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["Table S1. Sequencing statistics and variant analysis  in the eight  C.pepo varieties"]
[null,"total reads","after trimming","mapped","properly paired","singletons","number of SNPs raw:","number of INDELs raw","number of SNPs filtering:","number of INDELs filtering","high impact","low impact","moderate impact","modifier impact","mean DP"]
["BDS",42310260,"86.42%","98.7%","92.14%","0.31%",1265625,119647,527088,58079,"0.073%","1.775%","1.22%","96.932%","28.37"]
["NV",28804339,"85.33%","94.18%","87.2%","0.33%",858209,77535,330231,28723,"0.063%","1.713%","1.162%","97.062%","26.89"]
["OF",42634559,"76.49%","94.04%","87.64%","0.3%",1303068,119608,520450,52108,"0.072%","1.681%","1.155%","97.091%","24.90"]
["SPQ",36477847,"71.79%","98.93%","92.89%","0.27%",1105734,102941,278821,35152,"0.085%","1.101%","0.891%","97.923%","33.25"]
["SI",40377683,"76.84%","90.54%","84.98%","0.27%",1223600,111149,430435,45140,"0.072%","1.544%","1.081%","97.303%","28.81"]
["Whitaker",52915127,"75.52%","93.34%","87.81%","0.29%",2604288,237441,1388453,140218,"0.074%","2.038%","1.383%","96.506%","22.31"]
["381e",39775921,"74.33%","98.18%","91.95%","0.29%",809250,66590,206917,25002,"0.074%","0.511%","0.609%","98.806%","27.42"]
["968Rb",37957336,"76.84%","98.28%","92.59%","0.25%",702253,63417,198565,23318,"0.071%","0.448%","0.519%","98.962%","45.62"]
["8 genomes",{"$nulls":5},4249996,454548,3831907,387243,"0.066%","1.751%","1.178%","97.006%"]
[]
["BDS: Lungo Bianco di Sicilia."]
["NV: Nano verde di Milano."]
["SPQ: San Pasquale."]
["OF: Ortolano di Faenza."]
["SI: Striato d'Italia."]