5k-vConTACT Accuracy Precision Recall F1_score 10k-vConTACT Accuracy Precision Recall F1_score 20k-vConTACT Accuracy Precision Recall F1_score 30k-vConTACT Accuracy Precision Recall F1_score Phylum 0.739963726 0.992841794 0.743932608 0.85055075 Phylum 0.830272224 0.994453013 0.83413527 0.907266376 Phylum 0.876839049 0.988681758 0.885729907 0.934378523 Phylum 0.882296879 0.989577766 0.890572391 0.937468354 Class 0.739963726 0.992841794 0.743932608 0.85055075 Class 0.830272224 0.994453013 0.83413527 0.907266376 Class 0.876445407 0.988237905 0.885684451 0.934154976 Class 0.881661504 0.988865135 0.890502166 0.937109573 Order 0.604361338 0.81089812 0.703512563 0.753398033 Order 0.663029482 0.794139135 0.80063835 0.797375499 Order 0.680263741 0.767032845 0.857417514 0.809710671 Order 0.691366849 0.775432033 0.864448858 0.817524418 Family 0.60391587 0.810300417 0.703358739 0.753051805 Family 0.662758387 0.793814433 0.800573066 0.797179424 Family 0.679132018 0.765756769 0.857213838 0.808908425 Family 0.68961957 0.773472296 0.86415207 0.816301589 Genus 0.400464559 0.537320867 0.611241521 0.571902454 Genus 0.400497007 0.479692616 0.708100336 0.571935541 Genus 0.368941593 0.416000888 0.765336327 0.539017289 Genus 0.364387261 0.408694103 0.770703847 0.53414052 1k-CAT Accuracy Precision Recall F1_score 5k-CAT Accuracy Precision Recall F1_score 10k-CAT Accuracy Precision Recall F1_score 20k-CAT Accuracy Precision Recall F1_score 30k-CAT Accuracy Precision Recall F1_score Phylum 0.691905393 0.991674091 0.695948231 0.817900807 Phylum 0.705200323 0.992357895 0.709050979 0.827117276 Phylum 0.700723617 0.994049782 0.703675123 0.824029972 Phylum 0.694385518 0.994229017 0.697195598 0.819631083 Phylum 0.696434713 0.994108984 0.699320824 0.8210569 Class 0.691761295 0.991467563 0.695904156 0.81780012 Class 0.705155441 0.992294737 0.709037848 0.827086404 Class 0.700723617 0.994049782 0.703675123 0.824029972 Class 0.694385518 0.994229017 0.697195598 0.819631083 Class 0.696434713 0.994108984 0.699320824 0.8210569 Order 0.686011522 0.983226695 0.694134969 0.813768486 Order 0.703434966 0.989873684 0.708533627 0.825901757 Order 0.698738473 0.991233648 0.703083218 0.822655735 Order 0.692334889 0.991292903 0.696570859 0.818200811 Order 0.693912645 0.990508918 0.698557415 0.81930157 Family 0.639877715 0.91710537 0.679158032 0.780396866 Family 0.655112055 0.921873684 0.6936212 0.791622601 Family 0.649334016 0.921148256 0.687550854 0.787389346 Family 0.641917692 0.919104991 0.680356741 0.781912145 Family 0.640605296 0.914416626 0.681463415 0.78093774 Genus 0.515332258 0.73860047 0.630285061 0.680157444 Genus 0.531955956 0.748568421 0.647680286 0.694479438 Genus 0.523085297 0.742051235 0.639337847 0.686875907 Genus 0.51824353 0.742026931 0.632137312 0.682688277 Genus 0.521380259 0.744231713 0.635195531 0.685404265 1k-VPF Accuracy Precision Recall F1_score 5k-VPF Accuracy Precision Recall F1_score 10k-VPF Accuracy Precision Recall F1_score 20k-VPF Accuracy Precision Recall F1_score 30k-VPF Accuracy Precision Recall F1_score Phylum 0.538266068 0.879773948 0.581002949 0.699834806 Phylum 0.829261983 0.921992809 0.891834423 0.906662895 Phylum 0.81507801 0.843335387 0.96051462 0.898118985 Phylum 0.857467051 0.866466749 0.988031781 0.923264884 Phylum 0.86123723 0.863196815 0.997371015 0.925445952 Class 0.536676132 0.877175264 0.580282642 0.698489579 Class 0.828245685 0.920862866 0.891716071 0.906055124 Class 0.81507801 0.843335387 0.96051462 0.898118985 Class 0.857467051 0.866466749 0.988031781 0.923264884 Class 0.86123723 0.863196815 0.997371015 0.925445952 Order 0.535172984 0.874718429 0.579599371 0.697215218 Order 0.826896781 0.919363123 0.891558584 0.905247401 Order 0.81507801 0.843335387 0.96051462 0.898118985 Order 0.857467051 0.866466749 0.988031781 0.923264884 Order 0.86123723 0.863196815 0.997371015 0.925445952 Family 0.33971159 0.555244747 0.466708318 0.507141376 Family 0.563269153 0.626255778 0.848494127 0.72062978 Family 0.638373893 0.660505237 0.950129993 0.779277424 Family 0.700619708 0.707973188 0.985391603 0.823958119 Family 0.71906924 0.720705347 0.996852872 0.836579729 10k-PhaGCN Accuracy Precision Recall F1_score 20k-PhaGCN Accuracy Precision Recall F1_score 30k-PhaGCN Accuracy Precision Recall F1_score Phylum 0.331807121 0.975524805 0.334592535 0.498281043 Phylum 0.694385518 0.994229017 0.697195598 0.819631083 Phylum 0.412698413 0.825396825 0.452173913 0.584269663 Class 0.331807121 0.975524805 0.334592535 0.498281043 Class 0.694385518 0.994229017 0.697195598 0.819631083 Class 0.412151067 0.824302135 0.451845185 0.58372093 Order 0.3314229 0.97439518 0.334334625 0.497847678 Order 0.692334889 0.991292903 0.696570859 0.818200811 Order 0.410782704 0.821565408 0.451021635 0.582347236 Family 0.330622439 0.972041796 0.33379667 0.49694403 Family 0.641917692 0.919104991 0.680356741 0.781912145 Family 0.448139026 0.896278051 0.472651176 0.618917131 1k-geNomad Accuracy Precision Recall F1_score 5k-geNomad Accuracy Precision Recall F1_score 10k-geNomad Accuracy Precision Recall F1_score 20k-geNomad Accuracy Precision Recall F1_score 30k-geNomad Accuracy Precision Recall F1_score Phylum 0.992276407 0.992833249 0.999435092 0.996123232 Phylum 0.987185077 0.98862178 0.99853006 0.993551218 Phylum 0.985541173 0.985541173 1 0.992717942 Phylum 0.985541173 0.98749931 0.997992024 0.992717942 Phylum 0.985591295 0.989020878 0.996493985 0.992743368 Class 0.990565624 0.991121506 0.999434117 0.995260455 Class 0.983816205 0.985248006 0.998525034 0.991842089 Class 0.981933352 0.981933352 1 0.990884331 Class 0.981933352 0.98388432 0.997984661 0.990884331 Class 0.981585555 0.9850012 0.996479728 0.990707217 Order 0.690736702 0.691124327 0.999188683 0.817083702 Order 0.685334179 0.686331582 0.997884005 0.813291735 Order 0.668273203 0.668273203 1 0.801155592 Order 0.668190581 0.669518185 0.997041177 0.801096216 Order 0.654370441 0.656647468 0.99472871 0.791080915 Family 0.538755828 0.539058165 0.998960052 0.700248627 Family 0.541820248 0.542608788 0.997325033 0.702831927 Family 0.5283393 0.5283393 1 0.69139006 Family 0.52831176 0.529361444 0.996260712 0.691366479 Family 0.521403802 0.523218143 0.993393325 0.685424608 1k-VITAP Accuracy Precision Recall F1_score 5k-VITAP Accuracy Precision Recall F1_score 10k-VITAP Accuracy Precision Recall F1_score 20k-VITAP Accuracy Precision Recall F1_score 30k-VITAP Accuracy Precision Recall F1_score Phylum 0.980415425 0.999026577 0.981352901 0.990110875 Phylum 0.999396004 0.99996374 0.999432223 0.999697911 Phylum 0.999974339 1 0.999974339 0.999987169 Phylum 1 1 1 1 Phylum 1 1 1 1 Class 0.979872491 0.998473336 0.981342761 0.989833937 Class 0.999396004 0.99996374 0.999432223 0.999697911 Class 0.999974339 1 0.999974339 0.999987169 Class 1 1 1 1 Class 1 1 1 1 Order 0.888712238 0.905582595 0.979468276 0.941077439 Order 0.991157498 0.991720554 0.999427506 0.995559115 Order 0.993174237 0.993199723 0.999974164 0.996575431 Order 0.992061705 0.992061705 1 0.996015035 Order 0.992462312 0.992462312 1 0.996216898 Family 0.885839498 0.902655322 0.979403064 0.939464359 Family 0.9909159 0.991478818 0.999427367 0.995437225 Family 0.993045933 0.993071416 0.99997416 0.996510834 Family 0.991949105 0.991949105 1 0.995958283 Family 0.992462312 0.992462312 1 0.996216898 Genus 0.738385905 0.752402628 0.975391133 0.849507469 Genus 0.982459955 0.98301807 0.999422441 0.991152384 Genus 0.990377213 0.990402628 0.999974091 0.995165345 Genus 0.990091206 0.990091206 1 0.995020935 Genus 0.989949749 0.989949749 1 0.994949495