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{"sheet":"Sheet1","index":0,"n_rows":56,"n_cols":17,"rows_kept":56}
[{"$nulls":3},"Supplementary Table S1. Metadata of SARS-CoV-2 strains submitted to GISAID."]
["Virus name","Accession ID","Collection date","Location","Host","Additional location information","Sampling strategy","Gender","Patient age","Patient status","Last vaccinated","Passage","Specimen","Additional host information","Lineage","Clade","AA Substitutions"]
["hCoV-19/Bangladesh/NGRI-R2-11/2020","EPI_ISL_1626483","2020-07-26","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",30,"Hospitalized",null,"Original",null,null,"B.1.1.25","GR","(NSP6_K8N,N_R203K,NSP3_P1103S,N_G204R,NSP3_V325F,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP3_S148F)"]
["hCoV-19/Bangladesh/NGRI-R2-17/2020","EPI_ISL_1626484","2020-07-25","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",70,"Deceased",null,"Original",null,null,"B.1.1.25","GR","(NS7b_C41S,N_R203K,N_G204R,M_H125Y,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP3_S1424F)"]
["hCoV-19/Bangladesh/NGRI-R2-18/2020","EPI_ISL_1626485","2020-07-26","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",20,"Live",null,"Original",null,null,"B.1.36.16","GH","(Spike_S46L,NSP3_P74L,NS3_S166L,N_S194L,NS3_Q57H,NSP14_L493F,NSP3_L1870F,NSP12_P323L,NSP2_S263F,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-20/2020","EPI_ISL_1626486","2020-07-15","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",24,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP2_L462F,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP6_L37F)"]
["hCoV-19/Bangladesh/NGRI-R2-22/2020","EPI_ISL_1626487","2020-07-19","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",4,"Live",null,"Original",null,null,"B.1.1.25","GR","(N_G238C,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-24/2020","EPI_ISL_1626488","2020-09-10","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",31,"Live",null,"Original",null,null,"B.1.36.16","GH","(N_S194L,NS3_Q57H,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-25/2020","EPI_ISL_1626489","2020-07-20","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",21,"Live",null,"Original",null,null,"B.1.36.16","GH","(NSP2_L451F,NSP13_P238S,N_S194L,NSP8_P10S,NS3_Q57H,NSP12_P323L,NSP3_A256V,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-26/2020","EPI_ISL_1626490","2020-09-09","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",30,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP3_S794L,NSP2_A510V,N_R203K,NSP6_I199V,N_G204R,NSP13_A296S,NSP2_I120F,NS6_R20S,NSP12_P323L,Spike_D614G,NSP14_A281S)"]
["hCoV-19/Bangladesh/NGRI-R2-27/2020","EPI_ISL_1626491","2020-07-09","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",58,"Live",null,"Original",null,null,"B.1.1.25","GR","(NS7a_E92stop,NSP14_A323S,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-4/2020","EPI_ISL_1626492","2020-07-28","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",34,"Hospitalized",null,"Original",null,null,"B.1.1.25","GR","(Spike_H245Y,NS7a_V82del,NS3_N119Y,N_R203K,NS7a_S81del,NSP4_I91V,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-O25/2020","EPI_ISL_1626493","2020-09-10","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",15,"Live",null,"Original",null,null,"D.2","GR","(NSP2_Q427R,N_R203K,NSP5_P132S,N_G204R,NSP14_V263I,NSP12_F77L,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-O7/2020","EPI_ISL_1626494","2020-08-11","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",18,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP3_T1465I,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-O9/2020","EPI_ISL_1626495","2020-08-11","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",26,"Live",null,"Original",null,null,"B.1.36.16","GH","(N_R203S,NSP10_D82N,NSP2_T332I,N_S194L,NS3_Q57H,E_L19F,NSP4_K165N,NSP12_P323L,Spike_A262S,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R3-10/2020","EPI_ISL_1626496","2020-07-18","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",52,"Live",null,"Original",null,null,"B.1.1.25","GR","(N_R203K,NSP2_G438V,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,N_A211T)"]
["hCoV-19/Bangladesh/NGRI-R3-11/2020","EPI_ISL_1626497","2020-07-18","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",52,"Hospitalized",null,"Original",null,null,"B.1.1.25","GR","(N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,N_A211T)"]
["hCoV-19/Bangladesh/NGRI-R3-12/2020","EPI_ISL_1626498","2020-07-18","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",31,"Live",null,"Original",null,null,"B.1.1.25","GR","(Spike_E654V,N_R203K,N_G204R,NSP2_I120F,NSP8_A27T,NSP12_P323L,Spike_D614G,Spike_A684S)"]
["hCoV-19/Bangladesh/NGRI-R3-14/2020","EPI_ISL_1626499","2020-10-23","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",69,"Live",null,"Original",null,null,"B.1.1.25","GR","(Spike_C1247S,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R3-15/2020","EPI_ISL_1626500","2020-10-24","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",30,"Live",null,"Original",null,null,"B.1.1.25","GR","(Spike_C1247S,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R3-16/2020","EPI_ISL_1626501","2020-10-25","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male","unknown","Live",null,"Original",null,null,"B.1.36.8","GH","(N_S194L,NS3_Q57H,Spike_Y204F,NSP12_P323L,Spike_D614G,NSP2_S122F)"]
["hCoV-19/Bangladesh/NGRI-R3-17/2020","EPI_ISL_1626502","2020-10-26","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",22,"Hospitalized",null,"Original",null,null,"B.1.36.16","GH","(NSP3_P74L,N_M210I,N_S194L,NSP2_R370C,NS3_Q57H,NSP12_P323L,NSP2_S263F,Spike_D614G,NSP3_L1259R)"]
["hCoV-19/Bangladesh/NGRI-R3-2/2020","EPI_ISL_1626503","2020-07-19","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",34,"Hospitalized",null,"Original",null,null,"B.1.36.8","GH","(Spike_K1191N,NS3_L52F,N_S194L,NS3_Q57H,NSP8_Q73H,NSP12_P323L,NSP6_R5G,Spike_D614G,NSP3_L373M)"]
["hCoV-19/Bangladesh/NGRI-R3-3/2020","EPI_ISL_1626504","2020-07-19","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",18,"Live",null,"Original",null,null,"B.1.36.8","GH","(Spike_K1191N,NS3_L52F,N_S194L,NS3_Q57H,NSP8_Q73H,NSP12_P323L,NSP6_R5G,Spike_D614G,NSP3_L373M)"]
["hCoV-19/Bangladesh/NGRI-R3-5/2020","EPI_ISL_1626505","2020-07-19","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",40,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP6_K8N,N_R203K,NSP12_K91R,NSP3_P1103S,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP6_V213F,NSP3_S148F)"]
["hCoV-19/Bangladesh/NGRI-R3-6/2020","EPI_ISL_1626506","2020-07-19","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",35,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP6_K8N,N_R203K,NSP3_P1103S,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP3_S148F)"]
["hCoV-19/Bangladesh/NGRI-R3-7/2020","EPI_ISL_1626507","2020-07-19","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",40,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP6_K8N,N_R203K,NSP3_P1103S,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP3_S148F)"]
["hCoV-19/Bangladesh/NGRI-R3-9/2020","EPI_ISL_1626508","2020-07-18","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",35,"Live",null,"Original",null,null,"B.1.36.16","GH","(N_S194L,NS3_Q57H,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R3-O1/2020","EPI_ISL_1626509","2020-08-11","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",34,"Live",null,"Original",null,null,"B.1.36.8","GH","(NSP3_K1943N,N_S194L,NS3_Q57H,NSP13_V348L,NSP12_P323L,Spike_D614G,NSP13_R248K,NSP13_L526F,Spike_D80Y)"]
["hCoV-19/Bangladesh/NGRI-R3-O11/2020","EPI_ISL_1626510","2020-08-13","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",20,"Hospitalized",null,"Original",null,null,"B.1.1.25","GR","(NS7b_C12Y,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP6_L37F,NSP3_A534V)"]
["hCoV-19/Bangladesh/NGRI-R3-O15/2020","EPI_ISL_1626511","2020-08-12","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",30,"Live",null,"Original",null,null,"B.1.1.25","GR","(N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,Spike_S1252F,NSP3_E595V)"]
["hCoV-19/Bangladesh/NGRI-R3-O5/2020","EPI_ISL_1626512","2020-08-12","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",38,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP2_S369F,NSP2_T434I,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP5_I78V,NSP3_D1481H,Spike_C1247F,NSP3_A534V)"]
["hCoV-19/Bangladesh/NGRI-R3-O6/2020","EPI_ISL_1626513","2020-08-11","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",58,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP3_T1465I,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-1/2020","EPI_ISL_1626514","2020-11-15","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",39,"Live",null,"Original",null,null,"B.1.36.8","GH","(NSP2_R107S,N_S194L,NSP3_V477F,NS3_Q57H,NSP3_A991V,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-2/2020","EPI_ISL_1626515","2020-11-16","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",35,"Live",null,"Original",null,null,"B.1","GH","(N_S194L,NS3_Q57H,NSP3_Q974H,NSP3_S1197I,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-3/2020","EPI_ISL_1626516","2020-11-19","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",55,"Live",null,"Original",null,null,"B.1.1.25","GR","(N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-6/2020","EPI_ISL_1626517","2020-11-16","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",47,"Live",null,"Original",null,null,"B.1.36.16","GH","(N_S194L,NS3_Q57H,NSP1_E37D,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-O17/2020","EPI_ISL_1626518","2020-08-12","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",36,"Live",null,"Original",null,null,"B.1.1.25","GR","(M_D209Y,Spike_R21K,Spike_Q1201H,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP6_V149F)"]
["hCoV-19/Bangladesh/NGRI-R4-O24/2020","EPI_ISL_1626519","2020-09-10","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Female",31,"Live",null,"Original",null,null,"B.1.1.25","GR","(NSP15_R206S,NSP14_H26Y,N_R203K,N_G204R,NSP1_L92F,NSP3_V325F,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP2_A360V,NS3_S171L)"]
["hCoV-19/Bangladesh/NGRI-R4-O27/2020","EPI_ISL_1626520","2020-07-18","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",70,"Deceased",null,"Original",null,null,"D.2","GR","(NSP2_Q427R,N_R203K,N_G204R,NSP14_V263I,NSP2_I120F,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-OR18/2020","EPI_ISL_1626521","2020-10-27","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male","unknown","Hospitalized",null,"Original",null,null,"B.1.36.8","GH","(N_S194L,NS3_Q57H,Spike_Y204F,NSP12_P323L,Spike_D614G,NSP2_S122F)"]
["hCoV-19/Bangladesh/NGRI-R4-OR19/2020","EPI_ISL_1626522","2020-10-28","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male","unknown","Live",null,"Original",null,null,"B.1.36.16","GH","(N_D377Y,NSP3_S126P,N_S194L,NSP12_A581V,NS3_Q57H,NSP3_L1035F,NSP12_P323L,Spike_D614G,Spike_L54F)"]
["hCoV-19/Bangladesh/NGRI-R4-OR20/2020","EPI_ISL_1626523","2020-10-29","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",32,"Hospitalized",null,"Original",null,null,"B.1.1.25","GR","(NS3_Q17R,NSP13_S259L,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,NSP5_K90R,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-OR21/2020","EPI_ISL_1626524","2020-10-30","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",32,"Live",null,"Original",null,null,"B.1.36.16","GH","(NSP3_R1345C,NSP3_P74L,NSP12_T806I,N_S194L,NSP5_A129V,NS3_G187S,NSP3_V369I,NS3_Q57H,NSP12_P323L,NSP2_S263F,Spike_D614G,NSP2_A26T)"]
["hCoV-19/Bangladesh/NGRI-R4-OR22/2020","EPI_ISL_1626525","2020-10-31","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",33,"Hospitalized",null,"Original",null,null,"B.1.36.8","GH","(NS7a_P84T,NSP14_M315I,N_S194L,NS3_Q57H,NSP5_A7T,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R4-OR23/2020","EPI_ISL_1626526","2020-11-01","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",35,"Hospitalized",null,"Original",null,null,"B.1.1.25","GR","(NSP14_R163C,NSP16_V78I,N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP3_A264T)"]
["hCoV-19/Bangladesh/NGRI-R4-OR24/2020","EPI_ISL_1626527","2020-11-02","Asia / Bangladesh / Chittagong / Noakhali","Human",null,null,"Male",27,"Hospitalized",null,"Original",null,null,"B.1.1.25","GR","(N_R203K,N_G204R,NSP2_I120F,NSP2_W450C,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-NSTU-02/2020","EPI_ISL_514434","2020-07-22","Asia / Bangladesh / Chittagong / Noakhali / Companiganj Upazila","Human",null,null,"Male",30,"Live",null,"Original","Nasopharyngeal and oropharyngeal swab",null,"B.1.36.8","GH","(Spike_G769V,NSP2_A476V,N_S194L,NS3_Q57H,N_G18C,NS6_W27L,NSP12_P323L,Spike_D614G,NSP3_L373M)"]
["hCoV-19/Bangladesh/NGRI-NSTU-03/2020","EPI_ISL_514440","2020-07-22","Asia / Bangladesh / Chittagong / Noakhali / Companigonj","Human",null,null,"Male",38,"Live",null,"Original","Nasopharyngeal and oropharyngeal swab",null,"B.1.1.25","GR","(N_R203K,NSP5_P132S,N_G204R,N_P67L,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP14_S255I)"]
["hCoV-19/Bangladesh/NGRI-NSTU-05/2020","EPI_ISL_514441","2020-07-23","Asia / Bangladesh / Chittagong / Noakhali / Begumganj","Human",null,null,"Male",41,"Live",null,"Original","Nasopharyngeal and oropharyngeal swab",null,"B.1.36.8","GH","(NSP10_V97A,N_S194L,NS3_Q57H,NSP12_P323L,Spike_D614G,NSP3_L373M)"]
["hCoV-19/Bangladesh/NGRI-NSTU-06/2020","EPI_ISL_514442","2020-07-23","Asia / Bangladesh / Chittagong / Noakhali / Begumganj","Human",null,null,"Male",50,"Live",null,"Original","Nasopharyngeal and oropharyngeal swab",null,"B.1","G","(NSP3_K1077N,NSP12_T870I,NSP2_I120F,NSP3_T64I,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-NSTU-16/2020","EPI_ISL_514580","2020-07-21","Asia / Bangladesh / Chittagong / Noakhali / Kabirhat","Human",null,null,"Male",33,"Live",null,"Original",null,null,"B.1.1.25","GR","(N_R203K,N_G204R,NSP2_I120F,NSP12_P323L,NSP5_K90R,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-NSTU-18/2020","EPI_ISL_514613","2020-07-21","Asia / Bangladesh / Chittagong / Noakhali / Kabirhat","Human",null,null,"Male",51,"Live",null,"Original","Nasopharyngeal and oropharyngeal swab",null,"B.1.1.25","GR","(N_R203K,NSP5_P132S,N_G204R,NSP2_I120F,NSP12_P323L,Spike_D614G,NSP14_S255I)"]
["hCoV-19/Bangladesh/NGRI-NSTU-31/2020","EPI_ISL_514614","2020-07-21","Asia / Bangladesh / Chittagong / Noakhali / Kabirhat","Human",null,null,"Male",73,"Live",null,"Original","Nasopharyngeal and oropharyngeal swab",null,"B.1.36.16","GH","(NS3_S166L,N_S194L,NS3_Q57H,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-R2-1/2020","EPI_ISL_1595918","2020-09-26","Asia / Bangladesh / Noakhali","Human",null,null,"Male",45,"Live",null,"Original",null,null,"B.1.36.16","GH","(NSP3_L1754I,N_S194L,NS3_Q57H,NSP12_P323L,Spike_D614G)"]
["hCoV-19/Bangladesh/NGRI-NSTU-21/2020","EPI_ISL_514615","2020-07-20","Asia / Bangladesh / Chittagong / Lakshmipur / Lakshmipur","Human",null,null,"Male",24,"Live",null,"Original","Nasopharyngeal and oropharyngeal swab",null,"B.1.36.16","GH","(N_S194L,NSP3_T942I,NS3_Q57H,NSP2_T429I,NSP3_I310V,NSP12_P323L,Spike_D614G,Spike_Q675H)"]