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{"sheet":"Sheet1","index":0,"n_rows":117,"n_cols":15,"rows_kept":117,"merged":[[0,0,0,8],[64,0,70,3],[74,0,74,2],[74,3,74,5],[74,6,74,7],[95,0,95,8]],"flags":["formulas_cached_only"]}
["Supplementary Table S1 Blastp screeninhg for PtrCSEs with populus genome and proteome"]
["BLASTP 2.2.28+"]
["Database: proteome.ptr.fasta"]
[41,"434 sequences; 15",993,"841 total letters"]
["Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A."]
["Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J."]
["Lipman (1997), \"Gapped BLAST and PSI-BLAST: a new generation of"]
["protein database search programs\", Nucleic Acids Res. 25:3389-3402."]
[]
["Query= AtCSE"]
[]
["Length=332"]
["Sequences producing significant alignments:  "]
["                                                                       "]
["Hits(ID)","Score (Bits) ","  E-Value","Symbol in this study"]
["PT03G05920     ",568,0,"PtrCSE1"]
["PT01G17500        ",561,0,"PtrCSE2"]
["PT11G04650     ",255,{"v":6e-82,"d":"6.00E-82"},"PtrCSE3"]
["PT14G12900 ",206,{"v":7e-63,"d":"7.00E-63"},"PtrCSE7"]
["PT02G20420  ",204,{"v":6e-62,"d":"6.00E-62"},"PtrCSE4"]
["PT17G11480  ",191,{"v":1e-56,"d":"1.00E-56"},"PtrCSE10"]
["PT10G21220  ",187,{"v":1e-55,"d":"1.00E-55"},"PtrCSE5"]
["PT01G46670  ",184,{"v":1e-54,"d":"1.00E-54"},"PtrCSE8"]
["PT08G04000  ",179,{"v":2e-52,"d":"2.00E-52"},"PtrCSE11"]
["PT08G04900  ",178,{"v":3e-52,"d":"3.00E-52"},"PtrCSE6"]
["PT10G12400  ",178,{"v":1e-51,"d":"1.00E-51"},"PtrCSE12"]
["PT10G22230  ",175,{"v":4e-51,"d":"4.00E-51"},"PtrCSE13"]
["PT18G04580  ",145,{"v":1e-39,"d":"1.00E-39"},"PtrCSE17"]
["PT12G04180  ",140,{"v":1e-37,"d":"1.00E-37"},"PtrCSE15"]
["PT15G03190 ",135,{"v":1e-35,"d":"1.00E-35"},"PtrCSE16"]
["PT06G23720  ",134,{"v":2e-35,"d":"2.00E-35"},"PtrCSE9"]
["PT11G16430 ",118,{"v":2e-30,"d":"2.00E-30"},"PtrCSE14"]
["PT04G09970  ",45.4,{"v":2e-05,"d":"2.00E-05"},"PtrCSE18"]
[]
[]
["BlastP for searching sequences used for building HMM model"]
["Query=NP_175685.1"]
["Hits","% identity","Query cover（%）","alignment length","E-value","Score(bits）"]
["gi|15219082|ref|NP_175685.1|;gi|75333553|sp|Q9C942.1|CSE_ARATH;gi|12324637|gb|AAG52273.1|AC019018_10;gi|15450994|gb|AAK96768.1|;gi|30984558|gb|AAP42742.1|;gi|332194728|gb|AEE32849.1|",100,100,332,0,691]
["gi|685314134|ref|XP_009147666.1|",89,99,330,0,617]
["gi|743893529|ref|XP_011040000.1|",83,95,329,0,570]
["gi|948288828|gb|ALM55679.1|",80,99,329,0,568]
["gi|224070855|ref|XP_002303266.1|;gi|222840698|gb|EEE78245.1|",79,99,329,0,568]
["gi|357479505|ref|XP_003610038.1|;gi|355511093|gb|AES92235.1|",83,93,310,0,563]
["gi|224054154|ref|XP_002298118.1|;gi|222845376|gb|EEE82923.1|",80,97,323,0,561]
["gi|702372716|ref|XP_010061948.1|;gi|629103528|gb|KCW68997.1|",80,94,314,0,558]
["gi|948288826|gb|ALM55678.1|",79,97,323,0,556]
["gi|356548571|ref|XP_003542674.1|;gi|947070221|gb|KRH19112.1|",81,93,313,0,556]
["gi|823131097|ref|XP_012456423.1|;gi|763745662|gb|KJB13101.1|",82,93,310,0,552]
["gi|225442797|ref|XP_002285258.1|",78,98,328,0,549]
["gi|470134211|ref|XP_004302949.1|",78,97,328,0,548]
["gi|460379951|ref|XP_004235722.1|",79,96,324,0,540]
["gi|697169260|ref|XP_009593524.1|",79,96,321,0,538]
["gi|565349370|ref|XP_006341666.1|",80,93,312,0,534]
["gi|657971633|ref|XP_008377606.1|",80,93,312,0,531]
["gi|586692035|ref|XP_006843203.1|;gi|548845427|gb|ERN04878.1|",71,92,308,{"v":6.28e-162,"d":"6.28E-162"},468]
["gi|116787875|gb|ABK24677.1|",70,96,323,{"v":6.89e-162,"d":"6.89E-162"},468]
["gi|224286015|gb|ACN40719.1|",69,96,323,{"v":4.21e-161,"d":"4.21E-161"},466]
["gi|255670705|dbj|BAF08169.2|",62,92,312,{"v":5.42e-134,"d":"5.42E-134"},398]
["gi|302798509|ref|XP_002981014.1|;gi|300151068|gb|EFJ17715.1|",51,93,315,{"v":5.66e-105,"d":"5.66E-105"},322]
["gi|302801470|ref|XP_002982491.1|;gi|300149590|gb|EFJ16244.1|",51,93,315,{"v":2.04e-104,"d":"2.04E-104"},321]
[]
["sequences from screening species with high scores, query cover>90%, identity>50%, low E-value(E-100)"]
[]
["# hmmsearch :: search profile(s) against a sequence database\n# HMMER 3.0 (March 2010); http://hmmer.org/\n# Copyright (C) 2010 Howard Hughes Medical Institute.\n# Freely distributed under the GNU General Public License (GPLv3).\n# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\n# query HMM file:                  refHMM.hmm\n# target sequence database:        proteome.atr.fasta\n# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\n\nQuery:       refHMM  [M=323]HMMER 3.0"]
{"$rows_empty":7}
["Query:","dumpclusta  [M=325]"]
["Scores for complete sequences( scores including all domains):"]
["   ---full sequence --- ",null,null,"   ---best 1 domain --- ",null,null,"   ---# dom --- "]
["E-value","score  ","  bias    ","   E-value ","Score","bias","exp  "," N","Sequence","Symbol in this study"]
[{"v":7.7e-203,"d":"7.70E-203"},674,0.1,{"v":8.7e-203,"d":"8.70E-203"},673.8,0.1,1,1,"PT03G05920 ","PtrCSE1"]
[{"v":5.7e-200,"d":"5.70E-200"},664.5,0.1,{"v":6.6e-200,"d":"6.60E-200"},664.3,0,1,1,"PT01G17500","PtrCSE2"]
[{"v":4e-98,"d":"4.00E-98"},329.9,0,{"v":4.7e-98,"d":"4.70E-98"},329.6,0,1,1,"PT11G04650","PtrCSE3"]
[{"v":1.5e-72,"d":"1.50E-72"},245.8,0,{"v":1.9e-72,"d":"1.90E-72"},245.5,0,1,1,"PT02G20420","PtrCSE4"]
[{"v":5.3e-72,"d":"5.30E-72"},244,0,{"v":6.9e-72,"d":"6.90E-72"},243.6,0,1,1,"PT14G12900","PtrCSE7"]
[{"v":1.2e-70,"d":"1.20E-70"},239.6,0,{"v":1.5e-70,"d":"1.50E-70"},239.3,0,1,1,"PT10G21220","PtrCSE5"]
[{"v":5.4e-70,"d":"5.40E-70"},237.4,0,{"v":6.8e-70,"d":"6.80E-70"},237.1,0,1,1,"PT17G11480","PtrCSE10"]
[{"v":1.4e-69,"d":"1.40E-69"},236,0,{"v":1.7e-69,"d":"1.70E-69"},235.7,0,1,1,"PT08G04000","PtrCSE11"]
[{"v":1.3e-68,"d":"1.30E-68"},232.8,0,{"v":1.6e-68,"d":"1.60E-68"},232.5,0,1,1,"PT08G04900","PtrCSE6"]
[{"v":2e-68,"d":"2.00E-68"},232.3,0,{"v":2.4e-68,"d":"2.40E-68"},232,0,1,1,"PT01G46670","PtrCSE8"]
[{"v":2.5e-65,"d":"2.50E-65"},222.1,0,{"v":3e-65,"d":"3.00E-65"},221.8,0,1,1,"PT10G22230","PtrCSE13"]
[{"v":3.5e-61,"d":"3.50E-61"},208.5,0,{"v":4.3e-61,"d":"4.30E-61"},208.2,0,1,1,"PT10G12400","PtrCSE12"]
[{"v":8.2e-45,"d":"8.20E-45"},154.7,0,{"v":1.1e-44,"d":"1.10E-44"},154.2,0,1.1,1,"PT15G03190","PtrCSE16"]
[{"v":9.1e-45,"d":"9.10E-45"},154.5,0,{"v":1.2e-44,"d":"1.20E-44"},154.1,0,1.1,1,"PT12G04180","PtrCSE15"]
[{"v":1.1e-44,"d":"1.10E-44"},154.3,0,{"v":2.2e-44,"d":"2.20E-44"},153.3,0,1.5,1,"PT18G04580","PtrCSE17"]
[{"v":6.2e-41,"d":"6.20E-41"},141.9,0,{"v":1.6e-40,"d":"1.60E-40"},140.6,0,1.5,1,"PT06G23720","PtrCSE9"]
[{"v":1.1e-40,"d":"1.10E-40"},141.1,0.2,{"v":1.3e-31,"d":"1.30E-31"},111.2,0,3,2,"PT11G16430","PtrCSE14"]
[{"v":7.2e-15,"d":"7.20E-15"},56.3,0,{"v":1.2e-10,"d":"1.20E-10"},42.4,0,2.1,2,"PT04G09970","PtrCSE18"]
[]
["protein structure search and classification based on HMM search "]
[" (http://supfam.cs.bris.ac.uk/SUPERFAMILY)"]
["Symbol","alignment start","alignment end","envelope start","envelope end","hmm acc","hmm name","type","hmm start","hmm end","hmm length","bit score","E-value","significance","clan"]
["AtCSE1  ",62,305,61,306,"PF12146.5","Hydrolase_4"," Family",2,238,244,178.8,{"v":9.1e-53,"d":"9.10E-53"},1,"CL0028"]
["PoptrCSE1",54,297,53,298,"PF12146.5","Hydrolase_4","Family",2,238,244,182.9,{"v":5.1e-54,"d":"5.10E-54"},1,"CL0028"]
["PoptrCSE10",81,324,80,324,"PF12146.5","Hydrolase_4","Family",2,239,244,213.3,{"v":2.7e-63,"d":"2.70E-63"},1,"CL0028"]
["PoptrCSE13",60,302,56,302,"PF12146.5","Hydrolase_4","Family",5,239,243,181.8,{"v":1.1e-53,"d":"1.10E-53"},1,"CL0028"]
["PoptrCSE11",58,301,55,301,"PF12146.5","Hydrolase_4","Family",4,239,244,181,{"v":2e-53,"d":"2.00E-53"},1,"CL0028"]
["PoptrCSE8",57,297,56,298,"PF12146.5","Hydrolase_4","Family",2,238,241,195.8,{"v":6.2e-58,"d":"6.20E-58"},1,"CL0028"]
["PoptrCSE7",32,274,31,275,"PF12146.5","Hydrolase_4","Family",2,238,243,218.6,{"v":6.3e-65,"d":"6.30E-65"},1,"CL0028"]
["PoptrCSE5",34,274,33,276,"PF12146.5","Hydrolase_4","Family",2,236,241,222,{"v":6e-66,"d":"6.00E-66"},1,"CL0028"]
["PoptrCSE12",142,384,140,384,"PF12146.5","Hydrolase_4","Family",3,239,243,224.5,{"v":1e-66,"d":"1.00E-66"},1,"CL0028"]
["PoptrCSE15",163,401,162,401,"PF12146.5","Hydrolase_4","Family",2,239,242,253.2,{"v":1.8e-75,"d":"1.80E-75"},1,"CL0028"]
["PoptrCSE14",32,206,24,207,"PF12146.5","Hydrolase_4","Family",51,238,190,112.9,{"v":1.3e-32,"d":"1.30E-32"},1,"CL0028"]
["PoptrCSE18",30,101,29,115,"PF12146.5","Hydrolase_4","Family",2,72,72,46.1,{"v":3.3e-12,"d":"3.30E-12"},1,"CL0028"]
["PoptrCSE4",31,273,30,274,"PF12146.5","Hydrolase_4","Family",2,238,243,222.7,{"v":3.7e-66,"d":"3.70E-66"},1,"CL0028"]
["PoptrCSE16",146,381,144,381,"PF12146.5","Hydrolase_4","Family",3,239,241,238.1,{"v":7.2e-71,"d":"7.20E-71"},1,"CL0028"]
["PoptrCSE6",33,274,33,276,"PF12146.5","Hydrolase_4","Family",1,236,242,216.1,{"v":3.8e-64,"d":"3.80E-64"},1,"CL0028"]
["PoptrCSE17",121,359,120,359,"PF12146.5","Hydrolase_4","Family",2,239,242,243.2,{"v":2e-72,"d":"2.00E-72"},1,"CL0028"]
["PoptrCSE9",127,363,125,363,"PF12146.5","Hydrolase_4","Family",4,239,240,238.3,{"v":6.4e-71,"d":"6.40E-71"},1,"CL0028"]
["PoptrCSE3",60,299,56,300,"PF12146.5","Hydrolase_4","Family",5,238,240,192.6,{"v":5.7e-57,"d":"5.70E-57"},1,"CL0028"]
["PoptrCSE2",54,297,53,298,"PF12146.5","Hydrolase_4","Family",2,238,244,177.1,{"v":3e-52,"d":"3.00E-52"},1,"CL0028"]

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