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["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYA","unmet_PHYA","X.met_WT","X.met_PHYA","X.diff_PHYA.ctrl","FDR_diff_PHYA.WT","logFC_PHYA","logCPM_PHYA","PValue_PHYA","padj_PHYA"]
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["Solyc00g005090","SL3.0ch00",1061916,1063916,"-",123,10,67,15,92.481,81.707,-10.773885934348,0.0463240113135053,0,-3.91085760741443,1,1]
["Solyc00g005094","SL3.0ch00",1146952,1148952,"-",1581,521,1158,501,75.214,69.801,-5.4129968358732,0.000811945851875707,0.0277807098883953,5.51213579848507,0.962023396889111,1]
["Solyc00g005287","SL3.0ch00",2357974,2359974,"-",658,94,471,99,87.5,82.632,-4.8684210526316,0.0284238349438172,4.34896448722908,-3.34939923908411,0.122502097723027,1]
["Solyc00g005440","SL3.0ch00",2365409,2367409,"-",913,112,933,170,89.073,84.587,-4.4856820644362,0.00670622201493656,0,-3.91085760741443,1,1]
["Solyc00g006090","SL3.0ch00",4007717,4009717,"+",422,17,164,20,96.128,89.13,-6.9971278597603,0.0038697419092724,0,-3.91085760741443,1,1]
["Solyc00g006550","SL3.0ch00",4529463,4531463,"-",467,45,392,66,91.211,85.59,-5.621417849345,0.0143319782766735,0,-3.91085760741443,1,1]
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["Solyc00g008070","SL3.0ch00",7078627,7080627,"+",568,36,645,75,94.04,89.583,-4.4564017660044,0.00922593112713733,0,-3.91085760741443,1,1]
["Solyc00g008570","SL3.0ch00",7584122,7586122,"-",359319,21894,97103,7021,94.257,93.257,-0.9996759989132,9.85011412845674e-31,1.73307603784174,4.3254472958713,2.94512915172793E-3,0.228011643937239]
["Solyc00g008580","SL3.0ch00",7582182,7584182,"+",197233,18048,52941,6263,91.617,89.421,-2.1952155011268,1.55945453908432E-57,1.77257994911729,5.85972231049318,0.00670889642388106,0.379689568495851]
["Solyc00g009146","SL3.0ch00",8215570,8217570,"-",537,83,298,95,86.613,75.827,-10.785931215628,7.42970893505099e-05,1.78811541706604,-3.87428074584103,0.999999999999999,1]
["Solyc00g009760","SL3.0ch00",8404083,8406083,"+",9248,960,3454,446,90.596,88.564,-2.0315087211639,0.00129561318396265,1.41753433556223,4.48675295557097,0.017251903943932,0.632363030676294]
["Solyc00g010530","SL3.0ch00",8854847,8856847,"-",44429,3247,14557,1319,93.189,91.692,-1.4975834933166,5.73685859796258e-09,1.02224897743792,-2.83968867727814,0.517543331831146,1]
["Solyc00g011150","SL3.0ch00",9131088,9133088,"-",117527,15027,33831,5849,88.663,85.26,-3.4039114749704,6.9324841633289e-69,1.56956395903939,4.09570081690159,0.0072646552041642,0.402232488146354]
["Solyc00g011160","SL3.0ch00",9129189,9131189,"+",371451,11662,92651,3740,96.956,96.12,-0.83601977941537,8.41560988321974e-36,1.75311895576882,5.13575323511232,3.52554005838761E-3,0.253725385932411]
["Solyc03g043580","SL3.0ch00",9309777,9311777,"+",280,25,117,31,91.803,79.054,-12.74922463447,0.000771605064356429,0,-3.91085760741443,1,1]
["Solyc00g012430","SL3.0ch00",9551103,9553103,"+",66272,5376,18594,2164,92.497,89.575,-2.9215467157827,1.21396019271367e-37,2.22073067721275,0.15022702524476,0.0387279479336795,0.912389810082781]
["Solyc00g012440","SL3.0ch00",9563323,9565323,"+",4485,470,1941,271,90.515,87.749,-2.7659879238645,1.59419146139172E-3,1.61738111785416,2.48019316520533,0.0155672244105582,0.600009140858669]
["Solyc00g020545","SL3.0ch00",10945268,10947268,"+",15593,2432,6980,1280,86.508,84.504,-2.003996332777,8.74506276882818e-05,-0.113495037629621,-3.07629557896507,1,1]
["Solyc00g020940","SL3.0ch00",10946755,10948755,"+",18873,2073,8095,1188,90.103,87.202,-2.9007093014885,2.96637212483183e-12,0,-3.91085760741443,1,1]
["Solyc00g039290","SL3.0ch00",12147085,12149085,"+",195,21,145,32,90.278,81.921,-8.3568738229755,0.0332630337178619,0,-3.91085760741443,1,1]
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["Solyc00g090860","SL3.0ch00",14446495,14448495,"-",512,323,423,379,61.317,52.743,-8.5742231248227,0.00156465791761791,0,-3.91085760741443,1,1]
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["Solyc00g110870","SL3.0ch00",15184121,15186121,"-",1730,320,452,159,84.39,73.977,-10.413157159395,1.34821598074074E-7,-0.891235028604377,-0.0775620395219219,0.442094804413917,1]
["Solyc00g117653","SL3.0ch00",15444881,15446881,"-",459,19392,184,12277,2.312,1.477,-0.83561907044493,9.50357750629619e-07,2.65327956938785,-3.83524949456005,0.586760169999405,1]
["Solyc00g118680","SL3.0ch00",15446465,15448465,"-",986,15302,340,9581,6.054,3.427,-2.6264624620949,2.32761019704414e-20,-1.71145608602361,-3.26670310808947,0.583103180596911,1]
["Solyc00g118690","SL3.0ch00",15444367,15446367,"+",354,16429,166,10288,2.109,1.588,-0.52136831045189,0.00596766873631181,1.89868729290682,-3.83471985926055,1,1]
["Solyc00g120930","SL3.0ch00",15516659,15518659,"-",570,38,473,59,93.75,88.91,-4.8402255639098,0.00958507658659846,0,-3.91085760741443,1,1]
["Solyc00g129880","SL3.0ch00",15807077,15809077,"+",633,73,592,121,89.66,83.029,-6.630603641796,0.000981783773835758,0,-3.91085760741443,1,1]
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["Solyc00g217960","SL3.0ch00",18350138,18352138,"+",442,235,215,182,65.288,54.156,-11.131864165882,1.22614956281769E-3,-0.410296037017906,4.61513213725202,0.28525346369091,1]
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["Solyc01g005730","SL3.0ch01",488688,490688,"+",386,214,252,282,64.333,47.191,-17.142322097378,7.93016507892441e-08,0.0106423024426848,7.85887186447853,0.983637846251663,1]
["Solyc01g005800","SL3.0ch01",515973,517973,"-",1527,290,1264,315,84.04,80.051,-3.9889607789078,0.00668773581511268,1.27981611783238,2.02873640424701,0.148928703558898,1]
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["Solyc01g005900","SL3.0ch01",593877,595877,"-",253,279,184,315,47.556,36.874,-10.682643482454,1.72287365802342E-3,1.81335005627554,-3.25020664860293,1,1]
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["Solyc01g005940","SL3.0ch01",612494,614494,"+",1296,76,1180,124,94.461,90.491,-3.9698438534046,4.83365510935455E-4,3.59439139945612,-3.56140207071382,0.382399748174349,1]
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["Solyc12g099900","SL3.0ch12",67825277,67827277,"+",518,339,195,480,60.443,28.889,-31.55451834565,3.0259776498196E-33,0.772098457614761,4.02006486106073,0.102581100032449,1]
["Solyc12g099910","SL3.0ch12",67830642,67832642,"+",2762,799,2398,817,77.562,74.588,-2.9746130863864,0.0102957253145474,0.180225491656214,6.38411987643982,0.536246818629284,1]
["Solyc12g100100","SL3.0ch12",67934890,67936890,"+",416,82,386,126,83.534,75.391,-8.1435115461847,0.00402300502467082,0,-3.91085760741443,1,1]
["Solyc12g100130","SL3.0ch12",67953810,67955810,"+",137,147,31,67,48.239,31.633,-16.606783558494,0.0108770154172171,-0.154241893563694,4.45394913947937,0.614978459107253,1]
["Solyc12g100150","SL3.0ch12",67963908,67965908,"+",282,373,169,303,43.053,35.805,-7.2483503687411,0.0308834001212843,3.20171349412838,-2.47412922827029,0.121878332286905,1]
["Solyc12g100170","SL3.0ch12",67973773,67975773,"+",233,158,114,189,59.591,37.624,-21.967030462637,1.25218118177885E-7,0,-0.840707422538963,1,1]
["Solyc12g100260","SL3.0ch12",68017980,68019980,"+",8,43,1,72,15.686,1.37,-14.316411496105,0.00860584231074493,7.74998617316363,3.59491355188976,2.48138095973399E-4,0.0376076415965107]
["Solyc12g100280","SL3.0ch12",68030644,68032644,"-",219,301,156,379,42.115,29.159,-12.956506110712,6.24783223527753e-05,-3.39621793629361,-3.76922177802069,0.436642576787957,1]
["Solyc12g100310","SL3.0ch12",68065572,68067572,"-",954,199,630,250,82.741,71.591,-11.149767405188,2.80591452332743E-8,-0.114597952561712,5.72997225902678,0.708911743844284,1]
["Solyc12g100300","SL3.0ch12",68050958,68052958,"+",1639,124,1366,155,92.967,89.809,-3.1571983533238,0.00384842586255438,0.893666623659232,-1.78227665393969,0.462474113447645,1]
["Solyc12g100320","SL3.0ch12",68069678,68071678,"-",135,441,60,394,23.438,13.216,-10.221640969163,0.000138362002657814,0.17472232616615,4.36975612256774,0.568073069070457,1]
["Solyc12g100330","SL3.0ch12",68068710,68070710,"+",143,359,87,331,28.486,20.813,-7.6726586477058,0.0164292352635657,0.0772383644320673,5.77562078176169,0.792176418295213,1]

{"sheet":"PHYA_vs_WT_IG_hypermethylated","index":1,"n_rows":6147,"n_cols":17,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYA","unmet_PHYA","X.met_WT","X.met_PHYA","X.diff_PHYA.ctrl","FDR_diff_PHYA.WT","logFC_PHYA","logCPM_PHYA","PValue_PHYA","padj_PHYA"]
["Solyc00g005000","SL3.0ch00",14479,16479,"+",339,623,317,353,35.239,47.313,12.074347596736,7.11514572537364e-06,0,-2.90243574957455,1,1]
["Solyc00g006170","SL3.0ch00",4099287,4101287,"+",581,89,360,22,86.716,94.241,7.5244197858873,0.00040260165193332,0,-3.91085760741443,1,1]
["Solyc00g005903","SL3.0ch00",4162096,4164096,"+",10854,933,12904,994,92.084,92.848,0.76339191024921,0.0382007647152322,0,-3.91085760741443,1,1]
["Solyc00g006480","SL3.0ch00",4232311,4234311,"+",258,85,243,47,75.219,83.793,8.5744445561476,0.0175558614023052,0,-3.91085760741443,1,1]
["Solyc00g006483","SL3.0ch00",4286251,4288251,"-",483,72,563,48,87.027,92.144,5.1169991595523,0.0116206213057507,0,-3.91085760741443,1,1]
["Solyc00g006867","SL3.0ch00",6390079,6392079,"+",122,566,232,369,17.733,38.602,20.86977131138,1.35890148841852E-15,-0.716583498540333,-0.558251759538668,0.439300483574759,1]
["Solyc00g007960","SL3.0ch00",6934602,6936602,"-",633,78,700,45,89.03,93.96,4.9301956786453,0.00273709013487051,0,-3.91085760741443,1,1]
["Solyc00g008020","SL3.0ch00",6991194,6993194,"-",65,15,312,28,81.25,91.765,10.514705882353,0.0244054961656456,0,-3.91085760741443,1,1]
["Solyc00g008055","SL3.0ch00",7069205,7071205,"-",189,21,288,9,90,96.97,6.969696969697,0.00482944675757777,0,-3.91085760741443,1,1]
["Solyc00g008160","SL3.0ch00",7159867,7161867,"-",753,68,1129,65,91.717,94.556,2.8386961196563,0.026527299907782,0,-3.91085760741443,1,1]
["Solyc00g008260","SL3.0ch00",7277831,7279831,"+",4111,324,5327,343,92.694,93.951,1.2561415229585,0.0246145718137528,0,-3.91085760741443,1,1]
["Solyc00g009050","SL3.0ch00",7822149,7824149,"-",1830,247,1725,93,88.108,94.884,6.7766405913581,6.36202090246919e-13,0.660193351424308,-1.83143939226503,0.569434108515139,1]
["Solyc00g009140","SL3.0ch00",7885380,7887380,"+",137,247,147,164,35.677,47.267,11.589797695606,0.00640389659440667,-1.06502388042226,3.36058126720056,0.0187793439339344,0.657884009626804]
["Solyc00g009141","SL3.0ch00",7897016,7899016,"-",1311,287,1466,248,82.04,85.531,3.4908717577252,0.0155497733992599,-0.0625573115545148,4.45932488007655,0.834802451100117,1]
["Solyc00g009540","SL3.0ch00",8210678,8212678,"-",696,94,576,52,88.101,91.72,3.6184794001451,0.0476600425691944,0,-3.91085760741443,1,1]
["Solyc00g009650","SL3.0ch00",8316387,8318387,"-",1412,108,1603,76,92.895,95.473,2.5787592865428,4.941674243287E-3,0,-3.91085760741443,1,1]
["Solyc00g010755","SL3.0ch00",8974152,8976152,"-",681,90,973,82,88.327,92.227,3.9006399026315,0.0130449934571721,-4.45443397778496,-2.03164656077158,0.000770249589099153,0.0883022028939055]
["Solyc00g010930","SL3.0ch00",9019959,9021959,"+",5857,493,5901,333,92.236,94.658,2.4221048403598,3.63932554289348e-07,0,-3.91085760741443,1,1]
["Solyc00g013110","SL3.0ch00",9719089,9721089,"-",399,2789,380,1737,12.516,17.95,5.4342453307129,5.67184564373731e-07,0,-3.91085760741443,1,1]
["Solyc00g013120","SL3.0ch00",9726388,9728388,"-",684,2694,705,1563,20.249,31.085,10.835988233857,1.35556882447071e-18,-2.56745195864087,-3.04179885224491,0.622599143275051,1]
["Solyc00g013130","SL3.0ch00",9727452,9729452,"-",1300,8725,1188,5163,12.968,18.706,5.7381345879515,2.48374823279326e-21,4.32030415116328,-3.50606629457688,0.210152148399007,1]
["Solyc00g013133","SL3.0ch00",9727784,9729784,"-",1395,9378,1336,5588,12.949,19.295,6.3461658189379,1.05974199622073e-27,1.79071469369683,-3.38388112100868,1,1]
["Solyc00g013137","SL3.0ch00",9730078,9732078,"-",720,1848,683,1107,28.037,38.156,10.119041403435,4.4194278915527e-11,1.78517126461561,-3.78951150766205,1,1]
["Solyc00g013140","SL3.0ch00",9737602,9739602,"-",2113,24259,1926,16521,8.012,10.441,2.4284363110073,5.36614807463205E-17,-1.42288903789774,-1.03249406421298,0.143394401034284,1]
["Solyc00g013150","SL3.0ch00",9736648,9738648,"+",1615,26180,1742,17505,5.81,9.051,3.2403636040662,3.08018845613753E-38,1.949302197351,-2.82133188471744,0.252768225477339,1]
["Solyc00g013155","SL3.0ch00",9739388,9741388,"-",782,9080,630,5621,7.929,10.078,2.1489613781041,1.85511269476648e-05,1.65604226818106,-3.15174374011737,0.621834682189895,1]
["Solyc00g013160","SL3.0ch00",9741809,9743809,"-",1609,19828,1448,11594,7.506,11.103,3.5968772080559,1.40796600227399E-27,-0.436294734417386,-1.09183566663966,0.683673736523445,1]
["Solyc00g013170","SL3.0ch00",9740381,9742381,"+",1920,19444,1616,11752,8.987,12.089,3.1014886477708,1.0946408991294E-18,1.38393701793661,-1.39935424343059,0.287352948828881,1]
["Solyc00g013180","SL3.0ch00",9744467,9746467,"-",1411,17453,1350,9202,7.48,12.794,5.313927359059,8.02776774354788e-47,2.99834583991169,-2.8354164280273,0.0403010159005686,0.925810363989427]
["Solyc00g014170","SL3.0ch00",9966728,9968728,"+",2461,369,2575,284,86.961,90.066,3.1053260610285,8.96431581065626E-4,0,-3.91085760741443,1,1]
["Solyc00g017760","SL3.0ch00",10585381,10587381,"-",8656,1414,9003,1316,85.958,87.247,1.2885342865471,0.0155530690105778,0,-3.91085760741443,1,1]
["Solyc00g019620","SL3.0ch00",10819131,10821131,"-",1055,9728,1037,7083,9.784,12.771,2.9870168286241,1.56159704466285e-09,0,-3.91085760741443,1,1]
["Solyc00g019630","SL3.0ch00",10819968,10821968,"-",3121,44685,2443,26506,6.528,8.439,1.9105096641131,4.80803198818339e-21,0,-3.91085760741443,1,1]
["Solyc00g019730","SL3.0ch00",10829313,10831313,"-",2075,19344,1916,14531,9.688,11.65,1.9618804613658,1.03924454041815E-8,0.391827045880683,-2.03310401875312,0.79951585261047,1]
["Solyc00g019740","SL3.0ch00",10830415,10832415,"-",2025,21365,2253,17244,8.658,11.556,2.8980779823331,1.40309409647947E-21,1.16188632376513,-1.30025223554522,0.455904315305682,1]
["Solyc00g019750","SL3.0ch00",10831749,10833749,"-",608,4932,631,3698,10.975,14.576,3.6013853342373,7.95943495211234e-07,4.76092977403651,-3.27883722145106,0.137499938225712,1]
["Solyc00g020010","SL3.0ch00",10853344,10855344,"-",2095,29643,1778,17183,6.601,9.377,2.7762225230041,1.51838966415081e-27,3.15340583565043,-3.39344519584705,0.432077598725847,1]
["Solyc00g020030","SL3.0ch00",10854853,10856853,"-",2726,31531,2243,20941,7.957,9.675,1.7172779696958,1.59646300673599e-11,0,-3.91085760741443,1,1]
["Solyc00g020040","SL3.0ch00",10854013,10856013,"+",2706,32408,2417,19825,7.706,10.867,3.1605005622572,1.79561569691206e-35,4.13841850337423,-2.82130233030166,0.189606538288062,1]
["Solyc00g022107","SL3.0ch00",11072272,11074272,"-",1033,434,1061,352,70.416,75.088,4.672649672845,0.0117801799209617,2.81072805525504,-2.03864792398076,0.0409906096929082,0.928673746447399]
["Solyc00g022920","SL3.0ch00",11136177,11138177,"+",1634,177,1930,147,90.226,92.922,2.696090095115,0.00646953604083562,0,-3.91085760741443,1,1]
["Solyc00g023710","SL3.0ch00",11199671,11201671,"-",1009,9226,977,5757,9.858,14.508,4.6501352461294,2.49741775371887e-18,1.78812851000518,-3.87428074584103,0.999999999999999,1]
["Solyc00g024150","SL3.0ch00",11224558,11226558,"+",765,389,678,276,66.291,71.069,4.7780212114276,0.0380060472311936,-0.604030214161418,5.42107019365619,0.0700169986363847,1]
["Solyc00g025290","SL3.0ch00",11313892,11315892,"+",1131,15608,1157,9499,6.757,10.858,4.1010567066858,2.94047874399047e-30,1.69591613151485,-1.17447558515912,0.360158670533773,1]
["Solyc00g025300","SL3.0ch00",11317263,11319263,"-",1405,15300,1105,9632,8.411,10.292,1.8808598284856,1.27764170862237e-06,3.37047371883956,-3.77033964572029,0.530746623377077,1]
["Solyc00g028550","SL3.0ch00",11530930,11532930,"-",146,88,168,51,62.393,76.712,14.319166373961,0.00320779610688177,0,-3.91085760741443,1,1]
["Solyc00g028560","SL3.0ch00",11532006,11534006,"-",587,144,631,77,80.301,89.124,8.8233361929715,2.15034982238652E-5,0,-3.91085760741443,1,1]
["Solyc00g028960","SL3.0ch00",11558082,11560082,"-",318,229,351,190,58.135,64.88,6.7445687618906,0.0436055107095006,0,-3.91085760741443,1,1]
["Solyc00g029070","SL3.0ch00",11558045,11560045,"+",318,229,351,190,58.135,64.88,6.7445687618906,0.0436055107095006,0,-3.91085760741443,1,1]
["Solyc00g030000","SL3.0ch00",11624489,11626489,"-",1027,1068,1779,856,49.021,67.514,18.492751785447,8.92838903739312e-36,0,-3.47695362856055,1,1]
["Solyc00g030100","SL3.0ch00",11623845,11625845,"+",2702,805,4120,1040,77.046,79.845,2.7990530566773,0.00521020916418785,3.84966074247846,-3.62703845704372,0.240531032983159,1]
["Solyc00g030820","SL3.0ch00",11677156,11679156,"-",476,297,487,224,61.578,68.495,6.9168108616583,0.0126467314176217,1.20180841992837,-2.52453426152791,0.384984730378705,1]
["Solyc00g042850","SL3.0ch00",12333955,12335955,"+",478,482,442,242,49.792,64.62,14.828216374269,2.79144231506282E-8,-1.91433136009914,-3.87150960665568,1,1]
["Solyc00g042854","SL3.0ch00",12376717,12378717,"+",1210,340,1165,249,78.065,82.39,4.3258657663001,0.00799029513558897,0,-3.91085760741443,1,1]
["Solyc00g044550","SL3.0ch00",12421120,12423120,"+",383,4474,312,2772,7.886,10.117,2.231205472626,2.22433182062133E-3,0,-3.91085760741443,1,1]
["Solyc00g047180","SL3.0ch00",12551302,12553302,"-",133,9379,154,6867,1.398,2.193,0.79518593085336,0.000544691557794234,0,-3.91085760741443,1,1]
["Solyc00g052540","SL3.0ch00",12815691,12817691,"-",762,748,844,647,50.464,56.606,6.142728334688,0.0023537696057874,0,-3.91085760741443,1,1]
["Solyc00g059500","SL3.0ch00",13133839,13135839,"+",762,658,802,548,53.662,59.407,5.7454355764215,0.00640985090079549,0.43390322468837,1.15725779970808,0.475250149893291,1]
["Solyc00g063110","SL3.0ch00",13302234,13304234,"-",3244,614,2863,428,84.085,86.995,2.9098162527238,1.72219170963225E-3,0,-3.91085760741443,1,1]
["Solyc00g065510","SL3.0ch00",13406910,13408910,"+",1085,144,1156,99,88.283,92.112,3.8283967466181,0.00414027639861921,0,-3.91085760741443,1,1]
["Solyc00g069880","SL3.0ch00",13590952,13592952,"+",1737,6462,2218,4233,21.186,34.382,13.196755887199,1.65110358499579E-68,0,-3.91085760741443,1,1]
["Solyc00g069883","SL3.0ch00",13619826,13621826,"+",524,52,966,58,90.972,94.336,3.3637152777778,0.0261054263455861,0,-3.91085760741443,1,1]
["Solyc00g072800","SL3.0ch00",13717078,13719078,"+",635,24025,513,16180,2.575,3.073,0.49812415604756,0.0071065418199925,0,-3.91085760741443,1,1]
["Solyc00g080750","SL3.0ch00",14049269,14051269,"-",496,831,549,658,37.378,45.485,8.107129411515,1.71624201957882E-4,4.31745568164539,-2.5472900468581,0.103077756503237,1]
["Solyc00g084870","SL3.0ch00",14214156,14216156,"+",4,11,21,1,26.667,95.455,68.787878787879,8.26977796385724e-05,0,-3.91085760741443,1,1]
["Solyc00g094540","SL3.0ch00",14584899,14586899,"+",1891,17390,2061,10607,9.808,16.269,6.4617574752026,2.96198097870366e-62,1.3738002682845,-3.06610814383915,0.566385728710128,1]
["Solyc00g094550","SL3.0ch00",14588391,14590391,"-",481,3928,437,2634,10.91,14.23,3.3203892544179,9.74064138491472e-05,0,-3.91085760741443,1,1]
["Solyc00g095465","SL3.0ch00",14631843,14633843,"+",88,17,77,4,83.81,95.062,11.252204585538,0.0350814564438467,0,-3.91085760741443,1,1]
["Solyc00g097260","SL3.0ch00",14687968,14689968,"+",1560,264,1499,185,85.526,89.014,3.487935991999,0.00544213281488884,0,-3.67847119540524,1,1]
["Solyc00g097960","SL3.0ch00",14713567,14715567,"+",561,460,397,233,54.946,63.016,8.0697417719945,0.00410187132913007,-0.331988712134669,0.75663908410327,0.627112577757088,1]
["Solyc00g099160","SL3.0ch00",14760965,14762965,"-",45,673,46,326,6.267,12.366,6.0981819270974,0.00237677004838975,0,-3.91085760741443,1,1]
["Solyc00g108555","SL3.0ch00",15117950,15119950,"-",163,415,221,399,28.201,35.645,7.4444692488001,0.0143457299343538,0,-3.91085760741443,1,1]
["Solyc00g110370","SL3.0ch00",15166354,15168354,"-",208,978,240,875,17.538,21.525,3.9867210127118,0.0332233871493588,1.78550522195527,-3.80122452643326,1,1]
["Solyc00g126000","SL3.0ch00",15683423,15685423,"+",915,29477,752,19757,3.011,3.667,0.65602221950953,0.000234893825704934,-0.149920612820243,-2.24813709755806,1,1]
["Solyc00g126010","SL3.0ch00",15683740,15685740,"+",765,27555,657,18090,2.701,3.505,0.80328954327608,5.59378689925025e-06,-0.32231736621214,-1.72909362160147,0.865637479605186,1]
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["Solyc12g089000","SL3.0ch12",65156340,65158340,"-",1244,591,1411,557,67.793,71.697,3.9042389402096,0.0189125482524209,0.754281577447016,6.54886427722432,0.0410228282092063,0.928673746447399]
["Solyc12g089010","SL3.0ch12",65156385,65158385,"+",1293,633,1483,569,67.134,72.271,5.1369987793992,1.42795616385332E-3,-0.407063864124036,0.738328733377381,0.567038689932464,1]
["Solyc12g089050","SL3.0ch12",65178673,65180673,"-",592,532,796,276,52.669,74.254,21.584692197376,3.2588692315124E-24,-2.18973056684463,-1.5217057320439,0.0201427481070191,0.673962408130833]
["Solyc12g089090","SL3.0ch12",65201221,65203221,"-",2339,293,2693,253,88.868,91.412,2.5443030269264,4.38536363294757E-3,0.0368380581957377,4.89079945952832,0.889333883609477,1]
["Solyc12g089143","SL3.0ch12",65211820,65213820,"+",723,884,757,734,44.991,50.771,5.780628596303,0.0038751298283826,0,-3.91085760741443,1,1]
["Solyc12g089210","SL3.0ch12",65306264,65308264,"-",611,495,619,380,55.244,61.962,6.71783899632,0.00522624574116379,-0.550537247959727,4.90770467388958,0.330919465662996,1]
["Solyc12g089310","SL3.0ch12",65427250,65429250,"-",567,382,507,274,59.747,64.917,5.169671154622,0.0486257919318872,-2.02491790522747,-3.63514349414427,0.576406272703442,1]
["Solyc12g094510","SL3.0ch12",65710291,65712291,"+",888,755,763,447,54.047,63.058,9.0103771069853,1.01675607723522E-5,0.548756961475794,3.24946178949661,0.155936352459813,1]
["Solyc12g094540","SL3.0ch12",65723942,65725942,"+",895,591,961,404,60.229,70.403,10.174128249498,1.36689865243094e-07,0,-3.91085760741443,1,1]
["Solyc12g094580","SL3.0ch12",65746008,65748008,"-",381,373,449,310,50.531,59.157,8.6262812649619,0.00241935924214043,-0.272694980929609,1.64452435863474,0.68114174764343,1]
["Solyc12g094585","SL3.0ch12",65745825,65747825,"-",413,513,487,439,44.6,52.592,7.9913606911447,0.00215135045587431,0,-3.57038043008473,1,1]
["Solyc12g094590","SL3.0ch12",65752968,65754968,"-",1985,369,1992,298,84.325,86.987,2.6623456125966,0.0219161479637711,0.172944977704586,4.98303042859378,0.553790282110723,1]
["Solyc12g094660","SL3.0ch12",65804016,65806016,"-",534,297,555,225,64.26,71.154,6.8939183560122,0.00839194145399375,-0.24105567673772,2.42754636493707,0.760347387225659,1]
["Solyc12g095950","SL3.0ch12",66038500,66040500,"+",1340,307,1137,166,81.36,87.26,5.9001202679725,6.94947452680593e-05,0,-3.91085760741443,1,1]
["Solyc12g095970","SL3.0ch12",66051031,66053031,"-",1508,2290,1301,1701,39.705,43.338,3.6326668652354,0.00691272894580819,-3.28403146616092,-3.79436498907682,0.5290256631869,1]
["Solyc12g096050","SL3.0ch12",66116544,66118544,"-",506,132,539,91,79.31,85.556,6.2452107279693,0.00958787349249091,0.330145653913225,4.9442313299813,0.233021741266314,1]
["Solyc12g096100","SL3.0ch12",66137041,66139041,"+",232,331,195,206,41.208,48.628,7.42061365237,0.0441861098457055,-1.31839663694796,2.30546296431206,0.0923452541186286,1]
["Solyc12g096150","SL3.0ch12",66162179,66164179,"+",1109,563,1081,433,66.328,71.4,5.0725130046204,5.83168402029935E-3,0.198212785642255,7.31954264768649,0.572313613134213,1]
["Solyc12g096200","SL3.0ch12",66202568,66204568,"-",388,472,480,421,45.116,53.274,8.1578607748497,2.21127741886081E-3,-4.85326930863142,-3.51490032501125,0.072908613103688,1]
["Solyc12g096270","SL3.0ch12",66249754,66251754,"-",930,343,929,278,73.056,76.968,3.9119147210791,0.0452494934238012,0.190344334067567,4.04983298151257,0.577570856078539,1]
["Solyc12g096340","SL3.0ch12",66280695,66282695,"+",1703,730,1634,577,69.996,73.903,3.9073213687197,0.00815258485463887,0.277074707910322,6.87808856816368,0.356651989357124,1]
["Solyc12g096380","SL3.0ch12",66306721,66308721,"-",1585,850,1471,416,65.092,77.954,12.862022549183,7.72092713179263E-19,0,-3.91085760741443,1,1]
["Solyc12g096430","SL3.0ch12",66344617,66346617,"-",1450,396,1225,149,78.548,89.156,10.60753728507,1.57510362415786e-14,-1.45598576609876,-0.111257441783025,0.0355262811577911,0.87937994771756]
["Solyc12g096440","SL3.0ch12",66345184,66347184,"+",1665,103,1583,59,94.174,96.407,2.2326128052645,0.00578344556990306,0,-3.91085760741443,1,1]
["Solyc12g096620","SL3.0ch12",66437455,66439455,"-",1397,798,1327,520,63.645,71.846,8.2015902164811,2.89548887649161E-7,0,-3.91085760741443,1,1]
["Solyc12g096650","SL3.0ch12",66452880,66454880,"+",1386,1011,1112,698,57.822,61.436,3.6141862410887,0.0350914070989313,-0.175150524785365,5.85706940522773,0.503491056984744,1]
["Solyc12g096830","SL3.0ch12",66567112,66569112,"+",159,321,201,239,33.125,45.682,12.556818181818,4.56621513472615E-4,0.052691854739819,4.56684453857291,0.882682714330084,1]
["Solyc12g096880","SL3.0ch12",66606787,66608787,"+",659,764,789,658,46.311,54.527,8.2159953882339,6.44700735956993e-05,-0.469245073269051,-0.0510713787909716,0.689938846360332,1]
["Solyc12g096910","SL3.0ch12",66617457,66619457,"-",1184,3873,1057,2470,23.413,29.969,6.5557212562722,1.94634785057549e-10,0,-3.22930841105345,1,1]
["Solyc12g096940","SL3.0ch12",66636744,66638744,"-",1232,502,1356,373,71.05,78.427,7.3772400124613,4.58576987214335e-06,-0.799428840608225,-0.924439456612844,0.398320475367395,1]
["Solyc12g097020","SL3.0ch12",66673013,66675013,"-",182,528,257,494,25.634,34.221,8.5872357982783,1.33849142409699E-3,0.955197665078794,-1.8213874379535,0.412021499858458,1]
["Solyc12g098090","SL3.0ch12",66722319,66724319,"+",58,8,57,0,87.879,100,12.121212121212,0.015792514270073,1.90182834984185,-3.72875791225928,0.999999999999998,1]
["Solyc12g098100","SL3.0ch12",66729036,66731036,"+",676,118,778,97,85.139,88.914,3.7757466714646,0.0413514567739582,-1.13767849493389,-3.60253566581618,0.795122463652444,1]
["Solyc12g098180","SL3.0ch12",66787244,66789244,"+",1470,742,1796,279,66.456,86.554,20.098520664938,6.13482551466869e-53,2.16290975582041,-1.11831569942161,0.220533844271596,1]
["Solyc12g098195","SL3.0ch12",66795127,66797127,"-",1435,355,1464,285,80.168,83.705,3.5373765056489,0.0149973079282499,0,-3.91085760741443,1,1]
["Solyc12g098260","SL3.0ch12",66828530,66830530,"-",778,434,958,292,64.191,76.64,12.448580858086,1.90707106939417E-10,0,-3.91085760741443,1,1]
["Solyc12g098290","SL3.0ch12",66841819,66843819,"+",508,487,520,261,51.055,66.581,15.526029636016,6.23072412455983e-10,0,-3.91085760741443,1,1]
["Solyc12g098320","SL3.0ch12",66858577,66860577,"-",295,99,272,45,74.873,85.804,10.931319957085,0.00118290606722871,-1.75809177187986,-1.26208373412179,0.283796042132434,1]
["Solyc12g098380","SL3.0ch12",66883857,66885857,"+",80,240,132,126,25,51.163,26.162790697674,1.38939359504984E-9,0.313909949583945,4.63040202445594,0.348637314148858,1]
["Solyc12g098400","SL3.0ch12",66897945,66899945,"+",2202,696,2247,482,75.983,82.338,6.3544158402922,5.28826226197224e-08,-0.0598896653220033,-1.37133092752664,1,1]
["Solyc12g098440","SL3.0ch12",66918688,66920688,"+",659,407,756,380,61.82,66.549,4.7294083450044,0.0376858521277899,-0.0359216502671896,5.45579468082755,0.900740266803326,1]
["Solyc12g098480","SL3.0ch12",66959918,66961918,"-",1018,1006,1097,787,50.296,58.227,7.9307335330598,5.10962370176314e-06,-1.13533114475625,-3.76700870201958,0.79954920214593,1]
["Solyc12g098510","SL3.0ch12",66975596,66977596,"-",963,571,1032,519,62.777,66.538,3.7606641465278,0.0492446571858087,-0.373165627167695,3.37595498466805,0.34764691260332,1]
["Solyc12g098615","SL3.0ch12",67037193,67039193,"-",1499,888,1331,670,62.798,66.517,3.7182497984355,0.0229170265702812,0.476350951609354,-2.24139100381161,0.759959462526656,1]
["Solyc12g098690","SL3.0ch12",67092874,67094874,"+",168,176,192,102,48.837,65.306,16.468913146654,0.000144398358285609,-0.219327857443518,5.86465370565277,0.425249160815067,1]
["Solyc12g098750","SL3.0ch12",67138754,67140754,"-",987,319,1016,180,75.574,84.95,9.3755601878646,4.37591334462066e-08,0,-3.91085760741443,1,1]
["Solyc12g098820","SL3.0ch12",67171113,67173113,"+",1938,964,2131,905,66.782,70.191,3.4095108638902,0.0111727092901761,0.264873039056208,6.12133235883969,0.317285359330068,1]
["Solyc12g098870","SL3.0ch12",67234881,67236881,"-",1491,745,1609,683,66.682,70.201,3.5191238405655,0.0233029926705351,1.79554712739018,-3.80018127964947,1,1]
["Solyc12g098960","SL3.0ch12",67281482,67283482,"+",1468,745,1485,639,66.335,69.915,3.579962777731,0.0242903486941088,-0.508130078048946,3.07544957573628,0.400097697413764,1]
["Solyc12g099140","SL3.0ch12",67381709,67383709,"+",488,411,561,362,54.283,60.78,6.4975288541379,0.011992701750721,4.47672603536105e-05,1.99885098853957,1,1]
["Solyc12g099150","SL3.0ch12",67388430,67390430,"-",1039,908,949,617,53.364,60.6,7.2361054535222,9.16646556424336e-05,-1.80441672421593,-3.87399169536477,0.999999999999999,1]
["Solyc12g099220","SL3.0ch12",67421279,67423279,"-",1788,399,1847,324,81.756,85.076,3.3201719384909,0.00832997695005156,0,-3.91085760741443,1,1]
["Solyc12g099270","SL3.0ch12",67455648,67457648,"-",846,613,765,315,57.985,70.833,12.848412154444,3.65783106879827e-10,-0.161370807643022,6.00857272405455,0.633001266435113,1]
["Solyc12g099300","SL3.0ch12",67474325,67476325,"+",1073,794,904,528,57.472,63.128,5.656611598687,0.00324425287810105,-1.62029159439233,-3.42511387267245,0.628892290603587,1]
["Solyc12g099330","SL3.0ch12",67503363,67505363,"-",772,272,809,205,73.946,79.783,5.8366773220885,0.00475437999568773,0.797205973872041,6.74897606902199,0.0224328055238896,0.704925469528395]
["Solyc12g099370","SL3.0ch12",67523898,67525898,"+",1062,902,1197,858,54.073,58.248,4.1748554268809,0.0177752970158634,-0.43078226220304,4.27854115802709,0.248436072341397,1]
["Solyc12g099460","SL3.0ch12",67587479,67589479,"-",488,456,444,198,51.695,69.159,17.463963250436,6.78241217668905e-11,0,-3.91085760741443,1,1]
["Solyc12g099490","SL3.0ch12",67600934,67602934,"+",1795,492,1665,317,78.487,84.006,5.5189534847294,2.6088113380147e-05,0.0669862860757885,6.299373887455,0.819935035276217,1]
["Solyc12g099510","SL3.0ch12",67613771,67615771,"-",279,42,288,24,86.916,92.308,5.391804457225,0.0472538417542568,0.0274203942304428,5.68246411537423,0.916974101297134,1]
["Solyc12g099540","SL3.0ch12",67641984,67643984,"-",349,223,294,137,61.014,68.213,7.1994710625801,0.036567510091188,0.486040594270421,0.246625329534406,0.622926030643148,1]
["Solyc12g099670","SL3.0ch12",67708881,67710881,"-",1084,208,1072,110,83.901,90.694,6.7928106321342,2.90366151692344E-6,0,-3.91085760741443,1,1]
["Solyc12g099680","SL3.0ch12",67708958,67710958,"+",989,200,988,107,83.179,90.228,7.0491683660342,5.48964310874206e-06,0,-3.91085760741443,1,1]
["Solyc12g099690","SL3.0ch12",67712386,67714386,"+",848,404,757,294,67.732,72.027,4.2950119010345,0.0449416492420018,0,-3.91085760741443,1,1]
["Solyc12g099710","SL3.0ch12",67720254,67722254,"+",167,67,154,24,71.368,86.517,15.149332565063,0.00103120343765752,-0.150755330513768,5.2151773837404,0.631229279611536,1]
["Solyc12g099780","SL3.0ch12",67768996,67770996,"-",424,205,372,112,67.409,76.86,9.4509190765875,0.00198520735189974,-0.336206976201271,-0.490122934462841,0.780327747430033,1]
["Solyc12g099830","SL3.0ch12",67801931,67803931,"-",96,325,130,253,22.803,33.943,11.139708390442,1.73772863365749E-3,-0.333157422222189,3.03632404570816,0.665921599489765,1]
["Solyc12g099850","SL3.0ch12",67807817,67809817,"-",69,89,35,6,43.671,85.366,41.694967582587,7.69552339811137e-06,0,-3.91085760741443,1,1]
["Solyc12g099870","SL3.0ch12",67816286,67818286,"-",59,88,153,93,40.136,62.195,22.059067529451,0.00012870107691827,-0.198764855062287,-2.7293305007382,0.961332948506248,1]
["Solyc12g099880","SL3.0ch12",67817606,67819606,"-",99,80,117,44,55.307,72.671,17.363544883584,0.00310698741293308,-1.29699202825936,-3.14200809435297,0.500606325837017,1]
["Solyc12g099970","SL3.0ch12",67880159,67882159,"+",298,343,376,302,46.49,55.457,8.9673675442593,0.0033752928156664,-0.082418823935559,5.37648289189802,0.826543505971278,1]
["Solyc12g099990","SL3.0ch12",67892678,67894678,"-",227,244,274,144,48.195,65.55,17.354910147401,1.8465986236257e-06,0.296387362290249,6.64603033863791,0.40512343324868,1]
["Solyc12g100000","SL3.0ch12",67893948,67895948,"+",272,96,291,9,73.913,97,23.086956521739,7.90821059830614e-17,0.109554329148134,5.03909922455397,0.70403666149485,1]
["Solyc12g100060","SL3.0ch12",67928818,67930818,"-",97,273,215,241,26.216,47.149,20.932906590801,8.64339016052304e-09,0.68605597388861,8.07136467742816,0.0813663004379106,1]
["Solyc12g100210","SL3.0ch12",68000239,68002239,"+",0,53,40,31,0,56.338,56.338028169014,5.3525157223589e-12,0,-3.91085760741443,1,1]
["Solyc12g100220","SL3.0ch12",68000736,68002736,"+",0,63,18,33,0,35.294,35.294117647059,5.8792176275992e-07,0,-3.57601201221185,1,1]

{"sheet":"PHYA_vs_WT_BK_hypomethylated","index":2,"n_rows":5637,"n_cols":17,"rows_kept":5637}
["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYA","unmet_PHYA","X.met_WT","X.met_PHYA","X.diff_PHYA.ctrl","FDR_diff_PHYA.WT","logFC_PHYA","logCPM_PHYA","PValue_PHYA","padj_PHYA"]
["Solyc00g005040","SL3.0ch00",546343,548343,"+",1599,146,1728,279,91.633,86.099,-5.5345831138294,9.74909872239698e-07,-0.0121004254931647,1.9093515385174,0.990056668962073,1]
["Solyc00g005090","SL3.0ch00",1061916,1063916,"-",44,1,45,10,97.778,81.818,-15.959595959596,0.0413394130319084,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g005440","SL3.0ch00",2365409,2367409,"-",670,81,709,130,89.214,84.505,-4.7090172975564,0.0155492011696986,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g006680","SL3.0ch00",5629656,5631656,"+",23554,2500,6726,1041,90.405,86.597,-3.8074026541957,3.75568446201071e-19,-0.137645912798229,-3.31507523247684,1,1]
["Solyc00g006820","SL3.0ch00",5819900,5821900,"+",689,348,564,390,66.442,59.119,-7.3221617753195,2.97777366001264E-3,-1.12822449605065,1.61308375064248,0.333196526132593,1]
["Solyc00g006840","SL3.0ch00",6186900,6188900,"+",230,126,148,154,64.607,49.007,-15.600119056477,0.000369882307559681,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g008580","SL3.0ch00",7582182,7584182,"+",118699,11008,56441,5701,91.513,90.826,-0.68732923352673,5.64988653071256e-06,0.871766617432193,5.85972231049318,0.173186032593562,0.748401354815333]
["Solyc00g009110","SL3.0ch00",7871111,7873111,"+",106,904,70,1240,10.495,5.344,-5.1515380545688,2.83047456810444E-5,0.250780271173263,3.27195840491963,0.697213681643249,1]
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["Solyc12g099420","SL3.0ch12",67550697,67552697,"+",31,115,0,80,21.233,0,-21.232876712329,5.97987024802373e-06,-0.581418301735325,3.79986932988691,0.0846341326118266,0.511869065820056]
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["Solyc12g099460","SL3.0ch12",67587479,67589479,"-",420,222,393,289,65.421,57.625,-7.7959273165785,0.0109259129011226,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g099470","SL3.0ch12",67596659,67598659,"-",1034,743,1019,1029,58.188,49.756,-8.4320978562887,1.94712040530565e-06,0.156892258015556,6.04285080568767,0.559253224694227,1]
["Solyc12g099480","SL3.0ch12",67595233,67597233,"+",724,698,652,778,50.914,45.594,-5.3197997501795,0.0130929761419602,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g099520","SL3.0ch12",67627400,67629400,"-",386,245,410,354,61.173,53.665,-7.5078202139046,0.0144066136543771,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g099590","SL3.0ch12",67668359,67670359,"-",816,456,670,463,64.151,59.135,-5.0159036786624,0.0262830570282814,2.17521870561079,-0.0443922890031553,0.081019695156905,0.501368937088612]
["Solyc12g099600","SL3.0ch12",67668528,67670528,"+",824,539,681,648,60.455,51.242,-9.2133439547937,1.37533050572275E-5,0.612488759963513,3.96312420906162,0.0893445124661166,0.526991181050141]
["Solyc12g099720","SL3.0ch12",67724258,67726258,"+",201,123,150,137,62.037,52.265,-9.7722286746677,0.0360806941060958,-5.12548240610387e-15,-3.79760289006955,1,1]
["Solyc12g099870","SL3.0ch12",67816286,67818286,"-",70,19,15,15,78.652,50,-28.651685393258,0.0122880869179285,-5.12548240610387e-15,-2.7293305007382,1,1]
["Solyc12g099970","SL3.0ch12",67880159,67882159,"+",307,437,245,468,41.263,34.362,-6.9015895278167,0.0172483566021773,-0.0924949632432976,5.37648289189802,0.806851740049344,1]
["Solyc12g100120","SL3.0ch12",67944380,67946380,"+",274,560,281,838,32.854,25.112,-7.742010145235,0.000923870731920418,0.35639662799479,5.98512636062317,0.212428742238262,0.824631132231186]
["Solyc12g100140","SL3.0ch12",67956977,67958977,"+",180,352,136,436,33.835,23.776,-10.058362689942,0.00104956100388804,-0.445120507283949,3.81081318018535,0.244161981157403,0.879537221376206]
["Solyc12g100170","SL3.0ch12",67973773,67975773,"+",85,109,13,111,43.814,10.484,-33.330562021949,1.64757923578735E-9,6.34061938739743,-0.840707422538963,4.2680800989468E-3,0.070156566626438]
["Solyc12g100280","SL3.0ch12",68030644,68032644,"-",164,313,152,408,34.382,27.143,-7.2386942198263,0.0274376263921323,-5.12548240610387e-15,-3.76922177802069,1,1]
["Solyc12g100310","SL3.0ch12",68065572,68067572,"-",968,297,681,337,76.522,66.896,-9.6258648671735,3.43713346856655e-06,-0.118163466870582,5.72997225902678,0.701329744044597,1]

{"sheet":"PHYA_vs_WT_BK_hypermethylated","index":3,"n_rows":5780,"n_cols":17,"rows_kept":5780}
["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYA","unmet_PHYA","X.met_WT","X.met_PHYA","X.diff_PHYA.ctrl","FDR_diff_PHYA.WT","logFC_PHYA","logCPM_PHYA","PValue_PHYA","padj_PHYA"]
["Solyc00g005907","SL3.0ch00",4172134,4174134,"+",10150,609,14656,708,94.34,95.392,1.0522024040516,0.000676994881874597,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g006480","SL3.0ch00",4232311,4234311,"+",143,113,157,38,55.859,80.513,24.653445512821,3.17324739422572E-7,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g006867","SL3.0ch00",6390079,6392079,"+",86,381,283,320,18.415,46.932,28.516589074613,2.65422762836024e-21,-1.16640477726207,-0.558251759538668,0.264940951927419,0.916391835271242]
["Solyc00g006870","SL3.0ch00",6404880,6406880,"+",753,358,1118,372,67.777,75.034,7.2567793692121,0.000259548997858454,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g007550","SL3.0ch00",6650039,6652039,"-",773,485,998,488,61.447,67.16,5.7134206488969,0.00636414204857918,-5.12548240610387e-15,-3.43052628147651,1,1]
["Solyc00g007930","SL3.0ch00",6919608,6921608,"-",964,111,1901,160,89.674,92.237,2.562359658328,0.0385555118512995,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g008260","SL3.0ch00",7277831,7279831,"+",1707,153,2768,139,91.774,95.218,3.4442447041069,1.69066572374551E-5,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g008570","SL3.0ch00",7584122,7586122,"-",197518,13164,125446,7376,93.752,94.447,0.69498250379873,1.8364348472832e-15,0.733882919003458,4.3254472958713,0.197972540967892,0.798869655636904]
["Solyc00g009020","SL3.0ch00",7793998,7795998,"+",1301,193,1260,136,87.082,90.258,3.1762196829342,0.0199109364937799,0.411952968841422,7.62400916820391,0.108978270167646,0.588988250203753]
["Solyc00g009050","SL3.0ch00",7822149,7824149,"-",1730,256,2022,204,87.11,90.836,3.7258111361742,0.000530545023338123,1.89759751253306,-1.83143939226503,1,1]
["Solyc00g009060","SL3.0ch00",7824190,7826190,"+",811,578,1166,686,58.387,62.959,4.5716342692585,0.0208954909561206,-0.130416019513381,4.70453708216914,0.655765283367326,1]
["Solyc00g009140","SL3.0ch00",7885380,7887380,"+",90,147,103,100,37.975,50.739,12.764232711854,0.0216823363609386,-0.0992773001808349,3.36058126720056,0.823748897546176,1]
["Solyc00g009141","SL3.0ch00",7897016,7899016,"-",1261,494,1516,324,71.852,82.391,10.539452495974,1.30369458972677e-12,0.481764779234876,4.45932488007655,0.105163748170281,0.57789167991314]
["Solyc00g009142","SL3.0ch00",8038913,8040913,"+",1751,112,4174,202,93.988,95.384,1.3957211589885,0.0446030522247498,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g009143","SL3.0ch00",8048016,8050016,"+",2522,193,3438,185,92.891,94.894,2.0023900911356,0.00365840916581935,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g009540","SL3.0ch00",8210678,8212678,"-",435,85,463,53,83.654,89.729,6.0748360166965,0.0121405911392215,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g011175","SL3.0ch00",9159658,9161658,"+",780,52,971,39,93.75,96.139,2.3886138613861,0.0448030709065329,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g011673","SL3.0ch00",9365433,9367433,"+",887,92,922,63,90.603,93.604,3.0014051425105,0.032207167806033,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g011870","SL3.0ch00",9381599,9383599,"-",792,76,779,28,91.244,96.53,5.2861197243018,4.33581851863921E-5,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g012700","SL3.0ch00",9627415,9629415,"-",998,102,2143,155,90.727,93.255,2.5277316243374,0.0236457777438503,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g012704","SL3.0ch00",9696804,9698804,"-",8216,1073,12407,1324,88.449,90.358,1.9088822598689,2.74016382830535e-05,-2.0162764433785,-3.86688671544589,1,1]
["Solyc00g012708","SL3.0ch00",9708087,9710087,"-",4667,569,5798,597,89.133,90.665,1.5316558068248,0.015996823815299,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g014395","SL3.0ch00",10046778,10048778,"+",3937,397,4496,344,90.84,92.893,2.0526911943617,0.00144140700755892,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g016790","SL3.0ch00",10444493,10446493,"+",4336,446,7023,460,90.673,93.853,3.1793744337157,1.55853307282988E-9,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g017540","SL3.0ch00",10558570,10560570,"+",187,49,170,17,79.237,90.909,11.671802773498,0.00381617878890216,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g017760","SL3.0ch00",10585381,10587381,"-",6034,959,6769,856,86.286,88.774,2.487484205517,3.76227732887701e-05,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g024570","SL3.0ch00",11259566,11261566,"+",5007,550,5944,471,90.103,92.658,2.5552598724955,5.99424775465232e-06,-5.12548240610387e-15,-3.7595815468704,1,1]
["Solyc00g028420","SL3.0ch00",11523328,11525328,"-",216,41,292,24,84.047,92.405,8.3583706841354,6.68091233487256E-3,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g028550","SL3.0ch00",11530930,11532930,"-",119,76,192,41,61.026,82.403,21.377792450754,7.12605996124224e-06,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g028560","SL3.0ch00",11532006,11534006,"-",544,155,644,110,77.825,85.411,7.5856756336259,1.00457588266374E-3,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g030820","SL3.0ch00",11677156,11679156,"-",341,249,598,272,57.797,68.736,10.939022014416,0.000133183442383491,1.89691500805926,-2.52453426152791,0.154959839211854,0.708957533100505]
["Solyc00g031050","SL3.0ch00",11688656,11690656,"-",718,81,644,42,89.862,93.878,4.0152231105208,0.0153112375046928,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g031700","SL3.0ch00",11718760,11720760,"+",1101,89,1000,54,92.521,94.877,2.3556519381946,0.0470095545536032,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g032943","SL3.0ch00",11803226,11805226,"+",6246,636,7689,645,90.759,92.261,1.5021187145482,0.00325776714636452,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g036960","SL3.0ch00",12027754,12029754,"-",203,33,253,14,86.017,94.757,8.7396051545737,0.00373013542013993,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g036968","SL3.0ch00",12148869,12150869,"+",260,36,279,13,87.838,95.548,7.7101073676416,0.00313192701707099,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g052540","SL3.0ch00",12815691,12817691,"-",664,884,722,804,42.894,47.313,4.4191803739489,0.0322883296319529,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g053440","SL3.0ch00",12855297,12857297,"+",171,1006,254,925,14.528,21.544,7.0152188936522,6.81077833147421e-05,0.684765641295492,6.45674876136853,0.136598059955409,0.662879734204547]
["Solyc00g063510","SL3.0ch00",13319570,13321570,"-",373,31,259,5,92.327,98.106,5.7793279327933,2.87159828208666E-3,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g069680","SL3.0ch00",13584480,13586480,"-",130,35,324,42,78.788,88.525,9.7367113760556,0.0129685273242603,2.61224229630689,-3.83030431092775,0.582151667333805,1]
["Solyc00g072405","SL3.0ch00",13709986,13711986,"+",638,95,1163,104,87.04,91.792,4.7520703426577,0.00298571135600304,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g084870","SL3.0ch00",14214156,14216156,"+",1,20,16,2,4.762,88.889,84.126984126984,6.96022703002807e-07,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc06g024210","SL3.0ch00",14392228,14394228,"-",1375,164,1570,141,89.344,91.759,2.4154754485842,0.0384296874360259,0.428673579856626,5.08387758340171,0.471987284015418,1]
["Solyc00g090650","SL3.0ch00",14441347,14443347,"-",672,101,837,70,86.934,92.282,5.348225887199,0.0014310920672151,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g090660","SL3.0ch00",14441661,14443661,"-",691,107,868,76,86.591,91.949,5.357673845631,1.25598441320231E-3,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g090870","SL3.0ch00",14449470,14451470,"-",894,95,986,61,90.394,94.174,3.7794922755854,0.00489310620104256,-0.488989374936261,2.38533792411707,0.22981701949585,0.855002919644979]
["Solyc00g092870","SL3.0ch00",14521606,14523606,"+",6695,413,11833,622,94.19,95.006,0.81637620814787,0.032577005346921,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g095860","SL3.0ch00",14638287,14640287,"-",101,13,239,12,88.596,95.219,6.6226322779059,0.0491039335331848,-5.12548240610387e-15,-3.8720324817543,1,1]
["Solyc00g097260","SL3.0ch00",14687968,14689968,"+",1528,209,1728,161,87.968,91.477,3.5092114362063,0.00205035431435468,4.04213719801562,-3.67847119540524,0.286976635442984,0.951180874976706]
["Solyc00g104200","SL3.0ch00",14939878,14941878,"+",305,63,162,17,82.88,90.503,7.6223585134807,0.0401066092615793,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g109450","SL3.0ch00",15133864,15135864,"-",47,27,180,25,63.514,87.805,24.291364535267,9.89811653627615e-05,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g111170","SL3.0ch00",15191789,15193789,"+",256,60,306,41,81.013,88.184,7.1717798124977,0.0279278581753045,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g112505","SL3.0ch00",15242310,15244310,"-",6793,551,7837,538,92.497,93.576,1.0788427145319,0.019701069179294,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g112700","SL3.0ch00",15242886,15244886,"+",7937,596,9020,565,93.015,94.105,1.0900208164186,0.0084167581828087,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g112930","SL3.0ch00",15254586,15256586,"-",4849,292,5084,225,94.32,95.762,1.441742558476,2.61104198787202E-3,-0.455540264125578,1.28322998838678,0.623296193546477,1]
["Solyc00g117657","SL3.0ch00",15476194,15478194,"+",840,76,842,36,91.703,95.9,4.1967154410082,0.00115513921015387,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g123030","SL3.0ch00",15583143,15585143,"+",635,100,870,94,86.395,90.249,3.8544048324724,0.0300851287679067,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g127545","SL3.0ch00",15727898,15729898,"+",805,135,981,72,85.638,93.162,7.5240952900527,4.64085652529871e-07,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g127560","SL3.0ch00",15733087,15735087,"-",225,33,242,17,87.209,93.436,6.2269911107121,0.0364010926599172,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g140060","SL3.0ch00",16137850,16139850,"-",657,314,1138,315,67.662,78.321,10.658511847004,7.71032163392198e-08,0.0979054031316517,3.74195134455469,0.864137833481655,1]
["Solyc00g143770","SL3.0ch00",16255415,16257415,"-",160,21,249,10,88.398,96.139,7.7412060837475,6.92244198175392E-3,0.317932899437831,1.54554544283966,0.630279553080024,1]
["Solyc00g147570","SL3.0ch00",16374656,16376656,"-",661,54,812,39,92.448,95.417,2.9696038391691,0.0367342256305686,-5.12548240610387e-15,-3.6553947118083,1,1]
["Solyc00g160785","SL3.0ch00",16794746,16796746,"-",438,69,715,63,86.391,91.902,5.5117810803,0.00586725604924724,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g164580","SL3.0ch00",16884713,16886713,"+",582,979,993,1124,37.284,46.906,9.6222066145238,7.33994503545195e-08,-3.69899676234618,-3.69127326972372,0.264195974156884,0.914968742288998]
["Solyc00g170210","SL3.0ch00",17052994,17054994,"-",400,93,523,32,81.136,94.234,13.098331597317,1.14577800010149E-9,0.537305322268081,2.98697328897658,0.208676499330388,0.817304951362089]
["Solyc00g171710","SL3.0ch00",17092060,17094060,"+",1304,94,1440,71,93.276,95.301,2.0250163559742,0.0400469462333935,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g171810","SL3.0ch00",17098009,17100009,"-",19,1372,219,3048,1.366,6.703,5.3374738166582,2.32196969841284e-15,1.21578855294162,1.65316464502327,0.0485788671452621,0.370857816825783]
["Solyc00g173430","SL3.0ch00",17139051,17141051,"+",362,52,342,28,87.44,92.432,4.9928189058624,0.047296813596975,-5.12548240610387e-15,-3.87171044088613,1,1]
["Solyc00g183050","SL3.0ch00",17411773,17413773,"+",88,271,158,300,24.513,34.498,9.985281774945,0.00654797982341976,0.469087213279178,-2.0440640677512,0.799555432003009,1]
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["Solyc12g100210","SL3.0ch12",68000239,68002239,"+",0,44,38,1,0,97.436,97.435897435897,3.89046478900474e-21,-5.12548240610387e-15,-3.91085760741443,1,1]
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{"sheet":"PHYB1B2_vs_WT_IG_hypomethylated","index":4,"n_rows":4594,"n_cols":17,"rows_kept":4594}
["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYB1B2","unmet_PHYB1B2","X.met_WT","X.met_PHYB1B2","X.diff_PHYB1B2.ctrl","FDR_diff_PHYB1B2.WT","logFC_PHYB1B2","logCPM_PHYB1B2","PValue_PHYB1B2","padj_PHYB1B2"]
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["Solyc00g005287","SL3.0ch00",2357974,2359974,"-",658,94,479,107,87.5,81.741,-5.759385665529,0.00788745371266733,3.17169637084209,-3.34939923908411,0.389562697174123,1]
["Solyc00g005430","SL3.0ch00",2358571,2360571,"-",731,108,551,121,87.128,81.994,-5.133485158068,0.0107341303314169,-5.12548240610387e-15,-3.65100820910541,1,1]
["Solyc00g005445","SL3.0ch00",2377779,2379779,"-",486,42,335,49,92.045,87.24,-4.8058712121212,0.0278552883203864,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g005840","SL3.0ch00",3431254,3433254,"-",945,128,740,135,88.071,84.571,-3.4994008787112,0.0386110560521704,-0.653846447004672,3.84266514413295,0.115076537844015,0.947091027520648]
["Solyc00g005907","SL3.0ch00",4172134,4174134,"+",15734,958,14492,1014,94.261,93.461,-0.80012780161412,0.00565827965611022,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g006680","SL3.0ch00",5629656,5631656,"+",30949,3494,2824,852,89.856,76.823,-13.033070329219,2.49256647089497e-99,-1.58147430974479,-3.31507523247684,0.5532990675680171,1]
["Solyc00g008000","SL3.0ch00",6974073,6976073,"-",619,39,635,87,94.073,87.95,-6.1228098241124,0.000231344701343906,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g008570","SL3.0ch00",7584122,7586122,"-",359319,21894,16114,3703,94.257,81.314,-12.942730784786,0,-0.00547514378687348,4.3254472958713,0.994264661359307,1]
["Solyc00g008580","SL3.0ch00",7582182,7584182,"+",197233,18048,12407,3403,91.617,78.476,-13.14089006087,0,-0.179712988461231,5.85972231049318,0.777965643223827,1]
["Solyc00g009142","SL3.0ch00",8038913,8040913,"+",4549,236,3839,251,95.068,93.863,-1.2048399005654,0.020757999585813,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g009760","SL3.0ch00",8404083,8406083,"+",9248,960,1684,425,90.596,79.848,-10.747341963313,2.25968899165232E-38,-0.2212310880653,4.48675295557097,0.70675244836083,1]
["Solyc00g010530","SL3.0ch00",8854847,8856847,"-",44429,3247,4545,687,93.189,86.869,-6.3201793682279,2.53411378124418e-50,-0.128590065141809,-2.83968867727814,1,1]
["Solyc00g011150","SL3.0ch00",9131088,9133088,"-",117527,15027,9053,2983,88.663,75.216,-13.447469477039,0,-0.182470806741523,4.09570081690159,0.752088708796356,1]
["Solyc00g011160","SL3.0ch00",9129189,9131189,"+",371451,11662,14753,1769,96.956,89.293,-7.6629256924012,0,-0.233163487928497,5.13575323511232,0.691237241242268,1]
["Solyc00g011170","SL3.0ch00",9132267,9134267,"-",1449,170,170,41,89.5,80.569,-8.9309707882403,0.000854687550540666,-1.51652855085365,-2.15704237410903,0.483483023151864,1]
["Solyc00g011175","SL3.0ch00",9159658,9161658,"+",1593,72,792,61,95.676,92.849,-2.8269066252654,0.00653301692473348,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g011880","SL3.0ch00",9382471,9384471,"+",1826,103,2051,173,94.66,92.221,-2.4392228052706,0.00365264182764053,-0.087980976700484,3.70833791061402,0.817352397013646,1]
["Solyc00g012430","SL3.0ch00",9551103,9553103,"+",66272,5376,4591,1136,92.497,80.164,-12.332515490238,1.80742651842312e-174,-0.0166134891248842,0.15022702524476,1,1]
["Solyc00g012440","SL3.0ch00",9563323,9565323,"+",4485,470,1063,177,90.515,85.726,-4.7888252335536,8.93263686286974e-06,-0.82017840187081,2.48019316520533,0.220357146711844,1]
["Solyc00g013186","SL3.0ch00",9906680,9908680,"+",2923,215,1974,196,93.149,90.968,-2.1807602952363,0.00753074868491086,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g014790","SL3.0ch00",10108906,10110906,"+",383,20965,200,13355,1.794,1.475,-0.31860876447885,0.0363329169186519,-5.11120125675659,-3.4160964314508,0.085802140665768,0.846612680643639]
["Solyc00g015737","SL3.0ch00",10361092,10363092,"-",5800,494,4809,500,92.151,90.582,-1.5692246494268,0.00535604165537032,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g029500","SL3.0ch00",11590266,11592266,"-",824,35,772,69,95.925,91.795,-4.1300131917904,0.000944233491192882,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g036320","SL3.0ch00",11989966,11991966,"+",1967,367,2053,483,84.276,80.954,-3.3216624903025,0.00494356777480514,0.763778382816021,-2.03780309921594,0.658543140166518,1]
["Solyc00g036520","SL3.0ch00",11998809,12000809,"+",913,12579,576,8987,6.767,6.023,-0.74375854860363,0.0342260089680657,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g056180","SL3.0ch00",12985694,12987694,"-",89,5,120,21,94.681,85.106,-9.5744680851064,0.0436215780716093,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g068970","SL3.0ch00",13555018,13557018,"-",6492,968,739,259,87.024,74.048,-12.976032493942,9.32548441462865e-23,-0.530865190191854,4.99671965056755,0.364852504189297,1]
["Solyc00g068980","SL3.0ch00",13553285,13555285,"+",103254,7201,7787,1877,93.481,80.577,-12.90320229823,0,0.125660466252744,2.42877767015063,0.868719884876826,1]
["Solyc00g068985","SL3.0ch00",13563019,13565019,"-",511,39,519,62,92.909,89.329,-3.5803473634799,0.0492544090442501,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc06g024210","SL3.0ch00",14392228,14394228,"-",1808,211,1232,208,89.549,85.556,-3.993726267129,0.00115771013987095,-0.257930908792531,5.08387758340171,0.665925527226083,1]
["Solyc00g094020","SL3.0ch00",14571243,14573243,"-",1061,123,1174,182,89.611,86.578,-3.0333153950411,0.0293727599282853,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g094520","SL3.0ch00",14585676,14587676,"-",553,26390,307,20347,2.052,1.486,-0.56608627674976,1.51061550644348e-05,5.41298518866233,-2.96074051384601,0.0446753442622108,0.649161791662578]
["Solyc00g094530","SL3.0ch00",14586705,14588705,"-",609,30409,342,23099,1.963,1.459,-0.50439397886161,2.98653501117451E-5,3.46363352561052,-2.86231287498452,0.334098577915024,1]
["Solyc00g096460","SL3.0ch00",14656312,14658312,"+",861,55,916,86,93.996,91.417,-2.5784675191103,0.0471817117051016,-0.546362441860912,0.790769791943977,0.450498765863932,1]
["Solyc00g110870","SL3.0ch00",15184121,15186121,"-",1730,320,546,144,84.39,79.13,-5.2598091198303,0.00381491260870245,-0.885615669188547,-0.0775620395219219,0.440716227689913,1]
["Solyc00g112600","SL3.0ch00",15244053,15246053,"-",2588,163,3056,244,94.075,92.606,-1.4688212550808,0.0334985031691668,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g112930","SL3.0ch00",15254586,15256586,"-",5081,287,4925,335,94.654,93.631,-1.0223235282451,0.0361602931988205,0.547140410633998,1.28322998838678,0.463559058171506,1]
["Solyc00g117653","SL3.0ch00",15444881,15446881,"-",459,19392,252,13115,2.312,1.885,-0.42698631474644,0.0143392644172949,-5.12548240610387e-15,-3.83524949456005,1,1]
["Solyc00g118680","SL3.0ch00",15446465,15448465,"-",986,15302,362,10520,6.054,3.327,-2.7269419697422,9.88040851245509e-24,0.22705638566929,-3.26670310808947,1,1]
["Solyc00g125980","SL3.0ch00",15682094,15684094,"+",550,14195,298,9617,3.73,3.006,-0.7245308417582,0.0043861317850749,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g125990","SL3.0ch00",15682094,15684094,"+",550,14195,298,9617,3.73,3.006,-0.7245308417582,0.0043861317850749,0.344161833840133,-0.333440414084136,0.716577160232107,1]
["Solyc00g127560","SL3.0ch00",15733087,15735087,"-",324,34,373,70,90.503,84.199,-6.3041476978953,0.0139731701209269,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g129880","SL3.0ch00",15807077,15809077,"+",633,73,687,138,89.66,83.273,-6.3873293844965,0.000865058317721099,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g129980","SL3.0ch00",15812774,15814774,"-",321,28,227,36,91.977,86.312,-5.6652902916535,0.0436538512383862,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g143770","SL3.0ch00",16255415,16257415,"-",462,39,312,44,92.216,87.64,-4.5751194240732,0.046160308538405,-0.606094531116703,1.54554544283966,0.339926005188665,1]
["Solyc00g170510","SL3.0ch00",17061068,17063068,"-",551,68,479,93,89.015,83.741,-5.273280838709,0.0142995555020051,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g180440","SL3.0ch00",17342216,17344216,"-",331,50,89,36,86.877,71.2,-15.676640419947,0.000309932055689275,-5.12548240610387e-15,-3.62871560262633,1,1]
["Solyc00g183050","SL3.0ch00",17411773,17413773,"+",144,380,116,518,27.481,18.297,-9.1843860620801,6.05330406922231E-4,0.908876863818684,-2.0440640677512,0.445540094712698,1]
["Solyc00g202560","SL3.0ch00",17945080,17947080,"+",1681,63,1820,104,96.388,94.595,-1.7930200843045,0.0177034379258693,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g203660","SL3.0ch00",17977333,17979333,"-",757,997,346,564,43.158,38.022,-5.1365168468931,0.0182641112521677,-2.05802587004261,-0.371376327409873,0.0743534467140289,0.800805203874552]
["Solyc00g209460","SL3.0ch00",18132723,18134723,"-",471,10,549,42,97.921,92.893,-5.0275969057695,0.000273589390721626,-0.0624404783452217,-0.319691729719315,0.940067051513895,1]
["Solyc12g062400","SL3.0ch00",18133196,18135196,"+",445,10,531,40,97.802,92.995,-4.8074517426531,0.000917040900113603,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g217960","SL3.0ch00",18350138,18352138,"+",442,235,288,204,65.288,58.537,-6.7514500846633,0.0294768741683212,-0.684990792985927,4.61513213725202,0.0753180994523577,0.805938842729733]
["Solyc00g231780","SL3.0ch00",18703657,18705657,"-",1531,69,1667,113,95.688,93.652,-2.0358146067416,0.0155175152336938,-1.94298062299907,-1.68550205616151,0.137261897804711,1]
["Solyc00g266110","SL3.0ch00",19532224,19534224,"-",847,94,404,77,90.011,83.992,-6.0189430008771,0.00294977524973955,-5.12548240610387e-15,-3.87428074584103,1,1]
["Solyc00g280110","SL3.0ch00",19855053,19857053,"-",1251,201,1280,407,86.157,75.874,-10.282691657645,2.81001296433855E-12,4.68536001268078,-2.64720589999565,0.00626016239319914,0.214440380611022]
["Solyc01g005040","SL3.0ch01",53477,55477,"+",947,515,771,508,64.774,60.281,-4.4928119073875,0.0240457125487454,1.65152881948402,-0.451463602311337,0.352596942715325,1]
["Solyc01g005060","SL3.0ch01",61589,63589,"-",114,409,95,506,21.797,15.807,-5.9903347830098,0.0179522052341855,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc01g005100","SL3.0ch01",97452,99452,"-",390,218,337,322,64.145,51.138,-13.006648829966,1.2603501412763e-05,0.162137164342433,4.06151028979403,0.646422361099866,1]
["Solyc01g005110","SL3.0ch01",97355,99355,"+",388,171,336,268,69.41,55.629,-13.780521034487,5.60114777372931e-06,0.514315221466714,4.14212051470547,0.146665649449689,1]
["Solyc01g005140","SL3.0ch01",129321,131321,"-",152,534,99,509,22.157,16.283,-5.8745396654903,0.015091322764326,-0.26117020828543,3.80588282285733,0.65551618541434,1]
["Solyc01g005170","SL3.0ch01",139245,141245,"+",561,236,461,313,70.389,59.561,-10.828235080518,2.60639488862054E-5,0.871055547892249,-2.12472140777813,0.525017597892747,1]
["Solyc01g005340","SL3.0ch01",245710,247710,"-",1053,699,1095,928,60.103,54.128,-5.9752063597397,0.000595770788078778,-0.0673752329200332,5.00912205955379,0.84220231098347,1]
["Solyc01g005360","SL3.0ch01",255331,257331,"+",471,572,398,678,45.158,36.989,-8.1693499235477,0.000405286270779666,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc01g005440","SL3.0ch01",307089,309089,"+",315,852,211,838,26.992,20.114,-6.8778932561553,0.000404173792637351,0.862361207351254,7.13767144874554,0.0157193140330024,0.370475336141105]
["Solyc01g005460","SL3.0ch01",321092,323092,"-",1168,525,1019,668,68.99,60.403,-8.5868762584946,9.15357919304044e-07,-0.758103372335844,-0.216058158595583,0.339465129129553,1]
["Solyc01g005550","SL3.0ch01",380342,382342,"+",2418,907,2730,1161,72.722,70.162,-2.5598924064208,0.026207891722689,0.270205867661655,5.3807341594024,0.378917292297636,1]
["Solyc01g005600","SL3.0ch01",426353,428353,"-",1724,807,1670,1071,68.115,60.927,-7.1887003203329,2.9705095656367e-07,0.00480988374639717,6.32428939603381,0.986633075547339,1]
["Solyc01g005610","SL3.0ch01",425654,427654,"+",921,896,900,1122,50.688,44.51,-6.1775614089811,0.000378552258854983,1.84896772667894,-3.34552886247129,1,1]
["Solyc01g005705","SL3.0ch01",493420,495420,"-",473,90,487,128,84.014,79.187,-4.8272177215555,0.0474531299350135,-5.12548240610387e-15,-3.79023561909612,1,1]
["Solyc01g005730","SL3.0ch01",488688,490688,"+",386,214,319,251,64.333,55.965,-8.3684210526316,0.00765192341969483,-0.0141475377797675,7.85887186447853,0.978145156984144,1]
["Solyc01g005775","SL3.0ch01",499851,501851,"+",302,46,214,60,86.782,78.102,-8.6794194143804,0.00925581880086633,-0.456820139554215,1.6012675888397,0.376978844466241,1]
["Solyc01g005800","SL3.0ch01",515973,517973,"-",1527,290,1254,329,84.04,79.217,-4.8229485615429,0.000782079861481084,0.61652780937381,2.02873640424701,0.485197280835462,1]
["Solyc01g005820","SL3.0ch01",533571,535571,"+",969,225,789,296,81.156,72.719,-8.4368848852558,8.4801537278504e-06,0.480900967606605,7.47842736243574,0.103571149181106,0.910506590280586]
["Solyc01g005865","SL3.0ch01",583904,585904,"-",190,29,112,41,86.758,73.203,-13.555376488495,0.00262045086007163,-2.98514276158658,-2.68955718425223,0.072680187043923,0.79368085691489]
["Solyc01g005870","SL3.0ch01",584027,586027,"-",190,13,119,25,93.596,82.639,-10.957170224412,0.00335624989883817,-1.75975539078867,0.559530100811343,0.0320941738095098,0.549518625571349]
["Solyc01g005880","SL3.0ch01",583370,585370,"+",264,52,155,58,83.544,72.77,-10.774350745825,0.00612076371619396,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc01g005900","SL3.0ch01",593877,595877,"-",253,279,187,340,47.556,35.484,-12.072520009702,2.4926352165293E-4,5.1732556621825,-3.25020664860293,0.0352123158911914,0.573641722152292]
["Solyc01g005920","SL3.0ch01",602186,604186,"-",1867,389,1747,430,82.757,80.248,-2.509044426418,0.0449387450628151,-1.35049909681123,1.4628289871067,0.0221989728265812,0.455761222113947]
["Solyc01g005940","SL3.0ch01",612494,614494,"+",1296,76,1294,111,94.461,92.1,-2.360997271303,0.0232962873907777,1.84877000687315,-3.56140207071382,1,1]
["Solyc01g005950","SL3.0ch01",624436,626436,"-",1145,727,630,502,61.165,55.654,-5.5108196671801,6.1375767100761E-3,-0.153070656324329,5.83825343982912,0.57356696135721,1]
["Solyc01g005970","SL3.0ch01",640038,642038,"+",1209,331,1107,471,78.506,70.152,-8.3544022517406,5.21024383149048e-07,0.0794623581714085,2.72944048577667,0.845671272976487,1]
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["Solyc12g095920","SL3.0ch12",66004479,66006479,"-",1166,562,1072,669,67.477,61.574,-5.9030436956198,0.000758726887961991,0.562586980220824,4.981318384087,0.0620708536469021,0.747777128070864]
["Solyc12g095930","SL3.0ch12",66002971,66004971,"+",1042,765,995,922,57.665,51.904,-5.7606208280035,0.00105260042135859,0.0620538995956071,5.38506570227818,0.841492113172062,1]
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["Solyc12g095960","SL3.0ch12",66046963,66048963,"-",1346,612,1069,635,68.744,62.735,-6.0088741505896,0.000389922518816421,0.125302817549936,8.24428412376545,0.638056036590191,1]
["Solyc12g096030","SL3.0ch12",66087306,66089306,"+",826,351,843,431,70.178,66.17,-4.0088749701567,0.0454110616785533,0.385335825435309,2.73773139029901,0.41416904564933,1]
["Solyc12g096100","SL3.0ch12",66137041,66139041,"+",232,331,79,274,41.208,22.38,-18.828211875877,2.38450354928664E-8,-1.86015800111187,2.30546296431206,0.0192995205020753,0.418366817768623]
["Solyc12g096160","SL3.0ch12",66173362,66175362,"-",619,291,576,440,68.022,56.693,-11.329064636151,1.78591887338329e-06,0.0912583866752005,4.78330423143676,0.735132853579662,1]
["Solyc12g096210","SL3.0ch12",66206590,66208590,"+",1187,549,1308,741,68.376,63.836,-4.5395584673202,0.00657113694876324,0.354194379253706,-0.535694860529887,0.736232982651471,1]
["Solyc12g096300","SL3.0ch12",66264178,66266178,"-",741,196,813,304,79.082,72.784,-6.2979336517524,0.00214003126383217,0.314109910919144,8.2716479712872,0.273834205762076,1]
["Solyc12g096310","SL3.0ch12",66266561,66268561,"+",1908,962,2000,1137,66.481,63.755,-2.72565612855,0.0391800484259152,3.62798643505313,7.34904033782779,4.19924930197969e-10,2.3285572235962e-07]
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["Solyc12g096520","SL3.0ch12",66394815,66396815,"-",638,107,476,110,85.638,81.229,-4.4089149506379,0.0482506158774231,0.419888327297959,6.77580013659324,0.131376863885124,0.999829809549528]
["Solyc12g096590","SL3.0ch12",66427297,66429297,"-",295,867,143,860,25.387,14.257,-11.130035024016,8.48350321694646e-10,0.601834893745295,3.99008292359414,0.13823676457584,1]
["Solyc12g096610","SL3.0ch12",66427498,66429498,"+",292,609,137,565,32.408,19.516,-12.892765556473,3.92503457644877e-08,0.291666642019489,2.29932690915984,0.629690624029453,1]
["Solyc12g096630","SL3.0ch12",66443332,66445332,"+",1563,640,1551,763,70.949,67.027,-3.92191287829,0.00849519401946095,-1.07647228744508,-0.619999313229376,0.268562990917231,1]
["Solyc12g096690","SL3.0ch12",66495101,66497101,"-",62,177,37,176,25.941,17.371,-8.5705305753629,0.0419517650285137,0.000643515473185187,5.89978858232545,0.999172564798261,1]
["Solyc12g096700","SL3.0ch12",66497811,66499811,"-",1319,251,1196,312,84.013,79.31,-4.702394025917,0.00179872382310104,0.0853935449823983,8.36330211148345,0.800567670033586,1]
["Solyc12g096710","SL3.0ch12",66497420,66499420,"+",1316,230,1190,423,85.123,73.776,-11.347324335184,3.90395209404955e-14,0.150662597515771,4.8250896844166,0.839507633177051,1]
["Solyc12g096760","SL3.0ch12",66517796,66519796,"+",995,274,1140,389,78.408,74.559,-3.8496604392824,0.0268254677062264,0.0264272895355408,6.82560278853171,0.925972264706314,1]
["Solyc12g096790","SL3.0ch12",66549479,66551479,"-",463,277,368,351,62.568,51.182,-11.385370071045,4.15603466418439E-5,3.3142759419375,-3.1047459101257,0.335170840392195,1]
["Solyc12g096800","SL3.0ch12",66551524,66553524,"-",381,454,330,531,45.629,38.328,-7.3012163825659,0.00525580480643802,3.46299205667292,-2.12870915060025,0.34238221359317,1]
["Solyc12g098120","SL3.0ch12",66739898,66741898,"+",1040,521,860,583,66.624,59.598,-7.025899402581,0.000211424880254507,1.82284812329732,-3.87342270417847,0.999999999999999,1]
["Solyc12g098200","SL3.0ch12",66798142,66800142,"-",612,92,524,202,86.932,72.176,-14.755509641873,4.23598123964906E-11,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g098310","SL3.0ch12",66847837,66849837,"+",1140,227,1152,314,83.394,78.581,-4.813120814043,0.00251470412921197,0.671368663975576,3.93054776337667,0.165166714622542,1]
["Solyc12g098350","SL3.0ch12",66867715,66869715,"-",728,294,602,345,71.233,63.569,-7.6637109256339,0.000776729588450606,0.108318735808318,4.45060605946358,0.772548339590071,1]
["Solyc12g098360","SL3.0ch12",66878794,66880794,"-",545,619,498,709,46.821,41.259,-5.5619852122641,0.0122846503640226,0.175143349012443,2.93517062227571,0.703446809182749,1]
["Solyc12g098370","SL3.0ch12",66878206,66880206,"+",542,621,488,743,46.604,39.643,-6.961044331273,1.4444303636663E-3,0.493625847195767,4.20877225497068,0.14116282342686,1]
["Solyc12g098430","SL3.0ch12",66911781,66913781,"+",245,7,199,36,97.222,84.681,-12.541371158392,3.22068100805433E-6,0.398624902166843,0.00822727493535587,0.528945149832315,1]
["Solyc12g098570","SL3.0ch12",67020780,67022780,"-",2280,750,2418,982,75.248,71.118,-4.1298776936517,0.000541956453039479,0.15340460844691,6.01358597433491,0.615148317778054,1]
["Solyc12g098840","SL3.0ch12",67204767,67206767,"+",1289,709,1368,975,64.515,58.387,-6.1278307757181,1.20074809441346E-4,-1.34870464192504,-3.06869563701465,0.644032093967901,1]
["Solyc12g098920","SL3.0ch12",67263883,67265883,"-",1054,282,1134,374,78.892,75.199,-3.6932765768198,0.0298144741898327,-0.132361918747229,4.23972610830657,0.729551022394921,1]
["Solyc12g098930","SL3.0ch12",67266836,67268836,"-",217,23,186,42,90.417,81.579,-8.8377192982456,0.0123819391444199,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g098980","SL3.0ch12",67293705,67295705,"-",281,706,231,723,28.47,24.214,-4.2562749708474,0.0465611736332939,0.263415770486617,6.05375003864699,0.299773281221473,1]
["Solyc12g098990","SL3.0ch12",67292273,67294273,"+",144,490,92,454,22.713,16.85,-5.8631169041264,0.0205298852150613,-0.270057434262109,3.51029595341482,0.446501175289751,1]
["Solyc12g099050","SL3.0ch12",67329984,67331984,"-",50,11,1,61,81.967,1.613,-80.354309888948,5.48368324798175e-21,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g099110","SL3.0ch12",67360350,67362350,"+",758,124,645,191,85.941,77.153,-8.7879330360533,1.1237773041224E-5,-0.12280315108815,5.24130584504743,0.710411679914105,1]
["Solyc12g099130","SL3.0ch12",67374354,67376354,"+",443,1103,362,1451,28.655,19.967,-8.6876868155744,3.25385471523106e-08,4.06100552923535,-2.93925070570666,0.0957483874314258,0.886859763795509]
["Solyc12g099200","SL3.0ch12",67413385,67415385,"+",789,430,520,471,64.725,52.472,-12.252934325252,4.40658720153196e-08,-0.288416395860725,7.80561976435256,0.412748831667276,1]
["Solyc12g099230","SL3.0ch12",67416972,67418972,"+",504,503,279,517,50.05,35.05,-14.999401176688,1.49704126769161e-09,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g099440","SL3.0ch12",67569779,67571779,"+",1264,592,1082,681,68.103,61.373,-6.7307880376318,8.38450150626364e-05,0.257087362063916,8.34987954611291,0.3773860331822,1]
["Solyc12g099490","SL3.0ch12",67600934,67602934,"+",1795,492,1743,622,78.487,73.7,-4.7873124221748,0.000384030145225678,0.41894066509801,6.299373887455,0.153857555533887,1]
["Solyc12g099500","SL3.0ch12",67608122,67610122,"-",659,559,575,603,54.105,48.812,-5.2935453204758,0.0164153383737594,0.410258324904084,7.35397338436693,0.294692063095923,1]
["Solyc12g099620","SL3.0ch12",67680945,67682945,"-",1319,550,1237,694,70.572,64.06,-6.5124261610916,7.15727027910734e-05,-0.580744028130283,0.694489556377551,0.471210254757372,1]
["Solyc12g099630","SL3.0ch12",67679417,67681417,"+",893,346,823,459,72.074,64.197,-7.8776855674711,7.86318792492722e-05,0.141724593725514,1.87374492177816,0.7807366922323,1]
["Solyc12g099700","SL3.0ch12",67712747,67714747,"+",629,393,440,348,61.546,55.838,-5.7084248065404,0.0242171954769777,0.102956277885184,5.38058508292708,0.712227306304897,1]
["Solyc12g099710","SL3.0ch12",67720254,67722254,"+",167,67,42,40,71.368,51.22,-20.148009172399,0.00252368950246664,0.423118851378801,5.2151773837404,0.177246062450354,1]
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["Solyc12g099900","SL3.0ch12",67825277,67827277,"+",518,339,333,528,60.443,38.676,-21.767449046386,4.38262787297667e-18,0.738912728584122,4.02006486106073,0.117955204775644,0.9565293775279]
["Solyc12g099950","SL3.0ch12",67877817,67879817,"-",112,61,63,101,64.74,38.415,-26.325250246722,6.50064654702992e-06,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g099960","SL3.0ch12",67878660,67880660,"+",195,35,153,66,84.783,69.863,-14.919594997022,4.86569712351628E-4,-7.50668551689443E-3,3.12937542985832,0.990443368915166,1]
["Solyc12g099995","SL3.0ch12",67891579,67893579,"+",26,271,2,174,8.754,1.136,-7.6178451178451,0.000994040454987587,-0.0243741281871876,2.5729533890001,0.963549002535771,1]
["Solyc12g100020","SL3.0ch12",67905056,67907056,"+",888,60,785,100,93.671,88.701,-4.970321104198,0.00049582723085012,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g100035","SL3.0ch12",67914214,67916214,"-",1443,264,1520,362,84.534,80.765,-3.769127185864,0.00608111645348963,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc12g100040","SL3.0ch12",67922372,67924372,"-",714,219,590,259,76.527,69.494,-7.033809399369,0.00203339373858432,0.0144078598789472,4.18102588021319,0.963326903007547,1]
["Solyc12g100050","SL3.0ch12",67925603,67927603,"-",10,107,0,60,8.547,0,-8.5470085470086,0.0254501237800414,0.667752184582242,4.30586895010759,0.0455359525828924,0.652536038455487]
["Solyc12g100130","SL3.0ch12",67953810,67955810,"+",137,147,55,115,48.239,32.353,-15.886495443248,0.00256547206532309,-0.15793444384325,4.45394913947937,0.605947403359697,1]
["Solyc12g100170","SL3.0ch12",67973773,67975773,"+",233,158,144,155,59.591,48.161,-11.430257721818,0.00639953325301647,-5.12548240610387e-15,-0.840707422538963,1,1]
["Solyc12g100310","SL3.0ch12",68065572,68067572,"-",954,199,936,276,82.741,77.228,-5.5129537238199,1.92256667986976E-3,-0.0548640505556723,5.72997225902678,0.858519154181172,1]
["Solyc12g100320","SL3.0ch12",68069678,68071678,"-",135,441,93,419,23.438,18.164,-5.2734375,0.048698003679252,0.370903605030653,4.36975612256774,0.224186320064381,1]
["Solyc12g100330","SL3.0ch12",68068710,68070710,"+",143,359,94,361,28.486,20.659,-7.8267151175518,0.00986881421691388,-0.209758404034518,5.77562078176169,0.473559499765051,1]
["Solyc12g100350","SL3.0ch12",68089938,68091938,"+",1498,77,1595,116,95.111,93.22,-1.8907721280603,0.0311225038078319,0.370363823361656,-0.782669363899267,0.740798339222548,1]

{"sheet":"PHYB1B2_vs_WT_IG_hypermethylate","index":5,"n_rows":10365,"n_cols":17,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYB1B2","unmet_PHYB1B2","X.met_WT","X.met_PHYB1B2","X.diff_PHYB1B2.ctrl","FDR_diff_PHYB1B2.WT","logFC_PHYB1B2","logCPM_PHYB1B2","PValue_PHYB1B2","padj_PHYB1B2"]
["Solyc00g005000","SL3.0ch00",14479,16479,"+",339,623,414,505,35.239,45.049,9.809881028597,5.24373212309529e-05,4.71479458307379,-2.90243574957455,0.0471469025131507,0.662178706002876]
["Solyc00g005480","SL3.0ch00",2610590,2612590,"+",235,39,233,17,85.766,93.2,7.4335766423358,0.0119088251151544,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g006480","SL3.0ch00",4232311,4234311,"+",258,85,277,21,75.219,92.953,17.7343612421,4.71734420684054e-09,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g006805","SL3.0ch00",5780749,5782749,"-",868,136,686,64,86.454,91.467,5.0124833997344,2.37551433062401E-3,0.764814205640683,-2.36691828856068,0.741986104167052,1]
["Solyc00g006840","SL3.0ch00",6186900,6188900,"+",235,323,415,318,42.115,56.617,14.501948588557,1.4994966349427e-06,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g006867","SL3.0ch00",6390079,6392079,"+",122,566,320,446,17.733,41.775,24.042898779525,2.0546156582218e-22,2.22969991726051,-0.558251759538668,0.0146960067334165,0.354946628498543]
["Solyc00g007550","SL3.0ch00",6650039,6652039,"-",862,544,1087,415,61.309,72.37,11.061496004379,2.03492967053468e-09,-1.07853177534438,-3.43052628147651,0.678036194447422,1]
["Solyc00g008055","SL3.0ch00",7069205,7071205,"-",189,21,98,2,90,98,8,0.0168376989863778,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g008800","SL3.0ch00",7659775,7661775,"-",700,85,1115,88,89.172,92.685,3.5129797586713,0.0124068099798906,-5.12548240610387e-15,-3.91085760741443,1,1]
["Solyc00g009020","SL3.0ch00",7793998,7795998,"+",1375,205,1530,164,87.025,90.319,3.2934556812578,0.00639135486588913,0.278158155018222,7.62400916820391,0.278495647053144,1]
["Solyc00g009030","SL3.0ch00",7802222,7804222,"-",641,501,711,461,56.13,60.666,4.5359318123405,0.0392400371386851,-0.523202844259961,-2.21618464730913,0.782280201868125,1]
["Solyc00g009050","SL3.0ch00",7822149,7824149,"-",1830,247,2049,116,88.108,94.642,6.5341844750767,2.50272164964712E-13,1.11039515972238,-1.83143939226503,0.317251340345003,1]
["Solyc00g009060","SL3.0ch00",7824190,7826190,"+",1027,636,1054,508,61.756,67.478,5.7217299313291,0.0016426275208358,0.303617914670949,4.70453708216914,0.297361366948845,1]
["Solyc00g009090","SL3.0ch00",7841622,7843622,"-",1140,701,1460,577,61.923,71.674,9.7511624303988,1.01417775163381e-09,1.11709135890437,-3.59635664645328,0.820210367778343,1]
["Solyc00g009110","SL3.0ch00",7871111,7873111,"+",101,1238,258,1247,7.543,17.143,9.5999146484583,1.02703797162385E-13,-0.205033819553407,3.27195840491963,0.746454350338644,1]
["Solyc00g009141","SL3.0ch00",7897016,7899016,"-",1311,287,1655,241,82.04,87.289,5.2489794732868,6.59641307365772e-05,-0.0485147933168123,4.45932488007655,0.871635235944339,1]
["Solyc00g009540","SL3.0ch00",8210678,8212678,"-",696,94,582,51,88.101,91.943,3.8418621393005,0.0261464746785234,-5.12548240610387e-15,-3.91085760741443,1,1]
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["Solyc12g098520","SL3.0ch12",66984399,66986399,"-",622,310,674,143,66.738,82.497,15.758742599587,5.88230625847135E-13,1.57292151691913,6.19299003856236,0.000512218669681268,0.0377217192519397]
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["Solyc12g098720","SL3.0ch12",67113672,67115672,"+",335,371,329,276,47.45,54.38,6.9297403600777,0.0200675135591394,0.331787217244922,4.91163296515738,0.348245788246082,1]
["Solyc12g098740","SL3.0ch12",67124328,67126328,"+",372,677,676,967,35.462,41.144,5.6819032356701,0.0066812467548941,0.407494895449184,7.91005035557334,0.157628122488508,1]
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["Solyc12g098820","SL3.0ch12",67171113,67173113,"+",1938,964,2461,1056,66.782,69.974,3.1928800292054,0.0111898245988335,0.125112559423814,6.12133235883969,0.636887467887174,1]
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["Solyc12g098960","SL3.0ch12",67281482,67283482,"+",1468,745,1872,766,66.335,70.963,4.6275591848704,1.32011159367188E-3,-0.0457890047655243,3.07544957573628,0.940326263153022,1]
["Solyc12g099030","SL3.0ch12",67315150,67317150,"+",1155,206,1269,171,84.864,88.125,3.2609294636297,0.0199445011769539,0.466693132935716,8.13302408065141,0.120459295831944,0.96407686379109]
["Solyc12g099080","SL3.0ch12",67340937,67342937,"-",525,586,506,457,47.255,52.544,5.2894074454174,0.0261690307728472,0.731901903634488,7.57554869187543,0.0156887001660535,0.370475336141105]
["Solyc12g099090","SL3.0ch12",67340163,67342163,"+",525,936,491,482,35.934,50.462,14.528195572026,1.32411832016779e-11,0.0114756366505144,5.55210792992616,0.968883695383,1]
["Solyc12g099100","SL3.0ch12",67349092,67351092,"+",81,275,145,311,22.753,31.798,9.045436625271,0.00830281475956449,0.164786082451782,6.29903157973647,0.606071954993881,1]
["Solyc12g099140","SL3.0ch12",67381709,67383709,"+",488,411,717,421,54.283,63.005,8.7227362564537,0.000233727854266364,0.158247342788808,1.99885098853957,0.878247588202017,1]
["Solyc12g099150","SL3.0ch12",67388430,67390430,"-",1039,908,1154,678,53.364,62.991,9.6271164012264,1.62083227420686E-8,-1.82366189940705,-3.87399169536477,0.999999999999999,1]
["Solyc12g099160","SL3.0ch12",67389883,67391883,"+",1408,228,1455,170,86.064,89.538,3.47489185631,0.00532313923578844,-0.812666116225175,5.24012273835885,0.0520753059228018,0.694022338575655]
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["Solyc12g099330","SL3.0ch12",67503363,67505363,"-",772,272,716,197,73.946,78.423,4.4764218839832,0.0323437307050728,0.388875882438261,6.74897606902199,0.263448086764015,1]
["Solyc12g099370","SL3.0ch12",67523898,67525898,"+",1062,902,1566,873,54.073,64.207,10.13332231082,9.82370666199602e-11,-0.366896630735756,4.27854115802709,0.325289093668284,1]
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["Solyc12g099470","SL3.0ch12",67596659,67598659,"-",1553,911,1376,681,63.028,66.894,3.865936870616,0.0123191685577847,0.439458527466112,6.04285080568767,0.101896515927061,0.903865857426428]
["Solyc12g099540","SL3.0ch12",67641984,67643984,"-",349,223,407,129,61.014,75.933,14.91884980691,5.85121729252465e-07,-0.251638892679119,0.246625329534406,0.806017098260535,1]
["Solyc12g099560","SL3.0ch12",67653513,67655513,"-",694,492,830,481,58.516,63.31,4.7944298020511,0.0234763984104243,-0.23587165323393,3.78256418239679,0.597167728191227,1]
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["Solyc12g100290","SL3.0ch12",68029572,68031572,"+",20,77,46,71,20.619,39.316,18.697682615208,0.00834625079425045,-0.243752897222038,0.955223195913,0.648599831184512,1]

{"sheet":"PHYB1B2_vs_WT_BK_hypomethylated","index":6,"n_rows":2714,"n_cols":17,"rows_kept":2714}
["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYB1B2","unmet_PHYB1B2","X.met_WT","X.met_PHYB1B2","X.diff_PHYB1B2.ctrl","FDR_diff_PHYB1B2.WT","logFC_PHYB1B2","logCPM_PHYB1B2","PValue_PHYB1B2","padj_PHYB1B2"]
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["Solyc00g006870","SL3.0ch00",6404880,6406880,"+",753,358,818,472,67.777,63.411,-4.3659249645895,0.0227429060898613,0,-3.91085760741443,1,1]
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["Solyc00g011150","SL3.0ch00",9131088,9133088,"-",84500,10507,7253,2588,88.941,73.702,-15.238955320207,0,-0.258431063436835,4.09570081690159,0.652360941584166,1]
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["Solyc00g011673","SL3.0ch00",9365433,9367433,"+",887,92,572,81,90.603,87.596,-3.0069436731859,0.0475370791619565,0,-3.91085760741443,1,1]
["Solyc00g011895","SL3.0ch00",9476079,9478079,"+",2204,181,1776,185,92.411,90.566,-1.8448637316562,0.0281148836104248,0,-3.91085760741443,1,1]
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["Solyc00g012440","SL3.0ch00",9563323,9565323,"+",2125,250,885,130,89.474,87.192,-2.2815659839253,0.0462778375311401,-0.401919941857838,2.48019316520533,0.542037919568885,1]
["Solyc00g013120","SL3.0ch00",9726388,9728388,"-",512,335,551,1151,60.449,32.374,-28.074964240972,7.48120315811212e-40,0,-3.04179885224491,1,1]
["Solyc00g013130","SL3.0ch00",9727452,9729452,"-",976,1410,854,3865,40.905,18.097,-22.808226344003,7.06016759696174e-90,3.57648846483742,-3.50606629457688,0.362765001155474,0.981125032992742]
["Solyc00g013133","SL3.0ch00",9727784,9729784,"-",1003,1457,952,4150,40.772,18.659,-22.113008448783,3.96199104649613e-88,4.08680292371252,-3.38388112100868,0.228296090167337,0.781406177330653]
["Solyc00g013140","SL3.0ch00",9737602,9739602,"-",1705,4572,2061,11993,27.163,14.665,-12.497793224745,1.55296574458979E-92,-0.0387925789535757,-1.03249406421298,0.973819435513898,1]
["Solyc00g013150","SL3.0ch00",9736648,9738648,"+",1175,4883,1361,12434,19.396,9.866,-9.5299467716388,6.38317590620367e-70,-0.696345131618904,-2.82133188471744,0.775779565655172,1]
["Solyc00g013155","SL3.0ch00",9739388,9741388,"-",504,1448,563,3861,25.82,12.726,-13.093632348146,1.90577184484711e-34,4.1679479085352,-3.15174374011737,0.224849234112231,0.775769982224973]
["Solyc00g013160","SL3.0ch00",9741809,9743809,"-",916,3607,1012,8435,20.252,10.712,-9.5396496333467,2.40963242976125e-48,0.00146087661955897,-1.09183566663966,1,1]
["Solyc00g013170","SL3.0ch00",9740381,9742381,"+",1077,3047,1169,8105,26.115,12.605,-13.510289291611,2.76512999513474e-76,1.43203745344161,-1.39935424343059,0.203388073148631,0.735941790630273]
["Solyc00g013180","SL3.0ch00",9744467,9746467,"-",1029,2620,967,7207,28.2,11.83,-16.369313418352,8.30103271672505e-98,4.10959407962949,-2.8354164280273,0.0968354756118546,0.48219564133159]
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["Solyc12g043120","SL3.0ch12",59719681,59721681,"-",905,61,968,105,93.685,90.214,-3.4709479237215,0.00487797921989068,0.475568996997639,7.43510375529958,0.135285649783941,0.581877960734969]
["Solyc12g044340","SL3.0ch12",60216535,60218535,"-",776,91,869,298,89.504,74.464,-15.03959817709,3.46508830961604e-17,0.389734121129821,2.5196109298257,0.366125590257439,0.985741822531281]
["Solyc12g044400","SL3.0ch12",60264747,60266747,"-",2365,276,2417,358,89.549,87.099,-2.450314001999,0.00562902489461399,-0.520665454633219,5.6335062322836,0.0670438562439527,0.386552498556821]
["Solyc12g044440","SL3.0ch12",60353752,60355752,"+",1967,3982,2208,5671,33.064,28.024,-5.0405196721099,7.36787902745628e-10,-0.408777492604236,3.22023290258742,0.288709808049473,0.881106861289553]
["Solyc12g044520","SL3.0ch12",60455378,60457378,"-",189,14,111,22,93.103,83.459,-9.6448016593207,0.0069166771578033,0,-3.2082695638621,1,1]
["Solyc12g044750","SL3.0ch12",60943571,60945571,"-",102,89,140,183,53.403,43.344,-10.059488110482,0.0252891894582157,1.85458320500038,-3.86961714799266,1,1]
["Solyc12g044780","SL3.0ch12",61019780,61021780,"+",558,29,483,45,95.06,91.477,-3.5823524856745,0.0196894818223202,-4.18458067764372,-2.99028897938021,0.149151232696275,0.61760144606163]
["Solyc12g044800","SL3.0ch12",61083045,61085045,"-",1036,326,1073,425,76.065,71.629,-4.4357724151046,0.0076080384628148,0.176986593398707,5.74323205196772,0.487615524034487,1]
["Solyc12g049090","SL3.0ch12",61439821,61441821,"+",689,141,699,198,83.012,77.926,-5.0856267880888,0.00917979457055142,0,-3.91085760741443,1,1]
["Solyc12g049110","SL3.0ch12",61481998,61483998,"+",501,106,557,158,82.537,77.902,-4.6349696432069,0.0327701040909327,0,-3.91085760741443,1,1]
["Solyc12g049140","SL3.0ch12",61516071,61518071,"-",506,659,465,756,43.433,38.084,-5.3499383113117,0.00876766471888127,0,-3.91085760741443,1,1]
["Solyc12g049250","SL3.0ch12",61663066,61665066,"+",714,226,630,379,75.957,62.438,-13.519389325854,5.27779417605485e-10,5.87508663803526,-2.91208398008995,0.0336625027325057,0.245859075286055]
["Solyc12g049280","SL3.0ch12",61703320,61705320,"+",64,45,96,116,58.716,45.283,-13.432577462351,0.0227702967910334,-0.244314218727166,1.91990504590284,0.608085100425622,1]
["Solyc12g049340","SL3.0ch12",61767778,61769778,"-",1268,230,1103,254,84.646,81.282,-3.3639546907545,0.0175254800053725,3.58435752065075,-3.61877930015589,0.292455025744498,0.886260388107193]
["Solyc12g049440","SL3.0ch12",61985444,61987444,"+",990,107,1072,185,90.246,85.282,-4.9637073409871,0.000384713388816091,0,-3.91085760741443,1,1]
["Solyc12g049460","SL3.0ch12",61985767,61987767,"+",1744,142,1826,222,92.471,89.16,-3.3106815018558,0.000473330835407866,2.56619979790133,-3.27443797212844,0.579392254289374,1]
["Solyc12g049530","SL3.0ch12",62114520,62116520,"-",31,1,31,11,96.875,73.81,-23.065476190476,0.00959621781328394,0.0438711679320733,2.80561116436739,0.92439731130365,1]
["Solyc12g049617","SL3.0ch12",62336792,62338792,"+",978,130,868,162,88.267,84.272,-3.9953033542463,0.00825236775765273,-2.53903970384616,-1.49800398906016,0.14252635040489,0.601257794124111]
["Solyc12g055970","SL3.0ch12",62907004,62909004,"-",1165,851,1223,1013,57.788,54.696,-3.0918129028594,0.0370827295945396,5.80971998819455,0.578568635415258,0.00990552715224272,0.104791746578355]
["Solyc12g056020","SL3.0ch12",62939957,62941957,"+",21,0,59,11,100,84.286,-15.714285714286,0.0496347379845608,0,-3.91085760741443,1,1]
["Solyc12g056490","SL3.0ch12",63384806,63386806,"-",640,119,765,210,84.321,78.462,-5.859937164285,0.00239536744779363,0.68254025335584,-0.864873910004565,0.516430704720405,1]
["Solyc12g087810","SL3.0ch12",64300984,64302984,"-",430,560,339,567,43.434,37.417,-6.0171248912971,0.00886407256430491,-0.490985699813478,5.13973837806209,0.095683060578163,0.479117650125999]
["Solyc12g088110","SL3.0ch12",64567455,64569455,"-",969,425,642,720,69.512,47.137,-22.375631245299,2.17477347240703e-31,-2.0589602094265,-3.82761176906435,1,1]
["Solyc12g088120","SL3.0ch12",64565784,64567784,"+",892,89,840,303,90.928,73.491,-17.436811224285,1.10617191993695E-24,0,-3.91085760741443,1,1]
["Solyc12g088160","SL3.0ch12",64596254,64598254,"+",776,662,844,992,53.964,45.969,-7.9943397541368,1.25708139576998E-5,-2.54520120870343,-3.79989856023492,0.624069771616019,1]
["Solyc12g088170","SL3.0ch12",64601247,64603247,"+",121,57,182,137,67.978,57.053,-10.924236553838,0.0158528385128271,0,-3.91085760741443,1,1]
["Solyc12g088250","SL3.0ch12",64689665,64691665,"+",1193,415,995,426,74.192,70.021,-4.1704303955241,0.011489505435656,5.75220682278221,1.08164420914617,0.00239088120020017,0.0391203288054711]
["Solyc12g088260","SL3.0ch12",64694726,64696726,"+",396,49,235,106,88.989,68.915,-20.073808033214,1.56208038098611E-11,0,-3.91085760741443,1,1]
["Solyc12g088410","SL3.0ch12",64784704,64786704,"-",1166,635,1168,1230,64.742,48.707,-16.034554058791,6.56410993766658e-24,1.62069000210431,0.942667951541618,0.0127603836693422,0.124376242549712]
["Solyc12g088450","SL3.0ch12",64796776,64798776,"+",303,177,218,230,63.125,48.661,-14.464285714286,1.74735105523685E-5,-0.242700338745687,3.30785564815779,0.505771016834326,1]
["Solyc12g088490","SL3.0ch12",64817977,64819977,"-",24,111,12,141,17.778,7.843,-9.9346405228758,0.0121787780819991,0,-3.91085760741443,1,1]
["Solyc12g088500","SL3.0ch12",64820946,64822946,"-",2200,231,2117,366,90.498,85.26,-5.2379711449622,6.20207262050905e-08,0.818269353184725,-1.12495752754471,0.540691371236864,1]
["Solyc12g088540","SL3.0ch12",64864990,64866990,"-",397,205,466,427,65.947,52.184,-13.763193237919,3.2451892472501e-07,0,-3.91085760741443,1,1]
["Solyc12g088580","SL3.0ch12",64865488,64867488,"-",279,191,437,419,59.362,51.051,-8.3103002585007,0.00439475504389913,0,-3.91085760741443,1,1]
["Solyc12g088690","SL3.0ch12",64948070,64950070,"-",174,20,244,48,89.691,83.562,-6.1290778138681,0.0496051451599872,0,-0.625676998131335,1,1]
["Solyc12g088830","SL3.0ch12",65034473,65036473,"-",1223,622,1272,800,66.287,61.39,-4.8973014826673,0.00189655828615893,2.12840685751521,1.09136822578127,0.00506396394144069,0.0658168104133178]
["Solyc12g094740","SL3.0ch12",65853859,65855859,"-",1045,40,862,55,96.313,94.002,-2.3111830302178,0.018349071623862,0,-3.91085760741443,1,1]
["Solyc12g095740","SL3.0ch12",65854296,65856296,"+",950,43,781,54,95.67,93.533,-2.1367536829664,0.038756680486671,-3.86060131509816,-3.50034013607896,0.312027872005052,0.913186565726267]
["Solyc12g095810","SL3.0ch12",65908427,65910427,"+",2239,849,2418,1038,72.506,69.965,-2.54119890616,0.022493375009078,0.675879638655302,0.957113734062791,0.307627699776431,0.907108620412481]
["Solyc12g095970","SL3.0ch12",66051031,66053031,"-",1296,891,1519,1462,59.259,50.956,-8.3032042441637,1.1697529635819e-08,0,-3.79436498907682,1,1]
["Solyc12g096100","SL3.0ch12",66137041,66139041,"+",201,213,152,229,48.551,39.895,-8.6557115143216,0.0144645693581405,0.560326395509398,2.30546296431206,0.541362182545474,1]
["Solyc12g096140","SL3.0ch12",66163437,66165437,"-",1177,199,1430,298,85.538,82.755,-2.7831610680448,0.0328448827286499,0.13115931697667,4.45420081886258,0.664567903107213,1]
["Solyc12g096430","SL3.0ch12",66344617,66346617,"-",1321,183,1578,286,87.832,84.657,-3.1757944479956,0.00928454054728717,1.46124280921629,-0.111257441783025,0.0341430964352619,0.247980770290043]
["Solyc12g096590","SL3.0ch12",66427297,66429297,"-",203,694,155,700,22.631,18.129,-4.5023372254493,0.019100640335455,0.223844405354864,3.99008292359414,0.584130393208726,1]
["Solyc12g096600","SL3.0ch12",66425399,66427399,"+",31,129,5,175,19.375,2.778,-16.597222222222,1.28349300048256e-06,0.70014999196737,0.304706826750547,0.326103677811547,0.935218189094062]
["Solyc12g096690","SL3.0ch12",66495101,66497101,"-",13,78,3,104,14.286,2.804,-11.481975967957,0.00406181512535355,-0.399990517246991,5.89978858232545,0.137122246824564,0.586700254972608]
["Solyc12g096790","SL3.0ch12",66549479,66551479,"-",334,159,351,217,67.748,61.796,-5.9527040539382,0.0384492265481594,0,-3.1047459101257,1,1]
["Solyc12g097000","SL3.0ch12",66666499,66668499,"-",314,96,442,251,76.585,63.781,-12.804702072995,1.7151846390659e-05,1.67143299667056,3.28630201093601,0.0121503058653002,0.12038361781539]
["Solyc12g097050","SL3.0ch12",66681844,66683844,"+",285,38,350,112,88.235,75.758,-12.477718360071,1.66815822357171e-05,-0.974315317221953,-3.19895789505985,0.642720510024782,1]
["Solyc12g098200","SL3.0ch12",66798142,66800142,"-",468,109,519,211,81.109,71.096,-10.013295030982,5.51035734814417e-05,0,-3.91085760741443,1,1]
["Solyc12g098300","SL3.0ch12",66844208,66846208,"+",662,172,822,271,79.376,75.206,-4.1706433572264,0.0287752793241841,0,-3.91085760741443,1,1]
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["Solyc12g098590","SL3.0ch12",67025243,67027243,"+",1418,451,1698,646,75.869,72.44,-3.4291758656141,0.011849739532223,1.87005474111626,-3.68964036006616,0.999999999999999,1]
["Solyc12g099050","SL3.0ch12",67329984,67331984,"-",7,3,0,11,70,0,-70,1.30240412315436E-3,0,-3.91085760741443,1,1]
["Solyc12g099070","SL3.0ch12",67331543,67333543,"+",637,178,557,199,78.16,73.677,-4.4822605252053,0.033000657177462,0,-3.5715005195899,1,1]
["Solyc12g099710","SL3.0ch12",67720254,67722254,"+",179,26,136,42,87.317,76.404,-10.912578788709,0.00733522338486207,-0.184830748814143,5.2151773837404,0.555327335432958,1]
["Solyc12g099720","SL3.0ch12",67724258,67726258,"+",201,123,191,222,62.037,46.247,-15.79006367142,3.87301710697403E-5,0,-3.79760289006955,1,1]
["Solyc12g099870","SL3.0ch12",67816286,67818286,"-",70,19,59,32,78.652,64.835,-13.816520558094,0.0394369304892837,0,-2.7293305007382,1,1]
["Solyc12g099960","SL3.0ch12",67878660,67880660,"+",143,22,131,52,86.667,71.585,-15.081967213115,0.000825222109193509,0.70415401383263,3.12937542985832,0.201116207317371,0.731197855593387]
["Solyc12g099980","SL3.0ch12",67888402,67890402,"-",17,167,0,144,9.239,0,-9.2391304347826,8.30082996415979e-05,5.67953258133967,0.804359561249193,0.000746144505392776,0.0163630267743034]
["Solyc12g100020","SL3.0ch12",67905056,67907056,"+",679,53,838,98,92.76,89.53,-3.2296483116155,0.0226463564740663,0,-3.91085760741443,1,1]
["Solyc12g100140","SL3.0ch12",67956977,67958977,"+",180,352,163,427,33.835,27.627,-6.2074678220976,0.0243224735389183,1.20942639961687,3.81081318018535,0.00131705651341109,0.0251379281599188]

{"sheet":"PHYB1B2_vsWT_BK_hypermethlated","index":7,"n_rows":16851,"n_cols":17,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Supplementary Table 12. Total differentially methylated promoters (DMPs) in CG context"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYB1B2","unmet_PHYB1B2","X.met_WT","X.met_PHYB1B2","X.diff_PHYB1B2.ctrl","FDR_diff_PHYB1B2.WT","logFC_PHYB1B2","logCPM_PHYB1B2","PValue_PHYB1B2","padj_PHYB1B2"]
["Solyc00g005285","SL3.0ch00",2356500,2358500,"-",234,38,307,21,86.029,93.598,7.5681492109039,0.00270267758798979,0,-3.87049148702182,1,1]
["Solyc00g005840","SL3.0ch00",3431254,3433254,"-",842,169,873,115,83.284,88.36,5.0764465374804,0.00164078601443044,0.837137484672467,3.84266514413295,0.0498155402686977,0.31885850539549]
["Solyc00g006090","SL3.0ch00",4007717,4009717,"+",350,19,255,1,94.851,99.609,4.7584264905149,9.08166800998022E-4,0,-3.91085760741443,1,1]
["Solyc00g006480","SL3.0ch00",4232311,4234311,"+",143,113,305,37,55.859,89.181,33.321911549708,1.53249135121992E-19,0,-3.91085760741443,1,1]
["Solyc00g006490","SL3.0ch00",4295107,4297107,"+",994,460,1063,406,68.363,72.362,3.999014947147,0.0174830512837964,-0.222283107716461,5.20433464544667,0.412361765160252,1]
["Solyc00g006560","SL3.0ch00",4583304,4585304,"-",140,22,290,16,86.42,94.771,8.3514887436456,0.00273747509342101,0,-3.91085760741443,1,1]
["Solyc00g006805","SL3.0ch00",5780749,5782749,"-",606,97,550,35,86.202,94.017,7.8151025519447,6.65884026774796e-06,0.216038328688776,-2.36691828856068,0.933881245757083,1]
["Solyc00g006850","SL3.0ch00",6240615,6242615,"-",1292,146,1222,105,89.847,92.087,2.2404054865619,0.0388292940221192,0,-3.91085760741443,1,1]
["Solyc00g006867","SL3.0ch00",6390079,6392079,"+",86,381,183,334,18.415,35.397,16.981100816355,8.02349364123296e-09,1.81735752678876,-0.558251759538668,0.0436852225871048,0.292423539929366]
["Solyc00g007550","SL3.0ch00",6650039,6652039,"-",773,485,1007,452,61.447,69.02,7.5731357693217,6.14069165607833e-05,3.85241885635068,-3.43052628147651,0.267023879796986,0.847591022855933]
["Solyc00g007980","SL3.0ch00",6942523,6944523,"-",190,18,187,5,91.346,97.396,6.0496794871795,0.00985084708582982,0,-3.91085760741443,1,1]
["Solyc00g008030","SL3.0ch00",6993244,6995244,"-",360,82,368,55,81.448,86.998,5.5496721329012,0.0230915391387997,0,-3.91085760741443,1,1]
["Solyc00g008150","SL3.0ch00",7145063,7147063,"-",24,6,40,0,80,100,20,0.00493817620630678,0,-3.91085760741443,1,1]
["Solyc00g008260","SL3.0ch00",7277831,7279831,"+",1707,153,1566,98,91.774,94.111,2.3363833746898,0.00741420287353428,0,-3.91085760741443,1,1]
["Solyc00g008800","SL3.0ch00",7659775,7661775,"-",675,86,480,37,88.699,92.843,4.1442467281928,0.0146806388259519,0,-3.91085760741443,1,1]
["Solyc00g009020","SL3.0ch00",7793998,7795998,"+",1301,193,1334,102,87.082,92.897,5.8152759599214,4.01744532445882e-07,0.190117269525115,7.62400916820391,0.459075707578805,1]
["Solyc00g009030","SL3.0ch00",7802222,7804222,"-",601,578,714,484,50.975,59.599,8.6239293365674,4.43257642523785e-05,0.639813686083865,-2.21618464730913,0.770119319513824,1]
["Solyc00g009050","SL3.0ch00",7822149,7824149,"-",1730,256,2250,113,87.11,95.218,8.1081749137743,1.73570555043282E-20,5.87051709319639,-1.83143939226503,0.00260560370971653,0.0416803369808322]
["Solyc00g009060","SL3.0ch00",7824190,7826190,"+",811,578,1160,691,58.387,62.669,4.281498647045,0.0141561769408199,-0.465970909715643,4.70453708216914,0.110427499895584,0.517799005802995]
["Solyc00g009070","SL3.0ch00",7829317,7831317,"-",637,713,922,743,47.185,55.375,8.1901901901902,1.48690173326462e-05,0,-3.91085760741443,1,1]
["Solyc00g009080","SL3.0ch00",7829231,7831231,"+",637,703,922,720,47.537,56.151,8.6137218899413,5.96693771238658e-06,0.28544828785722,3.62499260680716,0.478855561418004,1]
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