192,-176.416956001152,"CG","6:17391715:17392019","CGI"]
[6,17749651,17749711,61,6,0.134082836740332,0.775108271050377,-0.641025434310045,-31.7453246420332,"CG","6:17745807:17753691","CGI"]
[6,17792593,17792702,110,16,0.270664628837561,0.459749797418178,-0.189085168580617,-96.889922711286,"CG","6:17792565:17792802","CGI"]
[6,17792593,17792702,110,16,0.270664628837561,0.459749797418178,-0.189085168580617,-96.889922711286,"CG","6:17791339:17793339","CGI_shore"]
[6,17792619,17792679,61,11,0.0139022052327518,0.0482244126588374,-0.0343222074260856,-40.3429071232465,"CHG","6:17792565:17792802","CGI"]
[6,17792619,17792679,61,11,0.0139022052327518,0.0482244126588374,-0.0343222074260856,-40.3429071232465,"CHG","6:17791339:17793339","CGI_shore"]
[6,18148358,18148432,75,6,0.0298350056877644,0.191137866841462,-0.161302861153697,-27.3520678401073,"CHG","6:18148248:18150249","CGI_shore"]
[6,18553276,18553556,281,85,0.290926024472231,0.627852095688296,-0.336926071216065,-682.534628897419,"CG","6:18553103:18553660","CGI"]
[6,18718643,18718734,92,5,0.34828044685798,0.686481070962262,-0.338200624104282,-24.8759688089994,"CHG","6:18717576:18719577","CGI_shore"]
[6,18825604,18825676,73,8,0.217745094880897,0.67721770382581,-0.459472608944914,-47.1330086665833,"CHG","6:18824675:18826675","CGI_shore"]
[6,18950384,18950497,114,8,0.400909889194351,0.745653625533519,-0.344743736339168,-45.4801174686837,"CG","Os06g0517500","intron","Os06g0517500","Hypothetical conserved gene && - && -"]
[6,18950384,18950497,114,8,0.400909889194351,0.745653625533519,-0.344743736339168,-45.4801174686837,"CG","6:18949296:18951297","CGI_shore"]
[6,18950384,18950497,114,8,0.400909889194351,0.745653625533519,-0.344743736339168,-45.4801174686837,"CG","ENSRNA049469415","exon","SSU_rRNA_eukarya","Eukaryotic small subunit ribosomal RNA && - && -"]
[6,18950384,18950497,114,8,0.400909889194351,0.745653625533519,-0.344743736339168,-45.4801174686837,"CG","ENSRNA049469415","TSS","SSU_rRNA_eukarya","Eukaryotic small subunit ribosomal RNA && - && -"]
[6,18950384,18950497,114,8,0.400909889194351,0.745653625533519,-0.344743736339168,-45.4801174686837,"CG","ENSRNA049469415","promoter","SSU_rRNA_eukarya","Eukaryotic small subunit ribosomal RNA && - && -"]
[6,18950432,18950482,51,4,0.289347043592582,0.57286484909473,-0.283517805502148,-18.3645820022029,"CHG","Os06g0517500","intron","Os06g0517500","Hypothetical conserved gene && - && -"]
[6,18950432,18950482,51,4,0.289347043592582,0.57286484909473,-0.283517805502148,-18.3645820022029,"CHG","6:18949296:18951297","CGI_shore"]
[6,18950432,18950482,51,4,0.289347043592582,0.57286484909473,-0.283517805502148,-18.3645820022029,"CHG","ENSRNA049469415","exon","SSU_rRNA_eukarya","Eukaryotic small subunit ribosomal RNA && - && -"]
[6,18984099,18984194,96,21,0.146550073148645,0.56249786628838,-0.415947793139735,-161.782075817123,"CG","6:18975488:18984564","CGI"]
[6,18984099,18984194,96,21,0.146550073148645,0.56249786628838,-0.415947793139735,-161.782075817123,"CG","Os06g0518300","promoter","Os06g0518300","Hypothetical conserved gene && - && -"]
[6,18984099,18984194,96,21,0.146550073148645,0.56249786628838,-0.415947793139735,-161.782075817123,"CG","6:18983418:18985418","CGI_shore"]
[6,18984099,18984194,96,21,0.146550073148645,0.56249786628838,-0.415947793139735,-161.782075817123,"CG","Os06g0518300","TSS","Os06g0518300","Hypothetical conserved gene && - && -"]
[6,18984099,18984194,96,21,0.146550073148645,0.56249786628838,-0.415947793139735,-161.782075817123,"CG","Os06g0518300","utr5","Os06g0518300","Hypothetical conserved gene && - && -"]
[6,18984099,18984194,96,21,0.146550073148645,0.56249786628838,-0.415947793139735,-161.782075817123,"CG","Os06g0518300","exon","Os06g0518300","Hypothetical conserved gene && - && -"]
[6,19106410,19106509,100,12,0.0520767302278819,0.285848550933083,-0.233771820705201,-79.1789753787031,"CHG","Os06g0520600","intron","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43","Similar to Zinc finger CCCH type domain containing protein ZFN-like 1 && sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0520600 PE=2 SV=1 && PF02854:MIF4G domain|PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[6,19106410,19106509,100,12,0.0520767302278819,0.285848550933083,-0.233771820705201,-79.1789753787031,"CHG","Os06g0520600","exon","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43","Similar to Zinc finger CCCH type domain containing protein ZFN-like 1 && sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0520600 PE=2 SV=1 && PF02854:MIF4G domain|PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[6,19106410,19106509,100,12,0.0520767302278819,0.285848550933083,-0.233771820705201,-79.1789753787031,"CHG","6:19106485:19108485","CGI_shore"]
[6,19504098,19504186,89,27,0.0193927554268239,0.124119848533689,-0.104727093106865,-128.69789793002,"CHH","Os06g0526400","intron","pyrabactin resistance-like 12","Similar to AT-rich element binding factor 3 && sp|Q6EN42|PYL3_ORYSJ Abscisic acid receptor PYL3 OS=Oryza sativa subsp. japonica OX=39947 GN=PYL3 PE=1 SV=1 && PF10604:Polyketide cyclase / dehydrase and lipid transport"]
[6,19504466,19504570,105,36,0.0318503975721367,0.127387094586398,-0.0955366970142611,-173.655686654422,"CHH","Os06g0526400","intron","pyrabactin resistance-like 12","Similar to AT-rich element binding factor 3 && sp|Q6EN42|PYL3_ORYSJ Abscisic acid receptor PYL3 OS=Oryza sativa subsp. japonica OX=39947 GN=PYL3 PE=1 SV=1 && PF10604:Polyketide cyclase / dehydrase and lipid transport"]
[6,19724811,19724872,62,31,0.0814009964071708,0.397590450763363,-0.316189454356192,-215.004478553277,"CHH","6:19724266:19724998","CGI"]
[6,19804124,19804259,136,41,0.0122961439851222,0.0524375118134606,-0.0401413678283383,-175.626768992117,"CHH","6:19802900:19804901","CGI_shore"]
[6,19804124,19804259,136,41,0.0122961439851222,0.0524375118134606,-0.0401413678283383,-175.626768992117,"CHH","6:19803687:19805688","CGI_shore"]
[6,20012956,20013006,51,8,0.255448914183747,0.596696856717622,-0.341247942533876,-42.5726682575821,"CHG","6:20011245:20013245","CGI_shore"]
[6,20012956,20013006,51,8,0.255448914183747,0.596696856717622,-0.341247942533876,-42.5726682575821,"CHG","6:20011821:20013822","CGI_shore"]
[6,20024931,20025002,72,7,0.322572494353466,0.67304655510095,-0.350474060747484,-35.6821675268743,"CHG","Os06g0535100","promoter","RNA helicase 51","Similar to predicted protein && sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 PE=3 SV=2 && PF00270:DEAD/DEAH box helicase|PF13959:Domain of unknown function (DUF4217)|PF00271:Helicase conserved C-terminal domain"]
[6,20024931,20025002,72,7,0.322572494353466,0.67304655510095,-0.350474060747484,-35.6821675268743,"CHG","6:20018983:20026124","CGI"]
[6,20109584,20109650,67,15,0.0419774281957022,0.214283653896921,-0.172306225701219,-81.8417503683976,"CHH","Os06g0536800","promoter","Os06g0536800","Hypothetical protein && - && -"]
[6,20109584,20109650,67,15,0.0419774281957022,0.214283653896921,-0.172306225701219,-81.8417503683976,"CHH","6:20109578:20111579","CGI_shore"]
[6,20147128,20147212,85,23,0.0185984734942073,0.082822282499872,-0.0642238090056647,-133.51910894346,"CHH","Os06g0537700","intron","Os06g0537700","X8 domain containing protein && sp|Q9M2K6|PDCB5_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana OX=3702 GN=PDCB5 PE=2 SV=2 && PF07983:X8 domain"]
[6,20147128,20147212,85,23,0.0185984734942073,0.082822282499872,-0.0642238090056647,-133.51910894346,"CHH","6:20145638:20147638","CGI_shore"]
[6,20244376,20244433,58,20,0.0100562093319514,0.063692799431164,-0.0536365900992126,-88.5022734610851,"CHH","Os06g0539250","exon","Os06g0539250","Similar to SWIM zinc finger family protein && - && -"]
[6,20244376,20244433,58,20,0.0100562093319514,0.063692799431164,-0.0536365900992126,-88.5022734610851,"CHH","Os06g0539250","utr3","Os06g0539250","Similar to SWIM zinc finger family protein && - && -"]
[6,20244376,20244433,58,20,0.0100562093319514,0.063692799431164,-0.0536365900992126,-88.5022734610851,"CHH","6:20243727:20245728","CGI_shore"]
[6,20310745,20310795,51,6,0.0540624528445528,0.257426596396038,-0.203364143551485,-33.6731567212473,"CHG","6:20309163:20311164","CGI_shore"]
[6,20310745,20310795,51,6,0.0540624528445528,0.257426596396038,-0.203364143551485,-33.6731567212473,"CHG","6:20310451:20312452","CGI_shore"]
[6,20318603,20318757,155,45,0.0311398603996906,0.123902760301676,-0.0927628999019858,-168.830812697316,"CHH","6:20313008:20318996","CGI"]
[6,20318686,20318797,112,33,0.565931501495735,0.786763543801644,-0.220832042305909,-143.112963346046,"CG","6:20313008:20318996","CGI"]
[6,20347504,20347582,79,13,0.219313378431466,0.561687283084187,-0.342373904652721,-61.6953723339942,"CHG","6:20346915:20348915","CGI_shore"]
[6,20791657,20791725,69,20,0.0266446237360979,0.142968595472213,-0.116323971736116,-87.0672958797662,"CHH","6:20791423:20792758","CGI"]
[6,20791657,20791725,69,20,0.0266446237360979,0.142968595472213,-0.116323971736116,-87.0672958797662,"CHH","6:20790943:20792944","CGI_shore"]
[6,20921794,20921968,175,59,0.619923311251704,0.858928888689991,-0.239005577438287,-323.154698769455,"CG","6:20920739:20922060","CGI"]
[6,20921907,20922093,187,23,0.244694091165939,0.561520994212034,-0.316826903046095,-140.571768497283,"CHG","6:20920739:20922060","CGI"]
[6,20921907,20922093,187,23,0.244694091165939,0.561520994212034,-0.316826903046095,-140.571768497283,"CHG","6:20921980:20923980","CGI_shore"]
[6,20921907,20922093,187,23,0.244694091165939,0.561520994212034,-0.316826903046095,-140.571768497283,"CHG","6:20922060:20924061","CGI_shore"]
[6,20939872,20940023,152,51,0.150758663367955,0.439944068841796,-0.289185405473841,-317.357261126342,"CHH","Os06g0552300","promoter","BZR3","BZR1, transcriptional repressor family protein && sp|Q5Z9E5|BZR3_ORYSJ Protein BZR1 homolog 3 OS=Oryza sativa subsp. japonica OX=39947 GN=BZR3 PE=1 SV=1 && PF05687:BES1/BZR1 plant transcription factor, N-terminal"]
[6,20939872,20940023,152,51,0.150758663367955,0.439944068841796,-0.289185405473841,-317.357261126342,"CHH","6:20939327:20941535","CGI"]
[6,21480017,21480130,114,9,0.362627546654463,0.663921611567593,-0.30129406491313,-45.5165987227097,"CG","Os06g0561000","exon","Myo-inositol oxygenase","Myo-inositol oxygenase, Drought stress toleranc && sp|Q5Z8T3|MIOX_ORYSJ Probable inositol oxygenase OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0561000 PE=2 SV=1 && PF05153:Myo-inositol oxygenase"]
[6,21480017,21480130,114,9,0.362627546654463,0.663921611567593,-0.30129406491313,-45.5165987227097,"CG","Os06g0561000","intron","Myo-inositol oxygenase","Myo-inositol oxygenase, Drought stress toleranc && sp|Q5Z8T3|MIOX_ORYSJ Probable inositol oxygenase OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0561000 PE=2 SV=1 && PF05153:Myo-inositol oxygenase"]
[6,21480017,21480130,114,9,0.362627546654463,0.663921611567593,-0.30129406491313,-45.5165987227097,"CG","6:21478268:21480268","CGI_shore"]
[6,21760157,21760213,57,11,0.40784307185824,0.77356074129955,-0.36571766944131,-55.7886123477498,"CG","Os06g0565100","promoter","OsMAX1b","Cytochrome P450 family member,  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1 && sp|B9DFU2|MAX1_ARATH Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,21760157,21760213,57,11,0.40784307185824,0.77356074129955,-0.36571766944131,-55.7886123477498,"CG","Os06g0565200","promoter","HEAT STRESS TRANSCRIPTION FACTOR A6","Putative heat stress transcription factor A-6a && sp|Q5Z6A4|HFA6A_ORYSJ Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA6A PE=3 SV=1 && PF00447:HSF-type DNA-binding"]
[6,21760157,21760213,57,11,0.40784307185824,0.77356074129955,-0.36571766944131,-55.7886123477498,"CG","6:21755610:21765338","CGI"]
[6,21760281,21760540,260,70,0.325200195945901,0.534289505504969,-0.209089309559068,-403.318845186487,"CG","Os06g0565100","promoter","OsMAX1b","Cytochrome P450 family member,  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1 && sp|B9DFU2|MAX1_ARATH Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,21760281,21760540,260,70,0.325200195945901,0.534289505504969,-0.209089309559068,-403.318845186487,"CG","Os06g0565200","promoter","HEAT STRESS TRANSCRIPTION FACTOR A6","Putative heat stress transcription factor A-6a && sp|Q5Z6A4|HFA6A_ORYSJ Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA6A PE=3 SV=1 && PF00447:HSF-type DNA-binding"]
[6,21760281,21760540,260,70,0.325200195945901,0.534289505504969,-0.209089309559068,-403.318845186487,"CG","6:21755610:21765338","CGI"]
[6,21760285,21760434,150,15,0.156658718438908,0.41852357055692,-0.261864852118012,-78.9503722991185,"CHG","Os06g0565100","promoter","OsMAX1b","Cytochrome P450 family member,  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1 && sp|B9DFU2|MAX1_ARATH Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,21760285,21760434,150,15,0.156658718438908,0.41852357055692,-0.261864852118012,-78.9503722991185,"CHG","Os06g0565200","promoter","HEAT STRESS TRANSCRIPTION FACTOR A6","Putative heat stress transcription factor A-6a && sp|Q5Z6A4|HFA6A_ORYSJ Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA6A PE=3 SV=1 && PF00447:HSF-type DNA-binding"]
[6,21760285,21760434,150,15,0.156658718438908,0.41852357055692,-0.261864852118012,-78.9503722991185,"CHG","6:21755610:21765338","CGI"]
[6,21760321,21760521,201,65,0.0923441148286365,0.22317140609223,-0.130827291263593,-379.168585149211,"CHH","Os06g0565100","promoter","OsMAX1b","Cytochrome P450 family member,  Homolog of Arabidopsis MORE AXILLARY GROWTH 1 (MAX1 && sp|B9DFU2|MAX1_ARATH Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,21760321,21760521,201,65,0.0923441148286365,0.22317140609223,-0.130827291263593,-379.168585149211,"CHH","Os06g0565200","promoter","HEAT STRESS TRANSCRIPTION FACTOR A6","Putative heat stress transcription factor A-6a && sp|Q5Z6A4|HFA6A_ORYSJ Putative heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA6A PE=3 SV=1 && PF00447:HSF-type DNA-binding"]
[6,21760321,21760521,201,65,0.0923441148286365,0.22317140609223,-0.130827291263593,-379.168585149211,"CHH","6:21755610:21765338","CGI"]
[6,21832926,21833011,86,17,0.234628954416096,0.511627493690926,-0.276998539274831,-100.171565244737,"CHG","6:21832814:21833550","CGI"]
[6,21928616,21928736,121,11,0.0802186095381358,0.383039728408111,-0.302821118869975,-65.2237108624384,"CG","6:21861870:21934498","CGI"]
[6,21933665,21933743,79,15,0.218959044596979,0.506042745909616,-0.287083701312637,-69.9728445439278,"CHG","6:21861870:21934498","CGI"]
[6,21934577,21934758,182,50,0.0391080259605239,0.173179092060923,-0.134071066100399,-279.152095624086,"CHH","6:21934498:21936499","CGI_shore"]
[6,21951634,21951759,126,18,0.0374817805488003,0.221004689617521,-0.183522909068721,-102.589914950919,"CHH","6:21950855:21952855","CGI_shore"]
[6,21951634,21951759,126,18,0.0374817805488003,0.221004689617521,-0.183522909068721,-102.589914950919,"CHH","6:21951559:21953560","CGI_shore"]
[6,21951634,21951759,126,18,0.0374817805488003,0.221004689617521,-0.183522909068721,-102.589914950919,"CHH","Os06g0567900","intron","ASCORBATE OXIDASE 2","L-ascorbate oxidase, Cold, salt, drought stress respons && sp|P37064|ASO_CUCPM L-ascorbate oxidase OS=Cucurbita pepo var. melopepo OX=3665 PE=1 SV=1 && PF07732:Multicopper oxidase|PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[6,21951634,21951759,126,18,0.0374817805488003,0.221004689617521,-0.183522909068721,-102.589914950919,"CHH","Os06g0567950","intron","Os06g0567950","Hypothetical protein && sp|P37064|ASO_CUCPM L-ascorbate oxidase OS=Cucurbita pepo var. melopepo OX=3665 PE=1 SV=1 && PF00394:Multicopper oxidase|PF07731:Multicopper oxidase"]
[6,22048932,22049031,100,24,0.687866821286695,0.885748230304511,-0.197881409017816,-110.22254266361,"CG","6:22047777:22049778","CGI_shore"]
[6,22048932,22049031,100,24,0.687866821286695,0.885748230304511,-0.197881409017816,-110.22254266361,"CG","Os06g0569900","exon","ENT-KAURENE OXIDASE 1","Similar to Ent-kaurene oxidase 1 (Fragment) && sp|Q5Z5R7|C701S_ORYSJ Ent-kaurene oxidase-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYP701A19 PE=2 SV=1 && PF00067:Cytochrome P450"]
[6,22048932,22049031,100,24,0.687866821286695,0.885748230304511,-0.197881409017816,-110.22254266361,"CG","6:22048840:22050840","CGI_shore"]
[6,22197320,22197457,138,19,0.00681804797151249,0.193870953044048,-0.187052905072536,-117.171786034547,"CHH","6:22195697:22197697","CGI_shore"]
[6,22197320,22197457,138,19,0.00681804797151249,0.193870953044048,-0.187052905072536,-117.171786034547,"CHH","Os06g0572400","TES","TETRASPANIN 9","Tetraspanin domain containing protein && sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1 && PF00335:Tetraspanin family"]
[6,22197320,22197457,138,19,0.00681804797151249,0.193870953044048,-0.187052905072536,-117.171786034547,"CHH","Os06g0572400","utr3","TETRASPANIN 9","Tetraspanin domain containing protein && sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1 && PF00335:Tetraspanin family"]
[6,22197320,22197457,138,19,0.00681804797151249,0.193870953044048,-0.187052905072536,-117.171786034547,"CHH","Os06g0572400","exon","TETRASPANIN 9","Tetraspanin domain containing protein && sp|Q9ZUN5|TET2_ARATH Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1 && PF00335:Tetraspanin family"]
[6,22728631,22728717,87,9,0.289469479065703,0.590253228353814,-0.300783749288111,-42.489051860896,"CHG","6:22727977:22729977","CGI_shore"]
[6,22728631,22728717,87,9,0.289469479065703,0.590253228353814,-0.300783749288111,-42.489051860896,"CHG","6:22728631:22729236","CGI"]
[6,22737551,22737707,157,44,0.646480615188361,0.865489219599007,-0.219008604410646,-227.978741005272,"CG","6:22736493:22737961","CGI"]
[6,22774835,22774943,109,37,0.0108568332834891,0.105246151518592,-0.0943893182351027,-248.763759951263,"CHH","6:22774867:22776867","CGI_shore"]
[6,22858920,22859063,144,37,0.52662138151876,0.74660974620416,-0.2199883646854,-216.802652891759,"CG","6:22856973:22858974","CGI_shore"]
[6,23089104,23089187,84,16,0.323892676041405,0.642539470677902,-0.318646794636496,-76.3020712303032,"CHG","Os06g0588450","intron","Os06g0588450","Hypothetical conserved gene && - && -"]
[6,23089104,23089187,84,16,0.323892676041405,0.642539470677902,-0.318646794636496,-76.3020712303032,"CHG","6:23087984:23089222","CGI"]
[6,23134760,23134856,97,8,0.575214421014,0.840697760636751,-0.265483339622751,-41.2360907945618,"CG","Os06g0589600","TSS","Os06g0589600","Protein kinase, core domain containing protein && sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana OX=3702 GN=At1g14390 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[6,23134760,23134856,97,8,0.575214421014,0.840697760636751,-0.265483339622751,-41.2360907945618,"CG","Os06g0589600","utr5","Os06g0589600","Protein kinase, core domain containing protein && sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana OX=3702 GN=At1g14390 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[6,23134760,23134856,97,8,0.575214421014,0.840697760636751,-0.265483339622751,-41.2360907945618,"CG","Os06g0589600","exon","Os06g0589600","Protein kinase, core domain containing protein && sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana OX=3702 GN=At1g14390 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[6,23134760,23134856,97,8,0.575214421014,0.840697760636751,-0.265483339622751,-41.2360907945618,"CG","Os06g0589600","promoter","Os06g0589600","Protein kinase, core domain containing protein && sp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana OX=3702 GN=At1g14390 PE=1 SV=1 && PF07714:Protein tyrosine kinase"]
[6,23134760,23134856,97,8,0.575214421014,0.840697760636751,-0.265483339622751,-41.2360907945618,"CG","6:23133053:23135054","CGI_shore"]
[6,23202407,23202602,196,22,0.249080389210436,0.598679434778287,-0.349599045567851,-106.359545217711,"CHG","6:23196383:23207186","CGI"]
[6,23520743,23520843,101,11,0.410369383736812,0.841709414248796,-0.431340030511984,-49.812715000168,"CG","6:23519766:23521766","CGI_shore"]
[6,24073841,24073933,93,23,0.0164377894863764,0.115647866143914,-0.099210076657538,-108.38783348935,"CHH","Os06g0606100","promoter","Os06g0606100","Hypothetical conserved gene && - && -"]
[6,24073841,24073933,93,23,0.0164377894863764,0.115647866143914,-0.099210076657538,-108.38783348935,"CHH","6:24072442:24074443","CGI_shore"]
[6,24126599,24126727,129,26,0.288136251589921,0.526940942281177,-0.238804690691256,-125.489750458079,"CG","6:24125086:24127086","CGI_shore"]
[6,24126599,24126727,129,26,0.288136251589921,0.526940942281177,-0.238804690691256,-125.489750458079,"CG","Os06g0607000","promoter","Os06g0607000","Similar to Beta-1,3-glucanase && sp|Q9ZQG9|E1314_ARATH Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana OX=3702 GN=At2g27500 PE=2 SV=2 && PF00332:Glycosyl hydrolases family 17"]
[6,24156952,24157050,99,8,0.42164889545325,0.814063858429476,-0.392414962976225,-40.7332917703101,"CHG","6:24155456:24157457","CGI_shore"]
[6,24540704,24540856,153,23,0.375134542102813,0.616178318895242,-0.241043776792429,-99.2383176850052,"CG","6:24539098:24541098","CGI_shore"]
[6,24540704,24540856,153,23,0.375134542102813,0.616178318895242,-0.241043776792429,-99.2383176850052,"CG","6:24540620:24542621","CGI_shore"]
[6,24686300,24686418,119,11,0.301083857455609,0.599602260244069,-0.29851840278846,-48.0212695659277,"CHG","6:24684480:24686481","CGI_shore"]
[6,24785547,24785642,96,11,0.0882805400150681,0.373038902906593,-0.284758362891525,-58.373371648334,"CG","6:24785328:24785602","CGI"]
[6,24785547,24785642,96,11,0.0882805400150681,0.373038902906593,-0.284758362891525,-58.373371648334,"CG","6:24785602:24787603","CGI_shore"]
[6,25219015,25219120,106,20,0.295856353264825,0.708377049523606,-0.412520696258781,-105.52448735014,"CG","6:25214027:25222933","CGI"]
[6,25289964,25290206,243,25,0.0298851655701023,0.177410260707189,-0.147525095137087,-100.630594824802,"CHG","Os06g0626466","exon","Os06g0626466","Hypothetical conserved gene && - && -"]
[6,25289964,25290206,243,25,0.0298851655701023,0.177410260707189,-0.147525095137087,-100.630594824802,"CHG","Os06g0626466","utr3","Os06g0626466","Hypothetical conserved gene && - && -"]
[6,25289964,25290206,243,25,0.0298851655701023,0.177410260707189,-0.147525095137087,-100.630594824802,"CHG","Os06g0626466","intron","Os06g0626466","Hypothetical conserved gene && - && -"]
[6,25343342,25343526,185,20,0.280926412695989,0.701317214449092,-0.420390801753103,-118.879353927209,"CG","Os06g0627400","exon","Os06g0627400","Conserved hypothetical protein && - && -"]
[6,25343342,25343526,185,20,0.280926412695989,0.701317214449092,-0.420390801753103,-118.879353927209,"CG","6:25326960:25348868","CGI"]
[6,25588305,25588421,117,25,0.00700465627324936,0.189199533249705,-0.182194876976456,-148.473895278315,"CHH","6:25586253:25591908","CGI"]
[6,25639439,25639497,59,15,0.0107334879004579,0.106383003220393,-0.095649515319935,-81.783175844994,"CHH","6:25637866:25639867","CGI_shore"]
[6,25769450,25769635,186,25,0.216879759234378,0.421157022946665,-0.204277263712287,-135.163049368997,"CG","6:25767529:25769529","CGI_shore"]
[6,25769450,25769635,186,25,0.216879759234378,0.421157022946665,-0.204277263712287,-135.163049368997,"CG","Os06g0635500","promoter","Os06g0635500","Hypothetical conserved gene && - && PF14303:No apical meristem-associated C-terminal domain"]
[6,25769450,25769635,186,25,0.216879759234378,0.421157022946665,-0.204277263712287,-135.163049368997,"CG","6:25769530:25769977","CGI"]
[6,25772297,25772383,87,13,0.230830437539758,0.458711627638495,-0.227881190098737,-57.0621155008351,"CG","6:25771096:25773096","CGI_shore"]
[6,25909442,25909586,145,42,0.0230631770342126,0.208617739842518,-0.185554562808305,-209.05974252799,"CHH","6:25909448:25911448","CGI_shore"]
[6,25909442,25909586,145,42,0.0230631770342126,0.208617739842518,-0.185554562808305,-209.05974252799,"CHH","6:25898405:25910626","CGI"]
[6,26122566,26122713,148,35,0.0900655660490305,0.268924676851937,-0.178859110802907,-195.07632927693,"CHH","Os06g0641932","intron","Os06g0641932","Hypothetical protein && sp|A0A0N9HT29|C71BE_SINHE Desmethyl-deoxy-podophyllotoxin synthase OS=Sinopodophyllum hexandrum OX=93608 GN=CYP71BE54 PE=1 SV=1 && -"]
[6,26122566,26122713,148,35,0.0900655660490305,0.268924676851937,-0.178859110802907,-195.07632927693,"CHH","6:26045862:26124081","CGI"]
[6,26259508,26259624,117,12,0.264389068874284,0.719881270039776,-0.455492201165492,-73.7154841505355,"CG","Os06g0643900","promoter","PURPLE ACID PHOSPHATASE 26","Purple acid phosphatase (EC:3.1.3.2), Regulation of phosphate remobilization, Utilization of organic phosphoru && sp|Q93WP4|PEPP_ALLCE Phosphoenolpyruvate phosphatase OS=Allium cepa OX=4679 GN=ACPEPP PE=1 SV=1 && PF00149:Calcineurin-like phosphoesterase|PF14008:Iron/zinc purple acid phosphatase-like protein C|PF16656:Purple acid Phosphatase, N-terminal domain"]
[6,26259508,26259624,117,12,0.264389068874284,0.719881270039776,-0.455492201165492,-73.7154841505355,"CG","6:26259246:26261247","CGI_shore"]
[6,26286141,26286246,106,33,0.0139516906393281,0.162589971785109,-0.148638281145781,-149.876492126842,"CHH","6:26284217:26286217","CGI_shore"]
[6,26286141,26286246,106,33,0.0139516906393281,0.162589971785109,-0.148638281145781,-149.876492126842,"CHH","6:26286218:26287116","CGI"]
[6,26412115,26412247,133,10,0.385493177831467,0.710321772371494,-0.324828594540027,-56.2402448583562,"CG","Os06g0646600","intron","HOMEOBOX ORYZA SATIVA59","Similar to Homeobox protein knotted-1-like 11 && sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica OX=39947 GN=HOS59 PE=2 SV=2 && PF05920:Homeobox KN domain|PF03791:KNOX2 domain|PF03789:ELK domain|PF03790:KNOX1 domain"]
[6,26412115,26412247,133,10,0.385493177831467,0.710321772371494,-0.324828594540027,-56.2402448583562,"CG","Os06g0646600","exon","HOMEOBOX ORYZA SATIVA59","Similar to Homeobox protein knotted-1-like 11 && sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica OX=39947 GN=HOS59 PE=2 SV=2 && PF05920:Homeobox KN domain|PF03791:KNOX2 domain|PF03789:ELK domain|PF03790:KNOX1 domain"]
[6,26883990,26884105,116,22,0.0123837377839392,0.145614634464203,-0.133230896680263,-113.582920761016,"CHH","6:26882151:26884151","CGI_shore"]
[6,26960439,26960592,154,41,0.116451319215303,0.344506415684644,-0.228055096469341,-187.278783296231,"CHH","Os06g0656800","promoter","FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 25","FAS1 domain domain containing protein && sp|O22126|FLA8_ARATH Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1 && PF02469:Fasciclin domain"]
[6,26960439,26960592,154,41,0.116451319215303,0.344506415684644,-0.228055096469341,-187.278783296231,"CHH","6:26948225:26961345","CGI"]
[6,27235429,27235571,143,41,0.0600585858989574,0.153050128369886,-0.0929915424709289,-171.497107691835,"CHH","6:27234919:27236919","CGI_shore"]
[6,27235429,27235571,143,41,0.0600585858989574,0.153050128369886,-0.0929915424709289,-171.497107691835,"CHH","6:27235103:27237104","CGI_shore"]
[6,27270049,27270171,123,23,0.15865721442446,0.561725530549071,-0.403068316124612,-202.713590735876,"CG","6:27268482:27270482","CGI_shore"]
[6,27270049,27270171,123,23,0.15865721442446,0.561725530549071,-0.403068316124612,-202.713590735876,"CG","6:27269487:27271487","CGI_shore"]
[6,27270049,27270171,123,23,0.15865721442446,0.561725530549071,-0.403068316124612,-202.713590735876,"CG","6:27269490:27270146","CGI"]
[6,27270049,27270171,123,23,0.15865721442446,0.561725530549071,-0.403068316124612,-202.713590735876,"CG","Os06g0661700","promoter","Os06g0661700","Hypothetical conserved gene && sp|Q80XQ2|TBCD5_MOUSE TBC1 domain family member 5 OS=Mus musculus OX=10090 GN=Tbc1d5 PE=1 SV=2 && PF00566:Rab-GTPase-TBC domain"]
[6,27270049,27270171,123,23,0.15865721442446,0.561725530549071,-0.403068316124612,-202.713590735876,"CG","6:27270146:27272147","CGI_shore"]
[6,27270049,27270171,123,23,0.15865721442446,0.561725530549071,-0.403068316124612,-202.713590735876,"CG","Os06g0661766","promoter","Os06g0661766","Hypothetical conserved gene && - && -"]
[6,27842522,27842705,184,58,0.280798064448698,0.518684843989877,-0.237886779541179,-363.011928052271,"CHH","6:27840741:27842741","CGI_shore"]
[6,27842522,27842705,184,58,0.280798064448698,0.518684843989877,-0.237886779541179,-363.011928052271,"CHH","6:27841711:27843712","CGI_shore"]
[6,27896154,27896207,54,16,0.106834586878828,0.267508261594864,-0.160673674716035,-57.7372326900278,"CG","6:27894271:27896272","CGI_shore"]
[6,27896154,27896207,54,16,0.106834586878828,0.267508261594864,-0.160673674716035,-57.7372326900278,"CG","6:27895799:27896208","CGI"]
[6,28029062,28029176,115,13,0.440197033060038,0.668228860359094,-0.228031827299056,-51.5435495424841,"CG","6:28028149:28030149","CGI_shore"]
[6,28417941,28418084,144,68,0.0500178912196253,0.210916048505427,-0.160898157285802,-365.748311646578,"CHH","Os06g0681600","intron","class III peroxidase 89","Haem peroxidase family protein && sp|O23044|PER3_ARATH Peroxidase 3 OS=Arabidopsis thaliana OX=3702 GN=PER3 PE=2 SV=1 && PF00141:Peroxidase"]
[6,28417941,28418084,144,68,0.0500178912196253,0.210916048505427,-0.160898157285802,-365.748311646578,"CHH","6:28417322:28417960","CGI"]
[6,28417941,28418084,144,68,0.0500178912196253,0.210916048505427,-0.160898157285802,-365.748311646578,"CHH","6:28417960:28419961","CGI_shore"]
[6,28442446,28442538,93,24,0.0214771068550078,0.209347053213814,-0.187869946358806,-110.117760351985,"CHH","6:28442444:28444444","CGI_shore"]
[6,28725911,28726015,105,36,0.00657213485142907,0.0887101682555319,-0.0821380334041028,-201.545753000234,"CHH","Os06g0688400","promoter","F-box protein 323","F-box domain, cyclin-like domain containing protein && sp|Q9SAG4|FB93_ARATH F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 && -"]
[6,28725911,28726015,105,36,0.00657213485142907,0.0887101682555319,-0.0821380334041028,-201.545753000234,"CHH","6:28716565:28748149","CGI"]
[6,28735033,28735252,220,51,0.268663173564574,0.424594171752207,-0.155930998187633,-249.246441955778,"CHH","Os06g0688850","promoter","Os06g0688850","Similar to H0723C07.4 protein && - && -"]
[6,28735033,28735252,220,51,0.268663173564574,0.424594171752207,-0.155930998187633,-249.246441955778,"CHH","6:28716565:28748149","CGI"]
[6,28763303,28763365,63,7,0.511281234154555,0.783616083159199,-0.272334849004644,-28.8549964777426,"CHG","6:28761691:28763692","CGI_shore"]
[6,28763303,28763365,63,7,0.511281234154555,0.783616083159199,-0.272334849004644,-28.8549964777426,"CHG","6:28763228:28765228","CGI_shore"]
[6,28768086,28768172,87,14,0.167197689043789,0.419180600927309,-0.25198291188352,-80.3026129840552,"CHH","6:28766489:28768489","CGI_shore"]
[6,28768086,28768172,87,14,0.167197689043789,0.419180600927309,-0.25198291188352,-80.3026129840552,"CHH","Os06g0690100","promoter","OsSTA177","Similar to Pentatricopeptide repeat protein && - && -"]
[6,28784694,28784777,84,7,0.529728213037894,0.776851219261518,-0.247123006223623,-35.7172608804575,"CG","6:28783430:28784870","CGI"]
[6,28784694,28784777,84,7,0.529728213037894,0.776851219261518,-0.247123006223623,-35.7172608804575,"CG","6:28784466:28786466","CGI_shore"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","6:28786788:28788789","CGI_shore"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","Os06g0690600","TSS","Os06g0690600","Conserved hypothetical protein && - && -"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","Os06g0690600","utr5","Os06g0690600","Conserved hypothetical protein && - && -"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","Os06g0690600","exon","Os06g0690600","Conserved hypothetical protein && - && -"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","6:28787769:28788412","CGI"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","Os06g0690600","promoter","Os06g0690600","Conserved hypothetical protein && - && -"]
[6,28787713,28787848,136,57,0.0807251132332502,0.223712251374483,-0.142987138141233,-291.205339262067,"CHH","6:28785768:28787768","CGI_shore"]
[6,29090181,29090350,170,56,0.0217336658697173,0.271445132030703,-0.249711466160985,-498.605892946804,"CHH","6:29069558:29119691","CGI"]
[6,29145614,29145774,161,32,0.0155620751950897,0.23862831271613,-0.22306623752104,-171.934984598206,"CHH","Os06g0696600","intron","XYLOGLUCAN ENDOTRANSGLUCOSYDASE/HYDROLASE 12","Similar to Xyloglucan endo-transglycosylase homolog && sp|Q38907|XTH25_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana OX=3702 GN=XTH25 PE=2 SV=2 && PF00722:Glycosyl hydrolases family 16|PF06955:Xyloglucan endo-transglycosylase (XET) C-terminus"]
[6,29145614,29145774,161,32,0.0155620751950897,0.23862831271613,-0.22306623752104,-171.934984598206,"CHH","6:29144718:29150297","CGI"]
[6,29478068,29478211,144,8,0.168927004621805,0.516056869818872,-0.347129865197066,-42.908992122583,"CG","Os06g0700700","intron","HEAVY METAL ATPASE 2","Similar to P1B-type heavy metal transporting ATPase && sp|A3BF39|HMA2_ORYSJ Cadmium/zinc-transporting ATPase HMA2 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA2 PE=1 SV=1 && PF00702:haloacid dehalogenase-like hydrolase|PF00122:E1-E2 ATPase"]
[6,29478068,29478211,144,8,0.168927004621805,0.516056869818872,-0.347129865197066,-42.908992122583,"CG","Os06g0700700","utr3","HEAVY METAL ATPASE 2","Similar to P1B-type heavy metal transporting ATPase && sp|A3BF39|HMA2_ORYSJ Cadmium/zinc-transporting ATPase HMA2 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA2 PE=1 SV=1 && PF00702:haloacid dehalogenase-like hydrolase|PF00122:E1-E2 ATPase"]
[6,29478068,29478211,144,8,0.168927004621805,0.516056869818872,-0.347129865197066,-42.908992122583,"CG","Os06g0700700","exon","HEAVY METAL ATPASE 2","Similar to P1B-type heavy metal transporting ATPase && sp|A3BF39|HMA2_ORYSJ Cadmium/zinc-transporting ATPase HMA2 OS=Oryza sativa subsp. japonica OX=39947 GN=HMA2 PE=1 SV=1 && PF00702:haloacid dehalogenase-like hydrolase|PF00122:E1-E2 ATPase"]
[6,29738571,29738651,81,18,0.449307010685548,0.715145205487793,-0.265838194802244,-88.5737239121835,"CG","6:29737974:29739147","CGI"]
[6,29738571,29738651,81,18,0.449307010685548,0.715145205487793,-0.265838194802244,-88.5737239121835,"CG","Os06g0704200","promoter","Os06g0704200","Conserved hypothetical protein && - && -"]
[6,29738571,29738651,81,18,0.449307010685548,0.715145205487793,-0.265838194802244,-88.5737239121835,"CG","Os06g0704300","promoter","ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 46","CCCH-type zinc finger protein, Negative regulator of the brassinosteroid (BR) response, Control of rice architecture via BR signalin && sp|Q5Z807|C3H46_ORYSJ Zinc finger CCCH domain-containing protein 46 OS=Oryza sativa subsp. japonica OX=39947 GN=LIC PE=1 SV=1 && PF00642:Zinc finger C-x8-C-x5-C-x3-H type (and similar)"]
[6,29830231,29830338,108,17,0.0204192734791213,0.141857895034905,-0.121438621555784,-115.996464623995,"CHH","Os06g0706100","intron","Os06g0706100","Similar to Peptide transporter PTR2 && sp|P46032|PTR2_ARATH Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1 && PF00854:POT family"]
[6,29830231,29830338,108,17,0.0204192734791213,0.141857895034905,-0.121438621555784,-115.996464623995,"CHH","Os06g0706000","utr3","Os06g0706000","Hypothetical protein && sp|Q93Z20|PTR17_ARATH Protein NRT1/ PTR FAMILY 8.5 OS=Arabidopsis thaliana OX=3702 GN=NPF8.5 PE=2 SV=1 && PF00854:POT family"]
[6,29830231,29830338,108,17,0.0204192734791213,0.141857895034905,-0.121438621555784,-115.996464623995,"CHH","Os06g0706000","exon","Os06g0706000","Hypothetical protein && sp|Q93Z20|PTR17_ARATH Protein NRT1/ PTR FAMILY 8.5 OS=Arabidopsis thaliana OX=3702 GN=NPF8.5 PE=2 SV=1 && PF00854:POT family"]
[6,29830231,29830338,108,17,0.0204192734791213,0.141857895034905,-0.121438621555784,-115.996464623995,"CHH","Os06g0706100","exon","Os06g0706100","Similar to Peptide transporter PTR2 && sp|P46032|PTR2_ARATH Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1 && PF00854:POT family"]
[6,30134561,30134663,103,6,0.542927938842779,0.850346651897682,-0.307418713054903,-30.00526687009,"CG","6:30133766:30135766","CGI_shore"]
[6,30134561,30134663,103,6,0.542927938842779,0.850346651897682,-0.307418713054903,-30.00526687009,"CG","6:30134071:30136072","CGI_shore"]
[6,30134561,30134663,103,6,0.542927938842779,0.850346651897682,-0.307418713054903,-30.00526687009,"CG","Os06g0712400","promoter","Os06g0712400","Protein of unknown function DUF544 family protein && sp|Q76LS9|MINY1_MOUSE Ubiquitin carboxyl-terminal hydrolase MINDY-1 OS=Mus musculus OX=10090 GN=Mindy1 PE=1 SV=1 && PF04424:MINDY deubiquitinase"]
[6,30134561,30134663,103,6,0.542927938842779,0.850346651897682,-0.307418713054903,-30.00526687009,"CG","Os06g0712500","promoter","Os06g0712500","Similar to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) && sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana OX=3702 GN=GAUT1 PE=1 SV=1 && -"]
[6,30134561,30134663,103,6,0.542927938842779,0.850346651897682,-0.307418713054903,-30.00526687009,"CG","6:30134582:30136582","CGI_shore"]
[6,30134911,30134983,73,9,0.0949221730006094,0.260209748089362,-0.165287575088753,-50.9505895108854,"CG","6:30133766:30135766","CGI_shore"]
[6,30134911,30134983,73,9,0.0949221730006094,0.260209748089362,-0.165287575088753,-50.9505895108854,"CG","6:30134071:30136072","CGI_shore"]
[6,30134911,30134983,73,9,0.0949221730006094,0.260209748089362,-0.165287575088753,-50.9505895108854,"CG","Os06g0712400","promoter","Os06g0712400","Protein of unknown function DUF544 family protein && sp|Q76LS9|MINY1_MOUSE Ubiquitin carboxyl-terminal hydrolase MINDY-1 OS=Mus musculus OX=10090 GN=Mindy1 PE=1 SV=1 && PF04424:MINDY deubiquitinase"]
[6,30134911,30134983,73,9,0.0949221730006094,0.260209748089362,-0.165287575088753,-50.9505895108854,"CG","Os06g0712500","promoter","Os06g0712500","Similar to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) && sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana OX=3702 GN=GAUT1 PE=1 SV=1 && -"]
[6,30134911,30134983,73,9,0.0949221730006094,0.260209748089362,-0.165287575088753,-50.9505895108854,"CG","6:30134582:30136582","CGI_shore"]
[6,30585348,30585502,155,20,0.13335991679999,0.456612765216247,-0.323252848416256,-96.30956002907,"CHG","6:30585066:30585682","CGI"]
[6,30585467,30585533,67,19,0.503965542697013,0.753716313675061,-0.249750770978048,-71.816713192812,"CG","6:30585066:30585682","CGI"]
[6,30639692,30639760,69,20,0.0242498603322413,0.208797443842658,-0.184547583510416,-104.448977422963,"CHH","6:30630263:30640592","CGI"]
[6,30639737,30639793,57,11,0.447078342960609,0.759557806476274,-0.312479463515665,-53.0909826269903,"CG","6:30639774:30641774","CGI_shore"]
[6,30639737,30639793,57,11,0.447078342960609,0.759557806476274,-0.312479463515665,-53.0909826269903,"CG","6:30630263:30640592","CGI"]
[6,30856627,30856811,185,31,0.0055654457823073,0.104740622630588,-0.099175176848281,-207.908794379082,"CHH","6:30855235:30859392","CGI"]
[6,30856627,30856811,185,31,0.0055654457823073,0.104740622630588,-0.099175176848281,-207.908794379082,"CHH","Os06g0725550","intron","Os06g0725550","Hypothetical protein && - && PF03087:Arabidopsis protein of unknown function"]
[6,31091725,31091829,105,9,0.258612892082113,0.636517639577096,-0.377904747494983,-57.7130223055652,"CG","6:31090962:31092962","CGI_shore"]
[6,31091725,31091829,105,9,0.258612892082113,0.636517639577096,-0.377904747494983,-57.7130223055652,"CG","Os06g0729650","intron","Os06g0729650","Similar to Photosystem II stability/assembly factor HCF136, chloroplastic && sp|Q5Z5A8|P2SAF_ORYSJ Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=HCF136 PE=3 SV=1 && PF14870:Photosynthesis system II assembly factor YCF48"]
[6,31091725,31091829,105,9,0.258612892082113,0.636517639577096,-0.377904747494983,-57.7130223055652,"CG","Os06g0729650","exon","Os06g0729650","Similar to Photosystem II stability/assembly factor HCF136, chloroplastic && sp|Q5Z5A8|P2SAF_ORYSJ Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=HCF136 PE=3 SV=1 && PF14870:Photosynthesis system II assembly factor YCF48"]
[7,266015,266189,175,35,0.0262684105411461,0.24469534973569,-0.218426939194544,-221.40353521628,"CHH","Os07g0104750","intron","Os07g0104750","Similar to H0502G05.13 protein && sp|O23044|PER3_ARATH Peroxidase 3 OS=Arabidopsis thaliana OX=3702 GN=PER3 PE=2 SV=1 && PF00141:Peroxidase"]
[7,266015,266189,175,35,0.0262684105411461,0.24469534973569,-0.218426939194544,-221.40353521628,"CHH","7:264363:280053","CGI"]
[7,771856,771958,103,20,0.32938990086347,0.640194934670286,-0.310805033806816,-116.778103748533,"CHG","7:770674:772674","CGI_shore"]
[7,771856,771958,103,20,0.32938990086347,0.640194934670286,-0.310805033806816,-116.778103748533,"CHG","7:771721:771999","CGI"]
[7,822056,822177,122,30,0.379372628930576,0.617701756023988,-0.238329127093413,-154.651561709836,"CG","7:822054:822808","CGI"]
[7,871095,871160,66,21,0.760693181936704,0.88063415801144,-0.119940976074736,-75.2229801567431,"CG","Os07g0115800","promoter","Os07g0115800","Hypothetical conserved gene && - && PF12776:Myb/SANT-like DNA-binding domain"]
[7,871095,871160,66,21,0.760693181936704,0.88063415801144,-0.119940976074736,-75.2229801567431,"CG","7:865238:872769","CGI"]
[7,1062624,1062786,163,53,0.00579491793404829,0.0506468833661699,-0.0448519654321216,-288.083700058733,"CHH","7:1061629:1063629","CGI_shore"]
[7,1062624,1062786,163,53,0.00579491793404829,0.0506468833661699,-0.0448519654321216,-288.083700058733,"CHH","Os07g0119600","promoter","Os07g0119600","Conserved hypothetical protein && - && -"]
[7,1120922,1121151,230,69,0.0358818336157406,0.164349263296546,-0.128467429680806,-453.868796126566,"CHH","Os07g0121200","exon","Os07g0121200","Similar to LRR receptor-like kinase && sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana OX=3702 GN=At3g47110 PE=3 SV=1 && PF13855:Leucine rich repeat|PF00069:Protein kinase domain|PF08263:Leucine rich repeat N-terminal domain"]
[7,1120922,1121151,230,69,0.0358818336157406,0.164349263296546,-0.128467429680806,-453.868796126566,"CHH","7:1120592:1122592","CGI_shore"]
[7,1120922,1121151,230,69,0.0358818336157406,0.164349263296546,-0.128467429680806,-453.868796126566,"CHH","Os07g0121200","TSS","Os07g0121200","Similar to LRR receptor-like kinase && sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana OX=3702 GN=At3g47110 PE=3 SV=1 && PF13855:Leucine rich repeat|PF00069:Protein kinase domain|PF08263:Leucine rich repeat N-terminal domain"]
[7,1120922,1121151,230,69,0.0358818336157406,0.164349263296546,-0.128467429680806,-453.868796126566,"CHH","Os07g0121200","promoter","Os07g0121200","Similar to LRR receptor-like kinase && sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana OX=3702 GN=At3g47110 PE=3 SV=1 && PF13855:Leucine rich repeat|PF00069:Protein kinase domain|PF08263:Leucine rich repeat N-terminal domain"]
[7,1687306,1687407,102,10,0.247235310779549,0.511923699274615,-0.264688388495066,-53.5200994885534,"CHG","7:1686794:1688794","CGI_shore"]
[7,1687330,1687395,66,8,0.577341211747927,0.83979905802508,-0.262457846277154,-41.392703269573,"CG","7:1686794:1688794","CGI_shore"]
[7,1724315,1724420,106,7,0.19652389863755,0.472764673089833,-0.276240774452283,-39.8175633245268,"CHG","7:1722810:1724811","CGI_shore"]
[7,1724315,1724420,106,7,0.19652389863755,0.472764673089833,-0.276240774452283,-39.8175633245268,"CHG","Os07g0132800","promoter","Os07g0132800","Hypothetical gene && - && -"]
[7,1724315,1724420,106,7,0.19652389863755,0.472764673089833,-0.276240774452283,-39.8175633245268,"CHG","7:1724315:1725372","CGI"]
[7,1724316,1724371,56,7,0.346174650225274,0.692560095136215,-0.346385444910942,-43.5505646879616,"CG","7:1722810:1724811","CGI_shore"]
[7,1724316,1724371,56,7,0.346174650225274,0.692560095136215,-0.346385444910942,-43.5505646879616,"CG","Os07g0132800","promoter","Os07g0132800","Hypothetical gene && - && -"]
[7,1724316,1724371,56,7,0.346174650225274,0.692560095136215,-0.346385444910942,-43.5505646879616,"CG","7:1724315:1725372","CGI"]
[7,2072143,2072221,79,11,0.380079920561484,0.62699301097627,-0.246913090414787,-45.5073957307473,"CHG","7:2071419:2073420","CGI_shore"]
[7,2208614,2208774,161,9,0.348546994244404,0.632235666821174,-0.28368867257677,-47.1273674233022,"CG","7:2208043:2210044","CGI_shore"]
[7,2208614,2208774,161,9,0.348546994244404,0.632235666821174,-0.28368867257677,-47.1273674233022,"CG","Os07g0143200","exon","PIL14","Phytochrome-interacting bHLH factor, Cross-talk between light and stress signalin && sp|Q10CH5|PIL13_ORYSJ Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 OS=Oryza sativa subsp. japonica OX=39947 GN=PIL13 PE=1 SV=1 && -"]
[7,2208614,2208774,161,9,0.348546994244404,0.632235666821174,-0.28368867257677,-47.1273674233022,"CG","Os07g0143200","utr3","PIL14","Phytochrome-interacting bHLH factor, Cross-talk between light and stress signalin && sp|Q10CH5|PIL13_ORYSJ Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 OS=Oryza sativa subsp. japonica OX=39947 GN=PIL13 PE=1 SV=1 && -"]
[7,2358183,2358303,121,13,0.48112628126066,0.700588291534913,-0.219462010274252,-59.9534780051263,"CHG","7:2351842:2363033","CGI"]
[7,2400323,2400380,58,19,0.00962682366629485,0.105255859383795,-0.0956290357175002,-104.427470475231,"CHH","7:2400185:2400411","CGI"]
[7,2422547,2422656,110,27,0.568987575182712,0.813421624598109,-0.244434049415397,-117.232065261865,"CG","7:2421239:2422694","CGI"]
[7,2422547,2422656,110,27,0.568987575182712,0.813421624598109,-0.244434049415397,-117.232065261865,"CG","7:2421899:2423899","CGI_shore"]
[7,2713178,2713389,212,25,0.0150611552959962,0.241865133463293,-0.226803978167296,-173.344930016121,"CHH","7:2712775:2713219","CGI"]
[7,2713178,2713389,212,25,0.0150611552959962,0.241865133463293,-0.226803978167296,-173.344930016121,"CHH","7:2713219:2715220","CGI_shore"]
[7,2840113,2840231,119,28,0.0392199074335731,0.14426251941482,-0.105042611981247,-174.020672464668,"CHH","7:2839966:2841967","CGI_shore"]
[7,2840113,2840231,119,28,0.0392199074335731,0.14426251941482,-0.105042611981247,-174.020672464668,"CHH","Os07g0153600","promoter","PROSTRATE GROWTH 1","Zinc-finger nuclear transcription factor, Control of prostrate growth, prog1 variants identified in O. sativa disrupt the prog1 functio && sp|Q9FKA9|LATE_ARATH Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1 && -"]
[7,3724669,3724765,97,52,0.0334385108070911,0.0919218573034294,-0.0584833464963382,-202.853793931343,"CG","7:3722792:3724793","CGI_shore"]
[7,3724669,3724765,97,52,0.0334385108070911,0.0919218573034294,-0.0584833464963382,-202.853793931343,"CG","Os07g0170200","promoter","Os07g0170200","Similar to predicted protein && - && PF14279:HNH endonuclease"]
[7,3724669,3724765,97,52,0.0334385108070911,0.0919218573034294,-0.0584833464963382,-202.853793931343,"CG","7:3724478:3724868","CGI"]
[7,3918109,3918208,100,23,0.573865488597019,0.845245052387435,-0.271379563790417,-111.994601648069,"CG","Os07g0174700","promoter","Os07g0174700","Conserved hypothetical protein && - && -"]
[7,3918109,3918208,100,23,0.573865488597019,0.845245052387435,-0.271379563790417,-111.994601648069,"CG","7:3913457:3918324","CGI"]
[7,3928550,3928720,171,37,0.00909110280749047,0.0721966462423072,-0.0631055434348167,-184.556791634485,"CHH","7:3927007:3929008","CGI_shore"]
[7,3928550,3928720,171,37,0.00909110280749047,0.0721966462423072,-0.0631055434348167,-184.556791634485,"CHH","7:3927359:3929359","CGI_shore"]
[7,3929110,3929174,65,20,0.0470908343997325,0.153124859183,-0.106034024783268,-100.184965343864,"CHH","7:3927359:3929359","CGI_shore"]
[7,3929685,3929787,103,25,0.137737887867269,0.375350396956183,-0.237612509088914,-188.036679189413,"CHH","7:3929328:3931328","CGI_shore"]
[7,3929685,3929787,103,25,0.137737887867269,0.375350396956183,-0.237612509088914,-188.036679189413,"CHH","7:3929679:3931680","CGI_shore"]
[7,3978140,3978275,136,30,0.0281643254284376,0.178834032606282,-0.150669707177845,-166.139938184569,"CHH","7:3976605:3978606","CGI_shore"]
[7,3978140,3978275,136,30,0.0281643254284376,0.178834032606282,-0.150669707177845,-166.139938184569,"CHH","Os07g0175600","promoter","GPI-anchored non-specific lipid transfer protein 18, type G nsLTP 18, type G non-specific lipid transfer protein 18","Plant lipid transfer protein and hydrophobic protein, helical domain containing protein && sp|Q9LJ86|LTPG5_ARATH Non-specific lipid transfer protein GPI-anchored 5 OS=Arabidopsis thaliana OX=3702 GN=LTPG5 PE=2 SV=1 && PF14368:Probable lipid transfer"]
[7,4361169,4361371,203,25,0.265038922635757,0.562575644722631,-0.297536722086874,-151.365782402184,"CHG","7:4359812:4362952","CGI"]
[7,4666427,4666604,178,24,0.516435812569529,0.753592351940632,-0.237156539371103,-122.684222463915,"CG","7:4664820:4666820","CGI_shore"]
[7,4666427,4666604,178,24,0.516435812569529,0.753592351940632,-0.237156539371103,-122.684222463915,"CG","Os07g0187400","exon","Os07g0187400","ATPase, AAA-type, core domain containing protein && sp|F4J3R7|SPD1_ARATH Protein SEEDLING PLASTID DEVELOPMENT 1 OS=Arabidopsis thaliana OX=3702 GN=SPD1 PE=2 SV=1 && PF00004:ATPase family associated with various cellular activities (AAA)"]
[7,4666427,4666604,178,24,0.516435812569529,0.753592351940632,-0.237156539371103,-122.684222463915,"CG","Os07g0187400","intron","Os07g0187400","ATPase, AAA-type, core domain containing protein && sp|F4J3R7|SPD1_ARATH Protein SEEDLING PLASTID DEVELOPMENT 1 OS=Arabidopsis thaliana OX=3702 GN=SPD1 PE=2 SV=1 && PF00004:ATPase family associated with various cellular activities (AAA)"]
[7,4731496,4731565,70,13,0.0356710192596733,0.209839636092637,-0.174168616832964,-52.2234925695514,"CG","7:4729843:4731843","CGI_shore"]
[7,4731496,4731565,70,13,0.0356710192596733,0.209839636092637,-0.174168616832964,-52.2234925695514,"CG","7:4730282:4732283","CGI_shore"]
[7,4731496,4731565,70,13,0.0356710192596733,0.209839636092637,-0.174168616832964,-52.2234925695514,"CG","7:4730498:4732498","CGI_shore"]
[7,4731496,4731565,70,13,0.0356710192596733,0.209839636092637,-0.174168616832964,-52.2234925695514,"CG","Os07g0188700","exon","Os07g0188700","Similar to EXO && sp|Q9FFN2|GLYT3_ARATH Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana OX=3702 GN=At5g03795 PE=3 SV=2 && PF03016:Exostosin family"]
[7,4801133,4801320,188,15,0.235813010478769,0.719131104110719,-0.483318093631949,-103.414590530565,"CG","7:4801222:4801588","CGI"]
[7,4801133,4801320,188,15,0.235813010478769,0.719131104110719,-0.483318093631949,-103.414590530565,"CG","7:4799221:4801221","CGI_shore"]
[7,5305191,5305251,61,12,0.197175367146309,0.485355098812769,-0.28817973166646,-52.7145467943255,"CHG","7:5303788:5307840","CGI"]
[7,5718340,5718416,77,10,0.199928282822913,0.610292749904602,-0.410364467081689,-58.9004381096352,"CHG","7:5718196:5718460","CGI"]
[7,5786628,5786723,96,35,0.0693531106796505,0.169101002453035,-0.099747891773385,-161.613605739167,"CHH","Os07g0207400","promoter","Os07g0207400","Similar to RF12 protein (Fragment) && sp|P49688|RS23_ARATH 40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2 && PF03719:Ribosomal protein S5, C-terminal domain|PF00333:Ribosomal protein S5, N-terminal domain"]
[7,5786628,5786723,96,35,0.0693531106796505,0.169101002453035,-0.099747891773385,-161.613605739167,"CHH","7:5780574:5787881","CGI"]
[7,5945407,5945532,126,36,0.295504698954678,0.452948627586571,-0.157443928631893,-181.164675490345,"CG","7:5943355:5945643","CGI"]
[7,5945407,5945532,126,36,0.295504698954678,0.452948627586571,-0.157443928631893,-181.164675490345,"CG","Os07g0209600","promoter","Os07g0209600","Similar to Zinc finger transcription factor ZF1 && sp|Q42430|ZFP1_WHEAT Zinc finger protein 1 OS=Triticum aestivum OX=4565 PE=2 SV=1 && PF13912:C2H2-type zinc finger"]
[7,5945407,5945532,126,36,0.295504698954678,0.452948627586571,-0.157443928631893,-181.164675490345,"CG","7:5944985:5946985","CGI_shore"]
[7,5945407,5945532,126,36,0.295504698954678,0.452948627586571,-0.157443928631893,-181.164675490345,"CG","Os07g0209700","exon","Os07g0209700","Protein of unknown function DUF1677, Oryza sativa domain containing protein && - && PF07893:Protein of unknown function (DUF1668)"]
[7,6206148,6206262,115,15,0.129261026965979,0.624698678964697,-0.495437651998717,-96.0241977338701,"CHG","7:6205334:6207335","CGI_shore"]
[7,6382225,6382365,141,37,0.00756680460486484,0.138888242511876,-0.131321437907011,-239.760427228508,"CHH","7:6380411:6382411","CGI_shore"]
[7,6382225,6382365,141,37,0.00756680460486484,0.138888242511876,-0.131321437907011,-239.760427228508,"CHH","7:6380942:6382943","CGI_shore"]
[7,7555147,7555235,89,28,0.0210850072985695,0.107770697775149,-0.0866856904765793,-158.010197747978,"CHH","7:7553675:7555676","CGI_shore"]
[7,7737916,7737969,54,6,0.291927717152623,0.529878046784004,-0.237950329631381,-29.430988125691,"CHG","7:7736194:7738195","CGI_shore"]
[7,7737916,7737969,54,6,0.291927717152623,0.529878046784004,-0.237950329631381,-29.430988125691,"CHG","7:7736816:7738066","CGI"]
[7,8117753,8117893,141,23,0.448739997206409,0.665095778637242,-0.216355781430833,-106.553201864131,"CHG","7:8116701:8118702","CGI_shore"]
[7,8117753,8117893,141,23,0.448739997206409,0.665095778637242,-0.216355781430833,-106.553201864131,"CHG","7:8117410:8117971","CGI"]
[7,8208064,8208138,75,7,0.318637433932846,0.614902777563549,-0.296265343630703,-33.3708805657473,"CHG","7:8207618:8224085","CGI"]
[7,8261838,8261913,76,9,0.137512375449668,0.497696293126378,-0.36018391767671,-41.3603420929994,"CHG","7:8259911:8261912","CGI_shore"]
[7,8351502,8351612,111,11,0.490214089644698,0.729585577093927,-0.239371487449229,-47.0418587852591,"CHG","7:8347088:8352610","CGI"]
[7,8351502,8351612,111,11,0.490214089644698,0.729585577093927,-0.239371487449229,-47.0418587852591,"CHG","Os07g0250100","promoter","Os07g0250100","Similar to cytokinin-O-glucosyltransferase 2 && sp|U5NH37|7DLGT_CATRO 7-deoxyloganetic acid glucosyl transferase OS=Catharanthus roseus OX=4058 GN=7DLGT PE=1 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[7,8351502,8351612,111,11,0.490214089644698,0.729585577093927,-0.239371487449229,-47.0418587852591,"CHG","Os07g0250300","promoter","Os07g0250300","Conserved hypothetical protein && - && -"]
[7,9447919,9447977,59,4,0.238334533416734,0.558936104754869,-0.320601571338135,-25.0341099794775,"CHG","7:9447724:9449725","CGI_shore"]
[7,9521458,9521578,121,28,0.00672699035918792,0.113776986236269,-0.107049995877081,-152.184060996555,"CHH","7:9520334:9522335","CGI_shore"]
[7,9521458,9521578,121,28,0.00672699035918792,0.113776986236269,-0.107049995877081,-152.184060996555,"CHH","7:9520677:9522677","CGI_shore"]
[7,9924049,9924128,80,12,0.173105031308556,0.407968571922572,-0.234863540614016,-60.4243641609848,"CHG","7:9922949:9924271","CGI"]
[7,9933574,9933674,101,19,0.506169756644036,0.848383937942717,-0.342214181298681,-86.0513560296077,"CG","7:9932753:9934754","CGI_shore"]
[7,9933578,9933718,141,33,0.0487804921369188,0.273658392517338,-0.224877900380419,-166.223447135157,"CHH","7:9932753:9934754","CGI_shore"]
[7,9939652,9939710,59,25,0.0108267270093945,0.0613458974839307,-0.0505191704745362,-131.379053202395,"CHH","7:9938268:9940268","CGI_shore"]
[7,10120571,10120759,189,51,0.163147406072492,0.65479916895974,-0.491651762887248,-410.6481491213,"CG","7:10120570:10121513","CGI"]
[7,10349650,10349731,82,17,0.138394448660643,0.661506050036555,-0.523111601375913,-120.114269471225,"CHG","7:10347928:10349928","CGI_shore"]
[7,10349650,10349731,82,17,0.138394448660643,0.661506050036555,-0.523111601375913,-120.114269471225,"CHG","7:10349178:10349786","CGI"]
[7,10495210,10495483,274,58,0.145362542592715,0.439050362916573,-0.293687820323858,-418.006848778298,"CG","7:10487062:10495613","CGI"]
[7,10495223,10495373,151,18,0.0494342407723868,0.290383635699704,-0.240949394927317,-90.8798365026128,"CHG","7:10487062:10495613","CGI"]
[7,11030556,11030624,69,8,0.122673755818852,0.417596549215381,-0.294922793396529,-36.1260295524296,"CG","7:11029654:11030562","CGI"]
[7,11030556,11030624,69,8,0.122673755818852,0.417596549215381,-0.294922793396529,-36.1260295524296,"CG","7:11030562:11032563","CGI_shore"]
[7,11427169,11427238,70,21,0.696979159499198,0.832190465684443,-0.135211306185244,-76.0916611122188,"CG","7:11426846:11427426","CGI"]
[7,11474396,11474505,110,26,0.136523329303482,0.28490372543468,-0.148380396131198,-146.769666376274,"CG","7:11468076:11475354","CGI"]
[7,11574827,11574930,104,14,0.362796167052998,0.611947985068516,-0.249151818015518,-63.9424494442188,"CHG","Os07g0296000","promoter","Os07g0296000","Conserved hypothetical protein && - && -"]
[7,11574827,11574930,104,14,0.362796167052998,0.611947985068516,-0.249151818015518,-63.9424494442188,"CHG","7:11573803:11575803","CGI_shore"]
[7,11574827,11574930,104,14,0.362796167052998,0.611947985068516,-0.249151818015518,-63.9424494442188,"CHG","7:11573818:11575819","CGI_shore"]
[7,11574827,11574930,104,14,0.362796167052998,0.611947985068516,-0.249151818015518,-63.9424494442188,"CHG","7:11574704:11575442","CGI"]
[7,11609020,11609086,67,5,0.619735788761019,0.761007811108853,-0.141272022347834,-24.61731408057,"CHG","7:11608404:11610405","CGI_shore"]
[7,11609020,11609086,67,5,0.619735788761019,0.761007811108853,-0.141272022347834,-24.61731408057,"CHG","7:11608953:11610953","CGI_shore"]
[7,11629365,11629673,309,82,0.241671607253135,0.430430251726181,-0.188758644473046,-458.811449721051,"CG","7:11627417:11629691","CGI"]
[7,11629365,11629673,309,82,0.241671607253135,0.430430251726181,-0.188758644473046,-458.811449721051,"CG","7:11628150:11630150","CGI_shore"]
[7,11629365,11629673,309,82,0.241671607253135,0.430430251726181,-0.188758644473046,-458.811449721051,"CG","Os07g0297200","utr3","Os07g0297200","Hypothetical protein && - && -"]
[7,11629365,11629673,309,82,0.241671607253135,0.430430251726181,-0.188758644473046,-458.811449721051,"CG","Os07g0297200","exon","Os07g0297200","Hypothetical protein && - && -"]
[7,11864706,11864812,107,34,0.39346893889272,0.710183841996419,-0.316714903103699,-178.680366497722,"CG","7:11864095:11864813","CGI"]
[7,12052909,12053114,206,12,0.0297164923630436,0.518416676868879,-0.488700184505835,-83.2431122568196,"CHG","7:12052623:12054624","CGI_shore"]
[7,12347459,12347523,65,10,0.251105672764853,0.633845803910025,-0.382740131145172,-49.4398756523904,"CHG","7:12346359:12348359","CGI_shore"]
[7,12347459,12347523,65,10,0.251105672764853,0.633845803910025,-0.382740131145172,-49.4398756523904,"CHG","7:12347399:12347681","CGI"]
[7,12658165,12658257,93,19,0.0235185407000573,0.200889719092565,-0.177371178392508,-109.429758904841,"CHH","7:12656412:12658413","CGI_shore"]
[7,12658165,12658257,93,19,0.0235185407000573,0.200889719092565,-0.177371178392508,-109.429758904841,"CHH","Os07g0407700","promoter","Os07g0407700","Hypothetical conserved gene && - && -"]
[7,12658165,12658257,93,19,0.0235185407000573,0.200889719092565,-0.177371178392508,-109.429758904841,"CHH","7:12656497:12658497","CGI_shore"]
[7,12658165,12658257,93,19,0.0235185407000573,0.200889719092565,-0.177371178392508,-109.429758904841,"CHH","7:12657794:12659795","CGI_shore"]
[7,12664386,12664551,166,33,0.626092541353717,0.816574081241344,-0.190481539887627,-164.745636110277,"CG","7:12663902:12664652","CGI"]
[7,12664386,12664551,166,33,0.626092541353717,0.816574081241344,-0.190481539887627,-164.745636110277,"CG","Os07g0407900","promoter","Os07g0407900","Protein of unknown function DUF679 family protein && sp|Q9M897|DMP5_ARATH Protein DMP5 OS=Arabidopsis thaliana OX=3702 GN=DMP5 PE=2 SV=1 && PF05078:Protein of unknown function (DUF679)"]
[7,12664386,12664551,166,33,0.626092541353717,0.816574081241344,-0.190481539887627,-164.745636110277,"CG","7:12663282:12665282","CGI_shore"]
[7,12664404,12664557,154,28,0.355870714470283,0.613453543285534,-0.257582828815251,-152.888652689145,"CHG","7:12663902:12664652","CGI"]
[7,12664404,12664557,154,28,0.355870714470283,0.613453543285534,-0.257582828815251,-152.888652689145,"CHG","Os07g0407900","promoter","Os07g0407900","Protein of unknown function DUF679 family protein && sp|Q9M897|DMP5_ARATH Protein DMP5 OS=Arabidopsis thaliana OX=3702 GN=DMP5 PE=2 SV=1 && PF05078:Protein of unknown function (DUF679)"]
[7,12664404,12664557,154,28,0.355870714470283,0.613453543285534,-0.257582828815251,-152.888652689145,"CHG","7:12663282:12665282","CGI_shore"]
[7,12839107,12839230,124,7,0.0431872260331197,0.223696978678496,-0.180509752645377,-35.3972443017738,"CHG","7:12838982:12839856","CGI"]
[7,12839151,12839332,182,28,0.111524061211032,0.370290763059431,-0.258766701848399,-214.476616856567,"CG","7:12838982:12839856","CGI"]
[7,12858213,12858356,144,10,0.386117471697665,0.81280669084284,-0.426689219145175,-61.185669567707,"CG","7:12856595:12858595","CGI_shore"]
[7,12861580,12861702,123,32,0.0377813111120739,0.145285053718998,-0.107503742606924,-164.711408795523,"CHH","7:12860126:12862126","CGI_shore"]
[7,13194517,13194655,139,47,0.607549923019632,0.855132197094385,-0.247582274074753,-246.838797577865,"CG","7:13194022:13194689","CGI"]
[7,13194517,13194655,139,47,0.607549923019632,0.855132197094385,-0.247582274074753,-246.838797577865,"CG","7:13194441:13196441","CGI_shore"]
[7,13266718,13266890,173,30,0.55582223395415,0.847909168005617,-0.292086934051467,-126.95021603908,"CG","7:13266252:13268253","CGI_shore"]
[7,13266718,13266890,173,30,0.55582223395415,0.847909168005617,-0.292086934051467,-126.95021603908,"CG","7:13266717:13267141","CGI"]
[7,13437514,13437660,147,16,0.656602808111946,0.872802163459419,-0.216199355347473,-97.136917095948,"CG","Os07g0419800","exon","Os07g0419800","Hypothetical conserved gene && - && PF07800:Protein of unknown function (DUF1644)"]
[7,13437514,13437660,147,16,0.656602808111946,0.872802163459419,-0.216199355347473,-97.136917095948,"CG","7:13437596:13439596","CGI_shore"]
[7,13469754,13469820,67,17,0.673380987730593,0.861234999812423,-0.18785401208183,-88.3519440450975,"CG","7:13450836:13471908","CGI"]
[7,13778410,13778632,223,16,0.5132497012865,0.80963416631341,-0.296384465026911,-101.852395860421,"CG","7:13777779:13779779","CGI_shore"]
[7,13778410,13778632,223,16,0.5132497012865,0.80963416631341,-0.296384465026911,-101.852395860421,"CG","Os07g0425000","promoter","Os07g0425000","Biopterin transport-related protein BT1 family protein && sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g33280 PE=3 SV=2 && PF03092:BT1 family"]
[7,13781790,13781886,97,29,0.728068324046342,0.877177580225119,-0.149109256178777,-144.843542739778,"CG","7:13779780:13789034","CGI"]
[7,14722617,14722744,128,12,0.428408820640927,0.771658421837326,-0.343249601196399,-63.2391647839045,"CG","Os07g0438500","promoter","Os07g0438500","Octicosapeptide/Phox/Bem1p domain containing protein && - && -"]
[7,14722617,14722744,128,12,0.428408820640927,0.771658421837326,-0.343249601196399,-63.2391647839045,"CG","7:14721162:14723162","CGI_shore"]
[7,15139293,15139364,72,12,0.464297061468886,0.642887660623461,-0.178590599154575,-45.3784961317241,"CHG","7:15139208:15141208","CGI_shore"]
[7,15139293,15139364,72,12,0.464297061468886,0.642887660623461,-0.178590599154575,-45.3784961317241,"CHG","7:15139293:15139695","CGI"]
[7,15943512,15943659,148,13,0.071678626284715,0.534973238579681,-0.463294612294966,-80.6884092574666,"CHG","7:15943161:15945162","CGI_shore"]
[7,15943512,15943659,148,13,0.071678626284715,0.534973238579681,-0.463294612294966,-80.6884092574666,"CHG","Target=(CATG)n:1-85;Class=Simple_repeat","repeat"]
[7,15943535,15943636,102,6,0.100153753943442,0.641535344992192,-0.54138159104875,-32.6560558278176,"CG","7:15943161:15945162","CGI_shore"]
[7,15943535,15943636,102,6,0.100153753943442,0.641535344992192,-0.54138159104875,-32.6560558278176,"CG","Target=(CATG)n:1-85;Class=Simple_repeat","repeat"]
[7,16628643,16629027,385,12,0.593778401679208,0.874059240056522,-0.280280838377314,-73.705387714053,"CG","Os07g0467600","exon","Os07g0467600","Similar to Plus agglutinin && - && PF09335:SNARE associated Golgi protein"]
[7,16628643,16629027,385,12,0.593778401679208,0.874059240056522,-0.280280838377314,-73.705387714053,"CG","7:16628358:16630358","CGI_shore"]
[7,16628643,16629027,385,12,0.593778401679208,0.874059240056522,-0.280280838377314,-73.705387714053,"CG","Os07g0467600","promoter","Os07g0467600","Similar to Plus agglutinin && - && PF09335:SNARE associated Golgi protein"]
[7,16628643,16629027,385,12,0.593778401679208,0.874059240056522,-0.280280838377314,-73.705387714053,"CG","Os07g0467600","intron","Os07g0467600","Similar to Plus agglutinin && - && PF09335:SNARE associated Golgi protein"]
[7,16629097,16629268,172,11,0.310551844931462,0.608125762286205,-0.297573917354743,-58.4644494311779,"CG","7:16628358:16630358","CGI_shore"]
[7,16629097,16629268,172,11,0.310551844931462,0.608125762286205,-0.297573917354743,-58.4644494311779,"CG","Os07g0467600","promoter","Os07g0467600","Similar to Plus agglutinin && - && PF09335:SNARE associated Golgi protein"]
[7,16629097,16629268,172,11,0.310551844931462,0.608125762286205,-0.297573917354743,-58.4644494311779,"CG","Os07g0467600","intron","Os07g0467600","Similar to Plus agglutinin && - && PF09335:SNARE associated Golgi protein"]
[7,17079442,17079504,63,4,0.125690715042158,0.511476571863368,-0.38578585682121,-17.9260719862418,"CHG","7:17078341:17080341","CGI_shore"]
[7,17300694,17300753,60,25,0.075476524143535,0.152271226048191,-0.0767947019046563,-96.4495614583695,"CHH","7:17300450:17302451","CGI_shore"]
[7,17400950,17401101,152,35,0.415498394221117,0.602450985893818,-0.1869525916727,-176.458054424746,"CG","7:17400325:17402326","CGI_shore"]
[7,17400950,17401101,152,35,0.415498394221117,0.602450985893818,-0.1869525916727,-176.458054424746,"CG","Os07g0479100","exon","RING finger protein OsRFPH2-17, RING-H2 protein 17","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 && PF13639:Ring finger domain"]
[7,17400950,17401101,152,35,0.415498394221117,0.602450985893818,-0.1869525916727,-176.458054424746,"CG","7:17399173:17401174","CGI_shore"]
[7,17401505,17401562,58,10,0.498951273902972,0.792599542006344,-0.293648268103372,-57.194898172123,"CG","7:17400325:17402326","CGI_shore"]
[7,17401505,17401562,58,10,0.498951273902972,0.792599542006344,-0.293648268103372,-57.194898172123,"CG","Os07g0479100","exon","RING finger protein OsRFPH2-17, RING-H2 protein 17","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 && PF13639:Ring finger domain"]
[7,17401505,17401562,58,10,0.498951273902972,0.792599542006344,-0.293648268103372,-57.194898172123,"CG","Os07g0479100","intron","RING finger protein OsRFPH2-17, RING-H2 protein 17","Zinc finger, RING/FYVE/PHD-type domain containing protein && sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1 && PF13639:Ring finger domain"]
[7,17859132,17859238,107,29,0.686206495351109,0.837739595585694,-0.151533100234585,-110.745520525421,"CG","7:17853281:17861590","CGI"]
[7,18504018,18504080,63,7,0.669134228533434,0.875213367899767,-0.206079139366333,-31.4202711242745,"CG","Os07g0494900","exon","Os07g0494900","Conserved hypothetical protein && - && PF15982:N-terminal cysteine-rich region of Transmembrane protein 135"]
[7,18571687,18571828,142,57,0.0165675115013887,0.120602246924507,-0.104034735423118,-269.811007462912,"CHH","7:18570828:18571716","CGI"]
[7,18571687,18571828,142,57,0.0165675115013887,0.120602246924507,-0.104034735423118,-269.811007462912,"CHH","7:18571716:18573717","CGI_shore"]
[7,18761470,18761571,102,35,0.747170207741943,0.858546317293263,-0.11137610955132,-139.637572937819,"CG","Os07g0499300","promoter","Os07g0499300","Similar to predicted protein && sp|Q9LZA6|SDP1_ARATH Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana OX=3702 GN=SDP1 PE=1 SV=1 && -"]
[7,18761470,18761571,102,35,0.747170207741943,0.858546317293263,-0.11137610955132,-139.637572937819,"CG","Os07g0499300","exon","Os07g0499300","Similar to predicted protein && sp|Q9LZA6|SDP1_ARATH Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana OX=3702 GN=SDP1 PE=1 SV=1 && -"]
[7,18761470,18761571,102,35,0.747170207741943,0.858546317293263,-0.11137610955132,-139.637572937819,"CG","7:18761354:18761926","CGI"]
[7,18991921,18992052,132,37,0.0606591568213293,0.230348487255557,-0.169689330434228,-217.651087446224,"CHH","7:18990149:18995650","CGI"]
[7,19005321,19005385,65,11,0.0203752689588545,0.132970003745075,-0.11259473478622,-69.6937443302635,"CHH","7:19001998:19009598","CGI"]
[7,19067174,19067248,75,17,0.477505600360429,0.829129239240737,-0.351623638880307,-78.9094260019778,"CG","7:19058102:19069636","CGI"]
[7,19067174,19067248,75,17,0.477505600360429,0.829129239240737,-0.351623638880307,-78.9094260019778,"CG","Os07g0504200","promoter","Os07g0504200","Hypothetical conserved gene && sp|Q9LIA6|PBRP2_ARATH Plant-specific TFIIB-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=PBRP2 PE=2 SV=1 && PF00382:Transcription factor TFIIB repeat"]
[7,19090929,19091046,118,37,0.0396725134903629,0.191863762836685,-0.152191249346322,-232.496504451956,"CHH","7:19083305:19092117","CGI"]
[7,19182014,19182208,195,21,0.495975628845211,0.738257512744735,-0.242281883899525,-107.909334026408,"CG","7:19181310:19183311","CGI_shore"]
[7,19182014,19182208,195,21,0.495975628845211,0.738257512744735,-0.242281883899525,-107.909334026408,"CG","7:19181967:19183967","CGI_shore"]
[7,19423540,19423613,74,7,0.338872050520293,0.737164052084551,-0.398292001564258,-36.7399559728933,"CHG","7:19421205:19424022","CGI"]
[7,19772759,19772837,79,11,0.408757062172087,0.62670949815973,-0.217952435987643,-53.3551368329799,"CG","7:19771941:19773941","CGI_shore"]
[7,19772759,19772837,79,11,0.408757062172087,0.62670949815973,-0.217952435987643,-53.3551368329799,"CG","Os07g0515100","exon","CALCIUM-DEPENDENT PROTEIN KINASE 19","Calcium-dependent protein kinase, isoform 2 (EC 2.7.1.-) (CDPK 2) && sp|P53683|CDPKJ_ORYSJ Calcium-dependent protein kinase 19 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK19 PE=2 SV=2 && PF00069:Protein kinase domain|PF13499:EF-hand domain pair"]
[7,19772759,19772837,79,11,0.408757062172087,0.62670949815973,-0.217952435987643,-53.3551368329799,"CG","Os07g0515150","exon","Os07g0515150","Hypothetical protein && sp|P53683|CDPKJ_ORYSJ Calcium-dependent protein kinase 19 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK19 PE=2 SV=2 && -"]
[7,19772759,19772837,79,11,0.408757062172087,0.62670949815973,-0.217952435987643,-53.3551368329799,"CG","Os07g0515150","utr3","Os07g0515150","Hypothetical protein && sp|P53683|CDPKJ_ORYSJ Calcium-dependent protein kinase 19 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK19 PE=2 SV=2 && -"]
[7,19772759,19772837,79,11,0.408757062172087,0.62670949815973,-0.217952435987643,-53.3551368329799,"CG","Os07g0515150","TES","Os07g0515150","Hypothetical protein && sp|P53683|CDPKJ_ORYSJ Calcium-dependent protein kinase 19 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK19 PE=2 SV=2 && -"]
[7,19909531,19909581,51,19,0.103923218193941,0.182373010023728,-0.0784497918297868,-78.3558378528592,"CG","Os07g0516500","exon","Os07g0516500","Conserved hypothetical protein && - && PF13963:Transposase-associated domain"]
[7,19909531,19909581,51,19,0.103923218193941,0.182373010023728,-0.0784497918297868,-78.3558378528592,"CG","Os07g0516500","promoter","Os07g0516500","Conserved hypothetical protein && - && PF13963:Transposase-associated domain"]
[7,19909531,19909581,51,19,0.103923218193941,0.182373010023728,-0.0784497918297868,-78.3558378528592,"CG","Os07g0516500","utr5","Os07g0516500","Conserved hypothetical protein && - && PF13963:Transposase-associated domain"]
[7,19909531,19909581,51,19,0.103923218193941,0.182373010023728,-0.0784497918297868,-78.3558378528592,"CG","7:19909264:19909652","CGI"]
[7,19909531,19909581,51,19,0.103923218193941,0.182373010023728,-0.0784497918297868,-78.3558378528592,"CG","7:19909348:19911348","CGI_shore"]
[7,19909531,19909581,51,19,0.103923218193941,0.182373010023728,-0.0784497918297868,-78.3558378528592,"CG","Os07g0516600","promoter","Os07g0516600","Multi antimicrobial extrusion protein MatE family protein && sp|Q9LVD9|DTX40_ARATH Protein DETOXIFICATION 40 OS=Arabidopsis thaliana OX=3702 GN=DTX40 PE=1 SV=1 && PF01554:MatE"]
[7,20059354,20059458,105,34,0.555126549489209,0.844539805183591,-0.289413255694381,-185.790485900561,"CG","7:20055596:20060101","CGI"]
[7,20059354,20059458,105,34,0.555126549489209,0.844539805183591,-0.289413255694381,-185.790485900561,"CG","Os07g0519450","intron","Os07g0519450","Similar to MYB transcription factor && - && -"]
[7,20143167,20143221,55,22,0.0122310566139613,0.0578885545970928,-0.0456574979831314,-160.323605435379,"CHH","7:20142158:20144159","CGI_shore"]
[7,20143167,20143221,55,22,0.0122310566139613,0.0578885545970928,-0.0456574979831314,-160.323605435379,"CHH","7:20142873:20144874","CGI_shore"]
[7,20195672,20195811,140,46,0.14809451211769,0.364317863767863,-0.216223351650172,-217.040884654716,"CG","7:20194304:20198945","CGI"]
[7,20198674,20198945,272,70,0.481576687885608,0.82955861192135,-0.347981924035742,-365.159117194247,"CG","7:20194304:20198945","CGI"]
[7,20484057,20484183,127,32,0.0678241720650693,0.227842864814913,-0.160018692749843,-148.43065782366,"CHH","7:20482454:20484455","CGI_shore"]
[7,20484057,20484183,127,32,0.0678241720650693,0.227842864814913,-0.160018692749843,-148.43065782366,"CHH","7:20482803:20484803","CGI_shore"]
[7,20484057,20484183,127,32,0.0678241720650693,0.227842864814913,-0.160018692749843,-148.43065782366,"CHH","7:20483765:20485766","CGI_shore"]
[7,20593487,20593537,51,14,0.05759391727316,0.116458011284982,-0.0588640940118223,-75.1857355198192,"CHH","7:20591809:20593810","CGI_shore"]
[7,20593487,20593537,51,14,0.05759391727316,0.116458011284982,-0.0588640940118223,-75.1857355198192,"CHH","7:20593286:20595286","CGI_shore"]
[7,20733503,20733634,132,8,0.570750694382087,0.835061961567015,-0.264311267184928,-40.3398485348212,"CG","Os07g0529800","exon","translation initiation factor eIF1, protein translation factor SUI1","Protein translation factor SUI1 homolog (GOS2 protein) && sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1 && PF01253:Translation initiation factor SUI1"]
[7,20733503,20733634,132,8,0.570750694382087,0.835061961567015,-0.264311267184928,-40.3398485348212,"CG","Os07g0529800","intron","translation initiation factor eIF1, protein translation factor SUI1","Protein translation factor SUI1 homolog (GOS2 protein) && sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=GOS2 PE=2 SV=1 && PF01253:Translation initiation factor SUI1"]
[7,20834179,20834230,52,17,0.0209612804601821,0.0805153008705827,-0.0595540204104006,-84.1518982929243,"CHH","7:20833066:20835066","CGI_shore"]
[7,20887624,20887734,111,18,0.0517112290999986,0.372807251468246,-0.321096022368248,-85.8835964678611,"CHH","Os07g0532866","promoter","Os07g0532866","Hypothetical protein && sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis OX=150966 GN=nep2 PE=1 SV=1 && PF14541:Xylanase inhibitor C-terminal|PF14543:Xylanase inhibitor N-terminal"]
[7,20887624,20887734,111,18,0.0517112290999986,0.372807251468246,-0.321096022368248,-85.8835964678611,"CHH","7:20886013:20888014","CGI_shore"]
[7,20979829,20979888,60,11,0.741418636904033,0.869268229513046,-0.127849592609013,-41.9550866793967,"CG","7:20979636:20980626","CGI"]
[7,21616846,21616957,112,10,0.442411613734476,0.777231021302918,-0.334819407568442,-61.9579013994263,"CG","Os07g0545800","intron","CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1","Similar to Chitin-inducible gibberellin-responsive protein && sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CIGR1 PE=2 SV=1 && PF03514:GRAS domain family"]
[7,21616846,21616957,112,10,0.442411613734476,0.777231021302918,-0.334819407568442,-61.9579013994263,"CG","7:21615593:21617594","CGI_shore"]
[7,21678478,21678554,77,14,0.100914252317883,0.278394076141656,-0.177479823823773,-81.322621200162,"CHH","7:21678233:21680234","CGI_shore"]
[7,21678478,21678554,77,14,0.100914252317883,0.278394076141656,-0.177479823823773,-81.322621200162,"CHH","Os07g0546750","promoter","Os07g0546750","Hypothetical conserved gene && - && PF04827:Plant transposon protein"]
[7,21929024,21929163,140,47,0.388857479855929,0.711894655750087,-0.323037175894158,-280.571475142087,"CG","7:21922615:21977797","CGI"]
[7,22548921,22549069,149,30,0.0165379884590182,0.1381596230364,-0.121621634577382,-159.988179638971,"CHH","7:22547521:22549522","CGI_shore"]
[7,22548921,22549069,149,30,0.0165379884590182,0.1381596230364,-0.121621634577382,-159.988179638971,"CHH","7:22547575:22549575","CGI_shore"]
[7,22548921,22549069,149,30,0.0165379884590182,0.1381596230364,-0.121621634577382,-159.988179638971,"CHH","7:22548412:22550413","CGI_shore"]
[7,22812399,22812533,135,18,0.0477905207425968,0.335127514279939,-0.287336993537342,-98.0766400823356,"CHH","Os07g0567801","utr3","Os07g0567801","Conserved hypothetical protein && sp|Q5JLM1|PIN5A_ORYSJ Probable auxin efflux carrier component 5a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN5A PE=2 SV=1 && -"]
[7,22812399,22812533,135,18,0.0477905207425968,0.335127514279939,-0.287336993537342,-98.0766400823356,"CHH","Os07g0567801","exon","Os07g0567801","Conserved hypothetical protein && sp|Q5JLM1|PIN5A_ORYSJ Probable auxin efflux carrier component 5a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN5A PE=2 SV=1 && -"]
[7,22812399,22812533,135,18,0.0477905207425968,0.335127514279939,-0.287336993537342,-98.0766400823356,"CHH","7:22805670:22815899","CGI"]
[7,23292799,23292886,88,13,0.0352643054312656,0.296026125098004,-0.260761819666739,-76.1400554871637,"CHH","7:23290061:23293671","CGI"]
[7,23292799,23292886,88,13,0.0352643054312656,0.296026125098004,-0.260761819666739,-76.1400554871637,"CHH","Os07g0575750","promoter","Os07g0575750","Similar to Lectin receptor-type kinase && sp|Q7XUN6|SIT2_ORYSJ L-type lectin-domain containing receptor kinase SIT2 OS=Oryza sativa subsp. japonica OX=39947 GN=SIT2 PE=2 SV=2 && PF00139:Legume lectin domain|PF00069:Protein kinase domain"]
[7,23292799,23292886,88,13,0.0352643054312656,0.296026125098004,-0.260761819666739,-76.1400554871637,"CHH","Os07g0575800","promoter","NYC3-LIKE 2","Similar to hydrolase, alpha/beta fold family protein && - && PF12697:Alpha/beta hydrolase family"]
[7,23720660,23720760,101,23,0.111487917346849,0.608548584538318,-0.497060667191469,-201.223107609596,"CHG","7:23713133:23723210","CGI"]
[7,23720660,23720760,101,23,0.111487917346849,0.608548584538318,-0.497060667191469,-201.223107609596,"CHG","Os07g0584900","promoter","Os07g0584900","Armadillo-like helical domain containing protein && sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=PUB17 PE=2 SV=1 && PF00514:Armadillo/beta-catenin-like repeat"]
[7,23752051,23752111,61,5,0.228877714981947,0.662665800067,-0.433788085085053,-25.47810468762,"CG","Os07g0585100","promoter","Os07g0585100","Mo25-like domain containing protein && sp|Q9FGK3|MO25N_ARATH Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana OX=3702 GN=At5g47540 PE=2 SV=1 && PF08569:Mo25-like"]
[7,23752051,23752111,61,5,0.228877714981947,0.662665800067,-0.433788085085053,-25.47810468762,"CG","7:23751108:23753108","CGI_shore"]
[7,24036155,24036766,612,19,0.583116526830191,0.847818809488983,-0.264702282658792,-107.85478199695,"CG","Os07g0589600","promoter","Os07g0589600","Conserved hypothetical protein && - && -"]
[7,24036155,24036766,612,19,0.583116526830191,0.847818809488983,-0.264702282658792,-107.85478199695,"CG","7:24028225:24055848","CGI"]
[7,24485999,24486105,107,35,0.648136847583472,0.754767599275255,-0.106630751691783,-134.825481802991,"CG","7:24479067:24492271","CGI"]
[7,24485999,24486105,107,35,0.648136847583472,0.754767599275255,-0.106630751691783,-134.825481802991,"CG","Os07g0600000","promoter","Os07g0600000","Conserved hypothetical protein && - && -"]
[7,24508130,24508239,110,19,0.585945022931678,0.739528120429648,-0.15358309749797,-84.0931443207021,"CG","7:24506479:24508480","CGI_shore"]
[7,24508130,24508239,110,19,0.585945022931678,0.739528120429648,-0.15358309749797,-84.0931443207021,"CG","7:24507633:24509633","CGI_shore"]
[7,24508130,24508239,110,19,0.585945022931678,0.739528120429648,-0.15358309749797,-84.0931443207021,"CG","Os07g0600700","exon","Os07g0600700","X8 domain containing protein && sp|Q9SD84|PDCB2_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1 && PF07983:X8 domain"]
[7,24508130,24508239,110,19,0.585945022931678,0.739528120429648,-0.15358309749797,-84.0931443207021,"CG","Os07g0600700","utr3","Os07g0600700","X8 domain containing protein && sp|Q9SD84|PDCB2_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1 && PF07983:X8 domain"]
[7,24536993,24537059,67,12,0.249316630661842,0.429803614174552,-0.18048698351271,-56.7850195108929,"CHG","7:24533936:24556374","CGI"]
[7,24964477,24964582,106,24,0.474560092973299,0.683382520333534,-0.208822427360235,-131.148026931388,"CG","Os07g0607400","promoter","PECTIN METHYLESTERASE 20","Pectin lyase fold/virulence factor domain containing protein && sp|Q9FM79|PME62_ARATH Pectinesterase QRT1 OS=Arabidopsis thaliana OX=3702 GN=QRT1 PE=2 SV=1 && PF01095:Pectinesterase"]
[7,24964477,24964582,106,24,0.474560092973299,0.683382520333534,-0.208822427360235,-131.148026931388,"CG","7:24964267:24966268","CGI_shore"]
[7,25340503,25340627,125,27,0.141131734598319,0.296840455570523,-0.155708720972203,-168.795683464423,"CHH","7:25339482:25341483","CGI_shore"]
[7,25727900,25728040,141,8,0.465202453853982,0.731806926529017,-0.266604472675034,-39.0558665466856,"CG","7:25727083:25729083","CGI_shore"]
[7,25727900,25728040,141,8,0.465202453853982,0.731806926529017,-0.266604472675034,-39.0558665466856,"CG","Os07g0622200","exon","phospho-2-dehydro-3-deoxyheptonate aldolase, 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2","3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase, Chorismate biosynthesi && sp|Q75W16|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAHPS2 PE=2 SV=1 && PF01474:Class-II DAHP synthetase family"]
[7,25727900,25728040,141,8,0.465202453853982,0.731806926529017,-0.266604472675034,-39.0558665466856,"CG","Os07g0622250","exon","Os07g0622250","Hypothetical protein && sp|Q75W16|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAHPS2 PE=2 SV=1 && -"]
[7,25727900,25728040,141,8,0.465202453853982,0.731806926529017,-0.266604472675034,-39.0558665466856,"CG","Os07g0622250","utr5","Os07g0622250","Hypothetical protein && sp|Q75W16|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAHPS2 PE=2 SV=1 && -"]
[7,25728339,25728488,150,14,0.290019720368766,0.636278588600946,-0.34625886823218,-102.846688455104,"CG","7:25727083:25729083","CGI_shore"]
[7,25728339,25728488,150,14,0.290019720368766,0.636278588600946,-0.34625886823218,-102.846688455104,"CG","Os07g0622200","intron","phospho-2-dehydro-3-deoxyheptonate aldolase, 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2","3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase, Chorismate biosynthesi && sp|Q75W16|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAHPS2 PE=2 SV=1 && PF01474:Class-II DAHP synthetase family"]
[7,25728339,25728488,150,14,0.290019720368766,0.636278588600946,-0.34625886823218,-102.846688455104,"CG","Os07g0622250","intron","Os07g0622250","Hypothetical protein && sp|Q75W16|AROG_ORYSJ Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAHPS2 PE=2 SV=1 && -"]
[7,26376147,26376208,62,7,0.521615536757202,0.723054035847547,-0.201438499090345,-30.8966833659925,"CG","7:26374246:26376246","CGI_shore"]
[7,26376147,26376208,62,7,0.521615536757202,0.723054035847547,-0.201438499090345,-30.8966833659925,"CG","7:26375017:26377017","CGI_shore"]
[7,26376147,26376208,62,7,0.521615536757202,0.723054035847547,-0.201438499090345,-30.8966833659925,"CG","7:26376033:26378034","CGI_shore"]
[7,26376147,26376208,62,7,0.521615536757202,0.723054035847547,-0.201438499090345,-30.8966833659925,"CG","Os07g0635300","exon","Os07g0635300","Similar to Cytochrome P450 && sp|F4IK45|C70B2_ARATH Cytochrome P450 709B2 OS=Arabidopsis thaliana OX=3702 GN=CYP709B2 PE=2 SV=1 && PF00067:Cytochrome P450"]
[7,26734251,26734313,63,4,0.125318176020255,0.657336631979158,-0.532018455958903,-19.9538273503305,"CG","Os07g0642400","promoter","Os07g0642400","Similar to chromatin remodeling complex subunit && sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana OX=3702 GN=At5g05130 PE=2 SV=1 && PF00271:Helicase conserved C-terminal domain|PF13920:Zinc finger, C3HC4 type (RING finger)|PF00176:SNF2 family N-terminal domain|PF08797:HIRAN domain"]
[7,26734251,26734313,63,4,0.125318176020255,0.657336631979158,-0.532018455958903,-19.9538273503305,"CG","7:26732672:26734672","CGI_shore"]
[7,26757947,26758027,81,12,0.33627665044098,0.626912638802214,-0.290635988361234,-62.3135705236252,"CG","Os07g0642600","promoter","Os07g0642600","Transcription elongation factor, TFIIS/CRSP70, N-terminal domain containing protein && sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1 && PF08711:TFIIS helical bundle-like domain"]
[7,26757947,26758027,81,12,0.33627665044098,0.626912638802214,-0.290635988361234,-62.3135705236252,"CG","7:26757784:26759785","CGI_shore"]
[7,26830569,26830659,91,25,0.501256110002255,0.686818470786061,-0.185562360783807,-107.182683925641,"CHG","7:26830207:26832207","CGI_shore"]
[7,26830569,26830659,91,25,0.501256110002255,0.686818470786061,-0.185562360783807,-107.182683925641,"CHG","7:26830489:26830694","CGI"]
[7,27178139,27178218,80,25,0.0450735250717876,0.135515411640288,-0.0904418865685007,-160.063325614266,"CHH","Os07g0650000","promoter","Os07g0650000","Hypothetical protein && - && -"]
[7,27178139,27178218,80,25,0.0450735250717876,0.135515411640288,-0.0904418865685007,-160.063325614266,"CHH","7:27176268:27178269","CGI_shore"]
[7,27178139,27178218,80,25,0.0450735250717876,0.135515411640288,-0.0904418865685007,-160.063325614266,"CHH","7:27176901:27178901","CGI_shore"]
[7,27352841,27352911,71,17,0.540011061234182,0.773330982030759,-0.233319920796577,-88.4698398339235,"CHG","7:27352474:27354475","CGI_shore"]
[7,27535174,27535313,140,42,0.123264728799984,0.369136151145634,-0.24587142234565,-221.551864509475,"CG","7:27533206:27535206","CGI_shore"]
[7,27535174,27535313,140,42,0.123264728799984,0.369136151145634,-0.24587142234565,-221.551864509475,"CG","7:27535207:27535720","CGI"]
[7,27543806,27543928,123,14,0.402458863571947,0.635086906444326,-0.232628042872378,-65.5145717139469,"CHG","Os07g0655300","promoter","MATH-BTB protein 11, MDC protein with a BTB domain 11, MDC protein having BTB domain 11","Kelch related domain containing protein && sp|Q8L765|BPM1_ARATH BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 && PF00651:BTB/POZ domain"]
[7,27543806,27543928,123,14,0.402458863571947,0.635086906444326,-0.232628042872378,-65.5145717139469,"CHG","7:27539174:27546011","CGI"]
[7,27742917,27743086,170,57,0.750661819469974,0.828575786927815,-0.0779139674578415,-312.564658085483,"CG","Os07g0658550","exon","Os07g0658550","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[7,27742917,27743086,170,57,0.750661819469974,0.828575786927815,-0.0779139674578415,-312.564658085483,"CG","7:27742462:27747742","CGI"]
[7,27742917,27743086,170,57,0.750661819469974,0.828575786927815,-0.0779139674578415,-312.564658085483,"CG","Os07g0658500","exon","Os07g0658500","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[7,27743417,27743495,79,27,0.514845263975419,0.682121215132243,-0.167275951156824,-174.398370252514,"CG","7:27742462:27747742","CGI"]
[7,27743417,27743495,79,27,0.514845263975419,0.682121215132243,-0.167275951156824,-174.398370252514,"CG","Os07g0658550","exon","Os07g0658550","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[7,27743417,27743495,79,27,0.514845263975419,0.682121215132243,-0.167275951156824,-174.398370252514,"CG","Os07g0658500","exon","Os07g0658500","Hypothetical conserved gene && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[7,27743417,27743495,79,27,0.514845263975419,0.682121215132243,-0.167275951156824,-174.398370252514,"CG","Os07g0658550","utr5","Os07g0658550","Conserved hypothetical protein && sp|Q6L506|RIBA3_ORYSJ Probable monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RIBA3 PE=2 SV=1 && -"]
[7,27849756,27849811,56,7,0.23457258507657,0.594565389394541,-0.359992804317971,-31.7877534217027,"CHG","7:27846265:27851161","CGI"]
[7,27849756,27849811,56,7,0.23457258507657,0.594565389394541,-0.359992804317971,-31.7877534217027,"CHG","Os07g0660700","promoter","OsWD40-149","WD repeat protein 55 domain containing protein && sp|O80775|WDR55_ARATH WD repeat-containing protein 55 OS=Arabidopsis thaliana OX=3702 GN=WDR55 PE=1 SV=2 && -"]
[7,28063836,28064176,341,61,0.0210967772272593,0.186845579338367,-0.165748802111107,-325.414013654259,"CHG","Os07g0664900","promoter","Os07g0664900","Similar to Short-chain dehydrogenase/reductase (Fragment) && sp|P50160|TS2_MAIZE Sex determination protein tasselseed-2 OS=Zea mays OX=4577 GN=TS2 PE=2 SV=1 && PF13561:Enoyl-(Acyl carrier protein) reductase"]
[7,28063837,28064148,312,85,0.0761144522843215,0.409899633170633,-0.333785180886312,-770.846312524895,"CG","Os07g0664900","promoter","Os07g0664900","Similar to Short-chain dehydrogenase/reductase (Fragment) && sp|P50160|TS2_MAIZE Sex determination protein tasselseed-2 OS=Zea mays OX=4577 GN=TS2 PE=2 SV=1 && PF13561:Enoyl-(Acyl carrier protein) reductase"]
[7,28064827,28064893,67,22,0.0329626064141581,0.119871875173017,-0.0869092687588593,-127.131130605296,"CHH","Os07g0664900","promoter","Os07g0664900","Similar to Short-chain dehydrogenase/reductase (Fragment) && sp|P50160|TS2_MAIZE Sex determination protein tasselseed-2 OS=Zea mays OX=4577 GN=TS2 PE=2 SV=1 && PF13561:Enoyl-(Acyl carrier protein) reductase"]
[7,28456936,28457055,120,12,0.527237742758508,0.813863698953644,-0.286625956195136,-57.4560120504128,"CG","7:28456548:28456940","CGI"]
[7,28456936,28457055,120,12,0.527237742758508,0.813863698953644,-0.286625956195136,-57.4560120504128,"CG","Os07g0673200","promoter","nitrogen limitation adaptation 1","RING-type E3 ubiquitin-ligase, Maintenance of phosphate homeostasis via degradation of phosphate transporter && sp|Q7XI73|BAHL2_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0673200 PE=2 SV=1 && PF13920:Zinc finger, C3HC4 type (RING finger)"]
[7,28456936,28457055,120,12,0.527237742758508,0.813863698953644,-0.286625956195136,-57.4560120504128,"CG","7:28456940:28458941","CGI_shore"]
[7,28782851,28783063,213,17,0.0665689464763627,0.464252017632591,-0.397683071156228,-118.986719506548,"CG","7:28781353:28783353","CGI_shore"]
[7,28782851,28783063,213,17,0.0665689464763627,0.464252017632591,-0.397683071156228,-118.986719506548,"CG","Os07g0679500","intron","b-ZIP TRANSCRIPTION FACTOR 61","Similar to Transcription factor RF2b && sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 SV=2 && PF00170:bZIP transcription factor"]
[7,29459890,29460042,153,33,0.162601784352874,0.41567183952953,-0.253070055176656,-169.463235276399,"CHH","7:29458593:29461633","CGI"]
[7,29459890,29460042,153,33,0.162601784352874,0.41567183952953,-0.253070055176656,-169.463235276399,"CHH","Os07g0692300","promoter","Os07g0692300","Hypothetical gene && - && -"]
[7,29459890,29460042,153,33,0.162601784352874,0.41567183952953,-0.253070055176656,-169.463235276399,"CHH","Os07g0692200","promoter","Os07g0692200","Uncharacterised protein family UPF0497, trans-membrane plant domain containing protein && sp|Q84NQ7|CSPL4_ORYSJ CASP-like protein 4B1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0692200 PE=3 SV=1 && PF04535:Domain of unknown function (DUF588)"]
[7,29602703,29602800,98,13,0.313965782319898,0.575720405770429,-0.26175462345053,-58.3123994502797,"CHG","7:29598225:29610285","CGI"]
[8,385188,385574,387,59,0.185256476852412,0.425750851753787,-0.240494374901375,-372.089857858873,"CHG","8:383400:386122","CGI"]
[8,385188,385574,387,59,0.185256476852412,0.425750851753787,-0.240494374901375,-372.089857858873,"CHG","Os08g0108001","intron","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385188,385574,387,59,0.185256476852412,0.425750851753787,-0.240494374901375,-372.089857858873,"CHG","Os08g0107800","promoter","Os08g0107800","Pentatricopeptide repeat domain containing protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[8,385188,385574,387,59,0.185256476852412,0.425750851753787,-0.240494374901375,-372.089857858873,"CHG","Os08g0107900","intron","MAGO NASHI 1","Similar to Protein mago nashi && sp|A0A0P0XB70|MGN1_ORYSJ Protein mago nashi homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MAGO1 PE=1 SV=1 && PF02792:Mago nashi protein"]
[8,385188,385574,387,59,0.185256476852412,0.425750851753787,-0.240494374901375,-372.089857858873,"CHG","Target=(CGG)n:2-177;Class=Simple_repeat","repeat"]
[8,385188,385574,387,59,0.185256476852412,0.425750851753787,-0.240494374901375,-372.089857858873,"CHG","Os08g0108001","utr5","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385188,385574,387,59,0.185256476852412,0.425750851753787,-0.240494374901375,-372.089857858873,"CHG","Os08g0108001","exon","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","8:383400:386122","CGI"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","Os08g0108001","intron","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","Os08g0107800","promoter","Os08g0107800","Pentatricopeptide repeat domain containing protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","Os08g0107900","intron","MAGO NASHI 1","Similar to Protein mago nashi && sp|A0A0P0XB70|MGN1_ORYSJ Protein mago nashi homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MAGO1 PE=1 SV=1 && PF02792:Mago nashi protein"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","Target=(CGG)n:2-177;Class=Simple_repeat","repeat"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","Os08g0108001","utr5","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385189,385546,358,88,0.446116681659723,0.784648738971121,-0.338532057311398,-1062.58789795817,"CG","Os08g0108001","exon","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","8:383400:386122","CGI"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","Os08g0108001","intron","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","Os08g0107800","promoter","Os08g0107800","Pentatricopeptide repeat domain containing protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF12854:PPR repeat|PF13041:PPR repeat family"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","Os08g0107900","intron","MAGO NASHI 1","Similar to Protein mago nashi && sp|A0A0P0XB70|MGN1_ORYSJ Protein mago nashi homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MAGO1 PE=1 SV=1 && PF02792:Mago nashi protein"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","Target=(CGG)n:2-177;Class=Simple_repeat","repeat"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","Os08g0108001","utr5","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,385258,385561,304,70,0.0820442021893248,0.252052535645871,-0.170008333456547,-425.949710347129,"CHH","Os08g0108001","exon","Os08g0108001","Hypothetical protein && sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 && PF13041:PPR repeat family|PF12854:PPR repeat"]
[8,754554,754692,139,44,0.0896225067581279,0.147085391512511,-0.0574628847543829,-153.357210637429,"CHH","Os08g0114150","promoter","Os08g0114150","Similar to predicted protein && sp|F4J3H7|ZRK7_ARATH Serine/threonine-protein kinase ZRK7 OS=Arabidopsis thaliana OX=3702 GN=ZRK7 PE=2 SV=1 && -"]
[8,754554,754692,139,44,0.0896225067581279,0.147085391512511,-0.0574628847543829,-153.357210637429,"CHH","ENSRNA049476255","promoter","U2","U2 spliceosomal RNA && - && -"]
[8,792061,792168,108,26,0.187068648988644,0.514900668502966,-0.327832019514322,-115.110814371918,"CHH","8:790270:792270","CGI_shore"]
[8,792061,792168,108,26,0.187068648988644,0.514900668502966,-0.327832019514322,-115.110814371918,"CHH","8:791176:793177","CGI_shore"]
[8,947969,948072,104,29,0.0128682053275308,0.150469257245178,-0.137601051917648,-140.476472211609,"CHH","Os08g0117000","promoter","POLLEN SEMI-STERILITY 1","Kinesin-1-like protein, Male meiosis and anther dehiscenc && sp|F9W301|KN1_ORYSJ Kinesin-like protein KIN-1 OS=Oryza sativa subsp. japonica OX=39947 GN=KIN1 PE=1 SV=1 && PF00225:Kinesin motor domain"]
[8,947969,948072,104,29,0.0128682053275308,0.150469257245178,-0.137601051917648,-140.476472211609,"CHH","8:946043:948043","CGI_shore"]
[8,947969,948072,104,29,0.0128682053275308,0.150469257245178,-0.137601051917648,-140.476472211609,"CHH","Os08g0117000","TSS","POLLEN SEMI-STERILITY 1","Kinesin-1-like protein, Male meiosis and anther dehiscenc && sp|F9W301|KN1_ORYSJ Kinesin-like protein KIN-1 OS=Oryza sativa subsp. japonica OX=39947 GN=KIN1 PE=1 SV=1 && PF00225:Kinesin motor domain"]
[8,947969,948072,104,29,0.0128682053275308,0.150469257245178,-0.137601051917648,-140.476472211609,"CHH","Os08g0117000","exon","POLLEN SEMI-STERILITY 1","Kinesin-1-like protein, Male meiosis and anther dehiscenc && sp|F9W301|KN1_ORYSJ Kinesin-like protein KIN-1 OS=Oryza sativa subsp. japonica OX=39947 GN=KIN1 PE=1 SV=1 && PF00225:Kinesin motor domain"]
[8,947969,948072,104,29,0.0128682053275308,0.150469257245178,-0.137601051917648,-140.476472211609,"CHH","Os08g0117000","utr5","POLLEN SEMI-STERILITY 1","Kinesin-1-like protein, Male meiosis and anther dehiscenc && sp|F9W301|KN1_ORYSJ Kinesin-like protein KIN-1 OS=Oryza sativa subsp. japonica OX=39947 GN=KIN1 PE=1 SV=1 && PF00225:Kinesin motor domain"]
[8,947969,948072,104,29,0.0128682053275308,0.150469257245178,-0.137601051917648,-140.476472211609,"CHH","8:948044:948557","CGI"]
[8,1485040,1485123,84,23,0.042368457437206,0.166456182834811,-0.124087725397605,-113.944273587205,"CHH","8:1483692:1485081","CGI"]
[8,1485040,1485123,84,23,0.042368457437206,0.166456182834811,-0.124087725397605,-113.944273587205,"CHH","8:1485081:1487082","CGI_shore"]
[8,1950572,1950627,56,18,0.482368657153291,0.87543113434372,-0.393062477190429,-87.5614718892936,"CG","8:1950007:1950627","CGI"]
[8,2031410,2031562,153,10,0.431307449067811,0.720280400413556,-0.288972951345745,-51.5221911297463,"CG","8:2030329:2032330","CGI_shore"]
[8,2031410,2031562,153,10,0.431307449067811,0.720280400413556,-0.288972951345745,-51.5221911297463,"CG","8:2031092:2033093","CGI_shore"]
[8,2031410,2031562,153,10,0.431307449067811,0.720280400413556,-0.288972951345745,-51.5221911297463,"CG","Os08g0136001","exon","Os08g0136001","Hypothetical gene && sp|P43283|TRPB1_MAIZE Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays OX=4577 GN=TSB1 PE=2 SV=1 && PF00291:Pyridoxal-phosphate dependent enzyme"]
[8,2031410,2031562,153,10,0.431307449067811,0.720280400413556,-0.288972951345745,-51.5221911297463,"CG","Os08g0135900","exon","tryptophan synthase","Similar to Tryptophan synthase beta chain 1 (EC 4.2.1.20 && sp|P43284|TRPB2_MAIZE Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays OX=4577 GN=TSB2 PE=2 SV=1 && PF00291:Pyridoxal-phosphate dependent enzyme"]
[8,2036175,2036396,222,65,0.0693402935398255,0.177735791089436,-0.108395497549611,-384.140925870899,"CG","8:2035033:2037386","CGI"]
[8,2036175,2036396,222,65,0.0693402935398255,0.177735791089436,-0.108395497549611,-384.140925870899,"CG","Os08g0136100","exon","RICE OUTMOST CELL-SPECIFIC GENE 7","Similar to Roc1 && sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC7 PE=2 SV=1 && PF01852:START domain|PF00046:Homeodomain"]
[8,2519315,2519390,76,15,0.322717914379316,0.585225363122924,-0.262507448743607,-73.1380481754762,"CHG","8:2517461:2519462","CGI_shore"]
[8,2519315,2519390,76,15,0.322717914379316,0.585225363122924,-0.262507448743607,-73.1380481754762,"CHG","8:2519277:2541542","CGI"]
[8,2577572,2577701,130,43,0.596521398250388,0.853973987966912,-0.257452589716524,-206.082764176548,"CG","Os08g0145600","intron","Os08g0145600","Similar to cDNA clone:J023091L02, full insert sequence && sp|Q3E6S8|DGP14_ARATH Putative protease Do-like 14 OS=Arabidopsis thaliana OX=3702 GN=DEGP14 PE=3 SV=2 && -"]
[8,2577572,2577701,130,43,0.596521398250388,0.853973987966912,-0.257452589716524,-206.082764176548,"CG","8:2577353:2578008","CGI"]
[8,3131535,3131647,113,20,0.409013517029833,0.637451064204721,-0.228437547174888,-103.737085674327,"CG","Os08g0154300","exon","Os08g0154300","Aldolase-type TIM barrel domain containing protein && sp|Q0I1U0|TAL_HAES1 Transaldolase OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=tal PE=3 SV=1 && -"]
[8,3131535,3131647,113,20,0.409013517029833,0.637451064204721,-0.228437547174888,-103.737085674327,"CG","8:3131533:3132200","CGI"]
[8,3131535,3131647,113,20,0.409013517029833,0.637451064204721,-0.228437547174888,-103.737085674327,"CG","Os08g0154300","intron","Os08g0154300","Aldolase-type TIM barrel domain containing protein && sp|Q0I1U0|TAL_HAES1 Transaldolase OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=tal PE=3 SV=1 && -"]
[8,3264929,3265028,100,22,0.16206855621899,0.505466794650413,-0.343398238431423,-117.825642553157,"CG","8:3262963:3264963","CGI_shore"]
[8,3264929,3265028,100,22,0.16206855621899,0.505466794650413,-0.343398238431423,-117.825642553157,"CG","8:3264964:3265384","CGI"]
[8,3408436,3408574,139,15,0.469134047218254,0.787217788738253,-0.318083741519999,-79.8886836693222,"CG","Os08g0158200","exon","Os08g0158200","FAD linked oxidase, N-terminal domain containing protein && sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica OX=3467 GN=BBE1 PE=1 SV=1 && PF08031:Berberine and berberine like|PF01565:FAD binding domain"]
[8,3408436,3408574,139,15,0.469134047218254,0.787217788738253,-0.318083741519999,-79.8886836693222,"CG","8:3407157:3409157","CGI_shore"]
[8,3501068,3501192,125,32,0.0213257019570742,0.155732962299218,-0.134407260342144,-147.106260229122,"CHH","8:3499249:3501250","CGI_shore"]
[8,3659569,3659624,56,20,0.199584525992691,0.56054940175145,-0.360964875758759,-141.165402889977,"CHH","Os08g0162066","exon","Os08g0162066","Conserved hypothetical protein && - && -"]
[8,3659569,3659624,56,20,0.199584525992691,0.56054940175145,-0.360964875758759,-141.165402889977,"CHH","Os08g0162066","utr5","Os08g0162066","Conserved hypothetical protein && - && -"]
[8,4235813,4235942,130,12,0.402392347261296,0.695554719201057,-0.293162371939761,-56.0323892425222,"CHG","Os08g0172200","promoter","Os08g0172200","UvrB/UvrC protein domain containing protein && sp|Q67Y99|CLPF_ARATH Clp protease adapter protein ClpF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPF PE=1 SV=1 && PF02151:UvrB/uvrC motif|PF08755:Hemimethylated DNA-binding protein YccV like"]
[8,4235813,4235942,130,12,0.402392347261296,0.695554719201057,-0.293162371939761,-56.0323892425222,"CHG","8:4235410:4237338","CGI"]
[8,4246771,4246821,51,17,0.0307543369131002,0.119178179298133,-0.0884238423850329,-82.8624995153766,"CHH","8:4245823:4247823","CGI_shore"]
[8,4246771,4246821,51,17,0.0307543369131002,0.119178179298133,-0.0884238423850329,-82.8624995153766,"CHH","Os08g0172300","intron","Os08g0172300","Similar to H1005F08.16 protein && - && -"]
[8,4276063,4276146,84,21,0.0387158643099334,0.140605970100605,-0.101890105790671,-97.8665453919183,"CHH","8:4274227:4276227","CGI_shore"]
[8,4383728,4383882,155,20,0.402435388335442,0.651050014533654,-0.248614626198212,-107.135839034698,"CHG","8:4382715:4384716","CGI_shore"]
[8,4436745,4436858,114,22,0.0123451626146051,0.302830387948358,-0.290485225333753,-156.649513002599,"CHH","8:4436119:4438120","CGI_shore"]
[8,4436745,4436858,114,22,0.0123451626146051,0.302830387948358,-0.290485225333753,-156.649513002599,"CHH","8:4436594:4438143","CGI"]
[8,4611040,4611161,122,12,0.182554674235168,0.442948770946669,-0.260394096711501,-67.3372541857945,"CG","8:4609676:4611676","CGI_shore"]
[8,4611040,4611161,122,12,0.182554674235168,0.442948770946669,-0.260394096711501,-67.3372541857945,"CG","Os08g0178800","intron","B-box-containing protein 24","Hypothetical conserved gene && - && -"]
[8,4622039,4622141,103,8,0.153231212494865,0.52006581760075,-0.366834605105885,-43.2478430537079,"CHG","8:4620397:4622398","CGI_shore"]
[8,4622039,4622141,103,8,0.153231212494865,0.52006581760075,-0.366834605105885,-43.2478430537079,"CHG","Os08g0178900","promoter","Os08g0178900","Homeodomain-like domain containing protein && - && PF14303:No apical meristem-associated C-terminal domain"]
[8,4622039,4622141,103,8,0.153231212494865,0.52006581760075,-0.366834605105885,-43.2478430537079,"CHG","8:4621587:4622203","CGI"]
[8,4629725,4629786,62,12,0.692861272627911,0.88723846793361,-0.194377195305699,-58.1244023254614,"CG","8:4628413:4630413","CGI_shore"]
[8,4629725,4629786,62,12,0.692861272627911,0.88723846793361,-0.194377195305699,-58.1244023254614,"CG","Os08g0179000","promoter","Os08g0179000","Protein kinase, catalytic domain domain containing protein && sp|Q9SY89|Y1661_ARATH Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 OS=Arabidopsis thaliana OX=3702 GN=At1g61610 PE=3 SV=1 && -"]
[8,4629725,4629786,62,12,0.692861272627911,0.88723846793361,-0.194377195305699,-58.1244023254614,"CG","8:4629724:4630092","CGI"]
[8,4629914,4630091,178,29,0.684921910331329,0.873298184436121,-0.188376274104792,-140.527021613652,"CG","8:4628413:4630413","CGI_shore"]
[8,4629914,4630091,178,29,0.684921910331329,0.873298184436121,-0.188376274104792,-140.527021613652,"CG","Os08g0179000","promoter","Os08g0179000","Protein kinase, catalytic domain domain containing protein && sp|Q9SY89|Y1661_ARATH Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 OS=Arabidopsis thaliana OX=3702 GN=At1g61610 PE=3 SV=1 && -"]
[8,4629914,4630091,178,29,0.684921910331329,0.873298184436121,-0.188376274104792,-140.527021613652,"CG","8:4629724:4630092","CGI"]
[8,4756236,4756289,54,9,0.0541307306454066,0.183367865772964,-0.129237135127558,-50.2073874497129,"CG","8:4755430:4756360","CGI"]
[8,4768783,4768943,161,37,0.0135645677509506,0.13138924672116,-0.117824678970209,-199.444802310165,"CHH","8:4768895:4769114","CGI"]
[8,4768783,4768943,161,37,0.0135645677509506,0.13138924672116,-0.117824678970209,-199.444802310165,"CHH","8:4766894:4768894","CGI_shore"]
[8,4810764,4810837,74,8,0.080843724360777,0.511392884929065,-0.430549160568288,-47.6442376275582,"CHG","8:4808839:4812673","CGI"]
[8,5114841,5114965,125,43,0.211286900756251,0.359604766994192,-0.148317866237941,-194.126152910623,"CG","8:5113134:5116140","CGI"]
[8,5114841,5114965,125,43,0.211286900756251,0.359604766994192,-0.148317866237941,-194.126152910623,"CG","Os08g0187500","exon","RICE OUTMOST CELL-SPECIFIC GENE 1","Similar to Roc1 && sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC1 PE=2 SV=1 && -"]
[8,5114841,5114965,125,43,0.211286900756251,0.359604766994192,-0.148317866237941,-194.126152910623,"CG","Os08g0187500","utr3","RICE OUTMOST CELL-SPECIFIC GENE 1","Similar to Roc1 && sp|Q6ZAR0|ROC1_ORYSJ Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC1 PE=2 SV=1 && -"]
[8,5485820,5485893,74,10,0.151976011602059,0.316431214121766,-0.164455202519707,-50.7216479531013,"CG","8:5484834:5486834","CGI_shore"]
[8,5485820,5485893,74,10,0.151976011602059,0.316431214121766,-0.164455202519707,-50.7216479531013,"CG","8:5485541:5485909","CGI"]
[8,5569850,5569941,92,24,0.615096407066421,0.852042091817357,-0.236945684750936,-118.385246411861,"CG","8:5568507:5570508","CGI_shore"]
[8,5569850,5569941,92,24,0.615096407066421,0.852042091817357,-0.236945684750936,-118.385246411861,"CG","Os08g0195650","exon","Os08g0195650","Conserved hypothetical protein && - && -"]
[8,5569850,5569941,92,24,0.615096407066421,0.852042091817357,-0.236945684750936,-118.385246411861,"CG","8:5569478:5570232","CGI"]
[8,5569850,5569941,92,24,0.615096407066421,0.852042091817357,-0.236945684750936,-118.385246411861,"CG","8:5568820:5570820","CGI_shore"]
[8,5618883,5618960,78,33,0.0525280092724219,0.151601312956668,-0.0990733036842461,-147.449353517252,"CG","8:5618542:5619272","CGI"]
[8,5618883,5618960,78,33,0.0525280092724219,0.151601312956668,-0.0990733036842461,-147.449353517252,"CG","Os08g0197100","exon","F-box protein 421","Cyclin-like F-box domain containing protein && sp|Q9FM87|FBD26_ARATH Putative FBD-associated F-box protein At5g56440 OS=Arabidopsis thaliana OX=3702 GN=At5g56440 PE=4 SV=1 && -"]
[8,5679221,5679512,292,103,0.0652484449761019,0.259541683439308,-0.194293238463206,-753.626227599819,"CG","8:5677386:5682879","CGI"]
[8,5679221,5679512,292,103,0.0652484449761019,0.259541683439308,-0.194293238463206,-753.626227599819,"CG","Os08g0198300","promoter","Os08g0198300","Similar to speckle-type POZ protein && sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 && -"]
[8,5689661,5689742,82,10,0.176525123606832,0.563952997737016,-0.387427874130184,-45.3168517393955,"CHG","8:5688201:5690767","CGI"]
[8,5689661,5689742,82,10,0.176525123606832,0.563952997737016,-0.387427874130184,-45.3168517393955,"CHG","Os08g0198700","promoter","GLYCOLATE OXIDASE 6","Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment) && sp|B8AKX6|GLO1_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. indica OX=39946 GN=GLO1 PE=3 SV=1 && -"]
[8,5935284,5935373,90,9,0.369381282508298,0.684710818117953,-0.315329535609654,-50.521139946319,"CHG","8:5934124:5936125","CGI_shore"]
[8,5935284,5935373,90,9,0.369381282508298,0.684710818117953,-0.315329535609654,-50.521139946319,"CHG","8:5934167:5936167","CGI_shore"]
[8,5989965,5990071,107,24,0.0572976392344336,0.192669353551549,-0.135371714317115,-140.375746763471,"CHH","8:5987993:5989993","CGI_shore"]
[8,5989965,5990071,107,24,0.0572976392344336,0.192669353551549,-0.135371714317115,-140.375746763471,"CHH","Os08g0203150","promoter","Os08g0203150","Hypothetical gene && sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana OX=3702 GN=At1g56130 PE=2 SV=2 && PF00069:Protein kinase domain"]
[8,5989965,5990071,107,24,0.0572976392344336,0.192669353551549,-0.135371714317115,-140.375746763471,"CHH","8:5989994:5991156","CGI"]
[8,6051544,6051779,236,78,0.568624555755299,0.846079458296471,-0.277454902541172,-392.669214485778,"CG","8:6051122:6056512","CGI"]
[8,6051754,6051820,67,10,0.291239074730199,0.535706740415905,-0.244467665685706,-43.9744882221451,"CHG","8:6051122:6056512","CGI"]
[8,6117949,6118016,68,22,0.801293298170858,0.896371158916464,-0.0950778607456061,-84.2497526714512,"CG","8:6116871:6118871","CGI_shore"]
[8,6117949,6118016,68,22,0.801293298170858,0.896371158916464,-0.0950778607456061,-84.2497526714512,"CG","8:6116919:6118230","CGI"]
[8,6117949,6118016,68,22,0.801293298170858,0.896371158916464,-0.0950778607456061,-84.2497526714512,"CG","8:6117584:6119584","CGI_shore"]
[8,6161002,6161095,94,10,0.190265571583518,0.428416942509748,-0.23815137092623,-55.4424780991724,"CG","Os08g0205400","exon","Os08g0205400","Cu chaperone, Root-to-shoot Cu translocation, Distribution of Cu from old leaves to developing tissues and seed && sp|Q94BT9|ATOX1_ARATH Copper transport protein ATX1 OS=Arabidopsis thaliana OX=3702 GN=ATX1 PE=1 SV=2 && PF00403:Heavy-metal-associated domain"]
[8,6161002,6161095,94,10,0.190265571583518,0.428416942509748,-0.23815137092623,-55.4424780991724,"CG","8:6159264:6161265","CGI_shore"]
[8,6161002,6161095,94,10,0.190265571583518,0.428416942509748,-0.23815137092623,-55.4424780991724,"CG","8:6160003:6162003","CGI_shore"]
[8,6161002,6161095,94,10,0.190265571583518,0.428416942509748,-0.23815137092623,-55.4424780991724,"CG","Os08g0205650","promoter","Os08g0205650","Hypothetical protein && - && -"]
[8,6469537,6469661,125,20,0.266004878607352,0.494906144089039,-0.228901265481687,-100.122196439727,"CHG","8:6468688:6473792","CGI"]
[8,7167479,7167535,57,10,0.0436942004140907,0.175210919041268,-0.131516718627177,-58.889325135341,"CHG","8:7166477:7168478","CGI_shore"]
[8,7167479,7167535,57,10,0.0436942004140907,0.175210919041268,-0.131516718627177,-58.889325135341,"CHG","Os08g0218700","promoter","Os08g0218700","Conserved hypothetical protein && sp|Q6YUE5|Y8187_ORYSJ Uncharacterized protein Os08g0218700/LOC_Os08g12160 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0218700 PE=1 SV=1 && -"]
[8,7167479,7167535,57,10,0.0436942004140907,0.175210919041268,-0.131516718627177,-58.889325135341,"CHG","8:7167401:7167838","CGI"]
[8,7328456,7328608,153,32,0.0266457408617009,0.19392845177415,-0.167282710912449,-173.195272986205,"CHH","8:7327609:7329609","CGI_shore"]
[8,7328456,7328608,153,32,0.0266457408617009,0.19392845177415,-0.167282710912449,-173.195272986205,"CHH","8:7327663:7329664","CGI_shore"]
[8,7328456,7328608,153,32,0.0266457408617009,0.19392845177415,-0.167282710912449,-173.195272986205,"CHH","Os08g0220400","promoter","PECTIN METHYLESTERASE 24","Pectin lyase fold/virulence factor domain containing protein && sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana OX=3702 GN=PME32 PE=2 SV=1 && PF01095:Pectinesterase"]
[8,7328456,7328608,153,32,0.0266457408617009,0.19392845177415,-0.167282710912449,-173.195272986205,"CHH","8:7328475:7330475","CGI_shore"]
[8,7833040,7833125,86,9,0.345581061676988,0.50777207634581,-0.162191014668822,-36.3960780461449,"CHG","Os08g0228200","promoter","MATH-BTB protein 15, MDC protein with a BTB domain 15, MDC protein having BTB domain 15","BTB/POZ-like domain containing protein && sp|Q9M8J9|BPM2_ARATH BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 && PF00651:BTB/POZ domain"]
[8,7988942,7989050,109,17,0.217455357708526,0.564953416247489,-0.347498058538963,-93.6426138841984,"CHG","8:7987741:7990047","CGI"]
[8,7988942,7989050,109,17,0.217455357708526,0.564953416247489,-0.347498058538963,-93.6426138841984,"CHG","Os08g0230900","exon","Os08g0230900","Similar to Subtilisin protease (Fragment) && sp|Q9LVJ1|SBT14_ARATH Subtilisin-like protease SBT1.4 OS=Arabidopsis thaliana OX=3702 GN=SBT1.4 PE=2 SV=1 && -"]
[8,7989405,7989558,154,18,0.338199969655227,0.627532556554294,-0.289332586899067,-85.6931603941712,"CHG","8:7987741:7990047","CGI"]
[8,7989405,7989558,154,18,0.338199969655227,0.627532556554294,-0.289332586899067,-85.6931603941712,"CHG","Os08g0230900","exon","Os08g0230900","Similar to Subtilisin protease (Fragment) && sp|Q9LVJ1|SBT14_ARATH Subtilisin-like protease SBT1.4 OS=Arabidopsis thaliana OX=3702 GN=SBT1.4 PE=2 SV=1 && -"]
[8,7989405,7989558,154,18,0.338199969655227,0.627532556554294,-0.289332586899067,-85.6931603941712,"CHG","Os08g0230900","utr3","Os08g0230900","Similar to Subtilisin protease (Fragment) && sp|Q9LVJ1|SBT14_ARATH Subtilisin-like protease SBT1.4 OS=Arabidopsis thaliana OX=3702 GN=SBT1.4 PE=2 SV=1 && -"]
[8,7989405,7989558,154,18,0.338199969655227,0.627532556554294,-0.289332586899067,-85.6931603941712,"CHG","8:7989548:7991548","CGI_shore"]
[8,8016349,8016518,170,36,0.0694856630273643,0.315107871506948,-0.245622208479584,-247.932106595897,"CHH","8:8015390:8017391","CGI_shore"]
[8,8016349,8016518,170,36,0.0694856630273643,0.315107871506948,-0.245622208479584,-247.932106595897,"CHH","8:8016435:8018435","CGI_shore"]
[8,8250397,8250502,106,24,0.25343081084312,0.484138063182881,-0.230707252339761,-101.984751201227,"CHG","8:8249519:8251519","CGI_shore"]
[8,8250397,8250502,106,24,0.25343081084312,0.484138063182881,-0.230707252339761,-101.984751201227,"CHG","8:8249613:8250738","CGI"]
[8,8262770,8262820,51,12,0.670636346984765,0.850909104709364,-0.180272757724599,-49.9910885368184,"CG","8:8262213:8264213","CGI_shore"]
[8,8262770,8262820,51,12,0.670636346984765,0.850909104709364,-0.180272757724599,-49.9910885368184,"CG","8:8262477:8263069","CGI"]
[8,8467784,8467883,100,15,0.226254974309433,0.411411433511134,-0.1851564592017,-69.9042510418773,"CHH","Os08g0239900","intron","Os08g0239900","Similar to Flavonol 4-sulfotransferase && sp|Q9FX56|SOT8_ARATH Cytosolic sulfotransferase 8 OS=Arabidopsis thaliana OX=3702 GN=SOT8 PE=2 SV=1 && PF00685:Sulfotransferase domain"]
[8,8467784,8467883,100,15,0.226254974309433,0.411411433511134,-0.1851564592017,-69.9042510418773,"CHH","8:8466820:8468821","CGI_shore"]
[8,8579855,8580023,169,39,0.591850496606359,0.828211562010969,-0.23636106540461,-240.691677829353,"CG","8:8579612:8580092","CGI"]
[8,8579855,8580023,169,39,0.591850496606359,0.828211562010969,-0.23636106540461,-240.691677829353,"CG","Os08g0241400","promoter","RING finger protein","Similar to protein binding protein && sp|O49500|MBR2_ARATH E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 && PF13639:Ring finger domain"]
[8,8589895,8589974,80,9,0.290311984463768,0.564279560836965,-0.273967576373197,-45.8598793449788,"CG","Os08g0241600","intron","Os08g0241600","Similar to apospory-associated protein C && sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1 && PF01263:Aldose 1-epimerase"]
[8,8590395,8590532,138,10,0.204439552159621,0.550351945405296,-0.345912393245674,-70.2919676046909,"CG","Os08g0241600","intron","Os08g0241600","Similar to apospory-associated protein C && sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1 && PF01263:Aldose 1-epimerase"]
[8,9391091,9391160,70,10,0.432361996730779,0.72175685248319,-0.289394855752411,-48.1124549725922,"CHG","8:9389879:9391880","CGI_shore"]
[8,9919275,9919379,105,16,0.01194160655105,0.343283730276765,-0.331342123725715,-107.061725726662,"CHH","8:9917326:9919326","CGI_shore"]
[8,9919275,9919379,105,16,0.01194160655105,0.343283730276765,-0.331342123725715,-107.061725726662,"CHH","8:9919327:9924223","CGI"]
[8,10241473,10241647,175,27,0.354662189389257,0.602698851790073,-0.248036662400816,-123.865924946815,"CHG","8:10241386:10242303","CGI"]
[8,10241473,10241647,175,27,0.354662189389257,0.602698851790073,-0.248036662400816,-123.865924946815,"CHG","8:10241438:10243438","CGI_shore"]
[8,10514390,10514441,52,7,0.436494419536741,0.71779563901662,-0.28130121947988,-30.5834324885902,"CHG","8:10514089:10516089","CGI_shore"]
[8,10554278,10554402,125,34,0.0296452944014206,0.0766960057306855,-0.0470507113292649,-140.491266436979,"CHH","8:10553024:10555025","CGI_shore"]
[8,10554278,10554402,125,34,0.0296452944014206,0.0766960057306855,-0.0470507113292649,-140.491266436979,"CHH","8:10553151:10555151","CGI_shore"]
[8,10554278,10554402,125,34,0.0296452944014206,0.0766960057306855,-0.0470507113292649,-140.491266436979,"CHH","8:10553817:10555817","CGI_shore"]
[8,10806350,10806513,164,42,0.636208184615141,0.842372955068443,-0.206164770453302,-177.394732909745,"CG","8:10803655:10806778","CGI"]
[8,10809343,10809497,155,25,0.0101849465652151,0.256517075817173,-0.246332129251958,-153.46280738219,"CHH","8:10809076:10809345","CGI"]
[8,10809343,10809497,155,25,0.0101849465652151,0.256517075817173,-0.246332129251958,-153.46280738219,"CHH","8:10809345:10811346","CGI_shore"]
[8,10900137,10900222,86,41,0.0402589543127319,0.0947095625001931,-0.0544506081874612,-159.269432586169,"CG","Os08g0280100","exon","PURPLE ACID PHOSPHATASE 23","Similar to Phytase && sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15 OS=Arabidopsis thaliana OX=3702 GN=PAP15 PE=1 SV=1 && -"]
[8,10900137,10900222,86,41,0.0402589543127319,0.0947095625001931,-0.0544506081874612,-159.269432586169,"CG","8:10900007:10900909","CGI"]
[8,10900137,10900222,86,41,0.0402589543127319,0.0947095625001931,-0.0544506081874612,-159.269432586169,"CG","Os08g0280125","TES","Os08g0280125","Hypothetical protein && sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15 OS=Arabidopsis thaliana OX=3702 GN=PAP15 PE=1 SV=1 && -"]
[8,10900137,10900222,86,41,0.0402589543127319,0.0947095625001931,-0.0544506081874612,-159.269432586169,"CG","Os08g0280125","utr3","Os08g0280125","Hypothetical protein && sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15 OS=Arabidopsis thaliana OX=3702 GN=PAP15 PE=1 SV=1 && -"]
[8,10900137,10900222,86,41,0.0402589543127319,0.0947095625001931,-0.0544506081874612,-159.269432586169,"CG","Os08g0280125","exon","Os08g0280125","Hypothetical protein && sp|Q9SFU3|PPA15_ARATH Purple acid phosphatase 15 OS=Arabidopsis thaliana OX=3702 GN=PAP15 PE=1 SV=1 && -"]
[8,11027214,11027313,100,9,0.292694405613563,0.468042733894914,-0.175348328281351,-44.0108461251252,"CG","8:11025242:11027243","CGI_shore"]
[8,11027214,11027313,100,9,0.292694405613563,0.468042733894914,-0.175348328281351,-44.0108461251252,"CG","Target=RETROFIT_I-int:1-2340;Class=LTR/Copia","repeat"]
[8,11071457,11071507,51,6,0.205192334952614,0.581585423133184,-0.376393088180569,-31.3332080910157,"CHG","8:11070431:11072432","CGI_shore"]
[8,11071457,11071507,51,6,0.205192334952614,0.581585423133184,-0.376393088180569,-31.3332080910157,"CHG","8:11071248:11071688","CGI"]
[8,11370344,11370530,187,24,0.0492724919781541,0.215221751793012,-0.165949259814858,-159.425627703357,"CHG","8:11369473:11371473","CGI_shore"]
[8,11370344,11370530,187,24,0.0492724919781541,0.215221751793012,-0.165949259814858,-159.425627703357,"CHG","8:11369862:11371863","CGI_shore"]
[8,11403699,11403763,65,17,0.694374454808287,0.88164111761183,-0.187266662803543,-72.4927243111406,"CG","8:11402401:11405502","CGI"]
[8,11403699,11403763,65,17,0.694374454808287,0.88164111761183,-0.187266662803543,-72.4927243111406,"CG","Os08g0288000","promoter","Os08g0288000","Conserved hypothetical protein && - && -"]
[8,11403699,11403763,65,17,0.694374454808287,0.88164111761183,-0.187266662803543,-72.4927243111406,"CG","Os08g0287800","promoter","Os08g0287800","Hypothetical conserved gene && - && -"]
[8,11604505,11604565,61,24,0.0519779432203415,0.114985017736941,-0.063007074516599,-112.714204575237,"CHH","8:11603351:11605351","CGI_shore"]
[8,11604505,11604565,61,24,0.0519779432203415,0.114985017736941,-0.063007074516599,-112.714204575237,"CHH","8:11603990:11605991","CGI_shore"]
[8,11758150,11758232,83,15,0.475415919191158,0.712648671069278,-0.23723275187812,-71.5149616975966,"CG","Os08g0292900","promoter","HOMEOBOX45","Similar to Isoform 2 of Homeobox protein knotted-1-like 13 && sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica OX=39947 GN=OSH45 PE=2 SV=2 && PF03791:KNOX2 domain|PF05920:Homeobox KN domain"]
[8,11758150,11758232,83,15,0.475415919191158,0.712648671069278,-0.23723275187812,-71.5149616975966,"CG","8:11756799:11758799","CGI_shore"]
[8,11766788,11767015,228,11,0.313339227102581,0.703826419207042,-0.390487192104461,-51.1623901316161,"CHG","8:11765932:11767932","CGI_shore"]
[8,11772367,11772449,83,9,0.209504065024589,0.6320559202752,-0.422551855250612,-42.0167278977008,"CHG","8:11771314:11773315","CGI_shore"]
[8,11772367,11772449,83,9,0.209504065024589,0.6320559202752,-0.422551855250612,-42.0167278977008,"CHG","8:11772142:11774898","CGI"]
[8,11882323,11882425,103,21,0.0224422126407675,0.133643394363689,-0.111201181722921,-104.609195654074,"CHH","Os08g0295200","promoter","Os08g0295200","Conserved hypothetical protein && sp|Q9LJR3|SPA3_ARATH Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 && -"]
[8,11882323,11882425,103,21,0.0224422126407675,0.133643394363689,-0.111201181722921,-104.609195654074,"CHH","8:11881112:11883113","CGI_shore"]
[8,12128817,12128881,65,19,0.571651058932212,0.826642556584106,-0.254991497651894,-86.9493566091188,"CG","8:12128422:12130580","CGI"]
[8,12128828,12128924,97,15,0.232547509078002,0.576130323137585,-0.343582814059582,-65.9226366752685,"CHG","8:12128422:12130580","CGI"]
[8,12435456,12435536,81,10,0.247593665602992,0.71352064024593,-0.465926974642938,-47.1928356104482,"CHG","8:12433237:12440140","CGI"]
[8,12871243,12871406,164,40,0.478680537288327,0.655327272441909,-0.176646735153582,-178.166610326152,"CG","Os08g0307400","exon","Os08g0307400","Similar to Phosphatidylinositol 3-kinase 1 && sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform OS=Glycine max OX=3847 PE=2 SV=1 && -"]
[8,12871243,12871406,164,40,0.478680537288327,0.655327272441909,-0.176646735153582,-178.166610326152,"CG","8:12871241:12871927","CGI"]
[8,12871243,12871406,164,40,0.478680537288327,0.655327272441909,-0.176646735153582,-178.166610326152,"CG","Os08g0307400","utr5","Os08g0307400","Similar to Phosphatidylinositol 3-kinase 1 && sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform OS=Glycine max OX=3847 PE=2 SV=1 && -"]
[8,12871243,12871406,164,40,0.478680537288327,0.655327272441909,-0.176646735153582,-178.166610326152,"CG","Os08g0307400","intron","Os08g0307400","Similar to Phosphatidylinositol 3-kinase 1 && sp|P42347|PI3K1_SOYBN Phosphatidylinositol 3-kinase, root isoform OS=Glycine max OX=3847 PE=2 SV=1 && -"]
[8,12879764,12879957,194,47,0.760492342484191,0.882536200746221,-0.12204385826203,-199.643394097786,"CG","Os08g0307601","promoter","Os08g0307601","Similar to cDNA clone:002-114-B06, full insert sequence && - && -"]
[8,12879764,12879957,194,47,0.760492342484191,0.882536200746221,-0.12204385826203,-199.643394097786,"CG","8:12879578:12880300","CGI"]
[8,12879764,12879957,194,47,0.760492342484191,0.882536200746221,-0.12204385826203,-199.643394097786,"CG","Os08g0307601","TSS","Os08g0307601","Similar to cDNA clone:002-114-B06, full insert sequence && - && -"]
[8,12879764,12879957,194,47,0.760492342484191,0.882536200746221,-0.12204385826203,-199.643394097786,"CG","Os08g0307601","utr5","Os08g0307601","Similar to cDNA clone:002-114-B06, full insert sequence && - && -"]
[8,12879764,12879957,194,47,0.760492342484191,0.882536200746221,-0.12204385826203,-199.643394097786,"CG","Os08g0307601","exon","Os08g0307601","Similar to cDNA clone:002-114-B06, full insert sequence && - && -"]
[8,13572949,13573018,70,6,0.294658626158652,0.802799571325002,-0.50814094516635,-29.2671023115303,"CHG","8:13571305:13573306","CGI_shore"]
[8,13572949,13573018,70,6,0.294658626158652,0.802799571325002,-0.50814094516635,-29.2671023115303,"CHG","8:13572103:13574104","CGI_shore"]
[8,13572949,13573018,70,6,0.294658626158652,0.802799571325002,-0.50814094516635,-29.2671023115303,"CHG","8:13572977:13574977","CGI_shore"]
[8,13909949,13910025,77,8,0.150198217759178,0.483462378908213,-0.333264161149035,-39.2104084146571,"CHG","8:13909417:13911963","CGI"]
[8,15962919,15963015,97,23,0.199979525573409,0.505877236964099,-0.30589771139069,-121.767206107334,"CHG","8:15954293:15964849","CGI"]
[8,16196774,16196933,160,11,0.354743375027219,0.764352247650769,-0.40960887262355,-56.3602964693415,"CHG","8:16194889:16196890","CGI_shore"]
[8,16196774,16196933,160,11,0.354743375027219,0.764352247650769,-0.40960887262355,-56.3602964693415,"CHG","8:16195197:16198358","CGI"]
[8,16378752,16378871,120,34,0.112357344248149,0.26876283829942,-0.156405494051271,-164.317398625944,"CHH","8:16378558:16380559","CGI_shore"]
[8,16817051,16817390,340,47,0.270555917051142,0.507186947975281,-0.236631030924138,-297.001687563827,"CG","8:16816838:16823597","CGI"]
[8,16817195,16817294,100,14,0.0791949841369847,0.285111219002728,-0.205916234865743,-75.5026311661502,"CHG","8:16816838:16823597","CGI"]
[8,16965140,16965212,73,12,0.208334896951458,0.366532978898266,-0.158198081946807,-54.294885390463,"CG","Os08g0366000","exon","phosphoenolpyruvate carboxylase, phosphoenolpyruvate carboxylase 2a, PEPCase 2a","Phosphoenolpyruvate carboxylase && sp|P29194|CAPP2_SORBI Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor OX=4558 PE=3 SV=1 && PF00311:Phosphoenolpyruvate carboxylase"]
[8,16965140,16965212,73,12,0.208334896951458,0.366532978898266,-0.158198081946807,-54.294885390463,"CG","Os08g0366050","exon","Os08g0366050","Hypothetical protein && sp|P29194|CAPP2_SORBI Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor OX=4558 PE=3 SV=1 && -"]
[8,16965140,16965212,73,12,0.208334896951458,0.366532978898266,-0.158198081946807,-54.294885390463,"CG","Os08g0366050","utr5","Os08g0366050","Hypothetical protein && sp|P29194|CAPP2_SORBI Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor OX=4558 PE=3 SV=1 && -"]
[8,17400881,17400963,83,5,0.239090165217691,0.718244505586401,-0.47915434036871,-29.7998806980334,"CHG","8:17400915:17401174","CGI"]
[8,17400881,17400963,83,5,0.239090165217691,0.718244505586401,-0.47915434036871,-29.7998806980334,"CHG","8:17398914:17400914","CGI_shore"]
[8,17411513,17411605,93,27,0.143872242998711,0.395956768424526,-0.252084525425815,-129.381134845551,"CHG","8:17410090:17413901","CGI"]
[8,17660877,17660962,86,21,0.58630058296985,0.86772417558184,-0.28142359261199,-96.4358699312753,"CG","8:17659705:17661706","CGI_shore"]
[8,17660877,17660962,86,21,0.58630058296985,0.86772417558184,-0.28142359261199,-96.4358699312753,"CG","8:17660875:17661369","CGI"]
[8,17660877,17660962,86,21,0.58630058296985,0.86772417558184,-0.28142359261199,-96.4358699312753,"CG","8:17660509:17662510","CGI_shore"]
[8,17779238,17779298,61,6,0.177867106698228,0.522070169165166,-0.344203062466937,-26.4764063265575,"CHG","8:17778094:17780094","CGI_shore"]
[8,18056800,18056968,169,44,0.0372201394321068,0.12383419261032,-0.0866140531782131,-223.319607271382,"CHH","8:18056484:18058484","CGI_shore"]
[8,18128796,18129055,260,60,0.250204911402382,0.511655426299049,-0.261450514896667,-310.192322987156,"CG","8:18126836:18128836","CGI_shore"]
[8,18128796,18129055,260,60,0.250204911402382,0.511655426299049,-0.261450514896667,-310.192322987156,"CG","Os08g0384500","utr3","PLEIOTROPIC DRUG RESISTANCE 17","ABC transporter-like domain containing protein && sp|Q6YW62|AB44G_ORYSJ ABC transporter G family member 44 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG44 PE=2 SV=2 && PF00005:ABC transporter|PF01061:ABC-2 type transporter|PF08370:Plant PDR ABC transporter associated"]
[8,18128796,18129055,260,60,0.250204911402382,0.511655426299049,-0.261450514896667,-310.192322987156,"CG","Os08g0384500","exon","PLEIOTROPIC DRUG RESISTANCE 17","ABC transporter-like domain containing protein && sp|Q6YW62|AB44G_ORYSJ ABC transporter G family member 44 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG44 PE=2 SV=2 && PF00005:ABC transporter|PF01061:ABC-2 type transporter|PF08370:Plant PDR ABC transporter associated"]
[8,18128796,18129055,260,60,0.250204911402382,0.511655426299049,-0.261450514896667,-310.192322987156,"CG","8:18128837:18129937","CGI"]
[8,18141183,18141338,156,47,0.0156632187174035,0.154219326345705,-0.138556107628302,-265.395786541705,"CHH","8:18140914:18142914","CGI_shore"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","Os08g0387600","promoter","Os08g0387600","Hypothetical protein && - && -"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","Os08g0387500","promoter","Os08g0387500","Similar to Sulfated surface glycoprotein 185 precursor (SSG 185) && - && -"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","8:18312302:18314303","CGI_shore"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","8:18313936:18314640","CGI"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","Os08g0387600","TSS","Os08g0387600","Hypothetical protein && - && -"]
[8,18313941,18314035,95,31,0.606019377417494,0.861927272481771,-0.255907895064277,-142.964494293828,"CG","Os08g0387600","exon","Os08g0387600","Hypothetical protein && - && -"]
[8,18506835,18506975,141,24,0.669589076663817,0.881811536194818,-0.212222459531001,-128.686053184907,"CG","8:18506926:18508926","CGI_shore"]
[8,18872699,18872899,201,40,0.0275822515142137,0.333559498138758,-0.305977246624544,-253.932266886874,"CHH","8:18871086:18873087","CGI_shore"]
[8,18972121,18972268,148,22,0.33129711251829,0.738777023473279,-0.407479910954989,-102.790070380568,"CHG","8:18971143:18973144","CGI_shore"]
[8,18972121,18972268,148,22,0.33129711251829,0.738777023473279,-0.407479910954989,-102.790070380568,"CHG","8:18971610:18973610","CGI_shore"]
[8,18972121,18972268,148,22,0.33129711251829,0.738777023473279,-0.407479910954989,-102.790070380568,"CHG","8:18972006:18974007","CGI_shore"]
[8,19323872,19323922,51,25,0.0369466010160797,0.125055288607505,-0.0881086875914255,-113.805103798149,"CHH","Os08g0404500","promoter","Os08g0404500","C1-like domain containing protein && - && PF03107:C1 domain"]
[8,19323872,19323922,51,25,0.0369466010160797,0.125055288607505,-0.0881086875914255,-113.805103798149,"CHH","8:19323219:19325219","CGI_shore"]
[8,19357423,19357499,77,19,0.632818906354387,0.86033558184524,-0.227516675490853,-88.9188179475681,"CG","8:19356255:19358256","CGI_shore"]
[8,19357423,19357499,77,19,0.632818906354387,0.86033558184524,-0.227516675490853,-88.9188179475681,"CG","8:19356514:19358514","CGI_shore"]
[8,19357423,19357499,77,19,0.632818906354387,0.86033558184524,-0.227516675490853,-88.9188179475681,"CG","8:19357150:19357556","CGI"]
[8,19475636,19475707,72,7,0.182296377273398,0.677454479445448,-0.49515810217205,-33.6229629880994,"CHG","8:19474462:19476463","CGI_shore"]
[8,19596609,19596754,146,66,0.0681911685706164,0.22575440811687,-0.157563239546254,-292.975105114913,"CHH","8:19596130:19597116","CGI"]
[8,19596609,19596754,146,66,0.0681911685706164,0.22575440811687,-0.157563239546254,-292.975105114913,"CHH","8:19595190:19597191","CGI_shore"]
[8,19755910,19755967,58,15,0.680493215613919,0.745817702550054,-0.065324486936135,-51.5911429865848,"CG","Os08g0413050","promoter","Os08g0413050","Hypothetical protein && sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max OX=3847 GN=CDC48 PE=2 SV=1 && PF02933:Cell division protein 48 (CDC48), domain 2|PF00004:ATPase family associated with various cellular activities (AAA)|PF17862:AAA+ lid domain"]
[8,19821355,19821540,186,15,0.437464862398799,0.645733746902179,-0.208268884503379,-73.5381324168707,"CG","8:19819795:19821795","CGI_shore"]
[8,20059460,20059664,205,64,0.0750632864514689,0.233367938334494,-0.158304651883025,-309.759389426755,"CHH","8:20058681:20060681","CGI_shore"]
[8,20106245,20106401,157,26,0.424343705686117,0.730339164056136,-0.305995458370018,-107.657617525631,"CHG","8:20106082:20106290","CGI"]
[8,20106245,20106401,157,26,0.424343705686117,0.730339164056136,-0.305995458370018,-107.657617525631,"CHG","8:20106290:20108291","CGI_shore"]
[8,20125249,20125465,217,38,0.0223230462896053,0.194393304452419,-0.172070258162814,-196.294076429919,"CHH","8:20124382:20126383","CGI_shore"]
[8,20259918,20260010,93,7,0.112541536984693,0.275511349542215,-0.162969812557522,-31.8506101972037,"CG","8:20258892:20260892","CGI_shore"]
[8,20281208,20281351,144,14,0.0200390216892318,0.280693565370923,-0.260654543681691,-82.194283643586,"CHH","8:20279416:20281417","CGI_shore"]
[8,20281208,20281351,144,14,0.0200390216892318,0.280693565370923,-0.260654543681691,-82.194283643586,"CHH","8:20280589:20282590","CGI_shore"]
[8,20281208,20281351,144,14,0.0200390216892318,0.280693565370923,-0.260654543681691,-82.194283643586,"CHH","Os08g0423500","promoter","ALPHA-CARBONIC ANHYDRASE 3","Carbonic anhydrase, CAH1-like domain containing protein && sp|Q8L817|ATCA7_ARATH Alpha carbonic anhydrase 7 OS=Arabidopsis thaliana OX=3702 GN=ACA7 PE=2 SV=1 && PF00194:Eukaryotic-type carbonic anhydrase"]
[8,20281208,20281351,144,14,0.0200390216892318,0.280693565370923,-0.260654543681691,-82.194283643586,"CHH","8:20281088:20283088","CGI_shore"]
[8,20484551,20484606,56,14,0.0210680174630106,0.116724987661351,-0.0956569701983406,-71.4241428743405,"CHH","8:20483391:20485392","CGI_shore"]
[8,20497922,20498115,194,35,0.0174172007666888,0.173237621755876,-0.155820420989188,-219.481373703793,"CHH","8:20496105:20498106","CGI_shore"]
[8,20533637,20533720,84,17,0.668000225436291,0.868143375713419,-0.200143150277128,-92.5295776084517,"CG","Os08g0426866","intron","Os08g0426866","Similar to Kanadi1 && sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2 && -"]
[8,20533637,20533720,84,17,0.668000225436291,0.868143375713419,-0.200143150277128,-92.5295776084517,"CG","Os08g0427100","intron","Os08g0427100","Hypothetical conserved gene && sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2 && -"]
[8,20533637,20533720,84,17,0.668000225436291,0.868143375713419,-0.200143150277128,-92.5295776084517,"CG","8:20533540:20533873","CGI"]
[8,20966542,20966592,51,17,0.0523859352568382,0.193843062840931,-0.141457127584093,-70.1885134955407,"CHH","8:20966431:20966859","CGI"]
[8,21623198,21623307,110,20,0.476242170614764,0.774481447407286,-0.298239276792522,-91.3389434876016,"CHG","8:21621521:21623521","CGI_shore"]
[8,21645539,21645968,430,72,0.01859547200337,0.244702525901925,-0.226107053898555,-413.24785818522,"CHH","Os08g0444440","intron","Os08g0444440","Hypothetical conserved gene && - && -"]
[8,21645539,21645968,430,72,0.01859547200337,0.244702525901925,-0.226107053898555,-413.24785818522,"CHH","8:21645063:21647064","CGI_shore"]
[8,21774471,21774521,51,26,0.0352239111678298,0.183627740291972,-0.148403829124142,-157.708095106658,"CHH","8:21773520:21775521","CGI_shore"]
[8,22101472,22101542,71,20,0.0110268642821019,0.0772719853665438,-0.0662451210844418,-105.831650256912,"CHH","8:22100832:22101550","CGI"]
[8,22101472,22101542,71,20,0.0110268642821019,0.0772719853665438,-0.0662451210844418,-105.831650256912,"CHH","8:22100468:22102469","CGI_shore"]
[8,22101472,22101542,71,20,0.0110268642821019,0.0772719853665438,-0.0662451210844418,-105.831650256912,"CHH","8:22101462:22103462","CGI_shore"]
[8,22338102,22338287,186,34,0.0114114136207185,0.148383751720951,-0.136972338100233,-196.043330861207,"CHH","8:22336853:22338854","CGI_shore"]
[8,22529217,22529295,79,12,0.0543958820789561,0.14750751669276,-0.0931116346138044,-68.948472804291,"CHH","Os08g0459333","promoter","Os08g0459333","Hypothetical gene && - && -"]
[8,22529217,22529295,79,12,0.0543958820789561,0.14750751669276,-0.0931116346138044,-68.948472804291,"CHH","Os08g0459100","promoter","Os08g0459100","Leucine-rich repeat, cysteine-containing containing protein && - && -"]
[8,22529217,22529295,79,12,0.0543958820789561,0.14750751669276,-0.0931116346138044,-68.948472804291,"CHH","8:22529155:22531156","CGI_shore"]
[8,22820334,22820464,131,19,0.699092891027649,0.869580131694878,-0.170487240667229,-100.391580417166,"CG","8:22819820:22821820","CGI_shore"]
[8,22843648,22843750,103,20,0.0431266846893329,0.151273466523528,-0.108146781834195,-91.5920353820553,"CHH","8:22842773:22844774","CGI_shore"]
[8,22843648,22843750,103,20,0.0431266846893329,0.151273466523528,-0.108146781834195,-91.5920353820553,"CHH","8:22843593:22845593","CGI_shore"]
[8,23036294,23036448,155,28,0.0216200446331301,0.129784856233398,-0.108164811600268,-129.482234756154,"CHH","Os08g0468200","TES","Os08g0468200","Hypothetical protein && sp|P16081|NIA1_ORYSJ Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIA1 PE=2 SV=3 && PF00175:Oxidoreductase NAD-binding domain|PF00970:Oxidoreductase FAD-binding domain|PF00173:Cytochrome b5-like Heme/Steroid binding domain"]
[8,23036294,23036448,155,28,0.0216200446331301,0.129784856233398,-0.108164811600268,-129.482234756154,"CHH","Os08g0468200","utr3","Os08g0468200","Hypothetical protein && sp|P16081|NIA1_ORYSJ Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIA1 PE=2 SV=3 && PF00175:Oxidoreductase NAD-binding domain|PF00970:Oxidoreductase FAD-binding domain|PF00173:Cytochrome b5-like Heme/Steroid binding domain"]
[8,23036294,23036448,155,28,0.0216200446331301,0.129784856233398,-0.108164811600268,-129.482234756154,"CHH","Os08g0468200","exon","Os08g0468200","Hypothetical protein && sp|P16081|NIA1_ORYSJ Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIA1 PE=2 SV=3 && PF00175:Oxidoreductase NAD-binding domain|PF00970:Oxidoreductase FAD-binding domain|PF00173:Cytochrome b5-like Heme/Steroid binding domain"]
[8,23036294,23036448,155,28,0.0216200446331301,0.129784856233398,-0.108164811600268,-129.482234756154,"CHH","8:23033294:23041541","CGI"]
[8,23036294,23036448,155,28,0.0216200446331301,0.129784856233398,-0.108164811600268,-129.482234756154,"CHH","Os08g0468100","promoter","Rubisco activase, nitrate reductase apoenzyme 1, nitrate reductase 1, Nitrate reductase [NADH]1","Similar to Nitrate reductase && sp|P16081|NIA1_ORYSJ Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIA1 PE=2 SV=3 && PF00174:Oxidoreductase molybdopterin binding domain|PF00970:Oxidoreductase FAD-binding domain|PF00173:Cytochrome b5-like Heme/Steroid binding domain|PF03404:Mo-co oxidoreductase dimerisation domain|PF00175:Oxidoreductase NAD-binding domain"]
[8,23036294,23036448,155,28,0.0216200446331301,0.129784856233398,-0.108164811600268,-129.482234756154,"CHH","Os08g0468100","intron","Rubisco activase, nitrate reductase apoenzyme 1, nitrate reductase 1, Nitrate reductase [NADH]1","Similar to Nitrate reductase && sp|P16081|NIA1_ORYSJ Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NIA1 PE=2 SV=3 && PF00174:Oxidoreductase molybdopterin binding domain|PF00970:Oxidoreductase FAD-binding domain|PF00173:Cytochrome b5-like Heme/Steroid binding domain|PF03404:Mo-co oxidoreductase dimerisation domain|PF00175:Oxidoreductase NAD-binding domain"]
[8,23065096,23065185,90,30,0.00712489883589432,0.0590996945121787,-0.0519747956762843,-145.909412303735,"CHH","8:23063256:23065257","CGI_shore"]
[8,23065096,23065185,90,30,0.00712489883589432,0.0590996945121787,-0.0519747956762843,-145.909412303735,"CHH","Os08g0469000","promoter","Os08g0469000","Peptidase A1 domain containing protein && sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis OX=150966 GN=nep1 PE=1 SV=1 && PF14541:Xylanase inhibitor C-terminal|PF14543:Xylanase inhibitor N-terminal"]
[8,23065096,23065185,90,30,0.00712489883589432,0.0590996945121787,-0.0519747956762843,-145.909412303735,"CHH","8:23063661:23065661","CGI_shore"]
[8,23193380,23193623,244,52,0.0256434572073079,0.252562373319708,-0.2269189161124,-413.406586558828,"CHH","8:23192131:23195084","CGI"]
[8,23209173,23209299,127,46,0.0747568216748188,0.15950623937492,-0.0847494177001013,-223.792275190313,"CHH","8:23207939:23209940","CGI_shore"]
[8,23258194,23258261,68,11,0.282637026324375,0.468336198206148,-0.185699171881774,-41.6440327403408,"CHG","8:23250330:23264816","CGI"]
[8,23737308,23737403,96,19,0.0197934633545781,0.254215758854297,-0.234422295499719,-103.131509595827,"CHH","8:23737183:23739183","CGI_shore"]
[8,23792637,23792758,122,35,0.0138646172889576,0.130757448591099,-0.116892831302142,-194.719740652704,"CHH","Os08g0481300","promoter","Os08g0481300","Hypothetical protein && sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=PUB15 PE=2 SV=2 && -"]
[8,23792637,23792758,122,35,0.0138646172889576,0.130757448591099,-0.116892831302142,-194.719740652704,"CHH","8:23766353:23796462","CGI"]
[8,23869417,23869473,57,19,0.0599959277934159,0.14058868816283,-0.0805927603694144,-82.6573842849446,"CHH","8:23864115:23871200","CGI"]
[8,23964217,23964290,74,10,0.155104141949091,0.569664541344626,-0.414560399395534,-56.3707144961273,"CG","8:23963891:23965769","CGI"]
[8,23998323,23998402,80,16,0.00829762491477927,0.0952796523021662,-0.0869820273873869,-90.713454816348,"CHH","Os08g0485500","promoter","REGULATOR OF AWN ELONGATION 2","Epidermal patterning factor-like 1 (EPFL1) protein, Small secretary signal peptide, Regulation of awn elongation (Dysfunctional RAE2 protein), Regulation of grain number, grain length, and awn developmen && - && PF17181:Epidermal patterning factor proteins"]
[8,23998323,23998402,80,16,0.00829762491477927,0.0952796523021662,-0.0869820273873869,-90.713454816348,"CHH","8:23997005:23999005","CGI_shore"]
[8,24248940,24249080,141,47,0.0639942109562465,0.17963923221354,-0.115645021257294,-224.829132267633,"CHH","8:24248481:24250481","CGI_shore"]
[8,24248940,24249080,141,47,0.0639942109562465,0.17963923221354,-0.115645021257294,-224.829132267633,"CHH","8:24247451:24249452","CGI_shore"]
[8,24831653,24831788,136,17,0.401592237469872,0.633849438260568,-0.232257200790697,-83.4324833816092,"CG","Os08g0502700","promoter","Os08g0502700","Pyridoxal phosphate-dependent transferase, major region, subdomain 1 domain containing protein && sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana OX=3702 GN=AGT1 PE=1 SV=2 && PF00266:Aminotransferase class-V"]
[8,24831653,24831788,136,17,0.401592237469872,0.633849438260568,-0.232257200790697,-83.4324833816092,"CG","8:24830112:24832113","CGI_shore"]
[8,24996250,24996351,102,26,0.0328504564830447,0.204989653650196,-0.172139197167151,-142.617599009132,"CHH","8:24994478:24996616","CGI"]
[8,24996250,24996351,102,26,0.0328504564830447,0.204989653650196,-0.172139197167151,-142.617599009132,"CHH","8:24995800:24997800","CGI_shore"]
[8,25066133,25066273,141,34,0.0286937910643743,0.262576348148569,-0.233882557084195,-152.14720636415,"CHH","8:25064569:25066569","CGI_shore"]
[8,25066133,25066273,141,34,0.0286937910643743,0.262576348148569,-0.233882557084195,-152.14720636415,"CHH","Os08g0506500","intron","Os08g0506500","Similar to tRNA/rRNA methyltransferase (SpoU) family protein && sp|Q0BBL1|TRML_BURCM tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) OX=339670 GN=trmL PE=3 SV=2 && PF00588:SpoU rRNA Methylase family"]
[8,25276783,25277164,382,124,0.0582051340050983,0.158877444600386,-0.100672310595288,-686.965625596779,"CHH","Os08g0509600","intron","WEALTHY FARMER'S PANICLE","Squamosa promter-binding-like transcription activator, Regulation of branching in panicles and vegetative shoots, Semidominant regulator of plant architectur && sp|Q7EXZ2|SPL14_ORYSJ Squamosa promoter-binding-like protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL14 PE=2 SV=1 && PF03110:SBP domain"]
[8,25276783,25277164,382,124,0.0582051340050983,0.158877444600386,-0.100672310595288,-686.965625596779,"CHH","8:25276144:25278144","CGI_shore"]
[8,25312052,25312179,128,13,0.163484222681838,0.463133474612376,-0.299649251930538,-77.3347326047766,"CHG","Os08g0510300","promoter","HIGH-AFFINITY POTASSIUM(K+) TRANSPORTER 26","Potassium uptake protein, kup domain containing protein && sp|Q84YJ9|HAK26_ORYSJ Potassium transporter 26 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK26 PE=2 SV=1 && PF02705:K+ potassium transporter"]
[8,25312052,25312179,128,13,0.163484222681838,0.463133474612376,-0.299649251930538,-77.3347326047766,"CHG","8:25311622:25313622","CGI_shore"]
[8,25312052,25312179,128,13,0.163484222681838,0.463133474612376,-0.299649251930538,-77.3347326047766,"CHG","Os08g0510101","promoter","Os08g0510101","Similar to polygalacturonase inhibitor 1 && sp|Q9M5J9|PGIP1_ARATH Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=PGIP1 PE=1 SV=1 && -"]
[8,25433037,25433111,75,23,0.0506141718027864,0.11580192320943,-0.0651877514066441,-109.609670444465,"CHH","Os08g0512900","promoter","Os08g0512900","Conserved hypothetical protein && - && -"]
[8,25433037,25433111,75,23,0.0506141718027864,0.11580192320943,-0.0651877514066441,-109.609670444465,"CHH","8:25432478:25434734","CGI"]
[8,25947718,25947901,184,24,0.195453430227115,0.453144981702924,-0.257691551475809,-153.721039863998,"CG","8:25945804:25947805","CGI_shore"]
[8,25947718,25947901,184,24,0.195453430227115,0.453144981702924,-0.257691551475809,-153.721039863998,"CG","8:25947613:25949614","CGI_shore"]
[8,25947718,25947901,184,24,0.195453430227115,0.453144981702924,-0.257691551475809,-153.721039863998,"CG","Target=RETROFIT_I-int:1-611;Class=LTR/Copia","repeat"]
[8,26072457,26072894,438,38,0.347761025518001,0.603799997533287,-0.256038972015286,-227.129286113616,"CG","8:26071979:26073979","CGI_shore"]
[8,26072457,26072894,438,38,0.347761025518001,0.603799997533287,-0.256038972015286,-227.129286113616,"CG","Os08g0524200","exon","Os08g0524200","Uncharacterised conserved protein UCP037471 domain containing protein && sp|Q9LSE7|B561C_ARATH Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana OX=3702 GN=At3g25290 PE=2 SV=1 && PF03188:Eukaryotic cytochrome b561|PF04526:Protein of unknown function (DUF568)"]
[8,26072457,26072894,438,38,0.347761025518001,0.603799997533287,-0.256038972015286,-227.129286113616,"CG","Os08g0524200","intron","Os08g0524200","Uncharacterised conserved protein UCP037471 domain containing protein && sp|Q9LSE7|B561C_ARATH Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana OX=3702 GN=At3g25290 PE=2 SV=1 && PF03188:Eukaryotic cytochrome b561|PF04526:Protein of unknown function (DUF568)"]
[8,26104352,26104637,286,21,0.365627613429739,0.690019645572748,-0.324392032143009,-151.811438516981,"CG","8:26103851:26105852","CGI_shore"]
[8,26104352,26104637,286,21,0.365627613429739,0.690019645572748,-0.324392032143009,-151.811438516981,"CG","Os08g0524800","intron","basic helix-loop-helix protein 091","Similar to TA1 protein (Fragment) && sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana OX=3702 GN=BHLH62 PE=2 SV=1 && PF00010:Helix-loop-helix DNA-binding domain"]
[8,26104352,26104637,286,21,0.365627613429739,0.690019645572748,-0.324392032143009,-151.811438516981,"CG","Os08g0524800","exon","basic helix-loop-helix protein 091","Similar to TA1 protein (Fragment) && sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana OX=3702 GN=BHLH62 PE=2 SV=1 && PF00010:Helix-loop-helix DNA-binding domain"]
[8,26180701,26180830,130,21,0.299654775331362,0.504051472777272,-0.20439669744591,-104.952031758114,"CHG","Os08g0526300","exon","Os08g0526300","Similar to cDNA clone:001-038-D09, full insert sequence && sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGRL1A PE=1 SV=1 && -"]
[8,26180701,26180830,130,21,0.299654775331362,0.504051472777272,-0.20439669744591,-104.952031758114,"CHG","Os08g0526300","intron","Os08g0526300","Similar to cDNA clone:001-038-D09, full insert sequence && sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGRL1A PE=1 SV=1 && -"]
[8,26180701,26180830,130,21,0.299654775331362,0.504051472777272,-0.20439669744591,-104.952031758114,"CHG","Os08g0526300","utr3","Os08g0526300","Similar to cDNA clone:001-038-D09, full insert sequence && sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGRL1A PE=1 SV=1 && -"]
[8,26716077,26716223,147,25,0.309428805064686,0.555357551488051,-0.245928746423364,-122.203626633076,"CHG","Os08g0535100","exon","Os08g0535100","Conserved hypothetical protein && - && -"]
[8,26716077,26716223,147,25,0.309428805064686,0.555357551488051,-0.245928746423364,-122.203626633076,"CHG","8:26715435:26716370","CGI"]
[8,26716077,26716223,147,25,0.309428805064686,0.555357551488051,-0.245928746423364,-122.203626633076,"CHG","8:26715807:26717807","CGI_shore"]
[8,26716077,26716223,147,25,0.309428805064686,0.555357551488051,-0.245928746423364,-122.203626633076,"CHG","Os08g0535150","exon","Os08g0535150","Hypothetical protein && - && PF12274:Protein of unknown function (DUF3615)"]
[8,26716077,26716223,147,25,0.309428805064686,0.555357551488051,-0.245928746423364,-122.203626633076,"CHG","Os08g0535150","utr3","Os08g0535150","Hypothetical protein && - && PF12274:Protein of unknown function (DUF3615)"]
[8,26716077,26716223,147,25,0.309428805064686,0.555357551488051,-0.245928746423364,-122.203626633076,"CHG","Os08g0535150","TES","Os08g0535150","Hypothetical protein && - && PF12274:Protein of unknown function (DUF3615)"]
[8,26722966,26723324,359,82,0.15291990657781,0.548965243627092,-0.396045337049282,-909.890909073683,"CG","8:26718746:26727385","CGI"]
[8,26722971,26723309,339,50,0.0612310127384443,0.32618206207068,-0.264951049332236,-347.707619846923,"CHG","8:26718746:26727385","CGI"]
[8,26723006,26723132,127,54,0.032566478789014,0.121026073011287,-0.0884595942222735,-259.712250102186,"CHH","8:26718746:26727385","CGI"]
[8,26723197,26723269,73,20,0.0238300723352125,0.112626569118192,-0.0887964967829796,-95.4973740103368,"CHH","8:26718746:26727385","CGI"]
[8,26794719,26794792,74,8,0.642325984789017,0.848139053687289,-0.205813068898272,-36.8175889046901,"CG","8:26793737:26795738","CGI_shore"]
[8,26794719,26794792,74,8,0.642325984789017,0.848139053687289,-0.205813068898272,-36.8175889046901,"CG","Os08g0536300","intron","B-box-containing protein 26, CCT domain-containing gene 30, CCT (CO, CO-LIKE and TOC1) domain protein 30, CCT domain protein 30","Similar to Hd1 && sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE=1 SV=2 && PF06203:CCT motif"]
[8,26794719,26794792,74,8,0.642325984789017,0.848139053687289,-0.205813068898272,-36.8175889046901,"CG","8:26794181:26796181","CGI_shore"]
[8,26794719,26794792,74,8,0.642325984789017,0.848139053687289,-0.205813068898272,-36.8175889046901,"CG","Os08g0536300","exon","B-box-containing protein 26, CCT domain-containing gene 30, CCT (CO, CO-LIKE and TOC1) domain protein 30, CCT domain protein 30","Similar to Hd1 && sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE=1 SV=2 && PF06203:CCT motif"]
[8,26889553,26889678,126,9,0.518953956085577,0.772957058230886,-0.254003102145309,-47.604873639174,"CG","8:26888554:26890555","CGI_shore"]
[8,26889553,26889678,126,9,0.518953956085577,0.772957058230886,-0.254003102145309,-47.604873639174,"CG","Os08g0537900","intron","ETHYLENE RESPONSE FACTOR 106","Similar to predicted protein && sp|Q8RY81|OFT13_ARATH O-fucosyltransferase 13 OS=Arabidopsis thaliana OX=3702 GN=OFUT13 PE=2 SV=1 && PF10250:GDP-fucose protein O-fucosyltransferase"]
[8,27034302,27034413,112,14,0.178892234294635,0.448033156250096,-0.269140921955461,-77.2805306395939,"CG","8:27032357:27034358","CGI_shore"]
[8,27034302,27034413,112,14,0.178892234294635,0.448033156250096,-0.269140921955461,-77.2805306395939,"CG","Os08g0540100","promoter","Os08g0540100","Similar to Biotin synthase (EC 2.8.1.6) (Biotin synthetase) && sp|P54967|BIOB_ARATH Biotin synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BIO2 PE=1 SV=1 && PF06968:Biotin and Thiamin Synthesis associated domain|PF04055:Radical SAM superfamily"]
[8,27034302,27034413,112,14,0.178892234294635,0.448033156250096,-0.269140921955461,-77.2805306395939,"CG","8:27032975:27034975","CGI_shore"]
[8,27137555,27137900,346,101,0.180390096274981,0.332076880293783,-0.151686784018802,-685.54977276525,"CG","8:27136861:27137994","CGI"]
[8,27137555,27137900,346,101,0.180390096274981,0.332076880293783,-0.151686784018802,-685.54977276525,"CG","Os08g0542500","exon","Os08g0542500","Conserved hypothetical protein && - && -"]
[8,27137555,27137900,346,101,0.180390096274981,0.332076880293783,-0.151686784018802,-685.54977276525,"CG","Os08g0542500","utr3","Os08g0542500","Conserved hypothetical protein && - && -"]
[9,64681,64734,54,13,0.596861203899544,0.841906338681624,-0.24504513478208,-57.4877782147875,"CG","9:1089:92951","CGI"]
[9,408766,408881,116,38,0.617955763095212,0.828668836193895,-0.210713073098683,-201.940613786366,"CG","9:407882:409200","CGI"]
[9,408766,408881,116,38,0.617955763095212,0.828668836193895,-0.210713073098683,-201.940613786366,"CG","9:408316:410316","CGI_shore"]
[9,408766,408881,116,38,0.617955763095212,0.828668836193895,-0.210713073098683,-201.940613786366,"CG","Os09g0103100","promoter","Os09g0103100","Similar to predicted protein && sp|Q71DJ5|LIP1_ARATH Triacylglycerol lipase 1 OS=Arabidopsis thaliana OX=3702 GN=LIP1 PE=1 SV=1 && PF04083:Partial alpha/beta-hydrolase lipase region"]
[9,598808,598871,64,5,0.257736314002693,0.619602054196315,-0.361865740193622,-21.9167903071534,"CHG","9:597092:599092","CGI_shore"]
[9,834599,834706,108,25,0.0290977225434864,0.170736210676988,-0.141638488133501,-123.736911892686,"CHH","9:833767:835767","CGI_shore"]
[9,958474,958550,77,9,0.092795794589253,0.428408536887617,-0.335612742298364,-57.4475037171347,"CHG","9:958087:960088","CGI_shore"]
[9,958474,958550,77,9,0.092795794589253,0.428408536887617,-0.335612742298364,-57.4475037171347,"CHG","9:958334:958638","CGI"]
[9,1003535,1003645,111,28,0.574210836849561,0.804037051208604,-0.229826214359043,-130.557790915983,"CG","9:1001320:1004005","CGI"]
[9,1003535,1003645,111,28,0.574210836849561,0.804037051208604,-0.229826214359043,-130.557790915983,"CG","Os09g0112100","exon","Os09g0112100","Hypothetical protein && - && -"]
[9,1003535,1003645,111,28,0.574210836849561,0.804037051208604,-0.229826214359043,-130.557790915983,"CG","9:1002720:1004720","CGI_shore"]
[9,1003535,1003645,111,28,0.574210836849561,0.804037051208604,-0.229826214359043,-130.557790915983,"CG","Os09g0112100","promoter","Os09g0112100","Hypothetical protein && - && -"]
[9,1003535,1003645,111,28,0.574210836849561,0.804037051208604,-0.229826214359043,-130.557790915983,"CG","Os09g0112100","utr5","Os09g0112100","Hypothetical protein && - && -"]
[9,1003735,1003864,130,39,0.607666022927938,0.852781009883088,-0.24511498695515,-209.482836291031,"CG","9:1001320:1004005","CGI"]
[9,1003735,1003864,130,39,0.607666022927938,0.852781009883088,-0.24511498695515,-209.482836291031,"CG","Os09g0112100","exon","Os09g0112100","Hypothetical protein && - && -"]
[9,1003735,1003864,130,39,0.607666022927938,0.852781009883088,-0.24511498695515,-209.482836291031,"CG","9:1002720:1004720","CGI_shore"]
[9,1003735,1003864,130,39,0.607666022927938,0.852781009883088,-0.24511498695515,-209.482836291031,"CG","Os09g0112100","promoter","Os09g0112100","Hypothetical protein && - && -"]
[9,1003735,1003864,130,39,0.607666022927938,0.852781009883088,-0.24511498695515,-209.482836291031,"CG","Os09g0112100","utr5","Os09g0112100","Hypothetical protein && - && -"]
[9,1228843,1228907,65,22,0.0626431911540734,0.203070905721604,-0.14042771456753,-98.8449917476129,"CHH","Os09g0115600","intron","Os09g0115600","PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein && sp|Q93XX5|Y5713_ARATH PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana OX=3702 GN=At5g67130 PE=1 SV=1 && -"]
[9,1228843,1228907,65,22,0.0626431911540734,0.203070905721604,-0.14042771456753,-98.8449917476129,"CHH","9:1228576:1235339","CGI"]
[9,1389082,1389185,104,26,0.029896729862192,0.141757739009373,-0.111861009147181,-125.533933251919,"CHH","9:1388266:1390266","CGI_shore"]
[9,1389082,1389185,104,26,0.029896729862192,0.141757739009373,-0.111861009147181,-125.533933251919,"CHH","9:1388601:1389159","CGI"]
[9,1389082,1389185,104,26,0.029896729862192,0.141757739009373,-0.111861009147181,-125.533933251919,"CHH","9:1389159:1391160","CGI_shore"]
[9,1601244,1601300,57,4,0.317981022301851,0.742286717404833,-0.424305695102982,-23.5421113921205,"CHG","9:1601201:1601442","CGI"]
[9,1670969,1671055,87,9,0.0146741160807862,0.129298519293084,-0.114624403212298,-33.0794943212309,"CHG","9:1669148:1671149","CGI_shore"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","9:1889451:1891452","CGI_shore"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","9:1890015:1892015","CGI_shore"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","Os09g0124566","exon","Os09g0124566","Hypothetical gene && - && -"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","9:1890142:1890495","CGI"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","Os09g0124800","promoter","Os09g0124800","Tetratricopeptide-like helical domain containing protein && sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum OX=44689 GN=sti1 PE=3 SV=1 && PF12796:Ankyrin repeats (3 copies)|PF13637:Ankyrin repeats (many copies)"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","Os09g0124566","utr5","Os09g0124566","Hypothetical gene && - && -"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","Os09g0124566","TSS","Os09g0124566","Hypothetical gene && - && -"]
[9,1890323,1890456,134,49,0.0377549704143388,0.226170390381506,-0.188415419967167,-223.183788556115,"CHH","Os09g0124566","promoter","Os09g0124566","Hypothetical gene && - && -"]
[9,2206253,2206319,67,14,0.376674593781816,0.64169892911195,-0.265024335330134,-54.1577792793694,"CHG","9:2205271:2207272","CGI_shore"]
[9,2206253,2206319,67,14,0.376674593781816,0.64169892911195,-0.265024335330134,-54.1577792793694,"CHG","9:2206211:2206708","CGI"]
[9,2206274,2206411,138,23,0.593566376057546,0.8217398467134,-0.228173470655854,-95.0803074564938,"CG","9:2205271:2207272","CGI_shore"]
[9,2206274,2206411,138,23,0.593566376057546,0.8217398467134,-0.228173470655854,-95.0803074564938,"CG","9:2206211:2206708","CGI"]
[9,2630885,2630997,113,47,0.56054010580641,0.755455452694966,-0.194915346888556,-220.399623583332,"CG","9:2630043:2632043","CGI_shore"]
[9,2630885,2630997,113,47,0.56054010580641,0.755455452694966,-0.194915346888556,-220.399623583332,"CG","9:2621157:2631323","CGI"]
[9,2685270,2685328,59,26,0.0271211026520203,0.226200052068462,-0.199078949416442,-128.946544060687,"CHH","Os09g0135400","promoter","Os09g0135400","Similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein && sp|O48802|PHOX2_ARATH Protein CLMP1 OS=Arabidopsis thaliana OX=3702 GN=CLMP1 PE=1 SV=1 && PF00564:PB1 domain"]
[9,2685270,2685328,59,26,0.0271211026520203,0.226200052068462,-0.199078949416442,-128.946544060687,"CHH","9:2684785:2686459","CGI"]
[9,3151705,3151789,85,27,0.706177844086599,0.864547709121048,-0.158369865034448,-114.816381600705,"CG","9:3151364:3152262","CGI"]
[9,3381262,3381379,118,18,0.112659251156747,0.320051725966285,-0.207392474809537,-97.7475854407787,"CHG","9:3379265:3381265","CGI_shore"]
[9,3381262,3381379,118,18,0.112659251156747,0.320051725966285,-0.207392474809537,-97.7475854407787,"CHG","9:3381266:3381617","CGI"]
[9,3381267,3381369,103,32,0.183917187110544,0.502160484269327,-0.318243297158783,-254.425402053907,"CG","9:3381266:3381617","CGI"]
[9,3665671,3665782,112,10,0.363945501179426,0.639102532781176,-0.27515703160175,-52.694652585257,"CHG","Os09g0248200","promoter","Os09g0248200","Similar to ABI3-interacting protein 2 && sp|Q67ZB3|FRL3_ARATH FRIGIDA-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=FRL3 PE=1 SV=1 && PF07899:Frigida-like protein"]
[9,3665671,3665782,112,10,0.363945501179426,0.639102532781176,-0.27515703160175,-52.694652585257,"CHG","9:3665411:3667412","CGI_shore"]
[9,4629515,4629995,481,125,0.193990609096593,0.340379703263436,-0.146389094166843,-654.054073227813,"CG","9:4628705:4630735","CGI"]
[9,4629730,4629894,165,32,0.0939571581199753,0.223849187118315,-0.12989202899834,-164.926673827061,"CHG","9:4628705:4630735","CGI"]
[9,4704925,4704979,55,5,0.0409001747914664,0.0791889998191026,-0.0382888250276361,-21.7372822987127,"CG","Os09g0263474","exon","Os09g0263474","Conserved hypothetical protein && - && -"]
[9,4706932,4706998,67,9,0.0256842014629022,0.0535868604260473,-0.0279026589631451,-33.085617966859,"CG","Os09g0263474","promoter","Os09g0263474","Conserved hypothetical protein && - && -"]
[9,4893191,4893507,317,52,0.0605733582650793,0.277929616190797,-0.217356257925718,-328.943539050671,"CG","9:4892905:4894905","CGI_shore"]
[9,4893191,4893507,317,52,0.0605733582650793,0.277929616190797,-0.217356257925718,-328.943539050671,"CG","9:4892985:4893763","CGI"]
[9,5125973,5126122,150,21,0.16020002955938,0.422658671438822,-0.262458641879442,-111.392651925261,"CHG","Os09g0268100","exon","Os09g0268100","Similar to lectin-like receptor kinase 7 && sp|Q7XUN6|SIT2_ORYSJ L-type lectin-domain containing receptor kinase SIT2 OS=Oryza sativa subsp. japonica OX=39947 GN=SIT2 PE=2 SV=2 && -"]
[9,5274907,5275124,218,48,0.0930867031965125,0.32477077445486,-0.231684071258347,-252.081257277206,"CHH","Os09g0270700","promoter","Os09g0270700","Disease resistance protein domain containing protein && sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1 && PF00931:NB-ARC domain|PF13855:Leucine rich repeat"]
[9,5710403,5710471,69,7,0.640074612923914,0.85434515299826,-0.214270540074346,-28.7951870007451,"CHG","9:5709174:5711175","CGI_shore"]
[9,5788034,5788094,61,9,0.653216121574575,0.851263122580204,-0.198047001005629,-43.1289692706166,"CG","9:5787100:5789101","CGI_shore"]
[9,5788034,5788094,61,9,0.653216121574575,0.851263122580204,-0.198047001005629,-43.1289692706166,"CG","9:5787637:5790393","CGI"]
[9,5788034,5788094,61,9,0.653216121574575,0.851263122580204,-0.198047001005629,-43.1289692706166,"CG","Os09g0278000","promoter","Os09g0278000","Hypothetical conserved gene && - && PF03760:Late embryogenesis abundant (LEA) group 1"]
[9,6218635,6218729,95,24,0.0305129102033821,0.141396032047628,-0.110883121844246,-116.126392173554,"CHH","9:6217428:6219429","CGI_shore"]
[9,6367615,6367702,88,15,0.014842802419097,0.121411505356726,-0.106568702937629,-80.0478444987306,"CHH","9:6365664:6367665","CGI_shore"]
[9,6742274,6742338,65,28,0.0613875666426919,0.239753533652285,-0.178365967009593,-137.762350085676,"CHH","9:6740426:6742426","CGI_shore"]
[9,6742274,6742338,65,28,0.0613875666426919,0.239753533652285,-0.178365967009593,-137.762350085676,"CHH","9:6741966:6743966","CGI_shore"]
[9,7166173,7166242,70,7,0.696728293136165,0.920509736439926,-0.223781443303761,-30.1333839469664,"CG","9:7164452:7166452","CGI_shore"]
[9,7166173,7166242,70,7,0.696728293136165,0.920509736439926,-0.223781443303761,-30.1333839469664,"CG","Os09g0296400","promoter","Os09g0296400","Similar to predicted protein && - && -"]
[9,7238688,7238760,73,25,0.183213549492253,0.469042967515611,-0.285829418023359,-195.888345634536,"CHH","Os09g0298100","promoter","pyrophosphate-fructose-6-phosphatephosphotransferase  alpha subunit 4, PFP-alpha subunit 4","Similar to predicted protein && sp|Q41140|PFPA_RICCO Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis OX=3988 GN=PFP-ALPHA PE=3 SV=1 && PF00365:Phosphofructokinase"]
[9,7240621,7240716,96,15,0.433523264845982,0.670064047499782,-0.2365407826538,-65.7410478281265,"CG","Os09g0298100","exon","pyrophosphate-fructose-6-phosphatephosphotransferase  alpha subunit 4, PFP-alpha subunit 4","Similar to predicted protein && sp|Q41140|PFPA_RICCO Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis OX=3988 GN=PFP-ALPHA PE=3 SV=1 && PF00365:Phosphofructokinase"]
[9,7289342,7289456,115,16,0.528005443638026,0.821693348917618,-0.293687905279592,-94.6658518148966,"CG","9:7288286:7290286","CGI_shore"]
[9,7818830,7818935,106,13,0.232159003652176,0.550576368107555,-0.318417364455379,-54.9944018659127,"CHG","9:7818338:7820339","CGI_shore"]
[9,8196369,8196440,72,14,0.0878665626084447,0.309733500734026,-0.221866938125581,-69.5891511511257,"CG","9:8195137:8197138","CGI_shore"]
[9,8561118,8561174,57,4,0.0692715107539367,0.220651015564538,-0.151379504810602,-18.2938176246896,"CHG","9:8559167:8561168","CGI_shore"]
[9,8718142,8718295,154,37,0.106132787563684,0.45893389073359,-0.352801103169907,-243.307727463463,"CG","9:8716364:8720759","CGI"]
[9,8718142,8718295,154,37,0.106132787563684,0.45893389073359,-0.352801103169907,-243.307727463463,"CG","Os09g0315800","promoter","Os09g0315800","Phosphotransferase system, HPr serine phosphorylation site domain containing protein && sp|Q9H2M9|RBGPR_HUMAN Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens OX=9606 GN=RAB3GAP2 PE=1 SV=1 && PF14655:Rab3 GTPase-activating protein regulatory subunit N-terminus"]
[9,9211214,9211332,119,23,0.249849559345526,0.516828438829694,-0.266978879484168,-114.759780583609,"CG","Os09g0320400","exon","Os09g0320400","Similar to Permease && sp|Q94C70|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana OX=3702 GN=NAT2 PE=2 SV=2 && PF00860:Permease family"]
[9,9211214,9211332,119,23,0.249849559345526,0.516828438829694,-0.266978879484168,-114.759780583609,"CG","Os09g0320400","utr3","Os09g0320400","Similar to Permease && sp|Q94C70|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana OX=3702 GN=NAT2 PE=2 SV=2 && PF00860:Permease family"]
[9,9211214,9211332,119,23,0.249849559345526,0.516828438829694,-0.266978879484168,-114.759780583609,"CG","Os09g0320201","exon","Os09g0320201","Hypothetical protein && sp|Q94C70|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana OX=3702 GN=NAT2 PE=2 SV=2 && -"]
[9,9828896,9828966,71,11,0.226758702769422,0.422876501421435,-0.196117798652013,-63.0772333838153,"CG","9:9826209:9832245","CGI"]
[9,9828896,9828966,71,11,0.226758702769422,0.422876501421435,-0.196117798652013,-63.0772333838153,"CG","Os09g0330000","intron","Os09g0330000","UDP-glucuronosyl/UDP-glucosyltransferase family protein && sp|Q9ZVX4|U90A1_ARATH UDP-glycosyltransferase 90A1 OS=Arabidopsis thaliana OX=3702 GN=UGT90A1 PE=2 SV=1 && PF00201:UDP-glucoronosyl and UDP-glucosyl transferase"]
[9,9960995,9961057,63,16,0.0187653440460133,0.0721911646835557,-0.0534258206375424,-70.8035945312101,"CHH","9:9959500:9961501","CGI_shore"]
[9,10079112,10079202,91,30,0.0345823641749008,0.114059950039227,-0.079477585864326,-143.566014854669,"CHH","9:10077202:10079203","CGI_shore"]
[9,10079112,10079202,91,30,0.0345823641749008,0.114059950039227,-0.079477585864326,-143.566014854669,"CHH","9:10078494:10080048","CGI"]
[9,10079112,10079202,91,30,0.0345823641749008,0.114059950039227,-0.079477585864326,-143.566014854669,"CHH","Os09g0333600","intron","Os09g0333600","Similar to PDR-like ABC transporter (PDR4 ABC transporter) && sp|B9G300|AB52G_ORYSJ ABC transporter G family member 52 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG52 PE=2 SV=2 && -"]
[9,10131728,10131815,88,13,0.565295300134274,0.77471328458701,-0.209417984452736,-58.593018354393,"CG","9:10130718:10132719","CGI_shore"]
[9,10131728,10131815,88,13,0.565295300134274,0.77471328458701,-0.209417984452736,-58.593018354393,"CG","Os09g0334600","exon","Os09g0334600","Similar to Cytochrome b5 && sp|O22704|CYP5F_ARATH Cytochrome B5-like protein OS=Arabidopsis thaliana OX=3702 GN=CB5LP PE=2 SV=1 && -"]
[9,10131728,10131815,88,13,0.565295300134274,0.77471328458701,-0.209417984452736,-58.593018354393,"CG","Os09g0334600","intron","Os09g0334600","Similar to Cytochrome b5 && sp|O22704|CYP5F_ARATH Cytochrome B5-like protein OS=Arabidopsis thaliana OX=3702 GN=CB5LP PE=2 SV=1 && -"]
[9,10470591,10470693,103,24,0.0142027247810766,0.100092242009021,-0.0858895172279448,-115.27119173439,"CHH","9:10469790:10471790","CGI_shore"]
[9,10470591,10470693,103,24,0.0142027247810766,0.100092242009021,-0.0858895172279448,-115.27119173439,"CHH","Target=(TAGA)n:1-53;Class=Simple_repeat","repeat"]
[9,10470591,10470693,103,24,0.0142027247810766,0.100092242009021,-0.0858895172279448,-115.27119173439,"CHH","9:10468882:10470882","CGI_shore"]
[9,10487711,10487819,109,23,0.411353974925958,0.632640328484699,-0.221286353558741,-109.300360863014,"CG","9:10486435:10488436","CGI_shore"]
[9,10487711,10487819,109,23,0.411353974925958,0.632640328484699,-0.221286353558741,-109.300360863014,"CG","9:10487303:10487950","CGI"]
[9,10816141,10816226,86,21,0.0137778303384932,0.228699790906324,-0.214921960567831,-101.650223588351,"CHH","9:10814661:10816662","CGI_shore"]
[9,10975950,10976004,55,17,0.795132760291292,0.883253605579436,-0.0881208452881439,-76.273483789406,"CG","Target=(CGG)n:3-162;Class=Simple_repeat","repeat"]
[9,11250785,11250911,127,35,0.651522408163228,0.865306987642997,-0.21378457947977,-159.813900525356,"CG","9:11250453:11257551","CGI"]
[9,11263115,11263275,161,36,0.011933247929044,0.108509165735581,-0.096575917806537,-174.692573044213,"CHH","Os09g0353200","intron","Os09g0353200","Protein kinase, catalytic domain domain containing protein && sp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana OX=3702 GN=At1g51880 PE=2 SV=1 && PF07714:Protein tyrosine kinase|PF12819:Malectin-like domain"]
[9,11914902,11914964,63,15,0.0221193737044951,0.0839758755246497,-0.0618565018201546,-69.2679936821038,"CHH","9:11914039:11916039","CGI_shore"]
[9,11914902,11914964,63,15,0.0221193737044951,0.0839758755246497,-0.0618565018201546,-69.2679936821038,"CHH","Os09g0363700","intron","Os09g0363700","Conserved hypothetical protein && - && -"]
[9,11914902,11914964,63,15,0.0221193737044951,0.0839758755246497,-0.0618565018201546,-69.2679936821038,"CHH","Os09g0363800","promoter","Os09g0363800","Similar to metallo-beta-lactamase family protein && sp|O74545|YCV6_SCHPO Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC777.06c PE=4 SV=1 && PF12706:Beta-lactamase superfamily domain"]
[9,12098621,12098822,202,40,0.0580433190442463,0.251965399020707,-0.19392207997646,-189.680985877431,"CHH","9:12097944:12099944","CGI_shore"]
[9,12211603,12211654,52,6,0.105857152693676,0.279326211807349,-0.173469059113673,-27.948249712848,"CHG","9:12209615:12211616","CGI_shore"]
[9,12764160,12764266,107,27,0.0218740189867277,0.196966054666551,-0.175092035679823,-134.360471563545,"CHH","9:12763472:12765472","CGI_shore"]
[9,13168809,13168937,129,25,0.138143670319988,0.354621060503492,-0.216477390183504,-176.539534969233,"CHH","9:13167450:13169451","CGI_shore"]
[9,13845231,13845290,60,13,0.233441732125458,0.366576497822532,-0.133134765697075,-51.5867189248661,"CG","9:13844250:13845848","CGI"]
[9,13854589,13854861,273,42,0.0233921956109166,0.296902817379013,-0.273510621768096,-314.206357129931,"CHH","Os09g0397200","promoter","OsSTA226","Conserved hypothetical protein && - && -"]
[9,13962391,13962441,51,5,0.479150401605599,0.697635035343622,-0.218484633738024,-19.2325402427293,"CHG","9:13961320:13963321","CGI_shore"]
[9,13993996,13994158,163,15,0.130172810082764,0.333891005668468,-0.203718195585704,-68.4552005570321,"CG","Os09g0400300","promoter","CINNAMYL ALCOHOL DEHYDROGENASE 8C","Similar to Cinnamyl alcohol dehydrogenase (EC 1.1.1.195) && sp|Q6ERW7|CAD8C_ORYSJ Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica OX=39947 GN=CAD8C PE=2 SV=2 && -"]
[9,14690662,14690767,106,30,0.106020822145789,0.313491882483549,-0.20747106033776,-174.743695283551,"CHH","Os09g0413300","promoter","PENTATRICOPEPTIDE REPEAT PROTEIN 1","Pentatricopeptide repeat domain containing protein && sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2 && -"]
[9,14690662,14690767,106,30,0.106020822145789,0.313491882483549,-0.20747106033776,-174.743695283551,"CHH","9:14690334:14692335","CGI_shore"]
[9,14717004,14717126,123,33,0.311637051240655,0.600121758172686,-0.288484706932031,-167.072039294764,"CHH","9:14715315:14717315","CGI_shore"]
[9,14717004,14717126,123,33,0.311637051240655,0.600121758172686,-0.288484706932031,-167.072039294764,"CHH","9:14716490:14718490","CGI_shore"]
[9,14922279,14922336,58,16,0.105827032041304,0.180710390937109,-0.0748833588958051,-70.859578639273,"CHH","9:14920924:14922925","CGI_shore"]
[9,14922279,14922336,58,16,0.105827032041304,0.180710390937109,-0.0748833588958051,-70.859578639273,"CHH","Os09g0416700","intron","Os09g0416700","Vesicle transport v-SNARE family protein && sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana OX=3702 GN=GOS11 PE=2 SV=1 && PF12352:Snare region anchored in the vesicle membrane C-terminus"]
[9,15016839,15016999,161,13,0.326316959047496,0.537668771874066,-0.21135181282657,-60.9749613927232,"CG","Os09g0418250","promoter","Os09g0418250","Hypothetical conserved gene && - && -"]
[9,15016839,15016999,161,13,0.326316959047496,0.537668771874066,-0.21135181282657,-60.9749613927232,"CG","9:15016425:15018426","CGI_shore"]
[9,15016839,15016999,161,13,0.326316959047496,0.537668771874066,-0.21135181282657,-60.9749613927232,"CG","9:15016458:15018458","CGI_shore"]
[9,15056290,15056358,69,20,0.143084765683703,0.215012174402279,-0.0719274087185757,-88.9082790906463,"CHH","9:15054295:15056295","CGI_shore"]
[9,15056290,15056358,69,20,0.143084765683703,0.215012174402279,-0.0719274087185757,-88.9082790906463,"CHH","9:15054852:15056853","CGI_shore"]
[9,15056290,15056358,69,20,0.143084765683703,0.215012174402279,-0.0719274087185757,-88.9082790906463,"CHH","9:15056296:15059954","CGI"]
[9,15222570,15222656,87,14,0.638972165483321,0.88474081139859,-0.245768645915269,-84.2719323555774,"CG","9:15221360:15225383","CGI"]
[9,15227554,15227732,179,20,0.524200943720077,0.787681988280101,-0.263481044560024,-124.82197189614,"CG","Os09g0421300","promoter","PHOSPHOLIPASE D alpha 8","Phospholipase D lambda && sp|Q38882|PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana OX=3702 GN=PLDALPHA1 PE=1 SV=2 && PF12357:Phospholipase D C terminal|PF00168:C2 domain|PF13091:PLD-like domain|PF00614:Phospholipase D Active site motif"]
[9,15253793,15253907,115,20,0.1214377403322,0.316817942090056,-0.195380201757856,-107.246542984921,"CG","9:15253818:15255818","CGI_shore"]
[9,15253793,15253907,115,20,0.1214377403322,0.316817942090056,-0.195380201757856,-107.246542984921,"CG","9:15253176:15255177","CGI_shore"]
[9,15253793,15253907,115,20,0.1214377403322,0.316817942090056,-0.195380201757856,-107.246542984921,"CG","Os09g0422000","intron","hydroxycinnamoyl CoA_shikimate/quinate hydroxycinnamoyl transferase 3","Transferase family protein && sp|Q5SMM8|PHT1_ORYSJ Putrescine hydroxycinnamoyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PHT1 PE=2 SV=1 && PF02458:Transferase family"]
[9,15646288,15646439,152,7,0.184341439704459,0.802062158884391,-0.617720719179932,-47.7274221773296,"CHG","9:15644939:15646939","CGI_shore"]
[9,15646288,15646439,152,7,0.184341439704459,0.802062158884391,-0.617720719179932,-47.7274221773296,"CHG","9:15645092:15647093","CGI_shore"]
[9,15646288,15646439,152,7,0.184341439704459,0.802062158884391,-0.617720719179932,-47.7274221773296,"CHG","9:15645766:15647766","CGI_shore"]
[9,15679190,15679342,153,30,0.111695647155027,0.395076061900504,-0.283380414745477,-157.961208034406,"CG","9:15679035:15680833","CGI"]
[9,16184134,16184279,146,25,0.00857000951243279,0.1465612797444,-0.137991270231968,-154.293594261959,"CHH","9:16182390:16184390","CGI_shore"]
[9,16184134,16184279,146,25,0.00857000951243279,0.1465612797444,-0.137991270231968,-154.293594261959,"CHH","9:16183909:16185909","CGI_shore"]
[9,16862405,16862577,173,43,0.149402711400097,0.320903898450156,-0.171501187050059,-288.057421021813,"CHH","Os09g0450300","promoter","Os09g0450300","MAP65/ASE1 family protein && sp|Q9SIS3|MA656_ARATH 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana OX=3702 GN=MAP65-6 PE=1 SV=1 && PF03999:Microtubule associated protein (MAP65/ASE1 family)"]
[9,17025393,17025451,59,7,0.0802774130204726,0.301322124726063,-0.22104471170559,-25.8966141040676,"CG","9:17024878:17026879","CGI_shore"]
[9,17025393,17025451,59,7,0.0802774130204726,0.301322124726063,-0.22104471170559,-25.8966141040676,"CG","Os09g0453800","intron","Aminotransferase OsIDI4, Fe-deficiency-induced protein 4","1-aminocyclopropane-1-carboxylate synthase family protein && sp|P9WPZ4|DAPC_MYCTO Probable N-succinyldiaminopimelate aminotransferase DapC OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=dapC PE=1 SV=1 && PF00155:Aminotransferase class I and II"]
[9,17345272,17345388,117,37,0.0729594191686885,0.175708550720352,-0.102749131551663,-188.183198097141,"CHH","9:17343483:17345483","CGI_shore"]
[9,17345272,17345388,117,37,0.0729594191686885,0.175708550720352,-0.102749131551663,-188.183198097141,"CHH","9:17343750:17345751","CGI_shore"]
[9,17345272,17345388,117,37,0.0729594191686885,0.175708550720352,-0.102749131551663,-188.183198097141,"CHH","9:17345267:17347267","CGI_shore"]
[9,17469585,17469671,87,7,0.0721626666195447,0.217929801721668,-0.145767135102123,-28.8572392417036,"CHG","Os09g0462000","promoter","Os09g0462000","Hypothetical protein && sp|Q9SMM9|CXE13_ARATH Probable carboxylesterase 13 OS=Arabidopsis thaliana OX=3702 GN=CXE13 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17469585,17469671,87,7,0.0721626666195447,0.217929801721668,-0.145767135102123,-28.8572392417036,"CHG","9:17444563:17473286","CGI"]
[9,17469629,17469729,101,11,0.208969199117787,0.581411971700958,-0.372442772583172,-72.4309138108928,"CG","Os09g0462000","promoter","Os09g0462000","Hypothetical protein && sp|Q9SMM9|CXE13_ARATH Probable carboxylesterase 13 OS=Arabidopsis thaliana OX=3702 GN=CXE13 PE=1 SV=1 && PF07859:alpha/beta hydrolase fold"]
[9,17469629,17469729,101,11,0.208969199117787,0.581411971700958,-0.372442772583172,-72.4309138108928,"CG","9:17444563:17473286","CGI"]
[9,17559660,17559770,111,34,0.0115111741411103,0.0643931870125168,-0.0528820128714066,-158.886211111699,"CHH","9:17557838:17559839","CGI_shore"]
[9,18161660,18161763,104,20,0.0221434851023597,0.208214385137791,-0.186070900035432,-105.704888886261,"CHH","9:18160510:18162510","CGI_shore"]
[9,18161660,18161763,104,20,0.0221434851023597,0.208214385137791,-0.186070900035432,-105.704888886261,"CHH","9:18161230:18163231","CGI_shore"]
[9,18225275,18225388,114,6,0.439305660748408,0.768149159544916,-0.328843498796508,-33.6820422030546,"CG","9:18223627:18225628","CGI_shore"]
[9,18225275,18225388,114,6,0.439305660748408,0.768149159544916,-0.328843498796508,-33.6820422030546,"CG","Os09g0475700","utr3","Prolyl Oligopeptidase 19, PROLYL OLIGOPEPTIDASE 19","Peptidase S9A, prolyl oligopeptidase family protein && sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata OX=477 GN=ptrB PE=3 SV=1 && PF02897:Prolyl oligopeptidase, N-terminal beta-propeller domain|PF00326:Prolyl oligopeptidase family"]
[9,18225275,18225388,114,6,0.439305660748408,0.768149159544916,-0.328843498796508,-33.6820422030546,"CG","Os09g0475700","exon","Prolyl Oligopeptidase 19, PROLYL OLIGOPEPTIDASE 19","Peptidase S9A, prolyl oligopeptidase family protein && sp|Q59536|PTRB_MORLA Protease 2 OS=Moraxella lacunata OX=477 GN=ptrB PE=3 SV=1 && PF02897:Prolyl oligopeptidase, N-terminal beta-propeller domain|PF00326:Prolyl oligopeptidase family"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","Os09g0489200","promoter","Jumonji 712","Similar to transcription factor jumonji (jmjC) domain-containing protein && sp|Q8RWR1|JMJ30_ARATH Lysine-specific demethylase JMJ30 OS=Arabidopsis thaliana OX=3702 GN=JMJ30 PE=1 SV=1 && PF13621:Cupin-like domain"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","9:18867586:18869587","CGI_shore"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","9:18868971:18870972","CGI_shore"]
[9,18869106,18869191,86,17,0.122923664974377,0.240647752983435,-0.117724088009058,-88.3948707612081,"CHH","Os09g0489500","intron","b-ZIP TRANSCRIPTION FACTOR 74","bZIP transcription factor, Tapetum developmen && sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10 OS=Nicotiana tabacum OX=4097 GN=TGA10 PE=1 SV=1 && PF14144:Seed dormancy control|PF00170:bZIP transcription factor"]
[9,18920501,18920665,165,47,0.0348504833547944,0.18966014179665,-0.154809658441855,-264.193227807285,"CHH","9:18918866:18920867","CGI_shore"]
[9,18920501,18920665,165,47,0.0348504833547944,0.18966014179665,-0.154809658441855,-264.193227807285,"CHH","9:18919317:18921317","CGI_shore"]
[9,18920501,18920665,165,47,0.0348504833547944,0.18966014179665,-0.154809658441855,-264.193227807285,"CHH","Os09g0491532","intron","RICE SQUAMOSA PROMOTER-BINDING-LIKE 17","Similar to Squamosa-promoter binding protein 2 && sp|A3C057|SPL17_ORYSJ Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL17 PE=2 SV=2 && PF03110:SBP domain"]
[9,18977203,18977266,64,13,0.168095000928582,0.403741457132185,-0.235646456203603,-56.9427566458428,"CG","9:18975994:18977995","CGI_shore"]
[9,18977203,18977266,64,13,0.168095000928582,0.403741457132185,-0.235646456203603,-56.9427566458428,"CG","9:18976420:18978626","CGI"]
[9,19217639,19217728,90,6,0.532719280368088,0.851987694833513,-0.319268414465425,-36.0037751054814,"CG","9:19216409:19218410","CGI_shore"]
[9,19217639,19217728,90,6,0.532719280368088,0.851987694833513,-0.319268414465425,-36.0037751054814,"CG","Os09g0497000","exon","Os09g0497000","Adenine nucleotide translocator 1 domain containing protein && sp|Q9LJX5|BRTL1_ARATH Probable mitochondrial adenine nucleotide transporter BTL1 OS=Arabidopsis thaliana OX=3702 GN=At3g20240 PE=2 SV=1 && PF00153:Mitochondrial carrier protein"]
[9,19217639,19217728,90,6,0.532719280368088,0.851987694833513,-0.319268414465425,-36.0037751054814,"CG","Os09g0497000","intron","Os09g0497000","Adenine nucleotide translocator 1 domain containing protein && sp|Q9LJX5|BRTL1_ARATH Probable mitochondrial adenine nucleotide transporter BTL1 OS=Arabidopsis thaliana OX=3702 GN=At3g20240 PE=2 SV=1 && PF00153:Mitochondrial carrier protein"]
[9,19672394,19672621,228,15,0.0856790563171492,0.628732915033158,-0.543053858716009,-132.202424996349,"CG","Os09g0507400","exon","Os09g0507400","Conserved hypothetical protein && - && -"]
[9,19672394,19672621,228,15,0.0856790563171492,0.628732915033158,-0.543053858716009,-132.202424996349,"CG","9:19671835:19673836","CGI_shore"]
[9,19672394,19672621,228,15,0.0856790563171492,0.628732915033158,-0.543053858716009,-132.202424996349,"CG","Os09g0507400","utr3","Os09g0507400","Conserved hypothetical protein && - && -"]
[9,20254172,20254360,189,17,0.521551586741109,0.745285987948936,-0.223734401207827,-85.0501767977731,"CG","9:20252558:20254559","CGI_shore"]
[9,20254172,20254360,189,17,0.521551586741109,0.745285987948936,-0.223734401207827,-85.0501767977731,"CG","Os09g0518800","exon","Os09g0518800","Conserved hypothetical protein && - && -"]
[9,20254172,20254360,189,17,0.521551586741109,0.745285987948936,-0.223734401207827,-85.0501767977731,"CG","Os09g0518800","utr3","Os09g0518800","Conserved hypothetical protein && - && -"]
[9,20257693,20257798,106,6,0.103577647876485,0.28789674448251,-0.184319096606025,-25.6397822570083,"CHG","Os09g0519000","promoter","Os09g0519000","Hypothetical protein && - && PF13578:Methyltransferase domain"]
[9,20257693,20257798,106,6,0.103577647876485,0.28789674448251,-0.184319096606025,-25.6397822570083,"CHG","9:20256816:20258816","CGI_shore"]
[9,20347055,20347141,87,23,0.00644896878853385,0.0756323785067133,-0.0691834097181795,-133.005301863394,"CHH","Os09g0520700","exon","RNA helicase 7","Similar to RNA helicase && sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1 && PF08152:GUCT (NUC152) domain|PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain"]
[9,20347055,20347141,87,23,0.00644896878853385,0.0756323785067133,-0.0691834097181795,-133.005301863394,"CHH","Os09g0520700","utr3","RNA helicase 7","Similar to RNA helicase && sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1 && PF08152:GUCT (NUC152) domain|PF00270:DEAD/DEAH box helicase|PF00271:Helicase conserved C-terminal domain"]
[9,20409627,20409723,97,5,0.148978462977329,0.680216524895492,-0.531238061918164,-25.3912824520584,"CHG","9:20408118:20410118","CGI_shore"]
[9,20409627,20409723,97,5,0.148978462977329,0.680216524895492,-0.531238061918164,-25.3912824520584,"CHG","9:20409436:20411437","CGI_shore"]
[9,20712977,20713070,94,24,0.0183182497925002,0.0792271316426366,-0.0609088818501364,-109.736868288644,"CHH","9:20711555:20713555","CGI_shore"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","Os09g0530300","exon","Os09g0530300","Cytochrome P450 family protein && sp|O81970|C71A9_SOYBN Cytochrome P450 71A9 OS=Glycine max OX=3847 GN=CYP71A9 PE=2 SV=1 && PF00067:Cytochrome P450"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","Os09g0530350","promoter","Os09g0530350","Hypothetical protein && sp|P24465|C71A1_PERAE Cytochrome P450 71A1 OS=Persea americana OX=3435 GN=CYP71A1 PE=1 SV=2 && PF00067:Cytochrome P450"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","Os09g0530300","utr3","Os09g0530300","Cytochrome P450 family protein && sp|O81970|C71A9_SOYBN Cytochrome P450 71A9 OS=Glycine max OX=3847 GN=CYP71A9 PE=2 SV=1 && PF00067:Cytochrome P450"]
[9,20775943,20776067,125,13,0.0102724264991601,0.384177695733371,-0.373905269234211,-95.275821019956,"CHH","9:20774337:20778402","CGI"]
[9,20792529,20792642,114,23,0.00879019489493484,0.0978243274060073,-0.0890341325110725,-132.275481312033,"CHH","Os09g0530800","promoter","Subtilisin 59, SUBTILISIN 59","Similar to predicted protein && sp|Q8L7I2|SBT36_ARATH Subtilisin-like protease SBT3.6 OS=Arabidopsis thaliana OX=3702 GN=SBT3.6 PE=2 SV=1 && -"]
[9,20813583,20813738,156,44,0.154144130556043,0.344759860495422,-0.190615729939379,-245.971813209266,"CHH","9:20813126:20815127","CGI_shore"]
[9,20813583,20813738,156,44,0.154144130556043,0.344759860495422,-0.190615729939379,-245.971813209266,"CHH","Os09g0531200","promoter","ML6","RNA recognition motif 2 domain containing protein && sp|Q652K6|OML6_ORYSJ Protein MEI2-like 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ML6 PE=2 SV=1 && PF04059:RNA recognition motif 2"]
[9,20883970,20884086,117,43,0.565155096952422,0.851277821270652,-0.28612272431823,-210.096103745697,"CG","9:20880896:20884347","CGI"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","Os09g0536700","exon","MAJOR FACILITATOR SUPERFAMILY 5","Similar to predicted protein && sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1 && -"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","9:21111722:21113723","CGI_shore"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","Os09g0536800","exon","Os09g0536800","Hypothetical protein && sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1 && PF06813:Nodulin-like"]
[9,21113196,21113250,55,10,0.0602060178302808,0.152281848837143,-0.0920758310068621,-45.2225074952501,"CG","9:21112764:21114483","CGI"]
[9,21135657,21135740,84,14,0.179786266129378,0.486442324701035,-0.306656058571657,-95.6138706376615,"CG","Os09g0537000","promoter","Os09g0537000","Hypothetical protein && - && -"]
[9,21135657,21135740,84,14,0.179786266129378,0.486442324701035,-0.306656058571657,-95.6138706376615,"CG","Os09g0537200","exon","Os09g0537200","Conserved hypothetical protein && - && -"]
[9,21135657,21135740,84,14,0.179786266129378,0.486442324701035,-0.306656058571657,-95.6138706376615,"CG","9:21135014:21137015","CGI_shore"]
[9,21171330,21171481,152,21,0.688183000184567,0.907026565612582,-0.218843565428014,-82.6969851237486,"CG","Os09g0538200","promoter","20S proteasome alpha4 subunit","Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4) && sp|A2Z3I9|PSA7B_ORYSI Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica OX=39946 GN=PAD1 PE=2 SV=1 && PF10584:Proteasome subunit A N-terminal signature|PF00227:Proteasome subunit"]
[9,21171330,21171481,152,21,0.688183000184567,0.907026565612582,-0.218843565428014,-82.6969851237486,"CG","9:21170464:21172307","CGI"]
[9,21171461,21171579,119,18,0.10792728785958,0.461695132372606,-0.353767844513026,-156.801796902867,"CHH","Os09g0538200","promoter","20S proteasome alpha4 subunit","Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit alpha-4) && sp|A2Z3I9|PSA7B_ORYSI Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica OX=39946 GN=PAD1 PE=2 SV=1 && PF10584:Proteasome subunit A N-terminal signature|PF00227:Proteasome subunit"]
[9,21171461,21171579,119,18,0.10792728785958,0.461695132372606,-0.353767844513026,-156.801796902867,"CHH","9:21170464:21172307","CGI"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538800","utr5","Os09g0538800","Similar to Synaptotagmin C && sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2 && -"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","9:21216449:21218449","CGI_shore"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538901","exon","Os09g0538901","Hypothetical protein && sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana OX=3702 GN=SYT2 PE=2 SV=1 && -"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538901","utr3","Os09g0538901","Hypothetical protein && sp|B6ETT4|SYT2_ARATH Synaptotagmin-2 OS=Arabidopsis thaliana OX=3702 GN=SYT2 PE=2 SV=1 && -"]
[9,21217273,21217352,80,8,0.247760534711934,0.670438463670962,-0.422677928959028,-47.0637563328734,"CG","Os09g0538800","exon","Os09g0538800","Similar to Synaptotagmin C && sp|Q9SKR2|SYT1_ARATH Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2 && -"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540600","promoter","Mediator 4_1","Similar to WD-40 repeat protein MSI1 && sp|Q10G81|MSI1_ORYSJ Histone-binding protein MSI1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=MSI1 PE=2 SV=1 && PF12265:Histone-binding protein RBBP4 or subunit C of CAF1 complex"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","exon","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","utr5","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","TSS","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","Os09g0540500","promoter","Mediator complex protein OsMED4","Mediator complex, subunit Med4 domain containing protein && sp|Q9LZ00|MED4_ARATH Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1 && PF10018:Vitamin-D-receptor interacting Mediator subunit 4"]
[9,21276262,21276315,54,19,0.0458257613602592,0.144854928830019,-0.09902916746976,-89.1028990798292,"CG","9:21260784:21277159","CGI"]
[9,21711344,21711418,75,14,0.395109717343088,0.604157466818352,-0.209047749475265,-88.7646359651117,"CHG","9:21708692:21711498","CGI"]
[9,22199248,22199492,245,44,0.57604672435757,0.867461010425466,-0.291414286067896,-220.232842408205,"CG","9:22198817:22202900","CGI"]
[9,22270172,22270284,113,22,0.249954925567744,0.440368059143123,-0.190413133575379,-100.474478536037,"CHG","Os09g0560400","promoter","Os09g0560400","Hypothetical conserved gene && - && -"]
[9,22270172,22270284,113,22,0.249954925567744,0.440368059143123,-0.190413133575379,-100.474478536037,"CHG","9:22269609:22271610","CGI_shore"]
[9,22270172,22270284,113,22,0.249954925567744,0.440368059143123,-0.190413133575379,-100.474478536037,"CHG","Os09g0560450","exon","Os09g0560450","Similar to Regulator of chromosome condensation/beta-lactamase-inhibitor protein II && sp|Q9FJG9|RUG3_ARATH RCC1 domain-containing protein RUG3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RUG3 PE=1 SV=1 && PF00415:Regulator of chromosome condensation (RCC1) repeat"]
[9,22458364,22458445,82,32,0.081631082423358,0.168934603548178,-0.0873035211248201,-173.492803179453,"CHH","9:22456435:22458436","CGI_shore"]
[9,22458364,22458445,82,32,0.081631082423358,0.168934603548178,-0.0873035211248201,-173.492803179453,"CHH","Os09g0564700","promoter","Os09g0564700","Similar to Vignain && sp|P43156|CYSP_HEMSP Thiol protease SEN102 OS=Hemerocallis sp. OX=29711 GN=SEN102 PE=2 SV=1 && PF00112:Papain family cysteine protease|PF08246:Cathepsin propeptide inhibitor domain (I29)"]
[9,22458364,22458445,82,32,0.081631082423358,0.168934603548178,-0.0873035211248201,-173.492803179453,"CHH","9:22457574:22459575","CGI_shore"]
[9,22798883,22799046,164,45,0.136824953959372,0.322043951606042,-0.18521899764667,-230.956512010798,"CHH","Os09g0570900","promoter","Os09g0570900","Amino acid-binding ACT domain containing protein && sp|Q9SJM1|ACR10_ARATH ACT domain-containing protein ACR10 OS=Arabidopsis thaliana OX=3702 GN=ACR10 PE=2 SV=1 && -"]
[9,22798883,22799046,164,45,0.136824953959372,0.322043951606042,-0.18521899764667,-230.956512010798,"CHH","9:22797764:22799765","CGI_shore"]
["Mt",414921,416243,1323,18,0.19386300719181,0.655010211150843,-0.461147203959033,-97.8466802036374,"CHG","Mt:413300:415228","CGI"]
["Mt",414921,416243,1323,18,0.19386300719181,0.655010211150843,-0.461147203959033,-97.8466802036374,"CHG","Mt:415228:417229","CGI_shore"]
["Syng_TIGR_027",533,591,59,5,0.225359088519543,0.595906653737633,-0.370547565218091,-23.6288936411165,"CHG","Syng_TIGR_027:0:733","CGI_shore"]
["Syng_TIGR_028",1248,1334,87,13,0.528957494473041,0.791297715338381,-0.262340220865339,-55.106778036151,"CG","Syng_TIGR_028:745:2745","CGI_shore"]

{"sheet":"Genes of hypo DMRs ","index":3,"n_rows":2597,"n_cols":38,"rows_kept":2597,"merged":[[0,0,0,3]]}
["Table S3d. Genes from different types of hypo DMRs."]
[null,"DMR_Hypo_Genes","DMR_Hypo_Promoters","CG_DMR","CHG_DMR","CHH_DMR","DMR_Hypo_Genes|DMR_Hypo_Promoters","DMR_Hypo_Genes|CG_DMR","DMR_Hypo_Genes|CHG_DMR","DMR_Hypo_Genes|CHH_DMR","DMR_Hypo_Promoters|CG_DMR","DMR_Hypo_Promoters|CHG_DMR","DMR_Hypo_Promoters|CHH_DMR","CG_DMR|CHH_DMR","CHG_DMR|CHH_DMR","DMR_Hypo_Genes|DMR_Hypo_Promoters|CG_DMR","DMR_Hypo_Genes|DMR_Hypo_Promoters|CHG_DMR","DMR_Hypo_Genes|DMR_Hypo_Promoters|CHH_DMR","DMR_Hypo_Genes|CG_DMR|CHH_DMR","DMR_Hypo_Genes|CHG_DMR|CHH_DMR","DMR_Hypo_Promoters|CG_DMR|CHH_DMR","DMR_Hypo_Genes|DMR_Hypo_Promoters|CG_DMR|CHH_DMR","DEG_Up","CHH_DMR|DEG_Up","CG_DMR|DEG_Up","DMR_Hypo_Promoters|DEG_Up","DMR_Hypo_Promoters|CHH_DMR|DEG_Up","DMR_Hypo_Promoters|CHG_DMR|DEG_Up","DMR_Hypo_Promoters|CG_DMR|DEG_Up","DMR_Hypo_Promoters|CG_DMR|CHH_DMR|DEG_Up","DMR_Hypo_Genes|DEG_Up","DMR_Hypo_Genes|CHH_DMR|DEG_Up","DMR_Hypo_Genes|CHG_DMR|DEG_Up","DMR_Hypo_Genes|CHG_DMR|CHH_DMR|DEG_Up","DMR_Hypo_Genes|CG_DMR|DEG_Up","DMR_Hypo_Genes|DMR_Hypo_Promoters|CHH_DMR|DEG_Up","DMR_Hypo_Genes|DMR_Hypo_Promoters|CG_DMR|DEG_Up","DMR_Hypo_Genes|DMR_Hypo_Promoters|CG_DMR|CHH_DMR|DEG_Up"]
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[19,"Os03g0612400","Os01g0960500","Os02g0302500","Os06g0418151","Os01g0187500",null,"Os01g0822200","Os05g0169600","Os02g0616300","Os02g0195533","Os04g0231266","Os01g0793600",null,null,"Os05g0244800",{"$nulls":6},"Os12g0244400","Os02g0724500",{"$nulls":10},"Os12g0607000"]
[20,"Os03g0679300","Os02g0107350","Os02g0310400","Os06g0528350","Os01g0193600",null,"Os01g0833100","Os05g0169701","Os02g0616450","Os02g0215950","Os04g0572600","Os01g0836400",null,null,"Os05g0361900",{"$nulls":6},"Os12g0621400","Os02g0780200"]
[21,"Os03g0727900","Os02g0150450","Os02g0318200","Os06g0570566","Os01g0208700",null,"Os01g0853400","Os06g0271500","Os02g0694201","Os02g0285800","Os05g0162800","Os01g0851100",null,null,"Os05g0365450",{"$nulls":6},"Os06g0181500","Os03g0223400"]
[22,"Os03g0730100","Os02g0219400","Os02g0477401","Os06g0622500","Os01g0209500",null,"Os01g0870400","Os06g0484950","Os02g0796300","Os02g0467600","Os05g0456800","Os01g0889900",null,null,"Os05g0379300",{"$nulls":6},"Os04g0458900","Os03g0256800"]
[23,"Os04g0219000","Os02g0332800","Os02g0599700","Os06g0730200","Os01g0213350",null,"Os01g0872500","Os06g0520600","Os02g0817700","Os02g0496100","Os05g0470000","Os01g0904700",null,null,"Os05g0567100",{"$nulls":6},"Os06g0556600","Os03g0278500"]
[24,"Os04g0351100","Os02g0468100","Os02g0632700","Os07g0186150","Os01g0216350",null,"Os01g0872533","Os06g0626466","Os02g0833600","Os02g0542500","Os06g0258500","Os02g0149800",null,null,"Os06g0224775",{"$nulls":6},"Os08g0277200","Os03g0281300"]
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[31,"Os06g0588450","Os03g0338600","Os03g0360700","Os11g0178200","Os01g0260500",null,"Os02g0132500","Os10g0170000","Os03g0440900","Os02g0712550","Os07g0660700","Os02g0519950",null,null,"Os09g0112100",{"$nulls":6},"Os09g0381400","Os03g0819300"]
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{"sheet":"Genes of hyper DMRs","index":4,"n_rows":3063,"n_cols":38,"rows_kept":3063,"merged":[[0,0,0,3]]}
["Table S3e. Genes from different types of hyper DMRs."]
[null,"DMR_Hyper.Genes","DMR_Hyper_Promoters","CG_DMR","CHG_DMR","CHH_DMR","DMR_Hyper.Genes|DMR_Hyper_Promoters","DMR_Hyper.Genes|CG_DMR","DMR_Hyper.Genes|CHG_DMR","DMR_Hyper.Genes|CHH_DMR","DMR_Hyper_Promoters|CG_DMR","DMR_Hyper_Promoters|CHG_DMR","DMR_Hyper_Promoters|CHH_DMR","CG_DMR|CHH_DMR","DMR_Hyper.Genes|DMR_Hyper_Promoters|CG_DMR","DMR_Hyper.Genes|DMR_Hyper_Promoters|CHG_DMR","DMR_Hyper.Genes|DMR_Hyper_Promoters|CHH_DMR","DMR_Hyper.Genes|CG_DMR|CHH_DMR","DMR_Hyper_Promoters|CG_DMR|CHH_DMR","DMR_Hyper_Promoters|CHG_DMR|CHH_DMR","DMR_Hyper.Genes|DMR_Hyper_Promoters|CG_DMR|CHH_DMR","DMR_Hyper.Genes|DMR_Hyper_Promoters|CHG_DMR|CHH_DMR","DEG_Down","CHH_DMR|DEG_Down","CHG_DMR|DEG_Down","CG_DMR|DEG_Down","DMR_Hyper_Promoters|DEG_Down","DMR_Hyper_Promoters|CHH_DMR|DEG_Down","DMR_Hyper_Promoters|CHG_DMR|DEG_Down","DMR_Hyper_Promoters|CHG_DMR|CHH_DMR|DEG_Down","DMR_Hyper_Promoters|CG_DMR|DEG_Down","DMR_Hyper_Promoters|CG_DMR|CHH_DMR|DEG_Down","DMR_Hyper.Genes|DEG_Down","DMR_Hyper.Genes|CHH_DMR|DEG_Down","DMR_Hyper.Genes|CHG_DMR|DEG_Down","DMR_Hyper.Genes|CG_DMR|DEG_Down","DMR_Hyper.Genes|DMR_Hyper_Promoters|CHH_DMR|DEG_Down","DMR_Hyper.Genes|DMR_Hyper_Promoters|CG_DMR|CHH_DMR|DEG_Down"]
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