{"text_format":"3","workbook":"xlsx","n_sheets":11,"sheets":["Table S1","Table S2","Table S3","Table S4","Table S5","Table S6","Table S7","Table S8","Table S9","Table S10","Table S11"],"not_rendered":{"defined_names":2},"read":"whole","date_system":"1900"}

{"sheet":"Table S1","index":0,"n_rows":78,"n_cols":9,"rows_kept":78,"merged":[[0,0,0,7],[1,2,1,3],[1,4,1,5],[1,6,1,7],[2,5,7,5],[2,6,7,6],[2,7,7,7],[2,8,7,8],[8,5,9,5],[8,6,9,6],[8,7,9,7],[8,8,9,8],[10,5,41,5],[10,6,41,6],[10,7,41,7],[10,8,41,8],[42,5,67,5],[42,6,67,6],[42,7,67,7],[42,8,67,8],[68,5,73,5],[68,6,73,6],[68,7,73,7],[68,8,73,8],[74,5,77,5],[74,6,77,6],[74,7,77,7],[74,8,77,8]]}
["Table S1 Data Information"]
["Age","breed","Run","BioProject","BioSample","title","DOI"]
["2-year-old","Bama","SRR12511398","PRJNA637678","SAMN15870115","A Pig Body Map Transcriptome Uncovers Diverse Organ Physiology with emphasis on skeletal muscle and adipose tissues and Evolutionary Dynamics of Transcription","DOI: 10.1046/j.1365-2052.2001.00752.x","Anim Genet\n","2001 Jun"]
["2-year-old","Bama","SRR12511397","PRJNA637678","SAMN15870116"]
["2-year-old","Bama","SRR12511396","PRJNA637678","SAMN15870117"]
["2-year-old","Bama","SRR12511395","PRJNA637678","SAMN15870118"]
["2-year-old","Bama","SRR12511394","PRJNA637678","SAMN15870119"]
["2-year-old","Bama","SRR12511393","PRJNA637678","SAMN15870120"]
["2 weeks","Large White","SRR10764658","PRJNA597497","SAMN13676582","A compendium and comparative epigenomics analysis of cis-regulatory elements in the pig genome","doi: 10.1038/s41467-021-22448-x","Nat Commu"," 2021 Apr"]
["2 weeks","Large White","SRR10764659","PRJNA597497","SAMN13676582"]
["2 years old","Bamaxiang","SRR7585923","PRJNA482496","SAMN09691011","Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data","DOI:10.1007/s11427-019-9551-7","Science China. Life sciences","2019 Apr"]
["2 years old","Bamaxiang","SRR7591435","PRJNA482496","SAMN09691011"]
["2 years old","Bamaxiang","SRR7591436","PRJNA482496","SAMN09691011"]
["Fetus(90 days)","Bamaxiang","SRR7585922","PRJNA482496","SAMN09691012"]
["Fetus(90 days)","Bamaxiang","SRR7591437","PRJNA482496","SAMN09691012"]
["Fetus(90 days)","Bamaxiang","SRR7591438","PRJNA482496","SAMN09691012"]
["Fetus(90 days)","Bamaxiang","SRR7591439","PRJNA482496","SAMN09691012"]
["Fetus(90 days)","Bamaxiang","SRR7591440","PRJNA482496","SAMN09691012"]
["Fetus(90 days)","Bamaxiang","SRR7591441","PRJNA482496","SAMN09691012"]
["Fetus(90 days)","Bamaxiang","SRR7591442","PRJNA482496","SAMN09691012"]
["2 years old","Bamaxiang","SRR7585921","PRJNA482496","SAMN09691009"]
["2 years old","Bamaxiang","SRR7591443","PRJNA482496","SAMN09691009"]
["2 years old","Bamaxiang","SRR7591444","PRJNA482496","SAMN09691009"]
["2 years old","Bamaxiang","SRR7585920","PRJNA482496","SAMN09691010"]
["2 years old","Bamaxiang","SRR7591445","PRJNA482496","SAMN09691010"]
["2 years old","Bamaxiang","SRR7591446","PRJNA482496","SAMN09691010"]
["2 years old","Bamaxiang","SRR7585919","PRJNA482496","SAMN09691007"]
["2 years old","Bamaxiang","SRR7591447","PRJNA482496","SAMN09691007"]
["2 years old","Bamaxiang","SRR7591448","PRJNA482496","SAMN09691007"]
["2 years old","Bamaxiang","SRR7585918","PRJNA482496","SAMN09691008"]
["2 years old","Bamaxiang","SRR7591451","PRJNA482496","SAMN09691008"]
["2 years old","Bamaxiang","SRR7591452","PRJNA482496","SAMN09691008"]
["2 years old","Bamaxiang","SRR7585913","PRJNA482496","SAMN09691006"]
["2 years old","Bamaxiang","SRR7591453","PRJNA482496","SAMN09691006"]
["2 years old","Bamaxiang","SRR7591454","PRJNA482496","SAMN09691006"]
["not collected","Chinese wild boar","SRR7585912","PRJNA482496","SAMN09691003"]
["not collected","Large White","SRR7585917","PRJNA482496","SAMN09690999"]
["not collected","Large White","SRR7585916","PRJNA482496","SAMN09691000"]
["not collected","Large White","SRR7585911","PRJNA482496","SAMN09691004"]
["not collected","Rongchang","SRR7585915","PRJNA482496","SAMN09691001"]
["not collected","Rongchang","SRR7585914","PRJNA482496","SAMN09691002"]
["not collected","Large White","SRR7585910","PRJNA482496","SAMN09691005"]
["not collected","Large White pigs","SRR12107015","PRJNA642743","SAMN15398107","The asynchronous establishment of chromatin 3D architecture between in vitro fertilized and uniparental preimplantation pig embryos","doi: 10.1186/s13059-020-02095-z","Genome Biology","2020 Aug"]
["not collected","Large White pigs","SRR12107016","PRJNA642743","SAMN15398107"]
["not collected","Large White pigs","SRR12107017","PRJNA642743","SAMN15398106"]
["not collected","Large White pigs","SRR12107018","PRJNA642743","SAMN15398106"]
["not collected","Large White pigs","SRR12107019","PRJNA642743","SAMN15398105"]
["not collected","Large White pigs","SRR12107020","PRJNA642743","SAMN15398105"]
["not collected","Large White pigs","SRR12107021","PRJNA642743","SAMN15398104"]
["not collected","Large White pigs","SRR12107022","PRJNA642743","SAMN15398103"]
["not collected","Large White pigs","SRR12107023","PRJNA642743","SAMN15398103"]
["not collected","Large White pigs","SRR12107024","PRJNA642743","SAMN15398102"]
["not collected","Large White pigs","SRR12107025","PRJNA642743","SAMN15398102"]
["not collected","Large White pigs","SRR12107026","PRJNA642743","SAMN15398101"]
["not collected","Large White pigs","SRR12107027","PRJNA642743","SAMN15398100"]
["not collected","Large White pigs","SRR12107028","PRJNA642743","SAMN15398099"]
["not collected","Large White pigs","SRR12107029","PRJNA642743","SAMN15398098"]
["not collected","Large White pigs","SRR12107030","PRJNA642743","SAMN15398097"]
["not collected","Large White pigs","SRR12107031","PRJNA642743","SAMN15398096"]
["not collected","Large White pigs","SRR12107032","PRJNA642743","SAMN15398095"]
["not collected","Large White pigs","SRR12107033","PRJNA642743","SAMN15398094"]
["not collected","Large White pigs","SRR12107034","PRJNA642743","SAMN15398093"]
["not collected","Large White pigs","SRR12107035","PRJNA642743","SAMN15398092"]
["not collected","Large White pigs","SRR12107036","PRJNA642743","SAMN15398092"]
["not collected","Large White pigs","SRR12107037","PRJNA642743","SAMN15398091"]
["not collected","Large White pigs","SRR12107038","PRJNA642743","SAMN15398090"]
["not collected","Large White pigs","SRR12107039","PRJNA642743","SAMN15398120"]
["not collected","Large White pigs","SRR12107040","PRJNA642743","SAMN15398119"]
["embryonic day 35","Luchuan pig","SRR13651466","PRJNA700585","SAMN17833785","Reorganization of chromatin architecture during prenatal development of porcine skeletal muscle","DOI: 10.1093/dnares/dsab003","Journal List","2021 May"]
["embryonic day 35","Luchuan pig","SRR13651467","PRJNA700585","SAMN17833784"]
["embryonic day 80","Luchuan pig","SRR13651469","PRJNA700585","SAMN17833782"]
["embryonic day 80","Luchuan pig","SRR13651470","PRJNA700585","SAMN17833781"]
["embryonic day 80","Luchuan pig","SRR13651471","PRJNA700585","SAMN17833780"]
["embryonic day 35","Luchuan pig","SRR13651468","PRJNA700585","SAMN17833783"]
["300 day","Meishan","SRR11509496","PRJNA613109","SAMN14422843","The Meishan pig genome reveals structural variation-mediated gene expression and phenotypic divergence underlying Asian pig domestication","DOI: 10.1111/1755-0998.13396","RESOURCE ARTICLE","2021 Apr"]
["300 day","Meishan","SRR11509497","PRJNA613109","SAMN14422843"]
["300 day","Meishan","SRR11509498","PRJNA613109","SAMN14422843"]
["300 day","Meishan","SRR11509499","PRJNA613109","SAMN14422843"]

{"sheet":"Table S2","index":1,"n_rows":73,"n_cols":19,"rows_kept":73,"merged":[[0,0,0,14]]}
["Table S2 Summary statistics of the Hi-C data  for all samples. This table shows the number of Hi-C sequencing reads in the category of each processing step in Juicer."]
["Sample","breed","tissue","Sequenced Reads","clean.reads","readslength","deepth","Normal Paired","Chimeric Paired","Chimeric Ambiguous","Unmapped","mappingrate","Alignable Reads (Normal+Chimeric Paired)","Low Mapping Quality (<30) ","HiCContacts","Inter chromosomal","Intra chromosomal","Intra Short Range (<20 kb) ","Intra Long Range (≥20 kb) "]
["SAMEA103989211","Large white","liver",90948924,{"$f":"D3-17186-110821","v":90820917},150,{"$f":"2*D3*F3/(3*1000000000)","v":9.0948924},42079745,40818303,6518172,1532704,{"$f":"1-(K3/D3)","v":{"v":0.9831476400974244,"d":"98.31%"}},82898048,9351877,38946912,6057841,32889071,19575081,13309968]
["SAMEA103989648","Large white","liver",165529922,{"$f":"D4-345627-23785","v":165160510},150,16.5529922,109833661,49381314,4396902,1918045,{"v":0.9884126991855889,"d":"98.84%"},159214975,12351010,106104891,18081226,88023665,44173949,43846188]
["SAMEA103989993","Large white","liver",165285596,{"$f":"D5-324554-22399","v":164938643},150,16.5285596,95119966,63017642,5358959,1789029,{"v":0.9891761348641657,"d":"98.92%"},158137608,12648863,110793087,21567318,89225769,38788634,50432179]
["SAMEA103990030","Large white","liver",168050522,{"$f":"D6-326223-26724","v":167697575},150,16.8050522,100813724,60141192,5394472,1701134,{"v":0.9898772465580321,"d":"98.99%"},160954916,12291075,104583064,22178910,82404154,27874543,54526126]
["SAMEA103990269","Large white","liver",195573465,{"$f":"D7-159217-37048","v":195377200},150,19.5573465,82045373,90711089,19487184,3329819,{"v":0.9829740757520454,"d":"98.30%"},172756462,24647361,93453082,17205318,76247764,36265417,39957790]
["SAMEA103990890","Large white","liver",157480346,{"$f":"157480346-269021-24797","v":157186528},150,15.7480346,92269081,59176622,4566792,1467851,{"v":0.99067914798714,"d":"99.07%"},151445703,10773661,99175210,16270053,82905157,34402993,48498001]
["SAMEA7390795","Large white","muscle",494332893,{"$f":"D9-46863-1945816","v":492340214},150,49.4332893,252073242,218683948,16535316,7040387,{"v":0.9857578018786624,"d":"98.58%"},470757190,34197163,293080536,136358407,156722129,41485423,115231989]
["SAMEA7390796","Large white","muscle",654909642,{"$f":"D10-60848-3593297","v":651255497},150,65.4909642,372101343,249921619,21039810,11846870,{"v":0.98191068013013,"d":"98.19%"},622022962,44983062,400636264,146940165,253696099,71983566,181697504]
["SAMEA7390797","Large white","muscle",476204172,{"$f":"D11-44226-2097507","v":474062439},150,47.6204172,302773474,149131573,14834247,9464878,{"v":0.9801243278481819,"d":"98.01%"},451905047,41264263,296929767,85825377,211104390,114965700,96125074]
["SAMEA7390798","Large white","muscle",685369147,{"$f":"D12-56176-4810197","v":680502774},150,68.5369147,424289850,221543970,23002739,16532588,{"v":0.9758778344890976,"d":"97.59%"},645833820,57079386,414283325,166661664,247621661,89130582,158471282]
["SAMEA7390799","Large white","muscle",646908804,{"$f":"D13-42496-3864967","v":643001341},150,64.6908804,383250887,228436728,21550323,13670866,{"v":0.9788673984409092,"d":"97.89%"},611687615,51311847,406684605,150459108,256225497,85097038,171122571]
["SAMEA7390800","Large white","muscle",489704084,{"$f":"D14-48220-1742242","v":487913622},150,48.9704084,258028558,209962929,15207928,6504669,{"v":0.9867171436536355,"d":"98.67%"},467991487,29901578,294043214,93402069,200641145,61285601,139341411]
["SAMEA7629003","Large white","liver",200398000,{"$f":"D27-350167","v":155044897},150,20.0398,78758098,94076583,23915210,3648109,{"v":0.9817956815936286,"d":"98.18%"},172834681,27645996,95179614,30249754,64929860,27177815,37750353]
["SAMEA7629006","Large white","liver",178399752,{"$f":"D16-160621-33518","v":178205613},150,17.8399752,72395906,78883488,23719952,3400406,{"v":0.9809394017543253,"d":"98.09%"},151279394,25511624,74658082,22694719,51963363,21826603,30135004]
["SAMEA7629015","Large white","muscle",133446573,{"$f":"D17-142567-25299","v":133278707},150,13.3446573,54985786,63170253,13579425,1711109,{"v":0.9871775725555725,"d":"98.72%"},118156039,9867554,37706069,13789921,23916148,8425236,15489246]
["SAMEA7629016","Large white","muscle",164356035,{"$f":"D18-1158981-30820","v":163166234},150,16.4356035,81458432,62918425,16907600,3071578,{"v":0.9813114376968269,"d":"98.13%"},144376857,12138936,38754876,15511574,23243302,9022160,14220771]
["SAMEA7629018","Large white","muscle",168227818,{"$f":"D19-120694-31673","v":168075451},150,16.8227818,72159406,77384170,16982361,1701881,{"v":0.9898834745630476,"d":"98.99%"},149543576,13777491,58444096,23794903,34649193,14096434,20552451]
["SAMEA7629032","Large white","liver",156071731,{"$f":"D20-111765-29278","v":155930688},150,15.6071731,61598213,72701952,19198633,2572933,{"v":0.9835144200457416,"d":"98.35%"},134300165,21460150,75313385,27112245,48201140,21551995,26647793]
["SAMEA7629033","Large white","liver",232883427,{"$f":"D21-175953-44050","v":232663424},150,23.2883427,89651971,103533252,34251068,5447136,{"v":0.9766100315931885,"d":"97.66%"},193185223,32598048,93844039,40941668,52902371,25664360,27235679]
["SAMEA7629044","Large white","muscle",148990261,{"$f":"D22-158554-28311","v":148803396},150,14.8990261,64398704,66047066,16884837,1659654,{"v":0.988860654455797,"d":"98.89%"},130445770,13231468,52815855,22314947,30500908,14929106,15571002]
["SAMEA7629046","Large white","muscle",140583105,{"$f":"D23-158554-26304","v":140398247},150,14.0583105,62920754,58170182,17661495,1830674,{"v":0.9869779942618283,"d":"98.70%"},121090936,10944907,38847987,18399350,20448637,9188570,11259629]
["SAMEA7629251","Large white","liver",157890403,{"$f":"D24-138000-29726","v":157722677},150,15.7890403,74547199,64061974,16255926,3025304,{"v":0.9808392154145049,"d":"98.08%"},138609173,19824905,76705799,15919143,60786656,21857407,38912791]
["SAMEA7629252","Large white","liver",261882311,{"$f":"D25-217715-49776","v":261614820},150,26.1882311,86883747,113671874,53641007,7685683,{"v":0.9706521491632935,"d":"97.07%"},200555621,39830716,106504426,31290311,75214115,22830784,52380109]
["SAMEA7629254","Large white","liver",159175067,{"$f":"D26-120049-29810","v":159025208},150,15.9175067,58956671,77495436,20280298,2442662,{"v":0.9846542423632214,"d":"98.47%"},136452107,20988207,76489489,18420161,58069328,20214675,37851865]
["SAMEA7629255","Large white","muscle",155395064,{"$f":"D27-143032-29291","v":155222741},150,15.5395064,57715992,79679100,16087122,1912850,{"v":0.9876904069488334,"d":"98.77%"},137395092,14656862,63536296,22232904,41303392,14540985,26760894]
["SAMEA7629257","Large white","muscle",142309276,{"$f":"D28-141351-26722","v":142141203},150,14.2309276,54632892,69203254,16512385,1960745,{"v":0.9862219452230225,"d":"98.62%"},123836146,12227398,51416957,18752109,32664848,10839797,21823839]
["SAMN09690999","Large white","ear",515902011,{"$f":"D29-1797037","v":514104974},150,51.5902011,210193810,277028837,22975265,5704099,{"v":0.9889434449209774,"d":"98.89%"},487222647,38694672,401180623,148116432,253064191,75037478,178001139]
["SAMN09691000","Large white","ear",501958388,{"$f":"D30-2145191","v":499813197},150,50.1958388,200727072,271422148,22621675,7187493,{"v":0.9856810979319665,"d":"98.57%"},472149220,39487263,383894834,158809785,225085049,76881841,148164559]
["SAMN09691001","Rongchang","ear",497838957,{"$f":"D31-1840346","v":495998611},150,49.7838957,200433456,264640846,24224419,8540236,{"v":0.9828453842755419,"d":"98.28%"},465074302,37504204,381828719,139702729,242125990,75731930,166363822]
["SAMN09691002","Rongchang","ear",551354086,{"$f":"D32-2321358","v":549032728},150,55.1354086,225097020,295739587,23399761,7117718,{"v":0.9870904774613387,"d":"98.71%"},520836607,37546492,427966385,133330139,294636246,83805820,210789336]
["SAMN09691003","Chinese wild boar","ear",254320731,{"$f":"D33-2022883-37723","v":252260125},150,25.4320731,75625120,161829678,8060493,8805440,{"v":0.9653766330201371,"d":"96.54%"},237454798,10160123,99037026,25748352,73288674,26107420,47167206]
["SAMN09691004","Large white","adipose",489178863,{"$f":"D34-3969843","v":485209020},150,48.9178863,162685314,292994148,16909656,16589745,{"v":0.9660865457304111,"d":"96.61%"},455679462,31506975,320477610,101568402,218909208,125738094,93137929]
["SAMN09691005","Large white","adipose",550354583,{"$f":"D35-1968137","v":548386446},150,55.0354583,172277207,348924769,20503329,8649278,{"v":0.9842841719372036,"d":"98.43%"},521201976,36182849,383370104,131624913,251745191,74688125,176904863]
["SAMN09691006","bamaxiang","liver",1159808664,{"$f":"D36-774510-149654-5556","v":1158878944},150,115.9808664,470049686,543959556,123229466,22569956,{"v":0.9805399315416736,"d":"98.05%"},1014009242,169113875,674562485,244830560,429731925,129569766,300139293]
["SAMN09691007","bamaxiang","liver",1272132667,{"$f":"D37-129121-983024-7068","v":1271013454},150,127.2132667,500143056,608632285,137985277,25372049,{"v":0.9800555007679871,"d":"98.01%"},1108775341,187847986,758640311,264221540,494418771,146279865,348119780]
["SAMN09691008","bamaxiang","liver",1203243513,{"$f":"D38-977452-115836-94800","v":1202055425},150,120.3243513,458081045,586896537,131573835,26692096,{"v":0.9778165469320091,"d":"97.78%"},1044977582,175505123,693085582,223002800,470082782,164115905,305949076]
["SAMN09691009","bamaxiang","liver",1362953064,{"$f":"D39-119466-873846-89","v":1361959663},150,136.2953064,487677769,704287506,149659520,21328269,{"v":0.9843514281134482,"d":"98.44%"},1191965275,195482419,787001760,326919351,460082409,177220980,282842594]
["SAMN09691010","bamaxiang","liver",1430124813,{"$f":"D40-947158-142053-61","v":1429035541},150,143.0124813,521235857,727772646,155853810,25262500,{"v":0.98233545787727,"d":"98.23%"},1249008503,200562015,797054042,326286745,470767297,173633846,297117103]
["SAMN09691011","bamaxiang","liver",1263155855,{"$f":"D41-812898-104484-54","v":1262238419},150,126.3155855,443520204,660803450,138717714,20114487,{"v":0.9840760054110662,"d":"98.41%"},1104323654,151063145,529209534,212161518,317048016,119458378,197578239]
["SAMN09691012","bamaxiang","liver",2048668284,{"$f":"D42-892585-112055-120-120-2500","v":2047660904},150,204.8668284,780944598,1031488144,199710820,36524722,{"v":0.9821714807198137,"d":"98.22%"},1812432742,197978249,627766125,190706560,437059565,177298431,259733731]
["SAMN13676582","Large white","muscle",1189583975,{"$f":"D43-160908-15939667","v":1173483400},150,118.9583975,495750558,562556890,88437000,42839527,{"v":0.9639878075862615,"d":"96.40%"},1058307448,130017867,666872245,148804319,518067926,268697817,248707707]
["SAMN14422843","Meishan","muscle",1051479058,{"$f":"D44-613306-2217651","v":1048648101},150,105.1479058,399449148,548773920,91707149,11548841,{"v":0.9890165753543709,"d":"98.90%"},948223068,117095619,462142804,136160898,325981906,130690670,195270178]
["SAMN15398090","Large white","embryo",251019159,{"$f":"D45-8810-663175","v":250347174},150,25.1019159,126910556,102462641,16539143,5106819,{"v":0.9796556604669368,"d":"97.97%"},229373197,8546704,9637339,1833447,7803892,4355771,3446797]
["SAMN15398091","Large white","embryo",171167614,{"$f":"D46-5890-630111","v":170531613},150,17.1167614,83716529,51842178,9158796,26450111,{"v":0.8454724560219669,"d":"84.55%"},135558707,4251136,4119617,905544,3214073,1853133,1360247]
["SAMN15398092","Large white","embryo",401166834,{"$f":"D47-3946-86705","v":401076183},150,40.1166834,187701175,177280225,30814066,5371368,{"v":0.9866106379073202,"d":"98.66%"},364981400,30133072,81925286,14010301,67914985,39679185,28169533]
["SAMN15398093","Large white","embryo",137379128,{"$f":"D48-1350-57908","v":137319870},150,13.7379128,63028215,61440804,10808087,2102022,{"v":0.9846991167391891,"d":"98.47%"},124469019,15979773,59363931,10554960,48808971,25109608,23677153]
["SAMN15398094","Large white","embryo",228991134,{"$f":"D49-2573-51405","v":228937156},150,22.8991134,125249879,86071492,14000703,3669060,{"v":0.9839772835921237,"d":"98.40%"},211321371,7842515,12345755,711301,11634454,7805037,3823904]
["SAMN15398095","Large white","embryo",202896435,{"$f":"D50-38209-94294","v":202763932},150,20.2896435,104670506,81813098,13584548,2828283,{"v":0.9860604598597309,"d":"98.61%"},186483604,20728717,87518905,12010363,75508542,35701023,39798947]
["SAMN15398096","Large white","embryo",272994315,{"$f":"D51-2322865-3913035","v":266758415},150,27.2994315,134556657,113085115,18183212,7169331,{"v":0.9737381674046949,"d":"97.37%"},247641772,9413367,13385051,1730290,11654761,6445670,5207071]
["SAMN15398097","Large white","embryo",101972253,{"$f":"D52-12483-34137","v":101925633},150,10.1972253,56101456,37921946,6095303,1853548,{"v":0.9818230161100785,"d":"98.18%"},94023402,7373081,17951969,1490634,16461335,11063295,5394870]
["SAMN15398098","Large white","embryo",216936859,{"$f":"D53-84-71812","v":216864963},150,21.6936859,117370440,83183787,12857120,3525512,{"v":0.9837486722346247,"d":"98.37%"},200554227,17160553,54263819,3730806,50533013,31152579,19373648]
["SAMN15398099","Large white","embryo",127917719,{"$f":"D54-16766-45244","v":127855709},150,12.7917719,73386055,45725346,6955438,1850880,{"v":0.9855306988393062,"d":"98.55%"},119111401,6373093,12725484,965860,11759624,7844680,3912465]
["SAMN15398100","Large white","embryo",221842593,{"$f":"D55-9115-64790","v":221768688},150,22.1842593,124020183,80835987,13926541,3059882,{"v":0.9862069679288323,"d":"98.62%"},204856170,20274661,77483092,10150562,67332530,29916118,37408715]
["SAMN15398101","Large white","embryo",196274261,{"$f":"D56-7874-65467","v":196200920},150,19.6274261,100315280,78363993,13335932,4259056,{"v":0.978300486379108,"d":"97.83%"},178679273,9611544,17459119,1225963,16233156,7734397,8497075]
["SAMN15398102","Large white","embryo",185721789,{"$f":"D57-12458-63408","v":185645923},150,18.5721789,94936331,76415687,11878264,2491507,{"v":0.986584735084584,"d":"98.66%"},171352018,11969263,29860179,5252945,24607234,12101728,12503067]
["SAMN15398103","Large white","embryo",348569920,{"$f":"D58-13732-80185","v":348476003},150,34.856992,183760068,135201918,23422845,6185089,{"v":0.982255815418611,"d":"98.23%"},318961986,26131738,68004586,12941296,55063290,30186744,24838950]
["SAMN15398104","Large white","embryo",316528813,{"$f":"D59-23325-193677","v":316311811},150,31.6528813,149589527,138633374,23580298,4725614,{"v":0.9850705092051131,"d":"98.51%"},288222901,22148756,53275836,10158829,43117007,26527348,16573297]
["SAMN15398105","Large white","embryo",266438792,{"$f":"D60-2682-129074","v":266307036},150,26.6438792,129021660,114415968,19475467,3525697,{"v":0.9867673285352532,"d":"98.68%"},243437628,21083074,58029820,10500730,47529090,29336522,18182151]
["SAMN15398106","Large white","embryo",536846174,{"$f":"D61-88628-4013","v":536753533},150,53.6846174,256409135,230114841,45121164,5201034,{"v":0.9903118728382704,"d":"99.03%"},486523976,70847345,329877088,43113615,286763473,152594065,134155780]
["SAMN15398107","Large white","embryo",445601960,{"$f":"D62-6312-88801","v":445506847},150,44.560196,212407220,190776580,38425476,3992684,{"v":0.9910397970421854,"d":"99.10%"},403183800,60802595,293255809,37587226,255668583,134190711,121463621]
["SAMN15398119","Large white","embryo",270169184,{"$f":"D63-34711-366154","v":269768319},150,27.0169184,132777207,114405159,19240671,3746147,{"v":0.9861340699759451,"d":"98.61%"},247182366,9836389,15150756,2398739,12752017,6274167,6476135]
["SAMN15398120","Large white","embryo",187004959,{"$f":"D64-23743-309617","v":186671599},150,18.7004959,94684436,76537312,12726187,3057024,{"v":0.9836527115839746,"d":"98.37%"},171221748,6967468,11218577,1956473,9262104,4633469,4627663]
["SAMN15870115","bamaxiang","adipose",587725218,{"$f":"D65-148384","v":587576834},150,58.7725218,217194510,300918718,60570428,9041562,{"v":0.9846160046853732,"d":"98.46%"},518113228,85499244,321285349,118851097,202434252,73198307,129223912]
["SAMN15870116","bamaxiang","adipose",596335021,{"$f":"D66-17112","v":596317909},150,59.6335021,206249311,319099023,62415826,8570861,{"v":0.9856274397810354,"d":"98.56%"},525348334,87515163,340769548,106569915,234199633,71223648,162960482]
["SAMN15870117","bamaxiang","adipose",694831448,{"$f":"D67-13090","v":694818358},150,{"$f":"2*D67*F67/(3*1000000000)","v":69.4831448},278570356,329495255,70984538,15781299,{"$f":"1-(K67/D67)","v":{"v":0.9772875867299546,"d":"97.73%"}},608065611,96395526,367752532,125294588,242457944,76551731,165897197]
["SAMN15870118","bamaxiang","adipose",662927596,{"$f":"D68-130025","v":662797571},150,66.2927596,254113757,321199680,63466066,24148093,{"v":0.9635735589441354,"d":"96.36%"},575313437,90854086,372010390,123629725,248380665,80585346,167787635]
["SAMN15870119","bamaxiang","adipose",722765614,{"$f":"D69-20895","v":722744719},150,72.2765614,238443493,398165707,76962064,9194350,{"v":0.9872789327246551,"d":"98.73%"},636609200,106415062,434457621,132258677,302198944,130847070,171329753]
["SAMN15870120","bamaxiang","adipose",569145633,{"$f":"D70-16435","v":569129198},150,56.9145633,211149756,290452050,59880239,7663588,{"v":0.9865349261144204,"d":"98.65%"},501601806,82911428,336438757,114148742,222290015,62782216,159507600]
["SAMN17833780","Luchuan","embryo",1783211741,{"$f":"D71-562715","v":1782649026},100,118.88078273333333,1324993669,318185279,124023087,16009706,{"v":0.9910219826216364,"d":"99.10%"},1643178948,337069543,1183134167,562795129,620339038,172369372,447807630]
["SAMN17833783","Luchuan","embryo",1601913166,{"$f":"D72-562715","v":1601350451},100,106.79421106666666,1132866826,330064705,122851894,16129741,{"v":0.9899309517255069,"d":"98.99%"},1462931531,313934106,877502360,467873248,409629112,127546189,282023527]
["SAMN17833785","Luchuan","embryo",1474893705,{"$f":"D73-522349","v":1474371356},100,{"v":98.326247,"d":"98.33"},981641312,359923977,119421284,13907132,{"v":0.9905707564193583,"d":"99.06%"},1341565289,284867072,765171623,394886151,370285472,125891673,244352584]

{"sheet":"Table S3","index":2,"n_rows":26,"n_cols":7,"rows_kept":26,"merged":[[0,0,0,6]]}
["Table S3  Summary statistics of TAD results for 24 flittered samples"]
["Sample","breed","tissue","number","max length","average length","coverage"]
["SAMEA7390796","Large white","muscle",971,8800000,1828530,0.72908]
["SAMEA7390798","Large white","muscle",993,5900000,1699240,0.692882]
["SAMEA7390799","Large white","muscle",940,84500000,1774890.0188010794,0.965071]
["SAMN09690999","Large white","ear",1077,6500000,1604270,0.709492]
["SAMN09691000","Large white","ear",1055,6500000,1572090,0.681056]
["SAMN09691001","Rongchang","ear",1054,8800000,1710340,0.740249]
["SAMN09691002","Rongchang","ear",1002,8800000,1767070,0.727068]
["SAMN09691004","Large white","adipose",983,5800000,1376400,0.555587]
["SAMN09691005","Large white","adipose",1016,7150000,1751970,0.730927]
["SAMN09691006","bamaxiang","liver",932,11000000,1614570,0.86024]
["SAMN09691007","bamaxiang","liver",878,17450000,2155870,0.777267]
["SAMN09691009","bamaxiang","liver",939,10450000,1857720,0.716309]
["SAMN09691010","bamaxiang","liver",933,11100000,1924970,0.737498]
["SAMN09691011","bamaxiang","liver",966,11150000,1735460,0.688406]
["SAMN09691012","bamaxiang","liver",1012,10400000,1748570,0.726636]
["SAMN13676582","Large white","muscle",1004,9000000,1786800,0.736656]
["SAMN14422843","Meishan","muscle",1017,6400000,1638540,0.68428]
["SAMN15398106","Large white","embryo",1065,5650000,1471360,0.643463]
["SAMN15870115","bamaxiang","adipose",1036,6250000,1583540,0.673665]
["SAMN15870116","bamaxiang","adipose",1034,6650000,1449790,0.987656]
["SAMN15870117","bamaxiang","adipose",1047,7100000,1674930,0.720107]
["SAMN15870118","bamaxiang","adipose",1019,9600000,1734940,0.725959]
["SAMN15870119","bamaxiang","adipose",1035,6800000,1660970,0.70592]
["SAMN15870120","bamaxiang","adipose",1034,9700000,1693180,0.718916]

{"sheet":"Table S4","index":3,"n_rows":65,"n_cols":4,"rows_kept":65,"merged":[[0,0,0,3]]}
["TableS4  conserved TAD within  for all individuals"]
["chr","start","end","TADs count"]
[1,2750000,3350000,24]
[1,3450000,4950000,24]
[1,5200000,6550000,24]
[1,12700000,13300000,24]
[1,17650000,18300000,24]
[1,21750000,22650000,24]
[1,23250000,25300000,24]
[1,26350000,27150000,24]
[1,32050000,33050000,24]
[1,34450000,35450000,24]
[1,36100000,36900000,24]
[1,38050000,39100000,24]
[1,40300000,41050000,24]
[1,41400000,42050000,24]
[1,45500000,48550000,24]
[1,56050000,57000000,24]
[1,58850000,60200000,24]
[1,62650000,63350000,24]
[1,64850000,66150000,24]
[1,66750000,67500000,24]
[1,68550000,68700000,24]
[1,71650000,72500000,24]
[1,78300000,79850000,24]
[1,80600000,81250000,24]
[1,83000000,83950000,24]
[1,84000000,85950000,24]
[1,86300000,87300000,24]
[1,93950000,95150000,24]
[1,98300000,98950000,24]
[1,101650000,102300000,24]
[1,104600000,105950000,24]
[1,201800000,203000000,24]
[1,226500000,227450000,24]
[1,231800000,235550000,24]
[1,257900000,259400000,24]
[2,96100000,97450000,24]
[2,118150000,119200000,24]
[3,60400000,62000000,24]
[3,78700000,79900000,24]
[4,78200000,79150000,24]
[5,21850000,22600000,24]
[6,36750000,37550000,24]
[7,5500000,7250000,24]
[7,42450000,43650000,24]
[7,90250000,91050000,24]
[8,39200000,40950000,24]
[9,82950000,84000000,24]
[9,90000000,90800000,24]
[10,37050000,38150000,24]
[11,43200000,44800000,24]
[11,66950000,67750000,24]
[12,36750000,37400000,24]
[13,62800000,63250000,24]
[13,95900000,96950000,24]
[13,186850000,187700000,24]
[14,57500000,58750000,24]
[14,98950000,99550000,24]
[15,57500000,59100000,24]
[15,111650000,112550000,24]
[16,29150000,29900000,24]
[16,66150000,67200000,24]
[17,55650000,56700000,24]
[18,29350000,29950000,24]

{"sheet":"Table S5","index":4,"n_rows":268,"n_cols":4,"rows_kept":268,"merged":[[0,0,0,3]]}
["TableS5 Each comparison specific TAD region"]
[null,"start","end","comparison"]
[1,27750000,28900000,"LargeWhite.vs.Rongchang"]
[1,29000000,31000000,"LargeWhite.vs.Rongchang"]
[1,31200000,31900000,"LargeWhite.vs.Rongchang"]
[1,31200000,33250000,"LargeWhite.vs.Rongchang"]
[1,32000000,33250000,"LargeWhite.vs.Rongchang"]
[1,33800000,35600000,"LargeWhite.vs.Rongchang"]
[1,76900000,78000000,"LargeWhite.vs.Rongchang"]
[1,78100000,79850000,"LargeWhite.vs.Rongchang"]
[1,79950000,81650000,"LargeWhite.vs.Rongchang"]
[1,98100000,99000000,"LargeWhite.vs.Rongchang"]
[1,98200000,99000000,"LargeWhite.vs.Rongchang"]
[2,120250000,122850000,"LargeWhite.vs.Rongchang"]
[2,123350000,124250000,"LargeWhite.vs.Rongchang"]
[2,127100000,128100000,"LargeWhite.vs.Rongchang"]
[2,127100000,129650000,"LargeWhite.vs.Rongchang"]
[2,127150000,128100000,"LargeWhite.vs.Rongchang"]
[2,33950000,36700000,"LargeWhite.vs.Rongchang"]
[2,35500000,36650000,"LargeWhite.vs.Rongchang"]
[2,37200000,38750000,"LargeWhite.vs.Rongchang"]
[2,84450000,85350000,"LargeWhite.vs.Rongchang"]
[2,87100000,88200000,"LargeWhite.vs.Rongchang"]
[2,88250000,89000000,"LargeWhite.vs.Rongchang"]
[2,60300000,65350000,"LargeWhite.vs.Bamaxiang"]
[2,65350000,67100000,"LargeWhite.vs.Bamaxiang"]
[2,67100000,76450000,"LargeWhite.vs.Bamaxiang"]
[2,76450000,80100000,"LargeWhite.vs.Bamaxiang"]
[3,118250000,120050000,"LargeWhite.vs.Rongchang"]
[3,120150000,121000000,"LargeWhite.vs.Rongchang"]
[3,120350000,121800000,"LargeWhite.vs.Rongchang"]
[3,121050000,121800000,"LargeWhite.vs.Rongchang"]
[3,121850000,125100000,"LargeWhite.vs.Rongchang"]
[3,123900000,124950000,"LargeWhite.vs.Rongchang"]
[3,125750000,126750000,"LargeWhite.vs.Rongchang"]
[3,27600000,34150000,"LargeWhite.vs.Bamaxiang"]
[4,109950000,111250000,"LargeWhite.vs.Rongchang"]
[4,112000000,113500000,"LargeWhite.vs.Rongchang"]
[4,112000000,115200000,"LargeWhite.vs.Rongchang"]
[4,112500000,113400000,"LargeWhite.vs.Rongchang"]
[4,113550000,115200000,"LargeWhite.vs.Rongchang"]
[4,115250000,116900000,"LargeWhite.vs.Rongchang"]
[4,21950000,23350000,"LargeWhite.vs.Rongchang"]
[4,24900000,27800000,"LargeWhite.vs.Rongchang"]
[4,25200000,26100000,"LargeWhite.vs.Rongchang"]
[4,26200000,27800000,"LargeWhite.vs.Rongchang"]
[4,58050000,60450000,"LargeWhite.vs.Rongchang"]
[4,61850000,62800000,"LargeWhite.vs.Rongchang"]
[4,63700000,64650000,"LargeWhite.vs.Rongchang"]
[4,64650000,65400000,"liver.vs.vadipose"]
[4,66550000,67250000,"liver.vs.vadipose"]
[4,52100000,53050000,"adipose.vs.muscle"]
[4,108000000,109600000,"ear.vs.muscle"]
[4,112500000,113400000,"ear.vs.muscle"]
[4,113550000,115200000,"ear.vs.muscle"]
[4,3050000,4050000,"ear.vs.muscle"]
[4,3100000,4150000,"ear.vs.muscle"]
[4,87700000,91350000,"LargeWhite.vs.Bamaxiang"]
[4,91350000,96800000,"LargeWhite.vs.Bamaxiang"]
[4,96800000,99300000,"LargeWhite.vs.Bamaxiang"]
[5,53900000,56600000,"LargeWhite.vs.Rongchang"]
[5,57900000,59550000,"LargeWhite.vs.Rongchang"]
[5,59650000,60950000,"LargeWhite.vs.Rongchang"]
[5,33850000,35650000,"adipose.vs.muscle"]
[5,33900000,34800000,"adipose.vs.muscle"]
[5,33850000,34800000,"ear.vs.muscle"]
[5,33850000,35700000,"ear.vs.muscle"]
[5,8750000,16800000,"LargeWhite.vs.Bamaxiang"]
[6,136150000,137150000,"adipose.vs.ear"]
[6,138450000,140750000,"adipose.vs.ear"]
[6,112700000,113500000,"LargeWhite.vs.Rongchang"]
[6,114800000,115650000,"LargeWhite.vs.Rongchang"]
[6,117050000,117950000,"LargeWhite.vs.Rongchang"]
[6,129850000,133900000,"LargeWhite.vs.Rongchang"]
[6,132400000,133900000,"LargeWhite.vs.Rongchang"]
[6,136100000,137300000,"LargeWhite.vs.Rongchang"]
[7,104300000,109700000,"LargeWhite.vs.Rongchang"]
[7,108150000,109700000,"LargeWhite.vs.Rongchang"]
[7,101850000,103700000,"ear.vs.muscle"]
[8,105150000,109400000,"LargeWhite.vs.Rongchang"]
[8,105200000,107900000,"LargeWhite.vs.Rongchang"]
[8,112800000,113400000,"LargeWhite.vs.Rongchang"]
[8,114050000,117350000,"LargeWhite.vs.Rongchang"]
[8,114250000,115400000,"LargeWhite.vs.Rongchang"]
[8,114250000,115500000,"LargeWhite.vs.Rongchang"]
[8,115550000,116150000,"LargeWhite.vs.Rongchang"]
[8,91500000,93000000,"LargeWhite.vs.Rongchang"]
[8,91500000,93050000,"LargeWhite.vs.Rongchang"]
[8,93250000,95800000,"LargeWhite.vs.Rongchang"]
[8,125750000,128700000,"ear.vs.muscle"]
[8,125800000,128750000,"ear.vs.muscle"]
[8,126400000,127350000,"ear.vs.muscle"]
[8,126400000,127400000,"ear.vs.muscle"]
[8,128750000,129550000,"ear.vs.muscle"]
[8,130600000,131300000,"ear.vs.muscle"]
[8,131400000,132300000,"ear.vs.muscle"]
[8,131400000,133850000,"ear.vs.muscle"]
[8,131450000,132350000,"ear.vs.muscle"]
[8,15250000,17000000,"ear.vs.muscle"]
[8,16200000,17000000,"ear.vs.muscle"]
[8,17200000,18450000,"ear.vs.muscle"]
[8,17200000,19050000,"ear.vs.muscle"]
[8,17250000,18450000,"ear.vs.muscle"]
[8,19350000,25500000,"ear.vs.muscle"]
[8,19550000,20550000,"ear.vs.muscle"]
[8,19650000,20550000,"ear.vs.muscle"]
[8,20300000,25850000,"ear.vs.muscle"]
[8,20600000,22550000,"ear.vs.muscle"]
[8,20600000,22650000,"ear.vs.muscle"]
[8,6450000,9600000,"ear.vs.muscle"]
[8,65450000,67350000,"ear.vs.muscle"]
[8,6550000,8400000,"ear.vs.muscle"]
[8,6650000,8400000,"ear.vs.muscle"]
[8,67500000,68300000,"ear.vs.muscle"]
[8,67550000,68300000,"ear.vs.muscle"]
[8,67550000,69350000,"ear.vs.muscle"]
[8,67550000,69400000,"ear.vs.muscle"]
[8,68350000,69300000,"ear.vs.muscle"]
[8,68350000,69350000,"ear.vs.muscle"]
[8,71600000,74450000,"ear.vs.muscle"]
[8,71650000,74450000,"ear.vs.muscle"]
[8,71800000,72900000,"ear.vs.muscle"]
[8,73050000,74150000,"ear.vs.muscle"]
[8,73100000,74100000,"ear.vs.muscle"]
[8,73300000,74000000,"ear.vs.muscle"]
[8,76250000,77850000,"ear.vs.muscle"]
[8,76300000,77900000,"ear.vs.muscle"]
[8,76550000,77850000,"ear.vs.muscle"]
[8,79000000,80850000,"ear.vs.muscle"]
[8,79500000,80800000,"ear.vs.muscle"]
[8,79550000,80800000,"ear.vs.muscle"]
[8,82500000,83250000,"ear.vs.muscle"]
[8,8450000,9200000,"ear.vs.muscle"]
[9,109950000,113600000,"LargeWhite.vs.Rongchang"]
[9,110250000,111650000,"LargeWhite.vs.Rongchang"]
[9,111750000,113600000,"LargeWhite.vs.Rongchang"]
[9,111800000,112550000,"LargeWhite.vs.Rongchang"]
[9,114000000,114900000,"LargeWhite.vs.Rongchang"]
[9,13000000,15850000,"LargeWhite.vs.Rongchang"]
[9,14600000,15300000,"LargeWhite.vs.Rongchang"]
[9,17950000,18600000,"LargeWhite.vs.Rongchang"]
[9,18650000,19500000,"LargeWhite.vs.Rongchang"]
[9,27000000,32250000,"LargeWhite.vs.Rongchang"]
[9,28450000,31550000,"LargeWhite.vs.Rongchang"]
[9,33800000,35850000,"LargeWhite.vs.Rongchang"]
[10,59000000,59800000,"LargeWhite.vs.Rongchang"]
[10,62300000,63550000,"LargeWhite.vs.Rongchang"]
[11,52700000,54000000,"adipose.vs.ear"]
[11,52700000,55550000,"adipose.vs.ear"]
[11,55650000,56550000,"adipose.vs.ear"]
[11,57950000,58900000,"adipose.vs.ear"]
[11,59000000,60400000,"adipose.vs.ear"]
[11,37100000,39500000,"LargeWhite.vs.Rongchang"]
[11,37350000,39550000,"LargeWhite.vs.Rongchang"]
[11,41850000,42900000,"LargeWhite.vs.Rongchang"]
[11,42950000,44950000,"LargeWhite.vs.Rongchang"]
[11,51550000,52600000,"LargeWhite.vs.Rongchang"]
[11,52700000,53950000,"LargeWhite.vs.Rongchang"]
[11,52700000,55550000,"LargeWhite.vs.Rongchang"]
[11,52700000,55650000,"LargeWhite.vs.Rongchang"]
[11,55700000,56500000,"LargeWhite.vs.Rongchang"]
[11,56600000,58900000,"LargeWhite.vs.Rongchang"]
[11,56650000,57800000,"LargeWhite.vs.Rongchang"]
[11,59000000,60400000,"LargeWhite.vs.Rongchang"]
[11,59000000,60650000,"LargeWhite.vs.Rongchang"]
[11,61050000,63600000,"LargeWhite.vs.Rongchang"]
[11,61100000,61900000,"LargeWhite.vs.Rongchang"]
[12,27550000,31200000,"LargeWhite.vs.Rongchang"]
[12,28650000,29550000,"LargeWhite.vs.Rongchang"]
[12,35400000,36150000,"LargeWhite.vs.Rongchang"]
[12,27600000,31150000,"ear.vs.muscle"]
[12,29700000,31100000,"ear.vs.muscle"]
[12,31200000,32100000,"ear.vs.muscle"]
[12,31200000,33050000,"ear.vs.muscle"]
[12,32150000,33150000,"ear.vs.muscle"]
[12,32200000,33050000,"ear.vs.muscle"]
[12,32200000,33100000,"ear.vs.muscle"]
[12,33300000,34500000,"ear.vs.muscle"]
[12,33350000,34450000,"ear.vs.muscle"]
[12,55550000,56300000,"ear.vs.muscle"]
[12,56400000,57200000,"ear.vs.muscle"]
[12,57300000,58500000,"ear.vs.muscle"]
[12,31700000,38100000,"LargeWhite.vs.Bamaxiang"]
[12,38100000,43550000,"LargeWhite.vs.Bamaxiang"]
[12,43550000,49750000,"LargeWhite.vs.Bamaxiang"]
[13,101100000,104400000,"adipose.vs.ear"]
[13,103500000,104400000,"adipose.vs.ear"]
[13,103550000,104400000,"adipose.vs.ear"]
[13,138050000,138950000,"adipose.vs.ear"]
[13,139000000,139700000,"adipose.vs.ear"]
[13,165900000,169100000,"adipose.vs.ear"]
[13,167750000,168500000,"adipose.vs.ear"]
[13,169250000,170150000,"adipose.vs.ear"]
[13,185300000,186750000,"adipose.vs.ear"]
[13,186850000,188250000,"adipose.vs.ear"]
[13,57000000,59700000,"adipose.vs.ear"]
[13,58550000,59650000,"adipose.vs.ear"]
[13,59750000,60850000,"adipose.vs.ear"]
[13,60900000,61650000,"adipose.vs.ear"]
[13,60900000,61700000,"adipose.vs.ear"]
[13,101100000,104400000,"LargeWhite.vs.Rongchang"]
[13,101150000,104400000,"LargeWhite.vs.Rongchang"]
[13,101200000,102100000,"LargeWhite.vs.Rongchang"]
[13,101200000,103350000,"LargeWhite.vs.Rongchang"]
[13,102250000,103200000,"LargeWhite.vs.Rongchang"]
[13,103450000,104400000,"LargeWhite.vs.Rongchang"]
[13,103500000,104400000,"LargeWhite.vs.Rongchang"]
[13,162550000,163400000,"LargeWhite.vs.Rongchang"]
[13,162550000,165750000,"LargeWhite.vs.Rongchang"]
[13,164000000,165750000,"LargeWhite.vs.Rongchang"]
[13,165900000,169100000,"LargeWhite.vs.Rongchang"]
[13,165950000,167700000,"LargeWhite.vs.Rongchang"]
[13,166000000,166850000,"LargeWhite.vs.Rongchang"]
[13,167750000,169100000,"LargeWhite.vs.Rongchang"]
[13,169250000,170150000,"LargeWhite.vs.Rongchang"]
[13,138050000,141050000,"liver.vs.vadipose"]
[13,197250000,198150000,"adipose.vs.muscle"]
[13,197250000,198150000,"ear.vs.muscle"]
[13,57000000,59700000,"ear.vs.muscle"]
[13,58550000,59650000,"ear.vs.muscle"]
[13,60900000,61700000,"ear.vs.muscle"]
[13,68850000,73850000,"LargeWhite.vs.Bamaxiang"]
[14,94550000,96300000,"adipose.vs.ear"]
[14,97550000,99550000,"adipose.vs.ear"]
[14,117600000,120250000,"LargeWhite.vs.Rongchang"]
[14,92400000,97000000,"LargeWhite.vs.Rongchang"]
[14,92450000,94000000,"LargeWhite.vs.Rongchang"]
[14,94550000,96300000,"LargeWhite.vs.Rongchang"]
[14,94600000,96350000,"LargeWhite.vs.Rongchang"]
[14,97550000,99550000,"LargeWhite.vs.Rongchang"]
[14,97600000,98800000,"LargeWhite.vs.Rongchang"]
[14,59600000,60650000,"liver.vs.vadipose"]
[14,64200000,67200000,"liver.vs.vadipose"]
[14,100750000,101450000,"ear.vs.muscle"]
[14,100750000,101500000,"ear.vs.muscle"]
[14,101550000,102500000,"ear.vs.muscle"]
[14,106000000,106650000,"ear.vs.muscle"]
[14,112000000,114900000,"ear.vs.muscle"]
[14,115300000,117400000,"ear.vs.muscle"]
[14,115350000,117400000,"ear.vs.muscle"]
[14,115450000,117250000,"ear.vs.muscle"]
[14,115450000,120200000,"ear.vs.muscle"]
[14,115500000,120200000,"ear.vs.muscle"]
[14,115600000,117200000,"ear.vs.muscle"]
[14,117550000,118650000,"ear.vs.muscle"]
[14,117600000,118650000,"ear.vs.muscle"]
[14,120300000,120900000,"ear.vs.muscle"]
[14,120300000,121400000,"ear.vs.muscle"]
[14,45900000,47950000,"LargeWhite.vs.Bamaxiang"]
[14,102550000,105900000,"LargeWhite.vs.Bamaxiang"]
[15,101500000,103450000,"LargeWhite.vs.Rongchang"]
[15,102050000,103400000,"LargeWhite.vs.Rongchang"]
[15,102100000,103400000,"LargeWhite.vs.Rongchang"]
[15,38200000,42200000,"LargeWhite.vs.Rongchang"]
[15,96150000,99900000,"LargeWhite.vs.Rongchang"]
[16,10100000,11200000,"LargeWhite.vs.Rongchang"]
[16,12000000,15600000,"LargeWhite.vs.Rongchang"]
[16,25850000,27650000,"LargeWhite.vs.Rongchang"]
[16,26700000,27600000,"LargeWhite.vs.Rongchang"]
[16,28100000,30100000,"LargeWhite.vs.Rongchang"]
[16,28150000,32250000,"LargeWhite.vs.Rongchang"]
[16,29150000,29950000,"LargeWhite.vs.Rongchang"]
[16,29150000,30050000,"LargeWhite.vs.Rongchang"]
[16,30500000,32000000,"LargeWhite.vs.Rongchang"]
[17,30150000,42800000,"LargeWhite.vs.Bamaxiang"]
[18,33800000,36500000,"adipose.vs.muscle"]
[18,38300000,40350000,"adipose.vs.muscle"]
[18,39450000,40350000,"adipose.vs.muscle"]

{"sheet":"Table S6","index":5,"n_rows":21,"n_cols":3,"rows_kept":21,"merged":[[0,0,0,7]]}
["TableS6 The number of  genes within differential and conserved TADS for each  comparison group "]
["Comparison","GeneCount","type"]
["LargeWhite.vs.Bamaxiang  liver",427,"LargeWhite specific TADs"]
["LargeWhite.vs.Bamaxiang liver",244,"BamaXiang specific TADs"]
["LargeWhite.vs.Bamaxiang liver",11214,"conserve TADs"]
["Ear.vs.Muscle of LargeWhite",542,"Ear specific TADs"]
["Ear.vs.Muscle of LargeWhite",924,"Muscle specific TADs"]
["Ear.vs.Muscle of LargeWhite",10643,"conserve TADs"]
["Adipose.vs.Liver of Bamaxiang",393,"Adipose specific TADs"]
["Adipose.vs.Liver of Bamaxiang",229,"Liver specific TADs"]
["Adipose.vs.Liver of Bamaxiang",19574,"conserve TADs"]
["Ear.vs.Adipoise of LargeWhite",109,"Ear specific TADs"]
["Ear.vs.Adipoise of LargeWhite",364,"Adipose specific TADs"]
["Ear.vs.Adipoise of LargeWhite",62722,"conserve TADs"]
["Adipose.vs.Muscle of LargeWhite",373,"Adipose specific TADs"]
["Adipose.vs.Muscle of LargeWhite",17,"Muscle specific TADs"]
["Adipose.vs.Muscle of LargeWhite",109705,"conserve TADs"]
["LargeWhite.vs.Rongchang ear",401,"LargeWhite specific TADs"]
["LargeWhite.vs.Rongchang ear",312,"Rongchang specific TADs"]
["LargeWhite.vs.Rongchang ear",65457,"conserve TADs"]
["sum",6476,"within total conserve TADs"]

{"sheet":"Table S7","index":6,"n_rows":66,"n_cols":10,"rows_kept":66,"merged":[[0,0,0,9]]}
["TableS7 GO enrichment analysis of genes within  conserve TADs"]
["ID","ONTOLOGY","Description","GeneRatio","BgRatio","pvalue","p.adjust","qvalue","geneID","Count"]
["GO:0007389","BP","pattern specification process","40/846","118/6338",6.93721351895096e-09,2.05202775890569e-05,1.88473137814868e-05,"GSX2/SOX17/MESP2/MESP1/BMPR1A/SMAD4/HOXA9/GBX2/MEF2C/TRA2B/CYP26B1/LBX1/AP1B1/TBX18/OOEP/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/XRCC2/MLLT3/HOXA10/EXT1/DPCD/HOXA3/HOXA4/HOXA2/HOXA5/ROR2/NKX3-2/SMO/PBX1/CCDC39/BMP4/NKX2-1/OTX1/SPRY1/GSC",40]
["GO:0048706","BP","embryonic skeletal system development","18/846","34/6338",4.10457294016649e-08,3.80369636751679e-05,3.49359109090809e-05,"HOXA9/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/EXT1/OSR2/EIF4A3/HOXA3/HOXA4/HOXA2/NKX3-2/SHOX2/PBX1/BMP4/GSC",18]
["GO:0003002","BP","regionalization","35/846","102/6338",4.32630833026616e-08,3.80369636751679e-05,3.49359109090809e-05,"GSX2/SOX17/MESP2/MESP1/BMPR1A/SMAD4/HOXA9/GBX2/MEF2C/TRA2B/CYP26B1/TBX18/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/XRCC2/MLLT3/HOXA10/EXT1/DPCD/HOXA3/HOXA4/HOXA2/HOXA5/ROR2/SMO/PBX1/BMP4/NKX2-1/OTX1/SPRY1/GSC",35]
["GO:0048562","BP","embryonic organ morphogenesis","30/846","81/6338",5.68568807468879e-08,3.80369636751679e-05,3.49359109090809e-05,"HMX3/SOX17/MESP1/HOXA9/GBX2/MEF2C/SOX9/LBX1/ID2/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/OSR2/EIF4A3/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/SMO/FOXL2/CCDC39/BMP4/SPRY2/OTX1/GSC",30]
["GO:0009887","BP","animal organ morphogenesis","66/846","259/6338",6.42950704448409e-08,3.80369636751679e-05,3.49359109090809e-05,"CPE/PLEKHA1/NPY1R/NPY5R/HMX3/COL5A2/GSX2/SOX17/MESP2/MESP1/FGF5/BMPR1A/SMAD4/HOXA9/PRDM1/ADAM15/GBX2/MEF2C/SOX9/CYP26B1/GATA3/ESR1/RTN4/LBX1/RFLNB/LGR4/LIF/ID2/LHX9/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/NKX2-5/HOXA11/MLLT3/EXT1/OSR2/EIF4A3/TRAF6/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/SMO/BARX2/TNFAIP3/FOXL2/PBX1/CCDC39/BMP4/ODAPH/NKX2-1/TSKU/NPPC/SPRY2/FJX1/OTX1/SNX10/GNGT1/SPRY1/GSC",66]
["GO:0009952","BP","anterior/posterior pattern specification","26/846","67/6338",1.48119810005679e-07,6.92281862737768e-05,6.35841958551717E-5,"SOX17/MESP2/MESP1/BMPR1A/SMAD4/HOXA9/GBX2/TBX18/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/XRCC2/MLLT3/HOXA10/HOXA3/HOXA4/HOXA2/HOXA5/ROR2/SMO/PBX1/BMP4/OTX1",26]
["GO:0048598","BP","embryonic morphogenesis","44/846","150/6338",1.63825998619485E-7,6.92281862737768e-05,6.35841958551717E-5,"HMX3/COL5A2/SOX17/MESP2/MESP1/BMPR1A/SMAD4/HOXA9/GBX2/MEF2C/SOX9/CYP26B1/GATA3/LBX1/RGMA/ID2/TBX18/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/HOXA10/EXT1/OSR2/PDX1/EIF4A3/TRAF6/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/SMO/FOXL2/PBX1/CCDC39/BMP4/SPRY2/OTX1/GSC",44]
["GO:0048568","BP","embryonic organ development","37/846","117/6338",1.98906655888322e-07,7.35457360147069e-05,6.75497472168102e-05,"HMX3/VASH2/SOX17/MESP1/BMPR1A/HOXA9/PRDM1/GBX2/MEF2C/TRA2B/SOX9/LBX1/LIF/E2F8/ID2/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/OSR2/EIF4A3/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/SMO/FOXL2/PBX1/CCDC39/BMP4/SPRY2/OTX1/GSC",37]
["GO:0048704","BP","embryonic skeletal system morphogenesis","15/846","27/6338",2.45975010026606e-07,8.08437866287446e-05,7.42528071203124e-05,"HOXA9/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/OSR2/EIF4A3/HOXA3/HOXA4/HOXA2/SHOX2/BMP4/GSC",15]
["GO:0048705","BP","skeletal system morphogenesis","25/846","66/6338",4.4406068525617e-07,0.000131353150698775,1.20644276699597E-4,"PLEKHA1/HOXA9/MEF2C/SOX9/CYP26B1/RFLNB/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/EXT1/OSR2/EIF4A3/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/BARX2/BMP4/NPPC/GSC",25]
["GO:0009792","BP","embryo development ending in birth or egg hatching","43/846","175/6338",3.50218980396713e-05,9.41770676375887E-3,0.00864990610912838,"VASH2/SOX17/MESP2/MESP1/BMPR1A/SMAD4/HOXA9/PRDM1/GBX2/SOX9/GATA3/RCN1/RTN4/RGMA/LIF/E2F8/SBDS/TBX18/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/EVX1/HOXA11/XRCC2/EXT1/OSR2/EIF4A3/TRAF6/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/ACVR1C/ADAM10/SMO/PBX1/BMP4/GSC",43]
["GO:0061333","BP","renal tubule morphogenesis","11/846","22/6338",3.89360738704033e-05,0.00959774220905441,0.00881526374206236,"SMAD4/MEF2C/SOX9/GATA3/LGR4/HOXB7/HOXA11/LGR5/SMO/PBX1/BMP4",11]
["GO:0009790","BP","embryo development","57/846","257/6338",5.01783770282295e-05,0.0100879264906577,0.00926548459926253,"HMX3/COL5A2/VASH2/SOX17/MESP2/MESP1/BMPR1A/SMAD4/HOXA9/PRDM1/GBX2/MEF2C/TRA2B/SOX9/CYP26B1/GATA3/RCN1/RTN4/LBX1/RGMA/LIF/E2F8/SBDS/ID2/TBX18/OOEP/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/EVX1/HOXA11/XRCC2/HOXA10/EXT1/OSR2/PDX1/EIF4A3/TRAF6/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/ACVR1C/ADAM10/SMO/FOXL2/PBX1/CCDC39/BMP4/SPRY2/OTX1/GSC",57]
["GO:0043009","BP","chordate embryonic development","42/846","172/6338",5.0429000687146E-5,0.0100879264906577,0.00926548459926253,"VASH2/SOX17/MESP2/MESP1/BMPR1A/SMAD4/HOXA9/PRDM1/GBX2/SOX9/GATA3/RCN1/RTN4/RGMA/LIF/E2F8/SBDS/TBX18/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/XRCC2/EXT1/OSR2/EIF4A3/TRAF6/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/ACVR1C/ADAM10/SMO/PBX1/BMP4/GSC",42]
["GO:0001501","BP","skeletal system development","34/846","129/6338",5.11558138471488e-05,0.0100879264906577,0.00926548459926253,"PLEKHA1/COL5A2/BMPR1A/HOXA9/HAPLN1/MEF2C/SOX9/CYP26B1/IL17F/RFLNB/SBDS/HOXB6/HOXB7/HOXB2/HOXB1/HOXB5/HOXA11/HOXA10/EXT1/OSR2/EIF4A3/HOXA3/HOXA4/HOXA2/ROR2/NKX3-2/SHOX2/TMEM38B/BARX2/PBX1/BMP4/NPPC/SNX10/GSC",34]
["GO:0006590","BP","thyroid hormone generation","7/846","101/6338",6.13047737470398e-05,0.0109309260694082,0.0100397566581768,"SLC5A5/CGA/GATA3/DUOXA1/DUOX2/DUOX1/TPO",7]
["GO:0001656","BP","metanephros development","11/846","23/6338",6.56900074690183E-5,0.0109309260694082,0.0100397566581768,"SOX17/SMAD4/SOX9/GATA3/LGR4/LIF/HOXA11/OSR2/SMO/BMP4/SPRY1",11]
["GO:0072001","BP","renal system development","22/846","70/6338",6.65167914974132e-05,0.0109309260694082,0.0100397566581768,"SOX17/AGTR1/SMAD4/PRDM1/MEF2C/SOX9/GATA3/LGR4/LIF/AP1B1/TBX18/HOXB7/HOXA11/LGR5/EXT1/OSR2/UPK3A/SMO/PBX1/BMP4/ARL3/SPRY1",22]
["GO:0061326","BP","renal tubule development","12/846","27/6338",7.49969704992757e-05,0.0116758441440451,0.0107239435378743,"SMAD4/MEF2C/SOX9/GATA3/LGR4/LIF/HOXB7/HOXA11/LGR5/SMO/PBX1/BMP4",12]
["GO:0035107","BP","appendage morphogenesis","14/846","37/6338",0.000158805553333104,0.0223688965123486,0.0205452197069043,"BMPR1A/SMAD4/HOXA9/SOX9/CYP26B1/HNF1A/HOXA11/HOXA10/EXT1/OSR2/ROR2/SHOX2/PBX1/BMP4",14]
["GO:0035108","BP","limb morphogenesis","14/846","37/6338",0.000158805553333104,0.0223688965123486,0.0205452197069043,"BMPR1A/SMAD4/HOXA9/SOX9/CYP26B1/HNF1A/HOXA11/HOXA10/EXT1/OSR2/ROR2/SHOX2/PBX1/BMP4",14]
["GO:0072009","BP","nephron epithelium development","12/846","29/6338",1.73301954608669E-4,0.0233012355332929,0.0214015476002381,"SMAD4/MEF2C/SOX9/GATA3/LGR4/LIF/HOXB7/HOXA11/EXT1/SMO/PBX1/BMP4",12]
["GO:0072028","BP","nephron morphogenesis","10/846","22/6338",0.000241062682254198,0.0280720286355372,0.0257833905940434,"SMAD4/SOX9/GATA3/LGR4/LIF/HOXB7/HOXA11/SMO/PBX1/BMP4",10]
["GO:0072088","BP","nephron epithelium morphogenesis","10/846","22/6338",0.000241062682254198,0.0280720286355372,0.0257833905940434,"SMAD4/SOX9/GATA3/LGR4/LIF/HOXB7/HOXA11/SMO/PBX1/BMP4",10]
["GO:0072006","BP","nephron development","12/846","30/6338",0.000254169641092353,0.0280720286355372,0.0257833905940434,"SMAD4/MEF2C/SOX9/GATA3/LGR4/LIF/HOXB7/HOXA11/EXT1/SMO/PBX1/BMP4",12]
["GO:0001655","BP","urogenital system development","23/846","81/6338",0.000255029106042341,0.0280720286355372,0.0257833905940434,"SOX17/AGTR1/SMAD4/PRDM1/MEF2C/SOX9/GATA3/ESR1/LGR4/LIF/AP1B1/TBX18/HOXB7/HOXA11/LGR5/EXT1/OSR2/UPK3A/SMO/PBX1/BMP4/ARL3/SPRY1",23]
["GO:0072080","BP","nephron tubule development","11/846","26/6338",0.00025623555549679,0.0280720286355372,0.0257833905940434,"SMAD4/MEF2C/SOX9/GATA3/LGR4/LIF/HOXB7/HOXA11/SMO/PBX1/BMP4",11]
["GO:0035295","BP","tube development","56/846","267/6338",0.000281941451304084,0.0292555858703451,0.0268704555465502,"VASH2/SOX17/FGF1/MESP1/ANPEP/PLK2/RAB3A/PHF14/BMPR1A/AGTR1/SMAD4/PRDM1/SHC1/EFNA1/GBX2/SPINK2/MEF2C/ACKR3/SOX9/GATA3/IL17F/ESR1/LBX1/RGMA/LGR4/LIF/E2F8/LEPR/ID2/HOXB7/HOXB13/HOXA11/LGR5/ANGPT1/EXT1/SYK/PDX1/TRAF6/HOXA3/VEGFA/NKX3-2/SHOX2/TMEM38B/MET/PIK3CG/SMO/PBX1/CCDC39/BMP4/NKX2-1/BTG1/CLEC14A/SPRY2/ASB4/SPRY1/GSC",56]
["GO:0045165","BP","cell fate commitment","26/846","97/6338",2.86819469317109E-4,0.0292555858703451,0.0268704555465502,"GSX2/SOX17/MESP1/BMPR1A/SMAD4/IL6R/PRDM1/MEF2C/SOX9/CYP26B1/TCF7L2/GATA3/LBX1/WNT4/ID2/TBX18/HOXA11/EXT1/HOXA2/ROR2/SMO/OLIG3/BMP4/NKX2-1/SPRY2/GSC",26]
["GO:0007411","BP","axon guidance","17/846","53/6338",0.000336800181889483,0.0332084979343031,0.0305010971739213,"SMAD4/ETV1/EFNA1/GBX2/EPHA3/B3GNT2/UNC5B/EFNA4/APP/EVX1/EXT1/HOXA2/SMO/OTX2/NKX2-1/EFNB3/SEMA6D",17]
["GO:0014033","BP","neural crest cell differentiation","10/846","23/6338",0.000375964739781259,0.034302427837435,0.0315058418733923,"BMPR1A/SMAD4/GBX2/MEF2C/SOX9/EXT1/SMO/BMP4/GSC/SEMA6D",10]
["GO:0072359","BP","circulatory system development","54/846","258/6338",3.8115849801645E-4,0.034302427837435,0.0315058418733923,"CPE/NPY1R/NPY5R/VASH2/SOX17/FGF1/MESP2/MESP1/ANPEP/PLK2/BMPR1A/AGTR1/SMAD4/PRDM1/BVES/SHC1/ADAM15/EFNA1/GBX2/MEF2C/ACKR3/NFATC2/SOX9/TCF7L2/GATA3/IL17F/RTN4/LBX1/LIF/E2F8/LEPR/AP1B1/TBX18/HOXB13/NKX2-5/ANGPT1/EXT1/SYK/ZFPM2/HOXA3/VEGFA/SHOX2/NEBL/ADAM10/PIK3CG/SMO/SGCD/CCDC39/BMP4/BTG1/REST/CLEC14A/SPRY2/ASB4",54]
["GO:0001822","BP","kidney development","20/846","68/6338",0.000382684286218849,0.034302427837435,0.0315058418733923,"SOX17/AGTR1/SMAD4/PRDM1/MEF2C/SOX9/GATA3/LGR4/LIF/AP1B1/HOXB7/HOXA11/EXT1/OSR2/UPK3A/SMO/PBX1/BMP4/ARL3/SPRY1",20]
["GO:0048863","BP","stem cell differentiation","16/846","49/6338",3.99287942607139E-4,0.0347380510068211,0.0319059498411463,"SOX17/BMPR1A/SMAD4/GBX2/MEF2C/SOX9/ESR1/CHD2/LIF/MLLT3/EXT1/SMO/BMP4/REST/GSC/SEMA6D",16]
["GO:1901700","BP","response to oxygen-containing compound","66/846","332/6338",4.14695951274892E-4,0.0350477321106037,0.0321903834658796,"PLEKHA1/COL5A2/PLSCR3/CYP7A1/POSTN/FOXO1/SLC27A1/GIP/LPL/CD180/CPEB4/HSD3B1/CHRM3/SHC1/PMVK/ADAM15/SLC2A4/EPHA3/MEF2C/TRA2B/SOX9/CYP26B1/ESR1/IRS1/HAVCR2/LYPD1/FYN/GLRB/IGF1R/PLA2G1B/HNF1A/IRF8/RRAGA/EXT1/TNIP3/PDX1/TRAF6/OXR1/FIBIN/HOXA2/LEPROT/ADH5/LITAF/JUN/PIP4K2A/ATP2B1/PID1/MET/NR4A2/ACVR1C/SOCS1/CACNA2D1/DUSP10/SRI/SESN3/SMO/TNFAIP3/SSTR1/IGFBP5/NFKBIA/CAV2/IGFBP2/SMYD3/DUOX2/DUOX1/CFTR",66]
["GO:0097485","BP","neuron projection guidance","17/846","54/6338",0.00043158713326719,0.0353167399619161,0.0324374598205422,"SMAD4/ETV1/EFNA1/GBX2/EPHA3/B3GNT2/UNC5B/EFNA4/APP/EVX1/EXT1/HOXA2/SMO/OTX2/NKX2-1/EFNB3/SEMA6D",17]
["GO:0043583","BP","ear development","18/846","59/6338",0.000453878824940059,0.0353167399619161,0.0324374598205422,"HMX3/GBX2/SOX9/CLRN2/CDH23/GATA3/LGR5/OSR2/HOXA2/ROR2/NKX3-2/ADAM10/BMP4/GABRB2/TSKU/SPRY2/OTX1/GSC",18]
["GO:0007492","BP","endoderm development","8/846","16/6338",4.65636530938043E-4,0.0353167399619161,0.0324374598205422,"COL5A2/SOX17/MESP1/BMPR1A/SMAD4/EXT1/BMP4/NKX2-1",8]
["GO:0042403","BP","thyroid hormone metabolic process","8/846","16/6338",4.65636530938043E-4,0.0353167399619161,0.0324374598205422,"DIO1/SLC5A5/CGA/GATA3/DUOXA1/DUOX2/DUOX1/TPO",8]
["GO:0035239","BP","tube morphogenesis","48/846","225/6338",0.000508489061670756,0.0358521236553319,0.0329291951013885,"VASH2/SOX17/FGF1/MESP1/ANPEP/PLK2/BMPR1A/AGTR1/SMAD4/PRDM1/SHC1/EFNA1/GBX2/MEF2C/ACKR3/SOX9/GATA3/IL17F/ESR1/LBX1/RGMA/LGR4/E2F8/LEPR/ID2/HOXB7/HOXB13/HOXA11/LGR5/ANGPT1/EXT1/SYK/TRAF6/HOXA3/VEGFA/SHOX2/MET/PIK3CG/SMO/PBX1/CCDC39/BMP4/NKX2-1/BTG1/CLEC14A/SPRY2/ASB4/SPRY1",48]
["GO:0030326","BP","embryonic limb morphogenesis","12/846","32/6338",0.00051400935445588,0.0358521236553319,0.0329291951013885,"BMPR1A/SMAD4/HOXA9/CYP26B1/HNF1A/HOXA11/HOXA10/OSR2/ROR2/SHOX2/PBX1/BMP4",12]
["GO:0035113","BP","embryonic appendage morphogenesis","12/846","32/6338",0.00051400935445588,0.0358521236553319,0.0329291951013885,"BMPR1A/SMAD4/HOXA9/CYP26B1/HNF1A/HOXA11/HOXA10/OSR2/ROR2/SHOX2/PBX1/BMP4",12]
["GO:0060675","BP","ureteric bud morphogenesis","9/846","20/6338",5.45417702667321E-4,0.0358521236553319,0.0329291951013885,"SMAD4/SOX9/GATA3/LGR4/HOXB7/HOXA11/SMO/PBX1/BMP4",9]
["GO:0072078","BP","nephron tubule morphogenesis","9/846","20/6338",5.45417702667321E-4,0.0358521236553319,0.0329291951013885,"SMAD4/SOX9/GATA3/LGR4/HOXB7/HOXA11/SMO/PBX1/BMP4",9]
["GO:0072171","BP","mesonephric tubule morphogenesis","9/846","20/6338",5.45417702667321E-4,0.0358521236553319,0.0329291951013885,"SMAD4/SOX9/GATA3/LGR4/HOXB7/HOXA11/SMO/PBX1/BMP4",9]
["GO:0048729","BP","tissue morphogenesis","37/846","162/6338",5.76527282806033E-4,0.0370732109247879,0.0340507303643563,"PALS1/SOX17/MESP2/MESP1/BMPR1A/SMAD4/GBX2/MEF2C/SOX9/GATA3/ESR1/LBX1/CDC42/RGMA/LGR4/LIF/TBX18/HNF1A/HOXB7/HOXB2/NKX2-5/HOXA11/LGR5/MLLT3/EXT1/PDX1/TRAF6/ROR2/SHOX2/MET/SMO/PBX1/CCDC39/BMP4/NKX2-1/SPRY2/SPRY1",37]
["GO:0048667","BP","cell morphogenesis involved in neuron differentiation","30/846","123/6338",0.000597155551957588,0.037582683461501,0.0345186669563837,"TPBG/RAB3A/CDHR1/SMAD4/SIPA1L1/ETV1/BTBD3/EFNA1/GBX2/EPHA3/B3GNT2/UNC5B/RTN4/EFNA4/CDC42/CHODL/FYN/APP/EVX1/EXT1/HOXA2/SHOX2/NR4A2/SMO/OTX2/SLITRK3/NKX2-1/TSKU/EFNB3/SEMA6D",30]
["GO:0048736","BP","appendage development","14/846","42/6338",7.21727026527547E-4,0.0434770268547434,0.0399324601658634,"BMPR1A/SMAD4/HOXA9/SOX9/CYP26B1/HNF1A/HOXA11/HOXA10/EXT1/OSR2/ROR2/SHOX2/PBX1/BMP4",14]
["GO:0060173","BP","limb development","14/846","42/6338",7.21727026527547E-4,0.0434770268547434,0.0399324601658634,"BMPR1A/SMAD4/HOXA9/SOX9/CYP26B1/HNF1A/HOXA11/HOXA10/EXT1/OSR2/ROR2/SHOX2/PBX1/BMP4",14]
["GO:0061564","BP","axon development","27/846","108/6338",0.000734905795381059,0.0434770268547434,0.0399324601658634,"VASH2/RAB3A/SMAD4/ETV1/EFNA1/GBX2/EPHA3/B3GNT2/UNC5B/RTN4/EFNA4/RGMA/CHODL/APP/EVX1/EXT1/HOXA2/SHOX2/NR4A2/CNR1/SMO/OTX2/SLITRK3/NKX2-1/TSKU/EFNB3/SEMA6D",27]
["GO:1901701","BP","cellular response to oxygen-containing compound","52/846","253/6338",0.000761834077670167,0.0441863765048697,0.0405839784203654,"PLEKHA1/COL5A2/PLSCR3/CYP7A1/POSTN/FOXO1/SLC27A1/CD180/CPEB4/CHRM3/SHC1/ADAM15/SLC2A4/EPHA3/MEF2C/TRA2B/SOX9/CYP26B1/ESR1/IRS1/HAVCR2/LYPD1/FYN/IGF1R/PLA2G1B/IRF8/RRAGA/TNIP3/PDX1/TRAF6/OXR1/HOXA2/LEPROT/ADH5/LITAF/JUN/PIP4K2A/ATP2B1/PID1/MET/NR4A2/SOCS1/CACNA2D1/SRI/SESN3/SMO/TNFAIP3/SSTR1/NFKBIA/CAV2/SMYD3/CFTR",52]
["GO:0002009","BP","morphogenesis of an epithelium","32/846","136/6338",0.00077759238375242,0.0442330436757626,0.0406268409405869,"PALS1/SOX17/MESP1/SMAD4/GBX2/MEF2C/SOX9/GATA3/ESR1/LBX1/CDC42/RGMA/LGR4/LIF/TBX18/HOXB7/HOXB2/HOXA11/LGR5/MLLT3/EXT1/PDX1/TRAF6/ROR2/MET/SMO/PBX1/CCDC39/BMP4/NKX2-1/SPRY2/SPRY1",32]
["GO:0072073","BP","kidney epithelium development","13/846","38/6338",0.000841515956511877,0.0469661169690968,0.0431370940170239,"SMAD4/MEF2C/SOX9/GATA3/LGR4/LIF/HOXB7/HOXA11/EXT1/SMO/PBX1/BMP4/SPRY1",13]
["GO:0003007","BP","heart morphogenesis","20/846","72/6338",0.000861671941278102,0.0472004741166783,0.0433523446479295,"CPE/NPY1R/NPY5R/SOX17/MESP2/MESP1/BMPR1A/SMAD4/ADAM15/MEF2C/SOX9/GATA3/RTN4/LBX1/NKX2-5/EXT1/SHOX2/SMO/CCDC39/BMP4",20]
["GO:0071345","BP","cellular response to cytokine stimulus","45/846","213/6338",0.000935968110939877,0.0494679483124377,0.0454349576863463,"SLC12A2/PRKN/SOX17/SRSF7/JAK3/SLC27A1/SMAD4/IL6R/TICAM2/LOC100155760/B3GNT2/SOX9/MSC/LOC100510975/IL17F/VRK2/PRLR/LEPR/IFNE/IRF8/EXT1/SYK/IFN-OMEGA-5/OSM/MRPL15/ADIPOR2/TRAF6/NFIL3/INA/SOCS1/IFNA1/IL22RA2/IFNGR1/SSTR1/IFN-ALPHAOMEGA/NFKBIA/IL15/SPRY2/IFN-DELTA-8/SNX10/ALOX15/DUOX2/DUOX1/ACKR1/GPS2",45]
["GO:0048699","BP","generation of neurons","67/846","348/6338",0.00093651288218273,0.0494679483124377,0.0454349576863463,"PALS1/TPBG/VASH2/PRKN/TAOK1/GSX2/RAB3A/CDHR1/BMPR1A/BEND6/SMAD4/SIPA1L1/ETV1/BTBD3/PRDM1/EFNA1/GBX2/EPHA3/MEF2C/ZNF488/B3GNT2/SOX9/CLRN2/CDH23/UNC5B/RTN4/EFNA4/LBX1/PAQR3/WNT4/CDC42/RGMA/CHODL/FYN/LIF/APP/ID2/LHX9/NKX2-5/EVX1/XRCC2/EXT1/MTMR2/HOXA2/ROR2/VEGFA/AKNA/SHOX2/MET/NR4A2/CNR1/SMO/OLIG3/PBX1/OTX2/BMP4/GABRB2/ARL3/SLITRK3/NKX2-1/TSKU/REST/DNAJB11/GNGT1/DUOXA1/EFNB3/SEMA6D",67]
["GO:0000981","MF","DNA-binding transcription factor activity, RNA polymerase II-specific","82/880","391/6996",1.08118883056355e-06,0.00046626873963655,0.000443104380215354,"HMX3/GSX2/CDX2/SOX17/MESP2/MESP1/NR5A2/SMAD3/FOXO1/ZIC1/ZNF292/SMAD4/HOXA9/ETV1/CREBRF/PRDM1/HOXA13/SIM1/GBX2/MEF2C/ZNF217/NFATC2/SOX9/MSC/NR1H4/CDC5L/IKZF5/ELF5/GATA3/ESR1/PPARA/LBX1/KLF3/PAX6/E2F8/TBX18/DMRTA1/LHX9/HOXB8/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/SHOX2/NR4A2/POU2F1/RORA/BARX2/FOXL2/OLIG3/PBX1/OTX2/NKX2-1/DLX5/NR3C1/REST/ZNF672/OTX1/GSC/CDX1/TP53",82]
["GO:0003700","MF","DNA-binding transcription factor activity","94/880","471/6996",1.74306070892168e-06,0.00046626873963655,0.000443104380215354,"HMX3/ATF3/GSX2/CDX2/SOX17/MESP2/MESP1/NR5A2/SMAD3/FOXO1/ZIC1/ZNF292/SMAD4/HOXA9/ETV1/CREBRF/PRDM1/HOXA13/SIM1/GBX2/MEF2C/NR2F1/ZNF217/NFATC2/SOX9/MSC/NR1H4/TCF7L2/CDC5L/IKZF5/ELF5/GATA3/EHF/ESR1/PPARA/LBX1/KLF3/ARNTL/PAX6/KLF5/E2F8/TBX18/DMRTA1/LHX9/HOXB8/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/CREB5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/TEAD4/FOXM1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/SHOX2/ZNF438/NR4A2/POU2F1/RORA/BARX2/ETS1/FOXL2/OLIG3/PBX1/OTX2/AHR/NKX2-1/DLX5/NR3C1/REST/ZNF672/OTX1/GSC/CDX1/TP53",94]
["GO:0043565","MF","sequence-specific DNA binding","88/880","478/6996",9.6168896324582e-05,0.0149798228373947,0.014235621112566,"HMX3/GSX2/SOX17/MESP2/MESP1/SMAD3/ZNF385D/FOXO1/ZIC1/ORC4/SMAD4/MCM3/HOXA9/ETV1/CREBRF/PRDM1/SIM1/GBX2/MEF2C/NR2F1/RAG1/ZNF217/NFATC2/SOX9/MSC/NR1H4/TCF7L2/CDC5L/IKZF5/ELF5/GATA3/EHF/ESR1/PPARA/LBX1/KLF3/CHD2/E2F8/TBX18/DMRTA1/LHX9/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/FOXM1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/SHOX2/NR4A2/POU2F1/RORA/BARX2/ETS1/FOXL2/OLIG3/PBX1/BASP1/MAEL/OTX2/TAF7/NKX2-1/NR3C1/REST/ZNF672/OTX1/SMYD3/GSC/TP53",88]
["GO:1990837","MF","sequence-specific double-stranded DNA binding","78/880","414/6996",1.11998675419774E-4,0.0149798228373947,0.014235621112566,"HMX3/GSX2/SOX17/MESP2/MESP1/SMAD3/ZNF385D/FOXO1/ZIC1/ORC4/SMAD4/MCM3/HOXA9/CREBRF/PRDM1/SIM1/GBX2/MEF2C/ZNF217/NFATC2/SOX9/MSC/TCF7L2/CDC5L/IKZF5/GATA3/ESR1/LBX1/KLF3/CHD2/E2F8/TBX18/DMRTA1/LHX9/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/FOXM1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/SHOX2/NR4A2/POU2F1/BARX2/FOXL2/OLIG3/PBX1/BASP1/OTX2/TAF7/NKX2-1/NR3C1/REST/ZNF672/OTX1/SMYD3/GSC/TP53",78]
["GO:0000977","MF","RNA polymerase II transcription regulatory region sequence-specific DNA binding","70/880","366/6996",0.000158541838819281,0.0169639767536631,0.016121201715729,"HMX3/SOX17/MESP2/MESP1/SMAD3/FOXO1/ZIC1/SMAD4/HOXA9/CREBRF/PRDM1/SIM1/GBX2/MEF2C/ZNF217/NFATC2/SOX9/MSC/TCF7L2/CDC5L/IKZF5/GATA3/ESR1/KLF3/CHD2/E2F8/TBX18/DMRTA1/LHX9/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/FOXM1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/NR4A2/POU2F1/BARX2/FOXL2/OLIG3/PBX1/OTX2/NKX2-1/NR3C1/REST/ZNF672/OTX1/SMYD3/GSC/TP53",70]
["GO:0003690","MF","double-stranded DNA binding","80/880","437/6996",0.000243901766070968,0.0217479074746614,0.0206674654407505,"HMX3/GSX2/SOX17/HMGB1/MESP2/MESP1/SMAD3/ZNF385D/FOXO1/ZIC1/ORC4/SMAD4/MCM3/HOXA9/CREBRF/PRDM1/SIM1/GBX2/MEF2C/ZNF217/NFATC2/SOX9/MSC/TCF7L2/CDC5L/IKZF5/GATA3/ESR1/LBX1/KLF3/CHD2/E2F8/TBX18/DMRTA1/LHX9/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/FOXM1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/SHOX2/NR4A2/POU2F1/BARX2/FOXL2/OLIG3/PBX1/BASP1/OTX2/TAF7/NKX2-1/CAMTA2/NR3C1/REST/ZNF672/OTX1/SMYD3/GSC/TP53",80]
["GO:0000976","MF","transcription cis-regulatory region binding","72/880","396/6996",0.000612198040283323,0.0409407439439472,0.0389067965074796,"HMX3/SOX17/MESP2/MESP1/SMAD3/FOXO1/ZIC1/SMAD4/HOXA9/CREBRF/PRDM1/SIM1/GBX2/MEF2C/ZNF217/NFATC2/SOX9/MSC/TCF7L2/CDC5L/IKZF5/GATA3/ESR1/KLF3/CHD2/E2F8/TBX18/DMRTA1/LHX9/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/FOXM1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/NR4A2/POU2F1/BARX2/FOXL2/OLIG3/PBX1/BASP1/OTX2/TAF7/NKX2-1/NR3C1/REST/ZNF672/OTX1/SMYD3/GSC/TP53",72]
["GO:0001067","MF","transcription regulatory region nucleic acid binding","72/880","396/6996",0.000612198040283323,0.0409407439439472,0.0389067965074796,"HMX3/SOX17/MESP2/MESP1/SMAD3/FOXO1/ZIC1/SMAD4/HOXA9/CREBRF/PRDM1/SIM1/GBX2/MEF2C/ZNF217/NFATC2/SOX9/MSC/TCF7L2/CDC5L/IKZF5/GATA3/ESR1/KLF3/CHD2/E2F8/TBX18/DMRTA1/LHX9/HOXB6/HNF1A/HOXB7/HOXB2/HOXB1/HOXB5/HOXB13/NKX2-5/EVX1/HOXA11/IRF8/ZNF232/HOXA10/OSR2/PDX1/FOXM1/ZNF280D/HOXA3/HOXA4/HOXA1/HOXA2/HOXA5/NFIL3/LITAF/JUN/NKX3-2/NR4A2/POU2F1/BARX2/FOXL2/OLIG3/PBX1/BASP1/OTX2/TAF7/NKX2-1/NR3C1/REST/ZNF672/OTX1/SMYD3/GSC/TP53",72]

{"sheet":"Table S8","index":7,"n_rows":21,"n_cols":9,"rows_kept":21,"merged":[[0,0,0,8]]}
["TableS8 KEGG enrichment analysis of  genes within conserved TADs"]
["ID","Description","GeneRatio","BgRatio","pvalue","p.adjust","qvalue","geneID","Count"]
["ssc04550","ssc04550","Signaling pathways regulating pluripotency of stem cells","36/1001",{"v":2.12013461973159e-06,"d":"0.000002120"},0.00037962658422683,0.000300938552798397,"102164478/100518649/110255708/397260/100169652/100521912/100519194/397282/397142/100623707/100524517/397491/100327037/100514152/399503/397350/654298/100521817/100626947/100622559/100516268/100144508/100520162/397202/100153248/100520800/100152307/100156756/595111/100113425/100739510/100286863/100337677/100520754/100520485/448810",36]
["ssc05206","ssc05206","MicroRNAs in cancer","56/1001",{"v":2.34337397670883e-06,"d":"0.000002343"},0.00037962658422683,0.000300938552798397,"100316593/100316578/100520187/110255858/100152815/100625479/102166564/100498709/100517207/100498761/100525716/100623707/100156321/100155923/100144501/100498717/100525150/100316550/100170412/100526401/104796810/100498733/100316595/100154710/100512686/100620940/100316559/100505387/100316549/100316585/100498797/100498784/100622559/100498766/100512677/100498702/100337657/397157/100520800/100316571/100192444/100520325/654328/100307052/100498762/397084/397460/100316560/104796130/595110/100739510/100526391/100498783/100157266/448810/397276",56]
["ssc04360","ssc04360","Axon guidance","41/1001",{"v":8.80527877216647e-06,"d":"0.000008805"},0.000772821375728671,0.000612632929427537,"100520864/100621284/100157635/100623707/100155923/100144501/100337658/100134969/733600/100154710/100519549/100518378/100327037/780428/100156429/100517310/100525245/791125/100524585/100523915/100620398/100622559/100154503/100516268/100156454/100154795/397241/654328/100144419/100621675/110261555/100515110/100620243/100739510/497233/100525283/100525766/100624508/100135672/100511850/100626014",41]
["ssc04015","ssc04015","Rap1 signaling pathway","46/1001",{"v":9.54100463862557e-06,"d":"0.000009541"},0.000772821375728671,0.000612632929427537,"100517409/397497/100523181/102166564/100513672/100514949/100157762/100156242/100623707/100155923/100144501/100621398/100621523/397491/100516581/100152679/100154710/100525086/780428/100525245/397350/100521471/397009/100622559/100154503/100514179/100524161/100520932/397157/100520706/100153248/100516976/100192444/654328/100144419/100525120/100520160/100621675/100153223/100622999/102165436/100515047/100739510/100512494/100113360/100517086",46]
["ssc04151","ssc04151","PI3K-Akt signaling pathway","63/1001",{"v":7.05633167975482e-05,"d":"0.000070563"},0.00457250292848112,0.00362472616812668,"100521477/100038030/100516050/100517188/100101925/100520187/397497/102165618/100627508/102166564/100518649/100628113/100513672/100156242/100623707/399522/100516642/100621776/100155923/100144501/397491/396742/100154710/100512686/100515967/100525086/100271930/414916/397350/100515635/100155319/100037284/397009/110261574/445459/100622559/100125540/100152038/100512677/100524161/397202/100520932/397157/100153248/100627126/654328/100525120/100037276/397686/396979/397460/100310806/100515047/100739510/100113360/448810/100626716/100519790/100522202/100156364/100525932/100517086/397276",63]
["ssc04211","ssc04211","Longevity regulating pathway","23/1001",{"v":9.32642336905078e-05,"d":"0.000093264"},5.03626861928742E-3,3.99236368780419E-3,"100151990/100038030/100515868/100516050/110255858/100627508/100519728/100622699/397077/100623707/100739102/397491/100623628/100512686/397350/100515635/100622559/100512677/404694/100526065/100622999/100739510/397276",23]
["ssc04310","ssc04310","Wnt signaling pathway","35/1001",{"v":1.84454576896276E-4,"d":"0.000184455"},0.00798335856615199,0.00632858833704057,"100154087/110255708/397260/100521912/397142/100154048/100135663/100134969/100156044/100153922/100623628/100516581/100152679/100521736/100327037/100518646/100626947/100151994/100157842/100513797/100516268/397241/100520620/100520050/100154208/396913/100621675/100522831/100517445/100157209/100738022/448810/100514516/397276/100626014",35]
["ssc04140","ssc04140","Autophagy - animal","31/1001",{"v":0.000197119964596346,"d":"0.000197120"},0.00798335856615199,0.00632858833704057,"100151990/100516050/100157738/445521/110255858/100622699/100739486/100620224/100623707/100739102/100135663/100621398/110259297/100623628/100621326/100521736/100512686/100516103/397350/100153321/100622559/100157292/100512677/396629/100462716/100462748/100157658/100462744/100462745/100739510/100516293",31]
["ssc04152","ssc04152","AMPK signaling pathway","26/1001",{"v":0.000919681586305983,"d":"0.000919682"},0.0296205235916856,0.0234808569082888,"100151990/100151822/100515868/100516050/100101925/110255858/100627508/100519104/397077/100524447/100623707/396754/100135663/397491/100135661/100512686/396836/397350/100515635/110261574/100622559/100512677/404694/100511343/100739510/403154",26]
["ssc05207","ssc05207","Chemical carcinogenesis - receptor activation","38/1001",{"v":0.000948346225948161,"d":"0.000948346"},0.0296205235916856,0.0234808569082888,"100520187/100627508/100625479/397117/100513672/100156242/100623707/396715/100516491/100152209/397355/396742/100152951/100156773/100623628/396559/397435/397239/100525086/100038005/100515635/100622559/100154503/100498702/100510917/397157/396913/100144419/595111/100622999/100037976/397639/100151828/396654/100739510/100170767/448810/100518733",38]
["ssc04923","ssc04923","Regulation of lipolysis in adipocytes","15/1001",{"v":0.00100563506021155,"d":"0.001005635"},0.0296205235916856,0.0234808569082888,"397547/110255858/654411/100623707/406869/397355/100623628/100512796/100512686/100516060/100622559/100144419/100622999/100739510/396811",15]
["ssc04010","ssc04010","MAPK signaling pathway","50/1001",{"v":1.19530686145873E-3,"d":"0.001195307"},0.0322732852593856,0.0255837608943797,"100517409/100154202/100622172/100622259/100520187/397497/102166564/100038019/100513672/106504229/100156242/100522469/100155923/100144501/100135663/100621398/733590/110259297/397491/100623628/100521736/100154710/100525086/780428/397350/397009/100524741/396629/100524161/397241/397157/100153248/396913/100192444/654328/397377/100525120/100620898/100621675/397084/100517416/100518275/100512654/100525766/100170767/100154962/448810/100518733/100517086/397276",50]
["ssc05418","ssc05418","Fluid shear stress and atherosclerosis","28/1001",{"v":1.49172447585782E-3,"d":"0.001491724"},0.0371783638598412,0.0294721272963003,"397117/106504229/100169652/397282/100623707/100522469/100135663/733590/100152209/396742/100152951/100521736/100622559/100154503/100510917/100152754/397157/396913/100152307/100621675/100113425/100739510/493772/100498783/100125375/404693/396925/397276",28]
["ssc00270","ssc00270","Cysteine and methionine metabolism","14/1001",{"v":0.00169729833313322,"d":"0.001697298"},0.0392803328525117,0.0311384055101132,"100511756/100153230/100525733/100154490/396894/100513890/100511394/100312964/100516774/100626434/100514931/100153856/100525099/733654",14]
["ssc04810","ssc04810","Regulation of actin cytoskeleton","39/1001",{"v":0.00197956960423925,"d":"0.001979570"},0.0427587034515678,0.0338957883111844,"100521477/102167387/110256718/100520151/100520864/100520187/397497/100152815/102166564/100513672/100156242/100623707/100144478/110255240/100621398/100621523/100514879/110259297/100525086/102159531/780428/100525245/396568/100512981/100037284/100622559/100154503/100513228/100524161/100153248/100520446/100192444/100037276/100621675/100511072/100739510/497233/100512494/100525766",39]
["ssc04926","ssc04926","Relaxin signaling pathway","26/1001",{"v":0.00240355543505196,"d":"0.002403555"},0.0444252416676917,0.0352168907307237,"100623130/100152001/100520187/102165618/100038019/397024/100623707/100156321/100623628/100516581/100152679/100521736/100515635/100622559/100154503/397157/396913/100516976/100144419/100622999/100739510/406188/100170767/100626716/100519790/100522202",26]
["ssc04911","ssc04911","Insulin secretion","19/1001",{"v":2.432425761755E-3,"d":"0.002432426"},0.0444252416676917,0.0352168907307237,"397434/100144498/100519132/100621117/397045/100144478/100623628/100516581/100152679/100519705/100515635/100521933/397288/396856/100524640/100622999/100518733/100522212/100626014",19]
["ssc05205","ssc05205","Proteoglycans in cancer","37/1001",{"v":0.00257744715065105,"d":"0.002577447"},0.0444252416676917,0.0352168907307237,"110256718/100520187/100152815/110255708/100517279/100521912/100623707/100621398/100525150/110259297/397491/100623628/397435/100327037/780428/397350/100626947/100157983/100622559/100154503/100516268/100152754/397157/100153248/654328/100525120/397084/100515110/100739510/100525766/100498783/100125375/404693/448810/100626716/397276/100626014",37]
["ssc04659","ssc04659","Th17 cell differentiation","23/1001",0.00260518392495723,0.0444252416676917,0.0352168907307237,"100038019/100518649/100271900/397260/397142/399522/100621776/100134969/396742/100153486/733631/100621326/100037933/100521736/397241/397202/396913/397302/100156637/100152238/396654/406188/100739325",23]

{"sheet":"Table S9","index":8,"n_rows":48,"n_cols":8,"rows_kept":48,"merged":[[0,0,0,9]]}
["Table S9 All genes and significantly differentially expressed genes within differential TADs between adipose and liver of Bamaxiang"]
[null,null,"logFC","logCPM","LR","PValue","FDR","sig"]
[1,"HGD",3.04804381757268,13.7240814465403,67.1185500032103,{"v":2.55661441358021e-16,"d":"2.56E-16"},{"v":1.1760426302469E-14,"d":"1.18E-14"},"Yes"]
[2,"ADPRH",-4.00467649261593,15.0364935028254,49.3142510913981,{"v":2.18072490097582e-12,"d":"2.18E-12"},{"v":5.01566727224438e-11,"d":"5.02E-11"},"Yes"]
[3,"COX17",2.37796469058369,12.246838609275,40.0956220304692,{"v":2.41830354069546E-10,"d":"2.42E-10"},{"v":3.70806542906637E-9,"d":"3.71E-09"},"Yes"]
[4,"NCOA2",5.07771429611893,7.8524209237904,26.8072962378447,{"v":2.24787034153674e-07,"d":"2.25E-07"},{"v":2.58505089276725e-06,"d":"2.59E-06"},"Yes"]
[5,"ILDR1",2.29305312809614,9.76945440190519,21.4695157042908,{"v":3.59498489085615e-06,"d":"3.59E-06"},{"v":2.89565683224362e-05,"d":"2.90E-05"},"Yes"]
[6,"ARHGAP31",1.80048313887294,12.1107536891063,21.374844575215,{"v":3.7769436942308e-06,"d":"3.78E-06"},{"v":2.89565683224362e-05,"d":"2.90E-05"},"Yes"]
[7,"GOLGB1",4.37899892383483,7.76263391215848,16.5022184268952,{"v":4.85931851844028e-05,"d":"4.86E-05"},0.000319326645497504,"Yes"]
[8,"POPDC2",-2.28575686564593,12.2638653678465,16.0269985417903,{"v":6.24456254002217e-05,"d":"6.24E-05"},0.000359062346051275,"Yes"]
[9,"CD86",2.45252435769855,8.84380283675773,13.9942814043737,1.83367484587314E-4,0.000937211587890717,"Yes"]
[10,"SLC15A2",-4.03752940636309,10.0005072164425,10.812813575999,0.00100799996062049,0.00463679981885424,"Yes"]
[11,"IQCB1",-1.2486848203222,12.7539677567373,6.39612292926152,0.01143698625597,0.0478273970704201,"No"]
[12,"GTF2E1",1.13077749595115,10.5408344423394,5.79031474340509,0.01611470379177,0.0617730312017852,"No"]
[13,"C8orf34",1.49249152501732,9.20892690317972,5.42504992042786,0.0198498679139887,0.0702379941571907,"No"]
[14,"LACTB2",3.39216580681249,7.48255670484102,4.73737702342097,0.0295140370545267,0.0969746931791592,"No"]
[15,"XKR9",1.28629044159432,9.43477840647501,4.34834132616813,0.0370450088213643,0.113604693718851,"No"]
[16,"MIX23",0.994367958375797,9.85164209310236,3.17834821461521,0.0746201274415785,0.214532866394538,"No"]
[17,"NR1I2",-1.01166158149839,10.9708956583397,2.98341342312983,0.0841216906041874,0.227623398105448,"No"]
[18,"FAM162A",1.10328415667334,9.28542725675598,2.79446676629618,0.094590228714122,0.241730584491645,"No"]
[19,"CFAP91",0.661475149874654,11.2567421675498,2.19254186178439,0.138680289089569,0.335752278848431,"No"]
[20,"GSK3B",1.15891897838366,8.70354696935282,1.96425714718156,0.161058755111056,0.370435136755429,"No"]
[21,"STXBP5L",0.718743923154967,10.0964427524266,1.73475244161317,0.187805103014249,0.411382606602641,"No"]
[22,"RABL3",0.603244994116447,10.8693066265713,1.6032654239429,0.205441065779748,0.416968551662349,"No"]
[23,"NDUFB4",-0.717043384282078,10.8470810851169,1.58099979507356,0.208616739856897,0.416968551662349,"No"]
[24,"SULF1",1.93283798083111,7.42212111519797,1.52046717414175,0.217548809562965,0.416968551662349,"No"]
[25,"B4GALT4",-1.00768312094445,9.53538352065835,1.36193622377687,0.243202198817445,0.447492045824099,"No"]
[26,"PLA1A",1.18719772472418,8.26328686412444,1.30516258645201,0.253272366713819,0.448097264185987,"No"]
[27,"EAF2",1.11893072177044,8.14304019880946,0.968459961849756,0.325064560486191,0.55381369564314,"No"]
[28,"TRAM1",1.32760628380841,7.41407021126897,0.812976400679944,0.367241737569129,0.603325711720711,"No"]
[29,"TIMMDC1",-1.0028729108085,8.43315290911094,0.51447426100506,0.473208370988158,0.73592588584672,"No"]
[30,"HCLS1",0.904397480218151,8.00648018886137,0.487778886144732,0.484919768891865,0.73592588584672,"No"]
[31,"TMEM39A",-0.473821490120851,9.89764509179428,0.459024456008793,0.498080248160501,0.73592588584672,"No"]
[32,"CASR",0.328732650256417,10.5727552758571,0.390118918705578,0.532236899659335,0.73592588584672,"No"]
[33,"FSTL1",0.493204006442047,9.0832851728464,0.387864377264354,0.533424117144079,0.73592588584672,"No"]
[34,"PREX2",0.36984229357373,9.91864753121304,0.366142124088125,0.545114687641866,0.73592588584672,"No"]
[35,"POGLUT1",-1.37714829277894,7.7678055672444,0.339801869712388,0.559943608796417,0.73592588584672,"No"]
[36,"POLQ",1.05307779828592,7.49011330247206,0.246271916612795,0.619712455737372,0.765469036408051,"No"]
[37,"KPNA1",0.533764892240537,7.40732574806878,0.241130360897555,0.623390898013507,0.765469036408051,"No"]
[38,"UPK1B",0.698088635922872,7.85116614660572,0.20909588448372,0.647476965144725,0.765469036408051,"No"]
[39,"CPA6",0.533449604573955,8.25079947463438,0.207182669356111,0.648984617824217,0.765469036408051,"No"]
[40,"LRRC58",-0.418239458284639,7.89020706820319,0.0537586857745236,0.816647379475696,0.93914448639705,"No"]
[41,"WDR5B",-0.298883235939159,8.14780910085209,0.0418604565890197,0.837885998554109,0.940067217889976,"No"]
[42,"GPR156",-0.0910880193970886,9.7590832681532,0.0175919015060542,0.894482473490184,0.979671280489249,"No"]
[43,"FBXO40",-0.0308849845976694,19.7957686145641,0.00597733156368863,0.938374386812977,0.992495281023597,"No"]
[44,"SLCO5A1",0.086095376927254,7.44844764617621,0.00143245174922724,0.969809077167239,0.992495281023597,"No"]
[45,"CD80",0.0754231181362535,7.65864380198735,1.32899107221846E-3,0.970919296653519,0.992495281023597,"No"]
[46,"PRDM14",0,7.40444060453585,0,1,1,"No"]

{"sheet":"Table S10","index":9,"n_rows":35,"n_cols":8,"rows_kept":35}
["TableS10  all genes and significantly differentially expressed genes within differential TADs  between adipose and muscle of LargeWhite "]
[null,null,"logFC","logCPM","LR","PValue","FDR","sig"]
[1,"DPY19L1",-5.42599295346175,14.2347289946641,504.16681670397,{"v":1.17858938660954E-111,"d":"1.18E-111"},{"v":3.88934497581147e-110,"d":"3.89E-110"},"Yes"]
[2,"MYRFL",-2.20893675622935,15.4539274395395,129.443324680894,{"v":5.42433846602346E-30,"d":"5.42E-30"},{"v":8.95015846893871e-29,"d":"8.95E-29"},"Yes"]
[3,"TBX20",-1.69532127394354,14.4785063367883,62.8355104765798,{"v":2.24710669519954e-15,"d":"2.25E-15"},{"v":2.47181736471949e-14,"d":"2.47E-14"},"Yes"]
[4,"SLC5A3",1.28643708003449,17.3947500363602,43.8904680207164,{"v":3.47276031035097e-11,"d":"3.47E-11"},{"v":2.55537167848636e-10,"d":"2.56E-10"},"Yes"]
[5,"ITSN1",-2.03173053622526,12.9811135139247,43.6776027370926,{"v":3.87177527043388e-11,"d":"3.87E-11"},{"v":2.55537167848636e-10,"d":"2.56E-10"},"Yes"]
[6,"KCNMB4",-1.22219120385854,14.0481012404038,27.5736673448024,{"v":1.51223573536499e-07,"d":"1.51E-07"},{"v":8.31729654450747e-07,"d":"8.32E-07"},"Yes"]
[7,"LGR5",1.90355124796445,12.9126184846927,20.409805105225,{"v":6.25087049499158e-06,"d":"6.25E-06"},{"v":2.94683894763889e-05,"d":"2.95E-05"},"Yes"]
[8,"NPSR1",1.02818628249795,15.2607389130494,17.9397839627856,{"v":2.28004922130303e-05,"d":"2.28E-05"},{"v":9.405203037875e-05,"d":"9.41E-05"},"Yes"]
[9,"BMPER",-1.31192356490551,12.7264655498181,15.4118880455355,{"v":8.64427636142945e-05,"d":"8.64E-05"},3.1695679991908E-4,"Yes"]
[10,"IMMP2L",-0.772391061877005,14.5672824259602,12.1643520239642,0.000487115848268048,0.00160748229928456,"No"]
[11,"HERPUD2",0.599882431153759,18.1062339719052,11.6853403152809,0.000629944631070048,1.88983389321014E-3,"No"]
[12,"ZFC3H1",-0.580562865348874,16.9753688711882,11.1734990480775,0.000829739936788018,0.00228178482616705,"No"]
[13,"SMIM11",-1.03103785192315,13.0070802889804,10.7228000528134,1.05823411180854E-3,0.00268628659151399,"Yes"]
[14,"RAB3IP",0.684545524897756,15.3420168167609,8.5786345678801,0.00340130334764217,0.00777151719590339,"No"]
[15,"KCNE1",0.706313996311775,14.9927938640694,8.5097387123397,3.53250781631972E-3,0.00777151719590339,"No"]
[16,"ATP5PO",-0.459876559742489,15.3562664698746,4.63967560940327,0.0312409071901106,0.0644343710796031,"No"]
[17,"PTPRR",0.634670009424208,12.7179153727164,4.39526424994625,0.0360388743770647,0.0675748938509893,"No"]
[18,"LRRC10",0.657303931135368,12.72443742483,4.33338057221038,0.0373719512400355,0.0675748938509893,"No"]
[19,"TSPAN8",-0.494802229119946,14.1519540529531,4.26493415649918,0.0389067570657211,0.0675748938509893,"No"]
[20,"C21orf140",-0.652834153937234,12.9160730785098,3.58353326112628,0.0583549098263334,0.0962856012134502,"No"]
[21,"CCT2",0.644651403021129,12.7816245836376,2.82089753228233,0.0930443620675447,0.146212568963285,"No"]
[22,"CNOT2",0.358557380612839,12.698777813468,2.61053316241468,0.106156066768974,0.159234100153461,"No"]
[23,"RALYL",0.332766776238415,12.6997440800752,2.35160368658525,0.125154196832124,0.179569065020003,"No"]
[24,"MRPS6",-0.510622146699125,12.7634977441685,2.12105858177898,0.145286095216002,0.199768380922002,"No"]
[25,"KCNE2",-0.496348068713042,12.9670076294421,2.03371216592953,0.153844441620161,0.203074662938613,"No"]
[26,"BBS9",0.267728045971538,12.6928592955691,1.90677663585592,0.167321755174979,0.21236992002978,"No"]
[27,"DPY19L2",-0.425534352964144,12.9288742771529,1.41030746258173,0.235005359414983,0.285732894066458,"No"]
[28,"SMIM34",-0.390049312153833,12.9642592353885,1.36634979190779,0.242440031329116,0.285732894066458,"No"]
[29,"PTPRB",0.196132217761083,16.1050584122451,0.93954770434587,0.332394187670765,0.37824166183225,"No"]
[30,"DOCK4",0.172399280209791,15.0526885599093,0.584567725514432,0.444527467303933,0.488980214034327,"No"]
[31,"RCAN1",0.0490623026077187,16.2586307024847,0.0620423419089065,0.803296577569788,0.855122163219452,"No"]
[32,"BEST3",0.0417906543634805,14.6510669811315,0.0329169914541154,0.856029756016655,0.882780685892175,"No"]
[33,"LRRN3",0.0296786680548509,12.8041962782093,0.000831059442177207,0.977001688349834,0.97700168834983,"No"]

{"sheet":"Table S11","index":10,"n_rows":39,"n_cols":8,"rows_kept":39}
["Table S11 Significantly differentially expressed genes within differential TADs of ear between LargeWhite and Rongchang"]
[null,null,"logFC","logCPM","LR","PValue","FDR","sig"]
[1,"ssc-mir-214",-1.63093474044861,15.4846148370201,23.5713362147782,{"v":1.20367273642427e-06,"d":"1.20E-06"},{"v":4.45358912476979e-05,"d":"4.45E-05"},"Yes"]
[2,"PRRC2C",2.8191162987845,12.728991318013,17.2195303618842,{"v":3.3299537636315e-05,"d":"3.33E-05"},0.000616041446271828,"Yes"]
[3,"GPM6A",-1.44466205766131,12.976715345902,14.1591360400156,0.000167979403227126,0.00207174597313456,"Yes"]
[4,"AASDHPPT",1.15211437059301,13.3693689178744,4.89699537472706,0.026903466192791,0.222575399609084,"No"]
[5,"NBAS",1.05500606420059,13.6797357572394,4.4488626866725,0.0349244985327761,0.222575399609084,"No"]
[6,"LPIN1",1.88363719677414,11.0632414186731,4.39269073623331,0.0360933080447164,0.222575399609084,"No"]
[7,"MYOC",-1.14827264347494,10.9992872873645,3.78379362905204,0.0517512028836277,0.273542072384889,"No"]
[8,"BOLL",0.79105968077527,14.6250859777233,3.01035514213355,0.0827341624645185,0.382645501398398,"No"]
[9,"PLCL1",-0.628970692821332,14.7517765629867,2.6112887224339,0.10610550399365,0.394112374186397,"No"]
[10,"NTSR2",1.37713468580293,11.0512150213504,2.58200654433156,0.108084571722432,0.394112374186397,"No"]
[11,"GRIA4",0.707285968901937,14.5951563210852,2.45260256724151,0.117330188499444,0.394112374186397,"No"]
[12,"LRATD1",0.849093172703293,12.4465803320246,2.3187801451717,0.127820229465859,0.394112374186397,"No"]
[13,"DYNC2H1",0.582135672122888,16.5203539177845,2.0115383682557,0.156106954138424,0.444304407932438,"No"]
[14,"SPCS3",-0.920663655237567,10.8000480618249,1.72349972088753,0.189243176661707,0.500142681177367,"No"]
[15,"CASP1",-0.659430123695009,11.6945618916152,1.59929619795469,0.206002978257361,0.50814067970149,"No"]
[16,"DNM3",0.606689947653187,12.9162538148035,1.40478119878412,0.235924679636154,0.545575821658607,"No"]
[17,"PDGFD",0.612600690906912,12.011789980178,1.11713366936743,0.290536487237782,0.620276596254119,"No"]
[18,"VAMP4",0.638387597819276,11.5916084518849,0.996521493465423,0.318153671084459,0.620276596254119,"No"]
[19,"ASB5",0.482443806693618,13.2568053407174,0.995012251690255,0.318520414292656,0.620276596254119,"No"]
[20,"DDI1",0.416600589390019,14.9277134541425,0.928251718683988,0.335317627308011,0.620337610519821,"No"]
[21,"MIR199A2",0.376269634998555,14.2732202351288,0.714563435541052,0.397933011834518,0.677683570723767,"No"]
[22,"MSANTD4",0.748387063286667,10.6286382786637,0.699514170969024,0.402946987997916,0.677683570723767,"No"]
[23,"SATB2",0.313631329955588,14.1911472494186,0.4969734437732,0.48083299192222,0.77351394352705,"No"]
[24,"SPATA4",0.278143693986817,13.924856828951,0.385239486904709,0.534812404736456,0.824502457302036,"No"]
[25,"AGA",0.228378399403926,15.0317344947305,0.296603612760521,0.586019526811422,0.841736372490603,"No"]
[26,"NEIL3",0.220011368741707,14.5151856437777,0.260016067585624,0.610109116368265,0.841736372490603,"No"]
[27,"C1orf105",0.238260911474442,13.1240382052377,0.254046585183261,0.614240055601251,0.841736372490603,"No"]
[28,"GREB1",0.34413747994426,10.914000242879,0.182555392955891,0.669186311594791,0.88428191175026,"No"]
[29,"TRIB2",0.086798561096328,10.5590797813905,0.0861020642224464,0.76919232624898,0.946031922977368,"No"]
[30,"METTL13",-0.113327292507717,14.9251076740756,0.0774580204774935,0.780772243107311,0.946031922977368,"No"]
[31,"DDX1",0.104918690281505,15.9542301196023,0.0691207182386933,0.79262134087293,0.946031922977368,"No"]
[32,"PIGC",-0.111137788028909,11.9471728429734,0.0473750318240036,0.827695542134199,0.950615451352426,"No"]
[33,"WDR17",0.0380398058230925,10.5559865929284,0.0368130309124979,0.84784621336838,0.950615451352426,"No"]
[34,"SLITRK1",0.0220391532535365,10.5548728105416,0.0211394949371622,0.884399585244897,0.962434842766506,"No"]
[35,"MARS2",0.0350775180476601,18.6588772566467,0.00887073647363223,0.924962527945888,0.977817529542796,"No"]
[36,"RFTN2",0.011801146323352,15.5665804540018,0.000873359115374228,0.976423828717893,0.988863709774346,"No"]
[37,"VEGFC",-0.005650296192912,15.1916199504742,1.94818035993194E-4,0.988863709774346,0.988863709774346,"No"]