{"text_format":"3","workbook":"xls","n_sheets":1,"sheets":["Saraivaetal_Additionalfile_15_T"],"read":"whole","date_system":"1900","formulas":"cached_only"}

{"sheet":"Saraivaetal_Additionalfile_15_T","index":0,"n_rows":73,"n_cols":5,"rows_kept":73,"merged":[[0,0,0,2],[1,0,1,1],[2,0,2,1],[3,0,3,1],[4,0,4,1],[5,0,5,1],[6,0,6,1],[7,0,7,1],[8,0,8,1],[9,0,9,1],[10,0,10,1],[11,0,11,1],[12,0,12,1],[13,0,13,1],[14,0,14,1],[15,0,15,1],[16,0,16,1],[17,0,17,1],[18,0,18,1],[19,0,19,1],[20,0,20,1],[21,0,21,1],[22,0,22,1],[23,0,23,1],[24,0,24,1],[25,0,25,1],[28,0,28,1],[59,0,59,1],[60,1,60,2],[61,1,61,2],[62,1,62,2],[63,1,63,2],[64,1,64,2],[65,1,65,2],[66,1,66,2],[67,1,67,2],[68,1,68,2],[69,1,69,2],[70,1,70,2],[71,1,71,2],[72,1,72,2]],"flags":["formulas_cached_only"]}
["Table S16. Statistics obtained during the clustering of protein orthologs using the Fetzer_genome_set. OrthoFinder output 1 shows the numbers of species, genes, clusters and genes per cluster, among others. OrthoFinder output 2 shows the average number of genes per species in orthogroups of different sizes. OrthoFinder output 3 shows the number of orthogroups composed of different numbers of species. The output generated by OrthoFinder is shown in pages 1-3."]
["OrthoFinder Output 1"]
["Number of species",null,12]
["Number of genes",null,69193]
["Number of genes in orthogroups",null,58353]
["Number of unassigned genes",null,10840]
["Percentage of genes in orthogroups",null,84.3]
["Percentage of unassigned genes",null,15.7]
["Number of orthogroups",null,9533]
["Number of species-specific orthogroups",null,1147]
["Number of genes in species-specific orthogroups",null,3087]
["Percentage of genes in species-specific orthogroups",null,4.5]
["Mean orthogroup size",null,6.1]
["Median orthogroup size",null,3]
["G50 (assigned genes)",null,10]
["G50 (all genes)",null,7]
["O50 (assigned genes)",null,1480]
["O50 (all genes)",null,2096]
["Number of orthogroups with all species present",null,541]
["Number of single-copy orthogroups",null,197]
["Date",null,"2020-05-19"]
["Orthogroups file",null,"Orthogroups.tsv"]
["Unassigned genes file",null,"Orthogroups_UnassignedGenes.tsv"]
["Per-species statistics file",null,"Statistics_PerSpecies.tsv"]
["Overall statistics file",null,"Statistics_Overall.tsv"]
["Orthogroups shared between species file",null,"Orthogroups_SpeciesOverlaps.tsv"]
[]
[]
["OrthoFinder Output 2"]
["Average number of genes per-species in orthogroup","No. of orthogroups","Orthogroups(%)","No. of genes","Genes(%)"]
["<1",8275,86.8,31543,54.1]
["'1",1007,10.6,14966,25.6]
["'2",141,1.5,3924,6.7]
["'3",44,0.5,1792,3.1]
["'4",16,0.2,871,1.5]
["'5",14,0.1,898,1.5]
["'6",6,0.1,455,0.8]
["'7",7,0.1,630,1.1]
["'8",8,0.1,815,1.4]
["'9",3,0,347,0.6]
["'10",1,0,122,0.2]
["11-15",9,0.1,1455,2.5]
["16-20",1,0,241,0.4]
["21-50",1,0,294,0.5]
["51-100",0,0,0,0]
["101-150",0,0,0,0]
["151-200",0,0,0,0]
["201-500",0,0,0,0]
["501-1000",0,0,0,0]
["'1001+",0,0,0,0]
{"$rows_empty":9}
["OrthoFinder Output 3"]
["Number of species in orthogroup","Number of orthogroups"]
[1,1147]
[2,3491]
[3,1370]
[4,796]
[5,492]
[6,447]
[7,385]
[8,238]
[9,229]
[10,229]
[11,168]
[12,541]