
Virulence variation of Israeli populations of Puccinia graminis f. sp. tritici during the period 2009 – 2019
Kosman et al.

Table S6. Characterization of the annual Pgt collections of 2009 - 2019

Within-population analysis  of original data

Pgt_Israel_2009 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11110111111111110011				TKTTF		0.733 ± 0.114
ph2		11111111111111110011				TTTTF		0.133 ± 0.088
ph3		11111111111011110011				TTSTF		0.067 ± 0.064
ph4		11111111011111110011				TTKTF		0.067 ± 0.064


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11110111111111110011			17.000	0.850	0.700
ph2		11111111111111110011			18.000	0.900	0.800
ph3		11111111111011110011			17.000	0.850	0.700
ph4		11111111011111110011			17.000	0.850	0.700
 		Average for phenotypes 			17.250	0.863	0.725	
 		Average for individuals 		17.133	0.857	0.713



Pgt_Israel_2010 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11111111011111110011				TTKTF		0.450 ± 0.064
ph2		11111111111111110011				TTTTF		0.217 ± 0.053
ph3		11111111011101110011				TTKKF		0.117 ± 0.041
ph4		11101111111101110011				STTKF		0.033 ± 0.023
ph5		11111111111101110011				TTTKF		0.033 ± 0.023
ph6		11111111010111110011				TTHTF		0.017 ± 0.017
ph7		11111110001100110011				TSFFF		0.017 ± 0.017
ph8		11111111010110110011				TTHPF		0.017 ± 0.017
ph9		11101110011100110011				SSKFF		0.017 ± 0.017
ph10		11111111110111110011				TTRTF		0.017 ± 0.017
ph11		01101111011101110011				JTKKF		0.017 ± 0.017
ph12		11111110000111110011				TSCTF		0.017 ± 0.017
ph13		11111101011111100011				TRKSF		0.017 ± 0.017
ph14		11111111010101110011				TTHKF		0.017 ± 0.017


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11111111011111110011			17.000	0.850	0.700
ph2		11111111111111110011			18.000	0.900	0.800
ph3		11111111011101110011			16.000	0.800	0.600
ph4		11101111111101110011			16.000	0.800	0.600
ph5		11111111111101110011			17.000	0.850	0.700
ph6		11111111010111110011			16.000	0.800	0.600
ph7		11111110001100110011			13.000	0.650	0.300
ph8		11111111010110110011			15.000	0.750	0.500
ph9		11101110011100110011			13.000	0.650	0.300
ph10		11111111110111110011			17.000	0.850	0.700
ph11		01101111011101110011			14.000	0.700	0.400
ph12		11111110000111110011			14.000	0.700	0.400
ph13		11111101011111100011			15.000	0.750	0.500
ph14		11111111010101110011			15.000	0.750	0.500
 		Average for phenotypes 			15.429	0.771	0.543	
 		Average for individuals 		16.717	0.836	0.672



Pgt_Israel_2011 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11111111011111110011				TTKTF		0.633 ± 0.088
ph2		11111111011111110001				TTKTC		0.067 ± 0.046
ph3		11110111111111110011				TKTTF		0.067 ± 0.046
ph4		11111111111111110011				TTTTF		0.067 ± 0.046
ph5		11101111011111010011				STKRF		0.033 ± 0.033
ph6		11111111101111110011				TTPTF		0.033 ± 0.033
ph7		11111011011111110001				TPKTC		0.033 ± 0.033
ph8		11111111011011110011				TTJTF		0.033 ± 0.033
ph9		11111111111111110001				TTTTC		0.033 ± 0.033


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11111111011111110011			17.000	0.850	0.700
ph2		11111111011111110001			16.000	0.800	0.600
ph3		11110111111111110011			17.000	0.850	0.700
ph4		11111111111111110011			18.000	0.900	0.800
ph5		11101111011111010011			15.000	0.750	0.500
ph6		11111111101111110011			17.000	0.850	0.700
ph7		11111011011111110001			15.000	0.750	0.500
ph8		11111111011011110011			16.000	0.800	0.600
ph9		11111111111111110001			17.000	0.850	0.700
 		Average for phenotypes 			16.444	0.822	0.644	
 		Average for individuals 		16.833	0.842	0.683



Pgt_Israel_2012 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11111111111111110011				TTTTF		0.360 ± 0.068
ph2		11111111011111110011				TTKTF		0.340 ± 0.067
ph3		11101111011111110011				STKTF		0.060 ± 0.034
ph4		11110111111111110011				TKTTF		0.040 ± 0.028
ph5		11111110111111110011				TSTTF		0.040 ± 0.028
ph6		10111111011111110011				PTKTF		0.020 ± 0.020
ph7		11101111111111100011				STTSF		0.020 ± 0.020
ph8		01111111101111110011				KTPTF		0.020 ± 0.020
ph9		11101011111111110011				SPTTF		0.020 ± 0.020
ph10		11101110011101110011				SSKKF		0.020 ± 0.020
ph11		10110111111111110011				PKTTF		0.020 ± 0.020
ph12		11111111111101110011				TTTKF		0.020 ± 0.020
ph13		11111111010111110011				TTHTF		0.020 ± 0.020


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11111111111111110011			18.000	0.900	0.800
ph2		11111111011111110011			17.000	0.850	0.700
ph3		11101111011111110011			16.000	0.800	0.600
ph4		11110111111111110011			17.000	0.850	0.700
ph5		11111110111111110011			17.000	0.850	0.700
ph6		10111111011111110011			16.000	0.800	0.600
ph7		11101111111111100011			16.000	0.800	0.600
ph8		01111111101111110011			16.000	0.800	0.600
ph9		11101011111111110011			16.000	0.800	0.600
ph10		11101110011101110011			14.000	0.700	0.400
ph11		10110111111111110011			16.000	0.800	0.600
ph12		11111111111101110011			17.000	0.850	0.700
ph13		11111111010111110011			16.000	0.800	0.600
 		Average for phenotypes 			16.308	0.815	0.631	
 		Average for individuals 		17.120	0.856	0.712



Pgt_Israel_2013 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11111111011111110001				TTKTC		0.343 ± 0.080
ph2		11110111111111110011				TKTTF		0.171 ± 0.064
ph3		11110111011111110011				TKKTF		0.086 ± 0.047
ph4		11111111111111110011				TTTTF		0.086 ± 0.047
ph5		01111011001110110001				KPFPC		0.029 ± 0.028
ph6		11111111011100110001				TTKFC		0.029 ± 0.028
ph7		11111101011111110001				TRKTC		0.029 ± 0.028
ph8		11110010011111100001				TDKSC		0.029 ± 0.028
ph9		11111101111111110011				TRTTF		0.029 ± 0.028
ph10		11101111011111110001				STKTC		0.029 ± 0.028
ph11		10110111101011100011				PKNSF		0.029 ± 0.028
ph12		11111111011101110001				TTKKC		0.029 ± 0.028
ph13		11111111011101110011				TTKKF		0.029 ± 0.028
ph14		11111111011111110011				TTKTF		0.029 ± 0.028
ph15		11100111011111110001				SKKTC		0.029 ± 0.028


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11111111011111110001			16.000	0.800	0.600
ph2		11110111111111110011			17.000	0.850	0.700
ph3		11110111011111110011			16.000	0.800	0.600
ph4		11111111111111110011			18.000	0.900	0.800
ph5		01111011001110110001			12.000	0.600	0.200
ph6		11111111011100110001			14.000	0.700	0.400
ph7		11111101011111110001			15.000	0.750	0.500
ph8		11110010011111100001			12.000	0.600	0.200
ph9		11111101111111110011			17.000	0.850	0.700
ph10		11101111011111110001			15.000	0.750	0.500
ph11		10110111101011100011			13.000	0.650	0.300
ph12		11111111011101110001			15.000	0.750	0.500
ph13		11111111011101110011			16.000	0.800	0.600
ph14		11111111011111110011			17.000	0.850	0.700
ph15		11100111011111110001			14.000	0.700	0.400
 		Average for phenotypes 			15.133	0.757	0.513	
 		Average for individuals 		15.886	0.794	0.589



Pgt_Israel_2014 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11111111011111110011				TTKTF		0.200 ± 0.068
ph2		11110111111111110011				TKTTF		0.114 ± 0.054
ph3		11111111111111110011				TTTTF		0.114 ± 0.054
ph4		11111111011111110001				TTKTC		0.086 ± 0.047
ph5		11111111110111110001				TTRTC		0.086 ± 0.047
ph6		11110111011111110011				TKKTF		0.086 ± 0.047
ph7		11110111101111110011				TKPTF		0.057 ± 0.039
ph8		11101101111001110011				SRSKF		0.029 ± 0.028
ph9		11111111110011110011				TTQTF		0.029 ± 0.028
ph10		11101111010101100001				STHJC		0.029 ± 0.028
ph11		11110111111111010011				TKTRF		0.029 ± 0.028
ph12		11110111110111110001				TKRTC		0.029 ± 0.028
ph13		11110111011111110001				TKKTC		0.029 ± 0.028
ph14		11110111011011110011				TKJTF		0.029 ± 0.028
ph15		11110111001111110011				TKFTF		0.029 ± 0.028
ph16		11111111111111110001				TTTTC		0.029 ± 0.028


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11111111011111110011			17.000	0.850	0.700
ph2		11110111111111110011			17.000	0.850	0.700
ph3		11111111111111110011			18.000	0.900	0.800
ph4		11111111011111110001			16.000	0.800	0.600
ph5		11111111110111110001			16.000	0.800	0.600
ph6		11110111011111110011			16.000	0.800	0.600
ph7		11110111101111110011			16.000	0.800	0.600
ph8		11101101111001110011			14.000	0.700	0.400
ph9		11111111110011110011			16.000	0.800	0.600
ph10		11101111010101100001			12.000	0.600	0.200
ph11		11110111111111010011			16.000	0.800	0.600
ph12		11110111110111110001			15.000	0.750	0.500
ph13		11110111011111110001			15.000	0.750	0.500
ph14		11110111011011110011			15.000	0.750	0.500
ph15		11110111001111110011			15.000	0.750	0.500
ph16		11111111111111110001			17.000	0.850	0.700
 		Average for phenotypes 			15.688	0.784	0.569	
 		Average for individuals 		16.286	0.814	0.629



Pgt_Israel_2015 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11111111110011110001				TTQTC		0.450 ± 0.064
ph2		11111111110111110001				TTRTC		0.233 ± 0.055
ph3		11111111111111110011				TTTTF		0.100 ± 0.039
ph4		11111111110001110001				TTQKC		0.033 ± 0.023
ph5		11111111111011110011				TTSTF		0.033 ± 0.023
ph6		11111111011011110001				TTJTC		0.017 ± 0.017
ph7		11111111110111110011				TTRTF		0.017 ± 0.017
ph8		11111111110111100001				TTRSC		0.017 ± 0.017
ph9		11111111110011100001				TTQSC		0.017 ± 0.017
ph10		11111111110000110001				TTQFC		0.017 ± 0.017
ph11		01101111110001110001				JTQKC		0.017 ± 0.017
ph12		11111111011111110001				TTKTC		0.017 ± 0.017
ph13		11111111111111100001				TTTSC		0.017 ± 0.017
ph14		11101110110111110001				SSRTC		0.017 ± 0.017


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11111111110011110001			15.000	0.750	0.500
ph2		11111111110111110001			16.000	0.800	0.600
ph3		11111111111111110011			18.000	0.900	0.800
ph4		11111111110001110001			14.000	0.700	0.400
ph5		11111111111011110011			17.000	0.850	0.700
ph6		11111111011011110001			15.000	0.750	0.500
ph7		11111111110111110011			17.000	0.850	0.700
ph8		11111111110111100001			15.000	0.750	0.500
ph9		11111111110011100001			14.000	0.700	0.400
ph10		11111111110000110001			13.000	0.650	0.300
ph11		01101111110001110001			12.000	0.600	0.200
ph12		11111111011111110001			16.000	0.800	0.600
ph13		11111111111111100001			16.000	0.800	0.600
ph14		11101110110111110001			14.000	0.700	0.400
 		Average for phenotypes 			15.143	0.757	0.514	
 		Average for individuals 		15.517	0.776	0.552



Pgt_Israel_2016 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11110111001111110001				TKFTC		0.200 ± 0.126
ph2		11110111111111110001				TKTTC		0.200 ± 0.126
ph3		11111111011111110001				TTKTC		0.100 ± 0.095
ph4		11110111111111110011				TKTTF		0.100 ± 0.095
ph5		11111111110101110001				TTRKC		0.100 ± 0.095
ph6		01111111110101110001				KTRKC		0.100 ± 0.095
ph7		11111111110111100001				TTRSC		0.100 ± 0.095
ph8		11111111111111110001				TTTTC		0.100 ± 0.095


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11110111001111110001			14.000	0.700	0.400
ph2		11110111111111110001			16.000	0.800	0.600
ph3		11111111011111110001			16.000	0.800	0.600
ph4		11110111111111110011			17.000	0.850	0.700
ph5		11111111110101110001			15.000	0.750	0.500
ph6		01111111110101110001			14.000	0.700	0.400
ph7		11111111110111100001			15.000	0.750	0.500
ph8		11111111111111110001			17.000	0.850	0.700
 		Average for phenotypes 			15.500	0.775	0.550	
 		Average for individuals 		15.400	0.770	0.540



Pgt_Israel_2017 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11110111111111110011				TKTTF		0.350 ± 0.107
ph2		11110111011111110011				TKKTF		0.300 ± 0.102
ph3		11110111011111110001				TKKTC		0.100 ± 0.067
ph4		11101111110011110001				STQTC		0.050 ± 0.049
ph5		11110111001111110011				TKFTF		0.050 ± 0.049
ph6		11110111110011110001				TKQTC		0.050 ± 0.049
ph7		11111111110111110001				TTRTC		0.050 ± 0.049
ph8		11111111111111110011				TTTTF		0.050 ± 0.049


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11110111111111110011			17.000	0.850	0.700
ph2		11110111011111110011			16.000	0.800	0.600
ph3		11110111011111110001			15.000	0.750	0.500
ph4		11101111110011110001			14.000	0.700	0.400
ph5		11110111001111110011			15.000	0.750	0.500
ph6		11110111110011110001			14.000	0.700	0.400
ph7		11111111110111110001			16.000	0.800	0.600
ph8		11111111111111110011			18.000	0.900	0.800
 		Average for phenotypes 			15.625	0.781	0.563	
 		Average for individuals 		16.100	0.805	0.610

Pgt_Israel_2018 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11111111110011110001				TTQTC		0.429 ± 0.132
ph2		11110111111111110011				TKTTF		0.214 ± 0.110
ph3		11111111111111110011				TTTTF		0.214 ± 0.110
ph4		11110111111111110001				TKTTC		0.071 ± 0.069
ph5		11110111111111100011				TKTSF		0.071 ± 0.069


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11111111110011110001			15.000	0.750	0.500
ph2		11110111111111110011			17.000	0.850	0.700
ph3		11111111111111110011			18.000	0.900	0.800
ph4		11110111111111110001			16.000	0.800	0.600
ph5		11110111111111100011			16.000	0.800	0.600
 	Average for phenotypes 				16.400	0.820	0.640	
 	Average for individuals 			16.214	0.811	0.621


Pgt_Israel_2019 New 20 diff.vat

Phenotype	Binary pattern of phenotype			Hexadecimal	Phenotype frequencies
ph1		11010111111001100001				RKSJC		0.143 ± 0.132
ph2		11101111110101100001				STRJC		0.143 ± 0.132
ph3		11110111111111110011				TKTTF		0.143 ± 0.132
ph4		11100111111101100001				SKTJC		0.143 ± 0.132
ph5		11001110110001110001				QSQKC		0.143 ± 0.132
ph6		11100111011101110001				SKKKC		0.143 ± 0.132
ph7		11110111111001110011				TKSKF		0.143 ± 0.132


Phenotype	Binary pattern of phenotype		VC	RVC	VU	
ph1		11010111111001100001			12.000	0.600	0.200
ph2		11101111110101100001			13.000	0.650	0.300
ph3		11110111111111110011			17.000	0.850	0.700
ph4		11100111111101100001			13.000	0.650	0.300
ph5		11001110110001110001			11.000	0.550	0.100
ph6		11100111011101110001			13.000	0.650	0.300
ph7		11110111111001110011			15.000	0.750	0.500
 		Average for phenotypes 			13.429	0.671	0.343	
 		Average for individuals 		13.429	0.671	0.343



Virulence frequency

 	P1		P2		P3		P4		P5		P6		P7		P8		P9		P10		P11		
Sr_5	1 ± 0		0.983 ± 0.017	1 ± 0		0.980 ± 0.020	0.971 ± 0.028	1 ± 0		0.983 ± 0.017	0.900 ± 0.095	1 ± 0		1 ± 0		1 ± 0	
Sr_21	1 ± 0		1 ± 0		1 ± 0		0.960 ± 0.028	0.971 ± 0.028	1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0	
Sr_9e	1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		0.714 ± 0.171	
Sr_7b	1 ± 0		0.933 ± 0.032	0.967 ± 0.033	0.880 ± 0.046	0.943 ± 0.039	0.943 ± 0.039	0.967 ± 0.023	1 ± 0		0.950 ± 0.049	1 ± 0		0.429 ± 0.187	
Sr_11	0.267 ± 0.114	1 ± 0		0.933 ± 0.046	0.940 ± 0.034	0.657 ± 0.080	0.600 ± 0.083	1 ± 0		0.500 ± 0.158	0.150 ± 0.080	0.643 ± 0.128	0.286 ± 0.171	
Sr_6	1 ± 0		1 ± 0		0.967 ± 0.033	0.980 ± 0.020	0.943 ± 0.039	1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0	
Sr_8a	1 ± 0		0.983 ± 0.017	1 ± 0		1 ± 0		0.943 ± 0.039	0.971 ± 0.028	1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0	
Sr_9g	1 ± 0		0.950 ± 0.028	1 ± 0		0.940 ± 0.034	0.971 ± 0.028	1 ± 0		0.983 ± 0.017	1 ± 0		1 ± 0		1 ± 0		0.857 ± 0.132	
Sr_36	0.933 ± 0.064	0.300 ± 0.059	0.200 ± 0.073	0.540 ± 0.070	0.314 ± 0.078	0.514 ± 0.084	0.967 ± 0.023	0.700 ± 0.145	0.550 ± 0.111	1 ± 0		0.857 ± 0.132	
Sr_9b	1 ± 0		0.967 ± 0.023	0.967 ± 0.033	0.980 ± 0.020	0.943 ± 0.039	0.914 ± 0.047	1 ± 0		0.800 ± 0.126	0.950 ± 0.049	1 ± 0		1 ± 0	
Sr_30	1 ± 0		0.917 ± 0.036	1 ± 0		0.980 ± 0.020	1 ± 0		0.829 ± 0.064	0.183 ± 0.050	0.700 ± 0.145	0.850 ± 0.080	0.571 ± 0.132	0.714 ± 0.171	
Sr_17	0.933 ± 0.064	1 ± 0		0.967 ± 0.033	1 ± 0		0.971 ± 0.028	0.914 ± 0.047	0.417 ± 0.064	1 ± 0		0.900 ± 0.067	0.571 ± 0.132	0.571 ± 0.187	
Sr_9a	1 ± 0		0.750 ± 0.056	1 ± 0		0.960 ± 0.028	0.914 ± 0.047	0.943 ± 0.039	0.933 ± 0.032	0.800 ± 0.126	1 ± 0		1 ± 0		0.143 ± 0.132	
Sr_9d	1 ± 0		0.950 ± 0.028	1 ± 0		1 ± 0		0.943 ± 0.039	1 ± 0		0.983 ± 0.017	1 ± 0		1 ± 0		1 ± 0		1 ± 0	
Sr_10	1 ± 0		1 ± 0		0.967 ± 0.033	1 ± 0		1 ± 0		0.971 ± 0.028	1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0	
Sr_Tmp	1 ± 0		0.983 ± 0.017	1 ± 0		0.980 ± 0.020	0.943 ± 0.039	0.971 ± 0.028	0.950 ± 0.028	0.900 ± 0.095	1 ± 0		0.929 ± 0.069	0.571 ± 0.187	
Sr_24	0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0	
Sr_31	0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0		0 ± 0	
Sr_38	1 ± 0		1 ± 0		0.867 ± 0.062	1 ± 0		0.457 ± 0.084	0.714 ± 0.076	0.150 ± 0.046	0.100 ± 0.095	0.750 ± 0.097	0.500 ± 0.134	0.286 ± 0.171	
Sr_McN	1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0		1 ± 0	


File comments

		File Name			Comments	
P1	2009	Pgt_Israel_2009 New 20 diff.vat		
P2	2010	Pgt_Israel_2010 New 20 diff.vat		
P3	2011	Pgt_Israel_2011 New 20 diff.vat		
P4	2012	Pgt_Israel_2012 New 20 diff.vat		
P5	2013	Pgt_Israel_2013 New 20 diff.vat		
P6	2014	Pgt_Israel_2014 New 20 diff.vat		
P7	2015	Pgt_Israel_2015 New 20 diff.vat		
P8	2016	Pgt_Israel_2016 New 20 diff.vat		
P9	2017	Pgt_Israel_2017 New 20 diff.vat		
P10	2018	Pgt_Israel_2018 New 20 diff.vat		
P11	2019	Pgt_Israel_2019 New 20 diff.vat		

