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["Supplementary Table 11. Total differentially methylated promoters (DMPs) in breaker fruits in all mC contexts"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYA","unmet_PHYA","X.met_WT","X.met_PHYA","X.diff_PHYA.ctrl","FDR_diff_PHYA.WT","logFC_PHYA","logCPM_PHYA","PValue_PHYA","padj_PHYA"]
["Solyc00g005040","SL3.0ch00",546343,548343,"+",6217,7413,6915,9097,45.613,43.186,-2.4262589924761,{"v":2.76343358587757E-5,"d":"2.76E-05"},-0.0121004254931647,1.9093515385174,0.990056668962073,1]
["Solyc00g005450","SL3.0ch00",2464349,2466349,"+",1806,5581,1369,4762,24.448,22.329,-2.1192082605454,0.00256942000439614,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g006510","SL3.0ch00",4370359,4372359,"+",163,177,307,906,47.941,25.309,-22.632025604966,{"v":2.45228955636175E-14,"d":"2.45E-14"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g006560","SL3.0ch00",4583304,4585304,"-",493,1436,604,2002,25.557,23.177,-2.3800003739824,0.0351057420883219,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g006590","SL3.0ch00",5032575,5034575,"-",1513,5619,1341,5844,21.214,18.664,-2.5503625636228,0.000122145560253082,0.40731068772844,-3.61150191654465,1,1]
["Solyc00g006680","SL3.0ch00",5629656,5631656,"+",49034,42387,15090,13404,53.635,52.959,-0.67686159718934,0.0244646695587106,-0.137645912798229,-3.31507523247684,1,1]
["Solyc00g006820","SL3.0ch00",5819900,5821900,"+",4846,9634,4333,9623,33.467,31.048,-2.4192727261211,{"v":1.40109689236495e-05,"d":"1.40E-05"},-1.12822449605065,1.61308375064248,0.333196526132593,1]
["Solyc00g008160","SL3.0ch00",7159867,7161867,"-",1219,871,620,503,58.325,55.209,-3.1160979433933,0.0461234494821224,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g009090","SL3.0ch00",7841622,7843622,"-",2902,9421,2829,9687,23.549,22.603,-0.94639228581216,0.0396372778467457,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.59635664645328,1,1]
["Solyc00g009110","SL3.0ch00",7871111,7873111,"+",583,9386,556,10332,5.848,5.107,-0.74158989119024,0.0110196072173679,0.250780271173263,3.27195840491963,0.697213681643249,1]
["Solyc00g009146","SL3.0ch00",8215570,8217570,"-",1231,2161,1111,2172,36.291,33.841,-2.450274498704,0.0206519689378058,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.87428074584103,1,1]
["Solyc00g013110","SL3.0ch00",9719089,9721089,"-",308,2207,723,6515,12.247,9.989,-2.2575736517617,0.00127100239868606,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g013120","SL3.0ch00",9726388,9728388,"-",1119,1961,1529,5744,36.331,21.023,-15.30820719223,{"v":4.31015348725521e-56,"d":"4.31E-56"},5.18393241741616,-3.04179885224491,0.0765687606248311,0.486104265180859]
["Solyc00g013130","SL3.0ch00",9727452,9729452,"-",2198,6779,2549,17737,24.485,12.565,-11.919478493304,{"v":1.02731529457395E-133,"d":"1.03E-133"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.50606629457688,1,1]
["Solyc00g013133","SL3.0ch00",9727784,9729784,"-",2433,7354,3175,20295,24.86,13.528,-11.331599542344,{"v":3.64718174160526e-130,"d":"3.65E-130"},2.56982831264948,-3.38388112100868,0.635575684928415,1]
["Solyc00g013137","SL3.0ch00",9730078,9732078,"-",583,1519,1272,4408,27.735,22.394,-5.3411238123316,{"v":1.4647233463732e-06,"d":"1.46E-06"},-2.86373073201995,-3.78951150766205,0.650135920579804,1]
["Solyc00g013140","SL3.0ch00",9737602,9739602,"-",4416,24681,5563,56172,15.177,9.011,-6.1657265400718,{"v":1.58811955252972e-159,"d":"1.59E-159"},-0.527304947979384,-1.03249406421298,0.608796220114743,1]
["Solyc00g013150","SL3.0ch00",9736648,9738648,"+",4147,35558,5681,77917,10.445,6.796,-3.6489112769005,{"v":3.93577663780105e-102,"d":"3.94E-102"},0.347030758434175,-2.82133188471744,0.821581357377339,1]
["Solyc00g013155","SL3.0ch00",9739388,9741388,"-",1566,10601,2090,25120,12.871,7.681,-5.1898806173681,{"v":5.12341026127901e-56,"d":"5.12E-56"},4.84886694567585,-3.15174374011737,0.1255423639893,0.633408903677682]
["Solyc00g013160","SL3.0ch00",9741809,9743809,"-",2564,21159,4091,48147,10.808,7.831,-2.9766128647436,{"v":1.20399859947232e-38,"d":"1.20E-38"},1.10990615145538,-1.09183566663966,0.243631779396249,0.879070058049534]
["Solyc00g013170","SL3.0ch00",9740381,9742381,"+",2785,16009,3997,41265,14.819,8.831,-5.9877518148894,{"v":1.20081668649238e-103,"d":"1.20E-103"},2.88564127525632,-1.39935424343059,0.0104967023152805,0.133801157666769]
["Solyc00g013180","SL3.0ch00",9744467,9746467,"-",2730,14308,3198,36738,16.023,8.008,-8.0151948952342,{"v":3.46470371856964e-167,"d":"3.46E-167"},4.81346475633077,-2.8354164280273,0.0287932551106253,0.266462392961667]
["Solyc00g014810","SL3.0ch00",10115885,10117885,"-",471,19843,889,42163,2.319,2.065,-0.25365329320836,0.0230642962734638,-3.29037960635611,-3.76263483517518,0.465131185202713,1]
["Solyc00g014830","SL3.0ch00",10125614,10127614,"-",562,19726,822,46162,2.77,1.75,-1.0205786546034,{"v":3.49343555931757e-16,"d":"3.49E-16"},-1.94600010205589,-1.51507708153946,0.142127590181532,0.676444296604048]
["Solyc00g014840","SL3.0ch00",10123786,10125786,"+",426,15065,673,39090,2.75,1.693,-1.0574556318357,{"v":3.29247110743969e-14,"d":"3.29E-14"},4.04222189035792,-3.38395309736054,0.283536625048218,0.947187634699231]
["Solyc00g014850","SL3.0ch00",10127315,10129315,"-",491,21405,943,49653,2.242,1.864,-0.37863500829701,0.000696064821512702,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.66396835085831,1,1]
["Solyc00g014860","SL3.0ch00",10128237,10130237,"-",523,23356,981,53360,2.19,1.805,-0.38494222872215,0.000295821563160717,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.87428074584103,1,1]
["Solyc00g019620","SL3.0ch00",10819131,10821131,"-",2713,19662,3552,32031,12.125,9.982,-2.1428447486928,{"v":3.2227869980914e-15,"d":"3.22E-15"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g019630","SL3.0ch00",10819968,10821968,"-",6316,57308,7281,101161,9.927,6.714,-3.2128833156761,{"v":1.20831552866836E-120,"d":"1.21E-120"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g019730","SL3.0ch00",10829313,10831313,"-",4602,41978,6160,68645,9.88,8.235,-1.6450330613423,{"v":1.27146133937244e-21,"d":"1.27E-21"},2.88126792077287,-2.03310401875312,0.075225729895827,0.481509288996768]
["Solyc00g019740","SL3.0ch00",10830415,10832415,"-",5735,52874,7646,80888,9.785,8.636,-1.1489564265713,{"v":2.320475569144e-13,"d":"2.32E-13"},1.28264287403544,-1.30025223554522,0.439805747234231,1]
["Solyc00g019750","SL3.0ch00",10831749,10833749,"-",2072,12004,2421,18064,14.72,11.818,-2.901687224893,{"v":1.58896860450079e-14,"d":"1.59E-14"},-2.39038210178159,-3.27883722145106,0.391934759722861,1]
["Solyc00g019990","SL3.0ch00",10849082,10851082,"+",661,26351,1324,59121,2.447,2.19,-0.25663952175029,0.0114024620487596,-1.97361039531512,-3.1185954677597,0.510709405402618,1]
["Solyc00g020000","SL3.0ch00",10850676,10852676,"+",1213,35372,1661,63235,3.316,2.559,-0.75608670596075,{"v":1.39399261370013E-11,"d":"1.39E-11"},3.7754070379776,-3.50132037671225,0.217762173351408,0.833215167959851]
["Solyc00g020010","SL3.0ch00",10853344,10855344,"-",4303,29484,5222,60646,12.736,7.928,-4.8076903979937,{"v":4.51444807456316e-125,"d":"4.51E-125"},-2.91399587475337,-3.39344519584705,0.264290440929867,0.915034139643448]
["Solyc00g020020","SL3.0ch00",10851713,10853713,"+",1248,36647,1547,68556,3.293,2.207,-1.0865575424194,{"v":4.18262732266116e-25,"d":"4.18E-25"},-0.892926755401264,-3.05381982949616,0.849722338982258,1]
["Solyc00g020030","SL3.0ch00",10854853,10856853,"-",5404,29835,6209,63064,15.335,8.963,-6.3721938601187,{"v":4.31390326324906e-200,"d":"4.31E-200"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g020040","SL3.0ch00",10854013,10856013,"+",5755,29872,6443,65247,16.153,8.987,-7.1661726445652,{"v":1.72941506875754e-251,"d":"1.73E-251"},-3.52507808538219,-2.82130233030166,0.11518410687319,0.605868402152977]
["Solyc00g021630","SL3.0ch00",11015632,11017632,"-",1289,41797,1783,73853,2.992,2.357,-0.63434797238224,{"v":1.28349764423775e-10,"d":"1.28E-10"},-1.6905155862302,-1.98897428580773,0.314696930131688,0.990325534847482]
["Solyc00g021650","SL3.0ch00",11017610,11019610,"+",800,34111,1269,63636,2.292,1.955,-0.33637610649238,0.000346748077987584,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g021655","SL3.0ch00",11037440,11039440,"+",2515,1359,3812,2245,64.92,62.935,-1.9845327587881,0.0249841184692083,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g022070","SL3.0ch00",11051610,11053610,"+",3469,21489,4345,41588,13.899,9.459,-4.4399208701228,{"v":5.48862206680653e-69,"d":"5.49E-69"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.87282557379725,1,1]
["Solyc00g022080","SL3.0ch00",11055560,11057560,"-",1433,52677,2093,112061,2.648,1.833,-0.81482090515529,{"v":1.04800361140023e-25,"d":"1.05E-25"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g022100","SL3.0ch00",11059261,11061261,"-",814,45142,1579,96820,1.771,1.605,-0.16656836099137,0.0123598309022284,0.655931811135432,-1.54422382049232,0.659434503557816,1]
["Solyc00g022103","SL3.0ch00",11060109,11062109,"-",832,40098,1581,90742,2.033,1.712,-0.32027280632734,{"v":5.62695917491165e-05,"d":"5.63E-05"},0.252948044829824,-0.130365875463047,0.759485330303792,1]
["Solyc00g022107","SL3.0ch00",11072272,11074272,"-",3919,13263,3513,13720,22.809,20.385,-2.4234460871974,{"v":6.95827682193502e-08,"d":"6.96E-08"},0.688424692922675,-2.03864792398076,0.656727379732835,1]
["Solyc00g023050","SL3.0ch00",11146810,11148810,"-",13885,27075,14045,28670,33.899,32.881,-1.0182047230737,1.30966928013332E-3,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g023570","SL3.0ch00",11184688,11186688,"-",652,28708,1111,60496,2.221,1.803,-0.41734194630648,{"v":2.4138635812239e-05,"d":"2.41E-05"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.8720324817543,1,1]
["Solyc00g023580","SL3.0ch00",11182928,11184928,"+",648,23729,1107,52318,2.658,2.072,-0.58617978556273,{"v":6.38697187931879e-07,"d":"6.39E-07"},-3.8012959854011,-3.69406116842406,0.291841421407309,0.958582396140556]
["Solyc00g023710","SL3.0ch00",11199671,11201671,"-",1514,10592,2556,23331,12.506,9.874,-2.6325135042972,{"v":6.7026435646181e-14,"d":"6.70E-14"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.87428074584103,1,1]
["Solyc00g025290","SL3.0ch00",11313892,11315892,"+",2727,15205,2831,33024,15.207,7.896,-7.3117593905086,{"v":1.35675658040132E-142,"d":"1.36E-142"},-1.22819715601118,-1.17447558515912,0.501848845450273,1]
["Solyc00g025300","SL3.0ch00",11317263,11319263,"-",3195,17163,3585,44986,15.694,7.381,-8.3131285599553,{"v":2.62421309513501e-225,"d":"2.62E-225"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.77033964572029,1,1]
["Solyc00g025400","SL3.0ch00",11325650,11327650,"-",1702,65190,3289,140189,2.544,2.292,-0.25206242702284,3.60516529655658E-4,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.79760289006955,1,1]
["Solyc00g029090","SL3.0ch00",11565899,11567899,"-",4030,3574,3706,4328,52.998,46.129,-6.8694699290247,{"v":4.21180112013327e-17,"d":"4.21E-17"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g029190","SL3.0ch00",11564413,11566413,"+",955,952,1015,1173,50.079,46.389,-3.689260868023,0.010968600315795,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g030000","SL3.0ch00",11624489,11626489,"-",6083,7212,8275,12182,45.754,40.451,-5.3033414018816,{"v":4.43076259350137E-21,"d":"4.43E-21"},4.42661302394963,-3.47695362856055,0.113786614703275,0.6023264221854]
["Solyc00g030100","SL3.0ch00",11623845,11625845,"+",12481,12627,18311,20680,49.709,46.962,-2.7471365505535,{"v":2.58052903101113e-11,"d":"2.58E-11"},1.81391028821106,-3.62703845704372,0.999999999999999,1]
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["Solyc00g036520","SL3.0ch00",11998809,12000809,"+",2210,18473,2483,30723,10.685,7.478,-3.2075394127503,{"v":8.64568459721322e-36,"d":"8.65E-36"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
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["Solyc00g041215","SL3.0ch00",12252041,12254041,"-",2336,3716,1940,3847,38.599,33.523,-5.075395760788,{"v":1.52627170812721e-08,"d":"1.53E-08"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
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["Solyc00g047700","SL3.0ch00",12579094,12581094,"-",1758,4571,2054,5897,27.777,25.833,-1.9436714594858,0.00597026547948449,0.161406939589842,7.4350914083982,0.594492835277408,1]
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["Solyc12g099400","SL3.0ch12",67546725,67548725,"-",3784,7040,3839,8796,34.959,30.384,-4.5754952207219,{"v":2.69620389238875E-13,"d":"2.70E-13"},0.0708950441633407,4.36295945458074,0.858149092131856,1]
["Solyc12g099410","SL3.0ch12",67545982,67547982,"+",3323,5981,3369,7561,35.716,30.823,-4.8923993772612,{"v":5.19934751444227e-13,"d":"5.20E-13"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.79586472962067,1,1]
["Solyc12g099420","SL3.0ch12",67550697,67552697,"+",208,2027,36,1115,9.306,3.128,-6.1787726653411,{"v":7.63409575992085E-12,"d":"7.63E-12"},-0.581418301735325,3.79986932988691,0.0846341326118266,0.511869065820056]
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["Solyc12g099600","SL3.0ch12",67668528,67670528,"+",2092,7262,1911,8654,22.365,18.088,-4.2767372348356,{"v":1.95615540063996e-13,"d":"1.96E-13"},0.612488759963513,3.96312420906162,0.0893445124661166,0.526991181050141]
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["Solyc12g099730","SL3.0ch12",67732711,67734711,"-",1702,6189,1481,6099,21.569,19.538,-2.0306173594112,0.00128273781936547,6.28735206123485,-2.87597208106449,0.0636323074877246,0.436015397360332]
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["Solyc12g100040","SL3.0ch12",67922372,67924372,"-",1931,6508,1643,6406,22.882,20.412,-2.4693844408473,0.000108841121573468,-0.289068295033627,4.18102588021319,0.339188527973262,1]
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["Solyc12g100240","SL3.0ch12",68007861,68009861,"-",917,3801,815,3922,19.436,17.205,-2.2312197242617,0.00343942647706238,8.1282390733056,-0.75790139990311,0.00439743361610382,0.0719192526661186]
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["Solyc12g100330","SL3.0ch12",68068710,68070710,"+",347,3146,277,3885,9.934,6.655,-3.2786999137287,{"v":3.13427533737387e-07,"d":"3.13E-07"},-0.260654353642884,5.77562078176169,0.376857468899633,1]

{"sheet":"PHYA_hyper_DMP_BK_All","index":1,"n_rows":15873,"n_cols":17,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Supplementary Table 11. Total differentially methylated promoters (DMPs) in breaker fruits in all mC contexts"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYA","unmet_PHYA","X.met_WT","X.met_PHYA","X.diff_PHYA.ctrl","FDR_diff_PHYA.WT","logFC_PHYA","logCPM_PHYA","PValue_PHYA","padj_PHYA"]
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["Solyc00g005084","SL3.0ch00",807592,809592,"+",1708,4503,1852,3848,27.5,32.491,4.9916305818483,{"v":5.25508193819714e-09,"d":"5.26E-09"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g005092","SL3.0ch00",1125793,1127793,"+",1561,6791,2169,8770,18.69,19.828,1.138003755763,0.0261066563919429,-2.25253814979463,-1.17335822979058,0.146312351198395,0.687958482669144]
["Solyc00g005094","SL3.0ch00",1146952,1148952,"-",6291,7593,8110,9036,45.311,47.3,1.9885122040504,0.000381820989224103,-1.48798212462246,5.51213579848507,0.01172849797744,0.144607002984169]
["Solyc00g005096","SL3.0ch00",1732561,1734561,"+",2602,7810,3623,9526,24.99,27.553,2.5630304187821,{"v":9.85674116626414e-06,"d":"9.86E-06"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g005280","SL3.0ch00",2188964,2190964,"+",1215,1013,1747,1152,54.533,60.262,5.7289457207741,{"v":3.83387297390627E-5,"d":"3.83E-05"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g005283","SL3.0ch00",2354618,2356618,"-",1468,3545,1575,3096,29.284,33.719,4.4348278291471,{"v":3.19725915688576e-06,"d":"3.20E-06"},2.22145840938365,-3.22628728327423,0.328960834024076,1]
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["Solyc00g005440","SL3.0ch00",2365409,2367409,"-",2041,3889,2556,4495,34.418,36.25,1.8319648008977,0.0166792037923852,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g005445","SL3.0ch00",2377779,2379779,"-",1166,2081,1448,1741,35.91,45.406,9.4960125771112,{"v":3.08562108876443e-14,"d":"3.09E-14"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g005460","SL3.0ch00",2490753,2492753,"-",2408,4483,1941,3192,34.944,37.814,2.8700137509,0.000932214184436876,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g005470","SL3.0ch00",2491481,2493481,"-",2048,3420,1837,2629,37.454,41.133,3.6787254820703,0.000168979204495955,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc00g005840","SL3.0ch00",3431254,3433254,"-",3577,9048,3513,8147,28.333,30.129,1.795971672639,0.00153347228020368,1.04419105664009,3.84266514413295,0.0144072627014657,0.166931963817954]
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["Solyc12g099520","SL3.0ch12",67627400,67629400,"-",2024,3767,2241,3871,34.951,36.666,1.7147902142791,0.0281907356643031,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc12g099540","SL3.0ch12",67641984,67643984,"-",722,2034,1242,2150,26.197,36.616,10.418178519594,{"v":1.15885312007854E-17,"d":"1.16E-17"},1.97216476816351,0.246625329534406,0.069710554608431,0.461320770444362]
["Solyc12g099560","SL3.0ch12",67653513,67655513,"-",8852,8394,11490,8821,51.328,56.57,5.2424872097746,{"v":2.36459633248222E-23,"d":"2.36E-23"},0.0601052115749595,3.78256418239679,0.894721189752134,1]
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["Solyc12g099810","SL3.0ch12",67788669,67790669,"-",751,5071,1160,6962,12.899,14.282,1.3828491999921,0.0117413792840377,-0.153802775882302,4.41427697293298,0.69320211197503,1]
["Solyc12g099850","SL3.0ch12",67807817,67809817,"-",0,10,474,495,0,48.916,48.916408668731,1.38893238382452E-3,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc12g099910","SL3.0ch12",67830642,67832642,"+",12657,6780,17198,8571,65.118,66.739,1.6210313494972,0.000259801570464964,-0.32626914191305,6.38411987643982,0.26325956191312,0.913534015835025]
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["Solyc12g100030","SL3.0ch12",67909484,67911484,"+",19,291,19,147,6.129,11.446,5.3167508744656,0.0268899877036546,1.85218708093554,-2.88375557873936,1,1]
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["Solyc12g100100","SL3.0ch12",67934890,67936890,"+",2094,5415,2217,4732,27.887,31.904,4.0173349039722,{"v":2.0148038959997e-07,"d":"2.01E-07"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc12g100140","SL3.0ch12",67956977,67958977,"+",1110,4407,1053,3670,20.12,22.295,2.1755211530077,0.00479193652337939,-0.445120507283949,3.81081318018535,0.244161981157403,0.879537221376206]
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["Solyc12g100190","SL3.0ch12",67985361,67987361,"+",44,1252,39,657,3.395,5.603,2.208386547467,0.0141739739429015,{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.44545179798966,1,1]
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["Solyc12g100300","SL3.0ch12",68050958,68052958,"+",5450,7250,5087,6251,42.913,44.867,1.9534337181216,1.62461241884501E-3,-0.616078534229098,-1.78227665393969,0.539251420014693,1]
["Solyc12g100340","SL3.0ch12",68086246,68088246,"-",5964,9610,7845,11169,38.295,41.259,2.9644787091852,{"v":3.4456022946541e-08,"d":"3.45E-08"},{"v":-5.12548240610387e-15,"d":"-5.13E-15"},-3.91085760741443,1,1]
["Solyc12g100350","SL3.0ch12",68089938,68091938,"+",7719,7454,10333,8084,50.873,56.106,5.2325101263453,{"v":6.7665373738645e-21,"d":"6.77E-21"},0.160988254401608,-0.782669363899267,0.942733073223583,1]

{"sheet":"PHYB1B2_hypo_DMP_BK_All","index":2,"n_rows":8498,"n_cols":17,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Supplementary Table 11. Total differentially methylated promoters (DMPs) in breaker fruits in all mC contexts"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYB1B2","unmet_PHYB1B2","X.met_WT","X.met_PHYB1B2","X.diff_PHYB1B2.ctrl","FDR_diff_PHYB1B2.WT","logFC_PHYB1B2","logCPM_PHYB1B2","PValue_PHYB1B2","padj_PHYB1B2"]
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["Solyc00g005040","SL3.0ch00",546343,548343,"+",6217,7413,6676,9582,45.613,41.063,-4.5497578617428,{"v":6.59364352961775e-15,"d":"6.59E-15"},0.425093032391605,1.9093515385174,0.34985315611091,0.966195893156812]
["Solyc00g005050","SL3.0ch00",575385,577385,"-",4857,6906,4614,8072,41.29,36.371,-4.9196846612284,{"v":7.65658045701515e-15,"d":"7.66E-15"},-0.0145324026414522,6.25879772751795,0.956543768440776,1]
["Solyc00g005060","SL3.0ch00",724013,726013,"-",689,1130,193,449,37.878,30.062,-7.8156496243357,0.000292418837390559,0,-3.91085760741443,1,1]
["Solyc00g005090","SL3.0ch00",1061916,1063916,"-",261,590,307,1056,30.67,22.524,-8.1459557742693,{"v":2.26166053243966E-5,"d":"2.26E-05"},0,-3.91085760741443,1,1]
["Solyc00g005280","SL3.0ch00",2188964,2190964,"+",1215,1013,1526,1407,54.533,52.029,-2.5045740263858,0.0372625149779784,0,-3.91085760741443,1,1]
["Solyc00g005283","SL3.0ch00",2354618,2356618,"-",1468,3545,951,2624,29.284,26.601,-2.6824633575082,0.00392624068921644,0.722325688227394,-3.22628728327423,0.999999999999998,1]
["Solyc00g005285","SL3.0ch00",2356500,2358500,"-",1166,2506,1390,3316,31.754,29.537,-2.2170510552051,0.0158431379626992,0,-3.87049148702182,1,1]
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["Solyc00g005440","SL3.0ch00",2365409,2367409,"-",2041,3889,1702,3766,34.418,31.127,-3.291657980018,0.000147342081751595,0,-3.91085760741443,1,1]
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["Solyc00g005460","SL3.0ch00",2490753,2492753,"-",2408,4483,1511,3528,34.944,29.986,-4.9580216698376,{"v":1.53004347554787e-08,"d":"1.53E-08"},0,-3.91085760741443,1,1]
["Solyc00g005470","SL3.0ch00",2491481,2493481,"-",2048,3420,1399,2859,37.454,32.856,-4.5984785985707,{"v":2.59482735180514e-06,"d":"2.59E-06"},0,-3.91085760741443,1,1]
["Solyc00g005480","SL3.0ch00",2610590,2612590,"+",602,1225,649,1726,32.95,27.326,-5.6238757814075,{"v":7.36350838771738e-05,"d":"7.36E-05"},0,-3.91085760741443,1,1]
["Solyc00g005840","SL3.0ch00",3431254,3433254,"-",3577,9048,3135,8341,28.333,27.318,-1.0147924726247,0.0386642691662957,0.837137484672467,3.84266514413295,0.0498155402686977,0.31885850539549]
["Solyc00g006090","SL3.0ch00",4007717,4009717,"+",804,1083,526,901,42.607,36.861,-5.7467665942871,0.000617592955417715,0,-3.91085760741443,1,1]
["Solyc00g006170","SL3.0ch00",4099287,4101287,"+",1348,1391,1339,1737,49.215,43.531,-5.684482818376,{"v":1.40051746960187e-05,"d":"1.40E-05"},0,-3.91085760741443,1,1]
["Solyc00g005903","SL3.0ch00",4162096,4164096,"+",17183,11302,14489,11123,60.323,56.571,-3.7518384766268,{"v":3.15523180188585e-18,"d":"3.16E-18"},0,-3.91085760741443,1,1]
["Solyc00g005907","SL3.0ch00",4172134,4174134,"+",18828,13188,15800,12229,58.808,56.37,-2.4379079324728,{"v":2.39538936650249e-09,"d":"2.40E-09"},0,-3.91085760741443,1,1]
["Solyc00g006483","SL3.0ch00",4286251,4288251,"-",1859,3562,1673,3806,34.293,30.535,-3.7577968287899,{"v":2.58285999846926e-05,"d":"2.58E-05"},0,-3.91085760741443,1,1]
["Solyc00g006487","SL3.0ch00",4287311,4289311,"-",3820,5228,4610,6618,42.219,41.058,-1.1612058649637,0.0461226117819676,0,-3.91085760741443,1,1]
["Solyc00g006510","SL3.0ch00",4370359,4372359,"+",163,177,420,1011,47.941,29.35,-18.591071648785,{"v":2.43065351380747e-10,"d":"2.43E-10"},0,-3.91085760741443,1,1]
["Solyc00g006540","SL3.0ch00",4386391,4388391,"-",2116,4778,2668,6510,30.693,29.07,-1.6238424865708,0.0145225874918943,0,-3.91085760741443,1,1]
["Solyc00g006550","SL3.0ch00",4529463,4531463,"-",1424,5310,1432,6172,21.146,18.832,-2.3142275640961,0.00039925179370102,0,-3.91085760741443,1,1]
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["Solyc00g006655","SL3.0ch00",5619735,5621735,"-",693,619,167,187,52.82,47.175,-5.6449807082817,0.0315473347810933,0,-3.91085760741443,1,1]
["Solyc00g006660","SL3.0ch00",5628502,5630502,"+",580,333,123,102,63.527,54.667,-8.8601679445053,0.00979692887816811,0,-3.91085760741443,1,1]
["Solyc00g006680","SL3.0ch00",5629656,5631656,"+",49034,42387,4880,6117,53.635,44.376,-9.2596403419734,{"v":8.71077828801161e-74,"d":"8.71E-74"},2.25004503381293,-3.31507523247684,0.277680236936339,0.865886991401381]
["Solyc00g006805","SL3.0ch00",5780749,5782749,"-",5862,5989,4002,4612,49.464,46.459,-3.0049278581078,{"v":2.01043323817524E-5,"d":"2.01E-05"},0.216038328688776,-2.36691828856068,0.933881245757083,1]
["Solyc00g006810","SL3.0ch00",5784771,5786771,"+",4544,4967,3620,4584,47.776,44.125,-3.6514419060872,{"v":1.27431315111899e-06,"d":"1.27E-06"},-0.7354827677193,5.40261514279821,0.0207505426694962,0.176683519559436]
["Solyc00g006870","SL3.0ch00",6404880,6406880,"+",2573,5586,2729,6933,31.536,28.245,-3.291057576963,{"v":1.88549529918907E-6,"d":"1.89E-06"},0,-3.91085760741443,1,1]
["Solyc00g006890","SL3.0ch00",6446980,6448980,"+",2463,3417,2437,3913,41.888,38.378,-3.5098023461353,{"v":6.38042841284617e-05,"d":"6.38E-05"},0,-3.91085760741443,1,1]
["Solyc00g006900","SL3.0ch00",6518309,6520309,"+",1130,2768,1151,3125,28.989,26.918,-2.0715451688784,0.0199446448655143,1.76064708979632,-3.6619627034305,0.999999999999998,1]
["Solyc00g007560","SL3.0ch00",6672572,6674572,"+",3837,5789,4472,7421,39.861,37.602,-2.2588429564545,0.000521115449948171,0,-3.91085760741443,1,1]
["Solyc00g007570","SL3.0ch00",6677501,6679501,"-",3259,4497,3023,4913,42.019,38.092,-3.9268440978057,{"v":5.66562566999571e-07,"d":"5.67E-07"},0,-3.91085760741443,1,1]
["Solyc00g007950","SL3.0ch00",6926603,6928603,"-",489,603,195,385,44.78,33.621,-11.159530125047,{"v":1.02216614794676E-5,"d":"1.02E-05"},0,-3.91085760741443,1,1]
["Solyc00g007980","SL3.0ch00",6942523,6944523,"-",592,663,397,580,47.171,40.635,-6.53671903991,0.00151391404780995,0,-3.91085760741443,1,1]
["Solyc00g007990","SL3.0ch00",6954197,6956197,"+",367,313,6,14,53.971,30,-23.970588235294,0.0212251777371985,0,-3.91085760741443,1,1]
["Solyc00g008000","SL3.0ch00",6974073,6976073,"-",1044,1684,824,1543,38.27,34.812,-3.4577964113104,0.00654641602288785,0,-3.91085760741443,1,1]
["Solyc00g008060","SL3.0ch00",7070304,7072304,"-",1596,3004,1152,2429,34.696,32.17,-2.5258671976494,0.00965841022424469,0,-3.91085760741443,1,1]
["Solyc00g008140","SL3.0ch00",7121907,7123907,"-",397,404,221,324,49.563,40.55,-9.0125874766633,0.000847930899461966,0,-3.91085760741443,1,1]
["Solyc00g008160","SL3.0ch00",7159867,7161867,"-",1219,871,659,575,58.325,53.404,-4.9217932114801,0.00364215891837924,0,-3.91085760741443,1,1]
["Solyc00g008165","SL3.0ch00",7190282,7192282,"+",819,510,82,98,61.625,45.556,-16.069726611487,{"v":4.05976299641642e-05,"d":"4.06E-05"},0,-3.91085760741443,1,1]
["Solyc00g008270","SL3.0ch00",7309768,7311768,"+",1105,570,160,123,65.97,56.537,-9.4330467802331,1.62807758512603E-3,0,-3.91085760741443,1,1]
["Solyc00g008570","SL3.0ch00",7584122,7586122,"-",643953,348083,27785,31594,64.912,46.793,-18.11962412098,0,-0.378534275089891,4.3254472958713,0.505884165502298,1]
["Solyc00g008580","SL3.0ch00",7582182,7584182,"+",348063,306037,23446,34960,53.213,40.143,-13.069369753888,0,-0.11682368832629,5.85972231049318,0.854529952600251,1]
["Solyc00g008910","SL3.0ch00",7693875,7695875,"+",4042,2351,3865,2791,63.225,58.068,-5.1574941304492,{"v":2.46293189810924e-09,"d":"2.46E-09"},0,-3.91085760741443,1,1]
["Solyc00g009120","SL3.0ch00",7879497,7881497,"+",266,1731,255,2255,13.32,10.159,-3.1606174201541,0.000717609523597332,1.24339376020182,2.57936200962484,0.0430465309877734,0.28934826232431]
["Solyc00g009142","SL3.0ch00",8038913,8040913,"+",3685,2255,3395,2657,62.037,56.097,-5.9398790727277,{"v":6.37701926626e-11,"d":"6.38E-11"},0,-3.91085760741443,1,1]
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["Solyc12g099860","SL3.0ch12",67798869,67800869,"+",40,470,13,392,7.843,3.21,-4.6332607116921,0.00174641915163858,-0.263958844098276,0.874389676198254,0.613725551850923,1]
["Solyc12g099870","SL3.0ch12",67816286,67818286,"-",228,827,83,655,21.611,11.247,-10.364761941458,{"v":9.06532343229853e-09,"d":"9.07E-09"},0,-2.7293305007382,1,1]
["Solyc12g099880","SL3.0ch12",67817606,67819606,"-",121,974,35,443,11.05,7.322,-3.7280525782847,0.0121399117458867,0,-3.14200809435297,1,1]
["Solyc12g099890","SL3.0ch12",67823928,67825928,"-",4466,6945,4972,8994,39.138,35.601,-3.5369295084261,{"v":9.73329475415995e-09,"d":"9.73E-09"},0.37504180743506,5.41789883431855,0.217876919705857,0.761513764187414]
["Solyc12g099980","SL3.0ch12",67888402,67890402,"-",36,952,15,751,3.644,1.958,-1.6855001532753,0.0228152144955257,5.67953258133967,0.804359561249193,0.000746144505392776,0.0163630267743034]
["Solyc12g100000","SL3.0ch12",67893948,67895948,"+",221,702,211,967,23.944,17.912,-6.031947201033,0.000531516175126848,-0.221317604896178,5.03909922455397,0.442006548311373,1]
["Solyc12g100160","SL3.0ch12",67968728,67970728,"+",9498,8643,10530,9985,52.357,51.328,-1.0282440647619,0.0229576904215251,-0.916701673541591,5.1043759689953,0.0114404840416871,0.115236055534516]
["Solyc12g100170","SL3.0ch12",67973773,67975773,"+",206,1673,106,2269,10.963,4.463,-6.5001204448055,{"v":2.09651205739534e-15,"d":"2.10E-15"},6.58475308073962,-0.840707422538963,0.0029491791284651,0.0452925028196392]
["Solyc12g100270","SL3.0ch12",68021914,68023914,"+",917,3573,1387,6209,20.423,18.26,-2.1635522622972,0.00237964295779188,11.045793695664,2.63727115791274,0.000312550408634253,0.00845635629049166]
["Solyc12g100280","SL3.0ch12",68030644,68032644,"-",1665,3277,1979,4344,33.691,31.298,-2.3923791483342,0.004458260132202,0,-3.76922177802069,1,1]
["Solyc12g100300","SL3.0ch12",68050958,68052958,"+",5450,7250,5262,7407,42.913,41.534,-1.3789316472784,0.0145755172597656,-1.09274219681248,-1.78227665393969,0.300992077044751,0.897755554681175]

{"sheet":"PHYB1B2_hyper_DMP_BK_All","index":3,"n_rows":16453,"n_cols":17,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Supplementary Table 11. Total differentially methylated promoters (DMPs) in breaker fruits in all mC contexts"]
["ID","chr","from","to","strand","met_WT","unmet_WT","met_PHYB1B2","unmet_PHYB1B2","X.met_WT","X.met_PHYB1B2","X.diff_PHYB1B2.ctrl","FDR_diff_PHYB1B2.WT","logFC_PHYB1B2","logCPM_PHYB1B2","PValue_PHYB1B2","padj_PHYB1B2"]
["Solyc00g005084","SL3.0ch00",807592,809592,"+",1708,4503,1907,4657,27.5,29.052,1.5528095805333,0.0263320414289204,0,-3.91085760741443,1,1]
["Solyc00g005092","SL3.0ch00",1125793,1127793,"+",1561,6791,1819,7252,18.69,20.053,1.362781786173,0.0129485974746666,-0.683413940598075,-1.17335822979058,0.677449449659555,1]
["Solyc00g005890","SL3.0ch00",3566909,3568909,"-",2426,3704,2655,3818,39.576,41.017,1.4406737586597,0.0485058530916511,0,-3.83813194985351,1,1]
["Solyc00g006480","SL3.0ch00",4232311,4234311,"+",287,1714,576,2365,14.343,19.585,5.2423465247995,{"v":1.81509914374109E-6,"d":"1.82E-06"},0,-3.91085760741443,1,1]
["Solyc00g006490","SL3.0ch00",4295107,4297107,"+",7650,9597,8780,10100,44.356,46.504,2.1486971942062,{"v":3.62797575449545e-05,"d":"3.63E-05"},-0.222283107716461,5.20433464544667,0.412361765160252,1]
["Solyc00g006800","SL3.0ch00",5775062,5777062,"+",7149,5105,8232,5579,58.34,59.605,1.2645291159724,0.0201476259843016,0.511194549628484,5.65500708364552,0.0900915218657262,0.461462631260675]
["Solyc00g006820","SL3.0ch00",5819900,5821900,"+",4846,9634,5547,10385,33.467,34.817,1.3498702357949,0.00776235398527174,1.57121783580727,1.61308375064248,0.0795324725747731,0.427198900593856]
["Solyc00g006867","SL3.0ch00",6390079,6392079,"+",246,6261,523,7820,3.781,6.269,2.4881842456941,{"v":1.24828298448605e-11,"d":"1.25E-11"},1.81735752678876,-0.558251759538668,0.0436852225871048,0.292423539929366]
["Solyc00g007550","SL3.0ch00",6650039,6652039,"-",2786,8461,3241,9110,24.771,26.241,1.4697401616222,5.75247054611552E-3,3.85241885635068,-3.43052628147651,0.267023879796986,0.847591022855933]
["Solyc00g007925","SL3.0ch00",6898252,6900252,"-",733,699,746,521,51.187,58.879,7.6920914666678,{"v":5.45212984539258e-05,"d":"5.45E-05"},0,-3.91085760741443,1,1]
["Solyc00g008010","SL3.0ch00",6985748,6987748,"-",62,58,223,136,51.667,62.117,10.450324976787,0.0268860009723101,0,-3.91085760741443,1,1]
["Solyc00g008020","SL3.0ch00",6991194,6993194,"-",90,263,185,147,25.496,55.723,30.22714085805,{"v":1.46283535731637e-15,"d":"1.46E-15"},0,-3.91085760741443,1,1]
["Solyc00g008030","SL3.0ch00",6993244,6995244,"-",938,1938,887,1604,32.615,35.608,2.9934467839437,0.0123565416253538,0,-3.91085760741443,1,1]
["Solyc00g008040","SL3.0ch00",7005181,7007181,"-",1344,2575,1521,2600,34.294,36.909,2.6140544769758,0.00824340133576928,0,-3.91085760741443,1,1]
["Solyc00g008090","SL3.0ch00",7086900,7088900,"-",367,878,596,1227,29.478,32.693,3.2154509425524,0.0312698245196363,0,-3.91085760741443,1,1]
["Solyc00g008150","SL3.0ch00",7145063,7147063,"-",66,134,53,17,33,75.714,42.714285714286,{"v":9.92960104142858e-10,"d":"9.93E-10"},0,-3.91085760741443,1,1]
["Solyc00g009020","SL3.0ch00",7793998,7795998,"+",3984,5515,4332,5170,41.941,45.59,3.6491450462089,{"v":4.61159445981788e-07,"d":"4.61E-07"},0.190117269525115,7.62400916820391,0.459075707578805,1]
["Solyc00g009050","SL3.0ch00",7822149,7824149,"-",11142,11494,13319,11999,49.222,52.607,3.3843635131825,{"v":3.02823980185424E-13,"d":"3.03E-13"},5.87051709319639,-1.83143939226503,0.00260560370971653,0.0416803369808322]
["Solyc00g009070","SL3.0ch00",7829317,7831317,"-",2925,7546,3779,8740,27.934,30.186,2.2518223832579,0.000149016909255594,0,-3.91085760741443,1,1]
["Solyc00g009080","SL3.0ch00",7829231,7831231,"+",2925,7526,3778,8660,27.988,30.375,2.3869059369993,{"v":6.39674291038825e-05,"d":"6.40E-05"},0.28544828785722,3.62499260680716,0.478855561418004,1]
["Solyc00g009090","SL3.0ch00",7841622,7843622,"-",2902,9421,3953,10499,23.549,27.353,3.8031551962616,{"v":2.26166319014723e-12,"d":"2.26E-12"},0,-3.59635664645328,1,1]
["Solyc00g009110","SL3.0ch00",7871111,7873111,"+",583,9386,1941,11241,5.848,14.725,8.8764952874165,{"v":1.04499603345563e-106,"d":"1.04E-106"},1.47506682181694,3.27195840491963,0.022500245987099,0.186250700298369]
["Solyc00g009140","SL3.0ch00",7885380,7887380,"+",1123,3258,1685,3445,25.633,32.846,7.2125868705597,{"v":3.22403016708713e-14,"d":"3.22E-14"},-0.937953818681007,3.36058126720056,0.0376763145216783,0.264634316652211]
["Solyc00g009141","SL3.0ch00",7897016,7899016,"-",10019,6618,11388,7042,60.221,61.791,1.5693651465751,1.74016597698334E-3,0.322742271561578,4.45932488007655,0.277519591143608,0.865847316386881]
["Solyc00g009148","SL3.0ch00",8298357,8300357,"+",4182,2876,2383,1458,59.252,62.041,2.7892223979112,2.93889803985264E-3,0,-3.91085760741443,1,1]
["Solyc00g009650","SL3.0ch00",8316387,8318387,"-",2658,1521,113,47,63.604,70.625,7.0212670495334,0.0381249021365761,0,-3.91085760741443,1,1]
["Solyc00g011890","SL3.0ch00",9403098,9405098,"-",4890,9224,6594,11527,34.646,36.389,1.7422699362981,0.000840237760448676,-0.320787952594974,7.36530330208955,0.330645478883871,0.941011149955126]
["Solyc00g017235","SL3.0ch00",10541075,10543075,"+",921,616,1506,870,59.922,63.384,3.4619125543003,0.016505363876694,0,-3.91085760741443,1,1]
["Solyc00g020545","SL3.0ch00",10945268,10947268,"+",33611,77144,19837,39815,30.347,33.255,2.9073803598469,{"v":7.23688504181121e-34,"d":"7.24E-34"},-2.57331702043306,-3.07629557896507,0.198185763578075,0.725039213630009]
["Solyc00g020940","SL3.0ch00",10946755,10948755,"+",42363,80797,24212,42388,34.397,36.354,1.9576346401614,{"v":4.74259618481781e-17,"d":"4.74E-17"},0,-3.91085760741443,1,1]
["Solyc00g023050","SL3.0ch00",11146810,11148810,"-",13885,27075,15406,29323,33.899,34.443,0.54405304680339,0.045268297165722,0,-3.91085760741443,1,1]
["Solyc00g024160","SL3.0ch00",11230391,11232391,"-",3104,15891,3245,14618,16.341,18.166,1.8248991324791,{"v":3.6951040287872E-6,"d":"3.70E-06"},3.65209184002688,-3.38126235307709,0.340695365285218,0.954117743933737]
["Solyc00g026160","SL3.0ch00",11372264,11374264,"+",17479,18481,13072,11830,48.607,52.494,3.8869902833345,{"v":1.64528169829653E-20,"d":"1.65E-20"},1.62847199814322,-2.69198441899597,0.351719255069518,0.968963753804189]
["Solyc00g026907","SL3.0ch00",11445381,11447381,"-",351,4509,808,5128,7.222,13.612,6.3896376160527,{"v":1.54848629079311e-26,"d":"1.55E-26"},0,-3.91085760741443,1,1]
["Solyc00g027770","SL3.0ch00",11475330,11477330,"+",4360,3375,4555,3289,56.367,58.07,1.7027000656302,0.0173006582672454,-0.269609051961755,6.00804120453292,0.317448054488868,0.922528600337815]
["Solyc00g028550","SL3.0ch00",11530930,11532930,"-",795,3462,1272,4390,18.675,22.466,3.7904365465503,{"v":4.17261324047479e-06,"d":"4.17E-06"},0,-3.91085760741443,1,1]
["Solyc00g028560","SL3.0ch00",11532006,11534006,"-",3168,7690,4202,9288,29.177,31.149,1.9723553095483,0.000623278315435817,0,-3.91085760741443,1,1]
["Solyc00g028760","SL3.0ch00",11537778,11539778,"+",7913,12865,9640,14891,38.084,39.297,1.2136658592469,0.00493545070645802,0,-3.91085760741443,1,1]
["Solyc00g029500","SL3.0ch00",11590266,11592266,"-",2887,5465,3455,6178,34.567,35.866,1.2997220700871,0.0343745872826876,0,-3.91085760741443,1,1]
["Solyc00g030820","SL3.0ch00",11677156,11679156,"-",3461,7266,5063,9397,32.264,35.014,2.7494516557733,{"v":5.13137974415515e-06,"d":"5.13E-06"},-1.27504574835814,-2.52453426152791,0.604617948268432,1]
["Solyc00g032030","SL3.0ch00",11739712,11741712,"-",2719,5491,3138,5828,33.118,34.999,1.8807360761714,0.00561774810723236,0,-3.91085760741443,1,1]
["Solyc00g032035","SL3.0ch00",11769366,11771366,"-",6062,7175,5045,5554,45.796,47.599,1.8029548800015,3.46280471728583E-3,0,-3.91085760741443,1,1]
["Solyc00g032940","SL3.0ch00",11793751,11795751,"+",3651,4490,3933,4523,44.847,46.511,1.6642825010514,0.0167959362948573,0,-3.91085760741443,1,1]
["Solyc00g040390","SL3.0ch00",12201979,12203979,"+",1418,2773,1876,2986,33.834,38.585,4.7505374045439,{"v":3.03241722338283E-6,"d":"3.03E-06"},0,-3.91085760741443,1,1]
["Solyc00g042640","SL3.0ch00",12320155,12322155,"+",502,971,1943,3205,34.08,37.743,3.6627041209526,0.00596910147279552,0,-3.67051068894729,1,1]
["Solyc00g042850","SL3.0ch00",12333955,12335955,"+",2406,4090,2630,4216,37.038,38.417,1.3784162914161,0.049313307237231,0,-3.87150960665568,1,1]
["Solyc00g042854","SL3.0ch00",12376717,12378717,"+",5168,7553,5735,7907,40.626,42.039,1.4135534562597,0.0110776282231392,0,-3.91085760741443,1,1]
["Solyc00g044755","SL3.0ch00",12523754,12525754,"-",3662,5190,5286,6267,41.369,45.754,4.3851674138665,{"v":6.30082208427505e-10,"d":"6.30E-10"},0,-3.91085760741443,1,1]
["Solyc00g046580","SL3.0ch00",12523754,12525754,"-",3662,5190,5286,6267,41.369,45.754,4.3851674138665,{"v":6.30082208427505e-10,"d":"6.30E-10"},0,-3.91085760741443,1,1]
["Solyc00g048515","SL3.0ch00",12620943,12622943,"+",149,260,301,377,36.43,44.395,7.9649623875774,6.42142612738111E-3,0,-3.91085760741443,1,1]
["Solyc00g052540","SL3.0ch00",12815691,12817691,"-",4777,8512,5564,8237,35.947,40.316,4.3688952819789,{"v":3.01403512614936e-13,"d":"3.01E-13"},0,-3.91085760741443,1,1]
["Solyc00g052545","SL3.0ch00",12827121,12829121,"+",146,138,532,250,51.408,68.031,16.622239832859,{"v":9.49960354729176e-07,"d":"9.50E-07"},0,-3.91085760741443,1,1]
["Solyc00g053440","SL3.0ch00",12855297,12857297,"+",342,7015,761,8488,4.649,8.228,3.5792825774596,{"v":3.73233169398738e-20,"d":"3.73E-20"},0.00832595680136293,6.45674876136853,0.985495032545101,1]
["Solyc00g057280","SL3.0ch00",13036904,13038904,"-",1311,5176,1898,6727,20.21,22.006,1.7961470320798,0.00454153531129832,0,-3.91085760741443,1,1]
["Solyc00g057880","SL3.0ch00",13059178,13061178,"+",4733,8593,7501,11390,35.517,39.707,4.1897042897176,{"v":5.08178170615631e-14,"d":"5.08E-14"},-0.168343552980202,2.5364340037737,0.732336869701422,1]
["Solyc00g058900","SL3.0ch00",13110917,13112917,"-",48,483,173,568,9.04,23.347,14.307280587388,{"v":1.57200920450136e-11,"d":"1.57E-11"},0,-3.91085760741443,1,1]
["Solyc00g059500","SL3.0ch00",13133839,13135839,"+",1295,6914,1756,7915,15.775,18.157,2.3820092292357,{"v":2.24441826800714e-05,"d":"2.24E-05"},0.979660684558014,1.15725779970808,0.106288457885773,0.508116220483606]
["Solyc00g066150","SL3.0ch00",13435324,13437324,"-",4954,7058,6427,8514,41.242,43.016,1.7737711499843,0.00219343394083424,0,-3.91085760741443,1,1]
["Solyc00g066350","SL3.0ch00",13437927,13439927,"+",3804,9089,5135,10323,29.504,33.219,3.7146629317008,{"v":3.57857615051212e-11,"d":"3.58E-11"},0,-3.91085760741443,1,1]
["Solyc00g066155","SL3.0ch00",13437927,13439927,"+",3804,9089,5135,10323,29.504,33.219,3.7146629317008,{"v":3.57857615051212e-11,"d":"3.58E-11"},0,-3.91085760741443,1,1]
["Solyc01g058600","SL3.0ch00",13582322,13584322,"+",1744,3126,2306,3312,35.811,41.047,5.2355475177689,{"v":4.95699458790624e-08,"d":"4.96E-08"},0,-3.91085760741443,1,1]
["Solyc00g069887","SL3.0ch00",13629190,13631190,"+",6066,6780,9864,8656,47.221,53.261,6.0404142913779,{"v":3.55888472488263e-25,"d":"3.56E-25"},0,-3.91085760741443,1,1]
["Solyc00g071180","SL3.0ch00",13651920,13653920,"-",6315,11877,8089,14424,34.713,35.93,1.217290666536,0.00641585259700425,-0.0798587667667572,-0.604256039558963,1,1]
["Solyc00g073900","SL3.0ch00",13761621,13763621,"+",2135,10588,2693,11699,16.781,18.712,1.931150826236,{"v":2.85823829107633E-5,"d":"2.86E-05"},0,-3.91085760741443,1,1]
["Solyc00g074210","SL3.0ch00",13775616,13777616,"+",4037,7689,4883,8697,34.428,35.957,1.5295227779512,0.00659159338810106,0,-3.91085760741443,1,1]
["Solyc00g075035","SL3.0ch00",13829621,13831621,"-",2133,5411,2726,5509,28.274,33.103,4.8284856749732,{"v":8.84883092261561E-11,"d":"8.85E-11"},0,-3.91085760741443,1,1]
["Solyc00g082150","SL3.0ch00",14108114,14110114,"-",108,414,215,643,20.69,25.058,4.3686198858613,0.0330385557537081,-0.00687250989327655,6.23001419412898,0.979995481799025,1]
["Solyc00g084870","SL3.0ch00",14214156,14216156,"+",5,223,81,287,2.193,22.011,19.817887109077,{"v":3.71608647457952E-13,"d":"3.72E-13"},0,-3.91085760741443,1,1]
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["Solyc12g100220","SL3.0ch12",68000736,68002736,"+",1,125,82,639,0.794,11.373,10.57944213284,{"v":2.33614513105764E-5,"d":"2.34E-05"},4.50070504033638,-3.57601201221185,0.118197768607445,0.538394291357569]
["Solyc12g100230","SL3.0ch12",68002998,68004998,"+",14,699,65,1537,1.964,4.057,2.0938938528802,0.00541808377599343,7.43152288565194,-0.988849866030116,0.00597061193459042,0.0739718904317389]
["Solyc12g100250","SL3.0ch12",68014918,68016918,"-",1973,7293,2389,7570,21.293,23.988,2.6954534745056,{"v":8.1703301200539e-06,"d":"8.17E-06"},7.21382317250448,4.07417047509829,2.45855971956104E-3,0.0399354060169206]
["Solyc12g100290","SL3.0ch12",68029572,68031572,"+",10,414,125,1150,2.358,9.804,7.4454310025897,{"v":8.91935618936376e-08,"d":"8.92E-08"},0.0227045429274806,0.955223195913,0.983964547206256,1]
["Solyc12g100310","SL3.0ch12",68065572,68067572,"-",3904,6906,4164,6872,36.115,37.731,1.6163533758327,0.00779702531919173,0.294473150773944,5.72997225902678,0.337819756665695,0.951381048783523]
["Solyc12g100320","SL3.0ch12",68069678,68071678,"-",349,3179,615,4892,9.892,11.168,1.2753146171004,0.0297118537581691,0.0292815572923499,4.36975612256774,0.923165201036067,1]
["Solyc12g100340","SL3.0ch12",68086246,68088246,"-",5964,9610,8077,10468,38.295,43.554,5.2589249152318,{"v":3.52748928979432e-22,"d":"3.53E-22"},0,-3.91085760741443,1,1]
["Solyc12g100350","SL3.0ch12",68089938,68091938,"+",7719,7454,9255,7472,50.873,55.33,4.4564447477171,{"v":4.05661264753816e-15,"d":"4.06E-15"},2.06140478620785,-0.782669363899267,0.0642736811343032,0.376135639203494]