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{"sheet":"Sheet1","index":0,"n_rows":12,"n_cols":10,"rows_kept":12,"cut":false,"hidden":true,"merged":[[0,0,0,9]]}
["2020年暑期天外村校区研究生住宿统计表"]
["序号","年级","专业","学号","姓名","联系电话","导师单位","导师姓名","导师联系方式","备注"]
[1,"2018级","病原生物学",2018016,"高云云",17660262320,"基础医学院","赵英会",13605383576]
[2,"2019级","病原生物学",2019013,"刘文文",18815380582,"基础医学院","赵英会",13605383576]
[3,"2019级","病原生物学",2019015,"孙方园",19963506186,"基础医学院","李晓霞",13605388071]
[4]
[5]
[6]
[7]
[8]
[9]
[10]

{"sheet":"Table S1","index":1,"n_rows":226,"n_cols":4,"rows_kept":226,"cut":false,"hidden":true,"merged":[]}
["Table S1. Repeat annotation in Haemaphysalis longicornis."]
[]
["Class","Copies","Length (bp)","Percentage of the genome (bp)"]
[]
["ARTEFACT",6,321,0]
["DNA"]
["    Academ-1",399,18299,0]
["    Academ-2",18,786,0]
["    Academ-H",12,721,0]
["    CMC",1,60,0]
["    CMC-Chapaev",502,17879,0]
["    CMC-Chapaev-3",127,5166,0]
["    CMC-EnSpm",27785,5893485,1.9E-3]
["    CMC-Mirage",7,366,0]
["    CMC-Transib",409,16230,0]
["    Crypton",632,20821,0]
["    Crypton-A",115,4109,0]
["    Crypton-C",18,1112,0]
["    Crypton-F",57,2488,0]
["    Crypton-H",1256,51856,0]
["    Crypton-I",3,119,0]
["    Crypton-R",1,45,0]
["    Crypton-S",9107,1938271,5.9999999999999995E-4]
["    Crypton-V",782,31118,0]
["    Crypton-X",6,522,0]
["    Dada",1175,65706,0]
["    Ginger-1",2900,148126,0]
["    Ginger-2",142,8888,0]
["    IS3EU",713,32499,0]
["    Kolobok",75,2735,0]
["    Kolobok-E",61,7183,0]
["    Kolobok-H",4,187,0]
["    Kolobok-Hydra",3904,2484890,8.0000000000000004E-4]
["    Kolobok-T2",2697,145924,0]
["    MULE",1814,699829,2.0000000000000001E-4]
["    MULE-F",22,1196,0]
["    MULE-MuDR",12462,2302972,6.9999999999999999E-4]
["    MULE-NOF",308,12925,0]
["    MULE-Ricksha",3,271,0]
["    Maverick",9566,1199860,4.0000000000000002E-4]
["    Maverick-Mavirus",7,285,0]
["    Merlin",308,10495,0]
["    Novosib",1982,186563,1E-4]
["    P",16896,7005235,2.2000000000000001E-3]
["    P-Fungi",32,1724,0]
["    PIF",1,40,0]
["    PIF-HarbS",26,1383,0]
["    PIF-Harbinger",12012,2736371,8.9999999999999998E-4]
["    PIF-ISL2EU",11569,5272470,1.6999999999999999E-3]
["    PIF-Spy",1351,59675,0]
["    PiggyBac",8978,1474476,5.0000000000000001E-4]
["    PiggyBac-A",2,83,0]
["    PiggyBac-X",89,4591,0]
["    Sola",2,408,0]
["    Sola-1",1885,98932,0]
["    Sola-2",4207,2365768,8.0000000000000004E-4]
["    Sola-3",1495,189758,1E-4]
["    TcMar",2267,211603,1E-4]
["    TcMar-Ant1",22,1281,0]
["    TcMar-Cweed",18,999,0]
["    TcMar-Fot1",2696,777305,2.0000000000000001E-4]
["    TcMar-Gizmo",4,134,0]
["    TcMar-IS885",5,216,0]
["    TcMar-ISRm11",402,18791,0]
["    TcMar-Mariner",2207,385259,1E-4]
["    TcMar-Mogwai",2,157,0]
["    TcMar-Pogo",22414,6495943,2.0999999999999999E-3]
["    TcMar-Sagan",43,2459,0]
["    TcMar-Stowaway",271,10953,0]
["    TcMar-Tc1",13426,2060938,6.9999999999999999E-4]
["    TcMar-Tc2",14624,2986616,1E-3]
["    TcMar-Tc4",2426,359010,1E-4]
["    TcMar-Tigger",21989,7662074,2.5000000000000001E-3]
["    TcMar-m44",2872,2548454,8.0000000000000004E-4]
["    Zator",42,2340,0]
["    Zisupton",6568,1300839,4.0000000000000002E-4]
["    hAT",737,28093,0]
["    hAT-Ac",19807,4253474,1.4E-3]
["    hAT-Blackjack",9187,2976612,1E-3]
["    hAT-Charlie",25630,5562833,1.8E-3]
["    hAT-Pegasus",339,21545,0]
["    hAT-Restless",19,550,0]
["    hAT-Tag1",2465,197238,1E-4]
["    hAT-Tip100",16338,5176230,1.6999999999999999E-3]
["    hAT-hAT1",4,145,0]
["    hAT-hAT19",8495,3565573,1.1000000000000001E-3]
["    hAT-hAT5",656,292781,1E-4]
["    hAT-hAT6",28,957,0]
["    hAT-hATm",290,11001,0]
["    hAT-hATw",273,28107,0]
["    hAT-hATx",34,1558,0]
["    hAT-hobo",98,9089,0]
["    -",26266,10555906,3.3999999999999998E-3]
["LINE"]
["    CR1",130692,74994742,2.41E-2]
["    CR1-Zenon",4073,678701,2.0000000000000001E-4]
["    CRE",1033,381610,1E-4]
["    CRE-Ambal",42,2294,0]
["    CRE-Odin",65,3276,0]
["    Deceiver",9,497,0]
["    Dong-R4",1357,719711,2.0000000000000001E-4]
["    Dualen",29,1456,0]
["    I",219573,187872037,6.0299999999999999E-2]
["    I-Jockey",28004,13655785,4.4000000000000003E-3]
["    L1",33293,10573907,3.3999999999999998E-3]
["    L1-DRE",30,1433,0]
["    L1-Tx1",24796,19560924,6.3E-3]
["    L1-Zorro",6,351,0]
["    L2",139589,57075470,1.83E-2]
["    Penelope",100381,40920245,1.3100000000000001E-2]
["    Proto1",21,1014,0]
["    Proto2",58,3188,0]
["    R1",17585,9048704,2.8999999999999998E-3]
["    R1-LOA",4517,1983613,5.9999999999999995E-4]
["    R2",1325,215137,1E-4]
["    R2-Hero",2103,349297,1E-4]
["    R2-NeSL",1532,620866,2.0000000000000001E-4]
["    RTE",3,235,0]
["    RTE-BovB",4038,981648,2.9999999999999997E-4]
["    RTE-ORTE",34,1420,0]
["    RTE-RTE",193305,89402130,2.87E-2]
["    RTE-X",21186,17057849,5.4999999999999997E-3]
["    Rex-Babar",499,22459,0]
["    Tad1",8692,3351286,1.1000000000000001E-3]
["    -",103026,37896980,1.2200000000000001E-2]
["LTR"]
["    Caulimovirus",10114,1060321,2.9999999999999997E-4]
["    Copia",34224,6524392,2.0999999999999999E-3]
["    DIRS",5152,1348393,4.0000000000000002E-4]
["    DIRS-Q",1019,188587,1E-4]
["    ERV",10,452,0]
["    ERV-Foamy",11,560,0]
["    ERV-Lenti",5,248,0]
["    ERV1",5659,518896,2.0000000000000001E-4]
["    ERV4",164,7736,0]
["    ERVK",2312,100232,0]
["    ERVL",339,16303,0]
["    ERVL-MaLR",23,1306,0]
["    Gypsy",678190,372454595,0.1195]
["    Ngaro",1548,82999,0]
["    Pao",70860,30999034,9.9000000000000008E-3]
["    TRIM",1,35,0]
["    Unknown",467753,147277650,4.7199999999999999E-2]
["    Viper",4,241,0]
["    -",44396,8408830,2.7000000000000001E-3]
["Other"]
["    DNA_virus",15,395,0]
["    -",1,43,0]
["RC"]
["    Helitron",67431,22268468,7.1000000000000004E-3]
["    Helitron-2",4501,1813611,5.9999999999999995E-4]
["Retroposon"]
["    I-derived",15,411,0]
["    L1-dep",4,142,0]
["    L1-derived",11,446,0]
["    L2-derived",2,83,0]
["    RTE-derived",1,42,0]
["    SVA",7,517,0]
["    -",28,1078,0]
["SINE"]
["    5S-Deu-L2",10,469,0]
["    5S-RTE",1,0,0]
["    5S-Sauria-RTE",3,93,0]
["    7SL",27,6061,0]
["    Alu",2,166,0]
["    B2",7,272,0]
["    B4",185,4599,0]
["    Ceph",1,60,0]
["    Core-RTE",1,82,0]
["    ID",764,167026,1E-4]
["    MIR",75,3166,0]
["    RTE-BovB",1,51,0]
["    U",36,1526,0]
["    tRNA",257114,61361232,1.9699999999999999E-2]
["    tRNA-5S",1,47,0]
["    tRNA-7SL",17,463,0]
["    tRNA-CR1",4,147,0]
["    tRNA-Ceph",1,34,0]
["    tRNA-Ceph-RTE",35,1988,0]
["    tRNA-Core",110,3879,0]
["    tRNA-Core-RTE",9,311,0]
["    tRNA-Deu",438,477363,2.0000000000000001E-4]
["    tRNA-Deu-CR1",1,11,0]
["    tRNA-Deu-I",98,4866,0]
["    tRNA-Deu-L2",16,597,0]
["    tRNA-Deu-RTE",16,750,0]
["    tRNA-I",35,914,0]
["    tRNA-Jockey",1,60,0]
["    tRNA-L1",2,56,0]
["    tRNA-L2",6239,1365817,4.0000000000000002E-4]
["    tRNA-Meta",1414,374409,1E-4]
["    tRNA-R2",1749,270721,1E-4]
["    tRNA-RTE",11733,2518907,8.0000000000000004E-4]
["    tRNA-Rex",3,133,0]
["    tRNA-Sauria",6,259,0]
["    tRNA-Sauria-L2",3,259,0]
["    tRNA-Tad1",1,45,0]
["    tRNA-V",14127,2119394,6.9999999999999999E-4]
["    tRNA-V-CR1",3971,611554,2.0000000000000001E-4]
["    tRNA-V-Core-L2",1,16,0]
["    tRNA-V-L2",3,224,0]
["    tRNA-V-RTE",4,232,0]
["    -",31,14225,0]
["Segmental",1,89,0]
["Unknown"]
["    centromeric",3,225,0]
["    -",2553825,653747524,0.2097]
[]
["total interspersed",5627716,1975546918,0.63370000000000004]
[]
["Low_complexity",23852,1180991,4.0000000000000002E-4]
["Satellite"]
["    Y-chromosome",5,234,0]
["    acro",152,9956,0]
["    centr",4,192,0]
["    macro",31,1629,0]
["    subtelo",3,150,0]
["    ",27103,11618036,3.7000000000000002E-3]
["Simple_repeat",443186,30782283,9.9000000000000008E-3]
["rRNA",1486,289406,1E-4]
["scRNA",3,156,0]
["snRNA",382,30525,0]
["srpRNA",7,1590,0]
["tRNA",8956,790977,2.9999999999999997E-4]
[]
["Total",6132886,2020253043,0.64810000000000001]

{"sheet":"Table S2","index":2,"n_rows":114,"n_cols":3,"rows_kept":114,"cut":false,"hidden":true,"merged":[]}
["Table S2. Summary statistics for non-coding RNAs in Haemaphysalis longicornis."]
[]
["rRNA"]
["5_8S_rRNA",7,"rRNA 5.8S ribosomal RNA "]
["5S_rRNA",68,"rRNA 5S ribosomal RNA "]
["LSU_rRNA_eukarya",94,"rRNA Eukaryotic large subunit ribosomal"]
["SSU_rRNA_eukarya",21,"rRNA Eukaryotic small subunit ribosomal"]
["SSU_rRNA_microsporidia",1,"rRNA Microsporidia small subunit ribosomal"]
[]
["lncRNA"]
["Sphinx_1",1,"lncRNA Sphinx conserved region 1"]
["Sphinx_2",1,"lncRNA Sphinx conserved region 2"]
[]
["sRNA"]
["Ms_IGR-7",7,"Actinobacteria sRNA Ms_IGR-7"]
["5_ureB_sRNA",1,"5' ureB small RNA"]
[]
["snRNA"]
["SNORD36",1,"snoRNA; CD-box; Small nucleolar RNA SNORD36"]
["SNORD49",2,"snoRNA; CD-box; Small nucleolar RNA SNORD49"]
["SNORD65",1,"snoRNA; CD-box; Small nucleolar RNA SNORD65"]
["snosnR60_Z15",2,"snoRNA; CD-box; Small nucleolar RNA snR60/Z15/Z230/Z193/J17"]
["snoU13",1,"snoRNA; CD-box; Small nucleolar RNA U13"]
["U3",12,"snoRNA; CD-box; Small nucleolar RNA U3"]
["snoU54",21,"snoRNA; CD-box; Small nucleolar RNA U54"]
["SNORA14",1,"snoRNA; HACA-box; Small nucleolar RNA SNORA14"]
["SNORA57",1,"snoRNA; HACA-box; Small nucleolar RNA SNORA57"]
["SNORA74",2,"snoRNA; HACA-box; Small nucleolar RNA SNORA74"]
["SNORA79",2,"snoRNA; HACA-box; Small nucleolar RNA SNORA79"]
["U1",539,"splicing; U1 spliceosomal RNA"]
["U11",2,"splicing; U11 spliceosomal RNA"]
["U12",1,"splicing; U12 minor spliceosomal RNA"]
["U2",87,"splicing; U2 spliceosomal RNA"]
["U4",36,"splicing; U4 spliceosomal RNA"]
["U4atac",1,"splicing; U4atac minor spliceosomal RNA"]
["U5",48,"splicing; U5 spliceosomal RNA"]
["U6",59,"splicing; U6 spliceosomal RNA"]
["U6atac",1,"splicing; U6atac minor spliceosomal RNA"]
[]
["miRNA"]
["let-7",1,"let-7 microRNA precursor"]
["mir-2",3,"mir-2 microRNA precursor"]
["lin-4",1,"lin-4 microRNA precursor"]
["mir-7",1,"mir-7 microRNA precursor"]
["mir-1",1,"mir-1 microRNA precursor family"]
["mir-10",8,"mir-10 microRNA precursor family"]
["mir-9",2,"mir-9/mir-79 microRNA precursor family"]
["mir-124",1,"mir-124 microRNA precursor family"]
["mir-8",2,"mir-8/mir-141/mir-200 microRNA precursor family"]
["mir-46",1,"mir-46/mir-47/mir-281 microRNA precursor family"]
["mir-219",2,"mir-219 microRNA precursor family"]
["mir-133",1,"mir-133 microRNA precursor family"]
["mir-214",2,"microRNA mir-214"]
["mir-33",1,"microRNA mir-33"]
["mir-190",2,"microRNA mir-190"]
["mir-186",1,"microRNA mir-186"]
["mir-315",1,"microRNA mir-315"]
["mir-iab-4",1,"microRNA mir-iab-4"]
["mir-191",1,"microRNA mir-191"]
["mir-286",2,"microRNA mir-286"]
["mir-74",1,"microRNA mir-74"]
["mir-71",1,"microRNA mir-71"]
["mir-252",1,"microRNA mir-252"]
["mir-67",1,"microRNA mir-67"]
["MIR158",2,"microRNA MIR158"]
["mir-233",6,"microRNA mir-233"]
["MIR811",5,"microRNA MIR811"]
["MIR821",6,"microRNA MIR821"]
["mir-242",1,"microRNA mir-242"]
["MIR1122",2,"microRNA MIR1122"]
["mir-598",2,"microRNA mir-598"]
["MIR1846",1,"microRNA MIR1846"]
["mir-2973",1,"mir-2973 microRNA precursor"]
[]
["ribozyme"]
["Cobalamin",2,"Cobalamin riboswitch"]
[]
["ribozyme"]
["RNase_MRP",1,"ribozyme RNase MRP  "]
[]
["tRNA"]
["Ala",230]
["Arg",111]
["Asn",103]
["Asp",339]
["Cys",47]
["Gln",215]
["Glu",333]
["Gly",258]
["His",83]
["Ile",235]
["iMet",178]
["Leu",499]
["Lys",163]
["Met",173]
["Phe",163]
["Pro",232]
["SeC",2]
["Ser",341]
["Thr",45]
["Trp",88]
["Tyr",65]
["Val",368]
[]
["Other"]
["Arthropod_7SK",1,"Arthropod 7SK RNA"]
["Histone3",198,"Histone 3' UTR stem-loop"]
["IBV_D-RNA",1,"Infectious bronchitis virus D-RNA"]
["IRE_I",3,"Iron response element I"]
["IRE_II",2,"Iron response element II"]
["K_chan_RES",4,"Potassium channel RNA editing signal"]
["Metazoa_SRP",24,"Metazoan signal recognition particle RNA"]
["SECIS_1",1,"Selenocysteine insertion sequence 1"]
["VA",7,"VA RNA"]

{"sheet":"Table S3","index":3,"n_rows":49,"n_cols":10,"rows_kept":49,"cut":false,"hidden":false,"merged":[]}
["Table S3. Summary statistics for gene family inference."]
["Explanations for some terms."]
["G50: The number of genes in the orthogroup such that 50% of genes are in orthogroups of that size or larger"]
["O50: The smallest number of orthogroups such that 50% of genes are in orthogroups of that size or larger."]
["Single-copy orthogroup: An orthogroup with exactly one gene (and no more) from each species. "]
[]
["Number of species",9]
["Number of genes",184459]
["Number of genes in orthogroups",162773]
["Number of unassigned genes",21686]
["Percentage of genes in orthogroups",88.2]
["Percentage of unassigned genes",11.8]
["Number of orthogroups",18611]
["Number of species-specific orthogroups",6076]
["Number of genes in species-specific orthogroups",32099]
["Percentage of genes in species-specific orthogroups",17.399999999999999]
["Mean orthogroup size",8.6999999999999993]
["Median orthogroup size",6]
["G50 (assigned genes)",12]
["G50 (all genes)",11]
["O50 (assigned genes)",3326]
["O50 (all genes)",4258]
["Number of orthogroups with all species present",3482]
["Number of single-copy orthogroups",470]
[]
[]
[null,"Centruroides_sculpturatus","Dermatophagoides_pteronyssinus","Galendromus_occidentalis","Haemaphysalis_longicornis","Ixodes_scapularis","Stegodyphus_mimosarum","Tachypleus_tridentatus","Tetranychus_urticae","Varroa_destructor"]
["Number of genes",25955,11872,11578,20903,25604,26750,33730,12624,15443]
["Number of genes in orthogroups",23927,9748,10864,19211,24470,19188,29372,11551,14442]
["Number of unassigned genes",2028,2124,714,1692,1134,7562,4358,1073,1001]
["Percentage of genes in orthogroups",92.2,82.1,93.8,91.9,95.6,71.7,87.1,91.5,93.5]
["Percentage of unassigned genes",7.8,17.899999999999999,6.2,8.1,4.4000000000000004,28.3,12.9,8.5,6.5]
["Number of orthogroups containing species",9993,6530,7810,9639,10325,9355,8585,6527,8021]
["Percentage of orthogroups containing species",53.7,35.1,42,51.8,55.5,50.3,46.1,35.1,43.1]
["Number of species-specific orthogroups",1037,474,160,850,1063,582,1023,460,427]
["Number of genes in species-specific orthogroups",5202,1789,687,4008,6704,3780,5989,2779,1161]
["Percentage of genes in species-specific orthogroups",20,15.1,5.9,19.2,26.2,14.1,17.8,22,7.5]
[]
[]
["Species","Single-copy orthologs","Multi-copy orthologs","Common genes unique to Parasitiformes","Species-specific genes","Other orthologs","Unassigned genes"]
["Centruroides_sculpturatus",470,6983,0,5202,11272,2028]
["Dermatophagoides_pteronyssinus",470,4189,0,1789,3300,2124]
["Galendromus_occidentalis",470,4089,226,687,5392,714]
["Haemaphysalis_longicornis",470,5119,288,4008,9326,1692]
["Ixodes_scapularis",470,5792,307,6704,11197,1134]
["Stegodyphus_mimosarum",470,5596,0,3780,9342,7562]
["Tachypleus_tridentatus",470,7140,0,5989,15773,4358]
["Tetranychus_urticae",470,4703,0,2779,3599,1073]
["Varroa_destructor",470,5887,254,1161,6670,1001]