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["NC_021160.1",62062,".","A","G,ATAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG","2/2","0/1",874.19,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=1,2;AF=0.250,0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485348.3|protein_coding||c.-19485A>G|||||4762|WARNING_TRANSCRIPT_NO_START_CODON,ATAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|upstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485348.3|protein_coding||c.-19485_-19484insTAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|||||4761|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485348.3-1|GENE_exon-XM_004485348.3-1|transcript|rna-XM_004485348.3|protein_coding||c.-4860A>G|||||4762|,ATAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|upstream_gene_variant|MODIFIER|exon-XM_004485348.3-1|GENE_exon-XM_004485348.3-1|transcript|rna-XM_004485348.3|protein_coding||c.-4860_-4859insTAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|||||4761|,G|upstream_gene_variant|MODIFIER|exon-XM_004485349.3-1|GENE_exon-XM_004485349.3-1|transcript|rna-XM_004485349.3|protein_coding||c.-4860A>G|||||4789|,ATAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|upstream_gene_variant|MODIFIER|exon-XM_004485349.3-1|GENE_exon-XM_004485349.3-1|transcript|rna-XM_004485349.3|protein_coding||c.-4860_-4859insTAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|||||4788|,G|upstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485349.3|protein_coding||c.-19485A>G|||||4789|WARNING_TRANSCRIPT_NO_START_CODON,ATAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|upstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485349.3|protein_coding||c.-19485_-19484insTAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|||||4788|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XR_003474485.1-1-exon-XM_004485348.3-1|GENE_exon-XR_003474485.1-1-GENE_exon-XM_004485348.3-1|intergenic_region|GENE_exon-XR_003474485.1-1-GENE_exon-XM_004485348.3-1|||n.62062A>G||||||,ATAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG|intergenic_region|MODIFIER|exon-XR_003474485.1-1-exon-XM_004485348.3-1|GENE_exon-XR_003474485.1-1-GENE_exon-XM_004485348.3-1|intergenic_region|GENE_exon-XR_003474485.1-1-GENE_exon-XM_004485348.3-1|||n.62062_62063insTAACAAGGCAATATTGTTCGTAGGATTCGCAATGAGAAGGAGAATGAAGAGGAGTATGAAGTTTACATAATGAGGGTTAG||||||;BaseQRankSum=-3.224e+00;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=14.236;MLEAC=1,2;MLEAF=0.250,0.500;MQ=37.72;MQRankSum=0.00;QD=31.98;ReadPosRankSum=-5.500e-01;SOR=0.320;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",85967,".","A","G","0/1","0/0",175.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485348.3|protein_coding||c.*19143A>G|||||4420|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485348.3-1|GENE_exon-XM_004485348.3-1|transcript|rna-XM_004485348.3|protein_coding||c.*4618A>G|||||4420|,G|downstream_gene_variant|MODIFIER|exon-XM_004485349.3-1|GENE_exon-XM_004485349.3-1|transcript|rna-XM_004485349.3|protein_coding||c.*4618A>G|||||4420|,G|downstream_gene_variant|MODIFIER|exon-XM_004485350.3-1|GENE_exon-XM_004485350.3-1|transcript|rna-XM_004485350.3|protein_coding||c.*4618A>G|||||4420|,G|downstream_gene_variant|MODIFIER|exon-XM_004485351.3-1|GENE_exon-XM_004485351.3-1|transcript|rna-XM_004485351.3|protein_coding||c.*4618A>G|||||4420|,G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485349.3|protein_coding||c.*19116A>G|||||4420|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485350.3|protein_coding||c.*12006A>G|||||4420|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485351.3|protein_coding||c.*12006A>G|||||4420|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485348.3-1-exon-XM_004485354.3-1|GENE_exon-XM_004485348.3-1-GENE_exon-XM_004485354.3-1|intergenic_region|GENE_exon-XM_004485348.3-1-GENE_exon-XM_004485354.3-1|||n.85967A>G||||||;BaseQRankSum=-3.992e+00;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=11.239;MLEAC=1;MLEAF=0.250;MQ=56.14;MQRankSum=-6.364e+00;QD=4.17;ReadPosRankSum=-4.220e-01;SOR=3.426;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",85982,".","A","G","0/1","0/0",168.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485348.3|protein_coding||c.*19158A>G|||||4435|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485348.3-1|GENE_exon-XM_004485348.3-1|transcript|rna-XM_004485348.3|protein_coding||c.*4633A>G|||||4435|,G|downstream_gene_variant|MODIFIER|exon-XM_004485349.3-1|GENE_exon-XM_004485349.3-1|transcript|rna-XM_004485349.3|protein_coding||c.*4633A>G|||||4435|,G|downstream_gene_variant|MODIFIER|exon-XM_004485350.3-1|GENE_exon-XM_004485350.3-1|transcript|rna-XM_004485350.3|protein_coding||c.*4633A>G|||||4435|,G|downstream_gene_variant|MODIFIER|exon-XM_004485351.3-1|GENE_exon-XM_004485351.3-1|transcript|rna-XM_004485351.3|protein_coding||c.*4633A>G|||||4435|,G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485349.3|protein_coding||c.*19131A>G|||||4435|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485350.3|protein_coding||c.*12021A>G|||||4435|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101489113|gene-LOC101489113|transcript|XM_004485351.3|protein_coding||c.*12021A>G|||||4435|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485348.3-1-exon-XM_004485354.3-1|GENE_exon-XM_004485348.3-1-GENE_exon-XM_004485354.3-1|intergenic_region|GENE_exon-XM_004485348.3-1-GENE_exon-XM_004485354.3-1|||n.85982A>G||||||;BaseQRankSum=-3.845e+00;ClippingRankSum=0.00;DP=74;ExcessHet=3.0103;FS=11.368;MLEAC=1;MLEAF=0.250;MQ=55.84;MQRankSum=-6.122e+00;QD=4.31;ReadPosRankSum=-2.234e+00;SOR=3.477;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",93184,".","A","AGTT","0/0","0/1",54.15,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=AGTT|intron_variant|MODIFIER|exon-XM_004485354.3-1|GENE_exon-XM_004485354.3-1|transcript|rna-XM_004485354.3|protein_coding|4/15|c.606+711_606+712insGTT||||||,AGTT|intron_variant|MODIFIER|exon-XM_004485355.3-1|GENE_exon-XM_004485355.3-1|transcript|rna-XM_004485355.3|protein_coding|4/15|c.606+711_606+712insGTT||||||,AGTT|intron_variant|MODIFIER|exon-XM_004485356.3-1|GENE_exon-XM_004485356.3-1|transcript|rna-XM_004485356.3|protein_coding|4/15|c.606+711_606+712insGTT||||||,AGTT|intron_variant|MODIFIER|exon-XM_012712897.2-1|GENE_exon-XM_012712897.2-1|transcript|rna-XM_012712897.2|protein_coding|4/13|c.606+711_606+712insGTT||||||,AGTT|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485354.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,AGTT|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485355.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,AGTT|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485356.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,AGTT|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_012712897.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.950e-01;ClippingRankSum=0.00;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=59.31;MQRankSum=-3.528e+00;QD=1.87;ReadPosRankSum=-1.267e+00;SOR=1.112;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",93267,".","C","T","0/0","0/1",136.19,"map","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_004485354.3-1|GENE_exon-XM_004485354.3-1|transcript|rna-XM_004485354.3|protein_coding|4/15|c.606+794C>T||||||,T|intron_variant|MODIFIER|exon-XM_004485355.3-1|GENE_exon-XM_004485355.3-1|transcript|rna-XM_004485355.3|protein_coding|4/15|c.606+794C>T||||||,T|intron_variant|MODIFIER|exon-XM_004485356.3-1|GENE_exon-XM_004485356.3-1|transcript|rna-XM_004485356.3|protein_coding|4/15|c.606+794C>T||||||,T|intron_variant|MODIFIER|exon-XM_012712897.2-1|GENE_exon-XM_012712897.2-1|transcript|rna-XM_012712897.2|protein_coding|4/13|c.606+794C>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485354.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485355.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485356.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_012712897.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=2.57;ClippingRankSum=0.00;DP=97;ExcessHet=3.0103;FS=3.646;MLEAC=1;MLEAF=0.250;MQ=59.60;MQRankSum=-5.062e+00;QD=2.39;ReadPosRankSum=1.33;SOR=0.223;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",93292,".","T","C","0/0","0/1",96.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_004485354.3-1|GENE_exon-XM_004485354.3-1|transcript|rna-XM_004485354.3|protein_coding|4/15|c.606+819T>C||||||,C|intron_variant|MODIFIER|exon-XM_004485355.3-1|GENE_exon-XM_004485355.3-1|transcript|rna-XM_004485355.3|protein_coding|4/15|c.606+819T>C||||||,C|intron_variant|MODIFIER|exon-XM_004485356.3-1|GENE_exon-XM_004485356.3-1|transcript|rna-XM_004485356.3|protein_coding|4/15|c.606+819T>C||||||,C|intron_variant|MODIFIER|exon-XM_012712897.2-1|GENE_exon-XM_012712897.2-1|transcript|rna-XM_012712897.2|protein_coding|4/13|c.606+819T>C||||||,C|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485354.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485355.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485356.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_012712897.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.371e+00;ClippingRankSum=0.00;DP=97;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.250;MQ=59.61;MQRankSum=-5.519e+00;QD=1.66;ReadPosRankSum=0.143;SOR=0.810;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",93300,".","A","G","0/0","0/1",65.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_004485354.3-1|GENE_exon-XM_004485354.3-1|transcript|rna-XM_004485354.3|protein_coding|4/15|c.606+827A>G||||||,G|intron_variant|MODIFIER|exon-XM_004485355.3-1|GENE_exon-XM_004485355.3-1|transcript|rna-XM_004485355.3|protein_coding|4/15|c.606+827A>G||||||,G|intron_variant|MODIFIER|exon-XM_004485356.3-1|GENE_exon-XM_004485356.3-1|transcript|rna-XM_004485356.3|protein_coding|4/15|c.606+827A>G||||||,G|intron_variant|MODIFIER|exon-XM_012712897.2-1|GENE_exon-XM_012712897.2-1|transcript|rna-XM_012712897.2|protein_coding|4/13|c.606+827A>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485354.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485355.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_004485356.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101490835|gene-LOC101490835|transcript|XM_012712897.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.764e+00;ClippingRankSum=0.00;DP=96;ExcessHet=3.0103;FS=3.739;MLEAC=1;MLEAF=0.250;MQ=59.60;MQRankSum=-5.964e+00;QD=1.14;ReadPosRankSum=0.091;SOR=1.274;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",116843,".","G","A","0/1","0/0",84.87,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_003474496.1-1|GENE_exon-XR_003474496.1-1|transcript|rna-XR_003474496.1|pseudogene||n.-4883C>T|||||4883|,A|intergenic_region|MODIFIER|exon-XR_003474496.1-1-exon-XM_004485358.3-1|GENE_exon-XR_003474496.1-1-GENE_exon-XM_004485358.3-1|intergenic_region|GENE_exon-XR_003474496.1-1-GENE_exon-XM_004485358.3-1|||n.116843G>A||||||;BaseQRankSum=3.59;ClippingRankSum=0.00;DP=29;ExcessHet=3.9794;FS=3.680;MLEAC=2;MLEAF=0.500;MQ=57.80;MQRankSum=-1.919e+00;QD=6.06;ReadPosRankSum=0.026;SOR=0.105;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",125491,".","T","C","0/1","0/0",37.37,"QD2;map","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101491788|gene-LOC101491788|transcript|XM_004485358.3|protein_coding||c.-4118T>C|||||1907|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485358.3-1|GENE_exon-XM_004485358.3-1|transcript|rna-XM_004485358.3|protein_coding||c.*2058A>G|||||1907|,C|intergenic_region|MODIFIER|exon-XR_003474496.1-1-exon-XM_004485358.3-1|GENE_exon-XR_003474496.1-1-GENE_exon-XM_004485358.3-1|intergenic_region|GENE_exon-XR_003474496.1-1-GENE_exon-XM_004485358.3-1|||n.125491T>C||||||;BaseQRankSum=-2.472e+00;ClippingRankSum=0.00;DP=64;ExcessHet=3.0103;FS=11.067;MLEAC=1;MLEAF=0.250;MQ=59.94;MQRankSum=0.783;QD=1.10;ReadPosRankSum=-2.460e+00;SOR=3.215;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",281106,".","C","T","0/0","0/1",556.87,"PASS","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004485385.3-1|GENE_exon-XM_004485385.3-1|transcript|rna-XM_004485385.3|protein_coding||c.-2236G>A|||||1771|,T|downstream_gene_variant|MODIFIER|LOC101499607|gene-LOC101499607|transcript|XM_004485385.3|protein_coding||c.*7821C>T|||||1771|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485385.3-1-exon-XM_004485386.3-1|GENE_exon-XM_004485385.3-1-GENE_exon-XM_004485386.3-1|intergenic_region|GENE_exon-XM_004485385.3-1-GENE_exon-XM_004485386.3-1|||n.281106C>T||||||;BaseQRankSum=0.458;ClippingRankSum=0.00;DP=194;ExcessHet=3.9794;FS=17.914;MLEAC=2;MLEAF=0.500;MQ=46.05;MQRankSum=-3.264e+00;QD=5.06;ReadPosRankSum=0.513;SOR=1.747;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",281389,".","C","A","1/1","0/1",647.19,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485385.3-1|GENE_exon-XM_004485385.3-1|transcript|rna-XM_004485385.3|protein_coding||c.-2519G>T|||||2054|,A|downstream_gene_variant|MODIFIER|LOC101499607|gene-LOC101499607|transcript|XM_004485385.3|protein_coding||c.*8104C>A|||||2054|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485385.3-1-exon-XM_004485386.3-1|GENE_exon-XM_004485385.3-1-GENE_exon-XM_004485386.3-1|intergenic_region|GENE_exon-XM_004485385.3-1-GENE_exon-XM_004485386.3-1|||n.281389C>A||||||;BaseQRankSum=0.728;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=5.464;MLEAC=3;MLEAF=0.750;MQ=22.31;MQRankSum=2.29;QD=32.36;ReadPosRankSum=-1.221e+00;SOR=3.500;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",365763,".","G","A","0/1","0/0",15.32,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|3_prime_UTR_variant|MODIFIER|exon-XM_012712806.2-1|GENE_exon-XM_012712806.2-1|transcript|rna-XM_012712806.2|protein_coding|2/2|c.*1368C>T|||||1623|,A|upstream_gene_variant|MODIFIER|exon-XM_004485406.3-1|GENE_exon-XM_004485406.3-1|transcript|rna-XM_004485406.3|protein_coding||c.-4393C>T|||||4227|,A|upstream_gene_variant|MODIFIER|LOC101505803|gene-LOC101505803|transcript|XM_004485407.3|protein_coding||c.-9975G>A|||||4531|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485407.3-1|GENE_exon-XM_004485407.3-1|transcript|rna-XM_004485407.3|protein_coding||c.-4905G>A|||||4531|,A|downstream_gene_variant|MODIFIER|LOC101505466|gene-LOC101505466|transcript|XM_004485406.3|protein_coding||c.*9303G>A|||||4227|WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC105851139|gene-LOC105851139|transcript|XM_012712806.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.81;ClippingRankSum=0.00;DP=202;ExcessHet=3.0103;FS=11.681;MLEAC=1;MLEAF=0.250;MQ=57.04;MQRankSum=0.423;QD=0.18;ReadPosRankSum=0.278;SOR=1.937;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",365786,".","C","A","0/1","0/0",66.87,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|3_prime_UTR_variant|MODIFIER|exon-XM_012712806.2-1|GENE_exon-XM_012712806.2-1|transcript|rna-XM_012712806.2|protein_coding|2/2|c.*1345G>T|||||1600|,A|upstream_gene_variant|MODIFIER|exon-XM_004485406.3-1|GENE_exon-XM_004485406.3-1|transcript|rna-XM_004485406.3|protein_coding||c.-4416G>T|||||4250|,A|upstream_gene_variant|MODIFIER|LOC101505803|gene-LOC101505803|transcript|XM_004485407.3|protein_coding||c.-9952C>A|||||4508|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485407.3-1|GENE_exon-XM_004485407.3-1|transcript|rna-XM_004485407.3|protein_coding||c.-4882C>A|||||4508|,A|downstream_gene_variant|MODIFIER|LOC101505466|gene-LOC101505466|transcript|XM_004485406.3|protein_coding||c.*9326C>A|||||4250|WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC105851139|gene-LOC105851139|transcript|XM_012712806.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=2.11;ClippingRankSum=0.00;DP=229;ExcessHet=3.9794;FS=15.837;MLEAC=2;MLEAF=0.500;MQ=57.55;MQRankSum=1.47;QD=0.72;ReadPosRankSum=-1.635e+00;SOR=1.833;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",365939,".","A","C","0/0","0/1",246.22,"PASS","AC=1;AF=0.250;AN=4;ANN=C|3_prime_UTR_variant|MODIFIER|exon-XM_012712806.2-1|GENE_exon-XM_012712806.2-1|transcript|rna-XM_012712806.2|protein_coding|2/2|c.*1192T>G|||||1447|,C|upstream_gene_variant|MODIFIER|exon-XM_004485406.3-1|GENE_exon-XM_004485406.3-1|transcript|rna-XM_004485406.3|protein_coding||c.-4569T>G|||||4403|,C|upstream_gene_variant|MODIFIER|LOC101505803|gene-LOC101505803|transcript|XM_004485407.3|protein_coding||c.-9799A>C|||||4355|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485407.3-1|GENE_exon-XM_004485407.3-1|transcript|rna-XM_004485407.3|protein_coding||c.-4729A>C|||||4355|,C|downstream_gene_variant|MODIFIER|LOC101505466|gene-LOC101505466|transcript|XM_004485406.3|protein_coding||c.*9479A>C|||||4403|WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC105851139|gene-LOC105851139|transcript|XM_012712806.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.574e+00;ClippingRankSum=0.00;DP=153;ExcessHet=3.0103;FS=51.277;MLEAC=1;MLEAF=0.250;MQ=53.11;MQRankSum=-6.224e+00;QD=4.17;ReadPosRankSum=-1.350e+00;SOR=5.993;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",623175,".","A","AATATAT,AATAT","1/1","1/2",2443.16,"mrd30","AC=3,1;AF=0.750,0.250;AN=4;ANN=AATATAT|upstream_gene_variant|MODIFIER|exon-XM_004485444.3-1|GENE_exon-XM_004485444.3-1|transcript|rna-XM_004485444.3|protein_coding||c.-4480_-4479insATATAT|||||3913|,AATAT|upstream_gene_variant|MODIFIER|exon-XM_004485444.3-1|GENE_exon-XM_004485444.3-1|transcript|rna-XM_004485444.3|protein_coding||c.-4480_-4479insATAT|||||3913|,AATATAT|upstream_gene_variant|MODIFIER|exon-XR_003471355.1-1|GENE_exon-XR_003471355.1-1|transcript|rna-XR_003471355.1|pseudogene||n.-2761_-2760insATATAT|||||2761|,AATAT|upstream_gene_variant|MODIFIER|exon-XR_003471355.1-1|GENE_exon-XR_003471355.1-1|transcript|rna-XR_003471355.1|pseudogene||n.-2761_-2760insATAT|||||2761|,AATATAT|upstream_gene_variant|MODIFIER|exon-XM_004485445.3-1|GENE_exon-XM_004485445.3-1|transcript|rna-XM_004485445.3|protein_coding||c.-671_-670insATATAT|||||570|,AATAT|upstream_gene_variant|MODIFIER|exon-XM_004485445.3-1|GENE_exon-XM_004485445.3-1|transcript|rna-XM_004485445.3|protein_coding||c.-671_-670insATAT|||||570|,AATATAT|upstream_gene_variant|MODIFIER|LOC101491272|gene-LOC101491272|transcript|XM_004485446.3|protein_coding||c.-4011_-4010insATATAT|||||2389|WARNING_TRANSCRIPT_NO_START_CODON,AATAT|upstream_gene_variant|MODIFIER|LOC101491272|gene-LOC101491272|transcript|XM_004485446.3|protein_coding||c.-4011_-4010insATAT|||||2389|WARNING_TRANSCRIPT_NO_START_CODON,AATATAT|upstream_gene_variant|MODIFIER|exon-XM_004485446.3-1|GENE_exon-XM_004485446.3-1|transcript|rna-XM_004485446.3|protein_coding||c.-2553_-2552insATATAT|||||2389|,AATAT|upstream_gene_variant|MODIFIER|exon-XM_004485446.3-1|GENE_exon-XM_004485446.3-1|transcript|rna-XM_004485446.3|protein_coding||c.-2553_-2552insATAT|||||2389|,AATATAT|upstream_gene_variant|MODIFIER|LOC101491593|gene-LOC101491593|transcript|XM_004485447.3|protein_coding||c.-7806_-7805insATATAT|||||4739|WARNING_TRANSCRIPT_NO_START_CODON,AATAT|upstream_gene_variant|MODIFIER|LOC101491593|gene-LOC101491593|transcript|XM_004485447.3|protein_coding||c.-7806_-7805insATAT|||||4739|WARNING_TRANSCRIPT_NO_START_CODON,AATATAT|downstream_gene_variant|MODIFIER|LOC101490633|gene-LOC101490633|transcript|XM_004485444.3|protein_coding||c.*9621_*9622insATATAT|||||3913|WARNING_TRANSCRIPT_NO_START_CODON,AATAT|downstream_gene_variant|MODIFIER|LOC101490633|gene-LOC101490633|transcript|XM_004485444.3|protein_coding||c.*9621_*9622insATAT|||||3913|WARNING_TRANSCRIPT_NO_START_CODON,AATATAT|downstream_gene_variant|MODIFIER|LOC113785200|gene-LOC113785200|transcript|XR_003471355.1|snoRNA||n.*2863_*2864insATATAT|||||2761|,AATAT|downstream_gene_variant|MODIFIER|LOC113785200|gene-LOC113785200|transcript|XR_003471355.1|snoRNA||n.*2863_*2864insATAT|||||2761|,AATATAT|downstream_gene_variant|MODIFIER|LOC101490959|gene-LOC101490959|transcript|XM_004485445.3|protein_coding||c.*1326_*1327insATATAT|||||570|WARNING_TRANSCRIPT_NO_START_CODON,AATAT|downstream_gene_variant|MODIFIER|LOC101490959|gene-LOC101490959|transcript|XM_004485445.3|protein_coding||c.*1326_*1327insATAT|||||570|WARNING_TRANSCRIPT_NO_START_CODON,AATATAT|downstream_gene_variant|MODIFIER|exon-XM_004485447.3-1|GENE_exon-XM_004485447.3-1|transcript|rna-XM_004485447.3|protein_coding||c.*5305_*5306insATATAT|||||4739|,AATAT|downstream_gene_variant|MODIFIER|exon-XM_004485447.3-1|GENE_exon-XM_004485447.3-1|transcript|rna-XM_004485447.3|protein_coding||c.*5305_*5306insATAT|||||4739|,AATATAT|intergenic_region|MODIFIER|exon-XM_004485445.3-1-exon-XM_004485446.3-1|GENE_exon-XM_004485445.3-1-GENE_exon-XM_004485446.3-1|intergenic_region|GENE_exon-XM_004485445.3-1-GENE_exon-XM_004485446.3-1|||n.623175_623176insATATAT||||||,AATAT|intergenic_region|MODIFIER|exon-XM_004485445.3-1-exon-XM_004485446.3-1|GENE_exon-XM_004485445.3-1-GENE_exon-XM_004485446.3-1|intergenic_region|GENE_exon-XM_004485445.3-1-GENE_exon-XM_004485446.3-1|||n.623175_623176insATAT||||||;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=3,1;MLEAF=0.750,0.250;MQ=41.93;QD=31.67;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",716217,".","T","TTAAATATGAACTTCATATTGCATCCTA","0/1","0/0",471.2,"mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=TTAAATATGAACTTCATATTGCATCCTA|upstream_gene_variant|MODIFIER|LOC101495905|gene-LOC101495905|transcript|XM_004485461.3|protein_coding||c.-7017_-7016insTAAATATGAACTTCATATTGCATCCTA|||||3362|WARNING_TRANSCRIPT_NO_START_CODON,TTAAATATGAACTTCATATTGCATCCTA|upstream_gene_variant|MODIFIER|exon-XM_004485461.3-1|GENE_exon-XM_004485461.3-1|transcript|rna-XM_004485461.3|protein_coding||c.-3460_-3459insTAAATATGAACTTCATATTGCATCCTA|||||3362|,TTAAATATGAACTTCATATTGCATCCTA|intron_variant|MODIFIER|exon-XM_004486183.3-1|GENE_exon-XM_004486183.3-1|transcript|rna-XM_004486183.3|protein_coding|22/26|c.5008+23_5008+24insTAAATATGAACTTCATATTGCATCCTA||||||,TTAAATATGAACTTCATATTGCATCCTA|intron_variant|MODIFIER|exon-XM_012713623.2-1|GENE_exon-XM_012713623.2-1|transcript|rna-XM_012713623.2|protein_coding|22/26|c.5002+23_5002+24insTAAATATGAACTTCATATTGCATCCTA||||||,TTAAATATGAACTTCATATTGCATCCTA|non_coding_transcript_variant|MODIFIER|LOC101501526|gene-LOC101501526|transcript|XM_004486183.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,TTAAATATGAACTTCATATTGCATCCTA|non_coding_transcript_variant|MODIFIER|LOC101501526|gene-LOC101501526|transcript|XM_012713623.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.465e+00;ClippingRankSum=0.00;DP=103;ExcessHet=3.9794;FS=5.441;MLEAC=2;MLEAF=0.500;MQ=52.66;MQRankSum=0.366;QD=27.97;ReadPosRankSum=-1.465e+00;SOR=2.225;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",716318,".","A","ATT","0/0","0/1",97.83,"QD2","AC=1;AF=0.250;AN=4;ANN=ATT|upstream_gene_variant|MODIFIER|LOC101495905|gene-LOC101495905|transcript|XM_004485461.3|protein_coding||c.-6916_-6915insTT|||||3261|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|exon-XM_004485461.3-1|GENE_exon-XM_004485461.3-1|transcript|rna-XM_004485461.3|protein_coding||c.-3359_-3358insTT|||||3261|,ATT|intron_variant|MODIFIER|exon-XM_004486183.3-1|GENE_exon-XM_004486183.3-1|transcript|rna-XM_004486183.3|protein_coding|22/26|c.5009-42_5009-41insTT||||||,ATT|intron_variant|MODIFIER|exon-XM_012713623.2-1|GENE_exon-XM_012713623.2-1|transcript|rna-XM_012713623.2|protein_coding|22/26|c.5003-42_5003-41insTT||||||,ATT|non_coding_transcript_variant|MODIFIER|LOC101501526|gene-LOC101501526|transcript|XM_004486183.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,ATT|non_coding_transcript_variant|MODIFIER|LOC101501526|gene-LOC101501526|transcript|XM_012713623.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.656e+00;ClippingRankSum=0.00;DP=102;ExcessHet=3.9794;FS=14.511;MLEAC=2;MLEAF=0.500;MQ=54.26;MQRankSum=-3.075e+00;QD=1.60;ReadPosRankSum=-4.132e+00;SOR=2.534;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",716319,".","G","GCATTCTA","0/0","0/1",91.83,"QD2","AC=1;AF=0.250;AN=4;ANN=GCATTCTA|upstream_gene_variant|MODIFIER|LOC101495905|gene-LOC101495905|transcript|XM_004485461.3|protein_coding||c.-6915_-6914insCATTCTA|||||3260|WARNING_TRANSCRIPT_NO_START_CODON,GCATTCTA|upstream_gene_variant|MODIFIER|exon-XM_004485461.3-1|GENE_exon-XM_004485461.3-1|transcript|rna-XM_004485461.3|protein_coding||c.-3358_-3357insCATTCTA|||||3260|,GCATTCTA|intron_variant|MODIFIER|exon-XM_004486183.3-1|GENE_exon-XM_004486183.3-1|transcript|rna-XM_004486183.3|protein_coding|22/26|c.5009-41_5009-40insCATTCTA||||||,GCATTCTA|intron_variant|MODIFIER|exon-XM_012713623.2-1|GENE_exon-XM_012713623.2-1|transcript|rna-XM_012713623.2|protein_coding|22/26|c.5003-41_5003-40insCATTCTA||||||,GCATTCTA|non_coding_transcript_variant|MODIFIER|LOC101501526|gene-LOC101501526|transcript|XM_004486183.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,GCATTCTA|non_coding_transcript_variant|MODIFIER|LOC101501526|gene-LOC101501526|transcript|XM_012713623.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-2.082e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.9794;FS=23.374;MLEAC=2;MLEAF=0.500;MQ=54.08;MQRankSum=-2.970e+00;QD=1.53;SOR=3.899;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",803123,".","AC","A","0/0","0/1",642.15,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101502165|gene-LOC101502165|transcript|XM_004486185.3|protein_coding||c.-7767delC|||||4776|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101502165|gene-LOC101502165|transcript|XM_027333595.1|protein_coding||c.-7772delC|||||4776|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004486185.3-1|GENE_exon-XM_004486185.3-1|transcript|rna-XM_004486185.3|protein_coding||c.*4976delG|||||4776|,A|downstream_gene_variant|MODIFIER|exon-XM_027333595.1-1|GENE_exon-XM_027333595.1-1|transcript|rna-XM_027333595.1|protein_coding||c.*4976delG|||||4776|,A|intergenic_region|MODIFIER|exon-XM_012712632.2-1-exon-XM_004486185.3-1|GENE_exon-XM_012712632.2-1-GENE_exon-XM_004486185.3-1|intergenic_region|GENE_exon-XM_012712632.2-1-GENE_exon-XM_004486185.3-1|||n.803124delC||||||;BaseQRankSum=0.937;ClippingRankSum=0.00;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.31;MQRankSum=-1.477e+00;QD=3.00;ReadPosRankSum=1.40;SOR=0.667;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",803489,".","G","A","0/0","0/1",26.2,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101502165|gene-LOC101502165|transcript|XM_004486185.3|protein_coding||c.-7402G>A|||||4411|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101502165|gene-LOC101502165|transcript|XM_027333595.1|protein_coding||c.-7407G>A|||||4411|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004486185.3-1|GENE_exon-XM_004486185.3-1|transcript|rna-XM_004486185.3|protein_coding||c.*4611C>T|||||4411|,A|downstream_gene_variant|MODIFIER|exon-XM_027333595.1-1|GENE_exon-XM_027333595.1-1|transcript|rna-XM_027333595.1|protein_coding||c.*4611C>T|||||4411|,A|intergenic_region|MODIFIER|exon-XM_012712632.2-1-exon-XM_004486185.3-1|GENE_exon-XM_012712632.2-1-GENE_exon-XM_004486185.3-1|intergenic_region|GENE_exon-XM_012712632.2-1-GENE_exon-XM_004486185.3-1|||n.803489G>A||||||;BaseQRankSum=3.33;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=14.591;MLEAC=1;MLEAF=0.250;MQ=68.88;MQRankSum=-6.063e+00;QD=0.55;ReadPosRankSum=1.92;SOR=2.899;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",833962,".","A","AATATATATATATATATATATATAT","0/0","1/1",141.85,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=AATATATATATATATATATATATAT|upstream_gene_variant|MODIFIER|exon-XM_004485474.3-1|GENE_exon-XM_004485474.3-1|transcript|rna-XM_004485474.3|protein_coding||c.-1258_-1257insATATATATATATATATATATATAT|||||1120|,AATATATATATATATATATATATAT|upstream_gene_variant|MODIFIER|LOC101500563|gene-LOC101500563|transcript|XM_004485475.3|protein_coding||c.-5277_-5276insATATATATATATATATATATATAT|||||1764|WARNING_TRANSCRIPT_NO_START_CODON,AATATATATATATATATATATATAT|downstream_gene_variant|MODIFIER|LOC101500249|gene-LOC101500249|transcript|XM_004485474.3|protein_coding||c.*2137_*2138insATATATATATATATATATATATAT|||||1120|WARNING_TRANSCRIPT_NO_START_CODON,AATATATATATATATATATATATAT|downstream_gene_variant|MODIFIER|exon-XM_004485475.3-1|GENE_exon-XM_004485475.3-1|transcript|rna-XM_004485475.3|protein_coding||c.*1951_*1952insATATATATATATATATATATATAT|||||1764|,AATATATATATATATATATATATAT|intergenic_region|MODIFIER|exon-XM_004485474.3-1-exon-XM_004485475.3-1|GENE_exon-XM_004485474.3-1-GENE_exon-XM_004485475.3-1|intergenic_region|GENE_exon-XM_004485474.3-1-GENE_exon-XM_004485475.3-1|||n.833962_833963insATATATATATATATATATATATAT||||||;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=59.50;QD=30.31;SOR=1.179;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1209242,".","T","TA","0/0","0/1",150.15,"PASS","AC=1;AF=0.250;AN=4;ANN=TA|upstream_gene_variant|MODIFIER|exon-XM_012712672.2-1|GENE_exon-XM_012712672.2-1|transcript|rna-XM_012712672.2|protein_coding||c.-1725_-1724insT|||||1718|,TA|upstream_gene_variant|MODIFIER|LOC101493345|gene-LOC101493345|transcript|XM_004485546.3|protein_coding||c.-7451_-7450insA|||||4232|WARNING_TRANSCRIPT_NO_START_CODON,TA|upstream_gene_variant|MODIFIER|exon-XM_004485546.3-1|GENE_exon-XM_004485546.3-1|transcript|rna-XM_004485546.3|protein_coding||c.-4477_-4476insA|||||4232|,TA|downstream_gene_variant|MODIFIER|LOC101505365|gene-LOC101505365|transcript|XM_012712672.2|protein_coding||c.*4710_*4711insA|||||1718|WARNING_TRANSCRIPT_NO_START_CODON,TA|intergenic_region|MODIFIER|exon-XM_012712672.2-1-exon-XM_004485546.3-1|GENE_exon-XM_012712672.2-1-GENE_exon-XM_004485546.3-1|intergenic_region|GENE_exon-XM_012712672.2-1-GENE_exon-XM_004485546.3-1|||n.1209242_1209243insA||||||;BaseQRankSum=-1.370e+00;ClippingRankSum=0.00;DP=83;ExcessHet=3.0103;FS=6.447;MLEAC=1;MLEAF=0.250;MQ=58.89;MQRankSum=1.02;QD=4.29;ReadPosRankSum=-7.830e-01;SOR=0.116;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1247738,".","T","TTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA","1/1","0/0",105.49,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=TTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA|upstream_gene_variant|MODIFIER|exon-XM_004485551.3-1|GENE_exon-XM_004485551.3-1|transcript|rna-XM_004485551.3|protein_coding||c.-4154_-4153insTTAATTATTATTATAGTTATTATTAATCTTATTATTATTAAAAACTGTTATAATTAAAAATTATTAAAATTA|||||4091|,TTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA|upstream_gene_variant|MODIFIER|LOC101495259|gene-LOC101495259|transcript|XM_004485552.3|protein_coding||c.-6836_-6835insTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA|||||3414|WARNING_TRANSCRIPT_NO_START_CODON,TTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA|downstream_gene_variant|MODIFIER|LOC101494925|gene-LOC101494925|transcript|XM_004485551.3|protein_coding||c.*4714_*4715insTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA|||||4091|WARNING_TRANSCRIPT_NO_START_CODON,TTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA|downstream_gene_variant|MODIFIER|exon-XM_004485552.3-1|GENE_exon-XM_004485552.3-1|transcript|rna-XM_004485552.3|protein_coding||c.*3649_*3650insTTAATTATTATTATAGTTATTATTAATCTTATTATTATTAAAAACTGTTATAATTAAAAATTATTAAAATTA|||||3414|,TTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA|intergenic_region|MODIFIER|exon-XM_004485551.3-1-exon-XM_004485552.3-1|GENE_exon-XM_004485551.3-1-GENE_exon-XM_004485552.3-1|intergenic_region|GENE_exon-XM_004485551.3-1-GENE_exon-XM_004485552.3-1|||n.1247738_1247739insTAATTTTAATAATTTTTAATTATAACAGTTTTTAATAATAATAAGATTAATAATAACTATAATAATAATTAA||||||;DP=27;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.20;QD=11.72;SOR=3.056;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1309753,".","C","T","0/1","0/0",159.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC113785218|gene-LOC113785218|transcript|XR_003471372.1|snoRNA||n.-3633C>T|||||3552|,T|upstream_gene_variant|MODIFIER|LOC113785211|gene-LOC113785211|transcript|XR_003471365.1|snoRNA||n.-3941C>T|||||3859|,T|upstream_gene_variant|MODIFIER|LOC113785219|gene-LOC113785219|transcript|XR_003471373.1|snoRNA||n.-4149C>T|||||4067|,T|upstream_gene_variant|MODIFIER|LOC113785213|gene-LOC113785213|transcript|XR_003471367.1|snoRNA||n.-4495C>T|||||4414|,T|upstream_gene_variant|MODIFIER|LOC113785208|gene-LOC113785208|transcript|XR_003471363.1|snoRNA||n.-4821C>T|||||4740|,T|upstream_gene_variant|MODIFIER|LOC101497545|gene-LOC101497545|transcript|XM_004485558.3|protein_coding||c.-5820C>T|||||4742|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101497217|gene-LOC101497217|transcript|XM_004485557.3|protein_coding||c.*11478C>T|||||2002|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485557.3-1|GENE_exon-XM_004485557.3-1|transcript|rna-XM_004485557.3|protein_coding||c.*2519C>T|||||2002|,T|downstream_gene_variant|MODIFIER|exon-XR_003471372.1-1|GENE_exon-XR_003471372.1-1|transcript|rna-XR_003471372.1|pseudogene||n.*3552G>A|||||3552|,T|downstream_gene_variant|MODIFIER|exon-XR_003471365.1-1|GENE_exon-XR_003471365.1-1|transcript|rna-XR_003471365.1|pseudogene||n.*3859G>A|||||3859|,T|downstream_gene_variant|MODIFIER|exon-XR_003471373.1-1|GENE_exon-XR_003471373.1-1|transcript|rna-XR_003471373.1|pseudogene||n.*4067G>A|||||4067|,T|downstream_gene_variant|MODIFIER|exon-XR_003471367.1-1|GENE_exon-XR_003471367.1-1|transcript|rna-XR_003471367.1|pseudogene||n.*4414G>A|||||4414|,T|downstream_gene_variant|MODIFIER|exon-XR_003471363.1-1|GENE_exon-XR_003471363.1-1|transcript|rna-XR_003471363.1|pseudogene||n.*4740G>A|||||4740|,T|downstream_gene_variant|MODIFIER|exon-XM_004485558.3-1|GENE_exon-XM_004485558.3-1|transcript|rna-XM_004485558.3|protein_coding||c.*4852G>A|||||4742|,T|intergenic_region|MODIFIER|exon-XM_004485557.3-1-exon-XR_003471372.1-1|GENE_exon-XM_004485557.3-1-GENE_exon-XR_003471372.1-1|intergenic_region|GENE_exon-XM_004485557.3-1-GENE_exon-XR_003471372.1-1|||n.1309753C>T||||||;BaseQRankSum=3.17;ClippingRankSum=0.00;DP=60;ExcessHet=3.0103;FS=7.402;MLEAC=1;MLEAF=0.250;MQ=45.00;MQRankSum=-2.510e+00;QD=5.90;ReadPosRankSum=1.60;SOR=2.286;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1540564,".","T","C","1/1","0/1",899.32,"map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|TRNAV-AAC|gene-TRNAV-AAC-3|transcript|rna-TRNAV-AAC-3|protein_coding||c.-4361T>C|||||4361|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|LOC101507431|gene-LOC101507431|transcript|XM_004485590.3|protein_coding||c.-7083T>C|||||4681|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485590.3-1|GENE_exon-XM_004485590.3-1|transcript|rna-XM_004485590.3|protein_coding||c.-4775T>C|||||4681|,C|downstream_gene_variant|MODIFIER|TRNAV-AAC|gene-TRNAV-AAC|transcript|rna-TRNAV-AAC|protein_coding||c.*2180T>C|||||2180|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|TRNAV-AAC|gene-TRNAV-AAC-2|transcript|rna-TRNAV-AAC-2|protein_coding||c.*2020T>C|||||2020|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intergenic_region|MODIFIER|TRNAV-AAC-TRNAV-AAC|gene-TRNAV-AAC-2-gene-TRNAV-AAC-3|intergenic_region|gene-TRNAV-AAC-2-gene-TRNAV-AAC-3|||n.1540564T>C||||||;BaseQRankSum=-1.044e+00;ClippingRankSum=0.00;DP=55;ExcessHet=3.0103;FS=6.595;MLEAC=3;MLEAF=0.750;MQ=51.04;MQRankSum=-2.040e-01;QD=16.97;ReadPosRankSum=-4.660e-01;SOR=1.048;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1542754,".","T","C","1/1","0/1",627.62,"mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|TRNAV-AAC|gene-TRNAV-AAC-3|transcript|rna-TRNAV-AAC-3|protein_coding||c.-2171T>C|||||2171|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|upstream_gene_variant|MODIFIER|LOC101507431|gene-LOC101507431|transcript|XM_004485590.3|protein_coding||c.-4893T>C|||||2491|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485590.3-1|GENE_exon-XM_004485590.3-1|transcript|rna-XM_004485590.3|protein_coding||c.-2585T>C|||||2491|,C|downstream_gene_variant|MODIFIER|TRNAV-AAC|gene-TRNAV-AAC|transcript|rna-TRNAV-AAC|protein_coding||c.*4370T>C|||||4370|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|downstream_gene_variant|MODIFIER|TRNAV-AAC|gene-TRNAV-AAC-2|transcript|rna-TRNAV-AAC-2|protein_coding||c.*4210T>C|||||4210|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,C|intergenic_region|MODIFIER|TRNAV-AAC-TRNAV-AAC|gene-TRNAV-AAC-2-gene-TRNAV-AAC-3|intergenic_region|gene-TRNAV-AAC-2-gene-TRNAV-AAC-3|||n.1542754T>C||||||;BaseQRankSum=-2.172e+00;ClippingRankSum=0.00;DP=46;ExcessHet=3.0103;FS=37.356;MLEAC=3;MLEAF=0.750;MQ=43.56;MQRankSum=0.00;QD=13.64;ReadPosRankSum=-3.210e-01;SOR=7.223;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1725549,".","CA","C","1/1","0/0",547.38,"map;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485621.3-1|GENE_exon-XM_004485621.3-1|transcript|rna-XM_004485621.3|protein_coding||c.-3159delT|||||2939|,C|upstream_gene_variant|MODIFIER|exon-XR_003470004.1-1|GENE_exon-XR_003470004.1-1|transcript|rna-XR_003470004.1|pseudogene||n.-505delA|||||505|,C|downstream_gene_variant|MODIFIER|LOC101489655|gene-LOC101489655|transcript|XM_004485621.3|protein_coding||c.*4194delA|||||2939|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|exon-XM_004485622.2-1|GENE_exon-XM_004485622.2-1|transcript|rna-XM_004485622.2|protein_coding|2/3|c.118-576delT||||||,C|non_coding_transcript_variant|MODIFIER|LOC101489981|gene-LOC101489981|transcript|XM_004485622.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=49;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.80;SOR=2.400;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1726922,".","T","G","1/1","0/0",1262.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485621.3-1|GENE_exon-XM_004485621.3-1|transcript|rna-XM_004485621.3|protein_coding||c.-4531A>C|||||4311|,G|upstream_gene_variant|MODIFIER|LOC101507627|gene-LOC101507627|transcript|XM_012713227.2|protein_coding||c.-7783T>G|||||4078|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101507627|gene-LOC101507627|transcript|XM_027330127.1|protein_coding||c.-7784T>G|||||4078|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101489655|gene-LOC101489655|transcript|XM_004485621.3|protein_coding||c.*5566T>G|||||4311|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012713227.2-1|GENE_exon-XM_012713227.2-1|transcript|rna-XM_012713227.2|protein_coding||c.*4326A>C|||||4078|,G|downstream_gene_variant|MODIFIER|exon-XM_027330127.1-1|GENE_exon-XM_027330127.1-1|transcript|rna-XM_027330127.1|protein_coding||c.*4326A>C|||||4078|,G|intron_variant|MODIFIER|exon-XM_004485622.2-1|GENE_exon-XM_004485622.2-1|transcript|rna-XM_004485622.2|protein_coding|2/3|c.117+105A>C||||||,G|intron_variant|MODIFIER|exon-XR_003470004.1-1|GENE_exon-XR_003470004.1-1|transcript|rna-XR_003470004.1|pseudogene|1/1|n.715+153T>G||||||,G|intragenic_variant|MODIFIER|LOC113783949|gene-LOC113783949|gene_variant|gene-LOC113783949|||n.1726922T>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101489981|gene-LOC101489981|transcript|XM_004485622.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.68;QD=22.15;SOR=1.569;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1729960,".","AAATAATAAT","AAATAATAATAATAATAATAATAAT,A","2/2","1/1",3037.16,"PASS","AC=2,2;AF=0.500,0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485622.2-1|GENE_exon-XM_004485622.2-1|transcript|rna-XM_004485622.2|protein_coding||c.-2671_-2663delATTATTATT|||||2424|,AAATAATAATAATAATAATAATAAT|upstream_gene_variant|MODIFIER|exon-XM_004485622.2-1|GENE_exon-XM_004485622.2-1|transcript|rna-XM_004485622.2|protein_coding||c.-2672_-2671insATTATTATTATTATT|||||2433|,A|upstream_gene_variant|MODIFIER|LOC101507627|gene-LOC101507627|transcript|XM_012713227.2|protein_coding||c.-4744_-4736delAATAATAAT|||||1039|WARNING_TRANSCRIPT_NO_START_CODON,AAATAATAATAATAATAATAATAAT|upstream_gene_variant|MODIFIER|LOC101507627|gene-LOC101507627|transcript|XM_012713227.2|protein_coding||c.-4736_-4735insAATAATAATAATAAT|||||1030|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101507627|gene-LOC101507627|transcript|XM_027330127.1|protein_coding||c.-4745_-4737delAATAATAAT|||||1039|WARNING_TRANSCRIPT_NO_START_CODON,AAATAATAATAATAATAATAATAAT|upstream_gene_variant|MODIFIER|LOC101507627|gene-LOC101507627|transcript|XM_027330127.1|protein_coding||c.-4737_-4736insAATAATAATAATAAT|||||1030|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101489981|gene-LOC101489981|transcript|XM_004485622.2|protein_coding||c.*5752_*5760delAATAATAAT|||||2424|WARNING_TRANSCRIPT_NO_START_CODON,AAATAATAATAATAATAATAATAAT|downstream_gene_variant|MODIFIER|LOC101489981|gene-LOC101489981|transcript|XM_004485622.2|protein_coding||c.*5760_*5761insAATAATAATAATAAT|||||2433|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012713227.2-1|GENE_exon-XM_012713227.2-1|transcript|rna-XM_012713227.2|protein_coding||c.*1279_*1287delATTATTATT|||||1039|,AAATAATAATAATAATAATAATAAT|downstream_gene_variant|MODIFIER|exon-XM_012713227.2-1|GENE_exon-XM_012713227.2-1|transcript|rna-XM_012713227.2|protein_coding||c.*1278_*1279insATTATTATTATTATT|||||1030|,A|downstream_gene_variant|MODIFIER|exon-XM_027330127.1-1|GENE_exon-XM_027330127.1-1|transcript|rna-XM_027330127.1|protein_coding||c.*1279_*1287delATTATTATT|||||1039|,AAATAATAATAATAATAATAATAAT|downstream_gene_variant|MODIFIER|exon-XM_027330127.1-1|GENE_exon-XM_027330127.1-1|transcript|rna-XM_027330127.1|protein_coding||c.*1278_*1279insATTATTATTATTATT|||||1030|,A|intron_variant|MODIFIER|exon-XR_003470004.1-1|GENE_exon-XR_003470004.1-1|transcript|rna-XR_003470004.1|pseudogene|1/1|n.716-2542_716-2534delAATAATAAT||||||,AAATAATAATAATAATAATAATAAT|intron_variant|MODIFIER|exon-XR_003470004.1-1|GENE_exon-XR_003470004.1-1|transcript|rna-XR_003470004.1|pseudogene|1/1|n.716-2534_716-2533insAATAATAATAATAAT||||||,A|intragenic_variant|MODIFIER|LOC113783949|gene-LOC113783949|gene_variant|gene-LOC113783949|||n.1729961_1729969delAATAATAAT||||||,AAATAATAATAATAATAATAATAAT|intragenic_variant|MODIFIER|LOC113783949|gene-LOC113783949|gene_variant|gene-LOC113783949|||n.1729969_1729970insAATAATAATAATAAT||||||;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2,2;MLEAF=0.500,0.500;MQ=43.09;QD=29.99;SOR=1.033;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1740310,".","CTTTT","C,CT","1/1","2/2",3857.16,"PASS","AC=2,2;AF=0.500,0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101490514|gene-LOC101490514|transcript|XM_004485624.3|protein_coding||c.-8929_-8926delTTTT|||||2426|WARNING_TRANSCRIPT_NO_START_CODON,CT|upstream_gene_variant|MODIFIER|LOC101490514|gene-LOC101490514|transcript|XM_004485624.3|protein_coding||c.-8928_-8926delTTT|||||2425|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485624.3-1|GENE_exon-XM_004485624.3-1|transcript|rna-XM_004485624.3|protein_coding||c.*2661_*2664delAAAA|||||2426|,CT|downstream_gene_variant|MODIFIER|exon-XM_004485624.3-1|GENE_exon-XM_004485624.3-1|transcript|rna-XM_004485624.3|protein_coding||c.*2661_*2663delAAA|||||2425|,C|intron_variant|MODIFIER|exon-XM_004485625.3-1|GENE_exon-XM_004485625.3-1|transcript|rna-XM_004485625.3|protein_coding|1/6|c.1267+273_1267+276delTTTT||||||,CT|intron_variant|MODIFIER|exon-XM_004485625.3-1|GENE_exon-XM_004485625.3-1|transcript|rna-XM_004485625.3|protein_coding|1/6|c.1267+274_1267+276delTTT||||||,C|intron_variant|MODIFIER|exon-XM_027330142.1-1|GENE_exon-XM_027330142.1-1|transcript|rna-XM_027330142.1|protein_coding|1/6|c.-186+47_-186+50delTTTT||||||,CT|intron_variant|MODIFIER|exon-XM_027330142.1-1|GENE_exon-XM_027330142.1-1|transcript|rna-XM_027330142.1|protein_coding|1/6|c.-186+48_-186+50delTTT||||||,C|non_coding_transcript_variant|MODIFIER|LOC101490837|gene-LOC101490837|transcript|XM_004485625.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CT|non_coding_transcript_variant|MODIFIER|LOC101490837|gene-LOC101490837|transcript|XM_004485625.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101490837|gene-LOC101490837|transcript|XM_027330142.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CT|non_coding_transcript_variant|MODIFIER|LOC101490837|gene-LOC101490837|transcript|XM_027330142.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2,2;MLEAF=0.500,0.500;MQ=43.23;QD=30.24;SOR=0.738;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1748010,".","C","G","0/0","1/1",1098.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004485624.3-1|GENE_exon-XM_004485624.3-1|transcript|rna-XM_004485624.3|protein_coding|1/7|c.1142G>C|p.Arg381Thr|1231/2883|1142/2556|381/851||,G|upstream_gene_variant|MODIFIER|LOC101491159|gene-LOC101491159|transcript|XM_004485626.3|protein_coding||c.-7190C>G|||||3142|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485626.3-1|GENE_exon-XM_004485626.3-1|transcript|rna-XM_004485626.3|protein_coding||c.*3376G>C|||||3142|,G|non_coding_transcript_variant|MODIFIER|LOC101490514|gene-LOC101490514|transcript|XM_004485624.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.111e+00;ClippingRankSum=0.00;DP=96;ExcessHet=0.7918;FS=3.485;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=18.94;ReadPosRankSum=-5.170e-01;SOR=0.621;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1756525,".","A","G","1/1","0/0",1673.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485626.3-1|GENE_exon-XM_004485626.3-1|transcript|rna-XM_004485626.3|protein_coding||c.-1481T>C|||||1325|,G|upstream_gene_variant|MODIFIER|LOC101491474|gene-LOC101491474|transcript|XM_004485627.3|protein_coding||c.-3716A>G|||||2755|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101491159|gene-LOC101491159|transcript|XM_004485626.3|protein_coding||c.*5373A>G|||||1325|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485627.3-1|GENE_exon-XM_004485627.3-1|transcript|rna-XM_004485627.3|protein_coding||c.*3040T>C|||||2755|,G|intergenic_region|MODIFIER|exon-XM_004485626.3-1-exon-XM_004485627.3-1|GENE_exon-XM_004485626.3-1-GENE_exon-XM_004485627.3-1|intergenic_region|GENE_exon-XM_004485626.3-1-GENE_exon-XM_004485627.3-1|||n.1756525A>G||||||;DP=109;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.57;SOR=0.840;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1757035,".","G","A","1/1","0/0",1245.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485626.3-1|GENE_exon-XM_004485626.3-1|transcript|rna-XM_004485626.3|protein_coding||c.-1991C>T|||||1835|,A|upstream_gene_variant|MODIFIER|LOC101491474|gene-LOC101491474|transcript|XM_004485627.3|protein_coding||c.-3206G>A|||||2245|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101491159|gene-LOC101491159|transcript|XM_004485626.3|protein_coding||c.*5883G>A|||||1835|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485627.3-1|GENE_exon-XM_004485627.3-1|transcript|rna-XM_004485627.3|protein_coding||c.*2530C>T|||||2245|,A|intergenic_region|MODIFIER|exon-XM_004485626.3-1-exon-XM_004485627.3-1|GENE_exon-XM_004485626.3-1-GENE_exon-XM_004485627.3-1|intergenic_region|GENE_exon-XM_004485626.3-1-GENE_exon-XM_004485627.3-1|||n.1757035G>A||||||;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.98;QD=24.91;SOR=0.952;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1763726,".","G","A","1/1","0/0",1665.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485627.3-1|GENE_exon-XM_004485627.3-1|transcript|rna-XM_004485627.3|protein_coding||c.-3553C>T|||||3485|,A|upstream_gene_variant|MODIFIER|LOC101492453|gene-LOC101492453|transcript|XM_004485630.3|protein_coding||c.-5047G>A|||||4266|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485630.3-1|GENE_exon-XM_004485630.3-1|transcript|rna-XM_004485630.3|protein_coding||c.-4419G>A|||||4266|,A|downstream_gene_variant|MODIFIER|LOC101491474|gene-LOC101491474|transcript|XM_004485627.3|protein_coding||c.*4446G>A|||||3485|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|exon-XM_004485628.3-1|GENE_exon-XM_004485628.3-1|transcript|rna-XM_004485628.3|protein_coding|1/2|c.633+454C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101491789|gene-LOC101491789|transcript|XM_004485628.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=106;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.86;SOR=0.917;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1780743,".","GA","G","1/1","0/0",1231.38,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.-3815delA|||||149|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.-282delA|||||149|,G|downstream_gene_variant|MODIFIER|LOC101492786|gene-LOC101492786|transcript|XM_004485631.3|protein_coding||c.*3566delA|||||2944|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485631.3-1|GENE_exon-XM_004485631.3-1|transcript|rna-XM_004485631.3|protein_coding||c.*3056delA|||||2944|,G|intergenic_region|MODIFIER|exon-XM_004485631.3-1-exon-XM_004485632.3-1|GENE_exon-XM_004485631.3-1-GENE_exon-XM_004485632.3-1|intergenic_region|GENE_exon-XM_004485631.3-1-GENE_exon-XM_004485632.3-1|||n.1780744delA||||||;DP=76;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=41.03;QD=28.10;SOR=1.214;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1780788,".","T","TTTAAAAAAAAAGATA","1/1","0/0",1275.38,"MQ40","AC=2;AF=0.500;AN=4;ANN=TTTAAAAAAAAAGATA|upstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.-3771_-3770insTTAAAAAAAAAGATA|||||104|WARNING_TRANSCRIPT_NO_START_CODON,TTTAAAAAAAAAGATA|upstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.-238_-237insTTAAAAAAAAAGATA|||||104|,TTTAAAAAAAAAGATA|downstream_gene_variant|MODIFIER|LOC101492786|gene-LOC101492786|transcript|XM_004485631.3|protein_coding||c.*3610_*3611insTTAAAAAAAAAGATA|||||2989|WARNING_TRANSCRIPT_NO_START_CODON,TTTAAAAAAAAAGATA|downstream_gene_variant|MODIFIER|exon-XM_004485631.3-1|GENE_exon-XM_004485631.3-1|transcript|rna-XM_004485631.3|protein_coding||c.*3100_*3101insTTAAAAAAAAAGATA|||||2989|,TTTAAAAAAAAAGATA|intergenic_region|MODIFIER|exon-XM_004485631.3-1-exon-XM_004485632.3-1|GENE_exon-XM_004485631.3-1-GENE_exon-XM_004485632.3-1|intergenic_region|GENE_exon-XM_004485631.3-1-GENE_exon-XM_004485632.3-1|||n.1780788_1780789insTTAAAAAAAAAGATA||||||;DP=76;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=37.10;QD=27.85;SOR=1.536;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1780827,".","G","C","1/1","0/0",576.42,"mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.-3732G>C|||||66|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.-199G>C|||||66|,C|downstream_gene_variant|MODIFIER|LOC101492786|gene-LOC101492786|transcript|XM_004485631.3|protein_coding||c.*3649G>C|||||3027|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485631.3-1|GENE_exon-XM_004485631.3-1|transcript|rna-XM_004485631.3|protein_coding||c.*3139G>C|||||3027|,C|intergenic_region|MODIFIER|exon-XM_004485631.3-1-exon-XM_004485632.3-1|GENE_exon-XM_004485631.3-1-GENE_exon-XM_004485632.3-1|intergenic_region|GENE_exon-XM_004485631.3-1-GENE_exon-XM_004485632.3-1|||n.1780827G>C||||||;DP=73;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=42.88;QD=20.59;SOR=1.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1781004,".","AT","A","1/1","0/0",2699.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|5_prime_UTR_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding|1/2|c.-19delT|||||19|INFO_REALIGN_3_PRIME,A|downstream_gene_variant|MODIFIER|LOC101492786|gene-LOC101492786|transcript|XM_004485631.3|protein_coding||c.*3827delT|||||3205|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485631.3-1|GENE_exon-XM_004485631.3-1|transcript|rna-XM_004485631.3|protein_coding||c.*3317delT|||||3205|,A|non_coding_transcript_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME;DP=107;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.80;QD=32.63;SOR=0.976;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1784871,".","G","A","1/1","0/0",1304.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-5375G>A|||||2287|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-2454G>A|||||2287|,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*3978G>A|||||312|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*568G>A|||||312|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1784871G>A||||||;DP=100;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.18;QD=24.16;SOR=0.931;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1784921,".","A","AGGT","1/1","0/0",2512.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AGGT|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-5325_-5324insGGT|||||2236|WARNING_TRANSCRIPT_NO_START_CODON,AGGT|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-2404_-2403insGGT|||||2236|,AGGT|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4028_*4029insGGT|||||363|WARNING_TRANSCRIPT_NO_START_CODON,AGGT|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*618_*619insGGT|||||363|,AGGT|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1784921_1784922insGGT||||||;DP=103;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.61;QD=33.74;SOR=0.765;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1785017,".","C","T","1/1","0/0",1364.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-5229C>T|||||2141|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-2308C>T|||||2141|,T|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4124C>T|||||458|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*714C>T|||||458|,T|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785017C>T||||||;DP=102;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.94;SOR=0.728;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1785122,".","T","C","1/1","0/0",1323.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-5124T>C|||||2036|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-2203T>C|||||2036|,C|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4229T>C|||||563|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*819T>C|||||563|,C|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785122T>C||||||;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.61;QD=22.82;SOR=1.179;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1785166,".","AG","A","1/1","0/0",2408.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-5079delG|||||1991|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-2158delG|||||1991|,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4274delG|||||608|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*864delG|||||608|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785167delG||||||;DP=108;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.67;QD=34.02;SOR=1.033;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1785215,".","A","AAATG","1/1","0/0",2772.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AAATG|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-5031_-5030insAATG|||||1942|WARNING_TRANSCRIPT_NO_START_CODON,AAATG|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-2110_-2109insAATG|||||1942|,AAATG|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4322_*4323insAATG|||||657|WARNING_TRANSCRIPT_NO_START_CODON,AAATG|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*912_*913insAATG|||||657|,AAATG|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785215_1785216insAATG||||||;DP=104;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.65;QD=29.52;SOR=0.790;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1785259,".","ATC","A","1/1","0/0",1904.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4986_-4985delTC|||||1898|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-2065_-2064delTC|||||1898|,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4367_*4368delTC|||||701|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*957_*958delTC|||||701|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785260_1785261delTC||||||;DP=101;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=26.31;SOR=1.118;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1785600,".","A","AAC","1/1","0/0",1731.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AAC|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4646_-4645insAC|||||1557|WARNING_TRANSCRIPT_NO_START_CODON,AAC|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1725_-1724insAC|||||1557|,AAC|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4707_*4708insAC|||||1042|WARNING_TRANSCRIPT_NO_START_CODON,AAC|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1297_*1298insAC|||||1042|,AAC|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785600_1785601insAC||||||;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.98;QD=28.81;SOR=0.954;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1785875,".","C","T","1/1","0/0",2610.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4371C>T|||||1283|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1450C>T|||||1283|,T|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4982C>T|||||1316|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1572C>T|||||1316|,T|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785875C>T||||||;DP=103;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.29;QD=31.30;SOR=0.826;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785888,".","T","TG","1/1","0/0",2455.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TG|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4358_-4357insG|||||1269|WARNING_TRANSCRIPT_NO_START_CODON,TG|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1437_-1436insG|||||1269|,TG|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4995_*4996insG|||||1330|WARNING_TRANSCRIPT_NO_START_CODON,TG|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1585_*1586insG|||||1330|,TG|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785888_1785889insG||||||;DP=96;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.11;QD=32.07;SOR=0.804;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785889,".","T","A","1/1","0/0",2488.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4357T>A|||||1269|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1436T>A|||||1269|,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4996T>A|||||1330|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1586T>A|||||1330|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785889T>A||||||;DP=96;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.11;QD=27.15;SOR=0.804;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785891,".","T","A","1/1","0/0",2465.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4355T>A|||||1267|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1434T>A|||||1267|,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*4998T>A|||||1332|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1588T>A|||||1332|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785891T>A||||||;DP=95;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.06;QD=33.92;SOR=0.846;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785940,".","C","G","1/1","0/0",2338.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4306C>G|||||1218|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1385C>G|||||1218|,G|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5047C>G|||||1381|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1637C>G|||||1381|,G|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785940C>G||||||;DP=95;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.85;QD=25.56;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785946,".","TAATAGTAGTTG","T","1/1","0/0",2319.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4299_-4289delAATAGTAGTTG|||||1211|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1378_-1368delAATAGTAGTTG|||||1211|,T|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5054_*5064delAATAGTAGTTG|||||1388|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1644_*1654delAATAGTAGTTG|||||1388|,T|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785947_1785957delAATAGTAGTTG||||||;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.79;QD=29.57;SOR=0.981;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785967,".","T","A","1/1","0/0",2350.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4279T>A|||||1191|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1358T>A|||||1191|,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5074T>A|||||1408|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1664T>A|||||1408|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785967T>A||||||;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.15;QD=31.61;SOR=0.900;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785974,".","T","C","1/1","0/0",2350.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4272T>C|||||1184|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1351T>C|||||1184|,C|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5081T>C|||||1415|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1671T>C|||||1415|,C|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785974T>C||||||;DP=93;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=28.66;SOR=0.853;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785986,".","C","A","1/1","0/0",2305.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4260C>A|||||1172|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1339C>A|||||1172|,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5093C>A|||||1427|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1683C>A|||||1427|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785986C>A||||||;DP=93;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=28.32;SOR=0.853;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1785993,".","G","T","1/1","0/0",2350.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4253G>T|||||1165|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1332G>T|||||1165|,T|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5100G>T|||||1434|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1690G>T|||||1434|,T|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1785993G>T||||||;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=31.83;SOR=0.909;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1786007,".","A","AC","1/1","0/0",2116.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AC|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4239_-4238insC|||||1150|WARNING_TRANSCRIPT_NO_START_CODON,AC|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1318_-1317insC|||||1150|,AC|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5114_*5115insC|||||1449|WARNING_TRANSCRIPT_NO_START_CODON,AC|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1704_*1705insC|||||1449|,AC|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1786007_1786008insC||||||;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=25.81;SOR=0.941;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1786013,".","T","TA","1/1","0/0",1936.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TA|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4233_-4232insA|||||1144|WARNING_TRANSCRIPT_NO_START_CODON,TA|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1312_-1311insA|||||1144|,TA|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5120_*5121insA|||||1455|WARNING_TRANSCRIPT_NO_START_CODON,TA|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1710_*1711insA|||||1455|,TA|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1786013_1786014insA||||||;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=30.82;SOR=0.784;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1786025,".","T","C","1/1","0/0",1990.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-4221T>C|||||1133|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-1300T>C|||||1133|,C|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5132T>C|||||1466|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*1722T>C|||||1466|,C|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1786025T>C||||||;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=28.52;SOR=0.739;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1786635,".","A","G","1/1","0/0",2665.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-3611A>G|||||523|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-690A>G|||||523|,G|upstream_gene_variant|MODIFIER|LOC101493767|gene-LOC101493767|transcript|XM_004485633.3|protein_coding||c.-7051A>G|||||4524|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101493767|gene-LOC101493767|transcript|XM_004485634.3|protein_coding||c.-7051A>G|||||4524|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5742A>G|||||2076|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*2332A>G|||||2076|,G|downstream_gene_variant|MODIFIER|exon-XM_004485633.3-1|GENE_exon-XM_004485633.3-1|transcript|rna-XM_004485633.3|protein_coding||c.*4793T>C|||||4524|,G|downstream_gene_variant|MODIFIER|exon-XM_004485634.3-1|GENE_exon-XM_004485634.3-1|transcript|rna-XM_004485634.3|protein_coding||c.*4793T>C|||||4524|,G|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1786635A>G||||||;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.41;QD=33.04;SOR=0.871;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1786745,".","AC","A","1/1","0/0",2706.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.-3500delC|||||412|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.-579delC|||||412|,A|upstream_gene_variant|MODIFIER|LOC101493767|gene-LOC101493767|transcript|XM_004485633.3|protein_coding||c.-6940delC|||||4413|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101493767|gene-LOC101493767|transcript|XM_004485634.3|protein_coding||c.-6940delC|||||4413|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101493116|gene-LOC101493116|transcript|XM_004485632.3|protein_coding||c.*5853delC|||||2187|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485632.3-1|GENE_exon-XM_004485632.3-1|transcript|rna-XM_004485632.3|protein_coding||c.*2443delC|||||2187|,A|downstream_gene_variant|MODIFIER|exon-XM_004485633.3-1|GENE_exon-XM_004485633.3-1|transcript|rna-XM_004485633.3|protein_coding||c.*4682delG|||||4413|,A|downstream_gene_variant|MODIFIER|exon-XM_004485634.3-1|GENE_exon-XM_004485634.3-1|transcript|rna-XM_004485634.3|protein_coding||c.*4682delG|||||4413|,A|intergenic_region|MODIFIER|exon-XM_004485632.3-1-exon-XM_012714867.2-1|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|intergenic_region|GENE_exon-XM_004485632.3-1-GENE_exon-XM_012714867.2-1|||n.1786746delC||||||;DP=119;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.59;QD=34.70;SOR=0.798;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1790913,".","TGACTTTGAA","T","1/1","0/0",451.38,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101493767|gene-LOC101493767|transcript|XM_004485633.3|protein_coding||c.-2772_-2764delGACTTTGAA|||||245|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101493767|gene-LOC101493767|transcript|XM_004485634.3|protein_coding||c.-2772_-2764delGACTTTGAA|||||245|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101493445|gene-LOC101493445|transcript|XM_012714867.2|protein_coding||c.*3756_*3764delGACTTTGAA|||||668|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_012714867.2-1|GENE_exon-XM_012714867.2-1|transcript|rna-XM_012714867.2|protein_coding||c.*1338_*1346delGACTTTGAA|||||668|,T|downstream_gene_variant|MODIFIER|exon-XM_004485633.3-1|GENE_exon-XM_004485633.3-1|transcript|rna-XM_004485633.3|protein_coding||c.*506_*514delTTCAAAGTC|||||245|,T|downstream_gene_variant|MODIFIER|exon-XM_004485634.3-1|GENE_exon-XM_004485634.3-1|transcript|rna-XM_004485634.3|protein_coding||c.*506_*514delTTCAAAGTC|||||245|,T|intergenic_region|MODIFIER|exon-XM_012714867.2-1-exon-XM_004485633.3-1|GENE_exon-XM_012714867.2-1-GENE_exon-XM_004485633.3-1|intergenic_region|GENE_exon-XM_012714867.2-1-GENE_exon-XM_004485633.3-1|||n.1790914_1790922delGACTTTGAA||||||;DP=52;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.78;QD=33.88;SOR=2.494;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1805906,".","G","T","1/1","0/0",2260.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-1831C>A|||||1831|,T|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2345G>T|||||2223|,T|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4640G>T|||||2024|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2239G>T|||||2024|,T|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*1933G>T|||||1831|,T|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4640G>T|||||2223|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1805906G>T||||||;DP=86;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.90;QD=32.62;SOR=1.345;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1805930,".","A","G","1/1","0/0",2098.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-1855T>C|||||1855|,G|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2369A>G|||||2247|,G|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4664A>G|||||2048|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2263A>G|||||2048|,G|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*1957A>G|||||1855|,G|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4664A>G|||||2247|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1805930A>G||||||;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.85;QD=26.26;SOR=1.136;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1806013,".","A","AG","1/1","0/0",1943.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AG|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-1939_-1938insC|||||1939|,AG|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2452_*2453insG|||||2331|,AG|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4747_*4748insG|||||2132|WARNING_TRANSCRIPT_NO_START_CODON,AG|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2346_*2347insG|||||2132|,AG|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2040_*2041insG|||||1939|,AG|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4747_*4748insG|||||2331|WARNING_TRANSCRIPT_NO_START_CODON,AG|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806013_1806014insG||||||;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.69;QD=30.75;SOR=0.732;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1806119,".","TC","T","1/1","0/0",1749.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2045delG|||||2045|,T|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2559delC|||||2437|,T|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4854delC|||||2238|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2453delC|||||2238|,T|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2147delC|||||2045|,T|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4854delC|||||2437|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806120delC||||||;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.93;QD=34.99;SOR=0.952;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1806168,".","G","C","1/1","0/0",2303.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2093C>G|||||2093|,C|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2607G>C|||||2485|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4902G>C|||||2286|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2501G>C|||||2286|,C|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2195G>C|||||2093|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4902G>C|||||2485|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806168G>C||||||;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.07;QD=31.82;SOR=0.730;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1806169,".","GTTTTTT","G","1/1","0/0",2294.38,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2100_-2095delAAAAAA|||||2095|,G|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2609_*2614delTTTTTT|||||2487|,G|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4904_*4909delTTTTTT|||||2288|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2503_*2508delTTTTTT|||||2288|,G|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2197_*2202delTTTTTT|||||2095|,G|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4904_*4909delTTTTTT|||||2487|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806170_1806175delTTTTTT||||||;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.94;QD=28.27;SOR=0.732;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1806177,".","ATAAAATATAGTTTGTTGGTT","A","1/1","0/0",2331.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2122_-2103delAACCAACAAACTATATTTTA|||||2103|,A|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2617_*2636delTAAAATATAGTTTGTTGGTT|||||2495|,A|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4912_*4931delTAAAATATAGTTTGTTGGTT|||||2296|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2511_*2530delTAAAATATAGTTTGTTGGTT|||||2296|,A|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2205_*2224delTAAAATATAGTTTGTTGGTT|||||2103|,A|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4912_*4931delTAAAATATAGTTTGTTGGTT|||||2495|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806178_1806197delTAAAATATAGTTTGTTGGTT||||||;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.94;QD=27.81;SOR=0.732;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1806248,".","G","T","1/1","0/0",2119.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2173C>A|||||2173|,T|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2687G>T|||||2565|,T|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4982G>T|||||2366|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2581G>T|||||2366|,T|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2275G>T|||||2173|,T|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4982G>T|||||2565|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806248G>T||||||;DP=87;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.37;QD=27.35;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1806264,".","T","C","1/1","0/0",2017.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2189A>G|||||2189|,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-11752T>C|||||4993|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-5712T>C|||||4993|,C|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2703T>C|||||2581|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*4998T>C|||||2382|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2597T>C|||||2382|,C|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2291T>C|||||2189|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*4998T>C|||||2581|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806264T>C||||||;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.02;QD=28.47;SOR=1.007;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1806308,".","T","C","1/1","0/0",1399.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2233A>G|||||2233|,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-11708T>C|||||4949|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-5668T>C|||||4949|,C|upstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.-5668T>C|||||4967|,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.-11708T>C|||||4967|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2747T>C|||||2625|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*5042T>C|||||2426|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2641T>C|||||2426|,C|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2335T>C|||||2233|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*5042T>C|||||2625|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806308T>C||||||;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.53;QD=23.72;SOR=1.034;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1806351,".","T","TTTTTATTTTTATTTTTA","1/1","0/0",2215.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TTTTTATTTTTATTTTTA|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-2277_-2276insTAAAAATAAAAATAAAA|||||2277|,TTTTTATTTTTATTTTTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-11665_-11664insTTTTATTTTTATTTTTA|||||4905|WARNING_TRANSCRIPT_NO_START_CODON,TTTTTATTTTTATTTTTA|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-5625_-5624insTTTTATTTTTATTTTTA|||||4905|,TTTTTATTTTTATTTTTA|upstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.-5625_-5624insTTTTATTTTTATTTTTA|||||4923|,TTTTTATTTTTATTTTTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.-11665_-11664insTTTTATTTTTATTTTTA|||||4923|WARNING_TRANSCRIPT_NO_START_CODON,TTTTTATTTTTATTTTTA|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*2790_*2791insTTTTATTTTTATTTTTA|||||2669|,TTTTTATTTTTATTTTTA|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*5085_*5086insTTTTATTTTTATTTTTA|||||2470|WARNING_TRANSCRIPT_NO_START_CODON,TTTTTATTTTTATTTTTA|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*2684_*2685insTTTTATTTTTATTTTTA|||||2470|,TTTTTATTTTTATTTTTA|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*2378_*2379insTTTTATTTTTATTTTTA|||||2277|,TTTTTATTTTTATTTTTA|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*5085_*5086insTTTTATTTTTATTTTTA|||||2669|WARNING_TRANSCRIPT_NO_START_CODON,TTTTTATTTTTATTTTTA|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1806351_1806352insTTTTATTTTTATTTTTA||||||;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.93;QD=29.41;SOR=1.157;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1807149,".","A","ATT","1/1","0/0",2386.38,"PASS","AC=2;AF=0.500;AN=4;ANN=ATT|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-3075_-3074insAA|||||3075|,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-10867_-10866insTT|||||4107|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-4827_-4826insTT|||||4107|,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.-4827_-4826insTT|||||4125|,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.-4827_-4826insTT|||||4243|,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.-4827_-4826insTT|||||4243|,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-4827_-4826insTT|||||4647|,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-4827_-4826insTT|||||4654|,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-4827_-4826insTT|||||4681|,ATT|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-4827_-4826insTT|||||4683|,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.-10867_-10866insTT|||||4125|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.-10867_-10866insTT|||||4243|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.-10867_-10866insTT|||||4243|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-10867_-10866insTT|||||4647|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-10867_-10866insTT|||||4654|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-9872_-9871insTT|||||4681|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-7477_-7476insTT|||||4683|WARNING_TRANSCRIPT_NO_START_CODON,ATT|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*3588_*3589insTT|||||3467|,ATT|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*5883_*5884insTT|||||3268|WARNING_TRANSCRIPT_NO_START_CODON,ATT|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*3482_*3483insTT|||||3268|,ATT|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*3176_*3177insTT|||||3075|,ATT|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*5883_*5884insTT|||||3467|WARNING_TRANSCRIPT_NO_START_CODON,ATT|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1807149_1807150insTT||||||;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.34;QD=28.83;SOR=0.846;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1807151,".","G","GTTGCAGTA","1/1","0/0",2431.38,"PASS","AC=2;AF=0.500;AN=4;ANN=GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-3077_-3076insTACTGCAA|||||3077|,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-10865_-10864insTTGCAGTA|||||4105|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4105|,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4123|,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4241|,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4241|,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4645|,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4652|,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4679|,GTTGCAGTA|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-4825_-4824insTTGCAGTA|||||4681|,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.-10865_-10864insTTGCAGTA|||||4123|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.-10865_-10864insTTGCAGTA|||||4241|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.-10865_-10864insTTGCAGTA|||||4241|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-10865_-10864insTTGCAGTA|||||4645|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-10865_-10864insTTGCAGTA|||||4652|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-9870_-9869insTTGCAGTA|||||4679|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-7475_-7474insTTGCAGTA|||||4681|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*3590_*3591insTTGCAGTA|||||3469|,GTTGCAGTA|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*5885_*5886insTTGCAGTA|||||3270|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*3484_*3485insTTGCAGTA|||||3270|,GTTGCAGTA|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*3178_*3179insTTGCAGTA|||||3077|,GTTGCAGTA|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*5885_*5886insTTGCAGTA|||||3469|WARNING_TRANSCRIPT_NO_START_CODON,GTTGCAGTA|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1807151_1807152insTTGCAGTA||||||;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.25;QD=28.99;SOR=0.808;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1807170,".","T","C","1/1","0/0",1990.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-3095A>G|||||3095|,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-10846T>C|||||4087|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-4806T>C|||||4087|,C|upstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.-4806T>C|||||4105|,C|upstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.-4806T>C|||||4223|,C|upstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.-4806T>C|||||4223|,C|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-4806T>C|||||4627|,C|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-4806T>C|||||4634|,C|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-4806T>C|||||4661|,C|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-4806T>C|||||4663|,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.-10846T>C|||||4105|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.-10846T>C|||||4223|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.-10846T>C|||||4223|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-10846T>C|||||4627|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-10846T>C|||||4634|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-9851T>C|||||4661|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-7456T>C|||||4663|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485636.3-1|GENE_exon-XM_004485636.3-1|transcript|rna-XM_004485636.3|protein_coding||c.*3609T>C|||||3487|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485635.3|protein_coding||c.*5904T>C|||||3288|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485635.3-1|GENE_exon-XM_004485635.3-1|transcript|rna-XM_004485635.3|protein_coding||c.*3503T>C|||||3288|,C|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*3197T>C|||||3095|,C|downstream_gene_variant|MODIFIER|LOC101494303|gene-LOC101494303|transcript|XM_004485636.3|protein_coding||c.*5904T>C|||||3487|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1807170T>C||||||;DP=82;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.88;QD=28.17;SOR=0.883;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1809030,".","AAAAATT","A","1/1","0/0",316.44,"map;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_003471401.1-1|GENE_exon-XR_003471401.1-1|transcript|rna-XR_003471401.1|pseudogene||n.-4961_-4956delAATTTT|||||4956|,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-8985_-8980delAAAATT|||||2226|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-2945_-2940delAAAATT|||||2226|,A|upstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.-2945_-2940delAAAATT|||||2244|,A|upstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.-2945_-2940delAAAATT|||||2362|,A|upstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.-2945_-2940delAAAATT|||||2362|,A|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-2945_-2940delAAAATT|||||2766|,A|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-2945_-2940delAAAATT|||||2773|,A|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-2945_-2940delAAAATT|||||2800|,A|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-2945_-2940delAAAATT|||||2802|,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.-8985_-8980delAAAATT|||||2244|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.-8985_-8980delAAAATT|||||2362|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.-8985_-8980delAAAATT|||||2362|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-8985_-8980delAAAATT|||||2766|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-8985_-8980delAAAATT|||||2773|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-7990_-7985delAAAATT|||||2800|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-5595_-5590delAAAATT|||||2802|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC113785261|gene-LOC113785261|transcript|XR_003471401.1|snRNA||n.*5058_*5063delAAAATT|||||4956|,A|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1809031_1809036delAAAATT||||||;DP=18;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=46.80;QD=27.77;SOR=4.407;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1810788,".","A","C","1/1","0/0",234.42,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.-7228A>C|||||469|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.-1188A>C|||||469|,C|upstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.-1188A>C|||||487|,C|upstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.-1188A>C|||||605|,C|upstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.-1188A>C|||||605|,C|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-1188A>C|||||1009|,C|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-1188A>C|||||1016|,C|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-1188A>C|||||1043|,C|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-1188A>C|||||1045|,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.-7228A>C|||||487|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.-7228A>C|||||605|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.-7228A>C|||||605|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-7228A>C|||||1009|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-7228A>C|||||1016|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-6233A>C|||||1043|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-3838A>C|||||1045|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XR_003471401.1-1-exon-XM_027332643.1-1|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|intergenic_region|GENE_exon-XR_003471401.1-1-GENE_exon-XM_027332643.1-1|||n.1810788A>C||||||;DP=45;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.58;QD=21.31;SOR=2.494;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1811565,".","C","T","1/1","0/0",2080.42,"MQ40","AC=2;AF=0.500;AN=4;ANN=T|5_prime_UTR_premature_start_codon_gain_variant|LOW|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/10|c.-109C>T||||||,T|5_prime_UTR_premature_start_codon_gain_variant|LOW|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/10|c.-104C>T||||||,T|5_prime_UTR_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/10|c.-109C>T|||||411|,T|5_prime_UTR_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/10|c.-104C>T|||||411|,T|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-411C>T|||||232|,T|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-411C>T|||||239|,T|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-411C>T|||||266|,T|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-411C>T|||||268|,T|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-6451C>T|||||232|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-6451C>T|||||239|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-5456C>T|||||266|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-3061C>T|||||268|WARNING_TRANSCRIPT_NO_START_CODON,T|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-17+234C>T||||||,T|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-12+234C>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=79;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=35.31;QD=28.15;SOR=0.874;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1811580,".","C","A","1/1","0/0",2104.42,"MQ40","AC=2;AF=0.500;AN=4;ANN=A|5_prime_UTR_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/10|c.-94C>A|||||396|,A|5_prime_UTR_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/10|c.-89C>A|||||396|,A|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-396C>A|||||217|,A|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-396C>A|||||224|,A|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-396C>A|||||251|,A|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-396C>A|||||253|,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-6436C>A|||||217|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-6436C>A|||||224|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-5441C>A|||||251|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-3046C>A|||||253|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-17+249C>A||||||,A|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-12+249C>A||||||,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=79;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=36.94;QD=32.36;SOR=1.203;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1811586,".","T","G","1/1","0/0",2063.42,"MQ40","AC=2;AF=0.500;AN=4;ANN=G|5_prime_UTR_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/10|c.-88T>G|||||390|,G|5_prime_UTR_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/10|c.-83T>G|||||390|,G|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-390T>G|||||211|,G|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-390T>G|||||218|,G|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-390T>G|||||245|,G|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-390T>G|||||247|,G|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-6430T>G|||||211|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-6430T>G|||||218|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-5435T>G|||||245|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-3040T>G|||||247|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-17+255T>G||||||,G|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-12+255T>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=80;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=37.58;QD=31.20;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1811628,".","A","AATGTT","1/1","0/0",1878.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AATGTT|5_prime_UTR_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/10|c.-42_-41insTATGT|||||343|INFO_REALIGN_3_PRIME,AATGTT|5_prime_UTR_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/10|c.-37_-36insTATGT|||||343|INFO_REALIGN_3_PRIME,AATGTT|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-348_-347insATGTT|||||168|,AATGTT|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-348_-347insATGTT|||||175|,AATGTT|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-348_-347insATGTT|||||202|,AATGTT|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-348_-347insATGTT|||||204|,AATGTT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-6388_-6387insATGTT|||||168|WARNING_TRANSCRIPT_NO_START_CODON,AATGTT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-6388_-6387insATGTT|||||175|WARNING_TRANSCRIPT_NO_START_CODON,AATGTT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-5393_-5392insATGTT|||||202|WARNING_TRANSCRIPT_NO_START_CODON,AATGTT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-2998_-2997insATGTT|||||204|WARNING_TRANSCRIPT_NO_START_CODON,AATGTT|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-17+301_-17+302insTATGT||||||INFO_REALIGN_3_PRIME,AATGTT|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-12+301_-12+302insTATGT||||||INFO_REALIGN_3_PRIME,AATGTT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME,AATGTT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME,AATGTT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME,AATGTT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME;DP=77;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=41.17;QD=33.27;SOR=0.836;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1811791,".","A","ACT","1/1","0/0",2479.38,"PASS","AC=2;AF=0.500;AN=4;ANN=ACT|upstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.-185_-184insCT|||||5|,ACT|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-185_-184insCT|||||12|,ACT|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-185_-184insCT|||||39|,ACT|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-185_-184insCT|||||41|,ACT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.-6225_-6224insCT|||||5|WARNING_TRANSCRIPT_NO_START_CODON,ACT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-6225_-6224insCT|||||12|WARNING_TRANSCRIPT_NO_START_CODON,ACT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-5230_-5229insCT|||||39|WARNING_TRANSCRIPT_NO_START_CODON,ACT|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-2835_-2834insCT|||||41|WARNING_TRANSCRIPT_NO_START_CODON,ACT|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-16-169_-16-168insCT||||||,ACT|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-11-174_-11-173insCT||||||,ACT|intron_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/9|c.-17+134_-17+135insCT||||||,ACT|intron_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/9|c.-12+134_-12+135insCT||||||,ACT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,ACT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,ACT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,ACT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.27;QD=33.60;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1811800,".","C","G","1/1","0/0",2487.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|5_prime_UTR_premature_start_codon_gain_variant|LOW|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|1/10|c.-30C>G||||||,G|5_prime_UTR_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|1/10|c.-30C>G|||||176|,G|upstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.-176C>G|||||4|,G|upstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.-176C>G|||||31|,G|upstream_gene_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding||c.-176C>G|||||33|,G|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.-6216C>G|||||4|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.-5221C>G|||||31|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||c.-2826C>G|||||33|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-16-160C>G||||||,G|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-11-165C>G||||||,G|intron_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/9|c.-17+143C>G||||||,G|intron_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/9|c.-12+143C>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.34;QD=31.15;SOR=0.800;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1811875,".","A","T","1/1","0/0",2485.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|5_prime_UTR_premature_start_codon_gain_variant|LOW|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|1/10|c.-101A>T||||||,T|5_prime_UTR_premature_start_codon_gain_variant|LOW|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|1/9|c.-101A>T||||||,T|5_prime_UTR_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|1/10|c.-101A>T|||||101|,T|5_prime_UTR_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|1/9|c.-101A>T|||||101|,T|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-16-85A>T||||||,T|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-11-90A>T||||||,T|intron_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/9|c.-16-85A>T||||||,T|intron_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/9|c.-11-90A>T||||||,T|intron_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|1/9|c.-12+57A>T||||||,T|intron_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|1/9|c.-17+57A>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.40;QD=32.13;SOR=0.922;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1811876,".","G","C","1/1","0/0",2485.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|5_prime_UTR_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|1/10|c.-100G>C|||||100|,C|5_prime_UTR_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|1/9|c.-100G>C|||||100|,C|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|1/9|c.-16-84G>C||||||,C|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|1/9|c.-11-89G>C||||||,C|intron_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|1/9|c.-16-84G>C||||||,C|intron_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|1/9|c.-11-89G>C||||||,C|intron_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|1/9|c.-12+58G>C||||||,C|intron_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|1/9|c.-17+58G>C||||||,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.40;QD=29.75;SOR=0.922;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1812000,".","G","C","1/1","0/0",1361.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|missense_variant|MODERATE|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|2/10|c.25G>C|p.Glu9Gln|116/1462|25/1356|9/451||,C|missense_variant|MODERATE|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|2/10|c.25G>C|p.Glu9Gln|93/1439|25/1356|9/451||,C|missense_variant|MODERATE|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|2/10|c.25G>C|p.Glu9Gln|306/1652|25/1356|9/451||,C|missense_variant|MODERATE|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|2/10|c.25G>C|p.Glu9Gln|301/1647|25/1356|9/451||,C|missense_variant|MODERATE|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|2/10|c.25G>C|p.Glu9Gln|58/1404|25/1356|9/451||,C|missense_variant|MODERATE|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|2/10|c.25G>C|p.Glu9Gln|56/1402|25/1356|9/451||,C|missense_variant|MODERATE|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|1/10|c.25G>C|p.Glu9Gln|170/1501|25/1281|9/426||,C|missense_variant|MODERATE|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|1/9|c.25G>C|p.Glu9Gln|168/1601|25/1260|9/419||,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=95;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.62;QD=21.96;SOR=0.758;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1812744,".","C","CTTCCACATAGCTTCATTCAAATTTTTACTCATGT","1/1","0/0",1008.38,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|5/9|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|5/9|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|5/9|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|5/9|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|5/9|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|5/9|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|4/9|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|splice_region_variant&intron_variant|LOW|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|4/8|c.447+7_447+8insTTCCACATAGCTTCATTCAAATTTTTACTCATGT||||||,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,CTTCCACATAGCTTCATTCAAATTTTTACTCATGT|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=52;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.61;QD=32.15;SOR=2.419;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1813652,".","G","T","1/1","0/0",1614.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|9/10|c.931G>T|p.Val311Phe|1022/1462|931/1356|311/451||,T|missense_variant|MODERATE|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|9/10|c.931G>T|p.Val311Phe|999/1439|931/1356|311/451||,T|missense_variant|MODERATE|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|9/10|c.931G>T|p.Val311Phe|1212/1652|931/1356|311/451||,T|missense_variant|MODERATE|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|9/10|c.931G>T|p.Val311Phe|1207/1647|931/1356|311/451||,T|missense_variant|MODERATE|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|9/10|c.931G>T|p.Val311Phe|964/1404|931/1356|311/451||,T|missense_variant|MODERATE|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|9/10|c.931G>T|p.Val311Phe|962/1402|931/1356|311/451||,T|missense_variant|MODERATE|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|8/10|c.931G>T|p.Val311Phe|1076/1501|931/1281|311/426||,T|missense_variant|MODERATE|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|8/9|c.931G>T|p.Val311Phe|1074/1601|931/1260|311/419||,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.64;QD=24.84;SOR=0.787;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1813664,".","A","T","1/1","0/0",1635.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|9/10|c.943A>T|p.Asn315Tyr|1034/1462|943/1356|315/451||,T|missense_variant|MODERATE|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|9/10|c.943A>T|p.Asn315Tyr|1011/1439|943/1356|315/451||,T|missense_variant|MODERATE|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|9/10|c.943A>T|p.Asn315Tyr|1224/1652|943/1356|315/451||,T|missense_variant|MODERATE|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|9/10|c.943A>T|p.Asn315Tyr|1219/1647|943/1356|315/451||,T|missense_variant|MODERATE|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|9/10|c.943A>T|p.Asn315Tyr|976/1404|943/1356|315/451||,T|missense_variant|MODERATE|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|9/10|c.943A>T|p.Asn315Tyr|974/1402|943/1356|315/451||,T|missense_variant|MODERATE|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|8/10|c.943A>T|p.Asn315Tyr|1088/1501|943/1281|315/426||,T|missense_variant|MODERATE|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|8/9|c.943A>T|p.Asn315Tyr|1086/1601|943/1260|315/419||,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.64;QD=24.78;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1813744,".","C","T","1/1","0/0",1456.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|synonymous_variant|LOW|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|9/10|c.1023C>T|p.Ile341Ile|1114/1462|1023/1356|341/451||,T|synonymous_variant|LOW|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|9/10|c.1023C>T|p.Ile341Ile|1091/1439|1023/1356|341/451||,T|synonymous_variant|LOW|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|9/10|c.1023C>T|p.Ile341Ile|1304/1652|1023/1356|341/451||,T|synonymous_variant|LOW|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|9/10|c.1023C>T|p.Ile341Ile|1299/1647|1023/1356|341/451||,T|synonymous_variant|LOW|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|9/10|c.1023C>T|p.Ile341Ile|1056/1404|1023/1356|341/451||,T|synonymous_variant|LOW|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|9/10|c.1023C>T|p.Ile341Ile|1054/1402|1023/1356|341/451||,T|synonymous_variant|LOW|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|8/10|c.1023C>T|p.Ile341Ile|1168/1501|1023/1281|341/426||,T|synonymous_variant|LOW|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|8/9|c.1023C>T|p.Ile341Ile|1166/1601|1023/1260|341/419||,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.18;QD=25.55;SOR=0.960;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1813935,".","ATTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC","A","1/1","0/0",812.38,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|9/9|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|9/9|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|intron_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|9/9|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|intron_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|9/9|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|intron_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|9/9|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|intron_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|9/9|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|intron_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|8/9|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|intron_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|8/8|c.1149+66_1149+109delTTTTTTTTTATATCTCTGCTTTTATTATATTTCTCTCCTACATC||||||,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=53;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=48.29;QD=35.65;SOR=0.793;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1814296,".","A","G","1/1","0/0",1168.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|9/9|c.1149+426A>G||||||,G|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|9/9|c.1149+426A>G||||||,G|intron_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|9/9|c.1149+426A>G||||||,G|intron_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|9/9|c.1149+426A>G||||||,G|intron_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|9/9|c.1149+426A>G||||||,G|intron_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|9/9|c.1149+426A>G||||||,G|intron_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|8/9|c.1150-22A>G||||||,G|intron_variant|MODIFIER|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|8/8|c.1150-22A>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=64;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.37;QD=26.81;SOR=2.303;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1814314,".","G","A","1/1","0/0",1090.42,"mrd30","AC=2;AF=0.500;AN=4;ANN=A|splice_region_variant&intron_variant|LOW|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding|8/9|c.1150-4G>A||||||,A|splice_region_variant&intron_variant|LOW|exon-XM_027332660.1-1|GENE_exon-XM_027332660.1-1|transcript|rna-XM_027332660.1|protein_coding|8/8|c.1150-4G>A||||||,A|intron_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding|9/9|c.1149+444G>A||||||,A|intron_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding|9/9|c.1149+444G>A||||||,A|intron_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding|9/9|c.1149+444G>A||||||,A|intron_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding|9/9|c.1149+444G>A||||||,A|intron_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding|9/9|c.1149+444G>A||||||,A|intron_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding|9/9|c.1149+444G>A||||||,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332660.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=59;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.09;QD=27.66;SOR=2.584;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1821406,".","T","TTCAATAAAATTTTTATTACAAAAA","1/1","0/0",1729.38,"mrd30","AC=2;AF=0.500;AN=4;ANN=TTCAATAAAATTTTTATTACAAAAA|upstream_gene_variant|MODIFIER|LOC101508582|gene-LOC101508582|transcript|XM_027330155.1|protein_coding||c.-6797_-6796insTCAATAAAATTTTTATTACAAAAA|||||1857|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|upstream_gene_variant|MODIFIER|exon-XM_027330155.1-1|GENE_exon-XM_027330155.1-1|transcript|rna-XM_027330155.1|protein_coding||c.-2376_-2375insTCAATAAAATTTTTATTACAAAAA|||||1857|WARNING_TRANSCRIPT_NO_STOP_CODON,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.*10149_*10150insTCAATAAAATTTTTATTACAAAAA|||||3391|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.*3405_*3406insTCAATAAAATTTTTATTACAAAAA|||||3391|,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.*3405_*3406insTCAATAAAATTTTTATTACAAAAA|||||3391|,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.*3405_*3406insTCAATAAAATTTTTATTACAAAAA|||||3391|,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.*3405_*3406insTCAATAAAATTTTTATTACAAAAA|||||3391|,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.*3405_*3406insTCAATAAAATTTTTATTACAAAAA|||||3391|,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.*3405_*3406insTCAATAAAATTTTTATTACAAAAA|||||3391|,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.*4460_*4461insTCAATAAAATTTTTATTACAAAAA|||||4386|,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.*10131_*10132insTCAATAAAATTTTTATTACAAAAA|||||3391|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.*10013_*10014insTCAATAAAATTTTTATTACAAAAA|||||3391|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.*10013_*10014insTCAATAAAATTTTTATTACAAAAA|||||3391|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.*9609_*9610insTCAATAAAATTTTTATTACAAAAA|||||3391|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.*9602_*9603insTCAATAAAATTTTTATTACAAAAA|||||3391|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.*9575_*9576insTCAATAAAATTTTTATTACAAAAA|||||4386|WARNING_TRANSCRIPT_NO_START_CODON,TTCAATAAAATTTTTATTACAAAAA|intergenic_region|MODIFIER|exon-XM_027332643.1-1-exon-XM_027330155.1-1|GENE_exon-XM_027332643.1-1-GENE_exon-XM_027330155.1-1|intergenic_region|GENE_exon-XM_027332643.1-1-GENE_exon-XM_027330155.1-1|||n.1821406_1821407insTCAATAAAATTTTTATTACAAAAA||||||;DP=65;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.36;QD=31.08;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1821424,".","T","C","1/1","0/0",1225.42,"mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101508582|gene-LOC101508582|transcript|XM_027330155.1|protein_coding||c.-6779T>C|||||1840|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_027330155.1-1|GENE_exon-XM_027330155.1-1|transcript|rna-XM_027330155.1|protein_coding||c.-2358T>C|||||1840|WARNING_TRANSCRIPT_NO_STOP_CODON,C|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.*10167T>C|||||3408|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.*3423T>C|||||3408|,C|downstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.*3423T>C|||||3408|,C|downstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.*3423T>C|||||3408|,C|downstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.*3423T>C|||||3408|,C|downstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.*3423T>C|||||3408|,C|downstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.*3423T>C|||||3408|,C|downstream_gene_variant|MODIFIER|exon-XM_027332659.1-1|GENE_exon-XM_027332659.1-1|transcript|rna-XM_027332659.1|protein_coding||c.*4478T>C|||||4403|,C|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.*10149T>C|||||3408|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.*10031T>C|||||3408|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.*10031T>C|||||3408|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.*9627T>C|||||3408|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.*9620T>C|||||3408|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332659.1|protein_coding||c.*9593T>C|||||4403|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_027332643.1-1-exon-XM_027330155.1-1|GENE_exon-XM_027332643.1-1-GENE_exon-XM_027330155.1-1|intergenic_region|GENE_exon-XM_027332643.1-1-GENE_exon-XM_027330155.1-1|||n.1821424T>C||||||;DP=61;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.13;QD=30.84;SOR=1.101;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1822473,".","AG","A","1/1","0/0",1924.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101508582|gene-LOC101508582|transcript|XM_027330155.1|protein_coding||c.-5729delG|||||790|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_027330155.1-1|GENE_exon-XM_027330155.1-1|transcript|rna-XM_027330155.1|protein_coding||c.-1308delG|||||790|WARNING_TRANSCRIPT_NO_STOP_CODON,A|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332643.1|protein_coding||c.*11217delG|||||4458|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_027332643.1-1|GENE_exon-XM_027332643.1-1|transcript|rna-XM_027332643.1|protein_coding||c.*4473delG|||||4458|,A|downstream_gene_variant|MODIFIER|exon-XM_027332651.1-1|GENE_exon-XM_027332651.1-1|transcript|rna-XM_027332651.1|protein_coding||c.*4473delG|||||4458|,A|downstream_gene_variant|MODIFIER|exon-XM_027332645.1-1|GENE_exon-XM_027332645.1-1|transcript|rna-XM_027332645.1|protein_coding||c.*4473delG|||||4458|,A|downstream_gene_variant|MODIFIER|exon-XM_027332648.1-1|GENE_exon-XM_027332648.1-1|transcript|rna-XM_027332648.1|protein_coding||c.*4473delG|||||4458|,A|downstream_gene_variant|MODIFIER|exon-XM_027332657.1-1|GENE_exon-XM_027332657.1-1|transcript|rna-XM_027332657.1|protein_coding||c.*4473delG|||||4458|,A|downstream_gene_variant|MODIFIER|exon-XM_027332652.1-1|GENE_exon-XM_027332652.1-1|transcript|rna-XM_027332652.1|protein_coding||c.*4473delG|||||4458|,A|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332651.1|protein_coding||c.*11199delG|||||4458|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332645.1|protein_coding||c.*11081delG|||||4458|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332648.1|protein_coding||c.*11081delG|||||4458|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332657.1|protein_coding||c.*10677delG|||||4458|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101494927|gene-LOC101494927|transcript|XM_027332652.1|protein_coding||c.*10670delG|||||4458|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_027332643.1-1-exon-XM_027330155.1-1|GENE_exon-XM_027332643.1-1-GENE_exon-XM_027330155.1-1|intergenic_region|GENE_exon-XM_027332643.1-1-GENE_exon-XM_027330155.1-1|||n.1822474delG||||||;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.15;QD=33.18;SOR=0.914;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1838100,".","T","C","1/1","0/0",2136.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-2151A>G|||||2018|,C|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*6992T>C|||||2018|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1838100T>C||||||;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=52.37;QD=30.18;SOR=1.051;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1838692,".","T","C","1/1","0/0",967.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-2743A>G|||||2610|,C|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*7584T>C|||||2610|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1838692T>C||||||;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.58;QD=21.99;SOR=0.990;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1838743,".","TA","T","1/1","0/0",975.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-2795delT|||||2662|,T|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*7636delA|||||2662|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1838744delA||||||;DP=82;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.16;QD=25.67;SOR=1.040;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1838833,".","T","TTTGGGCTCATGTACCGCTCAAAAGAAAACG","1/1","0/0",949.38,"mrd30","AC=2;AF=0.500;AN=4;ANN=TTTGGGCTCATGTACCGCTCAAAAGAAAACG|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-2885_-2884insCGTTTTCTTTTGAGCGGTACATGAGCCCAA|||||2752|,TTTGGGCTCATGTACCGCTCAAAAGAAAACG|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*7725_*7726insTTGGGCTCATGTACCGCTCAAAAGAAAACG|||||2752|WARNING_TRANSCRIPT_NO_START_CODON,TTTGGGCTCATGTACCGCTCAAAAGAAAACG|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1838833_1838834insTTGGGCTCATGTACCGCTCAAAAGAAAACG||||||;DP=71;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=44.13;QD=37.34;SOR=1.708;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1838897,".","CTGGT","C","1/1","0/0",140.77,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-2952_-2949delACCA|||||2816|,C|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*7790_*7793delTGGT|||||2816|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1838898_1838901delTGGT||||||;DP=49;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=28.15;SOR=1.022;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1838904,".","GGGCTGGCTCTATTTATGCAACCGGTGTACT","G","1/1","0/0",140.77,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-2985_-2956delAGTACACCGGTTGCATAAATAGAGCCAGCC|||||2823|,G|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*7797_*7826delGGCTGGCTCTATTTATGCAACCGGTGTACT|||||2823|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1838905_1838934delGGCTGGCTCTATTTATGCAACCGGTGTACT||||||;DP=49;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=28.15;SOR=1.022;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1838948,".","C","T","1/1","0/0",221.47,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-2999G>A|||||2866|,T|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*7840C>T|||||2866|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1838948C>T||||||;DP=52;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.50;QD=27.68;SOR=1.863;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1839718,".","T","G","1/1","0/0",1646.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485638.3-1|GENE_exon-XM_004485638.3-1|transcript|rna-XM_004485638.3|protein_coding||c.-3769A>C|||||3636|,G|downstream_gene_variant|MODIFIER|LOC101495478|gene-LOC101495478|transcript|XM_004485638.3|protein_coding||c.*8610T>G|||||3636|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485638.3-1-exon-XM_004485639.3-1|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|intergenic_region|GENE_exon-XM_004485638.3-1-GENE_exon-XM_004485639.3-1|||n.1839718T>G||||||;DP=118;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.59;QD=22.25;SOR=0.864;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1849192,".","C","G","1/1","0/0",1437.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|3/3|c.757G>C|p.Glu253Gln|883/1382|757/1074|253/357||,G|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=102;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.56;SOR=0.941;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1849714,".","T","TC","1/1","0/0",3327.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TC|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.267-33_267-32insG||||||,TC|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=117;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.57;QD=25.10;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1849715,".","A","C","1/1","0/0",3336.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.267-33T>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=117;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.57;QD=29.60;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1849741,".","C","G","1/1","0/0",1778.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.267-59G>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=117;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.30;QD=23.71;SOR=0.832;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1849755,".","C","A","1/1","0/0",1864.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.267-73G>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.83;ClippingRankSum=0.00;DP=118;ExcessHet=0.7918;FS=3.245;MLEAC=2;MLEAF=0.500;MQ=52.72;MQRankSum=0.597;QD=24.53;ReadPosRankSum=1.48;SOR=0.436;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1849773,".","G","T","1/1","0/0",2034.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.267-91C>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=123;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.19;QD=25.12;SOR=0.768;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1849809,".","A","G","1/1","0/0",1190.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.266+74T>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=115;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=52.06;QD=16.31;SOR=0.836;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1849836,".","A","G","1/1","0/0",1547.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.266+47T>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=112;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.22;QD=22.11;SOR=1.163;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1849847,".","G","A","1/1","0/0",3029.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.266+36C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=112;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.47;QD=23.03;SOR=1.042;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1849856,".","G","C","1/1","0/0",3082.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.266+27C>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=115;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.31;QD=28.72;SOR=0.864;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1849862,".","A","AT","1/1","0/0",2143.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AT|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.266+20_266+21insA||||||,AT|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=119;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.19;QD=28.20;SOR=0.746;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1849877,".","A","G","1/1","0/0",1594.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|splice_region_variant&intron_variant|LOW|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|2/2|c.266+6T>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=116;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=52.24;QD=21.26;SOR=0.719;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1850030,".","CAATT","C","1/1","0/0",2812.38,"PASS","AC=2;AF=0.500;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/2|c.137-22_137-19delAATT||||||,C|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=107;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.08;QD=28.36;SOR=0.925;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1850089,".","A","AT","1/1","0/0",2994.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AT|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/2|c.136+29_136+30insA||||||,AT|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=109;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.63;QD=27.27;SOR=0.949;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1850093,".","T","A","1/1","0/0",3035.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/2|c.136+26A>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=109;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.63;QD=28.06;SOR=0.949;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1850129,".","A","T","1/1","0/0",2824.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|synonymous_variant|LOW|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/3|c.126T>A|p.Pro42Pro|252/1382|126/1074|42/357||,T|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=110;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.94;QD=28.00;SOR=0.844;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1850153,".","A","G","1/1","0/0",2897.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|synonymous_variant|LOW|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/3|c.102T>C|p.Gly34Gly|228/1382|102/1074|34/357||,G|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=113;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.45;QD=23.76;SOR=0.749;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1850278,".","C","G","1/1","0/0",1603.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|5_prime_UTR_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/3|c.-24G>C|||||24|,G|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=109;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.97;QD=23.58;SOR=0.880;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1850343,".","G","A","1/1","0/0",1704.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|5_prime_UTR_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/3|c.-89C>T|||||89|,A|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=111;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.66;QD=24.35;SOR=1.085;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1850380,".","A","T","1/1","0/0",1450.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|5_prime_UTR_variant|MODIFIER|exon-XM_004485639.3-1|GENE_exon-XM_004485639.3-1|transcript|rna-XM_004485639.3|protein_coding|1/3|c.-126T>A|||||126|,T|non_coding_transcript_variant|MODIFIER|LOC101495806|gene-LOC101495806|transcript|XM_004485639.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=100;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.57;QD=24.58;SOR=0.726;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1858156,".","C","T","1/1","0/0",2125.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|splice_region_variant&intron_variant|LOW|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|6/8|c.923+7G>A||||||,T|splice_region_variant&intron_variant|LOW|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|6/8|c.962+7G>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=85;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.19;QD=26.74;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1858159,".","G","A","1/1","0/0",2170.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|splice_region_variant&intron_variant|LOW|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|6/8|c.923+4C>T||||||,A|splice_region_variant&intron_variant|LOW|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|6/8|c.962+4C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=85;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.19;QD=31.94;SOR=1.132;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1858226,".","A","G","1/1","0/0",2069.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|6/9|c.860T>C|p.Val287Ala|1079/1575|860/1191|287/396||,G|missense_variant|MODERATE|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|6/9|c.899T>C|p.Val300Ala|983/1452|899/1230|300/409||,G|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.29;QD=26.67;SOR=0.900;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1858509,".","T","C","1/1","0/0",1276.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|missense_variant|MODERATE|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|6/9|c.577A>G|p.Ile193Val|796/1575|577/1191|193/396||,C|missense_variant|MODERATE|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|6/9|c.616A>G|p.Ile206Val|700/1452|616/1230|206/409||,C|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.19;QD=21.63;SOR=0.726;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1858855,".","C","T","1/1","0/0",2240.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|5/8|c.546+279G>A||||||,T|intron_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|5/8|c.585+279G>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=44.61;QD=28.14;SOR=0.853;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1858938,".","G","GAC","1/1","0/0",1805.38,"PASS","AC=2;AF=0.500;AN=4;ANN=GAC|intron_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|5/8|c.546+195_546+196insGT||||||,GAC|intron_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|5/8|c.585+195_585+196insGT||||||,GAC|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,GAC|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=82;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=48.08;QD=28.66;SOR=0.741;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1861837,".","G","T","1/1","0/0",1189.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|1/9|c.58C>A|p.Pro20Thr|277/1575|58/1191|20/396||,T|missense_variant|MODERATE|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|1/9|c.92C>A|p.Thr31Asn|176/1452|92/1230|31/409||,T|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-3087G>T|||||2227|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-2441G>T|||||2227|,T|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-9579G>T|||||3338|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*3745C>A|||||3338|,T|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.41;QD=24.27;SOR=1.007;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1861887,".","A","G","1/1","0/0",650.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|1/9|c.8T>C|p.Leu3Pro|227/1575|8/1191|3/396||,G|synonymous_variant|LOW|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|1/9|c.42T>C|p.Ser14Ser|126/1452|42/1230|14/409||,G|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-3037A>G|||||2177|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-2391A>G|||||2177|,G|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-9529A>G|||||3288|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*3695T>C|||||3288|,G|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=81;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.47;QD=15.86;SOR=0.741;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1861926,".","C","A","1/1","0/0",890.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|start_lost|HIGH|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding|1/9|c.3G>T|p.Met1?|87/1452|3/1230|1/409||,A|5_prime_UTR_premature_start_codon_gain_variant|LOW|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|1/9|c.-32G>T||||||,A|5_prime_UTR_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding|1/9|c.-32G>T|||||32|,A|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2998C>A|||||2138|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-2352C>A|||||2138|,A|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-9490C>A|||||3249|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*3656G>T|||||3249|,A|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=77;ExcessHet=0.7918;FS=0.000;LOF=(exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|1|1.00);MLEAC=2;MLEAF=0.500;MQ=54.38;QD=24.07;SOR=1.270;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1862769,".","GAGTTT","G","1/1","0/0",362.4,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-880_-876delAAACT|||||657|,G|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-846_-842delAAACT|||||758|,G|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2154_-2150delAGTTT|||||1294|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1508_-1504delAGTTT|||||1294|,G|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8646_-8642delAGTTT|||||2405|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4417_-4413delAGTTT|||||4417|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6185_*6189delAGTTT|||||758|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2808_*2812delAAACT|||||2405|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6212_*6216delAGTTT|||||657|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862770_1862774delAGTTT||||||;DP=48;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=45.10;QD=31.66;SOR=0.892;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862776,".","GGAT","G","1/1","0/0",361.4,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-885_-883delATC|||||664|,G|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-851_-849delATC|||||765|,G|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2147_-2145delGAT|||||1287|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1501_-1499delGAT|||||1287|,G|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8639_-8637delGAT|||||2398|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4410_-4408delGAT|||||4410|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6192_*6194delGAT|||||765|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2803_*2805delATC|||||2398|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6219_*6221delGAT|||||664|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862777_1862779delGAT||||||;DP=48;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=45.10;QD=30.50;SOR=0.892;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862780,".","T","C","1/1","0/0",370.44,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-886A>G|||||667|,C|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-852A>G|||||768|,C|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2144T>C|||||1284|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1498T>C|||||1284|,C|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8636T>C|||||2395|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4407T>C|||||4407|,C|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6195T>C|||||768|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2802A>G|||||2395|,C|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6222T>C|||||667|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862780T>C||||||;DP=48;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=45.10;QD=30.81;SOR=0.892;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862784,".","AAC","A","1/1","0/0",316.43,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-892_-891delGT|||||672|,A|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-858_-857delGT|||||773|,A|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2139_-2138delAC|||||1279|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1493_-1492delAC|||||1279|,A|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8631_-8630delAC|||||2390|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4402_-4401delAC|||||4402|,A|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6200_*6201delAC|||||773|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2796_*2797delGT|||||2390|,A|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6227_*6228delAC|||||672|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862785_1862786delAC||||||;DP=46;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=44.60;QD=26.73;SOR=1.609;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862789,".","ATAGAAGAAAAT","A","1/1","0/0",316.43,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-906_-896delATTTTCTTCTA|||||677|,A|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-872_-862delATTTTCTTCTA|||||778|,A|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2134_-2124delTAGAAGAAAAT|||||1274|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1488_-1478delTAGAAGAAAAT|||||1274|,A|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8626_-8616delTAGAAGAAAAT|||||2385|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4397_-4387delTAGAAGAAAAT|||||4397|,A|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6205_*6215delTAGAAGAAAAT|||||778|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2782_*2792delATTTTCTTCTA|||||2385|,A|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6232_*6242delTAGAAGAAAAT|||||677|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862790_1862800delTAGAAGAAAAT||||||;DP=46;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=44.60;QD=30.74;SOR=1.609;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862804,".","CAGTATATGGTATTATGATAAA","C","1/1","0/0",316.43,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-931_-911delTTTATCATAATACCATATACT|||||692|,C|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-897_-877delTTTATCATAATACCATATACT|||||793|,C|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2119_-2099delAGTATATGGTATTATGATAAA|||||1259|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1473_-1453delAGTATATGGTATTATGATAAA|||||1259|,C|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8611_-8591delAGTATATGGTATTATGATAAA|||||2370|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4382_-4362delAGTATATGGTATTATGATAAA|||||4382|,C|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6220_*6240delAGTATATGGTATTATGATAAA|||||793|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2757_*2777delTTTATCATAATACCATATACT|||||2370|,C|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6247_*6267delAGTATATGGTATTATGATAAA|||||692|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862805_1862825delAGTATATGGTATTATGATAAA||||||;DP=47;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=46.64;QD=28.54;SOR=1.179;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862828,".","GTCTAGAATC","G","1/1","0/0",361.4,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-943_-935delGATTCTAGA|||||716|,G|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-909_-901delGATTCTAGA|||||817|,G|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2095_-2087delTCTAGAATC|||||1235|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1449_-1441delTCTAGAATC|||||1235|,G|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8587_-8579delTCTAGAATC|||||2346|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4358_-4350delTCTAGAATC|||||4358|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6244_*6252delTCTAGAATC|||||817|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2745_*2753delGATTCTAGA|||||2346|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6271_*6279delTCTAGAATC|||||716|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862829_1862837delTCTAGAATC||||||;DP=47;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=46.64;QD=32.83;SOR=1.179;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862841,".","T","A","1/1","0/0",370.44,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-947A>T|||||728|,A|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-913A>T|||||829|,A|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2083T>A|||||1223|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1437T>A|||||1223|,A|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8575T>A|||||2334|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4346T>A|||||4346|,A|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6256T>A|||||829|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2741A>T|||||2334|,A|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6283T>A|||||728|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862841T>A||||||;DP=45;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.15;QD=20.82;SOR=2.303;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862843,".","GGAACGTGGTCACA","G","1/1","0/0",406.39,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-962_-950delTGTGACCACGTTC|||||731|,G|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-928_-916delTGTGACCACGTTC|||||832|,G|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2080_-2068delGAACGTGGTCACA|||||1220|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1434_-1422delGAACGTGGTCACA|||||1220|,G|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8572_-8560delGAACGTGGTCACA|||||2331|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4343_-4331delGAACGTGGTCACA|||||4343|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6259_*6271delGAACGTGGTCACA|||||832|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2726_*2738delTGTGACCACGTTC|||||2331|,G|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6286_*6298delGAACGTGGTCACA|||||731|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862844_1862856delGAACGTGGTCACA||||||;DP=47;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.06;QD=26.64;SOR=2.833;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1862859,".","TTGGATA","T","1/1","0/0",406.39,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004485641.3-1|GENE_exon-XM_004485641.3-1|transcript|rna-XM_004485641.3|protein_coding||c.-971_-966delTATCCA|||||747|,T|upstream_gene_variant|MODIFIER|exon-XM_004485640.3-1|GENE_exon-XM_004485640.3-1|transcript|rna-XM_004485640.3|protein_coding||c.-937_-932delTATCCA|||||848|,T|upstream_gene_variant|MODIFIER|LOC101497320|gene-LOC101497320|transcript|XM_004485644.3|protein_coding||c.-2064_-2059delTGGATA|||||1204|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004485644.3-1|GENE_exon-XM_004485644.3-1|transcript|rna-XM_004485644.3|protein_coding||c.-1418_-1413delTGGATA|||||1204|,T|upstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.-8556_-8551delTGGATA|||||2315|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XR_003470020.1-1|GENE_exon-XR_003470020.1-1|transcript|rna-XR_003470020.1|pseudogene||n.-4327_-4322delTGGATA|||||4327|,T|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485640.3|protein_coding||c.*6275_*6280delTGGATA|||||848|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.*2717_*2722delTATCCA|||||2315|,T|downstream_gene_variant|MODIFIER|LOC101496129|gene-LOC101496129|transcript|XM_004485641.3|protein_coding||c.*6302_*6307delTGGATA|||||747|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485641.3-1-exon-XM_004485644.3-1|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|intergenic_region|GENE_exon-XM_004485641.3-1-GENE_exon-XM_004485644.3-1|||n.1862860_1862865delTGGATA||||||;DP=47;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=43.13;QD=32.46;SOR=1.179;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1876002,".","C","T","1/1","0/0",685.42,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.-4721G>A|||||4586|,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XM_004485643.3|protein_coding||c.-4356C>T|||||1746|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470017.1|pseudogene||n.-4355C>T|||||1347|,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470012.1|pseudogene||n.-4356C>T|||||1347|,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470015.1|pseudogene||n.-4356C>T|||||1347|,T|downstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.*10827C>T|||||4586|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XR_003470017.1-1|GENE_exon-XR_003470017.1-1|transcript|rna-XR_003470017.1|pseudogene||n.*1347G>A|||||1347|,T|downstream_gene_variant|MODIFIER|exon-XR_003470012.1-1|GENE_exon-XR_003470012.1-1|transcript|rna-XR_003470012.1|pseudogene||n.*1347G>A|||||1347|,T|downstream_gene_variant|MODIFIER|exon-XR_003470015.1-1|GENE_exon-XR_003470015.1-1|transcript|rna-XR_003470015.1|pseudogene||n.*1347G>A|||||1347|,T|downstream_gene_variant|MODIFIER|exon-XM_004485643.3-1|GENE_exon-XM_004485643.3-1|transcript|rna-XM_004485643.3|protein_coding||c.*2028G>A|||||1746|,T|intergenic_region|MODIFIER|exon-XM_012713291.2-1-exon-XR_003470017.1-1|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|intergenic_region|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|||n.1876002C>T||||||;DP=54;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=47.71;QD=26.81;SOR=0.818;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1876015,".","CAATTGAAAAGCAAATAAGCATGGCTTGAGTAGCGGCGAATTAA","C","1/1","0/0",676.38,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.-4777_-4735delTTAATTCGCCGCTACTCAAGCCATGCTTATTTGCTTTTCAATT|||||4600|,C|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XM_004485643.3|protein_coding||c.-4342_-4300delAATTGAAAAGCAAATAAGCATGGCTTGAGTAGCGGCGAATTAA|||||1732|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470017.1|pseudogene||n.-4341_-4299delAATTGAAAAGCAAATAAGCATGGCTTGAGTAGCGGCGAATTAA|||||1333|,C|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470012.1|pseudogene||n.-4342_-4300delAATTGAAAAGCAAATAAGCATGGCTTGAGTAGCGGCGAATTAA|||||1333|,C|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470015.1|pseudogene||n.-4342_-4300delAATTGAAAAGCAAATAAGCATGGCTTGAGTAGCGGCGAATTAA|||||1333|,C|downstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.*10841_*10883delAATTGAAAAGCAAATAAGCATGGCTTGAGTAGCGGCGAATTAA|||||4600|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XR_003470017.1-1|GENE_exon-XR_003470017.1-1|transcript|rna-XR_003470017.1|pseudogene||n.*1291_*1333delTTAATTCGCCGCTACTCAAGCCATGCTTATTTGCTTTTCAATT|||||1333|,C|downstream_gene_variant|MODIFIER|exon-XR_003470012.1-1|GENE_exon-XR_003470012.1-1|transcript|rna-XR_003470012.1|pseudogene||n.*1291_*1333delTTAATTCGCCGCTACTCAAGCCATGCTTATTTGCTTTTCAATT|||||1333|,C|downstream_gene_variant|MODIFIER|exon-XR_003470015.1-1|GENE_exon-XR_003470015.1-1|transcript|rna-XR_003470015.1|pseudogene||n.*1291_*1333delTTAATTCGCCGCTACTCAAGCCATGCTTATTTGCTTTTCAATT|||||1333|,C|downstream_gene_variant|MODIFIER|exon-XM_004485643.3-1|GENE_exon-XM_004485643.3-1|transcript|rna-XM_004485643.3|protein_coding||c.*1972_*2014delTTAATTCGCCGCTACTCAAGCCATGCTTATTTGCTTTTCAATT|||||1732|,C|intergenic_region|MODIFIER|exon-XM_012713291.2-1-exon-XR_003470017.1-1|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|intergenic_region|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|||n.1876016_1876058delAATTGAAAAGCAAATAAGCATGGCTTGAGTAGCGGCGAATTAA||||||;DP=54;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.48;QD=26.39;SOR=0.818;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1876071,".","T","TGCATCA","1/1","0/0",842.38,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=TGCATCA|upstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.-4791_-4790insTGATGC|||||4656|,TGCATCA|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XM_004485643.3|protein_coding||c.-4287_-4286insGCATCA|||||1676|WARNING_TRANSCRIPT_NO_START_CODON,TGCATCA|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470017.1|pseudogene||n.-4286_-4285insGCATCA|||||1277|,TGCATCA|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470012.1|pseudogene||n.-4287_-4286insGCATCA|||||1277|,TGCATCA|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470015.1|pseudogene||n.-4287_-4286insGCATCA|||||1277|,TGCATCA|downstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.*10896_*10897insGCATCA|||||4656|WARNING_TRANSCRIPT_NO_START_CODON,TGCATCA|downstream_gene_variant|MODIFIER|exon-XR_003470017.1-1|GENE_exon-XR_003470017.1-1|transcript|rna-XR_003470017.1|pseudogene||n.*1277_*1278insTGATGC|||||1277|,TGCATCA|downstream_gene_variant|MODIFIER|exon-XR_003470012.1-1|GENE_exon-XR_003470012.1-1|transcript|rna-XR_003470012.1|pseudogene||n.*1277_*1278insTGATGC|||||1277|,TGCATCA|downstream_gene_variant|MODIFIER|exon-XR_003470015.1-1|GENE_exon-XR_003470015.1-1|transcript|rna-XR_003470015.1|pseudogene||n.*1277_*1278insTGATGC|||||1277|,TGCATCA|downstream_gene_variant|MODIFIER|exon-XM_004485643.3-1|GENE_exon-XM_004485643.3-1|transcript|rna-XM_004485643.3|protein_coding||c.*1958_*1959insTGATGC|||||1676|,TGCATCA|intergenic_region|MODIFIER|exon-XM_012713291.2-1-exon-XR_003470017.1-1|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|intergenic_region|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|||n.1876071_1876072insGCATCA||||||;DP=56;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=47.61;QD=33.64;SOR=1.061;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1876104,".","T","A","1/1","0/0",597.42,"mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.-4823A>T|||||4688|,A|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XM_004485643.3|protein_coding||c.-4254T>A|||||1644|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470017.1|pseudogene||n.-4253T>A|||||1245|,A|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470012.1|pseudogene||n.-4254T>A|||||1245|,A|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470015.1|pseudogene||n.-4254T>A|||||1245|,A|downstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.*10929T>A|||||4688|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XR_003470017.1-1|GENE_exon-XR_003470017.1-1|transcript|rna-XR_003470017.1|pseudogene||n.*1245A>T|||||1245|,A|downstream_gene_variant|MODIFIER|exon-XR_003470012.1-1|GENE_exon-XR_003470012.1-1|transcript|rna-XR_003470012.1|pseudogene||n.*1245A>T|||||1245|,A|downstream_gene_variant|MODIFIER|exon-XR_003470015.1-1|GENE_exon-XR_003470015.1-1|transcript|rna-XR_003470015.1|pseudogene||n.*1245A>T|||||1245|,A|downstream_gene_variant|MODIFIER|exon-XM_004485643.3-1|GENE_exon-XM_004485643.3-1|transcript|rna-XM_004485643.3|protein_coding||c.*1926A>T|||||1644|,A|intergenic_region|MODIFIER|exon-XM_012713291.2-1-exon-XR_003470017.1-1|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|intergenic_region|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|||n.1876104T>A||||||;DP=64;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.03;QD=23.90;SOR=1.358;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1876275,".","TA","T","1/1","0/0",1427.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_012713291.2-1|GENE_exon-XM_012713291.2-1|transcript|rna-XM_012713291.2|protein_coding||c.-4995delT|||||4860|,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XM_004485643.3|protein_coding||c.-4082delA|||||1472|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470017.1|pseudogene||n.-4081delA|||||1073|,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470012.1|pseudogene||n.-4082delA|||||1073|,T|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470015.1|pseudogene||n.-4082delA|||||1073|,T|downstream_gene_variant|MODIFIER|LOC101508897|gene-LOC101508897|transcript|XM_012713291.2|protein_coding||c.*11101delA|||||4860|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XR_003470017.1-1|GENE_exon-XR_003470017.1-1|transcript|rna-XR_003470017.1|pseudogene||n.*1073delT|||||1073|,T|downstream_gene_variant|MODIFIER|exon-XR_003470012.1-1|GENE_exon-XR_003470012.1-1|transcript|rna-XR_003470012.1|pseudogene||n.*1073delT|||||1073|,T|downstream_gene_variant|MODIFIER|exon-XR_003470015.1-1|GENE_exon-XR_003470015.1-1|transcript|rna-XR_003470015.1|pseudogene||n.*1073delT|||||1073|,T|downstream_gene_variant|MODIFIER|exon-XM_004485643.3-1|GENE_exon-XM_004485643.3-1|transcript|rna-XM_004485643.3|protein_coding||c.*1754delT|||||1472|,T|intergenic_region|MODIFIER|exon-XM_012713291.2-1-exon-XR_003470017.1-1|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|intergenic_region|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|||n.1876276delA||||||;DP=100;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=52.01;QD=24.19;SOR=0.726;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1876420,".","A","ATACGTAGTTCGGTTGAG","1/1","0/0",2071.38,"MQ40","AC=2;AF=0.500;AN=4;ANN=ATACGTAGTTCGGTTGAG|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XM_004485643.3|protein_coding||c.-3938_-3937insTACGTAGTTCGGTTGAG|||||1327|WARNING_TRANSCRIPT_NO_START_CODON,ATACGTAGTTCGGTTGAG|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470017.1|pseudogene||n.-3937_-3936insTACGTAGTTCGGTTGAG|||||928|,ATACGTAGTTCGGTTGAG|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470012.1|pseudogene||n.-3938_-3937insTACGTAGTTCGGTTGAG|||||928|,ATACGTAGTTCGGTTGAG|upstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470015.1|pseudogene||n.-3938_-3937insTACGTAGTTCGGTTGAG|||||928|,ATACGTAGTTCGGTTGAG|downstream_gene_variant|MODIFIER|exon-XR_003470017.1-1|GENE_exon-XR_003470017.1-1|transcript|rna-XR_003470017.1|pseudogene||n.*928_*929insCTCAACCGAACTACGTA|||||928|,ATACGTAGTTCGGTTGAG|downstream_gene_variant|MODIFIER|exon-XR_003470012.1-1|GENE_exon-XR_003470012.1-1|transcript|rna-XR_003470012.1|pseudogene||n.*928_*929insCTCAACCGAACTACGTA|||||928|,ATACGTAGTTCGGTTGAG|downstream_gene_variant|MODIFIER|exon-XR_003470015.1-1|GENE_exon-XR_003470015.1-1|transcript|rna-XR_003470015.1|pseudogene||n.*928_*929insCTCAACCGAACTACGTA|||||928|,ATACGTAGTTCGGTTGAG|downstream_gene_variant|MODIFIER|exon-XM_004485643.3-1|GENE_exon-XM_004485643.3-1|transcript|rna-XM_004485643.3|protein_coding||c.*1609_*1610insCTCAACCGAACTACGTA|||||1327|,ATACGTAGTTCGGTTGAG|intergenic_region|MODIFIER|exon-XM_012713291.2-1-exon-XR_003470017.1-1|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|intergenic_region|GENE_exon-XM_012713291.2-1-GENE_exon-XR_003470017.1-1|||n.1876420_1876421insTACGTAGTTCGGTTGAG||||||;DP=82;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=32.82;QD=34.98;SOR=0.941;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1881743,".","GA","G","1/1","0/0",1495.38,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XR_003470017.1-1|GENE_exon-XR_003470017.1-1|transcript|rna-XR_003470017.1|pseudogene||n.-1387delT|||||1387|,G|upstream_gene_variant|MODIFIER|exon-XR_003470012.1-1|GENE_exon-XR_003470012.1-1|transcript|rna-XR_003470012.1|pseudogene||n.-1386delT|||||1386|,G|upstream_gene_variant|MODIFIER|exon-XR_003470015.1-1|GENE_exon-XR_003470015.1-1|transcript|rna-XR_003470015.1|pseudogene||n.-1386delT|||||1386|,G|upstream_gene_variant|MODIFIER|exon-XM_004485643.3-1|GENE_exon-XM_004485643.3-1|transcript|rna-XM_004485643.3|protein_coding||c.-1727delT|||||1386|,G|upstream_gene_variant|MODIFIER|LOC101497641|gene-LOC101497641|transcript|XM_004485646.3|protein_coding||c.-5801delA|||||2619|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XM_004485643.3|protein_coding||c.*3996delA|||||1386|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485646.3-1|GENE_exon-XM_004485646.3-1|transcript|rna-XM_004485646.3|protein_coding||c.*2936delT|||||2619|,G|downstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470017.1|pseudogene||n.*4395delA|||||1387|,G|downstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470012.1|pseudogene||n.*4395delA|||||1386|,G|downstream_gene_variant|MODIFIER|LOC101496994|gene-LOC101496994|transcript|XR_003470015.1|pseudogene||n.*4395delA|||||1386|,G|intergenic_region|MODIFIER|exon-XR_003470012.1-1-exon-XM_004485646.3-1|GENE_exon-XR_003470012.1-1-GENE_exon-XM_004485646.3-1|intergenic_region|GENE_exon-XR_003470012.1-1-GENE_exon-XM_004485646.3-1|||n.1881744delA||||||;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.31;QD=29.32;SOR=0.900;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1894477,".","T","TATAATAATAATAATAATAATAATAATAATAATAATAATAATA","1/1","0/0",198.87,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=TATAATAATAATAATAATAATAATAATAATAATAATAATAATA|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1894477_1894478insATAATAATAATAATAATAATAATAATAATAATAATAATAATA||||||;DP=44;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.96;QD=29.38;SOR=2.833;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1894665,".","T","A","1/1","0/0",813.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1894665T>A||||||;DP=73;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.81;QD=23.92;SOR=2.303;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1894845,".","C","T","1/1","0/0",1533.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1894845C>T||||||;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=25.14;SOR=0.793;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1895210,".","A","AGGGTTTTTGATGGTTATATCCCCTTTTTGTT","0/1","0/0",209.16,"mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=AGGGTTTTTGATGGTTATATCCCCTTTTTGTT|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1895210_1895211insGGGTTTTTGATGGTTATATCCCCTTTTTGTT||||||;BaseQRankSum=0.792;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.250;MQ=49.85;MQRankSum=0.566;QD=29.88;ReadPosRankSum=-1.068e+00;SOR=3.897;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1895228,".","ATAAATT","A","1/1","0/0",92.77,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-10461_-10456delTAAATT|||||4996|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-5240_-5235delTAAATT|||||4996|,A|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-5240_-5235delTAAATT|||||4996|,A|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-5240_-5235delTAAATT|||||4996|,A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-10461_-10456delTAAATT|||||4996|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-10855_-10850delTAAATT|||||4996|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1895229_1895234delTAAATT||||||;DP=44;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=52.00;QD=30.92;SOR=2.833;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1895325,".","ATG","A","1/1","0/0",181.77,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-10364_-10363delTG|||||4899|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-5143_-5142delTG|||||4899|,A|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-5143_-5142delTG|||||4899|,A|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-5143_-5142delTG|||||4899|,A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-10364_-10363delTG|||||4899|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-10758_-10757delTG|||||4899|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1895326_1895327delTG||||||;DP=44;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.86;QD=30.16;SOR=3.611;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1895328,".","A","ATT","1/1","0/0",181.77,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=ATT|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-10362_-10361insTT|||||4896|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-5141_-5140insTT|||||4896|,ATT|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-5141_-5140insTT|||||4896|,ATT|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-5141_-5140insTT|||||4896|,ATT|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-10362_-10361insTT|||||4896|WARNING_TRANSCRIPT_NO_START_CODON,ATT|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-10756_-10755insTT|||||4896|WARNING_TRANSCRIPT_NO_START_CODON,ATT|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1895328_1895329insTT||||||;DP=42;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.86;QD=30.24;SOR=3.611;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1895360,".","ATGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC","A","1/1","0/0",257.48,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-10329_-10233delTGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC|||||4864|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-5108_-5012delTGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC|||||4864|,A|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-5108_-5012delTGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC|||||4864|,A|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-5108_-5012delTGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC|||||4864|,A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-10329_-10233delTGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC|||||4864|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-10723_-10627delTGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC|||||4864|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1895361_1895457delTGTTTAAACTCGAAAAATGACAATCAATTTAACTCTGTTAATATTTTGTAACCTTTTAACTTAGAGAATATATATATATATATATATATATATTAAC||||||;DP=30;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.10;QD=34.65;SOR=2.584;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1896413,".","A","G","1/1","0/0",2628.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-9277A>G|||||3812|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-4056A>G|||||3812|,G|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-4056A>G|||||3812|,G|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-4056A>G|||||3812|,G|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-9277A>G|||||3812|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-9671A>G|||||3812|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1896413A>G||||||;DP=109;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.36;QD=25.07;SOR=0.971;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1896424,".","C","T","1/1","0/0",2642.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-9266C>T|||||3801|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-4045C>T|||||3801|,T|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-4045C>T|||||3801|,T|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-4045C>T|||||3801|,T|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-9266C>T|||||3801|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-9660C>T|||||3801|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1896424C>T||||||;DP=107;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.67;QD=28.54;SOR=0.910;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1896463,".","A","G","1/1","0/0",1623.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-9227A>G|||||3762|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-4006A>G|||||3762|,G|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-4006A>G|||||3762|,G|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-4006A>G|||||3762|,G|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-9227A>G|||||3762|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-9621A>G|||||3762|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1896463A>G||||||;DP=113;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=21.65;SOR=0.832;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1897027,".","CATTATT","C,CATTATTATTATTATTATTATTATT","1/1","2/2",1000.17,"mrd10;mrd15;mrd20;mrd30","AC=2,2;AF=0.500,0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-8662_-8657delATTATT|||||3197|WARNING_TRANSCRIPT_NO_START_CODON,CATTATTATTATTATTATTATTATT|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-8657_-8656insATTATTATTATTATTATT|||||3191|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-3441_-3436delATTATT|||||3197|,CATTATTATTATTATTATTATTATT|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-3436_-3435insATTATTATTATTATTATT|||||3191|,C|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-3441_-3436delATTATT|||||3197|,CATTATTATTATTATTATTATTATT|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-3436_-3435insATTATTATTATTATTATT|||||3191|,C|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-3441_-3436delATTATT|||||3197|,CATTATTATTATTATTATTATTATT|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-3436_-3435insATTATTATTATTATTATT|||||3191|,C|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-8662_-8657delATTATT|||||3197|WARNING_TRANSCRIPT_NO_START_CODON,CATTATTATTATTATTATTATTATT|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-8657_-8656insATTATTATTATTATTATT|||||3191|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-9056_-9051delATTATT|||||3197|WARNING_TRANSCRIPT_NO_START_CODON,CATTATTATTATTATTATTATTATT|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-9051_-9050insATTATTATTATTATTATT|||||3191|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1897028_1897033delATTATT||||||,CATTATTATTATTATTATTATTATT|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1897033_1897034insATTATTATTATTATTATT||||||;BaseQRankSum=-1.396e+00;ClippingRankSum=0.00;DP=84;ExcessHet=3.0103;FS=3.188;MLEAC=2,2;MLEAF=0.500,0.500;MQ=40.58;MQRankSum=-8.120e-01;QD=27.43;ReadPosRankSum=-1.520e+00;SOR=0.477;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1900014,".","CT","C","1/1","0/0",1011.38,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.-5675delT|||||210|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.-454delT|||||210|,C|upstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.-454delT|||||210|,C|upstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.-454delT|||||210|,C|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.-5675delT|||||210|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.-6069delT|||||210|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485646.3-1-exon-XM_004485647.3-1|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|intergenic_region|GENE_exon-XM_004485646.3-1-GENE_exon-XM_004485647.3-1|||n.1900015delT||||||;DP=86;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=22.99;SOR=0.784;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",1900901,".","T","G","1/1","0/0",1224.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.433T>G|p.Cys145Gly|677/4531|433/2472|145/823||,G|missense_variant|MODERATE|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.433T>G|p.Cys145Gly|677/4603|433/2472|145/823||,G|missense_variant|MODERATE|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.433T>G|p.Cys145Gly|677/4658|433/2472|145/823||,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=115;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=16.11;SOR=1.121;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1901179,".","A","G","1/1","0/0",1220.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|synonymous_variant|LOW|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.711A>G|p.Gly237Gly|955/4531|711/2472|237/823||,G|synonymous_variant|LOW|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.711A>G|p.Gly237Gly|955/4603|711/2472|237/823||,G|synonymous_variant|LOW|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.711A>G|p.Gly237Gly|955/4658|711/2472|237/823||,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=93;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=22.60;SOR=0.846;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1901243,".","G","A","1/1","0/0",1330.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|missense_variant|MODERATE|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.775G>A|p.Ala259Thr|1019/4531|775/2472|259/823||,A|missense_variant|MODERATE|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.775G>A|p.Ala259Thr|1019/4603|775/2472|259/823||,A|missense_variant|MODERATE|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.775G>A|p.Ala259Thr|1019/4658|775/2472|259/823||,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.19;SOR=0.804;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1901283,".","A","G","1/1","0/0",1114.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.815A>G|p.Asp272Gly|1059/4531|815/2472|272/823||,G|missense_variant|MODERATE|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.815A>G|p.Asp272Gly|1059/4603|815/2472|272/823||,G|missense_variant|MODERATE|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.815A>G|p.Asp272Gly|1059/4658|815/2472|272/823||,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=21.03;SOR=0.730;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1901506,".","T","C","1/1","0/0",1007.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|synonymous_variant|LOW|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.1038T>C|p.Gly346Gly|1282/4531|1038/2472|346/823||,C|synonymous_variant|LOW|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.1038T>C|p.Gly346Gly|1282/4603|1038/2472|346/823||,C|synonymous_variant|LOW|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.1038T>C|p.Gly346Gly|1282/4658|1038/2472|346/823||,C|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=105;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=15.04;SOR=0.784;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1901727,".","C","T","1/1","0/0",1326.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.1259C>T|p.Ala420Val|1503/4531|1259/2472|420/823||,T|missense_variant|MODERATE|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.1259C>T|p.Ala420Val|1503/4603|1259/2472|420/823||,T|missense_variant|MODERATE|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.1259C>T|p.Ala420Val|1503/4658|1259/2472|420/823||,T|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.12;SOR=0.729;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1901743,".","C","A","1/1","0/0",1240.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|synonymous_variant|LOW|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.1275C>A|p.Thr425Thr|1519/4531|1275/2472|425/823||,A|synonymous_variant|LOW|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.1275C>A|p.Thr425Thr|1519/4603|1275/2472|425/823||,A|synonymous_variant|LOW|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.1275C>A|p.Thr425Thr|1519/4658|1275/2472|425/823||,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.40;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",1902178,".","G","A","1/1","0/0",1256.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|synonymous_variant|LOW|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.1710G>A|p.Lys570Lys|1954/4531|1710/2472|570/823||,A|synonymous_variant|LOW|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.1710G>A|p.Lys570Lys|1954/4603|1710/2472|570/823||,A|synonymous_variant|LOW|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.1710G>A|p.Lys570Lys|1954/4658|1710/2472|570/823||,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.16;SOR=1.358;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1902640,".","C","T","1/1","0/0",793.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|synonymous_variant|LOW|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding|1/4|c.2172C>T|p.Asn724Asn|2416/4531|2172/2472|724/823||,T|synonymous_variant|LOW|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding|1/3|c.2172C>T|p.Asn724Asn|2416/4603|2172/2472|724/823||,T|synonymous_variant|LOW|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding|1/4|c.2172C>T|p.Asn724Asn|2416/4658|2172/2472|724/823||,T|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=71;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.04;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1906547,".","A","G","1/1","0/0",1456.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-3280A>G|||||1773|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-4561A>G|||||3265|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*6322A>G|||||857|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*3607A>G|||||857|,G|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*3607A>G|||||857|,G|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*3607A>G|||||463|,G|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*1897T>C|||||1773|,G|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*3265T>C|||||3265|,G|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*6322A>G|||||857|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*6322A>G|||||463|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1906547A>G||||||;DP=68;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.32;QD=29.03;SOR=1.911;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1907115,".","G","GA","1/1","0/0",271.48,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=GA|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-2712_-2711insA|||||1204|WARNING_TRANSCRIPT_NO_START_CODON,GA|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3993_-3992insA|||||2696|WARNING_TRANSCRIPT_NO_START_CODON,GA|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*6890_*6891insA|||||1426|WARNING_TRANSCRIPT_NO_START_CODON,GA|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*4175_*4176insA|||||1426|,GA|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*4175_*4176insA|||||1426|,GA|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*4175_*4176insA|||||1032|,GA|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*1328_*1329insT|||||1204|,GA|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*2696_*2697insT|||||2696|,GA|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*6890_*6891insA|||||1426|WARNING_TRANSCRIPT_NO_START_CODON,GA|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*6890_*6891insA|||||1032|WARNING_TRANSCRIPT_NO_START_CODON,GA|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1907115_1907116insA||||||;DP=42;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.94;QD=28.27;SOR=1.609;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1907131,".","C","A","1/1","0/0",280.52,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-2696C>A|||||1189|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3977C>A|||||2681|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*6906C>A|||||1441|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*4191C>A|||||1441|,A|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*4191C>A|||||1441|,A|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*4191C>A|||||1047|,A|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*1313G>T|||||1189|,A|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*2681G>T|||||2681|,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*6906C>A|||||1441|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*6906C>A|||||1047|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1907131C>A||||||;DP=46;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.71;QD=26.44;SOR=1.609;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1907154,".","C","T","1/1","0/0",406.43,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-2673C>T|||||1166|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3954C>T|||||2658|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*6929C>T|||||1464|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*4214C>T|||||1464|,T|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*4214C>T|||||1464|,T|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*4214C>T|||||1070|,T|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*1290G>A|||||1166|,T|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*2658G>A|||||2658|,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*6929C>T|||||1464|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*6929C>T|||||1070|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1907154C>T||||||;DP=47;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.45;QD=27.41;SOR=2.833;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1907155,".","T","TTGAC","1/1","0/0",397.39,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=TTGAC|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-2672_-2671insTGAC|||||1164|WARNING_TRANSCRIPT_NO_START_CODON,TTGAC|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3953_-3952insTGAC|||||2656|WARNING_TRANSCRIPT_NO_START_CODON,TTGAC|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*6930_*6931insTGAC|||||1466|WARNING_TRANSCRIPT_NO_START_CODON,TTGAC|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*4215_*4216insTGAC|||||1466|,TTGAC|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*4215_*4216insTGAC|||||1466|,TTGAC|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*4215_*4216insTGAC|||||1072|,TTGAC|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*1288_*1289insGTCA|||||1164|,TTGAC|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*2656_*2657insGTCA|||||2656|,TTGAC|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*6930_*6931insTGAC|||||1466|WARNING_TRANSCRIPT_NO_START_CODON,TTGAC|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*6930_*6931insTGAC|||||1072|WARNING_TRANSCRIPT_NO_START_CODON,TTGAC|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1907155_1907156insTGAC||||||;DP=47;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.45;QD=28.04;SOR=2.833;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1907185,".","T","A","1/1","0/0",460.42,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-2642T>A|||||1135|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3923T>A|||||2627|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*6960T>A|||||1495|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*4245T>A|||||1495|,A|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*4245T>A|||||1495|,A|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*4245T>A|||||1101|,A|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*1259A>T|||||1135|,A|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*2627A>T|||||2627|,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*6960T>A|||||1495|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*6960T>A|||||1101|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1907185T>A||||||;DP=50;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.11;QD=32.20;SOR=2.303;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1907187,".","G","A","1/1","0/0",460.42,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-2640G>A|||||1133|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3921G>A|||||2625|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*6962G>A|||||1497|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*4247G>A|||||1497|,A|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*4247G>A|||||1497|,A|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*4247G>A|||||1103|,A|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*1257C>T|||||1133|,A|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*2625C>T|||||2625|,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*6962G>A|||||1497|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*6962G>A|||||1103|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1907187G>A||||||;DP=51;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.66;QD=27.11;SOR=2.494;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1908061,".","TTA","T","1/1","0/0",2319.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-1765_-1764delTA|||||258|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3046_-3045delTA|||||1750|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*7837_*7838delTA|||||2372|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*5122_*5123delTA|||||2372|,T|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*5122_*5123delTA|||||2372|,T|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*5122_*5123delTA|||||1978|,T|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*381_*382delTA|||||258|,T|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*1749_*1750delTA|||||1750|,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*7837_*7838delTA|||||2372|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*7837_*7838delTA|||||1978|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1908062_1908063delTA||||||;DP=102;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=47.85;QD=31.26;SOR=0.981;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1908069,".","C","T","1/1","0/0",2355.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101509862|gene-LOC101509862|transcript|XM_027333118.1|protein_coding||c.-1758C>T|||||251|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC113787213|gene-LOC113787213|transcript|XM_027336119.1|protein_coding||c.-3039C>T|||||1743|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485647.3|protein_coding||c.*7844C>T|||||2379|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485647.3-1|GENE_exon-XM_004485647.3-1|transcript|rna-XM_004485647.3|protein_coding||c.*5129C>T|||||2379|,T|downstream_gene_variant|MODIFIER|exon-XM_012713379.2-1|GENE_exon-XM_012713379.2-1|transcript|rna-XM_012713379.2|protein_coding||c.*5129C>T|||||2379|,T|downstream_gene_variant|MODIFIER|exon-XM_004485648.3-1|GENE_exon-XM_004485648.3-1|transcript|rna-XM_004485648.3|protein_coding||c.*5129C>T|||||1985|,T|downstream_gene_variant|MODIFIER|exon-XM_027333118.1-1|GENE_exon-XM_027333118.1-1|transcript|rna-XM_027333118.1|protein_coding||c.*375G>A|||||251|,T|downstream_gene_variant|MODIFIER|exon-XM_027336119.1-1|GENE_exon-XM_027336119.1-1|transcript|rna-XM_027336119.1|protein_coding||c.*1743G>A|||||1743|,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_012713379.2|protein_coding||c.*7844C>T|||||2379|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101498197|gene-LOC101498197|transcript|XM_004485648.3|protein_coding||c.*7844C>T|||||1985|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485648.3-1-exon-XM_027333118.1-1|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|intergenic_region|GENE_exon-XM_004485648.3-1-GENE_exon-XM_027333118.1-1|||n.1908069C>T||||||;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=48.11;QD=29.64;SOR=0.931;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1923377,".","T","C","0/0","1/1",1505.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|synonymous_variant|LOW|exon-XM_004485650.3-1|GENE_exon-XM_004485650.3-1|transcript|rna-XM_004485650.3|protein_coding|6/8|c.972A>G|p.Leu324Leu|1403/2894|972/1905|324/634||,C|non_coding_transcript_variant|MODIFIER|LOC101498971|gene-LOC101498971|transcript|XM_004485650.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=120;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.28;SOR=0.826;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
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["NC_021160.1",1944303,".","CCAGCATCG","C","0/1","0/0",609.15,"MQ40","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101499913|gene-LOC101499913|transcript|XR_003471929.1|pseudogene||n.-1753_-1746delCAGCATCG|||||613|,C|upstream_gene_variant|MODIFIER|exon-XR_003471929.1-1|GENE_exon-XR_003471929.1-1|transcript|rna-XR_003471929.1|pseudogene||n.-613_-606delCAGCATCG|||||613|,C|upstream_gene_variant|MODIFIER|LOC101499608|gene-LOC101499608|transcript|XM_004485652.2|protein_coding||c.-5652_-5645delCAGCATCG|||||2627|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XR_003471930.1-1|GENE_exon-XR_003471930.1-1|transcript|rna-XR_003471930.1|pseudogene||n.-3432_-3425delCAGCATCG|||||3432|,C|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_004485651.3|protein_coding||c.*13074_*13081delCAGCATCG|||||1979|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485651.3-1|GENE_exon-XM_004485651.3-1|transcript|rna-XM_004485651.3|protein_coding||c.*2625_*2632delCAGCATCG|||||1979|,C|downstream_gene_variant|MODIFIER|exon-XM_012713176.2-1|GENE_exon-XM_012713176.2-1|transcript|rna-XM_012713176.2|protein_coding||c.*2625_*2632delCAGCATCG|||||1979|,C|downstream_gene_variant|MODIFIER|exon-XM_004485652.2-1|GENE_exon-XM_004485652.2-1|transcript|rna-XM_004485652.2|protein_coding||c.*2962_*2969delCGATGCTG|||||2627|,C|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_012713176.2|protein_coding||c.*12288_*12295delCAGCATCG|||||1979|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485651.3-1-exon-XR_003471929.1-1|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|intergenic_region|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|||n.1944304_1944311delCAGCATCG||||||;BaseQRankSum=-3.540e-01;ClippingRankSum=0.00;DP=73;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.250;MQ=36.92;MQRankSum=-2.117e+00;QD=15.62;ReadPosRankSum=-8.230e-01;SOR=1.358;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1944307,".","C","T","0/1","0/0",843.19,"MQ40","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101499913|gene-LOC101499913|transcript|XR_003471929.1|pseudogene||n.-1750C>T|||||610|,T|upstream_gene_variant|MODIFIER|exon-XR_003471929.1-1|GENE_exon-XR_003471929.1-1|transcript|rna-XR_003471929.1|pseudogene||n.-610C>T|||||610|,T|upstream_gene_variant|MODIFIER|LOC101499608|gene-LOC101499608|transcript|XM_004485652.2|protein_coding||c.-5649C>T|||||2624|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XR_003471930.1-1|GENE_exon-XR_003471930.1-1|transcript|rna-XR_003471930.1|pseudogene||n.-3429C>T|||||3429|,T|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_004485651.3|protein_coding||c.*13077C>T|||||1982|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485651.3-1|GENE_exon-XM_004485651.3-1|transcript|rna-XM_004485651.3|protein_coding||c.*2628C>T|||||1982|,T|downstream_gene_variant|MODIFIER|exon-XM_012713176.2-1|GENE_exon-XM_012713176.2-1|transcript|rna-XM_012713176.2|protein_coding||c.*2628C>T|||||1982|,T|downstream_gene_variant|MODIFIER|exon-XM_004485652.2-1|GENE_exon-XM_004485652.2-1|transcript|rna-XM_004485652.2|protein_coding||c.*2966G>A|||||2624|,T|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_012713176.2|protein_coding||c.*12291C>T|||||1982|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485651.3-1-exon-XR_003471929.1-1|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|intergenic_region|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|||n.1944307C>T||||||;BaseQRankSum=3.66;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=37.25;MQRankSum=2.18;QD=22.19;ReadPosRankSum=0.338;SOR=0.479;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1944312,".","A","C","0/1","0/0",857.19,"MQ40","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101499913|gene-LOC101499913|transcript|XR_003471929.1|pseudogene||n.-1745A>C|||||605|,C|upstream_gene_variant|MODIFIER|exon-XR_003471929.1-1|GENE_exon-XR_003471929.1-1|transcript|rna-XR_003471929.1|pseudogene||n.-605A>C|||||605|,C|upstream_gene_variant|MODIFIER|LOC101499608|gene-LOC101499608|transcript|XM_004485652.2|protein_coding||c.-5644A>C|||||2619|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XR_003471930.1-1|GENE_exon-XR_003471930.1-1|transcript|rna-XR_003471930.1|pseudogene||n.-3424A>C|||||3424|,C|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_004485651.3|protein_coding||c.*13082A>C|||||1987|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485651.3-1|GENE_exon-XM_004485651.3-1|transcript|rna-XM_004485651.3|protein_coding||c.*2633A>C|||||1987|,C|downstream_gene_variant|MODIFIER|exon-XM_012713176.2-1|GENE_exon-XM_012713176.2-1|transcript|rna-XM_012713176.2|protein_coding||c.*2633A>C|||||1987|,C|downstream_gene_variant|MODIFIER|exon-XM_004485652.2-1|GENE_exon-XM_004485652.2-1|transcript|rna-XM_004485652.2|protein_coding||c.*2961T>G|||||2619|,C|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_012713176.2|protein_coding||c.*12296A>C|||||1987|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485651.3-1-exon-XR_003471929.1-1|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|intergenic_region|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|||n.1944312A>C||||||;BaseQRankSum=-1.150e+00;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.250;MQ=37.25;MQRankSum=2.18;QD=22.56;ReadPosRankSum=0.558;SOR=0.272;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",1944314,".","ATG","A","0/1","0/0",797.15,"MQ40","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101499913|gene-LOC101499913|transcript|XR_003471929.1|pseudogene||n.-1742_-1741delTG|||||602|,A|upstream_gene_variant|MODIFIER|exon-XR_003471929.1-1|GENE_exon-XR_003471929.1-1|transcript|rna-XR_003471929.1|pseudogene||n.-602_-601delTG|||||602|,A|upstream_gene_variant|MODIFIER|LOC101499608|gene-LOC101499608|transcript|XM_004485652.2|protein_coding||c.-5641_-5640delTG|||||2616|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XR_003471930.1-1|GENE_exon-XR_003471930.1-1|transcript|rna-XR_003471930.1|pseudogene||n.-3421_-3420delTG|||||3421|,A|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_004485651.3|protein_coding||c.*13085_*13086delTG|||||1990|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485651.3-1|GENE_exon-XM_004485651.3-1|transcript|rna-XM_004485651.3|protein_coding||c.*2636_*2637delTG|||||1990|,A|downstream_gene_variant|MODIFIER|exon-XM_012713176.2-1|GENE_exon-XM_012713176.2-1|transcript|rna-XM_012713176.2|protein_coding||c.*2636_*2637delTG|||||1990|,A|downstream_gene_variant|MODIFIER|exon-XM_004485652.2-1|GENE_exon-XM_004485652.2-1|transcript|rna-XM_004485652.2|protein_coding||c.*2957_*2958delCA|||||2616|,A|downstream_gene_variant|MODIFIER|LOC101499291|gene-LOC101499291|transcript|XM_012713176.2|protein_coding||c.*12299_*12300delTG|||||1990|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485651.3-1-exon-XR_003471929.1-1|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|intergenic_region|GENE_exon-XM_004485651.3-1-GENE_exon-XR_003471929.1-1|||n.1944315_1944316delTG||||||;BaseQRankSum=-3.410e-01;ClippingRankSum=0.00;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=38.33;MQRankSum=1.38;QD=18.98;ReadPosRankSum=2.25;SOR=0.811;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",1992993,".","C","A","1/1","0/0",985.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485660.3-1|GENE_exon-XM_004485660.3-1|transcript|rna-XM_004485660.3|protein_coding||c.-3265G>T|||||2858|,A|upstream_gene_variant|MODIFIER|LOC101501521|gene-LOC101501521|transcript|XM_004485658.1|protein_coding||c.-5705C>A|||||2406|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101502160|gene-LOC101502160|transcript|XM_004485660.3|protein_coding||c.*5420C>A|||||2858|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485658.1-1|GENE_exon-XM_004485658.1-1|transcript|rna-XM_004485658.1|protein_coding||c.*2586G>T|||||2406|,A|intron_variant|MODIFIER|exon-XM_004485659.3-1|GENE_exon-XM_004485659.3-1|transcript|rna-XM_004485659.3|protein_coding|5/5|c.781+40G>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101501836|gene-LOC101501836|transcript|XM_004485659.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.64;SOR=0.793;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2022225,".","C","T","1/1","0/0",2686.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_004485666.3-1|GENE_exon-XM_004485666.3-1|transcript|rna-XM_004485666.3|protein_coding|1/1|c.35C>T|p.Thr12Ile|94/891|35/426|12/141||,T|upstream_gene_variant|MODIFIER|LOC101503765|gene-LOC101503765|transcript|XM_004485665.3|protein_coding||c.-7335C>T|||||2873|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101503428|gene-LOC101503428|transcript|XM_004485664.3|protein_coding||c.*5313C>T|||||923|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485664.3-1|GENE_exon-XM_004485664.3-1|transcript|rna-XM_004485664.3|protein_coding||c.*1027C>T|||||923|,T|downstream_gene_variant|MODIFIER|exon-XM_004485665.3-1|GENE_exon-XM_004485665.3-1|transcript|rna-XM_004485665.3|protein_coding||c.*3176G>A|||||2873|,T|non_coding_transcript_variant|MODIFIER|LOC101504093|gene-LOC101504093|transcript|XM_004485666.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=104;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.64;QD=33.57;SOR=1.234;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2023983,".","T","G","1/1","0/0",2398.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101503765|gene-LOC101503765|transcript|XM_004485665.3|protein_coding||c.-5577T>G|||||1115|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101503428|gene-LOC101503428|transcript|XM_004485664.3|protein_coding||c.*7071T>G|||||2681|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485664.3-1|GENE_exon-XM_004485664.3-1|transcript|rna-XM_004485664.3|protein_coding||c.*2785T>G|||||2681|,G|downstream_gene_variant|MODIFIER|LOC101504093|gene-LOC101504093|transcript|XM_004485666.3|protein_coding||c.*1851T>G|||||961|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485666.3-1|GENE_exon-XM_004485666.3-1|transcript|rna-XM_004485666.3|protein_coding||c.*1367T>G|||||961|,G|downstream_gene_variant|MODIFIER|exon-XM_004485665.3-1|GENE_exon-XM_004485665.3-1|transcript|rna-XM_004485665.3|protein_coding||c.*1418A>C|||||1115|,G|intergenic_region|MODIFIER|exon-XM_004485666.3-1-exon-XM_004485665.3-1|GENE_exon-XM_004485666.3-1-GENE_exon-XM_004485665.3-1|intergenic_region|GENE_exon-XM_004485666.3-1-GENE_exon-XM_004485665.3-1|||n.2023983T>G||||||;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.44;QD=31.86;SOR=0.981;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2025692,".","A","ACGC","0/1","0/0",125.82,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=ACGC|downstream_gene_variant|MODIFIER|LOC101503428|gene-LOC101503428|transcript|XM_004485664.3|protein_coding||c.*8780_*8781insCGC|||||4391|WARNING_TRANSCRIPT_NO_START_CODON,ACGC|downstream_gene_variant|MODIFIER|exon-XM_004485664.3-1|GENE_exon-XM_004485664.3-1|transcript|rna-XM_004485664.3|protein_coding||c.*4494_*4495insCGC|||||4391|,ACGC|downstream_gene_variant|MODIFIER|LOC101504093|gene-LOC101504093|transcript|XM_004485666.3|protein_coding||c.*3560_*3561insCGC|||||2671|WARNING_TRANSCRIPT_NO_START_CODON,ACGC|downstream_gene_variant|MODIFIER|exon-XM_004485666.3-1|GENE_exon-XM_004485666.3-1|transcript|rna-XM_004485666.3|protein_coding||c.*3076_*3077insCGC|||||2671|,ACGC|intron_variant|MODIFIER|exon-XM_004485665.3-1|GENE_exon-XM_004485665.3-1|transcript|rna-XM_004485665.3|protein_coding|10/11|c.721-21_721-20insGCG||||||,ACGC|non_coding_transcript_variant|MODIFIER|LOC101503765|gene-LOC101503765|transcript|XM_004485665.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=0.055;ClippingRankSum=0.00;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=8.99;ReadPosRankSum=-1.314e+00;SOR=0.307;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",2028825,".","A","T","1/1","0/0",1657.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_004485665.3-1|GENE_exon-XM_004485665.3-1|transcript|rna-XM_004485665.3|protein_coding|2/11|c.181-12T>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC101503765|gene-LOC101503765|transcript|XM_004485665.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.89;QD=25.11;SOR=1.033;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",2032300,".","A","G","1/1","0/0",190.81,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485665.3-1|GENE_exon-XM_004485665.3-1|transcript|rna-XM_004485665.3|protein_coding||c.-2905T>C|||||2740|,G|downstream_gene_variant|MODIFIER|LOC101503765|gene-LOC101503765|transcript|XM_004485665.3|protein_coding||c.*7202A>G|||||2740|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485665.3-1-exon-XM_004485669.3-1|GENE_exon-XM_004485665.3-1-GENE_exon-XM_004485669.3-1|intergenic_region|GENE_exon-XM_004485665.3-1-GENE_exon-XM_004485669.3-1|||n.2032300A>G||||||;DP=55;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=32.00;QD=28.08;SOR=3.611;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2032975,".","T","C","1/1","0/0",1704.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485665.3-1|GENE_exon-XM_004485665.3-1|transcript|rna-XM_004485665.3|protein_coding||c.-3580A>G|||||3415|,C|downstream_gene_variant|MODIFIER|LOC101503765|gene-LOC101503765|transcript|XM_004485665.3|protein_coding||c.*7877T>C|||||3415|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485665.3-1-exon-XM_004485669.3-1|GENE_exon-XM_004485665.3-1-GENE_exon-XM_004485669.3-1|intergenic_region|GENE_exon-XM_004485665.3-1-GENE_exon-XM_004485669.3-1|||n.2032975T>C||||||;DP=75;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.50;QD=35.07;SOR=1.075;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2055126,".","TTATTTAGATAATAC","T","0/1","0/0",1781.15,"PASS","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101510509|gene-LOC101510509|transcript|XM_027330225.1|protein_coding||c.-5715_-5702delTATTTAGATAATAC|||||4078|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XR_189263.3-1|GENE_exon-XR_189263.3-1|transcript|rna-XR_189263.3|pseudogene||n.*135_*148delTATTTAGATAATAC|||||135|,T|downstream_gene_variant|MODIFIER|exon-XM_027330213.1-1|GENE_exon-XM_027330213.1-1|transcript|rna-XM_027330213.1|protein_coding||c.*1124_*1137delTATTTAGATAATAC|||||214|,T|downstream_gene_variant|MODIFIER|LOC101504401|gene-LOC101504401|transcript|XM_004485668.3|protein_coding||c.*4972_*4985delTATTTAGATAATAC|||||214|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485668.3-1|GENE_exon-XM_004485668.3-1|transcript|rna-XM_004485668.3|protein_coding||c.*1124_*1137delTATTTAGATAATAC|||||214|,T|downstream_gene_variant|MODIFIER|exon-XM_027330225.1-1|GENE_exon-XM_027330225.1-1|transcript|rna-XM_027330225.1|protein_coding||c.*4554_*4567delGTATTATCTAAATA|||||4078|,T|downstream_gene_variant|MODIFIER|LOC101504943|gene-LOC101504943|transcript|XR_189263.3|pseudogene||n.*14335_*14348delTATTTAGATAATAC|||||135|,T|downstream_gene_variant|MODIFIER|LOC101504401|gene-LOC101504401|transcript|XM_027330213.1|protein_coding||c.*4973_*4986delTATTTAGATAATAC|||||214|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XR_189263.3-1-exon-XM_027330225.1-1|GENE_exon-XR_189263.3-1-GENE_exon-XM_027330225.1-1|intergenic_region|GENE_exon-XR_189263.3-1-GENE_exon-XM_027330225.1-1|||n.2055127_2055140delTATTTAGATAATAC||||||;BaseQRankSum=1.01;ClippingRankSum=0.00;DP=148;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.250;MQ=51.56;MQRankSum=-9.574e+00;QD=15.76;ReadPosRankSum=-4.920e-01;SOR=0.711;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",2056655,".","A","G","0/1","0/0",453.19,"BQB","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101510509|gene-LOC101510509|transcript|XM_027330225.1|protein_coding||c.-4187A>G|||||2550|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XR_189263.3-1|GENE_exon-XR_189263.3-1|transcript|rna-XR_189263.3|pseudogene||n.*1663A>G|||||1663|,G|downstream_gene_variant|MODIFIER|exon-XM_027330213.1-1|GENE_exon-XM_027330213.1-1|transcript|rna-XM_027330213.1|protein_coding||c.*2652A>G|||||1742|,G|downstream_gene_variant|MODIFIER|LOC101504401|gene-LOC101504401|transcript|XM_004485668.3|protein_coding||c.*6500A>G|||||1742|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485668.3-1|GENE_exon-XM_004485668.3-1|transcript|rna-XM_004485668.3|protein_coding||c.*2652A>G|||||1742|,G|downstream_gene_variant|MODIFIER|exon-XM_027330225.1-1|GENE_exon-XM_027330225.1-1|transcript|rna-XM_027330225.1|protein_coding||c.*3039T>C|||||2550|,G|downstream_gene_variant|MODIFIER|LOC101504943|gene-LOC101504943|transcript|XR_189263.3|pseudogene||n.*15863A>G|||||1663|,G|downstream_gene_variant|MODIFIER|LOC101504401|gene-LOC101504401|transcript|XM_027330213.1|protein_coding||c.*6501A>G|||||1742|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XR_189263.3-1-exon-XM_027330225.1-1|GENE_exon-XR_189263.3-1-GENE_exon-XM_027330225.1-1|intergenic_region|GENE_exon-XR_189263.3-1-GENE_exon-XM_027330225.1-1|||n.2056655A>G||||||;BaseQRankSum=-5.452e+00;ClippingRankSum=0.00;DP=81;ExcessHet=3.0103;FS=7.302;MLEAC=1;MLEAF=0.250;MQ=52.26;MQRankSum=-5.678e+00;QD=9.64;ReadPosRankSum=-1.309e+00;SOR=0.944;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2058722,".","CAG","C","0/1","0/0",1999.15,"PASS","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101510509|gene-LOC101510509|transcript|XM_027330225.1|protein_coding||c.-2119_-2118delAG|||||482|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XR_189263.3-1|GENE_exon-XR_189263.3-1|transcript|rna-XR_189263.3|pseudogene||n.*3731_*3732delAG|||||3731|,C|downstream_gene_variant|MODIFIER|exon-XM_027330213.1-1|GENE_exon-XM_027330213.1-1|transcript|rna-XM_027330213.1|protein_coding||c.*4720_*4721delAG|||||3810|,C|downstream_gene_variant|MODIFIER|LOC101504401|gene-LOC101504401|transcript|XM_004485668.3|protein_coding||c.*8568_*8569delAG|||||3810|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485668.3-1|GENE_exon-XM_004485668.3-1|transcript|rna-XM_004485668.3|protein_coding||c.*4720_*4721delAG|||||3810|,C|downstream_gene_variant|MODIFIER|exon-XM_027330225.1-1|GENE_exon-XM_027330225.1-1|transcript|rna-XM_027330225.1|protein_coding||c.*970_*971delCT|||||482|,C|downstream_gene_variant|MODIFIER|LOC101504943|gene-LOC101504943|transcript|XR_189263.3|pseudogene||n.*17931_*17932delAG|||||3731|,C|downstream_gene_variant|MODIFIER|LOC101504401|gene-LOC101504401|transcript|XM_027330213.1|protein_coding||c.*8569_*8570delAG|||||3810|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XR_189263.3-1-exon-XM_027330225.1-1|GENE_exon-XR_189263.3-1-GENE_exon-XM_027330225.1-1|intergenic_region|GENE_exon-XR_189263.3-1-GENE_exon-XM_027330225.1-1|||n.2058723_2058724delAG||||||;BaseQRankSum=-1.084e+00;ClippingRankSum=0.00;DP=158;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.250;MQ=59.48;MQRankSum=0.526;QD=17.23;ReadPosRankSum=0.221;SOR=0.657;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2074749,".","TAC","T","1/1","0/0",2251.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|frameshift_variant|HIGH|exon-XM_012712573.2-1|GENE_exon-XM_012712573.2-1|transcript|rna-XM_012712573.2|protein_coding|2/2|c.3299_3300delAC|p.Tyr1100fs|3447/4198|3299/3777|1100/1258||,T|upstream_gene_variant|MODIFIER|LOC101505362|LOC101505362|transcript|gene-LOC101505362|pseudogene||n.-4014_-4013delGT|||||4013|,T|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485670.3|protein_coding||c.-10092_-10091delAC|||||4378|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485671.3|protein_coding||c.-8987_-8986delAC|||||4378|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485674.3|protein_coding||c.-9873_-9872delAC|||||4378|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485673.3|protein_coding||c.-10181_-10180delAC|||||4378|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485671.3-1|GENE_exon-XM_004485671.3-1|transcript|rna-XM_004485671.3|protein_coding||c.*4865_*4866delGT|||||4378|,T|downstream_gene_variant|MODIFIER|exon-XM_004485674.3-1|GENE_exon-XM_004485674.3-1|transcript|rna-XM_004485674.3|protein_coding||c.*4865_*4866delGT|||||4378|,T|downstream_gene_variant|MODIFIER|exon-XM_004485670.3-1|GENE_exon-XM_004485670.3-1|transcript|rna-XM_004485670.3|protein_coding||c.*4865_*4866delGT|||||4378|,T|downstream_gene_variant|MODIFIER|exon-XM_004485673.3-1|GENE_exon-XM_004485673.3-1|transcript|rna-XM_004485673.3|protein_coding||c.*4865_*4866delGT|||||4378|,T|non_coding_transcript_variant|MODIFIER|LOC101505696|gene-LOC101505696|transcript|XM_012712573.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=170;ExcessHet=0.7918;FS=0.000;LOF=(exon-XM_012712573.2-1|GENE_exon-XM_012712573.2-1|1|1.00);MLEAC=2;MLEAF=0.500;MQ=54.15;QD=35.36;SOR=1.848;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2076370,".","T","A","1/1","0/0",101.81,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485670.3|protein_coding||c.-8472T>A|||||2758|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485671.3|protein_coding||c.-7367T>A|||||2758|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485674.3|protein_coding||c.-8253T>A|||||2758|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101506019|gene-LOC101506019|transcript|XM_004485673.3|protein_coding||c.-8561T>A|||||2758|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101505696|gene-LOC101505696|transcript|XM_012712573.2|protein_coding||c.*5067T>A|||||869|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012712573.2-1|GENE_exon-XM_012712573.2-1|transcript|rna-XM_012712573.2|protein_coding||c.*1142T>A|||||869|,A|downstream_gene_variant|MODIFIER|exon-XM_004485671.3-1|GENE_exon-XM_004485671.3-1|transcript|rna-XM_004485671.3|protein_coding||c.*3246A>T|||||2758|,A|downstream_gene_variant|MODIFIER|exon-XM_004485674.3-1|GENE_exon-XM_004485674.3-1|transcript|rna-XM_004485674.3|protein_coding||c.*3246A>T|||||2758|,A|downstream_gene_variant|MODIFIER|exon-XM_004485670.3-1|GENE_exon-XM_004485670.3-1|transcript|rna-XM_004485670.3|protein_coding||c.*3246A>T|||||2758|,A|downstream_gene_variant|MODIFIER|exon-XM_004485673.3-1|GENE_exon-XM_004485673.3-1|transcript|rna-XM_004485673.3|protein_coding||c.*3246A>T|||||2758|,A|intergenic_region|MODIFIER|exon-XM_012712573.2-1-exon-XM_004485671.3-1|GENE_exon-XM_012712573.2-1-GENE_exon-XM_004485671.3-1|intergenic_region|GENE_exon-XM_012712573.2-1-GENE_exon-XM_004485671.3-1|||n.2076370T>A||||||;DP=38;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=26.62;QD=27.14;SOR=2.303;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2216647,".","A","G","0/0","1/1",1858.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|synonymous_variant|LOW|exon-XM_004485688.3-1|GENE_exon-XM_004485688.3-1|transcript|rna-XM_004485688.3|protein_coding|5/9|c.1053A>G|p.Leu351Leu|1123/2525|1053/2244|351/747||,G|upstream_gene_variant|MODIFIER|LOC101512236|gene-LOC101512236|transcript|XM_004485691.3|protein_coding||c.-4013A>G|||||1984|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101511152|gene-LOC101511152|transcript|XM_004485687.3|protein_coding||c.*7830A>G|||||2858|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485687.3-1|GENE_exon-XM_004485687.3-1|transcript|rna-XM_004485687.3|protein_coding||c.*3197A>G|||||2858|,G|downstream_gene_variant|MODIFIER|exon-XM_004485691.3-1|GENE_exon-XM_004485691.3-1|transcript|rna-XM_004485691.3|protein_coding||c.*2111T>C|||||1984|,G|non_coding_transcript_variant|MODIFIER|LOC101511464|gene-LOC101511464|transcript|XM_004485688.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.47;QD=34.39;SOR=0.976;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2223288,".","G","A","0/0","1/1",383.42,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485691.3-1|GENE_exon-XM_004485691.3-1|transcript|rna-XM_004485691.3|protein_coding||c.-2725C>T|||||2628|,A|downstream_gene_variant|MODIFIER|LOC101511464|gene-LOC101511464|transcript|XM_004485688.3|protein_coding||c.*8426G>A|||||4657|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485688.3-1|GENE_exon-XM_004485688.3-1|transcript|rna-XM_004485688.3|protein_coding||c.*4868G>A|||||4657|,A|downstream_gene_variant|MODIFIER|LOC101512236|gene-LOC101512236|transcript|XM_004485691.3|protein_coding||c.*4657G>A|||||2628|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485691.3-1-exon-XR_003471392.1-1|GENE_exon-XM_004485691.3-1-GENE_exon-XR_003471392.1-1|intergenic_region|GENE_exon-XM_004485691.3-1-GENE_exon-XR_003471392.1-1|||n.2223288G>A||||||;DP=54;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.27;QD=23.96;SOR=0.941;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2254887,".","T","TG","0/0","1/1",2374.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TG|upstream_gene_variant|MODIFIER|exon-XM_004485694.3-1|GENE_exon-XM_004485694.3-1|transcript|rna-XM_004485694.3|protein_coding||c.-1118_-1117insC|||||958|,TG|downstream_gene_variant|MODIFIER|LOC101513299|gene-LOC101513299|transcript|XM_004485694.3|protein_coding||c.*4760_*4761insG|||||958|WARNING_TRANSCRIPT_NO_START_CODON,TG|intergenic_region|MODIFIER|exon-XM_004485694.3-1-exon-XM_004485695.3-1|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|intergenic_region|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|||n.2254887_2254888insG||||||;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.20;QD=35.14;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2255486,".","A","G","0/0","1/1",195.62,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485694.3-1|GENE_exon-XM_004485694.3-1|transcript|rna-XM_004485694.3|protein_coding||c.-1716T>C|||||1556|,G|downstream_gene_variant|MODIFIER|LOC101513299|gene-LOC101513299|transcript|XM_004485694.3|protein_coding||c.*5359A>G|||||1556|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485694.3-1-exon-XM_004485695.3-1|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|intergenic_region|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|||n.2255486A>G||||||;DP=46;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=32.60;SOR=0.693;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2257197,".","C","T","0/0","1/1",1345.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004485694.3-1|GENE_exon-XM_004485694.3-1|transcript|rna-XM_004485694.3|protein_coding||c.-3427G>A|||||3267|,T|upstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_004485695.3|protein_coding||c.-6516C>T|||||4612|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_027333982.1|protein_coding||c.-6516C>T|||||4612|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101513299|gene-LOC101513299|transcript|XM_004485694.3|protein_coding||c.*7070C>T|||||3267|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485695.3-1|GENE_exon-XM_004485695.3-1|transcript|rna-XM_004485695.3|protein_coding||c.*4770G>A|||||4612|,T|downstream_gene_variant|MODIFIER|exon-XM_027333982.1-1|GENE_exon-XM_027333982.1-1|transcript|rna-XM_027333982.1|protein_coding||c.*4770G>A|||||4612|,T|intergenic_region|MODIFIER|exon-XM_004485694.3-1-exon-XM_004485695.3-1|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|intergenic_region|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|||n.2257197C>T||||||;DP=75;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=46.34;QD=34.03;SOR=1.675;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2260396,".","T","C","0/0","1/1",24.82,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_004485695.3|protein_coding||c.-3317T>C|||||1413|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_027333982.1|protein_coding||c.-3317T>C|||||1413|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485695.3-1|GENE_exon-XM_004485695.3-1|transcript|rna-XM_004485695.3|protein_coding||c.*1571A>G|||||1413|,C|downstream_gene_variant|MODIFIER|exon-XM_027333982.1-1|GENE_exon-XM_027333982.1-1|transcript|rna-XM_027333982.1|protein_coding||c.*1571A>G|||||1413|,C|intergenic_region|MODIFIER|exon-XM_004485694.3-1-exon-XM_004485695.3-1|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|intergenic_region|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|||n.2260396T>C||||||;DP=41;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.34;QD=8.27;SOR=1.179;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",2261341,".","G","A","0/0","1/1",2690.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_004485695.3|protein_coding||c.-2372G>A|||||468|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_027333982.1|protein_coding||c.-2372G>A|||||468|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485695.3-1|GENE_exon-XM_004485695.3-1|transcript|rna-XM_004485695.3|protein_coding||c.*626C>T|||||468|,A|downstream_gene_variant|MODIFIER|exon-XM_027333982.1-1|GENE_exon-XM_027333982.1-1|transcript|rna-XM_027333982.1|protein_coding||c.*626C>T|||||468|,A|intergenic_region|MODIFIER|exon-XM_004485694.3-1-exon-XM_004485695.3-1|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|intergenic_region|GENE_exon-XM_004485694.3-1-GENE_exon-XM_004485695.3-1|||n.2261341G>A||||||;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.38;QD=29.87;SOR=1.071;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2264026,".","CATAT","C","0/0","1/1",1261.38,"mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485695.3-1|GENE_exon-XM_004485695.3-1|transcript|rna-XM_004485695.3|protein_coding||c.-613_-610delATAT|||||314|,C|upstream_gene_variant|MODIFIER|exon-XM_027333982.1-1|GENE_exon-XM_027333982.1-1|transcript|rna-XM_027333982.1|protein_coding||c.-613_-610delATAT|||||314|,C|upstream_gene_variant|MODIFIER|exon-XM_012713572.2-1|GENE_exon-XM_012713572.2-1|transcript|rna-XM_012713572.2|protein_coding||c.-2613_-2610delATAT|||||2538|,C|upstream_gene_variant|MODIFIER|exon-XM_012713575.2-1|GENE_exon-XM_012713575.2-1|transcript|rna-XM_012713575.2|protein_coding||c.-2613_-2610delATAT|||||2538|,C|upstream_gene_variant|MODIFIER|LOC101513951|gene-LOC101513951|transcript|XM_004485696.3|protein_coding||c.-5945_-5942delATAT|||||3650|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485696.3-1|GENE_exon-XM_004485696.3-1|transcript|rna-XM_004485696.3|protein_coding||c.-3724_-3721delATAT|||||3650|,C|upstream_gene_variant|MODIFIER|LOC101513951|gene-LOC101513951|transcript|XM_012713572.2|protein_coding||c.-5945_-5942delATAT|||||2538|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101513951|gene-LOC101513951|transcript|XM_012713575.2|protein_coding||c.-5945_-5942delATAT|||||2538|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_004485695.3|protein_coding||c.*2218_*2221delATAT|||||314|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101513623|gene-LOC101513623|transcript|XM_027333982.1|protein_coding||c.*2218_*2221delATAT|||||314|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004485695.3-1-exon-XM_012713572.2-1|GENE_exon-XM_004485695.3-1-GENE_exon-XM_012713572.2-1|intergenic_region|GENE_exon-XM_004485695.3-1-GENE_exon-XM_012713572.2-1|||n.2264027_2264030delATAT||||||;DP=68;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=41.30;QD=33.40;SOR=1.179;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2289209,".","T","TTA","0/0","1/1",2100.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TTA|downstream_gene_variant|MODIFIER|LOC101514818|gene-LOC101514818|transcript|XM_004485699.3|protein_coding||c.*6782_*6783insTA|||||4412|WARNING_TRANSCRIPT_NO_START_CODON,TTA|downstream_gene_variant|MODIFIER|exon-XM_004485699.3-1|GENE_exon-XM_004485699.3-1|transcript|rna-XM_004485699.3|protein_coding||c.*4561_*4562insTA|||||4412|,TTA|intron_variant|MODIFIER|exon-XM_012712973.2-1|GENE_exon-XM_012712973.2-1|transcript|rna-XM_012712973.2|protein_coding|10/13|c.1928-280_1928-279insTA||||||,TTA|intron_variant|MODIFIER|exon-XM_027330275.1-1|GENE_exon-XM_027330275.1-1|transcript|rna-XM_027330275.1|protein_coding|8/11|c.1868-280_1868-279insTA||||||,TTA|intron_variant|MODIFIER|exon-XM_004485701.3-1|GENE_exon-XM_004485701.3-1|transcript|rna-XM_004485701.3|protein_coding|12/15|c.1928-280_1928-279insTA||||||,TTA|intron_variant|MODIFIER|exon-XM_012712974.2-1|GENE_exon-XM_012712974.2-1|transcript|rna-XM_012712974.2|protein_coding|10/13|c.1868-280_1868-279insTA||||||,TTA|intron_variant|MODIFIER|exon-XM_027330271.1-1|GENE_exon-XM_027330271.1-1|transcript|rna-XM_027330271.1|protein_coding|9/12|c.2222-280_2222-279insTA||||||,TTA|intron_variant|MODIFIER|exon-XM_004485700.3-1|GENE_exon-XM_004485700.3-1|transcript|rna-XM_004485700.3|protein_coding|12/15|c.2528-280_2528-279insTA||||||,TTA|non_coding_transcript_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_004485700.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,TTA|non_coding_transcript_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_012712973.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,TTA|non_coding_transcript_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_027330275.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,TTA|non_coding_transcript_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_004485701.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,TTA|non_coding_transcript_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_012712974.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,TTA|non_coding_transcript_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_027330271.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.37;QD=28.66;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2301787,".","T","C","0/0","1/1",505.42,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_012712973.2-1|GENE_exon-XM_012712973.2-1|transcript|rna-XM_012712973.2|protein_coding||c.-5706A>G|||||4099|,C|upstream_gene_variant|MODIFIER|exon-XM_027330275.1-1|GENE_exon-XM_027330275.1-1|transcript|rna-XM_027330275.1|protein_coding||c.-5128A>G|||||4099|,C|upstream_gene_variant|MODIFIER|exon-XM_004485701.3-1|GENE_exon-XM_004485701.3-1|transcript|rna-XM_004485701.3|protein_coding||c.-5706A>G|||||3198|,C|upstream_gene_variant|MODIFIER|exon-XM_012712974.2-1|GENE_exon-XM_012712974.2-1|transcript|rna-XM_012712974.2|protein_coding||c.-5128A>G|||||3110|,C|upstream_gene_variant|MODIFIER|exon-XM_027330271.1-1|GENE_exon-XM_027330271.1-1|transcript|rna-XM_027330271.1|protein_coding||c.-3082A>G|||||2877|,C|upstream_gene_variant|MODIFIER|exon-XM_004485700.3-1|GENE_exon-XM_004485700.3-1|transcript|rna-XM_004485700.3|protein_coding||c.-3082A>G|||||2876|,C|downstream_gene_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_004485700.3|protein_coding||c.*16195T>C|||||2876|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_012712973.2|protein_coding||c.*16195T>C|||||4099|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_027330275.1|protein_coding||c.*16195T>C|||||4099|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_004485701.3|protein_coding||c.*16195T>C|||||3198|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_012712974.2|protein_coding||c.*16195T>C|||||3110|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101515142|gene-LOC101515142|transcript|XM_027330271.1|protein_coding||c.*16195T>C|||||2877|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|exon-XM_004485703.3-1|GENE_exon-XM_004485703.3-1|transcript|rna-XM_004485703.3|protein_coding|5/6|c.1338+74A>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101488340|gene-LOC101488340|transcript|XM_004485703.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=50;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.15;QD=26.57;SOR=1.445;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2320422,".","ATAAGCTACAACG","A","0/0","1/1",2505.38,"MQ40","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485707.2-1|GENE_exon-XM_004485707.2-1|transcript|rna-XM_004485707.2|protein_coding||c.-4580_-4569delCGTTGTAGCTTA|||||4430|,A|upstream_gene_variant|MODIFIER|LOC101489772|gene-LOC101489772|transcript|XM_004485708.3|protein_coding||c.-3551_-3540delTAAGCTACAACG|||||35|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485708.3-1|GENE_exon-XM_004485708.3-1|transcript|rna-XM_004485708.3|protein_coding||c.-108_-97delTAAGCTACAACG|||||35|,A|downstream_gene_variant|MODIFIER|LOC101489450|gene-LOC101489450|transcript|XM_004485707.2|protein_coding||c.*8241_*8252delTAAGCTACAACG|||||4430|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485707.2-1-exon-XM_004485708.3-1|GENE_exon-XM_004485707.2-1-GENE_exon-XM_004485708.3-1|intergenic_region|GENE_exon-XM_004485707.2-1-GENE_exon-XM_004485708.3-1|||n.2320423_2320434delTAAGCTACAACG||||||;DP=88;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=36.63;QD=28.33;SOR=0.729;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2326137,".","T","C","0/0","1/1",1540.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101490091|gene-LOC101490091|transcript|XM_004485709.3|protein_coding||c.-2870T>C|||||1170|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485709.3-1|GENE_exon-XM_004485709.3-1|transcript|rna-XM_004485709.3|protein_coding||c.-1315T>C|||||1170|,C|downstream_gene_variant|MODIFIER|LOC101489772|gene-LOC101489772|transcript|XM_004485708.3|protein_coding||c.*5679T>C|||||2163|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485708.3-1|GENE_exon-XM_004485708.3-1|transcript|rna-XM_004485708.3|protein_coding||c.*2317T>C|||||2163|,C|downstream_gene_variant|MODIFIER|LOC101490417|LOC101490417|transcript|gene-LOC101490417|pseudogene||n.*4048A>G|||||4048|,C|intergenic_region|MODIFIER|exon-XM_004485708.3-1-exon-XM_004485709.3-1|GENE_exon-XM_004485708.3-1-GENE_exon-XM_004485709.3-1|intergenic_region|GENE_exon-XM_004485708.3-1-GENE_exon-XM_004485709.3-1|||n.2326137T>C||||||;DP=68;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.86;QD=34.10;SOR=1.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2329019,".","C","CT","0/0","1/1",1199.38,"PASS","AC=2;AF=0.500;AN=4;ANN=CT|upstream_gene_variant|MODIFIER|LOC101490740|gene-LOC101490740|transcript|XM_004485710.3|protein_coding||c.-12321_-12320insT|||||4862|WARNING_TRANSCRIPT_NO_START_CODON,CT|upstream_gene_variant|MODIFIER|exon-XM_004485710.3-1|GENE_exon-XM_004485710.3-1|transcript|rna-XM_004485710.3|protein_coding||c.-5124_-5123insT|||||4862|,CT|downstream_gene_variant|MODIFIER|LOC101490091|gene-LOC101490091|transcript|XM_004485709.3|protein_coding||c.*1712_*1713insT|||||13|WARNING_TRANSCRIPT_NO_START_CODON,CT|downstream_gene_variant|MODIFIER|exon-XM_004485709.3-1|GENE_exon-XM_004485709.3-1|transcript|rna-XM_004485709.3|protein_coding||c.*263_*264insT|||||13|,CT|downstream_gene_variant|MODIFIER|LOC101490417|LOC101490417|transcript|gene-LOC101490417|pseudogene||n.*1165_*1166insA|||||1165|,CT|intergenic_region|MODIFIER|exon-XM_004485709.3-1-LOC101490417|GENE_exon-XM_004485709.3-1-LOC101490417|intergenic_region|GENE_exon-XM_004485709.3-1-LOC101490417|||n.2329019_2329020insT||||||;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.83;QD=25.52;SOR=0.919;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",2333550,".","TATAATCAAGTAAATTTTTCAAATGAAAAATTTATTTGACTGAAA","T","0/0","1/1",778.38,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101490417|LOC101490417|transcript|gene-LOC101490417|pseudogene||n.-460_-417delTTTCAGTCAAATAAATTTTTCATTTGAAAAATTTACTTGATTAT|||||417|,T|upstream_gene_variant|MODIFIER|LOC101490740|gene-LOC101490740|transcript|XM_004485710.3|protein_coding||c.-7789_-7746delATAATCAAGTAAATTTTTCAAATGAAAAATTTATTTGACTGAAA|||||331|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004485710.3-1|GENE_exon-XM_004485710.3-1|transcript|rna-XM_004485710.3|protein_coding||c.-592_-549delATAATCAAGTAAATTTTTCAAATGAAAAATTTATTTGACTGAAA|||||331|,T|downstream_gene_variant|MODIFIER|LOC101490091|gene-LOC101490091|transcript|XM_004485709.3|protein_coding||c.*6244_*6287delATAATCAAGTAAATTTTTCAAATGAAAAATTTATTTGACTGAAA|||||4544|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485709.3-1|GENE_exon-XM_004485709.3-1|transcript|rna-XM_004485709.3|protein_coding||c.*4795_*4838delATAATCAAGTAAATTTTTCAAATGAAAAATTTATTTGACTGAAA|||||4544|,T|intergenic_region|MODIFIER|LOC101490417-exon-XM_004485710.3-1|LOC101490417-GENE_exon-XM_004485710.3-1|intergenic_region|LOC101490417-GENE_exon-XM_004485710.3-1|||n.2333551_2333594delATAATCAAGTAAATTTTTCAAATGAAAAATTTATTTGACTGAAA||||||;DP=60;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.26;QD=23.82;SOR=1.493;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2344578,".","A","G","0/0","1/1",1315.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101491064|gene-LOC101491064|transcript|XM_004485711.3|protein_coding||c.-3657A>G|||||1044|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485711.3-1|GENE_exon-XM_004485711.3-1|transcript|rna-XM_004485711.3|protein_coding||c.-1547A>G|||||1044|,G|upstream_gene_variant|MODIFIER|exon-XM_027331476.1-1|GENE_exon-XM_027331476.1-1|transcript|rna-XM_027331476.1|protein_coding||c.-1547A>G|||||1044|,G|upstream_gene_variant|MODIFIER|LOC101491064|gene-LOC101491064|transcript|XM_027331476.1|protein_coding||c.-6272A>G|||||1044|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101490740|gene-LOC101490740|transcript|XM_004485710.3|protein_coding||c.*10696A>G|||||3238|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485710.3-1|GENE_exon-XM_004485710.3-1|transcript|rna-XM_004485710.3|protein_coding||c.*3391A>G|||||3238|,G|intergenic_region|MODIFIER|exon-XM_004485710.3-1-exon-XM_004485711.3-1|GENE_exon-XM_004485710.3-1-GENE_exon-XM_004485711.3-1|intergenic_region|GENE_exon-XM_004485710.3-1-GENE_exon-XM_004485711.3-1|||n.2344578A>G||||||;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.59;QD=24.36;SOR=0.767;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",2348672,".","T","C","0/0","1/1",370.44,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101491377|gene-LOC101491377|transcript|XM_004485712.3|protein_coding||c.-9117T>C|||||3968|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485712.3-1|GENE_exon-XM_004485712.3-1|transcript|rna-XM_004485712.3|protein_coding||c.-4974T>C|||||3968|,C|upstream_gene_variant|MODIFIER|exon-XM_004485713.3-1|GENE_exon-XM_004485713.3-1|transcript|rna-XM_004485713.3|protein_coding||c.-4974T>C|||||4097|,C|upstream_gene_variant|MODIFIER|LOC101491377|gene-LOC101491377|transcript|XM_004485713.3|protein_coding||c.-9117T>C|||||4097|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101491064|gene-LOC101491064|transcript|XM_004485711.3|protein_coding||c.*3050T>C|||||437|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485711.3-1|GENE_exon-XM_004485711.3-1|transcript|rna-XM_004485711.3|protein_coding||c.*1705T>C|||||437|,C|intron_variant|MODIFIER|exon-XM_027331476.1-1|GENE_exon-XM_027331476.1-1|transcript|rna-XM_027331476.1|protein_coding|1/1|c.*104+1601T>C||||||,C|non_coding_transcript_variant|MODIFIER|LOC101491064|gene-LOC101491064|transcript|XM_027331476.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=44;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=48.19;QD=29.25;SOR=1.609;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2382572,".","A","G","0/0","1/1",1203.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485720.3-1|GENE_exon-XM_004485720.3-1|transcript|rna-XM_004485720.3|protein_coding||c.-4498T>C|||||3269|,G|upstream_gene_variant|MODIFIER|exon-XM_004485721.3-1|GENE_exon-XM_004485721.3-1|transcript|rna-XM_004485721.3|protein_coding||c.-4498T>C|||||3116|,G|upstream_gene_variant|MODIFIER|LOC101494396|gene-LOC101494396|transcript|XM_004485722.3|protein_coding||c.-11193A>G|||||4601|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485722.3-1|GENE_exon-XM_004485722.3-1|transcript|rna-XM_004485722.3|protein_coding||c.-5192A>G|||||4601|,G|upstream_gene_variant|MODIFIER|exon-XR_189267.3-1|GENE_exon-XR_189267.3-1|transcript|rna-XR_189267.3|pseudogene||n.-4601A>G|||||4601|,G|upstream_gene_variant|MODIFIER|exon-XR_189268.3-1|GENE_exon-XR_189268.3-1|transcript|rna-XR_189268.3|pseudogene||n.-4601A>G|||||4601|,G|upstream_gene_variant|MODIFIER|LOC101494396|gene-LOC101494396|transcript|XR_189267.3|pseudogene||n.-12420A>G|||||4601|,G|upstream_gene_variant|MODIFIER|LOC101494396|gene-LOC101494396|transcript|XR_189268.3|pseudogene||n.-12420A>G|||||4601|,G|downstream_gene_variant|MODIFIER|LOC101493874|gene-LOC101493874|transcript|XM_004485720.3|protein_coding||c.*5327A>G|||||3269|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101493874|gene-LOC101493874|transcript|XM_004485721.3|protein_coding||c.*5327A>G|||||3116|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485721.3-1-exon-XM_004485722.3-1|GENE_exon-XM_004485721.3-1-GENE_exon-XM_004485722.3-1|intergenic_region|GENE_exon-XM_004485721.3-1-GENE_exon-XM_004485722.3-1|||n.2382572A>G||||||;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.37;QD=22.71;SOR=1.077;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2439775,".","A","C","0/0","1/1",2624.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101496684|gene-LOC101496684|transcript|XM_012713031.2|protein_coding||c.-3537A>C|||||282|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_012713031.2-1|GENE_exon-XM_012713031.2-1|transcript|rna-XM_012713031.2|protein_coding||c.-438A>C|||||282|,C|intergenic_region|MODIFIER|LOC101495908-exon-XM_012713031.2-1|gene-LOC101495908-GENE_exon-XM_012713031.2-1|intergenic_region|gene-LOC101495908-GENE_exon-XM_012713031.2-1|||n.2439775A>C||||||;DP=101;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.89;QD=25.93;SOR=1.057;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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-1|GENE_exon-XR_001143937.2-1|transcript|rna-XR_001143937.2|pseudogene||n.*1364_*1371delCCAAATAC|||||1371|,A|downstream_gene_variant|MODIFIER|exon-XM_012715919.2-1|GENE_exon-XM_012715919.2-1|transcript|rna-XM_012715919.2|protein_coding||c.*2683_*2690delCCAAATAC|||||2397|,A|intergenic_region|MODIFIER|exon-XM_004485757.3-1-exon-XM_004485768.3-1|GENE_exon-XM_004485757.3-1-GENE_exon-XM_004485768.3-1|intergenic_region|GENE_exon-XM_004485757.3-1-GENE_exon-XM_004485768.3-1|||n.2686911_2686918delGTATTTGG||||||;DP=69;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=35.18;QD=28.64;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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_012715919.2|protein_coding||c.*1777A>G|||||407|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004485768.3-1-exon-XM_012718158.2-1|GENE_exon-XM_004485768.3-1-GENE_exon-XM_012718158.2-1|intergenic_region|GENE_exon-XM_004485768.3-1-GENE_exon-XM_012718158.2-1|||n.2691085A>G||||||;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=48.97;QD=23.95;SOR=0.859;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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C101511791|gene-LOC101511791|transcript|XM_012718142.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME,CT|non_coding_transcript_variant|MODIFIER|LOC101511791|gene-LOC101511791|transcript|XM_012718158.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.98;QD=33.70;SOR=0.871;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2701603,".","T","C","0/0","1/1",2507.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_012718142.2-1|GENE_exon-XM_012718142.2-1|transcript|rna-XM_012718142.2|protein_coding||c.-4726A>G|||||4594|,C|upstream_gene_variant|MODIFIER|LOC101508259|gene-LOC101508259|transcript|XM_004485772.3|protein_coding||c.-1231T>C|||||86|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101508580|gene-LOC101508580|transcript|XM_004485773.3|protein_coding||c.-5423T>C|||||4882|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101511791|gene-LOC101511791|transcript|XM_012718142.2|protein_coding||c.*8704T>C|||||4594|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485772.3-1|GENE_exon-XM_004485772.3-1|transcript|rna-XM_004485772.3|protein_coding||c.*403A>G|||||86|,C|downstream_gene_variant|MODIFIER|exon-XM_004485773.3-1|GENE_exon-XM_004485773.3-1|transcript|rna-XM_004485773.3|protein_coding||c.*4908A>G|||||4882|,C|intergenic_region|MODIFIER|exon-XM_012718142.2-1-exon-XM_004485772.3-1|GENE_exon-XM_012718142.2-1-GENE_exon-XM_004485772.3-1|intergenic_region|GENE_exon-XM_012718142.2-1-GENE_exon-XM_004485772.3-1|||n.2701603T>C||||||;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=29.24;SOR=0.765;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2704073,".","G","A","0/0","1/1",2131.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485772.3-1|GENE_exon-XM_004485772.3-1|transcript|rna-XM_004485772.3|protein_coding||c.-1285C>T|||||1239|,A|upstream_gene_variant|MODIFIER|LOC101508580|gene-LOC101508580|transcript|XM_004485773.3|protein_coding||c.-2953G>A|||||2412|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101508896|gene-LOC101508896|transcript|XM_004485774.3|protein_coding||c.-8399G>A|||||4057|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101508259|gene-LOC101508259|transcript|XM_004485772.3|protein_coding||c.*2384G>A|||||1239|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485773.3-1|GENE_exon-XM_004485773.3-1|transcript|rna-XM_004485773.3|protein_coding||c.*2438C>T|||||2412|,A|downstream_gene_variant|MODIFIER|exon-XM_004485774.3-1|GENE_exon-XM_004485774.3-1|transcript|rna-XM_004485774.3|protein_coding||c.*4369C>T|||||4057|,A|intergenic_region|MODIFIER|exon-XM_004485772.3-1-exon-XM_004485773.3-1|GENE_exon-XM_004485772.3-1-GENE_exon-XM_004485773.3-1|intergenic_region|GENE_exon-XM_004485772.3-1-GENE_exon-XM_004485773.3-1|||n.2704073G>A||||||;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.10;QD=35.40;SOR=0.823;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2727220,".","G","GA","0/0","1/1",1621.38,"PASS","AC=2;AF=0.500;AN=4;ANN=GA|upstream_gene_variant|MODIFIER|exon-XM_027330347.1-1|GENE_exon-XM_027330347.1-1|transcript|rna-XM_027330347.1|protein_coding||c.-3096_-3095insT|||||2436|,GA|upstream_gene_variant|MODIFIER|exon-XM_004485775.3-1|GENE_exon-XM_004485775.3-1|transcript|rna-XM_004485775.3|protein_coding||c.-2191_-2190insT|||||1906|,GA|upstream_gene_variant|MODIFIER|exon-XM_027330345.1-1|GENE_exon-XM_027330345.1-1|transcript|rna-XM_027330345.1|protein_coding||c.-2191_-2190insT|||||1905|,GA|upstream_gene_variant|MODIFIER|exon-XR_003470199.1-1|GENE_exon-XR_003470199.1-1|transcript|rna-XR_003470199.1|pseudogene||n.-1903_-1902insT|||||1903|,GA|upstream_gene_variant|MODIFIER|exon-XR_003470200.1-1|GENE_exon-XR_003470200.1-1|transcript|rna-XR_003470200.1|pseudogene||n.-1902_-1901insT|||||1902|,GA|upstream_gene_variant|MODIFIER|LOC101509537|gene-LOC101509537|transcript|XM_004485776.3|protein_coding||c.-4348_-4347insA|||||1688|WARNING_TRANSCRIPT_NO_START_CODON,GA|upstream_gene_variant|MODIFIER|exon-XM_004485776.3-1|GENE_exon-XM_004485776.3-1|transcript|rna-XM_004485776.3|protein_coding||c.-1844_-1843insA|||||1688|,GA|upstream_gene_variant|MODIFIER|LOC101509860|gene-LOC101509860|transcript|XM_004485777.3|protein_coding||c.-7758_-7757insA|||||4943|WARNING_TRANSCRIPT_NO_START_CODON,GA|upstream_gene_variant|MODIFIER|exon-XM_004485777.3-1|GENE_exon-XM_004485777.3-1|transcript|rna-XM_004485777.3|protein_coding||c.-5065_-5064insA|||||4943|,GA|downstream_gene_variant|MODIFIER|LOC101509211|gene-LOC101509211|transcript|XM_004485775.3|protein_coding||c.*14022_*14023insA|||||1906|WARNING_TRANSCRIPT_NO_START_CODON,GA|downstream_gene_variant|MODIFIER|LOC101509211|gene-LOC101509211|transcript|XM_027330347.1|protein_coding||c.*14022_*14023insA|||||2436|WARNING_TRANSCRIPT_NO_START_CODON,GA|downstream_gene_variant|MODIFIER|LOC101509211|gene-LOC101509211|transcript|XM_027330345.1|protein_coding||c.*14022_*14023insA|||||1905|WARNING_TRANSCRIPT_NO_START_CODON,GA|downstream_gene_variant|MODIFIER|LOC101509211|gene-LOC101509211|transcript|XR_003470199.1|pseudogene||n.*12936_*12937insA|||||1903|,GA|downstream_gene_variant|MODIFIER|LOC101509211|gene-LOC101509211|transcript|XR_003470200.1|pseudogene||n.*12936_*12937insA|||||1902|,GA|intergenic_region|MODIFIER|LOC101509211-exon-XM_004485776.3-1|gene-LOC101509211-GENE_exon-XM_004485776.3-1|intergenic_region|gene-LOC101509211-GENE_exon-XM_004485776.3-1|||n.2727220_2727221insA||||||;DP=102;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.56;QD=26.58;SOR=0.865;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",2747430,".","T","C","0/0","1/1",829.42,"map","AC=2;AF=0.500;AN=4;ANN=C|3_prime_UTR_variant|MODIFIER|exon-XM_004485780.3-1|GENE_exon-XM_004485780.3-1|transcript|rna-XM_004485780.3|protein_coding|2/2|c.*177T>C|||||177|,C|upstream_gene_variant|MODIFIER|exon-XM_004485778.3-1|GENE_exon-XM_004485778.3-1|transcript|rna-XM_004485778.3|protein_coding||c.-3278A>G|||||3278|,C|upstream_gene_variant|MODIFIER|LOC101511056|gene-LOC101511056|transcript|XM_012713795.2|protein_coding||c.-2009T>C|||||1115|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101510178|gene-LOC101510178|transcript|XM_004485778.3|protein_coding||c.*12103T>C|||||3278|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_012713795.2-1|GENE_exon-XM_012713795.2-1|transcript|rna-XM_012713795.2|protein_coding||c.*1210A>G|||||1115|,C|non_coding_transcript_variant|MODIFIER|LOC101510733|gene-LOC101510733|transcript|XM_004485780.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=73;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.35;QD=23.70;SOR=1.675;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",2754941,".","AC","A","0/0","0/1",27.16,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|frameshift_variant|HIGH|exon-XM_027330360.1-1|GENE_exon-XM_027330360.1-1|transcript|rna-XM_027330360.1|protein_coding|1/2|c.3891delG|p.Lys1297fs|4110/4405|3891/3990|1297/1329||,A|non_coding_transcript_variant|MODIFIER|LOC101511364|gene-LOC101511364|transcript|XM_027330360.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=2.10;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.250;MQ=31.94;MQRankSum=-6.190e-01;QD=3.39;ReadPosRankSum=0.921;SOR=2.303;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2755823,".","T","C","0/0","0/1",1744.19,"BQB","AC=1;AF=0.250;AN=4;ANN=C|missense_variant|MODERATE|exon-XM_027330360.1-1|GENE_exon-XM_027330360.1-1|transcript|rna-XM_027330360.1|protein_coding|1/2|c.3010A>G|p.Ile1004Val|3229/4405|3010/3990|1004/1329||,C|non_coding_transcript_variant|MODIFIER|LOC101511364|gene-LOC101511364|transcript|XM_027330360.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-5.471e+00;ClippingRankSum=0.00;DP=128;ExcessHet=3.0103;FS=4.006;MLEAC=1;MLEAF=0.250;MQ=47.79;MQRankSum=3.50;QD=19.60;ReadPosRankSum=-9.040e-01;SOR=0.395;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",2759352,".","A","T","0/0","1/1",190.81,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027330360.1-1|GENE_exon-XM_027330360.1-1|transcript|rna-XM_027330360.1|protein_coding||c.-520T>A|||||301|,T|downstream_gene_variant|MODIFIER|LOC101511364|gene-LOC101511364|transcript|XM_027330360.1|protein_coding||c.*5237A>T|||||301|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027330360.1-1-exon-XM_004485782.3-1|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|intergenic_region|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|||n.2759352A>T||||||;DP=39;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.04;QD=27.22;SOR=3.611;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2762038,".","C","T","0/0","1/1",1091.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027330360.1-1|GENE_exon-XM_027330360.1-1|transcript|rna-XM_027330360.1|protein_coding||c.-3206G>A|||||2987|,T|downstream_gene_variant|MODIFIER|LOC101511364|gene-LOC101511364|transcript|XM_027330360.1|protein_coding||c.*7923C>T|||||2987|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027330360.1-1-exon-XM_004485782.3-1|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|intergenic_region|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|||n.2762038C>T||||||;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=46.52;QD=24.80;SOR=0.883;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",2764570,".","T","A","0/0","1/1",1564.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027330360.1-1-exon-XM_004485782.3-1|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|intergenic_region|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|||n.2764570T>A||||||;DP=134;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.95;QD=25.23;SOR=1.234;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",2766545,".","T","A","0/0","1/1",2249.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027330360.1-1-exon-XM_004485782.3-1|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|intergenic_region|GENE_exon-XM_027330360.1-1-GENE_exon-XM_004485782.3-1|||n.2766545T>A||||||;DP=93;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.92;QD=32.81;SOR=0.900;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2793659,".","T","A","0/0","1/1",1413.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485784.3-1|GENE_exon-XM_004485784.3-1|transcript|rna-XM_004485784.3|protein_coding||c.-5507A>T|||||4701|,A|upstream_gene_variant|MODIFIER|exon-XM_012714959.2-1|GENE_exon-XM_012714959.2-1|transcript|rna-XM_012714959.2|protein_coding||c.-5507A>T|||||4701|,A|downstream_gene_variant|MODIFIER|LOC101512237|gene-LOC101512237|transcript|XM_004485784.3|protein_coding||c.*7959T>A|||||4701|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101512565|gene-LOC101512565|transcript|XM_004485785.3|protein_coding||c.*1623T>A|||||118|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485785.3-1|GENE_exon-XM_004485785.3-1|transcript|rna-XM_004485785.3|protein_coding||c.*325T>A|||||118|,A|downstream_gene_variant|MODIFIER|LOC101512237|gene-LOC101512237|transcript|XM_012714959.2|protein_coding||c.*7959T>A|||||4701|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004485785.3-1-LOC101512871|GENE_exon-XM_004485785.3-1-LOC101512871|intergenic_region|GENE_exon-XM_004485785.3-1-LOC101512871|||n.2793659T>A||||||;DP=93;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=48.12;QD=24.80;SOR=0.960;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2799130,".","C","T","0/0","1/1",775.42,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101512871|LOC101512871|transcript|gene-LOC101512871|pseudogene||n.-1085C>T|||||1085|,T|intergenic_region|MODIFIER|exon-XM_004485785.3-1-LOC101512871|GENE_exon-XM_004485785.3-1-LOC101512871|intergenic_region|GENE_exon-XM_004485785.3-1-LOC101512871|||n.2799130C>T||||||;DP=59;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.46;QD=30.00;SOR=1.179;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2801966,".","T","C","0/0","1/1",518.42,"MQ40;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_012713809.2|protein_coding||c.-7949T>C|||||4675|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_012713809.2-1|GENE_exon-XM_012713809.2-1|transcript|rna-XM_012713809.2|protein_coding||c.-4747T>C|||||4675|,C|upstream_gene_variant|MODIFIER|exon-XM_027330366.1-1|GENE_exon-XM_027330366.1-1|transcript|rna-XM_027330366.1|protein_coding||c.-4747T>C|||||4675|,C|upstream_gene_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_027330366.1|protein_coding||c.-7949T>C|||||4675|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|LOC101512871|LOC101512871|transcript|gene-LOC101512871|pseudogene|3/3|n.500-895T>C||||||;DP=57;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=39.46;QD=27.77;SOR=0.836;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2802656,".","C","A","0/0","0/1",122.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_012713809.2|protein_coding||c.-7259C>A|||||3985|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012713809.2-1|GENE_exon-XM_012713809.2-1|transcript|rna-XM_012713809.2|protein_coding||c.-4057C>A|||||3985|,A|upstream_gene_variant|MODIFIER|exon-XM_027330366.1-1|GENE_exon-XM_027330366.1-1|transcript|rna-XM_027330366.1|protein_coding||c.-4057C>A|||||3985|,A|upstream_gene_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_027330366.1|protein_coding||c.-7259C>A|||||3985|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|LOC101512871|LOC101512871|transcript|gene-LOC101512871|pseudogene|3/3|n.500-205C>A||||||;BaseQRankSum=2.70;ClippingRankSum=0.00;DP=126;ExcessHet=3.0103;FS=3.063;MLEAC=1;MLEAF=0.250;MQ=58.83;MQRankSum=-8.516e+00;QD=1.45;ReadPosRankSum=0.058;SOR=1.287;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2807798,".","A","T","0/0","1/1",730.42,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|synonymous_variant|LOW|exon-XM_012713809.2-1|GENE_exon-XM_012713809.2-1|transcript|rna-XM_012713809.2|protein_coding|1/3|c.1086A>T|p.Ser362Ser|1158/2250|1086/1647|362/548||,T|synonymous_variant|LOW|exon-XM_027330366.1-1|GENE_exon-XM_027330366.1-1|transcript|rna-XM_027330366.1|protein_coding|2/4|c.1044A>T|p.Ser348Ser|1116/2208|1044/1605|348/534||,T|downstream_gene_variant|MODIFIER|LOC101512871|LOC101512871|transcript|gene-LOC101512871|pseudogene||n.*4160A>T|||||4160|,T|non_coding_transcript_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_012713809.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_027330366.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=50;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=52.39;QD=32.58;SOR=1.739;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2808250,".","T","A","0/0","1/1",146.17,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|missense_variant|MODERATE|exon-XM_012713809.2-1|GENE_exon-XM_012713809.2-1|transcript|rna-XM_012713809.2|protein_coding|1/3|c.1538T>A|p.Ile513Lys|1610/2250|1538/1647|513/548||,A|missense_variant|MODERATE|exon-XM_027330366.1-1|GENE_exon-XM_027330366.1-1|transcript|rna-XM_027330366.1|protein_coding|2/4|c.1496T>A|p.Ile499Lys|1568/2208|1496/1605|499/534||,A|downstream_gene_variant|MODIFIER|LOC101512871|LOC101512871|transcript|gene-LOC101512871|pseudogene||n.*4612T>A|||||4612|,A|non_coding_transcript_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_012713809.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_027330366.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=43;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=30.00;QD=32.87;SOR=3.258;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2810459,".","A","C","0/0","0/1",683.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_012713809.2|protein_coding||c.*3818A>C|||||544|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_012713809.2-1|GENE_exon-XM_012713809.2-1|transcript|rna-XM_012713809.2|protein_coding||c.*2100A>C|||||544|,C|downstream_gene_variant|MODIFIER|exon-XM_027330366.1-1|GENE_exon-XM_027330366.1-1|transcript|rna-XM_027330366.1|protein_coding||c.*2100A>C|||||544|,C|downstream_gene_variant|MODIFIER|LOC101513197|gene-LOC101513197|transcript|XM_027330366.1|protein_coding||c.*3818A>C|||||544|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_012713809.2-1-exon-XM_027336141.1-1|GENE_exon-XM_012713809.2-1-GENE_exon-XM_027336141.1-1|intergenic_region|GENE_exon-XM_012713809.2-1-GENE_exon-XM_027336141.1-1|||n.2810459A>C||||||;BaseQRankSum=-1.614e+00;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.250;MQ=53.70;MQRankSum=-6.058e+00;QD=11.02;ReadPosRankSum=1.41;SOR=0.527;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2846308,".","A","ATATAG","0/0","1/1",566.38,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=ATATAG|intergenic_region|MODIFIER|exon-XM_004485787.3-1-exon-XM_027330378.1-1|GENE_exon-XM_004485787.3-1-GENE_exon-XM_027330378.1-1|intergenic_region|GENE_exon-XM_004485787.3-1-GENE_exon-XM_027330378.1-1|||n.2846308_2846309insTATAG||||||;DP=49;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=44.55;QD=29.84;SOR=1.329;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",2857673,".","G","A","0/0","0/1",49.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|missense_variant|MODERATE|exon-XM_027330375.1-1|GENE_exon-XM_027330375.1-1|transcript|rna-XM_027330375.1|protein_coding|1/3|c.1841C>T|p.Thr614Ile|1979/3976|1841/3756|614/1251||,A|upstream_gene_variant|MODIFIER|exon-XM_027330378.1-1|GENE_exon-XM_027330378.1-1|transcript|rna-XM_027330378.1|protein_coding||c.-3139C>T|||||2247|,A|upstream_gene_variant|MODIFIER|LOC101515038|gene-LOC101515038|transcript|XM_004485791.3|protein_coding||c.-8301G>A|||||3580|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004485791.3-1|GENE_exon-XM_004485791.3-1|transcript|rna-XM_004485791.3|protein_coding||c.-3923G>A|||||3580|,A|downstream_gene_variant|MODIFIER|LOC101512435|gene-LOC101512435|transcript|XM_027330378.1|protein_coding||c.*4062G>A|||||2247|WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC113783936|gene-LOC113783936|transcript|XM_027330375.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=3.10;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=6.513;MLEAC=1;MLEAF=0.250;MQ=57.85;MQRankSum=-7.264e+00;QD=0.77;ReadPosRankSum=-1.294e+00;SOR=2.274;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2862208,".","G","A","0/0","1/1",1614.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_027330375.1-1|GENE_exon-XM_027330375.1-1|transcript|rna-XM_027330375.1|protein_coding||c.-2695C>T|||||2557|,A|downstream_gene_variant|MODIFIER|LOC113783936|gene-LOC113783936|transcript|XM_027330375.1|protein_coding||c.*6775G>A|||||2557|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|exon-XM_004485791.3-1|GENE_exon-XM_004485791.3-1|transcript|rna-XM_004485791.3|protein_coding|1/3|c.126+487G>A||||||,A|non_coding_transcript_variant|MODIFIER|LOC101515038|gene-LOC101515038|transcript|XM_004485791.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=110;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.84;SOR=1.000;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",2867286,".","G","A","0/0","1/1",1458.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101515361|gene-LOC101515361|transcript|XM_012713812.2|protein_coding||c.-6686G>A|||||744|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012713812.2-1|GENE_exon-XM_012713812.2-1|transcript|rna-XM_012713812.2|protein_coding||c.-765G>A|||||744|,A|downstream_gene_variant|MODIFIER|LOC101515038|gene-LOC101515038|transcript|XM_004485791.3|protein_coding||c.*6033G>A|||||1312|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485791.3-1|GENE_exon-XM_004485791.3-1|transcript|rna-XM_004485791.3|protein_coding||c.*1635G>A|||||1312|,A|intergenic_region|MODIFIER|exon-XM_004485791.3-1-exon-XM_012713812.2-1|GENE_exon-XM_004485791.3-1-GENE_exon-XM_012713812.2-1|intergenic_region|GENE_exon-XM_004485791.3-1-GENE_exon-XM_012713812.2-1|||n.2867286G>A||||||;DP=96;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.48;QD=24.72;SOR=0.871;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",2874413,".","G","T","0/0","1/1",2070.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|UGT79B21|gene-UGT79B21|transcript|XM_004485793.3|protein_coding||c.-2817G>T|||||1080|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004485793.3-1|GENE_exon-XM_004485793.3-1|transcript|rna-XM_004485793.3|protein_coding||c.-1312G>T|||||1080|,T|upstream_gene_variant|MODIFIER|LOC101512754|gene-LOC101512754|transcript|XM_027336157.1|protein_coding||c.-12044G>T|||||3473|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_027336157.1-1|GENE_exon-XM_027336157.1-1|transcript|rna-XM_027336157.1|protein_coding||c.-3473G>T|||||3473|,T|downstream_gene_variant|MODIFIER|LOC101515361|gene-LOC101515361|transcript|XM_012713812.2|protein_coding||c.*6383G>T|||||441|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_012713812.2-1|GENE_exon-XM_012713812.2-1|transcript|rna-XM_012713812.2|protein_coding||c.*679G>T|||||441|,T|intergenic_region|MODIFIER|exon-XM_012713812.2-1-exon-XM_004485793.3-1|GENE_exon-XM_012713812.2-1-GENE_exon-XM_004485793.3-1|intergenic_region|GENE_exon-XM_012713812.2-1-GENE_exon-XM_004485793.3-1|||n.2874413G>T||||||;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.04;QD=32.91;SOR=0.963;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",2877886,".","A","G","0/0","1/1",2824.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|start_lost|HIGH|exon-XM_027336157.1-1|GENE_exon-XM_027336157.1-1|transcript|rna-XM_027336157.1|protein_coding|1/11|c.1A>G|p.Met1?|1/5086|1/3654|1/1217||,G|downstream_gene_variant|MODIFIER|LOC101515361|gene-LOC101515361|transcript|XM_012713812.2|protein_coding||c.*9856A>G|||||3914|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012713812.2-1|GENE_exon-XM_012713812.2-1|transcript|rna-XM_012713812.2|protein_coding||c.*4152A>G|||||3914|,G|downstream_gene_variant|MODIFIER|UGT79B21|gene-UGT79B21|transcript|XM_004485793.3|protein_coding||c.*2393A>G|||||656|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485793.3-1|GENE_exon-XM_004485793.3-1|transcript|rna-XM_004485793.3|protein_coding||c.*785A>G|||||656|,G|non_coding_transcript_variant|MODIFIER|LOC101512754|gene-LOC101512754|transcript|XM_027336157.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=95;ExcessHet=0.7918;FS=0.000;LOF=(exon-XM_027336157.1-1|GENE_exon-XM_027336157.1-1|1|1.00);MLEAC=2;MLEAF=0.500;MQ=53.39;QD=34.36;SOR=1.057;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",2884405,".","AGAGACATT","A","0/0","0/1",2086.15,"MQ40","AC=1;AF=0.250;AN=4;ANN=A|3_prime_UTR_variant|MODIFIER|exon-XM_027336157.1-1|GENE_exon-XM_027336157.1-1|transcript|rna-XM_027336157.1|protein_coding|6/11|c.*336_*343delGAGACATT|||||527|,A|upstream_gene_variant|MODIFIER|LOC101488453|gene-LOC101488453|transcript|XM_012717995.2|protein_coding||c.-4203_-4196delGAGACATT|||||3271|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012717995.2-1|GENE_exon-XM_012717995.2-1|transcript|rna-XM_012717995.2|protein_coding||c.*3617_*3624delAATGTCTC|||||3271|,A|non_coding_transcript_variant|MODIFIER|LOC101512754|gene-LOC101512754|transcript|XM_027336157.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.49;ClippingRankSum=0.00;DP=140;ExcessHet=3.0103;FS=6.195;MLEAC=1;MLEAF=0.250;MQ=36.51;MQRankSum=2.25;QD=20.25;ReadPosRankSum=2.46;SOR=1.262;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2893737,".","T","C","0/0","1/1",1729.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101489119|gene-LOC101489119|transcript|XM_004485796.3|protein_coding||c.-10334T>C|||||2539|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485796.3-1|GENE_exon-XM_004485796.3-1|transcript|rna-XM_004485796.3|protein_coding||c.-2966T>C|||||2539|,C|downstream_gene_variant|MODIFIER|LOC101488789|gene-LOC101488789|transcript|XM_004485795.3|protein_coding||c.*4274T>C|||||821|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485795.3-1|GENE_exon-XM_004485795.3-1|transcript|rna-XM_004485795.3|protein_coding||c.*1212T>C|||||821|,C|intergenic_region|MODIFIER|exon-XM_004485795.3-1-exon-XM_004485796.3-1|GENE_exon-XM_004485795.3-1-GENE_exon-XM_004485796.3-1|intergenic_region|GENE_exon-XM_004485795.3-1-GENE_exon-XM_004485796.3-1|||n.2893737T>C||||||;DP=108;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.02;SOR=0.934;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",2950593,".","G","A","0/0","1/1",1595.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101491273|gene-LOC101491273|transcript|XM_004485803.3|protein_coding||c.-2811G>A|||||1876|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101490960|gene-LOC101490960|transcript|XM_004485802.3|protein_coding||c.*2701G>A|||||1761|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004485802.3-1|GENE_exon-XM_004485802.3-1|transcript|rna-XM_004485802.3|protein_coding||c.*2100G>A|||||1761|,A|downstream_gene_variant|MODIFIER|exon-XM_004485803.3-1|GENE_exon-XM_004485803.3-1|transcript|rna-XM_004485803.3|protein_coding||c.*1968C>T|||||1876|,A|intergenic_region|MODIFIER|exon-XM_004485802.3-1-exon-XM_004485803.3-1|GENE_exon-XM_004485802.3-1-GENE_exon-XM_004485803.3-1|intergenic_region|GENE_exon-XM_004485802.3-1-GENE_exon-XM_004485803.3-1|||n.2950593G>A||||||;DP=73;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=50.25;QD=31.76;SOR=1.148;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",3079234,".","T","C","0/0","1/1",2428.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101497322|gene-LOC101497322|transcript|XM_004485822.3|protein_coding||c.-4107T>C|||||1016|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485822.3-1|GENE_exon-XM_004485822.3-1|transcript|rna-XM_004485822.3|protein_coding||c.-1049T>C|||||1016|,C|upstream_gene_variant|MODIFIER|LOC101497643|gene-LOC101497643|transcript|XM_004485823.3|protein_coding||c.-7436T>C|||||4457|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004485823.3-1|GENE_exon-XM_004485823.3-1|transcript|rna-XM_004485823.3|protein_coding||c.-4656T>C|||||4457|,C|downstream_gene_variant|MODIFIER|LOC101496997|gene-LOC101496997|transcript|XM_004485821.3|protein_coding||c.*6589T>C|||||1599|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485821.3-1|GENE_exon-XM_004485821.3-1|transcript|rna-XM_004485821.3|protein_coding||c.*1680T>C|||||1599|,C|intergenic_region|MODIFIER|exon-XM_004485821.3-1-exon-XM_004485822.3-1|GENE_exon-XM_004485821.3-1-GENE_exon-XM_004485822.3-1|intergenic_region|GENE_exon-XM_004485821.3-1-GENE_exon-XM_004485822.3-1|||n.3079234T>C||||||;DP=96;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.94;QD=31.79;SOR=0.796;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",3089710,".","T","C","0/0","1/1",2175.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004485824.3-1|GENE_exon-XM_004485824.3-1|transcript|rna-XM_004485824.3|protein_coding||c.-709A>G|||||558|,C|upstream_gene_variant|MODIFIER|LOC101498307|gene-LOC101498307|transcript|XM_004485825.3|protein_coding||c.-3346T>C|||||1257|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101497643|gene-LOC101497643|transcript|XM_004485823.3|protein_coding||c.*6019T>C|||||3040|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485823.3-1|GENE_exon-XM_004485823.3-1|transcript|rna-XM_004485823.3|protein_coding||c.*3192T>C|||||3040|,C|downstream_gene_variant|MODIFIER|LOC101497979|gene-LOC101497979|transcript|XM_004485824.3|protein_coding||c.*2200T>C|||||558|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004485825.3-1|GENE_exon-XM_004485825.3-1|transcript|rna-XM_004485825.3|protein_coding||c.*1557A>G|||||1257|,C|intergenic_region|MODIFIER|exon-XM_004485824.3-1-exon-XM_004485825.3-1|GENE_exon-XM_004485824.3-1-GENE_exon-XM_004485825.3-1|intergenic_region|GENE_exon-XM_004485824.3-1-GENE_exon-XM_004485825.3-1|||n.3089710T>C||||||;DP=87;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.69;QD=38.15;SOR=0.963;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",3132377,".","A","G","0/0","1/1",1720.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101499293|gene-LOC101499293|transcript|XM_004485827.3|protein_coding||c.-3445A>G|||||1576|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004485827.3-1|GENE_exon-XM_004485827.3-1|transcript|rna-XM_004485827.3|protein_coding||c.-1624A>G|||||1576|,G|downstream_gene_variant|MODIFIER|TRNAA-UGC|gene-TRNAA-UGC|transcript|rna-TRNAA-UGC|protein_coding||c.*1443T>C|||||1443|WARNING_TRANSCRIPT_INCOMPLETE,G|intergenic_region|MODIFIER|exon-XM_004485826.3-1-TRNAA-UGC|GENE_exon-XM_004485826.3-1-gene-TRNAA-UGC|intergenic_region|GENE_exon-XM_004485826.3-1-gene-TRNAA-UGC|||n.3132377A>G||||||;DP=79;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.25;QD=27.69;SOR=1.387;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",3135413,".","A","G","0/0","1/1",1294.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|splice_region_variant&synonymous_variant|LOW|exon-XM_004485827.3-1|GENE_exon-XM_004485827.3-1|transcript|rna-XM_004485827.3|protein_coding|2/2|c.195A>G|p.Gly65Gly|243/652|195/447|65/148||,G|upstream_gene_variant|MODIFIER|TRNAA-UGC|gene-TRNAA-UGC|transcript|rna-TRNAA-UGC|protein_coding||c.-1521T>C|||||1521|WARNING_TRANSCRIPT_INCOMPLETE,G|upstream_gene_variant|MODIFIER|LOC101499609|LOC101499609|transcript|gene-LOC101499609|pseudogene||n.-4368A>G|||||4368|,G|non_coding_transcript_variant|MODIFIER|LOC101499293|gene-LOC101499293|transcript|XM_004485827.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.53;SOR=0.729;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",3139060,".","A","T","0/0","1/1",1797.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101499609|LOC101499609|transcript|gene-LOC101499609|pseudogene||n.-721A>T|||||721|,T|upstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XM_004485829.2|protein_coding||c.-10367A>T|||||3763|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XR_001144032.2|pseudogene||n.-10367A>T|||||3763|,T|upstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XR_001144068.2|pseudogene||n.-10367A>T|||||3763|,T|downstream_gene_variant|MODIFIER|LOC101499293|gene-LOC101499293|transcript|XM_004485827.3|protein_coding||c.*5107A>T|||||3238|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485827.3-1|GENE_exon-XM_004485827.3-1|transcript|rna-XM_004485827.3|protein_coding||c.*3395A>T|||||3238|,T|downstream_gene_variant|MODIFIER|exon-XM_004485829.2-1|GENE_exon-XM_004485829.2-1|transcript|rna-XM_004485829.2|protein_coding||c.*4189T>A|||||3763|,T|downstream_gene_variant|MODIFIER|exon-XR_001144032.2-1|GENE_exon-XR_001144032.2-1|transcript|rna-XR_001144032.2|pseudogene||n.*3763T>A|||||3763|,T|downstream_gene_variant|MODIFIER|exon-XR_001144068.2-1|GENE_exon-XR_001144068.2-1|transcript|rna-XR_001144068.2|pseudogene||n.*3763T>A|||||3763|,T|intergenic_region|MODIFIER|exon-XM_004485827.3-1-LOC101499609|GENE_exon-XM_004485827.3-1-LOC101499609|intergenic_region|GENE_exon-XM_004485827.3-1-LOC101499609|||n.3139060A>T||||||;DP=81;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.75;QD=29.99;SOR=1.259;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",3150510,".","A","G","0/0","1/1",1405.42,"MQ40","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004485829.2-1|GENE_exon-XM_004485829.2-1|transcript|rna-XM_004485829.2|protein_coding||c.-1173T>C|||||1083|,G|upstream_gene_variant|MODIFIER|exon-XR_001144032.2-1|GENE_exon-XR_001144032.2-1|transcript|rna-XR_001144032.2|pseudogene||n.-1083T>C|||||1083|,G|upstream_gene_variant|MODIFIER|exon-XR_001144068.2-1|GENE_exon-XR_001144068.2-1|transcript|rna-XR_001144068.2|pseudogene||n.-1083T>C|||||1083|,G|upstream_gene_variant|MODIFIER|LOC101500253|gene-LOC101500253|transcript|XM_004485830.3|protein_coding||c.-4709A>G|||||697|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XM_004485829.2|protein_coding||c.*7687A>G|||||1083|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004485830.3-1|GENE_exon-XM_004485830.3-1|transcript|rna-XM_004485830.3|protein_coding||c.*905T>C|||||697|,G|downstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XR_001144032.2|pseudogene||n.*7687A>G|||||1083|,G|downstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XR_001144068.2|pseudogene||n.*7687A>G|||||1083|,G|intergenic_region|MODIFIER|exon-XM_004485829.2-1-exon-XM_004485830.3-1|GENE_exon-XM_004485829.2-1-GENE_exon-XM_004485830.3-1|intergenic_region|GENE_exon-XM_004485829.2-1-GENE_exon-XM_004485830.3-1|||n.3150510A>G||||||;DP=69;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=38.50;QD=31.12;SOR=1.044;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",3152811,".","C","A","0/0","1/1",1289.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004485829.2-1|GENE_exon-XM_004485829.2-1|transcript|rna-XM_004485829.2|protein_coding||c.-3474G>T|||||3384|,A|upstream_gene_variant|MODIFIER|exon-XR_001144032.2-1|GENE_exon-XR_001144032.2-1|transcript|rna-XR_001144032.2|pseudogene||n.-3384G>T|||||3384|,A|upstream_gene_variant|MODIFIER|exon-XR_001144068.2-1|GENE_exon-XR_001144068.2-1|transcript|rna-XR_001144068.2|pseudogene||n.-3384G>T|||||3384|,A|downstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XM_004485829.2|protein_coding||c.*9988C>A|||||3384|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XR_001144032.2|pseudogene||n.*9988C>A|||||3384|,A|downstream_gene_variant|MODIFIER|LOC101499915|gene-LOC101499915|transcript|XR_001144068.2|pseudogene||n.*9988C>A|||||3384|,A|intron_variant|MODIFIER|exon-XM_004485830.3-1|GENE_exon-XM_004485830.3-1|transcript|rna-XM_004485830.3|protein_coding|1/1|c.465-550G>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101500253|gene-LOC101500253|transcript|XM_004485830.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=90;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.69;QD=24.80;SOR=1.480;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",3156508,".","C","T","0/0","1/1",1112.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004485830.3-1|GENE_exon-XM_004485830.3-1|transcript|rna-XM_004485830.3|protein_coding||c.-1544G>A|||||1289|,T|downstream_gene_variant|MODIFIER|LOC101500253|gene-LOC101500253|transcript|XM_004485830.3|protein_coding||c.*5301C>T|||||1289|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004485830.3-1-TRNAG-GCC|GENE_exon-XM_004485830.3-1-gene-TRNAG-GCC|intergenic_region|GENE_exon-XM_004485830.3-1-gene-TRNAG-GCC|||n.3156508C>T||||||;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.72;SOR=1.154;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",3286989,".","G","A","0/0","1/1",1657.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101506021|gene-LOC101506021|transcript|XM_027330437.1|protein_coding||c.-9769G>A|||||3847|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_027330437.1-1|GENE_exon-XM_027330437.1-1|transcript|rna-XM_027330437.1|protein_coding||c.-4685G>A|||||3847|,A|intergenic_region|MODIFIER|exon-XM_004485847.3-1-exon-XM_027330437.1-1|GENE_exon-XM_004485847.3-1-GENE_exon-XM_027330437.1-1|intergenic_region|GENE_exon-XM_004485847.3-1-GENE_exon-XM_027330437.1-1|||n.3286989G>A||||||;DP=105;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.98;QD=25.11;SOR=0.886;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",4053445,".","C","T","0/0","1/1",1164.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004486228.3-1|GENE_exon-XM_004486228.3-1|transcript|rna-XM_004486228.3|protein_coding||c.-2072G>A|||||2072|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101511365|gene-LOC101511365|transcript|XM_004485958.2|protein_coding||c.-5271C>T|||||4170|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491380|gene-LOC101491380|transcript|XM_004486228.3|protein_coding||c.*5706C>T|||||2072|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004485958.2-1|GENE_exon-XM_004485958.2-1|transcript|rna-XM_004485958.2|protein_coding||c.*4336G>A|||||4170|,T|intergenic_region|MODIFIER|exon-XM_004486228.3-1-exon-XM_004485958.2-1|GENE_exon-XM_004486228.3-1-GENE_exon-XM_004485958.2-1|intergenic_region|GENE_exon-XM_004486228.3-1-GENE_exon-XM_004485958.2-1|||n.4053445C>T||||||;DP=81;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.26;SOR=0.776;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",4316104,".","ATCTC","A","1/1","0/0",1245.39,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004486234.3-1|GENE_exon-XM_004486234.3-1|transcript|rna-XM_004486234.3|protein_coding||c.-4949_-4946delGAGA|||||4855|,A|upstream_gene_variant|MODIFIER|LOC101490964|gene-LOC101490964|transcript|XM_012713003.2|protein_coding||c.-8713_-8710delTCTC|||||3932|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101490964|gene-LOC101490964|transcript|XM_012713004.2|protein_coding||c.-8713_-8710delTCTC|||||3932|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101493667|gene-LOC101493667|transcript|XM_004486234.3|protein_coding||c.*6243_*6246delTCTC|||||4855|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012713003.2-1|GENE_exon-XM_012713003.2-1|transcript|rna-XM_012713003.2|protein_coding||c.*4765_*4768delGAGA|||||3932|,A|downstream_gene_variant|MODIFIER|exon-XM_012713004.2-1|GENE_exon-XM_012713004.2-1|transcript|rna-XM_012713004.2|protein_coding||c.*4765_*4768delGAGA|||||3932|,A|intergenic_region|MODIFIER|exon-XM_004486234.3-1-exon-XM_012713003.2-1|GENE_exon-XM_004486234.3-1-GENE_exon-XM_012713003.2-1|intergenic_region|GENE_exon-XM_004486234.3-1-GENE_exon-XM_012713003.2-1|||n.4316105_4316108delTCTC||||||;DP=66;ExcessHet=0.7918;FS=1.370;MLEAC=2;MLEAF=0.500;MQ=51.69;QD=28.82;SOR=1.051;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",4566241,".","C","T","0/0","1/1",1634.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027336209.1-1|GENE_exon-XM_027336209.1-1|transcript|rna-XM_027336209.1|protein_coding||c.-1525G>A|||||1525|,T|upstream_gene_variant|MODIFIER|LOC101500991|gene-LOC101500991|transcript|XM_004486014.3|protein_coding||c.-5695C>T|||||674|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004486014.3-1|GENE_exon-XM_004486014.3-1|transcript|rna-XM_004486014.3|protein_coding||c.-2214C>T|||||674|,T|upstream_gene_variant|MODIFIER|exon-XM_027330724.1-1|GENE_exon-XM_027330724.1-1|transcript|rna-XM_027330724.1|protein_coding||c.-2214C>T|||||674|,T|upstream_gene_variant|MODIFIER|LOC101500991|gene-LOC101500991|transcript|XM_027330724.1|protein_coding||c.-5695C>T|||||674|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101494929|gene-LOC101494929|transcript|XM_027336209.1|protein_coding||c.*8424C>T|||||1525|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027336209.1-1-exon-XM_004486014.3-1|GENE_exon-XM_027336209.1-1-GENE_exon-XM_004486014.3-1|intergenic_region|GENE_exon-XM_027336209.1-1-GENE_exon-XM_004486014.3-1|||n.4566241C>T||||||;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.97;QD=24.76;SOR=0.886;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",4900021,".","CATGGTTGTATCA","C","0/0","0/1",692.15,"PASS","AC=1;AF=0.250;AN=4;ANN=C|3_prime_UTR_variant|MODIFIER|exon-XM_004486049.3-1|GENE_exon-XM_004486049.3-1|transcript|rna-XM_004486049.3|protein_coding|1/1|c.*54_*65delATGGTTGTATCA|||||54|INFO_REALIGN_3_PRIME,C|upstream_gene_variant|MODIFIER|LOC101497883|gene-LOC101497883|transcript|XM_027330793.1|protein_coding||c.-3552_-3541delATGGTTGTATCA|||||79|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC113787258|gene-LOC113787258|transcript|XM_027336254.1|protein_coding||c.-4885_-4874delATGGTTGTATCA|||||3882|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_027330793.1-1|GENE_exon-XM_027330793.1-1|transcript|rna-XM_027330793.1|protein_coding||c.*1616_*1627delTGATACAACCAT|||||79|,C|downstream_gene_variant|MODIFIER|exon-XM_027336254.1-1|GENE_exon-XM_027336254.1-1|transcript|rna-XM_027336254.1|protein_coding||c.*3871_*3882delTGATACAACCAT|||||3882|,C|non_coding_transcript_variant|MODIFIER|LOC101512239|gene-LOC101512239|transcript|XM_004486049.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON&INFO_REALIGN_3_PRIME;BaseQRankSum=-8.280e-01;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=9.454;MLEAC=1;MLEAF=0.250;MQ=58.14;MQRankSum=-7.795e+00;QD=9.89;ReadPosRankSum=0.261;SOR=1.281;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",4906248,".","T","C","0/0","0/1",855.19,"BQB","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_027330793.1-1|GENE_exon-XM_027330793.1-1|transcript|rna-XM_027330793.1|protein_coding||c.-2803A>G|||||2674|,C|upstream_gene_variant|MODIFIER|exon-XM_027336254.1-1|GENE_exon-XM_027336254.1-1|transcript|rna-XM_027336254.1|protein_coding||c.-1547A>G|||||1341|,C|downstream_gene_variant|MODIFIER|LOC101497883|gene-LOC101497883|transcript|XM_027330793.1|protein_coding||c.*6147T>C|||||2674|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC113787258|gene-LOC113787258|transcript|XM_027336254.1|protein_coding||c.*2344T>C|||||1341|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|exon-XM_027336257.1-1|GENE_exon-XM_027336257.1-1|transcript|rna-XM_027336257.1|protein_coding|4/4|c.*109+41A>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101498529|gene-LOC101498529|transcript|XM_027336257.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-6.268e+00;ClippingRankSum=0.00;DP=141;ExcessHet=3.0103;FS=22.992;MLEAC=1;MLEAF=0.250;MQ=59.09;MQRankSum=-4.550e+00;QD=8.47;ReadPosRankSum=-1.174e+00;SOR=2.851;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",4907397,".","G","C","0/0","0/1",629.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|missense_variant|MODERATE|exon-XM_027336257.1-1|GENE_exon-XM_027336257.1-1|transcript|rna-XM_027336257.1|protein_coding|3/5|c.2782C>G|p.Gln928Glu|2951/4300|2782/3555|928/1184||,C|upstream_gene_variant|MODIFIER|exon-XM_027330793.1-1|GENE_exon-XM_027330793.1-1|transcript|rna-XM_027330793.1|protein_coding||c.-3952C>G|||||3823|,C|upstream_gene_variant|MODIFIER|exon-XM_027336254.1-1|GENE_exon-XM_027336254.1-1|transcript|rna-XM_027336254.1|protein_coding||c.-2696C>G|||||2490|,C|downstream_gene_variant|MODIFIER|LOC101497883|gene-LOC101497883|transcript|XM_027330793.1|protein_coding||c.*7296G>C|||||3823|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC113787258|gene-LOC113787258|transcript|XM_027336254.1|protein_coding||c.*3493G>C|||||2490|WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101498529|gene-LOC101498529|transcript|XM_027336257.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-4.310e-01;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.250;MQ=52.34;MQRankSum=-7.492e+00;QD=9.99;ReadPosRankSum=-9.900e-02;SOR=0.863;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",5389287,".","T","G","0/0","1/1",703.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_027336278.1-1|GENE_exon-XM_027336278.1-1|transcript|rna-XM_027336278.1|protein_coding||c.-2337A>C|||||2337|,G|upstream_gene_variant|MODIFIER|LOC101500677|gene-LOC101500677|transcript|XM_004486100.3|protein_coding||c.-1855T>G|||||929|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101500779|gene-LOC101500779|transcript|XM_004486250.2|protein_coding||c.*4581T>G|||||3834|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004486250.2-1|GENE_exon-XM_004486250.2-1|transcript|rna-XM_004486250.2|protein_coding||c.*3834T>G|||||3834|,G|downstream_gene_variant|MODIFIER|LOC113787271|gene-LOC113787271|transcript|XM_027336278.1|protein_coding||c.*3583T>G|||||2337|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004486100.3-1|GENE_exon-XM_004486100.3-1|transcript|rna-XM_004486100.3|protein_coding||c.*1108A>C|||||929|,G|intergenic_region|MODIFIER|exon-XM_027336278.1-1-exon-XM_004486100.3-1|GENE_exon-XM_027336278.1-1-GENE_exon-XM_004486100.3-1|intergenic_region|GENE_exon-XM_027336278.1-1-GENE_exon-XM_004486100.3-1|||n.5389287T>G||||||;DP=68;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.45;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",6132351,".","T","G","0/1","1/1",1708.19,"MQ40","AC=3;AF=0.750;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101496018|gene-LOC101496018|transcript|XM_004486169.3|protein_coding||c.*2174T>G|||||1483|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004486169.3-1|GENE_exon-XM_004486169.3-1|transcript|rna-XM_004486169.3|protein_coding||c.*1748T>G|||||1483|,G|intergenic_region|MODIFIER|exon-XM_004486169.3-1-exon-XM_004486170.3-1|GENE_exon-XM_004486169.3-1-GENE_exon-XM_004486170.3-1|intergenic_region|GENE_exon-XM_004486169.3-1-GENE_exon-XM_004486170.3-1|||n.6132351T>G||||||;BaseQRankSum=-2.210e+00;ClippingRankSum=0.00;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=38.95;MQRankSum=-4.462e+00;QD=15.82;ReadPosRankSum=1.45;SOR=0.760;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021160.1",6267873,".","G","A","0/1","1/1",2234.19,"BQB","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004486272.3-1|GENE_exon-XM_004486272.3-1|transcript|rna-XM_004486272.3|protein_coding||c.-4755C>T|||||3589|,A|upstream_gene_variant|MODIFIER|exon-XM_004486271.3-1|GENE_exon-XM_004486271.3-1|transcript|rna-XM_004486271.3|protein_coding||c.-4138C>T|||||3584|,A|downstream_gene_variant|MODIFIER|LOC101512242|gene-LOC101512242|transcript|XM_004486271.3|protein_coding||c.*5795G>A|||||3584|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101512242|gene-LOC101512242|transcript|XM_004486272.3|protein_coding||c.*5795G>A|||||3589|WARNING_TRANSCRIPT_NO_START_CODON,A|intron_variant|MODIFIER|exon-XM_004486273.3-1|GENE_exon-XM_004486273.3-1|transcript|rna-XM_004486273.3|protein_coding|1/1|c.-221-604C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101512755|gene-LOC101512755|transcript|XM_004486273.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=6.50;ClippingRankSum=0.00;DP=134;ExcessHet=3.0103;FS=0.728;MLEAC=3;MLEAF=0.750;MQ=42.02;MQRankSum=-2.845e+00;QD=16.67;ReadPosRankSum=-6.080e-01;SOR=0.775;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",6271032,".","T","TATATATATATATATATATATATATATATA","0/1","1/1",589.15,"mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=TATATATATATATATATATATATATATATA|upstream_gene_variant|MODIFIER|exon-XM_004486273.3-1|GENE_exon-XM_004486273.3-1|transcript|rna-XM_004486273.3|protein_coding||c.-3985_-3984insTATATATATATATATATATATATATATAT|||||979|,TATATATATATATATATATATATATATATA|downstream_gene_variant|MODIFIER|LOC101512755|gene-LOC101512755|transcript|XM_004486273.3|protein_coding||c.*5972_*5973insATATATATATATATATATATATATATATA|||||979|WARNING_TRANSCRIPT_NO_START_CODON,TATATATATATATATATATATATATATATA|intergenic_region|MODIFIER|exon-XM_004486273.3-1-exon-XM_004486274.2-1|GENE_exon-XM_004486273.3-1-GENE_exon-XM_004486274.2-1|intergenic_region|GENE_exon-XM_004486273.3-1-GENE_exon-XM_004486274.2-1|||n.6271032_6271033insATATATATATATATATATATATATATATA||||||;BaseQRankSum=-1.264e+00;ClippingRankSum=0.00;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=51.88;MQRankSum=-4.518e+00;QD=14.73;SOR=0.657;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",6310350,".","A","C","0/1","1/1",2475.19,"BQB","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004486277.3-1|GENE_exon-XM_004486277.3-1|transcript|rna-XM_004486277.3|protein_coding||c.-3776T>G|||||3702|,C|upstream_gene_variant|MODIFIER|exon-XM_004486278.3-1|GENE_exon-XM_004486278.3-1|transcript|rna-XM_004486278.3|protein_coding||c.-3776T>G|||||3701|,C|upstream_gene_variant|MODIFIER|LOC101514613|gene-LOC101514613|transcript|XM_004486279.2|protein_coding||c.-10104A>C|||||4250|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004486279.2-1|GENE_exon-XM_004486279.2-1|transcript|rna-XM_004486279.2|protein_coding||c.-4628A>C|||||4250|,C|upstream_gene_variant|MODIFIER|exon-XM_004486280.3-1|GENE_exon-XM_004486280.3-1|transcript|rna-XM_004486280.3|protein_coding||c.-4628A>C|||||4250|,C|upstream_gene_variant|MODIFIER|exon-XM_012714627.2-1|GENE_exon-XM_012714627.2-1|transcript|rna-XM_012714627.2|protein_coding||c.-6102A>C|||||4273|,C|upstream_gene_variant|MODIFIER|LOC101514613|gene-LOC101514613|transcript|XM_004486280.3|protein_coding||c.-10104A>C|||||4250|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101514613|gene-LOC101514613|transcript|XM_012714627.2|protein_coding||c.-10104A>C|||||4273|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101514061|gene-LOC101514061|transcript|XM_004486277.3|protein_coding||c.*6593A>C|||||3702|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101514061|gene-LOC101514061|transcript|XM_004486278.3|protein_coding||c.*6538A>C|||||3701|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|LOC101514061-exon-XM_004486279.2-1|gene-LOC101514061-GENE_exon-XM_004486279.2-1|intergenic_region|gene-LOC101514061-GENE_exon-XM_004486279.2-1|||n.6310350A>C||||||;BaseQRankSum=-5.148e+00;ClippingRankSum=0.00;DP=89;ExcessHet=3.0103;FS=1.890;MLEAC=3;MLEAF=0.750;MQ=43.51;MQRankSum=-5.952e+00;QD=28.45;ReadPosRankSum=-8.850e-01;SOR=0.467;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",6378796,".","C","T","0/1","1/1",2026.19,"BQB","AC=3;AF=0.750;AN=4;ANN=T|synonymous_variant|LOW|exon-XM_027333055.1-1|GENE_exon-XM_027333055.1-1|transcript|rna-XM_027333055.1|protein_coding|3/11|c.225C>T|p.Asp75Asp|397/2193|225/1725|75/574||,T|synonymous_variant|LOW|exon-XM_004486285.3-1|GENE_exon-XM_004486285.3-1|transcript|rna-XM_004486285.3|protein_coding|3/11|c.225C>T|p.Asp75Asp|396/2180|225/1713|75/570||,T|non_coding_transcript_variant|MODIFIER|LOC101489224|gene-LOC101489224|transcript|XM_004486285.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101489224|gene-LOC101489224|transcript|XM_027333055.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=5.70;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=0.792;MLEAC=3;MLEAF=0.750;MQ=42.43;MQRankSum=0.00;QD=17.03;ReadPosRankSum=1.99;SOR=0.678;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",6384123,".","TA","T","0/1","0/0",162.83,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101501214|gene-LOC101501214|transcript|XM_012713998.2|protein_coding||c.-4819delA|||||2374|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_027333055.1-1|GENE_exon-XM_027333055.1-1|transcript|rna-XM_027333055.1|protein_coding||c.*2704delA|||||2408|,T|downstream_gene_variant|MODIFIER|LOC101489224|gene-LOC101489224|transcript|XM_004486285.3|protein_coding||c.*6954delA|||||2408|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004486285.3-1|GENE_exon-XM_004486285.3-1|transcript|rna-XM_004486285.3|protein_coding||c.*2704delA|||||2408|,T|downstream_gene_variant|MODIFIER|exon-XM_012713998.2-1|GENE_exon-XM_012713998.2-1|transcript|rna-XM_012713998.2|protein_coding||c.*2555delT|||||2374|,T|downstream_gene_variant|MODIFIER|LOC101489224|gene-LOC101489224|transcript|XM_027333055.1|protein_coding||c.*6955delA|||||2408|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027333055.1-1-exon-XM_012713998.2-1|GENE_exon-XM_027333055.1-1-GENE_exon-XM_012713998.2-1|intergenic_region|GENE_exon-XM_027333055.1-1-GENE_exon-XM_012713998.2-1|||n.6384124delA||||||;BaseQRankSum=0.751;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=2.351;MLEAC=2;MLEAF=0.500;MQ=57.39;MQRankSum=-4.358e+00;QD=4.65;ReadPosRankSum=-1.641e+00;SOR=1.055;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",6386058,".","TTA","T","0/0","1/1",412.4,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101501214|gene-LOC101501214|transcript|XM_012713998.2|protein_coding||c.-2884_-2883delTA|||||439|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101489546|gene-LOC101489546|transcript|XM_004486286.3|protein_coding||c.-6832_-6831delTA|||||4033|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101489546|gene-LOC101489546|transcript|XM_027331054.1|protein_coding||c.-6832_-6831delTA|||||4033|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_027333055.1-1|GENE_exon-XM_027333055.1-1|transcript|rna-XM_027333055.1|protein_coding||c.*4639_*4640delTA|||||4343|,T|downstream_gene_variant|MODIFIER|LOC101489224|gene-LOC101489224|transcript|XM_004486285.3|protein_coding||c.*8889_*8890delTA|||||4343|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004486285.3-1|GENE_exon-XM_004486285.3-1|transcript|rna-XM_004486285.3|protein_coding||c.*4639_*4640delTA|||||4343|,T|downstream_gene_variant|MODIFIER|exon-XM_012713998.2-1|GENE_exon-XM_012713998.2-1|transcript|rna-XM_012713998.2|protein_coding||c.*619_*620delTA|||||439|,T|downstream_gene_variant|MODIFIER|exon-XM_004486286.3-1|GENE_exon-XM_004486286.3-1|transcript|rna-XM_004486286.3|protein_coding||c.*4646_*4647delTA|||||4033|,T|downstream_gene_variant|MODIFIER|exon-XM_027331054.1-1|GENE_exon-XM_027331054.1-1|transcript|rna-XM_027331054.1|protein_coding||c.*4646_*4647delTA|||||4033|,T|downstream_gene_variant|MODIFIER|LOC101489224|gene-LOC101489224|transcript|XM_027333055.1|protein_coding||c.*8890_*8891delTA|||||4343|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027333055.1-1-exon-XM_012713998.2-1|GENE_exon-XM_027333055.1-1-GENE_exon-XM_012713998.2-1|intergenic_region|GENE_exon-XM_027333055.1-1-GENE_exon-XM_012713998.2-1|||n.6386059_6386060delTA||||||;DP=38;ExcessHet=1.5490;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=51.32;QD=27.12;SOR=3.056;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",6398672,".","T","C","0/1","1/1",2430.19,"BQB","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004486286.3-1-exon-XM_004486287.3-1|GENE_exon-XM_004486286.3-1-GENE_exon-XM_004486287.3-1|intergenic_region|GENE_exon-XM_004486286.3-1-GENE_exon-XM_004486287.3-1|||n.6398672T>C||||||;BaseQRankSum=-4.438e+00;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=2.688;MLEAC=3;MLEAF=0.750;MQ=43.51;MQRankSum=-7.237e+00;QD=24.55;ReadPosRankSum=-1.038e+00;SOR=0.452;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",6404378,".","A","AT","0/1","0/0",688.15,"PASS","AC=1;AF=0.250;AN=4;ANN=AT|upstream_gene_variant|MODIFIER|LOC101489861|gene-LOC101489861|transcript|XM_004486287.3|protein_coding||c.-3575_-3574insT|||||1904|WARNING_TRANSCRIPT_NO_START_CODON,AT|downstream_gene_variant|MODIFIER|exon-XM_004486287.3-1|GENE_exon-XM_004486287.3-1|transcript|rna-XM_004486287.3|protein_coding||c.*2099_*2100insA|||||1904|,AT|intergenic_region|MODIFIER|exon-XM_004486286.3-1-exon-XM_004486287.3-1|GENE_exon-XM_004486286.3-1-GENE_exon-XM_004486287.3-1|intergenic_region|GENE_exon-XM_004486286.3-1-GENE_exon-XM_004486287.3-1|||n.6404378_6404379insT||||||;BaseQRankSum=0.027;ClippingRankSum=0.00;DP=100;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=12.29;ReadPosRankSum=0.466;SOR=0.379;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",6577097,".","C","T","0/1","0/0",17.12,"QD2;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101497884|gene-LOC101497884|transcript|XM_012714527.2|protein_coding||c.-11430C>T|||||4772|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_012714527.2-1|GENE_exon-XM_012714527.2-1|transcript|rna-XM_012714527.2|protein_coding||c.-5172C>T|||||4772|,T|intergenic_region|MODIFIER|exon-XM_004486315.3-1-exon-XM_012714527.2-1|GENE_exon-XM_004486315.3-1-GENE_exon-XM_012714527.2-1|intergenic_region|GENE_exon-XM_004486315.3-1-GENE_exon-XM_012714527.2-1|||n.6577097C>T||||||;BaseQRankSum=0.304;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=13.961;MLEAC=1;MLEAF=0.250;MQ=67.37;MQRankSum=-2.138e+00;QD=1.32;ReadPosRankSum=-5.920e-01;SOR=3.239;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",6696991,".","T","C","0/1","0/0",194.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|LOC113787542|gene-LOC113787542|transcript|XM_027336297.1|protein_coding||c.*2812T>C|||||1511|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_027336297.1-1|GENE_exon-XM_027336297.1-1|transcript|rna-XM_027336297.1|protein_coding||c.*1511T>C|||||1511|,C|intergenic_region|MODIFIER|exon-XM_027336297.1-1-exon-XM_012714580.2-1|GENE_exon-XM_027336297.1-1-GENE_exon-XM_012714580.2-1|intergenic_region|GENE_exon-XM_027336297.1-1-GENE_exon-XM_012714580.2-1|||n.6696991T>C||||||;BaseQRankSum=-2.969e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=59.72;MQRankSum=1.32;QD=5.39;ReadPosRankSum=0.271;SOR=0.527;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",6972058,".","TC","T","0/1","1/1",1685.15,"mrd30","AC=3;AF=0.750;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101514294|LOC101514294|transcript|gene-LOC101514294|pseudogene||n.-3012delC|||||3012|,T|intergenic_region|MODIFIER|exon-XM_012714477.2-1-LOC101514294|GENE_exon-XM_012714477.2-1-LOC101514294|intergenic_region|GENE_exon-XM_012714477.2-1-LOC101514294|||n.6972059delC||||||;BaseQRankSum=0.314;ClippingRankSum=0.00;DP=84;ExcessHet=3.0103;FS=6.158;MLEAC=3;MLEAF=0.750;MQ=46.56;MQRankSum=-3.280e+00;QD=20.30;ReadPosRankSum=-5.220e-01;SOR=1.193;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",7125560,".","C","T","0/1","1/1",2089.19,"BQB","AC=3;AF=0.750;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004486504.2-1|GENE_exon-XM_004486504.2-1|transcript|rna-XM_004486504.2|protein_coding||c.-809G>A|||||809|,T|upstream_gene_variant|MODIFIER|LOC101491602|gene-LOC101491602|transcript|XM_004486384.3|protein_coding||c.-42823C>T|||||548|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004486384.3-1|GENE_exon-XM_004486384.3-1|transcript|rna-XM_004486384.3|protein_coding||c.-1042C>T|||||548|,T|upstream_gene_variant|MODIFIER|exon-XM_004486385.3-1|GENE_exon-XM_004486385.3-1|transcript|rna-XM_004486385.3|protein_coding||c.-1042C>T|||||564|,T|upstream_gene_variant|MODIFIER|LOC101491602|gene-LOC101491602|transcript|XM_004486385.3|protein_coding||c.-42823C>T|||||564|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101504725|gene-LOC101504725|transcript|XM_004486504.2|protein_coding||c.*4782C>T|||||809|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004486504.2-1-exon-XM_004486384.3-1|GENE_exon-XM_004486504.2-1-GENE_exon-XM_004486384.3-1|intergenic_region|GENE_exon-XM_004486504.2-1-GENE_exon-XM_004486384.3-1|||n.7125560C>T||||||;BaseQRankSum=5.23;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=0.841;MLEAC=3;MLEAF=0.750;MQ=44.02;MQRankSum=0.00;QD=18.01;ReadPosRankSum=0.815;SOR=0.584;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",7343249,".","A","C","0/1","1/1",1327.19,"BQB","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_027331356.1-1|GENE_exon-XM_027331356.1-1|transcript|rna-XM_027331356.1|protein_coding||c.-2614T>G|||||1992|,C|downstream_gene_variant|MODIFIER|LOC101494402|gene-LOC101494402|transcript|XM_027331356.1|protein_coding||c.*13796A>C|||||1992|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|exon-XM_012714412.2-1|GENE_exon-XM_012714412.2-1|transcript|rna-XM_012714412.2|protein_coding|1/18|c.40-272T>G||||||,C|intron_variant|MODIFIER|exon-XM_012714414.2-1|GENE_exon-XM_012714414.2-1|transcript|rna-XM_012714414.2|protein_coding|1/18|c.40-272T>G||||||,C|intron_variant|MODIFIER|exon-XM_027331345.1-1|GENE_exon-XM_027331345.1-1|transcript|rna-XM_027331345.1|protein_coding|1/18|c.40-272T>G||||||,C|intron_variant|MODIFIER|exon-XM_027331347.1-1|GENE_exon-XM_027331347.1-1|transcript|rna-XM_027331347.1|protein_coding|1/18|c.40-272T>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101494402|gene-LOC101494402|transcript|XM_012714412.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494402|gene-LOC101494402|transcript|XM_012714414.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494402|gene-LOC101494402|transcript|XM_027331345.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101494402|gene-LOC101494402|transcript|XM_027331347.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-5.295e+00;ClippingRankSum=0.00;DP=86;ExcessHet=3.0103;FS=2.066;MLEAC=3;MLEAF=0.750;MQ=44.36;MQRankSum=0.00;QD=15.43;ReadPosRankSum=0.249;SOR=0.412;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",8134120,".","G","A","0/1","1/1",3275.19,"BQB;MQ40","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101489863|gene-LOC101489863|transcript|XM_004486461.3|protein_coding||c.-10829G>A|||||3062|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101489009|gene-LOC101489009|transcript|XM_012714120.2|protein_coding||c.*7145G>A|||||2146|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012714120.2-1|GENE_exon-XM_012714120.2-1|transcript|rna-XM_012714120.2|protein_coding||c.*2360G>A|||||2146|,A|downstream_gene_variant|MODIFIER|exon-XM_004486461.3-1|GENE_exon-XM_004486461.3-1|transcript|rna-XM_004486461.3|protein_coding||c.*3447C>T|||||3062|,A|intron_variant|MODIFIER|exon-XM_004486460.3-1|GENE_exon-XM_004486460.3-1|transcript|rna-XM_004486460.3|protein_coding|3/4|c.100-324C>T||||||,A|intron_variant|MODIFIER|exon-XM_004486459.3-1|GENE_exon-XM_004486459.3-1|transcript|rna-XM_004486459.3|protein_coding|3/4|c.100-324C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101489333|gene-LOC101489333|transcript|XM_004486459.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101489333|gene-LOC101489333|transcript|XM_004486460.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.89;ClippingRankSum=0.00;DP=124;ExcessHet=3.0103;FS=0.789;MLEAC=3;MLEAF=0.750;MQ=38.57;MQRankSum=-5.614e+00;QD=26.63;ReadPosRankSum=-1.998e+00;SOR=0.852;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",8136725,".","A","G","0/1","1/1",1487.19,"BQB","AC=3;AF=0.750;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004486460.3-1|GENE_exon-XM_004486460.3-1|transcript|rna-XM_004486460.3|protein_coding||c.-1069T>C|||||731|,G|upstream_gene_variant|MODIFIER|exon-XM_004486459.3-1|GENE_exon-XM_004486459.3-1|transcript|rna-XM_004486459.3|protein_coding||c.-1069T>C|||||662|,G|upstream_gene_variant|MODIFIER|LOC101489863|gene-LOC101489863|transcript|XM_004486461.3|protein_coding||c.-8224A>G|||||457|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101489009|gene-LOC101489009|transcript|XM_012714120.2|protein_coding||c.*9750A>G|||||4751|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012714120.2-1|GENE_exon-XM_012714120.2-1|transcript|rna-XM_012714120.2|protein_coding||c.*4965A>G|||||4751|,G|downstream_gene_variant|MODIFIER|LOC101489333|gene-LOC101489333|transcript|XM_004486459.3|protein_coding||c.*3708A>G|||||662|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004486461.3-1|GENE_exon-XM_004486461.3-1|transcript|rna-XM_004486461.3|protein_coding||c.*842T>C|||||457|,G|downstream_gene_variant|MODIFIER|LOC101489333|gene-LOC101489333|transcript|XM_004486460.3|protein_coding||c.*3708A>G|||||731|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004486459.3-1-exon-XM_004486461.3-1|GENE_exon-XM_004486459.3-1-GENE_exon-XM_004486461.3-1|intergenic_region|GENE_exon-XM_004486459.3-1-GENE_exon-XM_004486461.3-1|||n.8136725A>G||||||;BaseQRankSum=-4.007e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=0.873;MLEAC=3;MLEAF=0.750;MQ=43.51;MQRankSum=0.00;QD=15.99;ReadPosRankSum=1.83;SOR=0.685;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",8139972,".","CA","C","0/1","1/1",2254.15,"PASS","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004486460.3-1|GENE_exon-XM_004486460.3-1|transcript|rna-XM_004486460.3|protein_coding||c.-4317delT|||||3979|,C|upstream_gene_variant|MODIFIER|exon-XM_004486459.3-1|GENE_exon-XM_004486459.3-1|transcript|rna-XM_004486459.3|protein_coding||c.-4317delT|||||3910|,C|downstream_gene_variant|MODIFIER|LOC101489333|gene-LOC101489333|transcript|XM_004486459.3|protein_coding||c.*6956delA|||||3910|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101489333|gene-LOC101489333|transcript|XM_004486460.3|protein_coding||c.*6956delA|||||3979|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|exon-XM_004486461.3-1|GENE_exon-XM_004486461.3-1|transcript|rna-XM_004486461.3|protein_coding|6/6|c.1166+100delT||||||,C|non_coding_transcript_variant|MODIFIER|LOC101489863|gene-LOC101489863|transcript|XM_004486461.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=0.674;ClippingRankSum=0.00;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=42.25;MQRankSum=-8.190e-01;QD=28.53;ReadPosRankSum=-7.580e-01;SOR=0.729;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",8297331,".","T","C","0/1","0/0",222.19,"BQB","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_004486519.3-1|GENE_exon-XM_004486519.3-1|transcript|rna-XM_004486519.3|protein_coding|2/2|c.696+1051A>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101510182|gene-LOC101510182|transcript|XM_004486519.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-5.535e+00;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=7.450;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=3.77;ReadPosRankSum=0.472;SOR=1.087;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",8661847,".","C","CTAATGGTGTTTTTCTTATTGTTCGATCCCCTT","0/0","0/1",1128.15,"SB60SNV","AC=1;AF=0.250;AN=4;ANN=CTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|upstream_gene_variant|MODIFIER|exon-XM_027331498.1-1|GENE_exon-XM_027331498.1-1|transcript|rna-XM_027331498.1|protein_coding||c.-3613_-3612insTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|||||3189|,CTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|upstream_gene_variant|MODIFIER|LOC101488223|gene-LOC101488223|transcript|XM_004486527.3|protein_coding||c.-18121_-18120insTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|||||3390|WARNING_TRANSCRIPT_NO_START_CODON,CTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|upstream_gene_variant|MODIFIER|exon-XM_004486527.3-1|GENE_exon-XM_004486527.3-1|transcript|rna-XM_004486527.3|protein_coding||c.-3613_-3612insTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|||||3390|,CTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|upstream_gene_variant|MODIFIER|LOC101488223|gene-LOC101488223|transcript|XM_027331498.1|protein_coding||c.-18121_-18120insTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|||||3189|WARNING_TRANSCRIPT_NO_START_CODON,CTAATGGTGTTTTTCTTATTGTTCGATCCCCTT|intergenic_region|MODIFIER|LOC101499297-exon-XM_027331498.1-1|LOC101499297-GENE_exon-XM_027331498.1-1|intergenic_region|LOC101499297-GENE_exon-XM_027331498.1-1|||n.8661847_8661848insTAATGGTGTTTTTCTTATTGTTCGATCCCCTT||||||;BaseQRankSum=-5.410e-01;ClippingRankSum=0.00;DP=179;ExcessHet=3.0103;FS=74.399;MLEAC=1;MLEAF=0.250;MQ=53.73;MQRankSum=-5.713e+00;QD=15.67;ReadPosRankSum=-7.534e+00;SOR=7.053;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
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["NC_021160.1",24034472,".","T","A","0/0","0/1",25.45,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_027331363.1-1|GENE_exon-XM_027331363.1-1|transcript|rna-XM_027331363.1|protein_coding||c.-3382A>T|||||3227|,A|downstream_gene_variant|MODIFIER|LOC113784997|gene-LOC113784997|transcript|XM_027331363.1|protein_coding||c.*4184T>A|||||3227|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_027331363.1-1-exon-XR_003472953.1-1|GENE_exon-XM_027331363.1-1-GENE_exon-XR_003472953.1-1|intergenic_region|GENE_exon-XM_027331363.1-1-GENE_exon-XR_003472953.1-1|||n.24034472T>A||||||;BaseQRankSum=2.23;ClippingRankSum=0.00;DP=15;ExcessHet=3.0103;FS=13.424;MLEAC=1;MLEAF=0.250;MQ=39.08;MQRankSum=-7.740e-01;QD=2.12;ReadPosRankSum=2.26;SOR=2.202;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",25027047,".","T","A","0/1","0/0",93.87,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC113785263|gene-LOC113785263|transcript|XR_003471403.1|snoRNA||n.-4072T>A|||||3966|,A|upstream_gene_variant|MODIFIER|exon-XR_003471403.1-1|GENE_exon-XR_003471403.1-1|transcript|rna-XR_003471403.1|pseudogene||n.-3966T>A|||||3966|,A|downstream_gene_variant|MODIFIER|LOC105852663|LOC105852663|transcript|gene-LOC105852663|pseudogene||n.*1804A>T|||||1804|,A|intergenic_region|MODIFIER|exon-XM_004488100.3-1-LOC105852663|GENE_exon-XM_004488100.3-1-LOC105852663|intergenic_region|GENE_exon-XM_004488100.3-1-LOC105852663|||n.25027047T>A||||||;BaseQRankSum=-1.778e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.9794;FS=4.038;MLEAC=2;MLEAF=0.500;MQ=58.27;MQRankSum=-6.961e+00;QD=1.88;ReadPosRankSum=-8.070e-01;SOR=1.215;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",26407562,".","T","G","1/1","0/1",599.2,"map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=G|downstream_gene_variant|MODIFIER|exon-XR_003473947.1-1|GENE_exon-XR_003473947.1-1|transcript|rna-XR_003473947.1|pseudogene||n.*3820A>C|||||3820|,G|intergenic_region|MODIFIER|exon-XM_004488150.3-1-exon-XR_003473947.1-1|GENE_exon-XM_004488150.3-1-GENE_exon-XR_003473947.1-1|intergenic_region|GENE_exon-XM_004488150.3-1-GENE_exon-XR_003473947.1-1|||n.26407562T>G||||||;BaseQRankSum=-2.317e+00;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=5.971;MLEAC=4;MLEAF=1.00;MQ=41.04;MQRankSum=3.11;QD=19.97;ReadPosRankSum=-8.340e-01;SOR=3.767;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",29203430,".","G","A","0/1","0/0",17.27,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004488261.3-1-exon-XR_003472558.1-1|GENE_exon-XM_004488261.3-1-GENE_exon-XR_003472558.1-1|intergenic_region|GENE_exon-XM_004488261.3-1-GENE_exon-XR_003472558.1-1|||n.29203430G>A||||||;BaseQRankSum=2.32;ClippingRankSum=0.00;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.07;MQRankSum=-4.661e+00;QD=0.36;ReadPosRankSum=-4.970e-01;SOR=0.504;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",29377403,".","G","C","0/0","0/1",77.32,"map","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101498791|gene-LOC101498791|transcript|XM_004488271.3|protein_coding||c.-4898G>C|||||778|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004488271.3-1|GENE_exon-XM_004488271.3-1|transcript|rna-XM_004488271.3|protein_coding||c.-1024G>C|||||778|,C|upstream_gene_variant|MODIFIER|exon-XM_027333621.1-1|GENE_exon-XM_027333621.1-1|transcript|rna-XM_027333621.1|protein_coding||c.-1024G>C|||||778|,C|upstream_gene_variant|MODIFIER|LOC101498791|gene-LOC101498791|transcript|XM_027333621.1|protein_coding||c.-4898G>C|||||778|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|LOC105852790-exon-XM_004488271.3-1|LOC105852790-GENE_exon-XM_004488271.3-1|intergenic_region|LOC105852790-GENE_exon-XM_004488271.3-1|||n.29377403G>C||||||;BaseQRankSum=0.896;ClippingRankSum=0.00;DP=63;ExcessHet=3.0103;FS=1.561;MLEAC=2;MLEAF=0.500;MQ=47.17;MQRankSum=-2.559e+00;QD=2.49;ReadPosRankSum=-1.699e+00;SOR=1.071;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",29542643,".","G","A","0/0","0/1",62.71,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003471352.1-1-exon-XM_012719589.2-1|GENE_exon-XR_003471352.1-1-GENE_exon-XM_012719589.2-1|intergenic_region|GENE_exon-XR_003471352.1-1-GENE_exon-XM_012719589.2-1|||n.29542643G>A||||||;BaseQRankSum=3.96;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=42.02;MQRankSum=-8.970e-01;QD=3.14;ReadPosRankSum=-7.450e-01;SOR=0.693;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",29877456,".","C","T","0/1","1/1",340.19,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027330507.1-1-exon-XM_004488288.1-1|GENE_exon-XM_027330507.1-1-GENE_exon-XM_004488288.1-1|intergenic_region|GENE_exon-XM_027330507.1-1-GENE_exon-XM_004488288.1-1|||n.29877456C>T||||||;BaseQRankSum=2.66;ClippingRankSum=0.00;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=20.96;MQRankSum=1.56;QD=17.01;ReadPosRankSum=-4.750e-01;SOR=0.941;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",29980498,".","T","A","0/0","0/1",132.87,"mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004488289.1-1-exon-XM_027336818.1-1|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|intergenic_region|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|||n.29980498T>A||||||;BaseQRankSum=-1.105e+00;ClippingRankSum=0.00;DP=63;ExcessHet=3.9794;FS=1.840;MLEAC=2;MLEAF=0.500;MQ=52.07;MQRankSum=-3.750e+00;QD=3.69;ReadPosRankSum=-1.610e-01;SOR=1.051;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",30006471,".","C","G","0/1","0/0",12.44,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004488289.1-1-exon-XM_027336818.1-1|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|intergenic_region|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|||n.30006471C>G||||||;BaseQRankSum=0.487;ClippingRankSum=0.00;DP=102;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.250;MQ=38.85;MQRankSum=-1.340e-01;QD=0.40;ReadPosRankSum=-1.552e+00;SOR=0.086;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",30043429,".","A","G","0/1","1/1",3923.61,"MQ40","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004488289.1-1-exon-XM_027336818.1-1|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|intergenic_region|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|||n.30043429A>G||||||;BaseQRankSum=-2.700e-02;ClippingRankSum=0.00;DP=101;ExcessHet=3.0103;FS=11.276;MLEAC=3;MLEAF=0.750;MQ=30.18;MQRankSum=1.89;QD=27.47;ReadPosRankSum=-8.010e-01;SOR=0.045;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",30055507,".","AG","A","0/0","1/1",137.13,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004488289.1-1-exon-XM_027336818.1-1|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|intergenic_region|GENE_exon-XM_004488289.1-1-GENE_exon-XM_027336818.1-1|||n.30055508delG||||||;DP=27;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=38.34;QD=25.58;SOR=1.179;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",30432234,".","T","C","0/1","1/1",945.04,"map;mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004488313.1-1|GENE_exon-XM_004488313.1-1|transcript|rna-XM_004488313.1|protein_coding||c.-634A>G|||||634|,C|downstream_gene_variant|MODIFIER|LOC101514399|gene-LOC101514399|transcript|XM_004488313.1|protein_coding||c.*1959T>C|||||634|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004488313.1-1-exon-XM_004488301.3-1|GENE_exon-XM_004488313.1-1-GENE_exon-XM_004488301.3-1|intergenic_region|GENE_exon-XM_004488313.1-1-GENE_exon-XM_004488301.3-1|||n.30432234T>C||||||;BaseQRankSum=-1.131e+00;ClippingRankSum=0.00;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=42.60;MQRankSum=5.17;QD=16.58;ReadPosRankSum=-1.042e+00;SOR=0.506;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",30628678,".","C","T","0/1","1/1",1635.2,"MQ40;map;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027336221.1-1-exon-XM_012719663.2-1|GENE_exon-XM_027336221.1-1-GENE_exon-XM_012719663.2-1|intergenic_region|GENE_exon-XM_027336221.1-1-GENE_exon-XM_012719663.2-1|||n.30628678C>T||||||;BaseQRankSum=1.85;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=34.11;MQRankSum=1.86;QD=32.70;ReadPosRankSum=-5.260e-01;SOR=1.292;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",30957002,".","G","A","0/1","0/0",53.23,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003472888.1-1-exon-XM_027336834.1-1|GENE_exon-XR_003472888.1-1-GENE_exon-XM_027336834.1-1|intergenic_region|GENE_exon-XR_003472888.1-1-GENE_exon-XM_027336834.1-1|||n.30957002G>A||||||;BaseQRankSum=2.36;ClippingRankSum=0.00;DP=19;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.250;MQ=42.41;MQRankSum=-1.434e+00;QD=4.84;ReadPosRankSum=-9.100e-02;SOR=2.833;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",31192599,".","TATATATATATATATATATATATATATATATATATATATATAGAATGTGATGTAAAGTTTGCACTCTGTTGTATATAATATATATATATATATATATAAAAAA","T","1/1","0/0",293.38,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012719712.2-1-exon-XM_027334148.1-1|GENE_exon-XM_012719712.2-1-GENE_exon-XM_027334148.1-1|intergenic_region|GENE_exon-XM_012719712.2-1-GENE_exon-XM_027334148.1-1|||n.31192600_31192701del||||||;DP=16;ExcessHet=0.7918;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=57.26;QD=26.67;SOR=1.270;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",31358629,".","C","T","0/0","0/1",139.73,"PASS","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|exon-XR_001144801.2-1|GENE_exon-XR_001144801.2-1|transcript|rna-XR_001144801.2|pseudogene||n.*1726C>T|||||1726|,T|intergenic_region|MODIFIER|exon-XR_001144801.2-1-exon-XM_004488329.3-1|GENE_exon-XR_001144801.2-1-GENE_exon-XM_004488329.3-1|intergenic_region|GENE_exon-XR_001144801.2-1-GENE_exon-XM_004488329.3-1|||n.31358629C>T||||||;BaseQRankSum=0.806;ClippingRankSum=0.00;DP=175;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.250;MQ=45.01;MQRankSum=-2.712e+00;QD=2.79;ReadPosRankSum=0.663;SOR=0.533;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",31774240,".","C","A","0/0","0/1",10.58,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101502180|gene-LOC101502180|transcript|XM_027336858.1|protein_coding||c.*6783C>A|||||1154|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_027336858.1-1|GENE_exon-XM_027336858.1-1|transcript|rna-XM_027336858.1|protein_coding||c.*1154C>A|||||1154|,A|intron_variant|MODIFIER|exon-XM_027336859.1-1|GENE_exon-XM_027336859.1-1|transcript|rna-XM_027336859.1|protein_coding|1/2|c.344-372C>A||||||,A|non_coding_transcript_variant|MODIFIER|LOC113787729|gene-LOC113787729|transcript|XM_027336859.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.48;ClippingRankSum=0.00;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=55.53;MQRankSum=-5.122e+00;QD=0.38;ReadPosRankSum=1.51;SOR=0.332;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",31818662,".","T","A","0/1","0/0",37.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_012719797.2-1-exon-XR_003470999.1-1|GENE_exon-XM_012719797.2-1-GENE_exon-XR_003470999.1-1|intergenic_region|GENE_exon-XM_012719797.2-1-GENE_exon-XR_003470999.1-1|||n.31818662T>A||||||;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=137;ExcessHet=3.0103;FS=9.940;MLEAC=1;MLEAF=0.250;MQ=41.37;MQRankSum=0.575;QD=0.43;ReadPosRankSum=0.371;SOR=2.728;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",31881604,".","A","G","0/1","0/0",36.19,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|LOC113787730-LOC101503118|LOC113787730-LOC101503118|intergenic_region|LOC113787730-LOC101503118|||n.31881604A>G||||||;BaseQRankSum=-1.126e+00;ClippingRankSum=0.00;DP=47;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.250;MQ=54.12;MQRankSum=-3.487e+00;QD=1.57;ReadPosRankSum=0.779;SOR=2.815;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",32039060,".","T","C","0/0","0/1",225.2,"MQ40;map;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|LOC101504104|LOC101504104|transcript|gene-LOC101504104|pseudogene|11/11|n.1369+19162T>C||||||;BaseQRankSum=-2.937e+00;ClippingRankSum=0.00;DP=44;ExcessHet=3.0103;FS=25.092;MLEAC=1;MLEAF=0.250;MQ=34.26;MQRankSum=0.918;QD=11.26;ReadPosRankSum=-3.281e+00;SOR=4.161;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",32368082,".","A","G","0/0","0/1",93.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004488358.3-1-exon-XM_027336888.1-1|GENE_exon-XM_004488358.3-1-GENE_exon-XM_027336888.1-1|intergenic_region|GENE_exon-XM_004488358.3-1-GENE_exon-XM_027336888.1-1|||n.32368082A>G||||||;BaseQRankSum=-3.434e+00;ClippingRankSum=0.00;DP=67;ExcessHet=3.0103;FS=32.750;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=2.82;ReadPosRankSum=-1.702e+00;SOR=3.585;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",32756872,".","G","T","0/1","0/0",209.19,"BQB;map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_012719861.1-1|GENE_exon-XM_012719861.1-1|transcript|rna-XM_012719861.1|protein_coding||c.-4784C>A|||||4784|,T|downstream_gene_variant|MODIFIER|LOC105852960|gene-LOC105852960|transcript|XM_012719861.1|protein_coding||c.*5467G>T|||||4784|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_012719861.1-1-exon-XM_004488361.1-1|GENE_exon-XM_012719861.1-1-GENE_exon-XM_004488361.1-1|intergenic_region|GENE_exon-XM_012719861.1-1-GENE_exon-XM_004488361.1-1|||n.32756872G>T||||||;BaseQRankSum=4.40;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=22.462;MLEAC=1;MLEAF=0.250;MQ=55.59;MQRankSum=-6.287e+00;QD=3.95;ReadPosRankSum=1.89;SOR=4.404;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",32823419,".","C","T","0/1","0/0",257.87,"map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004488361.1-1-exon-XM_004488362.3-1|GENE_exon-XM_004488361.1-1-GENE_exon-XM_004488362.3-1|intergenic_region|GENE_exon-XM_004488361.1-1-GENE_exon-XM_004488362.3-1|||n.32823419C>T||||||;BaseQRankSum=2.84;ClippingRankSum=0.00;DP=142;ExcessHet=3.9794;FS=30.895;MLEAC=2;MLEAF=0.500;MQ=53.76;MQRankSum=-6.482e+00;QD=3.68;ReadPosRankSum=0.329;SOR=4.976;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",32983073,".","C","T","0/0","0/1",268.41,"MQ40;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004488362.3-1-exon-XM_004488364.3-1|GENE_exon-XM_004488362.3-1-GENE_exon-XM_004488364.3-1|intergenic_region|GENE_exon-XM_004488362.3-1-GENE_exon-XM_004488364.3-1|||n.32983073C>T||||||;BaseQRankSum=2.22;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=4.266;MLEAC=1;MLEAF=0.250;MQ=26.27;MQRankSum=0.339;QD=5.71;ReadPosRankSum=0.545;SOR=0.292;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",33413540,".","G","A","0/0","0/1",46.87,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_027336897.1-1|GENE_exon-XM_027336897.1-1|transcript|rna-XM_027336897.1|protein_coding||c.-4696C>T|||||4696|,A|upstream_gene_variant|MODIFIER|exon-XM_004488381.1-1|GENE_exon-XM_004488381.1-1|transcript|rna-XM_004488381.1|protein_coding||c.-3681C>T|||||3681|,A|downstream_gene_variant|MODIFIER|LOC113787750|gene-LOC113787750|transcript|XM_027336897.1|protein_coding||c.*11269G>A|||||4696|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101488812|gene-LOC101488812|transcript|XM_004488381.1|protein_coding||c.*4498G>A|||||3681|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004488381.1-1-exon-XM_027336904.1-1|GENE_exon-XM_004488381.1-1-GENE_exon-XM_027336904.1-1|intergenic_region|GENE_exon-XM_004488381.1-1-GENE_exon-XM_027336904.1-1|||n.33413540G>A||||||;BaseQRankSum=1.67;ClippingRankSum=0.00;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=31.33;MQRankSum=-9.670e-01;QD=4.69;ReadPosRankSum=0.967;SOR=0.412;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021160.1",37813123,".","C","T","0/1","0/0",12.45,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004488499.3-1-exon-XR_189362.3-1|GENE_exon-XM_004488499.3-1-GENE_exon-XR_189362.3-1|intergenic_region|GENE_exon-XM_004488499.3-1-GENE_exon-XR_189362.3-1|||n.37813123C>T||||||;BaseQRankSum=4.87;ClippingRankSum=0.00;DP=139;ExcessHet=3.0103;FS=31.828;MLEAC=1;MLEAF=0.250;MQ=59.35;MQRankSum=-4.303e+00;QD=0.19;ReadPosRankSum=1.67;SOR=4.863;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",37926832,".","G","A","0/1","0/0",27.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004488508.3-1-LOC101514514|GENE_exon-XM_004488508.3-1-LOC101514514|intergenic_region|GENE_exon-XM_004488508.3-1-LOC101514514|||n.37926832G>A||||||;BaseQRankSum=3.39;ClippingRankSum=0.00;DP=121;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.250;MQ=56.33;MQRankSum=-4.029e+00;QD=0.42;ReadPosRankSum=-7.950e-01;SOR=0.368;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",38389308,".","T","C","0/0","0/1",53.19,"QD2","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC113785262|gene-LOC113785262|transcript|XR_003471402.1|snoRNA||n.-1564T>C|||||1461|,C|downstream_gene_variant|MODIFIER|exon-XR_003471402.1-1|GENE_exon-XR_003471402.1-1|transcript|rna-XR_003471402.1|pseudogene||n.*1461A>G|||||1461|,C|intergenic_region|MODIFIER|exon-XM_004488518.3-1-exon-XR_003471402.1-1|GENE_exon-XM_004488518.3-1-GENE_exon-XR_003471402.1-1|intergenic_region|GENE_exon-XM_004488518.3-1-GENE_exon-XR_003471402.1-1|||n.38389308T>C||||||;BaseQRankSum=-1.690e-01;ClippingRankSum=0.00;DP=122;ExcessHet=3.0103;FS=12.950;MLEAC=1;MLEAF=0.250;MQ=57.82;MQRankSum=-8.191e+00;QD=0.69;ReadPosRankSum=2.33;SOR=2.556;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",38580252,".","T","A","0/0","0/1",64.42,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC101506797-LOC101507134|LOC101506797-LOC101507134|intergenic_region|LOC101506797-LOC101507134|||n.38580252T>A||||||;BaseQRankSum=0.369;ClippingRankSum=0.00;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=43.85;MQRankSum=0.063;QD=4.03;ReadPosRankSum=0.740;SOR=0.693;SAL5=1;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",38685236,".","C","T","0/1","0/0",10.69,"QD2;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101507759|LOC101507759|transcript|gene-LOC101507759|pseudogene||n.-1392G>A|||||1392|,T|intergenic_region|MODIFIER|LOC101507759-LOC101493684|LOC101507759-LOC101493684|intergenic_region|LOC101507759-LOC101493684|||n.38685236C>T||||||;BaseQRankSum=2.65;ClippingRankSum=0.00;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.01;MQRankSum=-4.017e+00;QD=0.51;ReadPosRankSum=-8.000e-01;SOR=0.412;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",38971367,".","C","T","0/1","1/1",526.7,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012712079.2-1-LOC105851285|GENE_exon-XM_012712079.2-1-LOC105851285|intergenic_region|GENE_exon-XM_012712079.2-1-LOC105851285|||n.38971367C>T||||||;BaseQRankSum=1.93;ClippingRankSum=0.00;DP=25;ExcessHet=3.0103;FS=4.357;MLEAC=3;MLEAF=0.750;MQ=37.61;MQRankSum=2.97;QD=21.07;ReadPosRankSum=-1.078e+00;SOR=2.833;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",39573812,".","C","T","0/1","0/0",204.87,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027337072.1-1-exon-XM_004488539.3-1|GENE_exon-XM_027337072.1-1-GENE_exon-XM_004488539.3-1|intergenic_region|GENE_exon-XM_027337072.1-1-GENE_exon-XM_004488539.3-1|||n.39573812C>T||||||;BaseQRankSum=0.852;ClippingRankSum=0.00;DP=34;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.11;MQRankSum=-2.076e+00;QD=17.07;ReadPosRankSum=-2.429e+00;SOR=0.368;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",39901357,".","CTGAAACGATTTTCAAAAACGATAGTTAAGTAACCGAGACATTAAGAGATTCCCCATTCTTAATACTCATTTAT","C","0/0","0/1",104.15,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|LOC101488566|gene-LOC101488566|transcript|XM_004488578.1|protein_coding||c.*6212_*6284delTGAAACGATTTTCAAAAACGATAGTTAAGTAACCGAGACATTAAGAGATTCCCCATTCTTAATACTCATTTAT|||||4948|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004488578.1-1|GENE_exon-XM_004488578.1-1|transcript|rna-XM_004488578.1|protein_coding||c.*4948_*5020delTGAAACGATTTTCAAAAACGATAGTTAAGTAACCGAGACATTAAGAGATTCCCCATTCTTAATACTCATTTAT|||||4948|,C|intergenic_region|MODIFIER|exon-XM_004488578.1-1-exon-XR_003471351.1-1|GENE_exon-XM_004488578.1-1-GENE_exon-XR_003471351.1-1|intergenic_region|GENE_exon-XM_004488578.1-1-GENE_exon-XR_003471351.1-1|||n.39901358_39901430delTGAAACGATTTTCAAAAACGATAGTTAAGTAACCGAGACATTAAGAGATTCCCCATTCTTAATACTCATTTAT||||||;BaseQRankSum=1.35;ClippingRankSum=0.00;DP=249;ExcessHet=3.0103;FS=22.581;MLEAC=1;MLEAF=0.250;MQ=34.96;MQRankSum=-1.783e+00;QD=1.53;ReadPosRankSum=0.107;SOR=3.054;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",40077604,".","C","A","0/1","0/0",38.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003471606.1-1-exon-XM_004488553.3-1|GENE_exon-XR_003471606.1-1-GENE_exon-XM_004488553.3-1|intergenic_region|GENE_exon-XR_003471606.1-1-GENE_exon-XM_004488553.3-1|||n.40077604C>A||||||;BaseQRankSum=2.73;ClippingRankSum=0.00;DP=127;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.250;MQ=58.65;MQRankSum=-7.102e+00;QD=0.73;ReadPosRankSum=1.37;SOR=1.300;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",40790022,".","C","T","0/0","0/1",559.19,"map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004488608.2-1-LOC101509992|GENE_exon-XM_004488608.2-1-LOC101509992|intergenic_region|GENE_exon-XM_004488608.2-1-LOC101509992|||n.40790022C>T||||||;BaseQRankSum=0.695;ClippingRankSum=0.00;DP=188;ExcessHet=3.0103;FS=37.382;MLEAC=1;MLEAF=0.250;MQ=54.72;MQRankSum=-5.308e+00;QD=5.59;ReadPosRankSum=-3.200e-01;SOR=2.505;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",40872823,".","C","A","0/1","0/0",11.5,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|non_coding_transcript_exon_variant|MODIFIER|exon-XR_189366.3-1|GENE_exon-XR_189366.3-1|transcript|rna-XR_189366.3|pseudogene|1/1|n.1162G>T||||||,A|non_coding_transcript_variant|MODIFIER|gene-LOC101499524|gene-LOC101499524|transcript|XR_189366.3|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101499524|LOC101499524|transcript|gene-LOC101499524|pseudogene||||||||;BaseQRankSum=3.41;ClippingRankSum=0.00;DP=129;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.250;MQ=62.28;MQRankSum=-2.339e+00;QD=0.21;ReadPosRankSum=1.58;SOR=0.169;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",41089205,".","C","A","0/0","0/1",86.19,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_012712198.1-1|GENE_exon-XM_012712198.1-1|transcript|rna-XM_012712198.1|protein_coding||c.-2665G>T|||||2665|,A|downstream_gene_variant|MODIFIER|LOC105851399|gene-LOC105851399|transcript|XM_012712198.1|protein_coding||c.*3716C>A|||||2665|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_012712198.1-1-exon-XR_003473955.1-1|GENE_exon-XM_012712198.1-1-GENE_exon-XR_003473955.1-1|intergenic_region|GENE_exon-XM_012712198.1-1-GENE_exon-XR_003473955.1-1|||n.41089205C>A||||||;BaseQRankSum=2.71;ClippingRankSum=0.00;DP=113;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.250;MQ=32.47;MQRankSum=-1.163e+00;QD=1.21;ReadPosRankSum=0.022;SOR=0.919;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",41717446,".","C","T","0/0","0/1",56.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101501741|LOC101501741|transcript|gene-LOC101501741|pseudogene||n.-2342G>A|||||2342|,T|intergenic_region|MODIFIER|LOC101501741-exon-XR_003473006.1-1|LOC101501741-GENE_exon-XR_003473006.1-1|intergenic_region|LOC101501741-GENE_exon-XR_003473006.1-1|||n.41717446C>T||||||;BaseQRankSum=3.17;ClippingRankSum=0.00;DP=238;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.250;MQ=50.05;MQRankSum=-1.744e+00;QD=0.42;ReadPosRankSum=-5.200e-01;SOR=0.735;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",42107763,".","C","CTATTATTAT","0/0","1/1",1036.42,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=CTATTATTAT|intergenic_region|MODIFIER|exon-XM_004488693.3-1-exon-XM_004488696.3-1|GENE_exon-XM_004488693.3-1-GENE_exon-XM_004488696.3-1|intergenic_region|GENE_exon-XM_004488693.3-1-GENE_exon-XM_004488696.3-1|||n.42107763_42107764insTATTATTAT||||||;DP=49;ExcessHet=0.7918;FS=6.396;MLEAC=2;MLEAF=0.500;MQ=39.15;QD=29.38;SOR=0.435;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",42387967,".","GA","G","0/1","0/0",64.15,"mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_027337162.1-1|GENE_exon-XM_027337162.1-1|transcript|rna-XM_027337162.1|protein_coding||c.-725delT|||||725|,G|upstream_gene_variant|MODIFIER|LOC113785492|gene-LOC113785492|transcript|XM_027332085.1|protein_coding||c.-3648delA|||||3019|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC113787808|gene-LOC113787808|transcript|XM_027337166.1|protein_coding||c.-10398delA|||||3705|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101509555|gene-LOC101509555|transcript|XM_004488714.3|protein_coding||c.*2084delA|||||1408|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004488714.3-1|GENE_exon-XM_004488714.3-1|transcript|rna-XM_004488714.3|protein_coding||c.*1581delA|||||1408|,G|downstream_gene_variant|MODIFIER|LOC113787807|gene-LOC113787807|transcript|XM_027337162.1|protein_coding||c.*1087delA|||||725|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_027332085.1-1|GENE_exon-XM_027332085.1-1|transcript|rna-XM_027332085.1|protein_coding||c.*3137delT|||||3019|,G|downstream_gene_variant|MODIFIER|exon-XM_027337166.1-1|GENE_exon-XM_027337166.1-1|transcript|rna-XM_027337166.1|protein_coding||c.*3705delT|||||3705|,G|intergenic_region|MODIFIER|exon-XM_027337162.1-1-exon-XM_027332085.1-1|GENE_exon-XM_027337162.1-1-GENE_exon-XM_027332085.1-1|intergenic_region|GENE_exon-XM_027337162.1-1-GENE_exon-XM_027332085.1-1|||n.42387968delA||||||;BaseQRankSum=1.75;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=5.348;MLEAC=1;MLEAF=0.250;MQ=59.26;MQRankSum=0.00;QD=2.92;ReadPosRankSum=2.05;SOR=0.105;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",42687491,".","T","G","0/0","0/1",25.26,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_001143265.2-1-exon-XM_004488729.3-1|GENE_exon-XR_001143265.2-1-GENE_exon-XM_004488729.3-1|intergenic_region|GENE_exon-XR_001143265.2-1-GENE_exon-XM_004488729.3-1|||n.42687491T>G||||||;BaseQRankSum=-1.036e+00;ClippingRankSum=0.00;DP=19;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.250;MQ=41.29;MQRankSum=-1.645e+00;QD=5.05;ReadPosRankSum=-1.645e+00;SOR=2.833;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",43331076,".","C","T","0/0","0/1",64.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=T|non_coding_transcript_exon_variant|MODIFIER|exon-XR_003471346.1-1|GENE_exon-XR_003471346.1-1|transcript|rna-XR_003471346.1|pseudogene|1/1|n.37C>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC113785190|gene-LOC113785190|transcript|XR_003471346.1|snoRNA||||||||;BaseQRankSum=-9.330e-01;ClippingRankSum=0.00;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=49.03;MQRankSum=-2.887e+00;QD=2.01;ReadPosRankSum=0.081;SOR=0.509;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",43440840,".","T","C","1/1","0/1",197.18,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XR_003473186.1-1-exon-XM_004488750.2-1|GENE_exon-XR_003473186.1-1-GENE_exon-XM_004488750.2-1|intergenic_region|GENE_exon-XR_003473186.1-1-GENE_exon-XM_004488750.2-1|||n.43440840T>C||||||;BaseQRankSum=-8.420e-01;ClippingRankSum=0.00;DP=18;ExcessHet=3.0103;FS=10.086;MLEAC=3;MLEAF=0.750;MQ=39.37;MQRankSum=1.53;QD=10.95;ReadPosRankSum=-3.190e-01;SOR=1.927;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",43689946,".","G","A","0/1","0/0",203.2,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004488773.3-1|GENE_exon-XM_004488773.3-1|transcript|rna-XM_004488773.3|protein_coding||c.-3689C>T|||||3437|,A|downstream_gene_variant|MODIFIER|LOC101499742|gene-LOC101499742|transcript|XM_004488773.3|protein_coding||c.*7370G>A|||||3437|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004488773.3-1-exon-XM_004488774.3-1|GENE_exon-XM_004488773.3-1-GENE_exon-XM_004488774.3-1|intergenic_region|GENE_exon-XM_004488773.3-1-GENE_exon-XM_004488774.3-1|||n.43689946G>A||||||;BaseQRankSum=3.18;ClippingRankSum=0.00;DP=126;ExcessHet=3.0103;FS=3.065;MLEAC=1;MLEAF=0.250;MQ=57.69;MQRankSum=-6.259e+00;QD=2.94;ReadPosRankSum=-9.380e-01;SOR=1.455;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",44120303,".","T","C","1/1","0/1",436.4,"MQ40;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|LOC101507337-exon-XR_003471407.1-1|gene-LOC101507337-GENE_exon-XR_003471407.1-1|intergenic_region|gene-LOC101507337-GENE_exon-XR_003471407.1-1|||n.44120303T>C||||||;BaseQRankSum=0.398;ClippingRankSum=0.00;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=39.74;MQRankSum=-6.600e-01;QD=18.97;ReadPosRankSum=0.398;SOR=0.990;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",44264920,".","T","G","0/1","1/1",703.22,"MQ40;map;mrd30","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_012712488.2-1-exon-XM_004488830.2-1|GENE_exon-XM_012712488.2-1-GENE_exon-XM_004488830.2-1|intergenic_region|GENE_exon-XM_012712488.2-1-GENE_exon-XM_004488830.2-1|||n.44264920T>G||||||;BaseQRankSum=-1.490e+00;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=28.445;MLEAC=3;MLEAF=0.750;MQ=38.92;MQRankSum=4.11;QD=14.35;ReadPosRankSum=0.084;SOR=4.977;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",44428380,".","G","T","0/0","0/1",115.87,"MQ40;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004488831.3-1-exon-XM_004488832.3-1|GENE_exon-XM_004488831.3-1-GENE_exon-XM_004488832.3-1|intergenic_region|GENE_exon-XM_004488831.3-1-GENE_exon-XM_004488832.3-1|||n.44428380G>T||||||;BaseQRankSum=1.57;ClippingRankSum=0.00;DP=39;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=29.43;MQRankSum=-1.075e+00;QD=4.83;ReadPosRankSum=1.85;SOR=0.941;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",44584105,".","A","ATGTAACTC","0/1","0/0",119.15,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=ATGTAACTC|upstream_gene_variant|MODIFIER|exon-XM_004488837.3-1|GENE_exon-XM_004488837.3-1|transcript|rna-XM_004488837.3|protein_coding||c.-3233_-3232insGAGTTACA|||||2862|,ATGTAACTC|downstream_gene_variant|MODIFIER|LOC101496593|gene-LOC101496593|transcript|XM_004488837.3|protein_coding||c.*9078_*9079insTGTAACTC|||||2862|WARNING_TRANSCRIPT_NO_START_CODON,ATGTAACTC|intergenic_region|MODIFIER|exon-XM_004488837.3-1-exon-XM_004488845.1-1|GENE_exon-XM_004488837.3-1-GENE_exon-XM_004488845.1-1|intergenic_region|GENE_exon-XM_004488837.3-1-GENE_exon-XM_004488845.1-1|||n.44584105_44584106insTGTAACTC||||||;BaseQRankSum=1.58;ClippingRankSum=0.00;DP=34;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.250;MQ=40.55;MQRankSum=0.608;QD=17.02;ReadPosRankSum=0.328;SOR=1.981;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021160.1",44921246,".","C","T","0/1","0/0",144.41,"BQB","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027335963.1-1|GENE_exon-XM_027335963.1-1|transcript|rna-XM_027335963.1|protein_coding||c.-5302G>A|||||2656|,T|upstream_gene_variant|MODIFIER|exon-XM_027335959.1-1|GENE_exon-XM_027335959.1-1|transcript|rna-XM_027335959.1|protein_coding||c.-5302G>A|||||2655|,T|upstream_gene_variant|MODIFIER|exon-XM_027335961.1-1|GENE_exon-XM_027335961.1-1|transcript|rna-XM_027335961.1|protein_coding||c.-5302G>A|||||2655|,T|downstream_gene_variant|MODIFIER|LOC105851516|gene-LOC105851516|transcript|XM_027335959.1|protein_coding||c.*6222C>T|||||2655|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC105851516|gene-LOC105851516|transcript|XM_027335963.1|protein_coding||c.*6915C>T|||||2656|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC105851516|gene-LOC105851516|transcript|XM_027335961.1|protein_coding||c.*6222C>T|||||2655|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|LOC105851516-exon-XM_027337233.1-1|gene-LOC105851516-GENE_exon-XM_027337233.1-1|intergenic_region|gene-LOC105851516-GENE_exon-XM_027337233.1-1|||n.44921246C>T||||||;BaseQRankSum=4.48;ClippingRankSum=0.00;DP=91;ExcessHet=3.0103;FS=11.063;MLEAC=1;MLEAF=0.250;MQ=47.40;MQRankSum=-4.540e+00;QD=3.28;ReadPosRankSum=-3.469e+00;SOR=3.258;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",45142994,".","C","G,A","1/2","0/1",10582.19,"MQ40","AC=2,1;AF=0.500,0.250;AN=4;ANN=G|intron_variant|MODIFIER|LOC113788012|LOC113788012|transcript|gene-LOC113788012|pseudogene|1/1|n.110-12873G>C||||||,A|intron_variant|MODIFIER|LOC113788012|LOC113788012|transcript|gene-LOC113788012|pseudogene|1/1|n.110-12873G>T||||||;BaseQRankSum=2.99;ClippingRankSum=0.00;DP=408;ExcessHet=3.0103;FS=5.118;MLEAC=2,1;MLEAF=0.500,0.250;MQ=32.95;MQRankSum=-7.823e+00;QD=26.79;ReadPosRankSum=-1.638e+00;SOR=0.463;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",45298192,".","G","T","0/0","0/1",162.04,"BQB","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012712508.1-1-LOC101513849|GENE_exon-XM_012712508.1-1-LOC101513849|intergenic_region|GENE_exon-XM_012712508.1-1-LOC101513849|||n.45298192G>T||||||;BaseQRankSum=4.53;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=40.013;MLEAC=1;MLEAF=0.250;MQ=55.49;MQRankSum=-4.854e+00;QD=2.84;ReadPosRankSum=0.223;SOR=3.897;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021160.1",45846948,".","C","T","0/0","0/1",71.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012712521.2-1-exon-XM_004488899.1-1|GENE_exon-XM_012712521.2-1-GENE_exon-XM_004488899.1-1|intergenic_region|GENE_exon-XM_012712521.2-1-GENE_exon-XM_004488899.1-1|||n.45846948C>T||||||;BaseQRankSum=4.03;ClippingRankSum=0.00;DP=137;ExcessHet=3.0103;FS=12.582;MLEAC=1;MLEAF=0.250;MQ=58.23;MQRankSum=-7.910e+00;QD=1.11;ReadPosRankSum=0.274;SOR=3.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021160.1",46188219,".","T","G","0/1","0/0",21.33,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC105851525|gene-LOC105851525|transcript|XM_027336036.1|protein_coding||c.-4857T>G|||||3855|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_027336036.1-1|GENE_exon-XM_027336036.1-1|transcript|rna-XM_027336036.1|protein_coding||c.-3885T>G|||||3855|,G|upstream_gene_variant|MODIFIER|exon-XM_027336038.1-1|GENE_exon-XM_027336038.1-1|transcript|rna-XM_027336038.1|protein_coding||c.-3885T>G|||||3855|,G|upstream_gene_variant|MODIFIER|LOC113788019|gene-LOC113788019|transcript|XM_027337296.1|protein_coding||c.-6161T>G|||||4997|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_027337296.1-1|GENE_exon-XM_027337296.1-1|transcript|rna-XM_027337296.1|protein_coding||c.-4997T>G|||||4997|,G|upstream_gene_variant|MODIFIER|LOC105851525|gene-LOC105851525|transcript|XM_027336038.1|protein_coding||c.-4857T>G|||||3855|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_027333251.1-1-exon-XM_027336036.1-1|GENE_exon-XM_027333251.1-1-GENE_exon-XM_027336036.1-1|intergenic_region|GENE_exon-XM_027333251.1-1-GENE_exon-XM_027336036.1-1|||n.46188219T>G||||||;BaseQRankSum=-4.641e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=5.067;MLEAC=1;MLEAF=0.250;MQ=58.55;MQRankSum=-1.492e+00;QD=0.36;ReadPosRankSum=-1.973e+00;SOR=1.567;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021160.1",46413754,".","T","C","0/1","0/0",327.87,"map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|LOC101501118-exon-XM_004488894.3-1|LOC101501118-GENE_exon-XM_004488894.3-1|intergenic_region|LOC101501118-GENE_exon-XM_004488894.3-1|||n.46413754T>C||||||;BaseQRankSum=-3.195e+00;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=9.249;MLEAC=2;MLEAF=0.500;MQ=48.21;MQRankSum=-2.308e+00;QD=21.86;ReadPosRankSum=-3.782e+00;SOR=2.541;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021160.1",47157846,".","T","A","0/1","0/0",72.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC101513977-exon-XM_004488942.3-1|gene-LOC101513977-GENE_exon-XM_004488942.3-1|intergenic_region|gene-LOC101513977-GENE_exon-XM_004488942.3-1|||n.47157846T>A||||||;BaseQRankSum=0.579;ClippingRankSum=0.00;DP=54;ExcessHet=3.0103;FS=29.985;MLEAC=1;MLEAF=0.250;MQ=56.43;MQRankSum=-4.943e+00;QD=2.78;ReadPosRankSum=-3.206e+00;SOR=3.220;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021161.1",449,".","G","A","0/0","0/1",401.87,"BQB","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004489033.3-1|GENE_exon-XM_004489033.3-1|intergenic_region|GENE_exon-XM_004489033.3-1|||n.449G>A||||||;BaseQRankSum=4.31;ClippingRankSum=0.00;DP=113;ExcessHet=3.9794;FS=6.959;MLEAC=2;MLEAF=0.500;MQ=53.51;MQRankSum=-1.695e+00;QD=7.73;ReadPosRankSum=0.254;SOR=0.978;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",770013,".","C","T","0/0","0/1",37.21,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004489072.3-1-exon-XM_004489073.2-1|GENE_exon-XM_004489072.3-1-GENE_exon-XM_004489073.2-1|intergenic_region|GENE_exon-XM_004489072.3-1-GENE_exon-XM_004489073.2-1|||n.770013C>T||||||;BaseQRankSum=0.792;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.250;MQ=47.95;MQRankSum=-2.515e+00;QD=4.13;ReadPosRankSum=1.28;SOR=2.795;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",1281335,".","A","T","0/1","1/1",747.2,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012712567.2-1-exon-XM_004489106.3-1|GENE_exon-XM_012712567.2-1-GENE_exon-XM_004489106.3-1|intergenic_region|GENE_exon-XM_012712567.2-1-GENE_exon-XM_004489106.3-1|||n.1281335A>T||||||;BaseQRankSum=1.60;ClippingRankSum=0.00;DP=20;ExcessHet=3.0103;FS=10.000;MLEAC=3;MLEAF=0.750;MQ=21.34;MQRankSum=1.28;QD=30.90;ReadPosRankSum=-1.370e-01;SOR=5.892;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",1545240,".","G","A","1/1","0/1",1199.19,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004489123.2-1-exon-XR_001143291.2-1|GENE_exon-XM_004489123.2-1-GENE_exon-XR_001143291.2-1|intergenic_region|GENE_exon-XM_004489123.2-1-GENE_exon-XR_001143291.2-1|||n.1545240G>A||||||;BaseQRankSum=2.77;ClippingRankSum=0.00;DP=34;ExcessHet=3.0103;FS=12.049;MLEAC=3;MLEAF=0.750;MQ=37.70;MQRankSum=0.840;QD=26.43;ReadPosRankSum=-4.240e-01;SOR=4.479;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",2169892,".","A","G","0/1","0/0",36.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004489215.3-1-exon-XM_004489216.3-1|GENE_exon-XM_004489215.3-1-GENE_exon-XM_004489216.3-1|intergenic_region|GENE_exon-XM_004489215.3-1-GENE_exon-XM_004489216.3-1|||n.2169892A>G||||||;BaseQRankSum=-5.820e+00;ClippingRankSum=0.00;DP=368;ExcessHet=3.0103;FS=20.755;MLEAC=1;MLEAF=0.250;MQ=48.95;MQRankSum=0.456;QD=0.19;ReadPosRankSum=-8.360e-01;SOR=2.994;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",4143500,".","C","T","0/0","0/1",465.19,"BQB","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027331828.1-1-exon-XM_027331797.1-1|GENE_exon-XM_027331828.1-1-GENE_exon-XM_027331797.1-1|intergenic_region|GENE_exon-XM_027331828.1-1-GENE_exon-XM_027331797.1-1|||n.4143500C>T||||||;BaseQRankSum=4.29;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=5.623;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=8.61;ReadPosRankSum=1.92;SOR=0.674;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",4282415,".","TA","T","0/1","0/0",33.69,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|LOC101496703-exon-XM_004489446.3-1|LOC101496703-GENE_exon-XM_004489446.3-1|intergenic_region|LOC101496703-GENE_exon-XM_004489446.3-1|||n.4282416delA||||||;BaseQRankSum=0.412;ClippingRankSum=0.00;DP=129;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.250;MQ=54.60;MQRankSum=-1.405e+00;QD=0.52;ReadPosRankSum=2.25;SOR=0.476;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",4670916,".","AG","A","0/0","0/1",54.15,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027331731.1-1-exon-XM_004489466.3-1|GENE_exon-XM_027331731.1-1-GENE_exon-XM_004489466.3-1|intergenic_region|GENE_exon-XM_027331731.1-1-GENE_exon-XM_004489466.3-1|||n.4670917delG||||||;BaseQRankSum=-4.740e-01;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=57.77;MQRankSum=-6.355e+00;QD=1.29;ReadPosRankSum=-1.993e+00;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",5169707,".","G","A","0/0","1/1",1423.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004489496.3-1|GENE_exon-XM_004489496.3-1|transcript|rna-XM_004489496.3|protein_coding|4/10|c.544-40C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488572|gene-LOC101488572|transcript|XM_004489496.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.13;SOR=0.726;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",5357862,".","C","G","0/0","1/1",1394.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC105851564|gene-LOC105851564|transcript|XM_012712695.2|protein_coding||c.-4151C>G|||||293|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_012712695.2-1|GENE_exon-XM_012712695.2-1|transcript|rna-XM_012712695.2|protein_coding||c.-691C>G|||||293|,G|intergenic_region|MODIFIER|exon-XM_004489522.3-1-exon-XM_012712695.2-1|GENE_exon-XM_004489522.3-1-GENE_exon-XM_012712695.2-1|intergenic_region|GENE_exon-XM_004489522.3-1-GENE_exon-XM_012712695.2-1|||n.5357862C>G||||||;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.97;QD=24.04;SOR=0.914;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",5531737,".","G","A","0/0","0/1",154.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027331838.1-1-exon-XM_004489541.3-1|GENE_exon-XM_027331838.1-1-GENE_exon-XM_004489541.3-1|intergenic_region|GENE_exon-XM_027331838.1-1-GENE_exon-XM_004489541.3-1|||n.5531737G>A||||||;BaseQRankSum=-5.100e-02;ClippingRankSum=0.00;DP=54;ExcessHet=3.0103;FS=7.384;MLEAC=1;MLEAF=0.250;MQ=53.96;MQRankSum=2.41;QD=7.34;ReadPosRankSum=-2.189e+00;SOR=2.276;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",5994105,".","A","AAT","0/0","1/1",1571.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AAT|intergenic_region|MODIFIER|exon-XM_004489608.3-1-exon-XM_004489609.2-1|GENE_exon-XM_004489608.3-1-GENE_exon-XM_004489609.2-1|intergenic_region|GENE_exon-XM_004489608.3-1-GENE_exon-XM_004489609.2-1|||n.5994105_5994106insAT||||||;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=34.92;SOR=0.829;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",6328627,".","T","C","0/0","0/1",142.37,"BQB;map","AC=1;AF=0.250;AN=4;ANN=C|missense_variant|MODERATE|exon-XM_012712719.1-1|GENE_exon-XM_012712719.1-1|transcript|rna-XM_012712719.1|protein_coding|1/1|c.1172T>C|p.Leu391Pro|1172/1668|1172/1668|391/555||,C|upstream_gene_variant|MODIFIER|LOC101506364|LOC101506364|transcript|gene-LOC101506364|pseudogene||n.-4039T>C|||||4039|,C|non_coding_transcript_variant|MODIFIER|LOC105851568|gene-LOC105851568|transcript|XM_012712719.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-4.564e+00;ClippingRankSum=0.00;DP=136;ExcessHet=3.0103;FS=33.997;MLEAC=1;MLEAF=0.250;MQ=57.18;MQRankSum=-6.779e+00;QD=2.09;ReadPosRankSum=0.460;SOR=4.974;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",6505029,".","A","G","0/0","0/1",303.21,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC113785472|LOC113785472|transcript|gene-LOC113785472|pseudogene||n.*1105A>G|||||1105|,G|intergenic_region|MODIFIER|LOC113785472-exon-XM_027331866.1-1|LOC113785472-GENE_exon-XM_027331866.1-1|intergenic_region|LOC113785472-GENE_exon-XM_027331866.1-1|||n.6505029A>G||||||;BaseQRankSum=-1.753e+00;ClippingRankSum=0.00;DP=52;ExcessHet=3.0103;FS=14.857;MLEAC=1;MLEAF=0.250;MQ=62.50;MQRankSum=-2.537e+00;QD=12.63;ReadPosRankSum=0.776;SOR=1.439;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",6637112,".","T","G","1/1","0/0",1096.42,"map","AC=2;AF=0.500;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC113785473|gene-LOC113785473|transcript|XM_027332045.1|protein_coding||c.*32061T>G|||||474|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_027332045.1-1|GENE_exon-XM_027332045.1-1|transcript|rna-XM_027332045.1|protein_coding||c.*474T>G|||||474|,G|intergenic_region|MODIFIER|exon-XM_027332045.1-1-exon-XR_003471651.1-1|GENE_exon-XM_027332045.1-1-GENE_exon-XR_003471651.1-1|intergenic_region|GENE_exon-XM_027332045.1-1-GENE_exon-XR_003471651.1-1|||n.6637112T>G||||||;DP=81;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.94;QD=22.84;SOR=0.963;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",6782789,".","T","G","0/0","0/1",51.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027332219.1-1-LOC113785408|GENE_exon-XM_027332219.1-1-LOC113785408|intergenic_region|GENE_exon-XM_027332219.1-1-LOC113785408|||n.6782789T>G||||||;BaseQRankSum=-3.130e+00;ClippingRankSum=0.00;DP=165;ExcessHet=3.0103;FS=5.386;MLEAC=1;MLEAF=0.250;MQ=54.94;MQRankSum=-2.031e+00;QD=0.67;ReadPosRankSum=1.64;SOR=0.263;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",7038548,".","T","C","0/0","0/1",72.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|exon-XM_012712721.2-1|GENE_exon-XM_012712721.2-1|transcript|rna-XM_012712721.2|protein_coding||c.*4800T>C|||||4448|,C|downstream_gene_variant|MODIFIER|exon-XM_012712723.2-1|GENE_exon-XM_012712723.2-1|transcript|rna-XM_012712723.2|protein_coding||c.*4800T>C|||||4448|,C|downstream_gene_variant|MODIFIER|exon-XM_012712722.2-1|GENE_exon-XM_012712722.2-1|transcript|rna-XM_012712722.2|protein_coding||c.*4800T>C|||||4448|,C|downstream_gene_variant|MODIFIER|LOC101490865|gene-LOC101490865|transcript|NM_001279154.1|protein_coding||c.*11782T>C|||||4504|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-NM_001279154.1-1|GENE_exon-NM_001279154.1-1|transcript|rna-NM_001279154.1|protein_coding||c.*4800T>C|||||4504|,C|downstream_gene_variant|MODIFIER|LOC101490865|gene-LOC101490865|transcript|XM_012712721.2|protein_coding||c.*12799T>C|||||4448|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101490865|gene-LOC101490865|transcript|XM_012712723.2|protein_coding||c.*12799T>C|||||4448|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101490865|gene-LOC101490865|transcript|XM_012712722.2|protein_coding||c.*12795T>C|||||4448|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_012712721.2-1-exon-XM_004489675.3-1|GENE_exon-XM_012712721.2-1-GENE_exon-XM_004489675.3-1|intergenic_region|GENE_exon-XM_012712721.2-1-GENE_exon-XM_004489675.3-1|||n.7038548T>C||||||;BaseQRankSum=-1.387e+00;ClippingRankSum=0.00;DP=47;ExcessHet=3.0103;FS=22.570;MLEAC=1;MLEAF=0.250;MQ=55.91;MQRankSum=-4.820e+00;QD=2.89;ReadPosRankSum=0.431;SOR=3.222;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",7249078,".","G","T","0/1","0/0",72.87,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004489697.1-1-exon-XM_027332155.1-1|GENE_exon-XM_004489697.1-1-GENE_exon-XM_027332155.1-1|intergenic_region|GENE_exon-XM_004489697.1-1-GENE_exon-XM_027332155.1-1|||n.7249078G>T||||||;BaseQRankSum=0.305;ClippingRankSum=0.00;DP=62;ExcessHet=3.9794;FS=2.817;MLEAC=2;MLEAF=0.500;MQ=58.10;MQRankSum=-9.980e-01;QD=6.07;ReadPosRankSum=-1.029e+00;SOR=0.136;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021161.1",8162788,".","C","G","0/1","0/0",66.23,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004489746.3-1|GENE_exon-XM_004489746.3-1|transcript|rna-XM_004489746.3|protein_coding||c.-4041G>C|||||3909|,G|downstream_gene_variant|MODIFIER|LOC101513224|gene-LOC101513224|transcript|XM_004489746.3|protein_coding||c.*7607C>G|||||3909|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004489746.3-1-exon-XM_004489747.3-1|GENE_exon-XM_004489746.3-1-GENE_exon-XM_004489747.3-1|intergenic_region|GENE_exon-XM_004489746.3-1-GENE_exon-XM_004489747.3-1|||n.8162788C>G||||||;BaseQRankSum=2.35;ClippingRankSum=0.00;DP=22;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.250;MQ=24.05;MQRankSum=2.68;QD=5.09;ReadPosRankSum=0.00;SOR=1.015;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",8437854,".","A","T","0/1","0/0",52.19,"QD2","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101500282|gene-LOC101500282|transcript|XM_004489784.1|protein_coding||c.-2777A>T|||||2210|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004489784.1-1|GENE_exon-XM_004489784.1-1|transcript|rna-XM_004489784.1|protein_coding||c.-2210A>T|||||2210|,T|downstream_gene_variant|MODIFIER|LOC113785479|gene-LOC113785479|transcript|XM_027332050.1|protein_coding||c.*3859A>T|||||3261|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_027332050.1-1|GENE_exon-XM_027332050.1-1|transcript|rna-XM_027332050.1|protein_coding||c.*3280A>T|||||3261|,T|intergenic_region|MODIFIER|exon-XM_027332050.1-1-exon-XM_004489784.1-1|GENE_exon-XM_027332050.1-1-GENE_exon-XM_004489784.1-1|intergenic_region|GENE_exon-XM_027332050.1-1-GENE_exon-XM_004489784.1-1|||n.8437854A>T||||||;BaseQRankSum=1.39;ClippingRankSum=0.00;DP=101;ExcessHet=3.0103;FS=23.302;MLEAC=1;MLEAF=0.250;MQ=56.89;MQRankSum=-7.522e+00;QD=0.90;ReadPosRankSum=-1.009e+00;SOR=4.402;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
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["NC_021161.1",9779867,".","A","T","0/1","0/0",204.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027331964.1-1-exon-XM_012712794.1-1|GENE_exon-XM_027331964.1-1-GENE_exon-XM_012712794.1-1|intergenic_region|GENE_exon-XM_027331964.1-1-GENE_exon-XM_012712794.1-1|||n.9779867A>T||||||;BaseQRankSum=-2.470e+00;ClippingRankSum=0.00;DP=114;ExcessHet=3.0103;FS=7.241;MLEAC=1;MLEAF=0.250;MQ=58.02;MQRankSum=-4.958e+00;QD=2.52;ReadPosRankSum=-6.770e-01;SOR=1.586;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",10211153,".","AATAT","A","0/0","1/1",1190.38,"mrd30","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101508092|gene-LOC101508092|transcript|XM_012712799.2|protein_coding||c.-6093_-6090delATAT|||||3718|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_012712799.2-1|GENE_exon-XM_012712799.2-1|transcript|rna-XM_012712799.2|protein_coding||c.-4027_-4024delATAT|||||3718|,A|intergenic_region|MODIFIER|exon-XM_004489881.1-1-exon-XM_012712799.2-1|GENE_exon-XM_004489881.1-1-GENE_exon-XM_012712799.2-1|intergenic_region|GENE_exon-XM_004489881.1-1-GENE_exon-XM_012712799.2-1|||n.10211154_10211157delATAT||||||;DP=60;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.39;QD=31.71;SOR=2.147;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",10373779,".","TTA","T","0/0","1/1",990.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101514526|gene-LOC101514526|transcript|XM_004489897.3|protein_coding||c.-4858_-4857delTA|||||397|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004489897.3-1|GENE_exon-XM_004489897.3-1|transcript|rna-XM_004489897.3|protein_coding||c.-1003_-1002delTA|||||397|,T|upstream_gene_variant|MODIFIER|exon-XM_027332194.1-1|GENE_exon-XM_027332194.1-1|transcript|rna-XM_027332194.1|protein_coding||c.-1003_-1002delTA|||||600|,T|upstream_gene_variant|MODIFIER|LOC101514526|gene-LOC101514526|transcript|XM_027332194.1|protein_coding||c.-4858_-4857delTA|||||600|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027331680.1-1-exon-XM_004489897.3-1|GENE_exon-XM_027331680.1-1-GENE_exon-XM_004489897.3-1|intergenic_region|GENE_exon-XM_027331680.1-1-GENE_exon-XM_004489897.3-1|||n.10373780_10373781delTA||||||;BaseQRankSum=1.74;ClippingRankSum=0.00;DP=82;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=28.30;ReadPosRankSum=-2.130e-01;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",10495681,".","T","G","0/0","1/1",691.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|downstream_gene_variant|MODIFIER|exon-XR_001143332.2-1|GENE_exon-XR_001143332.2-1|transcript|rna-XR_001143332.2|pseudogene||n.*830A>C|||||830|,G|intergenic_region|MODIFIER|exon-XM_004489903.3-1-exon-XR_001143332.2-1|GENE_exon-XM_004489903.3-1-GENE_exon-XR_001143332.2-1|intergenic_region|GENE_exon-XM_004489903.3-1-GENE_exon-XR_001143332.2-1|||n.10495681T>G||||||;DP=70;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.84;QD=22.30;SOR=1.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",10622958,".","T","TTTA","0/0","1/1",1950.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TTTA|intergenic_region|MODIFIER|exon-XM_004489910.3-1-exon-XM_004489911.3-1|GENE_exon-XM_004489910.3-1-GENE_exon-XM_004489911.3-1|intergenic_region|GENE_exon-XM_004489910.3-1-GENE_exon-XM_004489911.3-1|||n.10622958_10622959insTTA||||||;DP=84;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.39;QD=31.91;SOR=1.154;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",10851224,".","A","G","1/1","0/1",348.43,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004489927.1-1-exon-XM_027331895.1-1|GENE_exon-XM_004489927.1-1-GENE_exon-XM_027331895.1-1|intergenic_region|GENE_exon-XM_004489927.1-1-GENE_exon-XM_027331895.1-1|||n.10851224A>G||||||;BaseQRankSum=-1.625e+00;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=10.212;MLEAC=3;MLEAF=0.750;MQ=33.55;MQRankSum=2.37;QD=16.59;ReadPosRankSum=1.14;SOR=5.994;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",10954501,".","C","T","0/1","0/0",24.23,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004489914.3-1-exon-XM_004489917.3-1|GENE_exon-XM_004489914.3-1-GENE_exon-XM_004489917.3-1|intergenic_region|GENE_exon-XM_004489914.3-1-GENE_exon-XM_004489917.3-1|||n.10954501C>T||||||;BaseQRankSum=2.82;ClippingRankSum=0.00;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.96;MQRankSum=-7.012e+00;QD=0.43;ReadPosRankSum=0.661;SOR=0.790;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",11193196,".","C","T","0/0","0/1",143.87,"map","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|LOC101502506|gene-LOC101502506|transcript|XM_004489937.1|protein_coding||c.*4511C>T|||||3312|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004489937.1-1|GENE_exon-XM_004489937.1-1|transcript|rna-XM_004489937.1|protein_coding||c.*3312C>T|||||3312|,T|intergenic_region|MODIFIER|exon-XM_004489937.1-1-LOC101500284|GENE_exon-XM_004489937.1-1-LOC101500284|intergenic_region|GENE_exon-XM_004489937.1-1-LOC101500284|||n.11193196C>T||||||;BaseQRankSum=3.76;ClippingRankSum=0.00;DP=95;ExcessHet=3.9794;FS=3.108;MLEAC=2;MLEAF=0.500;MQ=46.78;MQRankSum=-3.658e+00;QD=3.27;ReadPosRankSum=1.25;SOR=0.260;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",11363922,".","TGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC","T","1/1","0/1",821.15,"mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|downstream_gene_variant|MODIFIER|exon-XM_004489935.3-1|GENE_exon-XM_004489935.3-1|transcript|rna-XM_004489935.3|protein_coding||c.*3699_*3748delGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC|||||3048|,T|downstream_gene_variant|MODIFIER|LOC101501755|gene-LOC101501755|transcript|XM_004489934.3|protein_coding||c.*12205_*12254delGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC|||||3048|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004489934.3-1|GENE_exon-XM_004489934.3-1|transcript|rna-XM_004489934.3|protein_coding||c.*3699_*3748delGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC|||||3048|,T|downstream_gene_variant|MODIFIER|exon-XM_004489936.3-1|GENE_exon-XM_004489936.3-1|transcript|rna-XM_004489936.3|protein_coding||c.*3699_*3748delGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC|||||3048|,T|downstream_gene_variant|MODIFIER|LOC101501755|gene-LOC101501755|transcript|XM_004489935.3|protein_coding||c.*12219_*12268delGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC|||||3048|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101501755|gene-LOC101501755|transcript|XM_004489936.3|protein_coding||c.*12204_*12253delGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC|||||3048|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004489935.3-1-exon-XM_004489938.2-1|GENE_exon-XM_004489935.3-1-GENE_exon-XM_004489938.2-1|intergenic_region|GENE_exon-XM_004489935.3-1-GENE_exon-XM_004489938.2-1|||n.11363923_11363972delGGTCTTCTTCTCGCGGCCTCATTCCGGTCTTCTTCTCGCGGCCTCATTCC||||||;BaseQRankSum=-1.452e+00;ClippingRankSum=0.00;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=43.65;MQRankSum=1.04;QD=28.32;SOR=0.784;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",11562340,".","A","G","0/0","1/1",1420.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004489994.1-1-LOC101492268|GENE_exon-XM_004489994.1-1-LOC101492268|intergenic_region|GENE_exon-XM_004489994.1-1-LOC101492268|||n.11562340A>G||||||;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.07;SOR=0.871;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",11690397,".","A","C","0/1","1/1",402.85,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004489963.3-1|GENE_exon-XM_004489963.3-1|transcript|rna-XM_004489963.3|protein_coding||c.-5080T>G|||||4812|,C|upstream_gene_variant|MODIFIER|exon-XR_003471452.1-1|GENE_exon-XR_003471452.1-1|transcript|rna-XR_003471452.1|pseudogene||n.-1163T>G|||||1163|,C|upstream_gene_variant|MODIFIER|exon-XR_003471453.1-1|GENE_exon-XR_003471453.1-1|transcript|rna-XR_003471453.1|pseudogene||n.-1163T>G|||||1163|,C|downstream_gene_variant|MODIFIER|LOC101509999|gene-LOC101509999|transcript|XM_004489963.3|protein_coding||c.*8187A>C|||||4812|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101510537|gene-LOC101510537|transcript|XR_003471452.1|pseudogene||n.*3454A>C|||||1163|,C|downstream_gene_variant|MODIFIER|LOC101510537|gene-LOC101510537|transcript|XR_003471453.1|pseudogene||n.*3454A>C|||||1163|,C|intron_variant|MODIFIER|exon-XM_027331657.1-1|GENE_exon-XM_027331657.1-1|transcript|rna-XM_027331657.1|protein_coding|2/6|c.10+34T>G||||||,C|intron_variant|MODIFIER|exon-XM_027331658.1-1|GENE_exon-XM_027331658.1-1|transcript|rna-XM_027331658.1|protein_coding|2/6|c.10+34T>G||||||,C|intron_variant|MODIFIER|exon-XR_003471451.1-1|GENE_exon-XR_003471451.1-1|transcript|rna-XR_003471451.1|pseudogene|2/6|n.195+34T>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101510537|gene-LOC101510537|transcript|XM_027331657.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101510537|gene-LOC101510537|transcript|XM_027331658.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101510537|gene-LOC101510537|transcript|XR_003471451.1|pseudogene||||||||;BaseQRankSum=0.431;ClippingRankSum=0.00;DP=25;ExcessHet=3.0103;FS=15.055;MLEAC=3;MLEAF=0.750;MQ=36.37;MQRankSum=-3.600e-01;QD=16.11;ReadPosRankSum=1.59;SOR=3.127;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",11897022,".","G","A","0/0","1/1",1569.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004489972.3-1-exon-XM_004489974.3-1|GENE_exon-XM_004489972.3-1-GENE_exon-XM_004489974.3-1|intergenic_region|GENE_exon-XM_004489972.3-1-GENE_exon-XM_004489974.3-1|||n.11897022G>A||||||;DP=110;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.78;SOR=0.754;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",12135291,".","T","C","0/0","0/1",243.87,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004489984.3-1-exon-XM_004489985.3-1|GENE_exon-XM_004489984.3-1-GENE_exon-XM_004489985.3-1|intergenic_region|GENE_exon-XM_004489984.3-1-GENE_exon-XM_004489985.3-1|||n.12135291T>C||||||;BaseQRankSum=-1.111e+00;ClippingRankSum=0.00;DP=28;ExcessHet=3.9794;FS=2.158;MLEAC=2;MLEAF=0.500;MQ=40.79;MQRankSum=-9.620e-01;QD=16.26;ReadPosRankSum=2.25;SOR=1.609;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",12332575,".","T","A","0/1","0/0",259.19,"PASS","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101510202|gene-LOC101510202|transcript|XM_004490046.2|protein_coding||c.*5190T>A|||||2822|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004490046.2-1|GENE_exon-XM_004490046.2-1|transcript|rna-XM_004490046.2|protein_coding||c.*2938T>A|||||2822|,A|intergenic_region|MODIFIER|exon-XM_004490046.2-1-exon-XM_012712830.2-1|GENE_exon-XM_004490046.2-1-GENE_exon-XM_012712830.2-1|intergenic_region|GENE_exon-XM_004490046.2-1-GENE_exon-XM_012712830.2-1|||n.12332575T>A||||||;BaseQRankSum=-2.047e+00;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.07;MQRankSum=-7.035e+00;QD=4.71;ReadPosRankSum=0.00;SOR=0.591;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",12478357,".","G","A","0/0","0/1",155.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101500165|gene-LOC101500165|transcript|XM_004490013.3|protein_coding||c.-4397G>A|||||1460|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101500165|gene-LOC101500165|transcript|XM_027331653.1|protein_coding||c.-4389G>A|||||1460|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101500165|gene-LOC101500165|transcript|XM_012712827.2|protein_coding||c.-4397G>A|||||1460|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101500165|gene-LOC101500165|transcript|XM_012712828.2|protein_coding||c.-4397G>A|||||1460|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101500165|gene-LOC101500165|transcript|XM_027331652.1|protein_coding||c.-4397G>A|||||1460|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_027331653.1-1|GENE_exon-XM_027331653.1-1|transcript|rna-XM_027331653.1|protein_coding||c.*2921C>T|||||1460|,A|downstream_gene_variant|MODIFIER|exon-XM_004490013.3-1|GENE_exon-XM_004490013.3-1|transcript|rna-XM_004490013.3|protein_coding||c.*2921C>T|||||1460|,A|downstream_gene_variant|MODIFIER|exon-XM_012712827.2-1|GENE_exon-XM_012712827.2-1|transcript|rna-XM_012712827.2|protein_coding||c.*2921C>T|||||1460|,A|downstream_gene_variant|MODIFIER|exon-XM_012712828.2-1|GENE_exon-XM_012712828.2-1|transcript|rna-XM_012712828.2|protein_coding||c.*2921C>T|||||1460|,A|downstream_gene_variant|MODIFIER|exon-XM_027331652.1-1|GENE_exon-XM_027331652.1-1|transcript|rna-XM_027331652.1|protein_coding||c.*2921C>T|||||1460|,A|intragenic_variant|MODIFIER|LOC113785376|gene-LOC113785376|gene_variant|gene-LOC113785376|||n.12478357G>A||||||,A|non_coding_transcript_exon_variant|MODIFIER|exon-XR_003471437.1-1|GENE_exon-XR_003471437.1-1|transcript|rna-XR_003471437.1|pseudogene|2/3|n.149C>T||||||;BaseQRankSum=3.85;ClippingRankSum=0.00;DP=249;ExcessHet=3.0103;FS=4.660;MLEAC=1;MLEAF=0.250;MQ=51.90;MQRankSum=-1.101e+00;QD=1.20;ReadPosRankSum=1.08;SOR=1.176;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",12931772,".","G","A","0/0","0/1",66.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_001143339.2-1|GENE_exon-XR_001143339.2-1|transcript|rna-XR_001143339.2|pseudogene||n.-1750G>A|||||1750|,A|intergenic_region|MODIFIER|exon-XM_004490042.2-1-exon-XR_001143339.2-1|GENE_exon-XM_004490042.2-1-GENE_exon-XR_001143339.2-1|intergenic_region|GENE_exon-XM_004490042.2-1-GENE_exon-XR_001143339.2-1|||n.12931772G>A||||||;BaseQRankSum=3.93;ClippingRankSum=0.00;DP=346;ExcessHet=3.0103;FS=23.697;MLEAC=1;MLEAF=0.250;MQ=52.97;MQRankSum=-1.335e+00;QD=0.50;ReadPosRankSum=-7.410e-01;SOR=3.075;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",12981073,".","T","C","0/1","0/0",102.19,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|LOC101509240|gene-LOC101509240|transcript|XM_004490043.2|protein_coding||c.*5516T>C|||||3438|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004490043.2-1|GENE_exon-XM_004490043.2-1|transcript|rna-XM_004490043.2|protein_coding||c.*3505T>C|||||3438|,C|intergenic_region|MODIFIER|exon-XM_004490043.2-1-exon-XM_027332059.1-1|GENE_exon-XM_004490043.2-1-GENE_exon-XM_027332059.1-1|intergenic_region|GENE_exon-XM_004490043.2-1-GENE_exon-XM_027332059.1-1|||n.12981073T>C||||||;BaseQRankSum=-2.341e+00;ClippingRankSum=0.00;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=30.80;MQRankSum=-1.617e+00;QD=7.30;SOR=0.052;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",13250572,".","C","T","0/1","0/0",479.19,"BQB","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004490067.3-1-exon-XM_004490069.3-1|GENE_exon-XM_004490067.3-1-GENE_exon-XM_004490069.3-1|intergenic_region|GENE_exon-XM_004490067.3-1-GENE_exon-XM_004490069.3-1|||n.13250572C>T||||||;BaseQRankSum=4.57;ClippingRankSum=0.00;DP=103;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=7.37;ReadPosRankSum=-7.500e-01;SOR=0.577;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",13400925,".","C","T","0/1","0/0",53.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004490071.3-1|GENE_exon-XM_004490071.3-1|transcript|rna-XM_004490071.3|protein_coding||c.-4123G>A|||||3936|,T|upstream_gene_variant|MODIFIER|LOC105851150|gene-LOC105851150|transcript|XM_027332062.1|protein_coding||c.-2319C>T|||||920|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_027332062.1-1|GENE_exon-XM_027332062.1-1|transcript|rna-XM_027332062.1|protein_coding||c.-920C>T|||||920|,T|downstream_gene_variant|MODIFIER|LOC101491809|gene-LOC101491809|transcript|XM_004490071.3|protein_coding||c.*6351C>T|||||3936|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004490071.3-1-exon-XM_027332062.1-1|GENE_exon-XM_004490071.3-1-GENE_exon-XM_027332062.1-1|intergenic_region|GENE_exon-XM_004490071.3-1-GENE_exon-XM_027332062.1-1|||n.13400925C>T||||||;BaseQRankSum=4.54;ClippingRankSum=0.00;DP=143;ExcessHet=3.0103;FS=21.119;MLEAC=1;MLEAF=0.250;MQ=55.71;MQRankSum=-1.687e+00;QD=0.81;ReadPosRankSum=-2.370e-01;SOR=2.438;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",13872286,".","T","G","0/1","0/0",440.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004490127.3-1-exon-XM_027331901.1-1|GENE_exon-XM_004490127.3-1-GENE_exon-XM_027331901.1-1|intergenic_region|GENE_exon-XM_004490127.3-1-GENE_exon-XM_027331901.1-1|||n.13872286T>G||||||;BaseQRankSum=-4.000e+00;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=8.15;ReadPosRankSum=-1.489e+00;SOR=0.650;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",13990535,".","A","G","0/1","0/0",55.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101504869|gene-LOC101504869|transcript|XM_004490113.3|protein_coding||c.-7873A>G|||||2858|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004490113.3-1|GENE_exon-XM_004490113.3-1|transcript|rna-XM_004490113.3|protein_coding||c.-3031A>G|||||2858|,G|intergenic_region|MODIFIER|exon-XM_012712853.2-1-exon-XM_004490113.3-1|GENE_exon-XM_012712853.2-1-GENE_exon-XM_004490113.3-1|intergenic_region|GENE_exon-XM_012712853.2-1-GENE_exon-XM_004490113.3-1|||n.13990535A>G||||||;BaseQRankSum=-3.758e+00;ClippingRankSum=0.00;DP=64;ExcessHet=3.0103;FS=11.290;MLEAC=1;MLEAF=0.250;MQ=59.13;MQRankSum=0.048;QD=2.51;ReadPosRankSum=-8.180e-01;SOR=2.545;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021161.1",18724593,".","C","T","0/1","0/0",13.43,"MQ40;QD2;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004490268.3-1-TRNAG-CCC|GENE_exon-XM_004490268.3-1-gene-TRNAG-CCC-3|intergenic_region|GENE_exon-XM_004490268.3-1-gene-TRNAG-CCC-3|||n.18724593C>T||||||;BaseQRankSum=2.45;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=23.83;MQRankSum=-5.100e-02;QD=0.71;ReadPosRankSum=0.873;SOR=0.582;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",18854058,".","TA","T","0/1","1/1",2388.15,"PASS","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004490275.2-1-exon-XM_004490276.3-1|GENE_exon-XM_004490275.2-1-GENE_exon-XM_004490276.3-1|intergenic_region|GENE_exon-XM_004490275.2-1-GENE_exon-XM_004490276.3-1|||n.18854059delA||||||;BaseQRankSum=2.81;ClippingRankSum=0.00;DP=94;ExcessHet=3.0103;FS=1.728;MLEAC=3;MLEAF=0.750;MQ=40.11;MQRankSum=-6.296e+00;QD=25.68;ReadPosRankSum=0.814;SOR=0.521;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",18983346,".","G","A","0/1","0/0",32.37,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004490280.3-1-exon-XM_004490281.3-1|GENE_exon-XM_004490280.3-1-GENE_exon-XM_004490281.3-1|intergenic_region|GENE_exon-XM_004490280.3-1-GENE_exon-XM_004490281.3-1|||n.18983346G>A||||||;BaseQRankSum=4.00;ClippingRankSum=0.00;DP=102;ExcessHet=3.0103;FS=7.605;MLEAC=1;MLEAF=0.250;MQ=57.20;MQRankSum=-1.148e+00;QD=0.69;ReadPosRankSum=-2.970e-01;SOR=2.476;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",19220672,".","A","G","0/1","0/0",119.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003471716.1-1-exon-XR_003471715.1-1|GENE_exon-XR_003471716.1-1-GENE_exon-XR_003471715.1-1|intergenic_region|GENE_exon-XR_003471716.1-1-GENE_exon-XR_003471715.1-1|||n.19220672A>G||||||;BaseQRankSum=-3.238e+00;ClippingRankSum=0.00;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=2.98;ReadPosRankSum=-1.207e+00;SOR=0.760;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",19447202,".","G","A","0/0","0/1",46.21,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004490300.3-1-exon-XR_001143355.2-1|GENE_exon-XM_004490300.3-1-GENE_exon-XR_001143355.2-1|intergenic_region|GENE_exon-XM_004490300.3-1-GENE_exon-XR_001143355.2-1|||n.19447202G>A||||||;BaseQRankSum=3.87;ClippingRankSum=0.00;DP=305;ExcessHet=3.0103;FS=5.768;MLEAC=1;MLEAF=0.250;MQ=37.30;MQRankSum=0.617;QD=0.27;ReadPosRankSum=0.896;SOR=0.254;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",19502433,".","A","T","0/0","0/1",41.19,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|LOC101495721-exon-XM_004490311.2-1|LOC101495721-GENE_exon-XM_004490311.2-1|intergenic_region|LOC101495721-GENE_exon-XM_004490311.2-1|||n.19502433A>T||||||;BaseQRankSum=-4.510e-01;ClippingRankSum=0.00;DP=94;ExcessHet=3.0103;FS=8.307;MLEAC=1;MLEAF=0.250;MQ=59.15;MQRankSum=-3.157e+00;QD=0.76;ReadPosRankSum=1.74;SOR=1.238;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",19711903,".","A","G","0/0","0/1",83.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027331791.1-1-exon-XM_004490303.3-1|GENE_exon-XM_027331791.1-1-GENE_exon-XM_004490303.3-1|intergenic_region|GENE_exon-XM_027331791.1-1-GENE_exon-XM_004490303.3-1|||n.19711903A>G||||||;BaseQRankSum=-3.223e+00;ClippingRankSum=0.00;DP=197;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.250;MQ=47.58;MQRankSum=-2.005e+00;QD=0.68;ReadPosRankSum=1.82;SOR=0.560;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",19818632,".","GT","G","0/0","0/1",57.15,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027331791.1-1-exon-XM_004490303.3-1|GENE_exon-XM_027331791.1-1-GENE_exon-XM_004490303.3-1|intergenic_region|GENE_exon-XM_027331791.1-1-GENE_exon-XM_004490303.3-1|||n.19818633delT||||||;BaseQRankSum=-1.891e+00;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=17.393;MLEAC=1;MLEAF=0.250;MQ=56.52;MQRankSum=-6.353e+00;QD=1.36;ReadPosRankSum=0.369;SOR=3.597;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",19838208,".","T","G","0/1","0/0",191.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027331791.1-1-exon-XM_004490303.3-1|GENE_exon-XM_027331791.1-1-GENE_exon-XM_004490303.3-1|intergenic_region|GENE_exon-XM_027331791.1-1-GENE_exon-XM_004490303.3-1|||n.19838208T>G||||||;BaseQRankSum=-2.896e+00;ClippingRankSum=0.00;DP=65;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.250;MQ=59.12;MQRankSum=1.11;QD=7.08;ReadPosRankSum=0.030;SOR=0.883;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021161.1",22959635,".","G","A","0/0","0/1",127.19,"PASS","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004490386.3-1-exon-XM_004490387.3-1|GENE_exon-XM_004490386.3-1-GENE_exon-XM_004490387.3-1|intergenic_region|GENE_exon-XM_004490386.3-1-GENE_exon-XM_004490387.3-1|||n.22959635G>A||||||;BaseQRankSum=2.14;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=10.387;MLEAC=1;MLEAF=0.250;MQ=56.15;MQRankSum=-6.107e+00;QD=3.26;ReadPosRankSum=-1.310e+00;SOR=2.258;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",23150193,".","TA","T","0/1","1/1",1402.15,"PASS","AC=3;AF=0.750;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027331684.1-1|GENE_exon-XM_027331684.1-1|transcript|rna-XM_027331684.1|protein_coding||c.-4522delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331686.1-1|GENE_exon-XM_027331686.1-1|transcript|rna-XM_027331686.1|protein_coding||c.-4522delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331687.1-1|GENE_exon-XM_027331687.1-1|transcript|rna-XM_027331687.1|protein_coding||c.-4522delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331688.1-1|GENE_exon-XM_027331688.1-1|transcript|rna-XM_027331688.1|protein_coding||c.-4522delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331689.1-1|GENE_exon-XM_027331689.1-1|transcript|rna-XM_027331689.1|protein_coding||c.-4522delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331690.1-1|GENE_exon-XM_027331690.1-1|transcript|rna-XM_027331690.1|protein_coding||c.-4720delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331691.1-1|GENE_exon-XM_027331691.1-1|transcript|rna-XM_027331691.1|protein_coding||c.-4720delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331692.1-1|GENE_exon-XM_027331692.1-1|transcript|rna-XM_027331692.1|protein_coding||c.-4720delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331693.1-1|GENE_exon-XM_027331693.1-1|transcript|rna-XM_027331693.1|protein_coding||c.-4720delT|||||1398|,T|upstream_gene_variant|MODIFIER|exon-XM_027331685.1-1|GENE_exon-XM_027331685.1-1|transcript|rna-XM_027331685.1|protein_coding||c.-4522delT|||||1200|,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331684.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331686.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331687.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331688.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331689.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331690.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331691.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331692.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331693.1|protein_coding||c.*9559delA|||||1398|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491410|gene-LOC101491410|transcript|XM_027331685.1|protein_coding||c.*9559delA|||||1200|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027331685.1-1-LOC101505288|GENE_exon-XM_027331685.1-1-LOC101505288|intergenic_region|GENE_exon-XM_027331685.1-1-LOC101505288|||n.23150194delA||||||;BaseQRankSum=0.762;ClippingRankSum=0.00;DP=104;ExcessHet=3.0103;FS=1.855;MLEAC=3;MLEAF=0.750;MQ=42.40;MQRankSum=-1.440e-01;QD=14.92;ReadPosRankSum=0.705;SOR=0.460;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021161.1",23574999,".","A","G","0/0","0/1",177.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101509359|gene-LOC101509359|transcript|XM_004490408.3|protein_coding||c.*24117A>G|||||3154|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004490408.3-1|GENE_exon-XM_004490408.3-1|transcript|rna-XM_004490408.3|protein_coding||c.*3591A>G|||||3154|,G|downstream_gene_variant|MODIFIER|exon-XM_004490409.3-1|GENE_exon-XM_004490409.3-1|transcript|rna-XM_004490409.3|protein_coding||c.*3591A>G|||||3154|,G|downstream_gene_variant|MODIFIER|exon-XM_012712938.2-1|GENE_exon-XM_012712938.2-1|transcript|rna-XM_012712938.2|protein_coding||c.*3591A>G|||||3154|,G|downstream_gene_variant|MODIFIER|exon-XM_012712937.2-1|GENE_exon-XM_012712937.2-1|transcript|rna-XM_012712937.2|protein_coding||c.*3591A>G|||||3095|,G|downstream_gene_variant|MODIFIER|exon-XM_027331713.1-1|GENE_exon-XM_027331713.1-1|transcript|rna-XM_027331713.1|protein_coding||c.*3591A>G|||||3095|,G|downstream_gene_variant|MODIFIER|LOC101509359|gene-LOC101509359|transcript|XM_004490409.3|protein_coding||c.*24117A>G|||||3154|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101509359|gene-LOC101509359|transcript|XM_012712938.2|protein_coding||c.*24117A>G|||||3154|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101509359|gene-LOC101509359|transcript|XM_012712937.2|protein_coding||c.*24117A>G|||||3095|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101509359|gene-LOC101509359|transcript|XM_027331713.1|protein_coding||c.*24117A>G|||||3095|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_012712937.2-1-exon-XM_027332087.1-1|GENE_exon-XM_012712937.2-1-GENE_exon-XM_027332087.1-1|intergenic_region|GENE_exon-XM_012712937.2-1-GENE_exon-XM_027332087.1-1|||n.23574999A>G||||||;BaseQRankSum=-1.285e+00;ClippingRankSum=0.00;DP=62;ExcessHet=3.0103;FS=21.087;MLEAC=1;MLEAF=0.250;MQ=41.43;MQRankSum=-3.201e+00;QD=7.09;ReadPosRankSum=1.14;SOR=4.612;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",23759324,".","C","G","0/1","0/0",357.19,"map","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|exon-XR_189431.3-1|GENE_exon-XR_189431.3-1|transcript|rna-XR_189431.3|pseudogene||n.*4172C>G|||||4172|,G|downstream_gene_variant|MODIFIER|LOC101511184|gene-LOC101511184|transcript|XM_004490414.3|protein_coding||c.*21548C>G|||||4180|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004490414.3-1|GENE_exon-XM_004490414.3-1|transcript|rna-XM_004490414.3|protein_coding||c.*4649C>G|||||4180|,G|downstream_gene_variant|MODIFIER|LOC101511184|gene-LOC101511184|transcript|XR_189431.3|pseudogene||n.*21549C>G|||||4172|,G|intergenic_region|MODIFIER|exon-XR_189431.3-1-exon-XR_003471497.1-1|GENE_exon-XR_189431.3-1-GENE_exon-XR_003471497.1-1|intergenic_region|GENE_exon-XR_189431.3-1-GENE_exon-XR_003471497.1-1|||n.23759324C>G||||||;BaseQRankSum=-2.744e+00;ClippingRankSum=0.00;DP=81;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=7.76;ReadPosRankSum=0.220;SOR=1.429;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021161.1",25425596,".","G","T","0/1","0/0",30.19,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|stop_gained|HIGH|exon-XM_027332098.1-1|GENE_exon-XM_027332098.1-1|transcript|rna-XM_027332098.1|protein_coding|2/3|c.370G>T|p.Glu124*|433/642|370/579|124/192||,T|upstream_gene_variant|MODIFIER|exon-XR_003471641.1-1|GENE_exon-XR_003471641.1-1|transcript|rna-XR_003471641.1|pseudogene||n.-481G>T|||||481|,T|upstream_gene_variant|MODIFIER|exon-XR_003471650.1-1|GENE_exon-XR_003471650.1-1|transcript|rna-XR_003471650.1|pseudogene||n.-785G>T|||||785|,T|non_coding_transcript_variant|MODIFIER|LOC105851636|gene-LOC105851636|transcript|XM_027332098.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=2.95;ClippingRankSum=0.00;DP=52;ExcessHet=3.0103;FS=4.071;MLEAC=1;MLEAF=0.250;MQ=54.46;MQRankSum=1.19;QD=1.31;ReadPosRankSum=1.49;SOR=1.638;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",26447336,".","T","C","0/1","0/0",114.87,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004490633.1-1-exon-XM_004490599.3-1|GENE_exon-XM_004490633.1-1-GENE_exon-XM_004490599.3-1|intergenic_region|GENE_exon-XM_004490633.1-1-GENE_exon-XM_004490599.3-1|||n.26447336T>C||||||;BaseQRankSum=-1.860e+00;ClippingRankSum=0.00;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=44.90;MQRankSum=-2.495e+00;QD=8.84;ReadPosRankSum=0.00;SOR=0.527;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",26918643,".","G","T","0/1","0/0",15.32,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101512142|gene-LOC101512142|transcript|XM_027332101.1|protein_coding||c.-16532G>T|||||4534|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_027332101.1-1|GENE_exon-XM_027332101.1-1|transcript|rna-XM_027332101.1|protein_coding||c.-4534G>T|||||4534|,T|intergenic_region|MODIFIER|exon-XM_004490629.3-1-exon-XM_027332101.1-1|GENE_exon-XM_004490629.3-1-GENE_exon-XM_027332101.1-1|intergenic_region|GENE_exon-XM_004490629.3-1-GENE_exon-XM_027332101.1-1|||n.26918643G>T||||||;BaseQRankSum=2.55;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=6.495;MLEAC=1;MLEAF=0.250;MQ=57.66;MQRankSum=-5.319e+00;QD=0.51;ReadPosRankSum=0.480;SOR=2.813;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",27172405,".","T","C","0/1","1/1",915.19,"map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_012713018.2-1-exon-XM_004490648.3-1|GENE_exon-XM_012713018.2-1-GENE_exon-XM_004490648.3-1|intergenic_region|GENE_exon-XM_012713018.2-1-GENE_exon-XM_004490648.3-1|||n.27172405T>C||||||;BaseQRankSum=-2.816e+00;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=3.303;MLEAC=3;MLEAF=0.750;MQ=41.59;MQRankSum=1.68;QD=31.56;ReadPosRankSum=-2.840e-01;SOR=2.226;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",27741735,".","AT","A","0/0","0/1",200.83,"mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004490672.3-1-exon-XM_004490675.3-1|GENE_exon-XM_004490672.3-1-GENE_exon-XM_004490675.3-1|intergenic_region|GENE_exon-XM_004490672.3-1-GENE_exon-XM_004490675.3-1|||n.27741736delT||||||;BaseQRankSum=-1.549e+00;ClippingRankSum=0.00;DP=42;ExcessHet=3.9794;FS=6.628;MLEAC=2;MLEAF=0.500;MQ=52.62;MQRankSum=-1.021e+00;QD=8.73;ReadPosRankSum=-2.128e+00;SOR=0.064;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",28251435,".","C","T","0/0","0/1",231.87,"map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004490736.3-1-exon-XM_004490737.3-1|GENE_exon-XM_004490736.3-1-GENE_exon-XM_004490737.3-1|intergenic_region|GENE_exon-XM_004490736.3-1-GENE_exon-XM_004490737.3-1|||n.28251435C>T||||||;BaseQRankSum=1.16;ClippingRankSum=0.00;DP=149;ExcessHet=3.9794;FS=9.708;MLEAC=2;MLEAF=0.500;MQ=56.48;MQRankSum=-8.079e+00;QD=3.22;ReadPosRankSum=-1.409e+00;SOR=2.206;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",28512143,".","A","G","0/0","0/1",220.19,"BQB","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004490747.3-1-exon-XM_004490748.3-1|GENE_exon-XM_004490747.3-1-GENE_exon-XM_004490748.3-1|intergenic_region|GENE_exon-XM_004490747.3-1-GENE_exon-XM_004490748.3-1|||n.28512143A>G||||||;BaseQRankSum=-4.702e+00;ClippingRankSum=0.00;DP=161;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.250;MQ=52.53;MQRankSum=-5.999e+00;QD=2.94;ReadPosRankSum=-1.965e+00;SOR=0.887;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",28891672,".","C","T","0/0","0/1",78.21,"mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|LOC105851646|LOC105851646|transcript|gene-LOC105851646|pseudogene||n.*1830C>T|||||1830|,T|intragenic_variant|MODIFIER|LOC113785537|gene-LOC113785537|gene_variant|gene-LOC113785537|||n.28891672C>T||||||,T|non_coding_transcript_exon_variant|MODIFIER|exon-XR_003471664.1-1|GENE_exon-XR_003471664.1-1|transcript|rna-XR_003471664.1|pseudogene|2/2|n.449G>A||||||;BaseQRankSum=-1.350e-01;ClippingRankSum=0.00;DP=19;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.250;MQ=43.83;MQRankSum=-1.930e+00;QD=9.78;ReadPosRankSum=-1.570e-01;SOR=2.303;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",29260743,".","C","A","0/1","1/1",328.23,"mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_189446.2-1|GENE_exon-XR_189446.2-1|transcript|rna-XR_189446.2|pseudogene||n.-1714C>A|||||1714|,A|non_coding_transcript_exon_variant|MODIFIER|LOC113785504|LOC113785504|transcript|gene-LOC113785504|pseudogene|4/4|n.2015C>A||||||;BaseQRankSum=2.36;ClippingRankSum=0.00;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=42.68;MQRankSum=2.84;QD=17.28;ReadPosRankSum=-1.720e-01;SOR=1.609;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",29417325,".","T","A","0/0","0/1",374.19,"map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_012713056.1-1-exon-XM_004490797.3-1|GENE_exon-XM_012713056.1-1-GENE_exon-XM_004490797.3-1|intergenic_region|GENE_exon-XM_012713056.1-1-GENE_exon-XM_004490797.3-1|||n.29417325T>A||||||;BaseQRankSum=-6.340e-01;ClippingRankSum=0.00;DP=144;ExcessHet=3.0103;FS=11.132;MLEAC=1;MLEAF=0.250;MQ=54.39;MQRankSum=-8.090e+00;QD=4.80;ReadPosRankSum=-4.008e+00;SOR=2.252;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",29509796,".","C","A","0/1","1/1",925.16,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101506154|LOC101506154|transcript|gene-LOC101506154|pseudogene||n.-4658C>A|||||4658|,A|downstream_gene_variant|MODIFIER|exon-XR_003471665.1-1|GENE_exon-XR_003471665.1-1|transcript|rna-XR_003471665.1|pseudogene||n.*779G>T|||||779|,A|intergenic_region|MODIFIER|LOC101489572-exon-XR_003471665.1-1|gene-LOC101489572-GENE_exon-XR_003471665.1-1|intergenic_region|gene-LOC101489572-GENE_exon-XR_003471665.1-1|||n.29509796C>A||||||;BaseQRankSum=1.90;ClippingRankSum=0.00;DP=22;ExcessHet=3.0103;FS=7.404;MLEAC=3;MLEAF=0.750;MQ=24.98;MQRankSum=-1.810e+00;QD=29.92;ReadPosRankSum=-4.750e-01;SOR=3.127;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",30314308,".","A","T","0/1","0/0",206.87,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027331656.1-1-exon-XM_004490881.3-1|GENE_exon-XM_027331656.1-1-GENE_exon-XM_004490881.3-1|intergenic_region|GENE_exon-XM_027331656.1-1-GENE_exon-XM_004490881.3-1|||n.30314308A>T||||||;BaseQRankSum=1.25;ClippingRankSum=0.00;DP=134;ExcessHet=3.9794;FS=1.337;MLEAC=2;MLEAF=0.500;MQ=59.00;MQRankSum=-2.679e+00;QD=2.91;ReadPosRankSum=0.660;SOR=1.064;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021161.1",31276914,".","A","C","0/1","0/0",63.19,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XR_003471443.1-1-exon-XM_004490980.2-1|GENE_exon-XR_003471443.1-1-GENE_exon-XM_004490980.2-1|intergenic_region|GENE_exon-XR_003471443.1-1-GENE_exon-XM_004490980.2-1|||n.31276914A>C||||||;BaseQRankSum=-2.327e+00;ClippingRankSum=0.00;DP=79;ExcessHet=3.0103;FS=9.299;MLEAC=1;MLEAF=0.250;MQ=57.88;MQRankSum=-6.431e+00;QD=1.47;ReadPosRankSum=-3.013e+00;SOR=3.164;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",32212680,".","TGACAA","T","0/1","0/0",30.15,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027331777.1-1-exon-XR_189454.3-1|GENE_exon-XM_027331777.1-1-GENE_exon-XR_189454.3-1|intergenic_region|GENE_exon-XM_027331777.1-1-GENE_exon-XR_189454.3-1|||n.32212681_32212685delGACAA||||||;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=53.58;MQRankSum=-2.685e+00;QD=0.81;ReadPosRankSum=1.31;SOR=0.301;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021161.1",32361701,".","T","C","0/0","0/1",134.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004491075.3-1-LOC105851668|GENE_exon-XM_004491075.3-1-LOC105851668|intergenic_region|GENE_exon-XM_004491075.3-1-LOC105851668|||n.32361701T>C||||||;BaseQRankSum=-2.014e+00;ClippingRankSum=0.00;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=55.40;MQRankSum=-7.481e+00;QD=2.06;ReadPosRankSum=-1.343e+00;SOR=0.733;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",33167190,".","T","TA","0/0","0/1",1220.83,"BQB;SB60SNV","AC=1;AF=0.250;AN=4;ANN=TA|upstream_gene_variant|MODIFIER|exon-XM_004491241.1-1|GENE_exon-XM_004491241.1-1|transcript|rna-XM_004491241.1|protein_coding||c.-400_-399insT|||||400|,TA|downstream_gene_variant|MODIFIER|LOC101496386|gene-LOC101496386|transcript|XM_004491241.1|protein_coding||c.*986_*987insA|||||400|WARNING_TRANSCRIPT_NO_START_CODON,TA|intergenic_region|MODIFIER|exon-XM_004491241.1-1-exon-XM_004491161.3-1|GENE_exon-XM_004491241.1-1-GENE_exon-XM_004491161.3-1|intergenic_region|GENE_exon-XM_004491241.1-1-GENE_exon-XM_004491161.3-1|||n.33167190_33167191insA||||||;BaseQRankSum=-4.795e+00;ClippingRankSum=0.00;DP=153;ExcessHet=3.9794;FS=67.980;MLEAC=2;MLEAF=0.500;MQ=54.25;MQRankSum=-9.061e+00;QD=13.72;SOR=5.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021161.1",34005061,".","C","T","0/0","0/1",186.19,"map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101500293|gene-LOC101500293|transcript|XM_004491250.1|protein_coding||c.-5359C>T|||||3005|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004491250.1-1|GENE_exon-XM_004491250.1-1|transcript|rna-XM_004491250.1|protein_coding||c.-3005C>T|||||3005|,T|intergenic_region|MODIFIER|exon-XR_003471658.1-1-exon-XM_004491250.1-1|GENE_exon-XR_003471658.1-1-GENE_exon-XM_004491250.1-1|intergenic_region|GENE_exon-XR_003471658.1-1-GENE_exon-XM_004491250.1-1|||n.34005061C>T||||||;BaseQRankSum=3.99;ClippingRankSum=0.00;DP=165;ExcessHet=3.0103;FS=15.365;MLEAC=1;MLEAF=0.250;MQ=60.05;MQRankSum=-3.176e+00;QD=2.66;ReadPosRankSum=0.493;SOR=1.504;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",34087397,".","A","T","0/0","0/1",99.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012713207.2-1-LOC101495074|GENE_exon-XM_012713207.2-1-LOC101495074|intergenic_region|GENE_exon-XM_012713207.2-1-LOC101495074|||n.34087397A>T||||||;BaseQRankSum=3.30;ClippingRankSum=0.00;DP=104;ExcessHet=3.0103;FS=5.068;MLEAC=1;MLEAF=0.250;MQ=47.84;MQRankSum=-2.722e+00;QD=2.16;ReadPosRankSum=1.29;SOR=2.179;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",35273788,".","T","C","0/1","0/0",497.87,"BQB","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004491398.3-1-exon-XM_004491413.3-1|GENE_exon-XM_004491398.3-1-GENE_exon-XM_004491413.3-1|intergenic_region|GENE_exon-XM_004491398.3-1-GENE_exon-XM_004491413.3-1|||n.35273788T>C||||||;BaseQRankSum=-7.267e+00;ClippingRankSum=0.00;DP=357;ExcessHet=3.9794;FS=11.141;MLEAC=2;MLEAF=0.500;MQ=58.48;MQRankSum=-5.868e+00;QD=2.72;ReadPosRankSum=0.011;SOR=0.467;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021161.1",35315791,".","T","C","0/0","0/1",110.41,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004491398.3-1-exon-XM_004491413.3-1|GENE_exon-XM_004491398.3-1-GENE_exon-XM_004491413.3-1|intergenic_region|GENE_exon-XM_004491398.3-1-GENE_exon-XM_004491413.3-1|||n.35315791T>C||||||;BaseQRankSum=-3.735e+00;ClippingRankSum=0.00;DP=151;ExcessHet=3.0103;FS=17.639;MLEAC=1;MLEAF=0.250;MQ=57.49;MQRankSum=-7.501e+00;QD=1.49;ReadPosRankSum=1.01;SOR=3.254;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021161.1",35631808,".","T","TA","0/1","0/0",11.47,"QD2","AC=1;AF=0.250;AN=4;ANN=TA|upstream_gene_variant|MODIFIER|exon-XM_004491606.2-1|GENE_exon-XM_004491606.2-1|transcript|rna-XM_004491606.2|protein_coding||c.-4158_-4157insT|||||4134|,TA|downstream_gene_variant|MODIFIER|LOC101505402|gene-LOC101505402|transcript|XM_004491606.2|protein_coding||c.*4717_*4718insA|||||4134|WARNING_TRANSCRIPT_NO_START_CODON,TA|intergenic_region|MODIFIER|exon-XM_004491606.2-1-exon-XM_004491465.2-1|GENE_exon-XM_004491606.2-1-GENE_exon-XM_004491465.2-1|intergenic_region|GENE_exon-XM_004491606.2-1-GENE_exon-XM_004491465.2-1|||n.35631808_35631809insA||||||;BaseQRankSum=-5.000e-03;ClippingRankSum=0.00;DP=241;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.250;MQ=58.65;MQRankSum=-8.694e+00;QD=0.09;ReadPosRankSum=-4.770e-01;SOR=0.952;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021162.1",1533063,".","T","G","0/0","0/1",14.04,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|LOC101503356-LOC101510769|LOC101503356-LOC101510769|intergenic_region|LOC101503356-LOC101510769|||n.1533063T>G||||||;BaseQRankSum=-1.778e+00;ClippingRankSum=0.00;DP=41;ExcessHet=3.9794;FS=14.059;MLEAC=2;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=0.70;ReadPosRankSum=0.954;SOR=1.426;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021162.1",3739038,".","C","A","0/1","0/0",329.19,"BQB","AC=1;AF=0.250;AN=4;ANN=A|intron_variant|MODIFIER|LOC101504881|LOC101504881|transcript|gene-LOC101504881|pseudogene|4/5|n.843+4189G>T||||||;BaseQRankSum=4.62;ClippingRankSum=0.00;DP=129;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.250;MQ=54.53;MQRankSum=-7.173e+00;QD=5.49;ReadPosRankSum=1.62;SOR=1.445;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",4128731,".","T","C","0/1","1/1",300.19,"map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_012713339.1-1-LOC101489900|GENE_exon-XM_012713339.1-1-LOC101489900|intergenic_region|GENE_exon-XM_012713339.1-1-LOC101489900|||n.4128731T>C||||||;BaseQRankSum=-2.450e+00;ClippingRankSum=0.00;DP=19;ExcessHet=3.0103;FS=14.548;MLEAC=3;MLEAF=0.750;MQ=40.72;MQRankSum=1.24;QD=15.80;ReadPosRankSum=0.00;SOR=5.549;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",4304421,".","A","G","0/1","0/0",132.2,"mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004491769.2-1-exon-XM_027332488.1-1|GENE_exon-XM_004491769.2-1-GENE_exon-XM_027332488.1-1|intergenic_region|GENE_exon-XM_004491769.2-1-GENE_exon-XM_027332488.1-1|||n.4304421A>G||||||;BaseQRankSum=-1.145e+00;ClippingRankSum=0.00;DP=47;ExcessHet=3.0103;FS=9.084;MLEAC=1;MLEAF=0.250;MQ=52.36;MQRankSum=-3.575e+00;QD=6.30;ReadPosRankSum=-5.200e-02;SOR=3.180;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021162.1",8240019,".","T","A","0/0","0/1",22.05,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_012713396.2-1-LOC101492827|GENE_exon-XM_012713396.2-1-LOC101492827|intergenic_region|GENE_exon-XM_012713396.2-1-LOC101492827|||n.8240019T>A||||||;BaseQRankSum=1.09;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.250;MQ=29.21;MQRankSum=1.22;QD=2.45;ReadPosRankSum=-1.732e+00;SOR=2.225;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",8501690,".","A","G","0/1","0/0",53.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|LOC101493802-exon-XM_027332519.1-1|gene-LOC101493802-GENE_exon-XM_027332519.1-1|intergenic_region|gene-LOC101493802-GENE_exon-XM_027332519.1-1|||n.8501690A>G||||||;BaseQRankSum=-4.534e+00;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=14.079;MLEAC=1;MLEAF=0.250;MQ=51.45;MQRankSum=-4.161e+00;QD=1.56;ReadPosRankSum=-3.494e+00;SOR=2.798;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",8941661,".","G","T","0/1","0/0",252.19,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027332844.1-1|GENE_exon-XM_027332844.1-1|transcript|rna-XM_027332844.1|protein_coding||c.-2062C>A|||||2062|,T|downstream_gene_variant|MODIFIER|LOC101503469|gene-LOC101503469|transcript|XM_027332844.1|protein_coding||c.*4085G>T|||||2062|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027332844.1-1-exon-XM_027332307.1-1|GENE_exon-XM_027332844.1-1-GENE_exon-XM_027332307.1-1|intergenic_region|GENE_exon-XM_027332844.1-1-GENE_exon-XM_027332307.1-1|||n.8941661G>T||||||;BaseQRankSum=-2.910e-01;ClippingRankSum=0.00;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=32.25;MQRankSum=2.45;QD=31.52;ReadPosRankSum=-1.803e+00;SOR=0.693;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",9066482,".","T","A","0/1","0/0",53.19,"MQ40;QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC101503696-exon-XM_027332845.1-1|gene-LOC101503696-GENE_exon-XM_027332845.1-1|intergenic_region|gene-LOC101503696-GENE_exon-XM_027332845.1-1|||n.9066482T>A||||||;BaseQRankSum=-3.676e+00;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=25.135;MLEAC=1;MLEAF=0.250;MQ=39.66;MQRankSum=-1.081e+00;QD=0.89;ReadPosRankSum=-2.108e+00;SOR=4.166;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",9202497,".","G","A","0/0","0/1",39.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004491953.3-1-exon-XM_004491954.3-1|GENE_exon-XM_004491953.3-1-GENE_exon-XM_004491954.3-1|intergenic_region|GENE_exon-XM_004491953.3-1-GENE_exon-XM_004491954.3-1|||n.9202497G>A||||||;BaseQRankSum=3.01;ClippingRankSum=0.00;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=47.94;MQRankSum=-5.006e+00;QD=0.26;ReadPosRankSum=0.585;SOR=0.585;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021162.1",9650793,".","T","C","0/1","0/0",81.19,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|LOC113785798-exon-XM_004491979.3-1|LOC113785798-GENE_exon-XM_004491979.3-1|intergenic_region|LOC113785798-GENE_exon-XM_004491979.3-1|||n.9650793T>C||||||;BaseQRankSum=-3.087e+00;ClippingRankSum=0.00;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=39.29;MQRankSum=0.00;QD=6.77;ReadPosRankSum=-1.939e+00;SOR=0.368;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",9939683,".","G","C","0/1","0/0",120.87,"mrd30","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_027332492.1-1|GENE_exon-XM_027332492.1-1|transcript|rna-XM_027332492.1|protein_coding|1/1|c.301-18G>C||||||,C|non_coding_transcript_variant|MODIFIER|LOC113785718|gene-LOC113785718|transcript|XM_027332492.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.347e+00;ClippingRankSum=0.00;DP=59;ExcessHet=3.9794;FS=12.128;MLEAC=2;MLEAF=0.500;MQ=59.58;MQRankSum=-1.900e+00;QD=4.83;ReadPosRankSum=-1.090e+00;SOR=3.611;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",10159272,".","C","T","0/1","0/0",336.19,"BQB","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004491993.3-1-exon-XM_012713429.2-1|GENE_exon-XM_004491993.3-1-GENE_exon-XM_012713429.2-1|intergenic_region|GENE_exon-XM_004491993.3-1-GENE_exon-XM_012713429.2-1|||n.10159272C>T||||||;BaseQRankSum=5.56;ClippingRankSum=0.00;DP=141;ExcessHet=3.0103;FS=33.472;MLEAC=1;MLEAF=0.250;MQ=56.22;MQRankSum=-8.821e+00;QD=4.26;ReadPosRankSum=0.126;SOR=5.283;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",10369821,".","T","G","0/0","0/1",124.41,"MQ40;map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004492018.2-1-LOC101497694|GENE_exon-XM_004492018.2-1-LOC101497694|intergenic_region|GENE_exon-XM_004492018.2-1-LOC101497694|||n.10369821T>G||||||;BaseQRankSum=-1.788e+00;ClippingRankSum=0.00;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=31.34;MQRankSum=0.242;QD=4.44;ReadPosRankSum=1.67;SOR=0.050;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",10920604,".","C","T","0/1","0/0",72.86,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_004492044.1-1|GENE_exon-XM_004492044.1-1|transcript|rna-XM_004492044.1|protein_coding|2/2|c.1000-200G>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC101515508|gene-LOC101515508|transcript|XM_004492044.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.57;ClippingRankSum=0.00;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=52.03;MQRankSum=-1.780e+00;QD=7.29;ReadPosRankSum=-1.019e+00;SOR=0.223;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",10993537,".","G","C","0/1","0/0",190.19,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XR_003472040.1-1-exon-XR_003471888.1-1|GENE_exon-XR_003472040.1-1-GENE_exon-XR_003471888.1-1|intergenic_region|GENE_exon-XR_003472040.1-1-GENE_exon-XR_003471888.1-1|||n.10993537G>C||||||;BaseQRankSum=3.76;ClippingRankSum=0.00;DP=291;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.250;MQ=30.42;MQRankSum=0.011;QD=1.53;ReadPosRankSum=-2.500e-01;SOR=0.368;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",11214118,".","G","GTGTGATATGTTGTTATAATGGTTGTGTTGAACATATTCAAAGTCTGAAGAATAAATGTTA","1/1","0/0",372.39,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=GTGTGATATGTTGTTATAATGGTTGTGTTGAACATATTCAAAGTCTGAAGAATAAATGTTA|upstream_gene_variant|MODIFIER|LOC101489903|gene-LOC101489903|transcript|XM_004492048.1|protein_coding||c.-3166_-3165insTGTGATATGTTGTTATAATGGTTGTGTTGAACATATTCAAAGTCTGAAGAATAAATGTTA|||||2160|WARNING_TRANSCRIPT_NO_START_CODON,GTGTGATATGTTGTTATAATGGTTGTGTTGAACATATTCAAAGTCTGAAGAATAAATGTTA|upstream_gene_variant|MODIFIER|exon-XM_004492048.1-1|GENE_exon-XM_004492048.1-1|transcript|rna-XM_004492048.1|protein_coding||c.-2161_-2160insTGTGATATGTTGTTATAATGGTTGTGTTGAACATATTCAAAGTCTGAAGAATAAATGTTA|||||2160|,GTGTGATATGTTGTTATAATGGTTGTGTTGAACATATTCAAAGTCTGAAGAATAAATGTTA|intergenic_region|MODIFIER|exon-XM_027332854.1-1-exon-XM_004492048.1-1|GENE_exon-XM_027332854.1-1-GENE_exon-XM_004492048.1-1|intergenic_region|GENE_exon-XM_027332854.1-1-GENE_exon-XM_004492048.1-1|||n.11214118_11214119insTGTGATATGTTGTTATAATGGTTGTGTTGAACATATTCAAAGTCTGAAGAATAAATGTTA||||||;DP=40;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.74;QD=28.39;SOR=4.407;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",11523024,".","G","A","0/0","0/1",15.98,"QD2;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC105851746|gene-LOC105851746|transcript|XM_027332856.1|protein_coding||c.-11813G>A|||||715|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_027332856.1-1|GENE_exon-XM_027332856.1-1|transcript|rna-XM_027332856.1|protein_coding||c.-715G>A|||||715|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,A|intergenic_region|MODIFIER|exon-XM_027332855.1-1-exon-XM_027332856.1-1|GENE_exon-XM_027332855.1-1-GENE_exon-XM_027332856.1-1|intergenic_region|GENE_exon-XM_027332855.1-1-GENE_exon-XM_027332856.1-1|||n.11523024G>A||||||;BaseQRankSum=2.20;ClippingRankSum=0.00;DP=26;ExcessHet=3.0103;FS=2.963;MLEAC=2;MLEAF=0.500;MQ=48.96;MQRankSum=-1.127e+00;QD=1.14;ReadPosRankSum=1.03;SOR=1.802;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",11561587,".","C","T","0/1","0/0",203.19,"BQB;map","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_027332857.1-1|GENE_exon-XM_027332857.1-1|transcript|rna-XM_027332857.1|protein_coding|3/6|c.793-363C>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC113785801|gene-LOC113785801|transcript|XM_027332857.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=6.18;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.250;MQ=54.33;MQRankSum=-5.004e+00;QD=3.17;ReadPosRankSum=-3.280e-01;SOR=0.452;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021162.1",11930637,".","T","A","0/1","0/0",268.19,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_003471863.1-1|GENE_exon-XR_003471863.1-1|transcript|rna-XR_003471863.1|pseudogene||n.-219A>T|||||219|,A|downstream_gene_variant|MODIFIER|LOC113785677|LOC113785677|transcript|gene-LOC113785677|pseudogene||n.*732A>T|||||732|,A|intergenic_region|MODIFIER|exon-XR_003471863.1-1-LOC113785677|GENE_exon-XR_003471863.1-1-LOC113785677|intergenic_region|GENE_exon-XR_003471863.1-1-LOC113785677|||n.11930637T>A||||||;BaseQRankSum=-6.980e-01;ClippingRankSum=0.00;DP=108;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=4.47;ReadPosRankSum=1.06;SOR=1.024;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",12198383,".","A","T","0/0","0/1",70.87,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_027332861.1-1|GENE_exon-XM_027332861.1-1|transcript|rna-XM_027332861.1|protein_coding|2/3|c.1877-362A>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC113785802|gene-LOC113785802|transcript|XM_027332861.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.13;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.01;MQRankSum=2.48;QD=6.44;ReadPosRankSum=0.00;SOR=1.179;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",12808536,".","G","C","0/1","0/0",17.27,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_004492074.3-1|GENE_exon-XM_004492074.3-1|transcript|rna-XM_004492074.3|protein_coding|1/5|c.470+90G>C||||||,C|intron_variant|MODIFIER|exon-XM_012713456.2-1|GENE_exon-XM_012713456.2-1|transcript|rna-XM_012713456.2|protein_coding|1/4|c.470+90G>C||||||,C|non_coding_transcript_variant|MODIFIER|LOC101502827|gene-LOC101502827|transcript|XM_004492074.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101502827|gene-LOC101502827|transcript|XM_012713456.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=2.59;ClippingRankSum=0.00;DP=132;ExcessHet=3.0103;FS=16.003;MLEAC=1;MLEAF=0.250;MQ=58.08;MQRankSum=-8.464e+00;QD=0.24;ReadPosRankSum=-2.285e+00;SOR=3.907;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",13038227,".","G","A","0/1","0/0",63.19,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_012713466.2-1-LOC101512273|GENE_exon-XM_012713466.2-1-LOC101512273|intergenic_region|GENE_exon-XM_012713466.2-1-LOC101512273|||n.13038227G>A||||||;BaseQRankSum=2.86;ClippingRankSum=0.00;DP=161;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.250;MQ=35.29;MQRankSum=-8.070e-01;QD=0.82;ReadPosRankSum=0.619;SOR=0.396;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021162.1",13201214,".","T","C","0/0","0/1",48.47,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_027332863.1-1-exon-XR_003472024.1-1|GENE_exon-XM_027332863.1-1-GENE_exon-XR_003472024.1-1|intergenic_region|GENE_exon-XM_027332863.1-1-GENE_exon-XR_003472024.1-1|||n.13201214T>C||||||;BaseQRankSum=-9.720e-01;ClippingRankSum=0.00;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=52.53;MQRankSum=-3.568e+00;QD=1.43;ReadPosRankSum=-2.140e-01;SOR=0.384;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",13866122,".","T","G","0/0","0/1",83.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003471795.1-1-exon-XM_004492105.1-1|GENE_exon-XR_003471795.1-1-GENE_exon-XM_004492105.1-1|intergenic_region|GENE_exon-XR_003471795.1-1-GENE_exon-XM_004492105.1-1|||n.13866122T>G||||||;BaseQRankSum=-2.831e+00;ClippingRankSum=0.00;DP=136;ExcessHet=3.0103;FS=3.678;MLEAC=1;MLEAF=0.250;MQ=53.58;MQRankSum=-5.588e+00;QD=1.36;ReadPosRankSum=0.489;SOR=1.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",13987601,".","G","A","0/1","0/0",69.2,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC113785975-exon-XR_003471766.1-1|LOC113785975-GENE_exon-XR_003471766.1-1|intergenic_region|LOC113785975-GENE_exon-XR_003471766.1-1|||n.13987601G>A||||||;BaseQRankSum=2.84;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=13.424;MLEAC=1;MLEAF=0.250;MQ=50.08;MQRankSum=-2.838e+00;QD=5.77;ReadPosRankSum=2.84;SOR=2.781;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",14192128,".","C","T","0/0","0/1",170.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|synonymous_variant|LOW|exon-XM_004492122.3-1|GENE_exon-XM_004492122.3-1|transcript|rna-XM_004492122.3|protein_coding|1/1|c.744C>T|p.Asn248Asn|805/1143|744/849|248/282||,T|non_coding_transcript_variant|MODIFIER|LOC101497919|gene-LOC101497919|transcript|XM_004492122.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-4.220e-01;ClippingRankSum=0.00;DP=106;ExcessHet=3.0103;FS=3.782;MLEAC=1;MLEAF=0.250;MQ=59.33;MQRankSum=-3.416e+00;QD=3.34;ReadPosRankSum=-6.520e-01;SOR=1.450;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",14437198,".","T","A","0/0","0/1",134.37,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101498908|gene-LOC101498908|transcript|XM_004492124.3|protein_coding||c.-1349T>A|||||772|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004492124.3-1|GENE_exon-XM_004492124.3-1|transcript|rna-XM_004492124.3|protein_coding||c.-778T>A|||||772|,A|upstream_gene_variant|MODIFIER|exon-XR_003472043.1-1|GENE_exon-XR_003472043.1-1|transcript|rna-XR_003472043.1|pseudogene||n.-2287T>A|||||2287|,A|downstream_gene_variant|MODIFIER|LOC101504131|gene-LOC101504131|transcript|XM_004492140.1|protein_coding||c.*6756T>A|||||3288|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004492140.1-1|GENE_exon-XM_004492140.1-1|transcript|rna-XM_004492140.1|protein_coding||c.*3288T>A|||||3288|,A|intron_variant|MODIFIER|exon-XM_027332867.1-1|GENE_exon-XM_027332867.1-1|transcript|rna-XM_027332867.1|protein_coding|4/4|c.*79-48T>A||||||,A|non_coding_transcript_variant|MODIFIER|LOC105851762|gene-LOC105851762|transcript|XM_027332867.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=0.943;ClippingRankSum=0.00;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=55.60;MQRankSum=-5.041e+00;QD=2.69;ReadPosRankSum=0.893;SOR=0.804;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",14873418,".","C","T","0/1","1/1",2631.19,"MQ40;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_003471775.1-1-exon-XM_027332424.1-1|GENE_exon-XR_003471775.1-1-GENE_exon-XM_027332424.1-1|intergenic_region|GENE_exon-XR_003471775.1-1-GENE_exon-XM_027332424.1-1|||n.14873418C>T||||||;BaseQRankSum=3.15;ClippingRankSum=0.00;DP=65;ExcessHet=3.0103;FS=2.226;MLEAC=3;MLEAF=0.750;MQ=23.31;MQRankSum=4.46;QD=29.54;ReadPosRankSum=2.73;SOR=1.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",14895318,".","G","T","1/1","0/1",1050.86,"MQ40;map;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_003471775.1-1-exon-XM_027332424.1-1|GENE_exon-XR_003471775.1-1-GENE_exon-XM_027332424.1-1|intergenic_region|GENE_exon-XR_003471775.1-1-GENE_exon-XM_027332424.1-1|||n.14895318G>T||||||;BaseQRankSum=3.24;ClippingRankSum=0.00;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=22.72;MQRankSum=3.12;QD=32.84;ReadPosRankSum=0.463;SOR=0.495;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",14919917,".","C","T","0/0","0/1",486.87,"MQ40;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_003471775.1-1-exon-XM_027332424.1-1|GENE_exon-XR_003471775.1-1-GENE_exon-XM_027332424.1-1|intergenic_region|GENE_exon-XR_003471775.1-1-GENE_exon-XM_027332424.1-1|||n.14919917C>T||||||;BaseQRankSum=1.19;ClippingRankSum=0.00;DP=50;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=34.11;MQRankSum=-1.327e+00;QD=20.29;ReadPosRankSum=-3.158e+00;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",15048240,".","T","C","0/0","0/1",119.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101506708|gene-LOC101506708|transcript|XM_004492145.1|protein_coding||c.-4104T>C|||||1788|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004492145.1-1|GENE_exon-XM_004492145.1-1|transcript|rna-XM_004492145.1|protein_coding||c.-1788T>C|||||1788|,C|intergenic_region|MODIFIER|exon-XR_003472036.1-1-exon-XM_004492145.1-1|GENE_exon-XR_003472036.1-1-GENE_exon-XM_004492145.1-1|intergenic_region|GENE_exon-XR_003472036.1-1-GENE_exon-XM_004492145.1-1|||n.15048240T>C||||||;BaseQRankSum=-2.636e+00;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.250;MQ=50.51;MQRankSum=-8.040e-01;QD=1.81;ReadPosRankSum=1.67;SOR=1.117;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021162.1",15231625,".","A","T","0/1","1/1",1074.96,"MQ40;map;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004492154.3-1-exon-XM_012713493.2-1|GENE_exon-XM_004492154.3-1-GENE_exon-XM_012713493.2-1|intergenic_region|GENE_exon-XM_004492154.3-1-GENE_exon-XM_012713493.2-1|||n.15231625A>T||||||;BaseQRankSum=-2.942e+00;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=18.359;MLEAC=4;MLEAF=1.00;MQ=34.41;MQRankSum=1.96;QD=21.50;ReadPosRankSum=-8.170e-01;SOR=2.485;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",15655308,".","G","A","0/1","0/0",31.21,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC101497035-LOC101513665|LOC101497035-LOC101513665|intergenic_region|LOC101497035-LOC101513665|||n.15655308G>A||||||;BaseQRankSum=4.47;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=12.302;MLEAC=1;MLEAF=0.250;MQ=65.91;MQRankSum=-6.106e+00;QD=0.80;ReadPosRankSum=1.69;SOR=0.906;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021162.1",16138352,".","T","TTATATATATATATATATATATATATA","0/0","0/1",330.15,"PASS","AC=1;AF=0.250;AN=4;ANN=TTATATATATATATATATATATATATA|intergenic_region|MODIFIER|exon-XM_027332297.1-1-exon-XR_189501.3-1|GENE_exon-XM_027332297.1-1-GENE_exon-XR_189501.3-1|intergenic_region|GENE_exon-XM_027332297.1-1-GENE_exon-XR_189501.3-1|||n.16138352_16138353insTATATATATATATATATATATATATA||||||;BaseQRankSum=-1.149e+00;ClippingRankSum=0.00;DP=112;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.250;MQ=59.62;MQRankSum=-5.939e+00;QD=7.50;ReadPosRankSum=-2.798e+00;SOR=0.771;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021162.1",16857657,".","T","C","0/1","0/0",101.87,"QD2","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|LOC101515403|gene-LOC101515403|transcript|XM_004492238.1|protein_coding||c.*4504T>C|||||3986|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004492238.1-1|GENE_exon-XM_004492238.1-1|transcript|rna-XM_004492238.1|protein_coding||c.*3986T>C|||||3986|,C|intergenic_region|MODIFIER|exon-XM_004492238.1-1-exon-XM_004492209.3-1|GENE_exon-XM_004492238.1-1-GENE_exon-XM_004492209.3-1|intergenic_region|GENE_exon-XM_004492238.1-1-GENE_exon-XM_004492209.3-1|||n.16857657T>C||||||;BaseQRankSum=-2.736e+00;ClippingRankSum=0.00;DP=155;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.24;MQRankSum=-8.634e+00;QD=1.34;ReadPosRankSum=-2.091e+00;SOR=0.585;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",17218010,".","T","C","0/1","0/0",126.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004492256.2-1|GENE_exon-XM_004492256.2-1|transcript|rna-XM_004492256.2|protein_coding||c.-4513A>G|||||4513|,C|downstream_gene_variant|MODIFIER|LOC101493603|gene-LOC101493603|transcript|XM_004492256.2|protein_coding||c.*6927T>C|||||4513|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004492256.2-1-exon-XM_027332772.1-1|GENE_exon-XM_004492256.2-1-GENE_exon-XM_027332772.1-1|intergenic_region|GENE_exon-XM_004492256.2-1-GENE_exon-XM_027332772.1-1|||n.17218010T>C||||||;BaseQRankSum=-2.113e+00;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=8.255;MLEAC=1;MLEAF=0.250;MQ=56.40;MQRankSum=-4.653e+00;QD=3.32;ReadPosRankSum=0.889;SOR=2.985;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021162.1",19454440,".","A","G","0/0","0/1",312.87,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004492379.3-1|GENE_exon-XM_004492379.3-1|transcript|rna-XM_004492379.3|protein_coding||c.-4878T>C|||||3358|,G|upstream_gene_variant|MODIFIER|exon-XM_004492378.3-1|GENE_exon-XM_004492378.3-1|transcript|rna-XM_004492378.3|protein_coding||c.-3506T>C|||||3356|,G|downstream_gene_variant|MODIFIER|LOC101510878|gene-LOC101510878|transcript|XM_004492378.3|protein_coding||c.*18941A>G|||||3356|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101510878|gene-LOC101510878|transcript|XM_004492379.3|protein_coding||c.*18941A>G|||||3358|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004492378.3-1-exon-XM_004492381.3-1|GENE_exon-XM_004492378.3-1-GENE_exon-XM_004492381.3-1|intergenic_region|GENE_exon-XM_004492378.3-1-GENE_exon-XM_004492381.3-1|||n.19454440A>G||||||;BaseQRankSum=-2.853e+00;ClippingRankSum=0.00;DP=33;ExcessHet=3.9794;FS=4.200;MLEAC=2;MLEAF=0.500;MQ=50.13;MQRankSum=-4.481e+00;QD=14.22;ReadPosRankSum=-1.107e+00;SOR=1.863;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",19637972,".","T","TAA","1/1","0/1",795.15,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=TAA|intergenic_region|MODIFIER|exon-XM_004492392.3-1-exon-XM_004492393.3-1|GENE_exon-XM_004492392.3-1-GENE_exon-XM_004492393.3-1|intergenic_region|GENE_exon-XM_004492392.3-1-GENE_exon-XM_004492393.3-1|||n.19637972_19637973insAA||||||;BaseQRankSum=0.140;ClippingRankSum=0.00;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=22.71;MQRankSum=2.20;QD=32.01;ReadPosRankSum=0.549;SOR=0.473;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",19704978,".","T","A","0/1","1/1",10383.19,"MQ40;SB60SNV","AC=3;AF=0.750;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004492393.3-1-exon-XM_004492394.3-1|GENE_exon-XM_004492393.3-1-GENE_exon-XM_004492394.3-1|intergenic_region|GENE_exon-XM_004492393.3-1-GENE_exon-XM_004492394.3-1|||n.19704978T>A||||||;BaseQRankSum=0.652;ClippingRankSum=0.00;DP=389;ExcessHet=3.0103;FS=100.071;MLEAC=3;MLEAF=0.750;MQ=37.93;MQRankSum=-1.380e+00;QD=26.97;ReadPosRankSum=1.45;SOR=2.118;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021162.1",20438578,".","G","A","0/1","0/0",48.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004492455.3-1-exon-XM_027332887.1-1|GENE_exon-XM_004492455.3-1-GENE_exon-XM_027332887.1-1|intergenic_region|GENE_exon-XM_004492455.3-1-GENE_exon-XM_027332887.1-1|||n.20438578G>A||||||;BaseQRankSum=2.49;ClippingRankSum=0.00;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.06;MQRankSum=-4.845e+00;QD=0.55;ReadPosRankSum=0.399;SOR=0.576;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",20734020,".","C","T","0/0","0/1",21.22,"MQ40;QD2;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XR_003472035.1-1|GENE_exon-XR_003472035.1-1|transcript|rna-XR_003472035.1|pseudogene|1/1|n.143+333G>A||||||,T|intragenic_variant|MODIFIER|LOC113785852|gene-LOC113785852|gene_variant|gene-LOC113785852|||n.20734020C>T||||||;BaseQRankSum=-4.330e-01;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=31.35;MQRankSum=-1.667e+00;QD=1.33;ReadPosRankSum=-6.700e-02;SOR=0.693;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",21069459,".","T","A","0/1","0/0",281.47,"PASS","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|exon-XR_003472018.1-1|GENE_exon-XR_003472018.1-1|transcript|rna-XR_003472018.1|pseudogene||n.*4400A>T|||||4400|,A|intron_variant|MODIFIER|exon-XM_027332443.1-1|GENE_exon-XM_027332443.1-1|transcript|rna-XM_027332443.1|protein_coding|6/6|c.*49-27T>A||||||,A|intron_variant|MODIFIER|exon-XR_003471820.1-1|GENE_exon-XR_003471820.1-1|transcript|rna-XR_003471820.1|pseudogene|6/8|n.908-272T>A||||||,A|non_coding_transcript_variant|MODIFIER|LOC101492734|gene-LOC101492734|transcript|XM_027332443.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101492734|gene-LOC101492734|transcript|XR_003471820.1|pseudogene||||||||;BaseQRankSum=-1.047e+00;ClippingRankSum=0.00;DP=140;ExcessHet=3.0103;FS=27.687;MLEAC=1;MLEAF=0.250;MQ=56.55;MQRankSum=-6.744e+00;QD=3.80;ReadPosRankSum=0.762;SOR=4.976;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",21420875,".","A","C","0/0","0/1",125.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XR_003471821.1-1|GENE_exon-XR_003471821.1-1|transcript|rna-XR_003471821.1|pseudogene|1/1|n.2394-329T>G||||||,C|intragenic_variant|MODIFIER|LOC113785705|gene-LOC113785705|gene_variant|gene-LOC113785705|||n.21420875A>C||||||;BaseQRankSum=0.479;ClippingRankSum=0.00;DP=129;ExcessHet=3.0103;FS=8.436;MLEAC=1;MLEAF=0.250;MQ=59.07;MQRankSum=-4.191e+00;QD=2.55;ReadPosRankSum=-1.414e+00;SOR=2.935;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",23130627,".","T","C","0/0","0/1",161.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|LOC101507257|gene-LOC101507257|transcript|XM_004492686.3|protein_coding||c.*6880T>C|||||1627|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004492686.3-1|GENE_exon-XM_004492686.3-1|transcript|rna-XM_004492686.3|protein_coding||c.*1894T>C|||||1627|,C|downstream_gene_variant|MODIFIER|exon-XM_004492687.3-1|GENE_exon-XM_004492687.3-1|transcript|rna-XM_004492687.3|protein_coding||c.*1894T>C|||||1627|,C|downstream_gene_variant|MODIFIER|LOC101507257|gene-LOC101507257|transcript|XM_004492687.3|protein_coding||c.*6880T>C|||||1627|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004492686.3-1-exon-XM_004492688.3-1|GENE_exon-XM_004492686.3-1-GENE_exon-XM_004492688.3-1|intergenic_region|GENE_exon-XM_004492686.3-1-GENE_exon-XM_004492688.3-1|||n.23130627T>C||||||;BaseQRankSum=-4.821e+00;ClippingRankSum=0.00;DP=124;ExcessHet=3.0103;FS=7.079;MLEAC=1;MLEAF=0.250;MQ=59.05;MQRankSum=-4.255e+00;QD=1.90;ReadPosRankSum=1.40;SOR=1.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021162.1",23432912,".","A","G","0/1","0/0",56.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004492974.3-1-exon-XM_004492720.3-1|GENE_exon-XM_004492974.3-1-GENE_exon-XM_004492720.3-1|intergenic_region|GENE_exon-XM_004492974.3-1-GENE_exon-XM_004492720.3-1|||n.23432912A>G||||||;BaseQRankSum=-5.109e+00;ClippingRankSum=0.00;DP=273;ExcessHet=3.0103;FS=24.834;MLEAC=1;MLEAF=0.250;MQ=56.65;MQRankSum=-6.750e+00;QD=0.37;ReadPosRankSum=0.939;SOR=4.428;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",23795268,".","C","T","0/0","0/1",37.19,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_012713724.2-1|GENE_exon-XM_012713724.2-1|transcript|rna-XM_012713724.2|protein_coding|5/13|c.768+2158C>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC101502312|gene-LOC101502312|transcript|XM_012713724.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.24;ClippingRankSum=0.00;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=4.65;ReadPosRankSum=0.619;SOR=0.693;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",24379796,".","T","C","0/0","0/1",95.87,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004492833.3-1-exon-XM_012713672.2-1|GENE_exon-XM_004492833.3-1-GENE_exon-XM_012713672.2-1|intergenic_region|GENE_exon-XM_004492833.3-1-GENE_exon-XM_012713672.2-1|||n.24379796T>C||||||;BaseQRankSum=-1.689e+00;ClippingRankSum=0.00;DP=47;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=45.78;MQRankSum=0.898;QD=3.83;ReadPosRankSum=0.00;SOR=0.593;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",24796617,".","G","C","0/0","0/1",492.19,"BQB","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC113785767|gene-LOC113785767|transcript|XM_027332633.1|protein_coding||c.-4533G>C|||||3505|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_027332633.1-1|GENE_exon-XM_027332633.1-1|transcript|rna-XM_027332633.1|protein_coding||c.*3505C>G|||||3505|WARNING_TRANSCRIPT_NO_START_CODON,C|intron_variant|MODIFIER|exon-XM_012713656.2-1|GENE_exon-XM_012713656.2-1|transcript|rna-XM_012713656.2|protein_coding|2/4|c.-87-720C>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101507260|gene-LOC101507260|transcript|XM_012713656.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.81;ClippingRankSum=0.00;DP=507;ExcessHet=3.0103;FS=6.336;MLEAC=1;MLEAF=0.250;MQ=58.27;MQRankSum=-3.903e+00;QD=2.22;ReadPosRankSum=-4.940e-01;SOR=1.218;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
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["NC_021162.1",28186193,".","A","G","0/1","0/0",88.02,"MQ40;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_027332909.1-1|GENE_exon-XM_027332909.1-1|transcript|rna-XM_027332909.1|protein_coding|1/1|c.100-3370A>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC113785825|gene-LOC113785825|transcript|XM_027332909.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-2.650e+00;ClippingRankSum=0.00;DP=35;ExcessHet=3.0103;FS=18.325;MLEAC=1;MLEAF=0.250;MQ=28.90;MQRankSum=1.44;QD=5.18;ReadPosRankSum=-1.042e+00;SOR=3.224;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",28783947,".","T","G","0/0","0/1",82.2,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101489386|gene-LOC101489386|transcript|XM_004493648.3|protein_coding||c.*2067T>G|||||1394|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004493648.3-1|GENE_exon-XM_004493648.3-1|transcript|rna-XM_004493648.3|protein_coding||c.*1547T>G|||||1394|,G|intergenic_region|MODIFIER|exon-XM_004493648.3-1-exon-XM_004493362.3-1|GENE_exon-XM_004493648.3-1-GENE_exon-XM_004493362.3-1|intergenic_region|GENE_exon-XM_004493648.3-1-GENE_exon-XM_004493362.3-1|||n.28783947T>G||||||;BaseQRankSum=-5.100e-01;ClippingRankSum=0.00;DP=53;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.250;MQ=47.33;MQRankSum=-2.967e+00;QD=2.94;ReadPosRankSum=-1.424e+00;SOR=0.392;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021162.1",30561307,".","TTTG","T","0/0","0/1",401.15,"PASS","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|LOC101504457|gene-LOC101504457|transcript|XM_004493610.3|protein_coding||c.*6677_*6679delTTG|||||3652|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004493610.3-1|GENE_exon-XM_004493610.3-1|transcript|rna-XM_004493610.3|protein_coding||c.*3789_*3791delTTG|||||3652|,T|intergenic_region|MODIFIER|exon-XM_004493610.3-1-exon-XM_012713814.2-1|GENE_exon-XM_004493610.3-1-GENE_exon-XM_012713814.2-1|intergenic_region|GENE_exon-XM_004493610.3-1-GENE_exon-XM_012713814.2-1|||n.30561308_30561310delTTG||||||;BaseQRankSum=0.836;ClippingRankSum=0.00;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.54;MQRankSum=-8.306e+00;QD=5.65;ReadPosRankSum=-3.704e+00;SOR=0.756;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",31600656,".","T","A","0/0","0/1",66.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004493819.3-1|GENE_exon-XM_004493819.3-1|transcript|rna-XM_004493819.3|protein_coding|1/2|c.127-27A>T||||||,A|intron_variant|MODIFIER|exon-XM_027332244.1-1|GENE_exon-XM_027332244.1-1|transcript|rna-XM_027332244.1|protein_coding|1/2|c.263+64A>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101490371|gene-LOC101490371|transcript|XM_004493819.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101490371|gene-LOC101490371|transcript|XM_027332244.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=0.662;ClippingRankSum=0.00;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=48.30;MQRankSum=-2.152e+00;QD=2.36;ReadPosRankSum=-2.347e+00;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",33334728,".","A","G","0/0","0/1",69.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_012713990.2-1-exon-XM_004493955.3-1|GENE_exon-XM_012713990.2-1-GENE_exon-XM_004493955.3-1|intergenic_region|GENE_exon-XM_012713990.2-1-GENE_exon-XM_004493955.3-1|||n.33334728A>G||||||;BaseQRankSum=-8.270e-01;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=48.12;MQRankSum=-3.592e+00;QD=1.87;ReadPosRankSum=1.54;SOR=0.641;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",34085894,".","C","A","0/0","0/1",209.19,"PASS","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004493993.3-1-exon-XM_004494002.3-1|GENE_exon-XM_004493993.3-1-GENE_exon-XM_004494002.3-1|intergenic_region|GENE_exon-XM_004493993.3-1-GENE_exon-XM_004494002.3-1|||n.34085894C>A||||||;BaseQRankSum=2.82;ClippingRankSum=0.00;DP=110;ExcessHet=3.0103;FS=42.062;MLEAC=1;MLEAF=0.250;MQ=56.23;MQRankSum=-8.018e+00;QD=3.17;ReadPosRankSum=0.213;SOR=4.798;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",34487633,".","TAG","T","0/1","0/0",60.33,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|splice_acceptor_variant&intron_variant|HIGH|LOC113785828|LOC113785828|transcript|gene-LOC113785828|pseudogene|1/2|n.27-2_27-1delAG||||||,T|upstream_gene_variant|MODIFIER|LOC113785829|LOC113785829|transcript|gene-LOC113785829|pseudogene||n.-761_-760delAG|||||761|,T|downstream_gene_variant|MODIFIER|LOC101509389|LOC101509389|transcript|gene-LOC101509389|pseudogene||n.*4021_*4022delAG|||||4021|,T|downstream_gene_variant|MODIFIER|LOC101509712|LOC101509712|transcript|gene-LOC101509712|pseudogene||n.*1707_*1708delAG|||||1707|;BaseQRankSum=0.108;ClippingRankSum=0.00;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=53.95;MQRankSum=-2.838e+00;QD=5.03;ReadPosRankSum=2.74;SOR=0.582;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",36906226,".","A","G","0/0","0/1",354.26,"PASS","AC=1;AF=0.250;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_027332360.1-1|GENE_exon-XM_027332360.1-1|transcript|rna-XM_027332360.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|504/1777|415/1407|139/468||,G|missense_variant|MODERATE|exon-XM_027332362.1-1|GENE_exon-XM_027332362.1-1|transcript|rna-XM_027332362.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|504/1771|415/1401|139/466||,G|missense_variant|MODERATE|exon-XM_027332363.1-1|GENE_exon-XM_027332363.1-1|transcript|rna-XM_027332363.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|504/1765|415/1395|139/464||,G|missense_variant|MODERATE|exon-XM_027332366.1-1|GENE_exon-XM_027332366.1-1|transcript|rna-XM_027332366.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|504/1699|415/1329|139/442||,G|missense_variant|MODERATE|exon-XM_027332370.1-1|GENE_exon-XM_027332370.1-1|transcript|rna-XM_027332370.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|504/1675|415/1305|139/434||,G|missense_variant|MODERATE|exon-XM_027332359.1-1|GENE_exon-XM_027332359.1-1|transcript|rna-XM_027332359.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|503/1776|415/1407|139/468||,G|missense_variant|MODERATE|exon-XM_027332361.1-1|GENE_exon-XM_027332361.1-1|transcript|rna-XM_027332361.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|503/1770|415/1401|139/466||,G|missense_variant|MODERATE|exon-XM_027332364.1-1|GENE_exon-XM_027332364.1-1|transcript|rna-XM_027332364.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|503/1752|415/1383|139/460||,G|missense_variant|MODERATE|exon-XM_027332365.1-1|GENE_exon-XM_027332365.1-1|transcript|rna-XM_027332365.1|protein_coding|2/6|c.415A>G|p.Arg139Gly|503/1698|415/1329|139/442||,G|missense_variant|MODERATE|exon-XM_027332368.1-1|GENE_exon-XM_027332368.1-1|transcript|rna-XM_027332368.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|503/1686|415/1317|139/438||,G|missense_variant|MODERATE|exon-XM_027332369.1-1|GENE_exon-XM_027332369.1-1|transcript|rna-XM_027332369.1|protein_coding|2/5|c.313A>G|p.Arg105Gly|401/1674|313/1305|105/434||,G|missense_variant|MODERATE|exon-XM_027332371.1-1|GENE_exon-XM_027332371.1-1|transcript|rna-XM_027332371.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|503/1632|415/1263|139/420||,G|missense_variant|MODERATE|exon-XM_027332372.1-1|GENE_exon-XM_027332372.1-1|transcript|rna-XM_027332372.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|503/1626|415/1257|139/418||,G|missense_variant|MODERATE|exon-XM_027332373.1-1|GENE_exon-XM_027332373.1-1|transcript|rna-XM_027332373.1|protein_coding|2/5|c.415A>G|p.Arg139Gly|503/1602|415/1233|139/410||,G|missense_variant|MODERATE|exon-XM_027332374.1-1|GENE_exon-XM_027332374.1-1|transcript|rna-XM_027332374.1|protein_coding|2/4|c.415A>G|p.Arg139Gly|503/1578|415/1209|139/402||,G|missense_variant|MODERATE|exon-XM_027332375.1-1|GENE_exon-XM_027332375.1-1|transcript|rna-XM_027332375.1|protein_coding|2/4|c.415A>G|p.Arg139Gly|503/1554|415/1185|139/394||,G|missense_variant|MODERATE|exon-XM_027332376.1-1|GENE_exon-XM_027332376.1-1|transcript|rna-XM_027332376.1|protein_coding|2/4|c.415A>G|p.Arg139Gly|503/1548|415/1179|139/392||,G|missense_variant|MODERATE|exon-XM_027332377.1-1|GENE_exon-XM_027332377.1-1|transcript|rna-XM_027332377.1|protein_coding|2/4|c.415A>G|p.Arg139Gly|503/1548|415/1179|139/392||,G|missense_variant|MODERATE|exon-XM_027332378.1-1|GENE_exon-XM_027332378.1-1|transcript|rna-XM_027332378.1|protein_coding|2/4|c.415A>G|p.Arg139Gly|503/1542|415/1173|139/390||,G|missense_variant|MODERATE|exon-XM_027332379.1-1|GENE_exon-XM_027332379.1-1|transcript|rna-XM_027332379.1|protein_coding|2/4|c.415A>G|p.Arg139Gly|503/1524|415/1155|139/384||,G|downstream_gene_variant|MODIFIER|LOC101503824|gene-LOC101503824|transcript|XM_004494376.3|protein_coding||c.*19863A>G|||||1997|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004494376.3-1|GENE_exon-XM_004494376.3-1|transcript|rna-XM_004494376.3|protein_coding||c.*2391A>G|||||1997|,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332359.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332360.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332362.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332363.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332366.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332370.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332361.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332364.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332365.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332368.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332369.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332371.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332372.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332373.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332374.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332375.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332376.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332377.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332378.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101504141|gene-LOC101504141|transcript|XM_027332379.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.62;ClippingRankSum=0.00;DP=85;ExcessHet=3.0103;FS=7.720;MLEAC=1;MLEAF=0.250;MQ=55.80;MQRankSum=-5.658e+00;QD=9.57;ReadPosRankSum=-3.185e+00;SOR=1.760;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021162.1",37808914,".","TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA","T","0/0","1/1",1062.43,"mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101514664|gene-LOC101514664|transcript|XM_004494501.3|protein_coding||c.-10541_-10484delAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA|||||3226|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004494501.3-1|GENE_exon-XM_004494501.3-1|transcript|rna-XM_004494501.3|protein_coding||c.-3559_-3502delAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA|||||3226|,T|intergenic_region|MODIFIER|exon-XM_004494500.3-1-exon-XM_004494501.3-1|GENE_exon-XM_004494500.3-1-GENE_exon-XM_004494501.3-1|intergenic_region|GENE_exon-XM_004494500.3-1-GENE_exon-XM_004494501.3-1|||n.37808915_37808972delAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA||||||;BaseQRankSum=-1.467e+00;ClippingRankSum=0.00;DP=41;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=42.50;MQRankSum=-1.713e+00;QD=32.15;ReadPosRankSum=0.514;SOR=0.749;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021163.1",12486045,".","T","G","0/0","0/1",81.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101499257|gene-LOC101499257|transcript|XM_012714736.2|protein_coding||c.-7119T>G|||||1916|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004496514.3-1|GENE_exon-XM_004496514.3-1|transcript|rna-XM_004496514.3|protein_coding||c.-2085T>G|||||1965|,G|upstream_gene_variant|MODIFIER|LOC101498730|gene-LOC101498730|transcript|XM_004496513.3|protein_coding||c.-2815T>G|||||1990|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004496513.3-1|GENE_exon-XM_004496513.3-1|transcript|rna-XM_004496513.3|protein_coding||c.-2085T>G|||||1990|,G|upstream_gene_variant|MODIFIER|LOC101499257|gene-LOC101499257|transcript|XM_012714737.2|protein_coding||c.-7119T>G|||||1916|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101499257|gene-LOC101499257|transcript|XM_027333681.1|protein_coding||c.-7119T>G|||||1916|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101499257|gene-LOC101499257|transcript|XM_027333680.1|protein_coding||c.-7120T>G|||||1942|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101498730|gene-LOC101498730|transcript|XM_004496514.3|protein_coding||c.-2815T>G|||||1965|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101499257|gene-LOC101499257|transcript|XM_027333682.1|protein_coding||c.-7119T>G|||||3058|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012714736.2-1|GENE_exon-XM_012714736.2-1|transcript|rna-XM_012714736.2|protein_coding||c.*5276A>C|||||1916|,G|downstream_gene_variant|MODIFIER|exon-XM_012714737.2-1|GENE_exon-XM_012714737.2-1|transcript|rna-XM_012714737.2|protein_coding||c.*5276A>C|||||1916|,G|downstream_gene_variant|MODIFIER|exon-XM_027333681.1-1|GENE_exon-XM_027333681.1-1|transcript|rna-XM_027333681.1|protein_coding||c.*5276A>C|||||1916|,G|downstream_gene_variant|MODIFIER|exon-XM_027333680.1-1|GENE_exon-XM_027333680.1-1|transcript|rna-XM_027333680.1|protein_coding||c.*5276A>C|||||1942|,G|downstream_gene_variant|MODIFIER|exon-XM_027333682.1-1|GENE_exon-XM_027333682.1-1|transcript|rna-XM_027333682.1|protein_coding||c.*5276A>C|||||3058|,G|intron_variant|MODIFIER|exon-XM_012714652.2-1|GENE_exon-XM_012714652.2-1|transcript|rna-XM_012714652.2|protein_coding|2/2|c.2679-739T>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101498390|gene-LOC101498390|transcript|XM_012714652.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.805e+00;ClippingRankSum=0.00;DP=47;ExcessHet=3.0103;FS=11.383;MLEAC=1;MLEAF=0.250;MQ=49.05;MQRankSum=-1.773e+00;QD=3.69;ReadPosRankSum=1.88;SOR=0.012;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021163.1",13496204,".","T","TAATAATAATA","0/0","0/1",61.15,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=TAATAATAATA|upstream_gene_variant|MODIFIER|LOC101509287|gene-LOC101509287|transcript|XM_004496643.3|protein_coding||c.-9858_-9857insAATAATAATA|||||4390|WARNING_TRANSCRIPT_NO_START_CODON,TAATAATAATA|upstream_gene_variant|MODIFIER|exon-XM_004496643.3-1|GENE_exon-XM_004496643.3-1|transcript|rna-XM_004496643.3|protein_coding||c.-5012_-5011insAATAATAATA|||||4390|,TAATAATAATA|upstream_gene_variant|MODIFIER|exon-XM_004496644.3-1|GENE_exon-XM_004496644.3-1|transcript|rna-XM_004496644.3|protein_coding||c.-5012_-5011insAATAATAATA|||||4677|,TAATAATAATA|upstream_gene_variant|MODIFIER|LOC101509287|gene-LOC101509287|transcript|XM_004496644.3|protein_coding||c.-9858_-9857insAATAATAATA|||||4677|WARNING_TRANSCRIPT_NO_START_CODON,TAATAATAATA|intergenic_region|MODIFIER|exon-XM_004496641.2-1-exon-XM_004496643.3-1|GENE_exon-XM_004496641.2-1-GENE_exon-XM_004496643.3-1|intergenic_region|GENE_exon-XM_004496641.2-1-GENE_exon-XM_004496643.3-1|||n.13496204_13496205insAATAATAATA||||||;BaseQRankSum=0.019;ClippingRankSum=0.00;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.15;MQRankSum=-1.381e+00;QD=4.37;ReadPosRankSum=-1.675e+00;SOR=0.905;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021163.1",15593179,".","C","T","0/1","1/1",1138.98,"map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004496969.3-1|GENE_exon-XM_004496969.3-1|transcript|rna-XM_004496969.3|protein_coding||c.-1542G>A|||||1343|,T|upstream_gene_variant|MODIFIER|LOC105851895|gene-LOC105851895|transcript|XM_012714761.2|protein_coding||c.-3371C>T|||||1137|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_012714761.2-1|GENE_exon-XM_012714761.2-1|transcript|rna-XM_012714761.2|protein_coding||c.-1218C>T|||||1137|,T|downstream_gene_variant|MODIFIER|LOC101506625|gene-LOC101506625|transcript|XM_004496969.3|protein_coding||c.*7469C>T|||||1343|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004496969.3-1-exon-XM_012714761.2-1|GENE_exon-XM_004496969.3-1-GENE_exon-XM_012714761.2-1|intergenic_region|GENE_exon-XM_004496969.3-1-GENE_exon-XM_012714761.2-1|||n.15593179C>T||||||;BaseQRankSum=0.621;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=40.07;MQRankSum=2.36;QD=35.96;ReadPosRankSum=0.00;SOR=2.448;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021163.1",18650598,".","T","TTC","0/1","1/1",1111.22,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=TTC|downstream_gene_variant|MODIFIER|exon-XR_001143694.2-1|GENE_exon-XR_001143694.2-1|transcript|rna-XR_001143694.2|pseudogene||n.*3786_*3787insGA|||||3786|,TTC|intergenic_region|MODIFIER|exon-XM_004497323.3-1-exon-XR_001143694.2-1|GENE_exon-XM_004497323.3-1-GENE_exon-XR_001143694.2-1|intergenic_region|GENE_exon-XM_004497323.3-1-GENE_exon-XR_001143694.2-1|||n.18650598_18650599insTC||||||;BaseQRankSum=-1.436e+00;ClippingRankSum=0.00;DP=36;ExcessHet=3.0103;FS=11.964;MLEAC=3;MLEAF=0.750;MQ=39.01;MQRankSum=-1.185e+00;QD=33.28;ReadPosRankSum=2.20;SOR=1.114;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021163.1",20798542,".","T","A","0/0","0/1",156.87,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_027333195.1-1|GENE_exon-XM_027333195.1-1|transcript|rna-XM_027333195.1|protein_coding||c.-6321T>A|||||4854|,A|upstream_gene_variant|MODIFIER|exon-XM_027333196.1-1|GENE_exon-XM_027333196.1-1|transcript|rna-XM_027333196.1|protein_coding||c.-6321T>A|||||4854|,A|upstream_gene_variant|MODIFIER|exon-XM_027333197.1-1|GENE_exon-XM_027333197.1-1|transcript|rna-XM_027333197.1|protein_coding||c.-6321T>A|||||4854|,A|upstream_gene_variant|MODIFIER|exon-XM_027333198.1-1|GENE_exon-XM_027333198.1-1|transcript|rna-XM_027333198.1|protein_coding||c.-6321T>A|||||4854|,A|upstream_gene_variant|MODIFIER|exon-XM_027333199.1-1|GENE_exon-XM_027333199.1-1|transcript|rna-XM_027333199.1|protein_coding||c.-6321T>A|||||4854|,A|upstream_gene_variant|MODIFIER|exon-XM_027333200.1-1|GENE_exon-XM_027333200.1-1|transcript|rna-XM_027333200.1|protein_coding||c.-6321T>A|||||4854|,A|upstream_gene_variant|MODIFIER|LOC101488747|gene-LOC101488747|transcript|XM_027333195.1|protein_coding||c.-10443T>A|||||4854|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101488747|gene-LOC101488747|transcript|XM_027333196.1|protein_coding||c.-10443T>A|||||4854|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101488747|gene-LOC101488747|transcript|XM_027333197.1|protein_coding||c.-10443T>A|||||4854|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101488747|gene-LOC101488747|transcript|XM_027333198.1|protein_coding||c.-10443T>A|||||4854|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101488747|gene-LOC101488747|transcript|XM_027333199.1|protein_coding||c.-10443T>A|||||4854|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101488747|gene-LOC101488747|transcript|XM_027333200.1|protein_coding||c.-10443T>A|||||4854|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004497487.3-1-exon-XM_027333195.1-1|GENE_exon-XM_004497487.3-1-GENE_exon-XM_027333195.1-1|intergenic_region|GENE_exon-XM_004497487.3-1-GENE_exon-XM_027333195.1-1|||n.20798542T>A||||||;BaseQRankSum=2.00;ClippingRankSum=0.00;DP=33;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.55;MQRankSum=-3.175e+00;QD=11.20;ReadPosRankSum=-1.910e-01;SOR=0.458;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021163.1",33199240,".","T","A","0/0","0/1",543.19,"map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004497992.1-1-exon-XM_004497986.3-1|GENE_exon-XM_004497992.1-1-GENE_exon-XM_004497986.3-1|intergenic_region|GENE_exon-XM_004497992.1-1-GENE_exon-XM_004497986.3-1|||n.33199240T>A||||||;BaseQRankSum=-1.600e+00;ClippingRankSum=0.00;DP=387;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.250;MQ=50.91;MQRankSum=-3.898e+00;QD=2.44;ReadPosRankSum=1.27;SOR=0.785;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021163.1",33369674,".","C","A","0/0","0/1",58.19,"MQ40;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC105851970|LOC105851970|transcript|gene-LOC105851970|pseudogene||n.*1320G>T|||||1320|,A|intergenic_region|MODIFIER|LOC101498405-LOC105851970|LOC101498405-LOC105851970|intergenic_region|LOC101498405-LOC105851970|||n.33369674C>A||||||;BaseQRankSum=0.705;ClippingRankSum=0.00;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=39.69;MQRankSum=-2.983e+00;QD=3.42;ReadPosRankSum=-1.549e+00;SOR=0.120;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021163.1",33590854,".","T","A","0/1","0/0",59.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027333591.1-1-exon-XM_004497990.3-1|GENE_exon-XM_027333591.1-1-GENE_exon-XM_004497990.3-1|intergenic_region|GENE_exon-XM_027333591.1-1-GENE_exon-XM_004497990.3-1|||n.33590854T>A||||||;BaseQRankSum=-1.461e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.250;MQ=45.89;MQRankSum=-3.309e+00;QD=1.02;ReadPosRankSum=0.651;SOR=0.297;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021164.1",3390547,".","G","A","0/1","0/0",65.23,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004499402.2-1-exon-XM_004499388.3-1|GENE_exon-XM_004499402.2-1-GENE_exon-XM_004499388.3-1|intergenic_region|GENE_exon-XM_004499402.2-1-GENE_exon-XM_004499388.3-1|||n.3390547G>A||||||;BaseQRankSum=3.74;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=48.12;MQRankSum=-3.219e+00;QD=1.45;ReadPosRankSum=1.81;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021164.1",3715872,".","C","CATATATATAT","1/1","0/1",1482.15,"MQ40;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=CATATATATAT|intergenic_region|MODIFIER|exon-XM_004499389.3-1-exon-XM_004499404.3-1|GENE_exon-XM_004499389.3-1-GENE_exon-XM_004499404.3-1|intergenic_region|GENE_exon-XM_004499389.3-1-GENE_exon-XM_004499404.3-1|||n.3715872_3715873insATATATATAT||||||;BaseQRankSum=-1.906e+00;ClippingRankSum=0.00;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=30.44;MQRankSum=1.43;QD=30.45;ReadPosRankSum=-2.240e-01;SOR=1.112;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",4110875,".","G","A","0/1","0/0",14.12,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027334651.1-1-exon-XM_004499417.1-1|GENE_exon-XM_027334651.1-1-GENE_exon-XM_004499417.1-1|intergenic_region|GENE_exon-XM_027334651.1-1-GENE_exon-XM_004499417.1-1|||n.4110875G>A||||||;BaseQRankSum=0.967;ClippingRankSum=0.00;DP=16;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=42.36;MQRankSum=-9.670e-01;QD=4.71;ReadPosRankSum=0.967;SOR=0.223;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",4179277,".","A","AT","0/1","0/0",194.15,"PASS","AC=1;AF=0.250;AN=4;ANN=AT|intergenic_region|MODIFIER|exon-XM_027334651.1-1-exon-XM_004499417.1-1|GENE_exon-XM_027334651.1-1-GENE_exon-XM_004499417.1-1|intergenic_region|GENE_exon-XM_027334651.1-1-GENE_exon-XM_004499417.1-1|||n.4179277_4179278insT||||||;BaseQRankSum=3.76;ClippingRankSum=0.00;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=53.13;MQRankSum=-5.574e+00;QD=2.77;ReadPosRankSum=-2.994e+00;SOR=0.812;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",4255702,".","A","G","0/0","0/1",306.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003473084.1-1-exon-XM_027335109.1-1|GENE_exon-XR_003473084.1-1-GENE_exon-XM_027335109.1-1|intergenic_region|GENE_exon-XR_003473084.1-1-GENE_exon-XM_027335109.1-1|||n.4255702A>G||||||;BaseQRankSum=-1.805e+00;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.250;MQ=53.96;MQRankSum=-7.804e+00;QD=4.86;ReadPosRankSum=-8.580e-01;SOR=1.075;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021164.1",4609484,".","C","T","0/0","0/1",17.27,"QD2;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|LOC101490060-exon-XM_004499422.1-1|LOC101490060-GENE_exon-XM_004499422.1-1|intergenic_region|LOC101490060-GENE_exon-XM_004499422.1-1|||n.4609484C>T||||||;BaseQRankSum=-8.800e-02;ClippingRankSum=0.00;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.79;MQRankSum=-7.101e+00;QD=0.26;ReadPosRankSum=1.11;SOR=0.597;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021164.1",4708031,".","C","T","0/0","0/1",75.87,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004499420.3-1-LOC101492651|GENE_exon-XM_004499420.3-1-LOC101492651|intergenic_region|GENE_exon-XM_004499420.3-1-LOC101492651|||n.4708031C>T||||||;BaseQRankSum=2.06;ClippingRankSum=0.00;DP=79;ExcessHet=3.9794;FS=5.174;MLEAC=2;MLEAF=0.500;MQ=51.37;MQRankSum=-1.349e+00;QD=1.85;ReadPosRankSum=-1.775e+00;SOR=0.665;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",4713540,".","G","C","0/1","0/0",339.87,"MQ40","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004499420.3-1-LOC101492651|GENE_exon-XM_004499420.3-1-LOC101492651|intergenic_region|GENE_exon-XM_004499420.3-1-LOC101492651|||n.4713540G>C||||||;BaseQRankSum=-1.513e+00;ClippingRankSum=0.00;DP=159;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=33.15;MQRankSum=0.703;QD=5.66;ReadPosRankSum=-1.620e+00;SOR=0.602;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",4745075,".","C","G","0/1","1/1",1378.96,"MQ40;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004499420.3-1-LOC101492651|GENE_exon-XM_004499420.3-1-LOC101492651|intergenic_region|GENE_exon-XM_004499420.3-1-LOC101492651|||n.4745075C>G||||||;BaseQRankSum=-1.572e+00;ClippingRankSum=0.00;DP=36;ExcessHet=3.0103;FS=7.659;MLEAC=4;MLEAF=1.00;MQ=36.94;MQRankSum=1.84;QD=31.56;ReadPosRankSum=-7.530e-01;SOR=3.229;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",4768058,".","CTGAGGT","C,*","0/1","0/2",688.4,"MQ40;map;mrd15;mrd20;mrd30","AC=1,1;AF=0.250,0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004499420.3-1-LOC101492651|GENE_exon-XM_004499420.3-1-LOC101492651|intergenic_region|GENE_exon-XM_004499420.3-1-LOC101492651|||n.4768059_4768064delTGAGGT||||||;BaseQRankSum=-2.536e+00;ClippingRankSum=0.00;DP=30;ExcessHet=4.7712;FS=5.017;MLEAC=1,1;MLEAF=0.250,0.250;MQ=23.72;MQRankSum=-2.289e+00;QD=24.59;ReadPosRankSum=0.136;SOR=2.200;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",4907821,".","G","GA","0/1","0/0",114.15,"PASS","AC=1;AF=0.250;AN=4;ANN=GA|intergenic_region|MODIFIER|exon-XR_003472985.1-1-exon-XM_004499426.3-1|GENE_exon-XR_003472985.1-1-GENE_exon-XM_004499426.3-1|intergenic_region|GENE_exon-XR_003472985.1-1-GENE_exon-XM_004499426.3-1|||n.4907821_4907822insA||||||;BaseQRankSum=-2.820e-01;ClippingRankSum=0.00;DP=64;ExcessHet=3.0103;FS=5.225;MLEAC=1;MLEAF=0.250;MQ=53.01;MQRankSum=-4.415e+00;QD=3.80;ReadPosRankSum=-1.374e+00;SOR=0.086;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",5271991,".","T","C","0/0","0/1",243.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|synonymous_variant|LOW|exon-XM_012715478.1-1|GENE_exon-XM_012715478.1-1|transcript|rna-XM_012715478.1|protein_coding|2/2|c.699T>C|p.Pro233Pro|699/1296|699/1296|233/431||,C|non_coding_transcript_variant|MODIFIER|LOC105852043|gene-LOC105852043|transcript|XM_012715478.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.061e+00;ClippingRankSum=0.00;DP=181;ExcessHet=3.0103;FS=15.727;MLEAC=1;MLEAF=0.250;MQ=53.28;MQRankSum=-1.552e+00;QD=2.59;ReadPosRankSum=-5.720e-01;SOR=2.820;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021164.1",5706230,".","G","A","0/1","0/0",538.19,"BQB;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004499453.3-1-exon-XM_004499458.3-1|GENE_exon-XM_004499453.3-1-GENE_exon-XM_004499458.3-1|intergenic_region|GENE_exon-XM_004499453.3-1-GENE_exon-XM_004499458.3-1|||n.5706230G>A||||||;BaseQRankSum=9.22;ClippingRankSum=0.00;DP=357;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.250;MQ=47.21;MQRankSum=-2.177e+00;QD=2.76;ReadPosRankSum=-4.150e-01;SOR=0.810;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021164.1",5833091,".","T","A","0/1","0/0",18.3,"MQ40;QD2;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004499453.3-1-exon-XM_004499458.3-1|GENE_exon-XM_004499453.3-1-GENE_exon-XM_004499458.3-1|intergenic_region|GENE_exon-XM_004499453.3-1-GENE_exon-XM_004499458.3-1|||n.5833091T>A||||||;BaseQRankSum=0.390;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=38.58;MQRankSum=-1.017e+00;QD=1.31;ReadPosRankSum=1.92;SOR=0.892;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",6015432,".","G","A","0/0","0/1",80.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC101507717-exon-XM_004499459.3-1|LOC101507717-GENE_exon-XM_004499459.3-1|intergenic_region|LOC101507717-GENE_exon-XM_004499459.3-1|||n.6015432G>A||||||;BaseQRankSum=2.54;ClippingRankSum=0.00;DP=69;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.250;MQ=43.53;MQRankSum=-7.280e-01;QD=2.06;ReadPosRankSum=-3.000e+00;SOR=0.136;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",6264826,".","C","T","0/0","0/1",14.35,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|LOC101505125-exon-XM_027335009.1-1|LOC101505125-GENE_exon-XM_027335009.1-1|intergenic_region|LOC101505125-GENE_exon-XM_027335009.1-1|||n.6264826C>T||||||;BaseQRankSum=3.62;ClippingRankSum=0.00;DP=392;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.250;MQ=38.76;MQRankSum=-8.600e-02;QD=0.07;ReadPosRankSum=0.616;SOR=0.759;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",6443644,".","A","G","0/0","0/1",74.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101511558|LOC101511558|transcript|gene-LOC101511558|pseudogene||n.-1608A>G|||||1608|,G|downstream_gene_variant|MODIFIER|exon-XM_012715485.2-1|GENE_exon-XM_012715485.2-1|transcript|rna-XM_012715485.2|protein_coding||c.*1023A>G|||||699|,G|downstream_gene_variant|MODIFIER|LOC101507085|gene-LOC101507085|transcript|XM_004499464.3|protein_coding||c.*5880A>G|||||699|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004499464.3-1|GENE_exon-XM_004499464.3-1|transcript|rna-XM_004499464.3|protein_coding||c.*1023A>G|||||699|,G|downstream_gene_variant|MODIFIER|LOC101507085|gene-LOC101507085|transcript|XM_012715485.2|protein_coding||c.*6255A>G|||||699|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_012715485.2-1-LOC101511558|GENE_exon-XM_012715485.2-1-LOC101511558|intergenic_region|GENE_exon-XM_012715485.2-1-LOC101511558|||n.6443644A>G||||||;BaseQRankSum=-4.021e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.250;MQ=59.19;MQRankSum=-3.705e+00;QD=1.12;ReadPosRankSum=-1.895e+00;SOR=1.386;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021164.1",6630376,".","G","A","0/1","0/0",300.87,"PASS","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003472762.1-1-exon-XM_004499485.2-1|GENE_exon-XR_003472762.1-1-GENE_exon-XM_004499485.2-1|intergenic_region|GENE_exon-XR_003472762.1-1-GENE_exon-XM_004499485.2-1|||n.6630376G>A||||||;BaseQRankSum=3.49;ClippingRankSum=0.00;DP=118;ExcessHet=3.9794;FS=29.078;MLEAC=2;MLEAF=0.500;MQ=54.87;MQRankSum=-6.941e+00;QD=5.47;ReadPosRankSum=0.643;SOR=4.975;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",6662462,".","A","G","1/1","0/0",57.85,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003472762.1-1-exon-XM_004499485.2-1|GENE_exon-XR_003472762.1-1-GENE_exon-XM_004499485.2-1|intergenic_region|GENE_exon-XR_003472762.1-1-GENE_exon-XM_004499485.2-1|||n.6662462A>G||||||;DP=58;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=30.34;QD=28.93;SOR=2.303;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=1;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",6914300,".","T","C","1/1","0/1",678.19,"mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_012715495.1-1|GENE_exon-XM_012715495.1-1|transcript|rna-XM_012715495.1|protein_coding||c.-2390A>G|||||2390|,C|upstream_gene_variant|MODIFIER|LOC113786872|gene-LOC113786872|transcript|XR_003473178.1|snRNA||n.-193T>C|||||72|,C|upstream_gene_variant|MODIFIER|exon-XR_003473178.1-1|GENE_exon-XR_003473178.1-1|transcript|rna-XR_003473178.1|pseudogene||n.-72T>C|||||72|,C|upstream_gene_variant|MODIFIER|LOC113786867|gene-LOC113786867|transcript|XR_003473174.1|snRNA||n.-1246T>C|||||1127|,C|upstream_gene_variant|MODIFIER|exon-XR_003473174.1-1|GENE_exon-XR_003473174.1-1|transcript|rna-XR_003473174.1|pseudogene||n.-1127T>C|||||1127|,C|upstream_gene_variant|MODIFIER|LOC113786868|gene-LOC113786868|transcript|XR_003473175.1|snRNA||n.-2642T>C|||||2522|,C|upstream_gene_variant|MODIFIER|exon-XR_003473175.1-1|GENE_exon-XR_003473175.1-1|transcript|rna-XR_003473175.1|pseudogene||n.-2522T>C|||||2522|,C|downstream_gene_variant|MODIFIER|LOC101490721|gene-LOC101490721|transcript|XM_012715495.1|protein_coding||c.*10116T>C|||||2390|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC113786871|gene-LOC113786871|transcript|XR_003473177.1|snRNA||n.*135T>C|||||15|,C|downstream_gene_variant|MODIFIER|exon-XR_003473177.1-1|GENE_exon-XR_003473177.1-1|transcript|rna-XR_003473177.1|pseudogene||n.*15T>C|||||15|,C|intergenic_region|MODIFIER|exon-XR_003473177.1-1-exon-XR_003473178.1-1|GENE_exon-XR_003473177.1-1-GENE_exon-XR_003473178.1-1|intergenic_region|GENE_exon-XR_003473177.1-1-GENE_exon-XR_003473178.1-1|||n.6914300T>C||||||;BaseQRankSum=-3.190e-01;ClippingRankSum=0.00;DP=23;ExcessHet=3.0103;FS=4.771;MLEAC=3;MLEAF=0.750;MQ=45.58;MQRankSum=1.15;QD=28.85;ReadPosRankSum=-1.150e+00;SOR=1.598;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",7215778,".","G","T","0/1","0/0",15.84,"QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101515239|gene-LOC101515239|transcript|XM_004499478.3|protein_coding||c.-8793G>T|||||3141|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004499478.3-1|GENE_exon-XM_004499478.3-1|transcript|rna-XM_004499478.3|protein_coding||c.-5145G>T|||||3141|,T|upstream_gene_variant|MODIFIER|exon-XM_004499479.3-1|GENE_exon-XM_004499479.3-1|transcript|rna-XM_004499479.3|protein_coding||c.-5145G>T|||||3191|,T|upstream_gene_variant|MODIFIER|LOC101515239|gene-LOC101515239|transcript|XM_004499479.3|protein_coding||c.-8793G>T|||||3191|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-NM_001364906.1-1-exon-XM_004499478.3-1|GENE_exon-NM_001364906.1-1-GENE_exon-XM_004499478.3-1|intergenic_region|GENE_exon-NM_001364906.1-1-GENE_exon-XM_004499478.3-1|||n.7215778G>T||||||;BaseQRankSum=2.52;ClippingRankSum=0.00;DP=38;ExcessHet=3.0103;FS=9.672;MLEAC=1;MLEAF=0.250;MQ=52.86;MQRankSum=-3.702e+00;QD=0.88;ReadPosRankSum=0.470;SOR=0.020;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",7359874,".","T","C","0/0","0/1",37.19,"BQB;MQ40;QD2","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|exon-XR_189782.3-1|GENE_exon-XR_189782.3-1|transcript|rna-XR_189782.3|pseudogene||n.*2906T>C|||||2906|,C|intergenic_region|MODIFIER|exon-XR_189782.3-1-exon-XR_003472788.1-1|GENE_exon-XR_189782.3-1-GENE_exon-XR_003472788.1-1|intergenic_region|GENE_exon-XR_189782.3-1-GENE_exon-XR_003472788.1-1|||n.7359874T>C||||||;BaseQRankSum=-4.389e+00;ClippingRankSum=0.00;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=30.28;MQRankSum=0.345;QD=0.73;ReadPosRankSum=-6.960e-01;SOR=0.609;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021164.1",7775055,".","G","A","0/0","0/1",1325.19,"PASS","AC=1;AF=0.250;AN=4;ANN=A|3_prime_UTR_variant|MODIFIER|exon-XM_027334403.1-1|GENE_exon-XM_027334403.1-1|transcript|rna-XM_027334403.1|protein_coding|3/3|c.*498C>T|||||702|,A|non_coding_transcript_variant|MODIFIER|LOC101499997|gene-LOC101499997|transcript|XM_027334403.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=3.92;ClippingRankSum=0.00;DP=142;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.250;MQ=59.31;MQRankSum=-3.269e+00;QD=15.59;ReadPosRankSum=-1.340e-01;SOR=0.556;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",7829375,".","C","T","0/1","0/0",297.87,"mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012715514.1-1-exon-XM_004499513.3-1|GENE_exon-XM_012715514.1-1-GENE_exon-XM_004499513.3-1|intergenic_region|GENE_exon-XM_012715514.1-1-GENE_exon-XM_004499513.3-1|||n.7829375C>T||||||;BaseQRankSum=1.62;ClippingRankSum=0.00;DP=57;ExcessHet=3.9794;FS=38.166;MLEAC=2;MLEAF=0.500;MQ=52.09;MQRankSum=-4.552e+00;QD=11.03;ReadPosRankSum=-3.475e+00;SOR=4.606;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",8185813,".","T","C","0/0","0/1",36.19,"mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XR_003473082.1-1-exon-XR_003472903.1-1|GENE_exon-XR_003473082.1-1-GENE_exon-XR_003472903.1-1|intergenic_region|GENE_exon-XR_003473082.1-1-GENE_exon-XR_003472903.1-1|||n.8185813T>C||||||;BaseQRankSum=-1.465e+00;ClippingRankSum=0.00;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=50.92;MQRankSum=-8.540e-01;QD=4.52;ReadPosRankSum=1.24;SOR=0.307;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",8293694,".","G","A","1/1","0/1",282.47,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_189787.3-1-exon-XM_027334659.1-1|GENE_exon-XR_189787.3-1-GENE_exon-XM_027334659.1-1|intergenic_region|GENE_exon-XR_189787.3-1-GENE_exon-XM_027334659.1-1|||n.8293694G>A||||||;BaseQRankSum=2.84;ClippingRankSum=0.00;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=29.49;MQRankSum=0.908;QD=16.62;ReadPosRankSum=-1.161e+00;SOR=2.712;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",8590217,".","C","T","0/1","0/0",14.42,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101491247|gene-LOC101491247|transcript|XM_027334660.1|protein_coding||c.-5113C>T|||||2756|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_027334660.1-1|GENE_exon-XM_027334660.1-1|transcript|rna-XM_027334660.1|protein_coding||c.-2762C>T|||||2756|,T|intergenic_region|MODIFIER|exon-XM_004499543.3-1-exon-XM_027334660.1-1|GENE_exon-XM_004499543.3-1-GENE_exon-XM_027334660.1-1|intergenic_region|GENE_exon-XM_004499543.3-1-GENE_exon-XM_027334660.1-1|||n.8590217C>T||||||;BaseQRankSum=3.30;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=7.904;MLEAC=1;MLEAF=0.250;MQ=43.55;MQRankSum=0.536;QD=0.72;ReadPosRankSum=0.00;SOR=0.039;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",8903481,".","C","T","0/0","0/1",120.62,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004499561.3-1-exon-XR_003473136.1-1|GENE_exon-XM_004499561.3-1-GENE_exon-XR_003473136.1-1|intergenic_region|GENE_exon-XM_004499561.3-1-GENE_exon-XR_003473136.1-1|||n.8903481C>T||||||;BaseQRankSum=2.46;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=29.432;MLEAC=1;MLEAF=0.250;MQ=68.21;MQRankSum=0.504;QD=2.19;ReadPosRankSum=-2.270e-01;SOR=4.969;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",9295756,".","G","A","0/1","0/0",126.19,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101497082|gene-LOC101497082|transcript|XM_027334266.1|protein_coding||c.-28688G>A|||||2321|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101496767|gene-LOC101496767|transcript|XM_004499580.3|protein_coding||c.*2924G>A|||||1327|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004499580.3-1|GENE_exon-XM_004499580.3-1|transcript|rna-XM_004499580.3|protein_coding||c.*1761G>A|||||1327|,A|downstream_gene_variant|MODIFIER|exon-XM_027334266.1-1|GENE_exon-XM_027334266.1-1|transcript|rna-XM_027334266.1|protein_coding||c.*2512C>T|||||2321|,A|intergenic_region|MODIFIER|exon-XM_004499580.3-1-exon-XM_027334266.1-1|GENE_exon-XM_004499580.3-1-GENE_exon-XM_027334266.1-1|intergenic_region|GENE_exon-XM_004499580.3-1-GENE_exon-XM_027334266.1-1|||n.9295756G>A||||||;BaseQRankSum=3.11;ClippingRankSum=0.00;DP=111;ExcessHet=3.0103;FS=29.981;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=2.47;ReadPosRankSum=-1.070e+00;SOR=4.163;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",10280435,".","C","CGAAATGTAGATTTGACAAAGTTTTTTTTTTTTATAAATTATTTCAATTTTTATTGAAATAACAAAAAGTTATATATATATATATAATTAATATAATTCATAAAAATAGATAAATAAAAATTTTAAATTACGATAAAATTTTAGGAAATTTAAGTTT","0/0","1/1",1028.58,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=CGAAATGTAGATTTGACAAAGTTTTTTTTTTTTATAAATTATTTCAATTTTTATTGAAATAACAAAAAGTTATATATATATATATAATTAATATAATTCATAAAAATAGATAAATAAAAATTTTAAATTACGATAAAATTTTAGGAAATTTAAGTTT|upstream_gene_variant|MODIFIER|LOC101499490|gene-LOC101499490|transcript|XM_004499668.1|protein_coding||c.-3498_-3497insGAAATGTAGATTTGACAAAGTTTTTTTTTTTTATAAATTATTTCAATTTTTATTGAAATAACAAAAAGTTATATATATATATATAATTAATATAATTCATAAAAATAGATAAATAAAAATTTTAAATTACGATAAAATTTTAGGAAATTTAAGTTT|||||1201|WARNING_TRANSCRIPT_NO_START_CODON,CGAAATGTAGATTTGACAAAGTTTTTTTTTTTTATAAATTATTTCAATTTTTATTGAAATAACAAAAAGTTATATATATATATATAATTAATATAATTCATAAAAATAGATAAATAAAAATTTTAAATTACGATAAAATTTTAGGAAATTTAAGTTT|downstream_gene_variant|MODIFIER|exon-XM_004499668.1-1|GENE_exon-XM_004499668.1-1|transcript|rna-XM_004499668.1|protein_coding||c.*1201_*1202insAAACTTAAATTTCCTAAAATTTTATCGTAATTTAAAATTTTTATTTATCTATTTTTATGAATTATATTAATTATATATATATATATAACTTTTTGTTATTTCAATAAAAATTGAAATAATTTATAAAAAAAAAAAACTTTGTCAAATCTACATTTC|||||1201|,CGAAATGTAGATTTGACAAAGTTTTTTTTTTTTATAAATTATTTCAATTTTTATTGAAATAACAAAAAGTTATATATATATATATAATTAATATAATTCATAAAAATAGATAAATAAAAATTTTAAATTACGATAAAATTTTAGGAAATTTAAGTTT|intergenic_region|MODIFIER|exon-XM_004499648.3-1-exon-XM_004499668.1-1|GENE_exon-XM_004499648.3-1-GENE_exon-XM_004499668.1-1|intergenic_region|GENE_exon-XM_004499648.3-1-GENE_exon-XM_004499668.1-1|||n.10280435_10280436insGAAATGTAGATTTGACAAAGTTTTTTTTTTTTATAAATTATTTCAATTTTTATTGAAATAACAAAAAGTTATATATATATATATAATTAATATAATTCATAAAAATAGATAAATAAAAATTTTAAATTACGATAAAATTTTAGGAAATTTAAGTTT||||||;BaseQRankSum=-1.580e-01;ClippingRankSum=0.00;DP=40;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.53;MQRankSum=-1.508e+00;QD=27.23;ReadPosRankSum=-3.244e+00;SOR=0.301;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",10601852,".","T","TTAATAATAATAATAATAATAATAATAATAATAA","0/0","1/1",278.43,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=TTAATAATAATAATAATAATAATAATAATAATAA|intergenic_region|MODIFIER|exon-XM_004499665.3-1-exon-XR_003472914.1-1|GENE_exon-XM_004499665.3-1-GENE_exon-XR_003472914.1-1|intergenic_region|GENE_exon-XM_004499665.3-1-GENE_exon-XR_003472914.1-1|||n.10601852_10601853insTAATAATAATAATAATAATAATAATAATAATAA||||||;DP=20;ExcessHet=1.5490;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=48.10;QD=32.50;SOR=1.179;SAL5=1;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",10748571,".","A","G","0/0","0/1",29.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=G|3_prime_UTR_variant|MODIFIER|exon-XM_027334801.1-1|GENE_exon-XM_027334801.1-1|transcript|rna-XM_027334801.1|protein_coding|10/10|c.*172A>G|||||172|,G|upstream_gene_variant|MODIFIER|exon-XR_003472972.1-1|GENE_exon-XR_003472972.1-1|transcript|rna-XR_003472972.1|pseudogene||n.-415T>C|||||415|,G|non_coding_transcript_variant|MODIFIER|LOC101507086|gene-LOC101507086|transcript|XM_027334801.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.105e+00;ClippingRankSum=0.00;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=0.83;ReadPosRankSum=0.644;SOR=0.421;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",11168112,".","C","A","0/1","0/0",73.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=A|intron_variant|MODIFIER|LOC101509622|LOC101509622|transcript|gene-LOC101509622|pseudogene|2/2|n.387+425C>A||||||;BaseQRankSum=4.06;ClippingRankSum=0.00;DP=438;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.250;MQ=43.12;MQRankSum=-3.628e+00;QD=0.35;ReadPosRankSum=-2.060e-01;SOR=0.572;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021164.1",11727547,".","A","G","0/1","0/0",10.58,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_027335184.1-1|GENE_exon-XM_027335184.1-1|transcript|rna-XM_027335184.1|protein_coding||c.-324T>C|||||315|,G|downstream_gene_variant|MODIFIER|LOC113786780|gene-LOC113786780|transcript|XM_027335184.1|protein_coding||c.*3548A>G|||||315|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_027335184.1-1-exon-XM_004499745.1-1|GENE_exon-XM_027335184.1-1-GENE_exon-XM_004499745.1-1|intergenic_region|GENE_exon-XM_027335184.1-1-GENE_exon-XM_004499745.1-1|||n.11727547A>G||||||;BaseQRankSum=-4.458e+00;ClippingRankSum=0.00;DP=565;ExcessHet=3.0103;FS=6.191;MLEAC=1;MLEAF=0.250;MQ=54.82;MQRankSum=-6.402e+00;QD=0.04;ReadPosRankSum=1.82;SOR=1.445;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",11917562,".","G","A","0/1","0/0",114.87,"MQ40;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_012715634.1-1-exon-XM_004499713.3-1|GENE_exon-XM_012715634.1-1-GENE_exon-XM_004499713.3-1|intergenic_region|GENE_exon-XM_012715634.1-1-GENE_exon-XM_004499713.3-1|||n.11917562G>A||||||;BaseQRankSum=2.20;ClippingRankSum=0.00;DP=29;ExcessHet=3.9794;FS=2.522;MLEAC=2;MLEAF=0.500;MQ=38.70;MQRankSum=-1.655e+00;QD=8.84;ReadPosRankSum=-1.139e+00;SOR=1.546;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",12462233,".","A","T","0/1","0/0",138.19,"MQ40;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004499738.3-1-exon-XM_004499739.3-1|GENE_exon-XM_004499738.3-1-GENE_exon-XM_004499739.3-1|intergenic_region|GENE_exon-XM_004499738.3-1-GENE_exon-XM_004499739.3-1|||n.12462233A>T||||||;BaseQRankSum=0.442;ClippingRankSum=0.00;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=33.11;MQRankSum=2.02;QD=4.06;ReadPosRankSum=1.70;SOR=0.460;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",13629561,".","T","A","0/1","0/0",84.86,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003473050.1-1-exon-XM_004499763.3-1|GENE_exon-XR_003473050.1-1-GENE_exon-XM_004499763.3-1|intergenic_region|GENE_exon-XR_003473050.1-1-GENE_exon-XM_004499763.3-1|||n.13629561T>A||||||;BaseQRankSum=3.22;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=12.891;MLEAC=1;MLEAF=0.250;MQ=55.01;MQRankSum=-5.038e+00;QD=1.29;ReadPosRankSum=1.39;SOR=2.661;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
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["NC_021164.1",13978340,".","A","G","0/0","0/1",155.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101513699|LOC101513699|transcript|gene-LOC101513699|pseudogene||n.-3576A>G|||||3576|,G|downstream_gene_variant|MODIFIER|exon-XM_027334808.1-1|GENE_exon-XM_027334808.1-1|transcript|rna-XM_027334808.1|protein_coding||c.*2019A>G|||||1976|,G|downstream_gene_variant|MODIFIER|LOC105851144|gene-LOC105851144|transcript|XM_012715665.2|protein_coding||c.*23765A>G|||||4300|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012715665.2-1|GENE_exon-XM_012715665.2-1|transcript|rna-XM_012715665.2|protein_coding||c.*5582A>G|||||4300|,G|downstream_gene_variant|MODIFIER|exon-XM_012715666.2-1|GENE_exon-XM_012715666.2-1|transcript|rna-XM_012715666.2|protein_coding||c.*5582A>G|||||4300|,G|downstream_gene_variant|MODIFIER|exon-XM_027334810.1-1|GENE_exon-XM_027334810.1-1|transcript|rna-XM_027334810.1|protein_coding||c.*4464A>G|||||4300|,G|downstream_gene_variant|MODIFIER|LOC105851144|gene-LOC105851144|transcript|XM_027334808.1|protein_coding||c.*23766A>G|||||1976|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC105851144|gene-LOC105851144|transcript|XM_012715666.2|protein_coding||c.*23765A>G|||||4300|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC105851144|gene-LOC105851144|transcript|XM_027334810.1|protein_coding||c.*23765A>G|||||4300|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_027334808.1-1-LOC101513699|GENE_exon-XM_027334808.1-1-LOC101513699|intergenic_region|GENE_exon-XM_027334808.1-1-LOC101513699|||n.13978340A>G||||||;BaseQRankSum=-3.651e+00;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=8.587;MLEAC=1;MLEAF=0.250;MQ=53.93;MQRankSum=-5.546e+00;QD=2.68;ReadPosRankSum=-4.339e+00;SOR=1.804;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021164.1",15270054,".","G","A","0/0","0/1",102.87,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101501915|gene-LOC101501915|transcript|XM_004499805.1|protein_coding||c.-1942G>A|||||178|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004499805.1-1|GENE_exon-XM_004499805.1-1|transcript|rna-XM_004499805.1|protein_coding||c.*178C>T|||||178|,A|intergenic_region|MODIFIER|LOC105852090-exon-XM_004499805.1-1|LOC105852090-GENE_exon-XM_004499805.1-1|intergenic_region|LOC105852090-GENE_exon-XM_004499805.1-1|||n.15270054G>A||||||;BaseQRankSum=4.23;ClippingRankSum=0.00;DP=113;ExcessHet=3.9794;FS=13.360;MLEAC=2;MLEAF=0.500;MQ=57.16;MQRankSum=-7.708e+00;QD=1.69;ReadPosRankSum=3.10;SOR=2.550;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021164.1",23644261,".","G","A","0/1","0/0",23.21,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC113786679|gene-LOC113786679|transcript|XM_027334706.1|protein_coding||c.-16897G>A|||||1104|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_027334706.1-1|GENE_exon-XM_027334706.1-1|transcript|rna-XM_027334706.1|protein_coding||c.-1104G>A|||||1104|,A|intergenic_region|MODIFIER|LOC101497418-exon-XM_027334706.1-1|LOC101497418-GENE_exon-XM_027334706.1-1|intergenic_region|LOC101497418-GENE_exon-XM_027334706.1-1|||n.23644261G>A||||||;BaseQRankSum=5.00;ClippingRankSum=0.00;DP=107;ExcessHet=3.0103;FS=8.433;MLEAC=1;MLEAF=0.250;MQ=54.82;MQRankSum=-5.952e+00;QD=0.40;ReadPosRankSum=0.401;SOR=2.244;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021164.1",24125390,".","T","C","0/0","0/1",230.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|LOC113786739-exon-XM_004500115.3-1|LOC113786739-GENE_exon-XM_004500115.3-1|intergenic_region|LOC113786739-GENE_exon-XM_004500115.3-1|||n.24125390T>C||||||;BaseQRankSum=-1.524e+00;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=7.419;MLEAC=1;MLEAF=0.250;MQ=53.97;MQRankSum=-6.360e-01;QD=6.98;ReadPosRankSum=0.465;SOR=2.030;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",24326453,".","G","A","0/1","0/0",277.19,"BQB","AC=1;AF=0.250;AN=4;ANN=A|synonymous_variant|LOW|exon-XM_012715808.2-1|GENE_exon-XM_012715808.2-1|transcript|rna-XM_012715808.2|protein_coding|1/4|c.225C>T|p.Asn75Asn|225/2040|225/2040|75/679||,A|non_coding_transcript_variant|MODIFIER|LOC105852148|gene-LOC105852148|transcript|XM_012715808.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.97;ClippingRankSum=0.00;DP=75;ExcessHet=3.0103;FS=10.084;MLEAC=1;MLEAF=0.250;MQ=57.50;MQRankSum=-1.091e+00;QD=6.76;ReadPosRankSum=1.36;SOR=0.070;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",25418876,".","G","A","0/1","0/0",186.28,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004500373.3-1-exon-XM_004500215.3-1|GENE_exon-XM_004500373.3-1-GENE_exon-XM_004500215.3-1|intergenic_region|GENE_exon-XM_004500373.3-1-GENE_exon-XM_004500215.3-1|||n.25418876G>A||||||;BaseQRankSum=1.54;ClippingRankSum=0.00;DP=17;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.250;MQ=30.00;MQRankSum=0.00;QD=16.93;ReadPosRankSum=-8.800e-01;SOR=0.074;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",25528320,".","G","A","0/1","0/0",25.29,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003472814.1-1-exon-XM_027334289.1-1|GENE_exon-XR_003472814.1-1-GENE_exon-XM_027334289.1-1|intergenic_region|GENE_exon-XR_003472814.1-1-GENE_exon-XM_027334289.1-1|||n.25528320G>A||||||;BaseQRankSum=3.38;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=12.617;MLEAC=1;MLEAF=0.250;MQ=59.32;MQRankSum=-2.246e+00;QD=0.77;ReadPosRankSum=0.996;SOR=1.754;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",25827294,".","C","T","0/0","0/1",56.19,"QD2","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|exon-XM_027334382.1-1|GENE_exon-XM_027334382.1-1|transcript|rna-XM_027334382.1|protein_coding||c.*5369C>T|||||4844|,T|downstream_gene_variant|MODIFIER|LOC101507821|gene-LOC101507821|transcript|XM_004500233.3|protein_coding||c.*8336C>T|||||4844|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004500233.3-1|GENE_exon-XM_004500233.3-1|transcript|rna-XM_004500233.3|protein_coding||c.*5323C>T|||||4844|,T|downstream_gene_variant|MODIFIER|LOC101507821|gene-LOC101507821|transcript|XM_027334382.1|protein_coding||c.*8344C>T|||||4844|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027334382.1-1-exon-XM_004500379.1-1|GENE_exon-XM_027334382.1-1-GENE_exon-XM_004500379.1-1|intergenic_region|GENE_exon-XM_027334382.1-1-GENE_exon-XM_004500379.1-1|||n.25827294C>T||||||;BaseQRankSum=3.96;ClippingRankSum=0.00;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=55.54;MQRankSum=-1.418e+00;QD=0.75;ReadPosRankSum=0.081;SOR=0.787;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021164.1",26384489,".","A","G","0/1","0/0",324.21,"BQB","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101491360|gene-LOC101491360|transcript|XM_004500267.3|protein_coding||c.*4216A>G|||||2215|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004500267.3-1|GENE_exon-XM_004500267.3-1|transcript|rna-XM_004500267.3|protein_coding||c.*2466A>G|||||2215|,G|intergenic_region|MODIFIER|exon-XM_004500267.3-1-exon-XM_004500268.3-1|GENE_exon-XM_004500267.3-1-GENE_exon-XM_004500268.3-1|intergenic_region|GENE_exon-XM_004500267.3-1-GENE_exon-XM_004500268.3-1|||n.26384489A>G||||||;BaseQRankSum=-5.920e+00;ClippingRankSum=0.00;DP=160;ExcessHet=3.0103;FS=32.366;MLEAC=1;MLEAF=0.250;MQ=56.43;MQRankSum=-9.531e+00;QD=3.52;ReadPosRankSum=-7.340e-01;SOR=5.221;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",27796361,".","A","G","0/1","0/0",157.87,"mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101496771|gene-LOC101496771|transcript|XM_027335186.1|protein_coding||c.-4037A>G|||||957|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_027335186.1-1|GENE_exon-XM_027335186.1-1|transcript|rna-XM_027335186.1|protein_coding||c.*1056T>C|||||957|,G|intergenic_region|MODIFIER|exon-XM_027335187.1-1-exon-XM_027335186.1-1|GENE_exon-XM_027335187.1-1-GENE_exon-XM_027335186.1-1|intergenic_region|GENE_exon-XM_027335187.1-1-GENE_exon-XM_027335186.1-1|||n.27796361A>G||||||;BaseQRankSum=-3.079e+00;ClippingRankSum=0.00;DP=38;ExcessHet=3.0103;FS=9.031;MLEAC=2;MLEAF=0.500;MQ=59.83;MQRankSum=-6.450e-01;QD=9.87;ReadPosRankSum=-2.800e-01;SOR=3.797;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",28155656,".","A","ATATTATTATTATTATTATTATCATTATTATTATTATTAT","0/0","1/1",695.4,"mrd30","AC=2;AF=0.500;AN=4;ANN=ATATTATTATTATTATTATTATCATTATTATTATTATTAT|upstream_gene_variant|MODIFIER|LOC101502662|gene-LOC101502662|transcript|XM_004500444.3|protein_coding||c.-13677_-13676insTATTATTATTATTATTATTATCATTATTATTATTATTAT|||||1483|WARNING_TRANSCRIPT_NO_START_CODON,ATATTATTATTATTATTATTATCATTATTATTATTATTAT|upstream_gene_variant|MODIFIER|exon-XM_004500444.3-1|GENE_exon-XM_004500444.3-1|transcript|rna-XM_004500444.3|protein_coding||c.-1695_-1694insTATTATTATTATTATTATTATCATTATTATTATTATTAT|||||1483|,ATATTATTATTATTATTATTATCATTATTATTATTATTAT|downstream_gene_variant|MODIFIER|LOC101502356|gene-LOC101502356|transcript|XM_004500443.3|protein_coding||c.*4602_*4603insTATTATTATTATTATTATTATCATTATTATTATTATTAT|||||2218|WARNING_TRANSCRIPT_NO_START_CODON,ATATTATTATTATTATTATTATCATTATTATTATTATTAT|downstream_gene_variant|MODIFIER|exon-XM_004500443.3-1|GENE_exon-XM_004500443.3-1|transcript|rna-XM_004500443.3|protein_coding||c.*2403_*2404insTATTATTATTATTATTATTATCATTATTATTATTATTAT|||||2218|,ATATTATTATTATTATTATTATCATTATTATTATTATTAT|intergenic_region|MODIFIER|exon-XM_004500443.3-1-exon-XM_004500444.3-1|GENE_exon-XM_004500443.3-1-GENE_exon-XM_004500444.3-1|intergenic_region|GENE_exon-XM_004500443.3-1-GENE_exon-XM_004500444.3-1|||n.28155656_28155657insTATTATTATTATTATTATTATCATTATTATTATTATTAT||||||;BaseQRankSum=1.66;ClippingRankSum=0.00;DP=64;ExcessHet=1.5490;FS=4.075;MLEAC=3;MLEAF=0.750;MQ=55.19;MQRankSum=1.95;QD=30.23;ReadPosRankSum=-1.088e+00;SOR=1.108;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",28766033,".","TA","T","0/0","0/1",24.16,"QD2","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_012715900.2-1|GENE_exon-XM_012715900.2-1|transcript|rna-XM_012715900.2|protein_coding||c.-262delT|||||262|,T|upstream_gene_variant|MODIFIER|LOC105852170|gene-LOC105852170|transcript|XM_012715901.1|protein_coding||c.-13581delA|||||140|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_012715901.1-1|GENE_exon-XM_012715901.1-1|transcript|rna-XM_012715901.1|protein_coding||c.-140delA|||||140|,T|downstream_gene_variant|MODIFIER|LOC105852169|gene-LOC105852169|transcript|XM_012715900.2|protein_coding||c.*2003delA|||||262|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_012715900.2-1-exon-XM_012715901.1-1|GENE_exon-XM_012715900.2-1-GENE_exon-XM_012715901.1-1|intergenic_region|GENE_exon-XM_012715900.2-1-GENE_exon-XM_012715901.1-1|||n.28766034delA||||||;BaseQRankSum=0.839;ClippingRankSum=0.00;DP=113;ExcessHet=3.0103;FS=4.424;MLEAC=1;MLEAF=0.250;MQ=47.63;MQRankSum=-2.914e+00;QD=0.64;ReadPosRankSum=0.500;SOR=1.931;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",30010839,".","G","C","0/0","0/1",94.19,"QD2","AC=1;AF=0.250;AN=4;ANN=C|downstream_gene_variant|MODIFIER|LOC101503301|gene-LOC101503301|transcript|XM_012715972.2|protein_coding||c.*2394G>C|||||667|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_012715972.2-1|GENE_exon-XM_012715972.2-1|transcript|rna-XM_012715972.2|protein_coding||c.*784G>C|||||667|,C|intergenic_region|MODIFIER|exon-XM_012715972.2-1-exon-XM_004500628.3-1|GENE_exon-XM_012715972.2-1-GENE_exon-XM_004500628.3-1|intergenic_region|GENE_exon-XM_012715972.2-1-GENE_exon-XM_004500628.3-1|||n.30010839G>C||||||;BaseQRankSum=2.05;ClippingRankSum=0.00;DP=106;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.250;MQ=58.14;MQRankSum=-7.449e+00;QD=1.65;ReadPosRankSum=0.202;SOR=0.785;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",31823671,".","TG","T","0/0","0/1",117.15,"map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004500882.3-1|GENE_exon-XM_004500882.3-1|transcript|rna-XM_004500882.3|protein_coding||c.-4361delC|||||4244|,T|upstream_gene_variant|MODIFIER|LOC101507413|gene-LOC101507413|transcript|XM_027334960.1|protein_coding||c.-8750delG|||||3587|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_027334960.1-1|GENE_exon-XM_027334960.1-1|transcript|rna-XM_027334960.1|protein_coding||c.-3707delG|||||3587|,T|downstream_gene_variant|MODIFIER|LOC101506427|gene-LOC101506427|transcript|XM_004500882.3|protein_coding||c.*7709delG|||||4244|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004500882.3-1-exon-XM_027334960.1-1|GENE_exon-XM_004500882.3-1-GENE_exon-XM_027334960.1-1|intergenic_region|GENE_exon-XM_004500882.3-1-GENE_exon-XM_027334960.1-1|||n.31823672delG||||||;BaseQRankSum=-6.540e-01;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=57.17;MQRankSum=-4.710e+00;QD=3.17;ReadPosRankSum=0.573;SOR=0.634;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",32914421,".","TTTATTA","T","0/0","1/1",1772.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|intergenic_region|MODIFIER|LOC101492994-exon-XM_004501014.3-1|gene-LOC101492994-GENE_exon-XM_004501014.3-1|intergenic_region|gene-LOC101492994-GENE_exon-XM_004501014.3-1|||n.32914422_32914427delTTATTA||||||;DP=106;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.52;QD=29.28;SOR=0.793;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",35915901,".","AT","A","1/1","0/0",1300.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|downstream_gene_variant|MODIFIER|exon-XR_189867.3-1|GENE_exon-XR_189867.3-1|transcript|rna-XR_189867.3|pseudogene||n.*1526delT|||||1526|,A|downstream_gene_variant|MODIFIER|exon-XR_001143971.2-1|GENE_exon-XR_001143971.2-1|transcript|rna-XR_001143971.2|pseudogene||n.*1526delT|||||1526|,A|downstream_gene_variant|MODIFIER|exon-XR_003472836.1-1|GENE_exon-XR_003472836.1-1|transcript|rna-XR_003472836.1|pseudogene||n.*1526delT|||||1526|,A|intergenic_region|MODIFIER|exon-XR_189867.3-1-exon-XM_004501413.3-1|GENE_exon-XR_189867.3-1-GENE_exon-XM_004501413.3-1|intergenic_region|GENE_exon-XR_189867.3-1-GENE_exon-XM_004501413.3-1|||n.35915902delT||||||;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.08;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021164.1",36093190,".","T","C","1/1","0/0",1100.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101491995|gene-LOC101491995|transcript|XM_004501434.3|protein_coding||c.-6428T>C|||||254|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101491995|gene-LOC101491995|transcript|XM_004501436.3|protein_coding||c.-4891T>C|||||254|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101509000|gene-LOC101509000|transcript|XM_027334731.1|protein_coding||c.*6067T>C|||||171|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_027334731.1-1|GENE_exon-XM_027334731.1-1|transcript|rna-XM_027334731.1|protein_coding||c.*1575T>C|||||171|,C|downstream_gene_variant|MODIFIER|exon-XM_004501436.3-1|GENE_exon-XM_004501436.3-1|transcript|rna-XM_004501436.3|protein_coding||c.*483A>G|||||254|,C|downstream_gene_variant|MODIFIER|exon-XM_004501434.3-1|GENE_exon-XM_004501434.3-1|transcript|rna-XM_004501434.3|protein_coding||c.*483A>G|||||254|,C|intergenic_region|MODIFIER|exon-XM_027334731.1-1-exon-XM_004501436.3-1|GENE_exon-XM_027334731.1-1-GENE_exon-XM_004501436.3-1|intergenic_region|GENE_exon-XM_027334731.1-1-GENE_exon-XM_004501436.3-1|||n.36093190T>C||||||;DP=85;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=22.46;SOR=1.007;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",36880097,".","G","A","0/1","0/0",45.86,"mrd30","AC=1;AF=0.250;AN=4;ANN=A|missense_variant|MODERATE|exon-XM_004501752.1-1|GENE_exon-XM_004501752.1-1|transcript|rna-XM_004501752.1|protein_coding|2/2|c.1100C>T|p.Ala367Val|1100/1215|1100/1215|367/404||,A|non_coding_transcript_variant|MODIFIER|LOC101512850|gene-LOC101512850|transcript|XM_004501752.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=2.15;ClippingRankSum=0.00;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=53.27;MQRankSum=-3.917e+00;QD=2.29;ReadPosRankSum=0.852;SOR=0.495;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",37715549,".","T","C","0/1","0/0",33.33,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_012716152.2-1-exon-XM_004501626.3-1|GENE_exon-XM_012716152.2-1-GENE_exon-XM_004501626.3-1|intergenic_region|GENE_exon-XM_012716152.2-1-GENE_exon-XM_004501626.3-1|||n.37715549T>C||||||;BaseQRankSum=-2.200e+00;ClippingRankSum=0.00;DP=22;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.250;MQ=30.28;MQRankSum=0.319;QD=3.70;ReadPosRankSum=2.20;SOR=1.911;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",39297711,".","A","T","0/0","0/1",12,"MQ40;QD2;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XR_003473137.1-1|GENE_exon-XR_003473137.1-1|transcript|rna-XR_003473137.1|pseudogene||n.-4384T>A|||||4384|,T|upstream_gene_variant|MODIFIER|exon-XR_003473144.1-1|GENE_exon-XR_003473144.1-1|transcript|rna-XR_003473144.1|pseudogene||n.-4188T>A|||||4188|,T|upstream_gene_variant|MODIFIER|exon-XR_003473127.1-1|GENE_exon-XR_003473127.1-1|transcript|rna-XR_003473127.1|pseudogene||n.-3967T>A|||||3967|,T|downstream_gene_variant|MODIFIER|LOC113786823|gene-LOC113786823|transcript|XR_003473137.1|snoRNA||n.*4473A>T|||||4384|,T|downstream_gene_variant|MODIFIER|LOC113786830|gene-LOC113786830|transcript|XR_003473144.1|snoRNA||n.*4335A>T|||||4188|,T|downstream_gene_variant|MODIFIER|LOC113786813|gene-LOC113786813|transcript|XR_003473127.1|snoRNA||n.*4116A>T|||||3967|,T|intergenic_region|MODIFIER|exon-XR_003473127.1-1-exon-XM_004501848.3-1|GENE_exon-XR_003473127.1-1-GENE_exon-XM_004501848.3-1|intergenic_region|GENE_exon-XR_003473127.1-1-GENE_exon-XM_004501848.3-1|||n.39297711A>T||||||;BaseQRankSum=1.69;ClippingRankSum=0.00;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=22.52;MQRankSum=0.259;QD=1.00;ReadPosRankSum=0.518;SOR=0.148;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",39489173,".","A","C","0/1","1/1",1917.2,"map;mrd30","AC=3;AF=0.750;AN=4;ANN=C|5_prime_UTR_variant|MODIFIER|exon-XM_027334555.1-1|GENE_exon-XM_027334555.1-1|transcript|rna-XM_027334555.1|protein_coding|1/2|c.-37T>G|||||37|,C|non_coding_transcript_variant|MODIFIER|LOC113786621|gene-LOC113786621|transcript|XM_027334555.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.246e+00;ClippingRankSum=0.00;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=44.41;MQRankSum=-6.010e-01;QD=27.45;ReadPosRankSum=2.15;SOR=1.329;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",40094602,".","G","A","0/1","0/0",51.19,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004501916.3-1-exon-XR_001143989.2-1|GENE_exon-XM_004501916.3-1-GENE_exon-XR_001143989.2-1|intergenic_region|GENE_exon-XM_004501916.3-1-GENE_exon-XR_001143989.2-1|||n.40094602G>A||||||;BaseQRankSum=2.62;ClippingRankSum=0.00;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=25.41;MQRankSum=1.79;QD=1.65;ReadPosRankSum=1.61;SOR=0.706;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",41428877,".","T","A","0/1","0/0",231.87,"PASS","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027334739.1-1-exon-XR_003472728.1-1|GENE_exon-XM_027334739.1-1-GENE_exon-XR_003472728.1-1|intergenic_region|GENE_exon-XM_027334739.1-1-GENE_exon-XR_003472728.1-1|||n.41428877T>A||||||;BaseQRankSum=0.998;ClippingRankSum=0.00;DP=104;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.64;MQRankSum=-2.024e+00;QD=4.46;ReadPosRankSum=0.360;SOR=0.606;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",41677816,".","G","A","0/0","0/1",191.19,"BQB","AC=1;AF=0.250;AN=4;ANN=A|missense_variant|MODERATE|exon-XM_012716347.1-1|GENE_exon-XM_012716347.1-1|transcript|rna-XM_012716347.1|protein_coding|4/25|c.352G>A|p.Gly118Arg|688/3318|352/2697|118/898||,A|non_coding_transcript_variant|MODIFIER|LOC101496222|gene-LOC101496222|transcript|XM_012716347.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=5.36;ClippingRankSum=0.00;DP=135;ExcessHet=3.0103;FS=21.095;MLEAC=1;MLEAF=0.250;MQ=53.55;MQRankSum=-5.283e+00;QD=3.24;ReadPosRankSum=-1.245e+00;SOR=4.463;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",42392522,".","C","T","0/0","0/1",10.58,"QD2","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101503304|gene-LOC101503304|transcript|XM_004502311.2|protein_coding||c.-2464C>T|||||1272|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004502311.2-1|GENE_exon-XM_004502311.2-1|transcript|rna-XM_004502311.2|protein_coding||c.-1272C>T|||||1272|,T|upstream_gene_variant|MODIFIER|LOC101497307|gene-LOC101497307|transcript|XM_004502204.3|protein_coding||c.-7302C>T|||||3941|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004502204.3-1|GENE_exon-XM_004502204.3-1|transcript|rna-XM_004502204.3|protein_coding||c.*4527G>A|||||3941|,T|intergenic_region|MODIFIER|exon-XM_004502310.1-1-exon-XM_004502311.2-1|GENE_exon-XM_004502310.1-1-GENE_exon-XM_004502311.2-1|intergenic_region|GENE_exon-XM_004502310.1-1-GENE_exon-XM_004502311.2-1|||n.42392522C>T||||||;BaseQRankSum=3.16;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=15.818;MLEAC=1;MLEAF=0.250;MQ=76.94;MQRankSum=-4.198e+00;QD=0.23;ReadPosRankSum=-2.100e-01;SOR=1.834;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",42824222,".","C","T","0/1","0/0",38.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101515025|LOC101515025|transcript|gene-LOC101515025|pseudogene||n.-2179G>A|||||2179|,T|intergenic_region|MODIFIER|LOC101515025-exon-XM_004502259.3-1|LOC101515025-GENE_exon-XM_004502259.3-1|intergenic_region|LOC101515025-GENE_exon-XM_004502259.3-1|||n.42824222C>T||||||;BaseQRankSum=4.22;ClippingRankSum=0.00;DP=165;ExcessHet=3.0103;FS=15.703;MLEAC=1;MLEAF=0.250;MQ=59.68;MQRankSum=-8.102e+00;QD=0.57;ReadPosRankSum=0.450;SOR=3.911;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",44617599,".","A","AT","1/1","0/1",710.16,"mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=AT|upstream_gene_variant|MODIFIER|LOC101509002|gene-LOC101509002|transcript|XM_004502500.3|protein_coding||c.-7962_-7961insT|||||1534|WARNING_TRANSCRIPT_NO_START_CODON,AT|upstream_gene_variant|MODIFIER|exon-XM_004502500.3-1|GENE_exon-XM_004502500.3-1|transcript|rna-XM_004502500.3|protein_coding||c.-1761_-1760insT|||||1534|,AT|upstream_gene_variant|MODIFIER|exon-XM_004502501.3-1|GENE_exon-XM_004502501.3-1|transcript|rna-XM_004502501.3|protein_coding||c.-2643_-2642insT|||||1534|,AT|upstream_gene_variant|MODIFIER|LOC101509002|gene-LOC101509002|transcript|XM_004502501.3|protein_coding||c.-7962_-7961insT|||||1534|WARNING_TRANSCRIPT_NO_START_CODON,AT|downstream_gene_variant|MODIFIER|LOC101508682|gene-LOC101508682|transcript|XM_027334472.1|protein_coding||c.*2452_*2453insT|||||265|WARNING_TRANSCRIPT_NO_START_CODON,AT|downstream_gene_variant|MODIFIER|exon-XM_027334472.1-1|GENE_exon-XM_027334472.1-1|transcript|rna-XM_027334472.1|protein_coding||c.*1351_*1352insT|||||265|,AT|intron_variant|MODIFIER|exon-XM_027334473.1-1|GENE_exon-XM_027334473.1-1|transcript|rna-XM_027334473.1|protein_coding|1/9|c.15+197_15+198insA||||||,AT|non_coding_transcript_variant|MODIFIER|LOC101508367|gene-LOC101508367|transcript|XM_027334473.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.660e-01;ClippingRankSum=0.00;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=42.85;MQRankSum=-7.920e-01;QD=32.28;ReadPosRankSum=0.00;SOR=1.127;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021164.1",45332778,".","A","ATTATT","0/0","0/1",25.84,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=ATTATT|upstream_gene_variant|MODIFIER|LOC101508247|gene-LOC101508247|transcript|XM_027334816.1|protein_coding||c.-9117_-9116insTTATT|||||3715|WARNING_TRANSCRIPT_NO_START_CODON,ATTATT|upstream_gene_variant|MODIFIER|exon-XM_027334816.1-1|GENE_exon-XM_027334816.1-1|transcript|rna-XM_027334816.1|protein_coding||c.-4041_-4040insTTATT|||||3715|,ATTATT|intergenic_region|MODIFIER|exon-XM_004502584.3-1-exon-XM_027334816.1-1|GENE_exon-XM_004502584.3-1-GENE_exon-XM_027334816.1-1|intergenic_region|GENE_exon-XM_004502584.3-1-GENE_exon-XM_027334816.1-1|||n.45332778_45332779insTTATT||||||;BaseQRankSum=-8.400e-02;ClippingRankSum=0.00;DP=34;ExcessHet=3.9794;FS=3.310;MLEAC=2;MLEAF=0.500;MQ=56.96;MQRankSum=-5.570e-01;QD=2.58;ReadPosRankSum=-1.834e+00;SOR=2.303;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021164.1",46207869,".","GA","G","0/0","0/1",180.43,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_004502999.1-1|GENE_exon-XM_004502999.1-1|transcript|rna-XM_004502999.1|protein_coding|1/2|c.182+200delA||||||,G|non_coding_transcript_variant|MODIFIER|LOC101499081|gene-LOC101499081|transcript|XM_004502999.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-4.150e-01;ClippingRankSum=0.00;DP=153;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.250;MQ=57.58;MQRankSum=0.751;QD=2.61;ReadPosRankSum=1.57;SOR=0.876;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",122157,".","G","A,*","0/2","0/1",732.44,"BQB;QD2","AC=1,1;AF=0.250,0.250;AN=4;ANN=A|intragenic_variant|MODIFIER|LOC113787180|gene-LOC113787180|gene_variant|gene-LOC113787180|||n.122157G>A||||||,A|non_coding_transcript_exon_variant|MODIFIER|exon-XR_003473641.1-1|GENE_exon-XR_003473641.1-1|transcript|rna-XR_003473641.1|pseudogene|1/2|n.135C>T||||||;BaseQRankSum=4.09;ClippingRankSum=0.00;DP=441;ExcessHet=4.7712;FS=2.184;MLEAC=1,1;MLEAF=0.250,0.250;MQ=42.13;MQRankSum=-2.163e+00;QD=1.89;ReadPosRankSum=0.523;SOR=0.513;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",1349335,".","T","C","0/1","1/1",902.81,"MQ40;map;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004503126.3-1-exon-XM_027335424.1-1|GENE_exon-XM_004503126.3-1-GENE_exon-XM_027335424.1-1|intergenic_region|GENE_exon-XM_004503126.3-1-GENE_exon-XM_027335424.1-1|||n.1349335T>C||||||;BaseQRankSum=2.21;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=38.246;MLEAC=3;MLEAF=0.750;MQ=30.06;MQRankSum=-2.376e+00;QD=18.06;ReadPosRankSum=2.05;SOR=4.704;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",1492963,".","C","T","0/1","0/0",250.19,"BQB","AC=1;AF=0.250;AN=4;ANN=T|splice_region_variant&intron_variant|LOW|exon-XM_012716578.2-1|GENE_exon-XM_012716578.2-1|transcript|rna-XM_012716578.2|protein_coding|6/15|c.418-4C>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC101500456|gene-LOC101500456|transcript|XM_012716578.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.65;ClippingRankSum=0.00;DP=140;ExcessHet=3.0103;FS=33.997;MLEAC=1;MLEAF=0.250;MQ=58.66;MQRankSum=-4.638e+00;QD=3.68;ReadPosRankSum=-3.220e-01;SOR=4.974;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",1683700,".","A","T","0/0","0/1",1097.87,"PASS","AC=1;AF=0.250;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_004503155.3-1|GENE_exon-XM_004503155.3-1|transcript|rna-XM_004503155.3|protein_coding|1/1|c.502T>A|p.Phe168Ile|598/679|502/513|168/170||,T|upstream_gene_variant|MODIFIER|TRNAP-AGG|gene-TRNAP-AGG-11|transcript|rna-TRNAP-AGG-11|protein_coding||c.-651A>T|||||651|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101504080|gene-LOC101504080|transcript|XM_004503154.3|protein_coding||c.*5821A>T|||||2295|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004503154.3-1|GENE_exon-XM_004503154.3-1|transcript|rna-XM_004503154.3|protein_coding||c.*2885A>T|||||2295|,T|downstream_gene_variant|MODIFIER|LOC101504709|LOC101504709|transcript|gene-LOC101504709|pseudogene||n.*835T>A|||||835|,T|intron_variant|MODIFIER|exon-XM_027335832.1-1|GENE_exon-XM_027335832.1-1|transcript|rna-XM_027335832.1|protein_coding|1/1|c.412+90T>A||||||,T|intron_variant|MODIFIER|exon-XM_027335830.1-1|GENE_exon-XM_027335830.1-1|transcript|rna-XM_027335830.1|protein_coding|1/1|c.412+90T>A||||||,T|intron_variant|MODIFIER|exon-XM_027335831.1-1|GENE_exon-XM_027335831.1-1|transcript|rna-XM_027335831.1|protein_coding|1/1|c.412+90T>A||||||,T|intron_variant|MODIFIER|exon-XM_027335829.1-1|GENE_exon-XM_027335829.1-1|transcript|rna-XM_027335829.1|protein_coding|1/1|c.412+90T>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC101504387|gene-LOC101504387|transcript|XM_004503155.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101504387|gene-LOC101504387|transcript|XM_027335832.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101504387|gene-LOC101504387|transcript|XM_027335830.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101504387|gene-LOC101504387|transcript|XM_027335831.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101504387|gene-LOC101504387|transcript|XM_027335829.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.387e+00;ClippingRankSum=0.00;DP=200;ExcessHet=3.9794;FS=38.344;MLEAC=2;MLEAF=0.500;MQ=57.42;MQRankSum=-6.200e+00;QD=12.48;ReadPosRankSum=-6.117e+00;SOR=2.801;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",3175105,".","A","G","0/1","0/0",251.82,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027335701.1-1-exon-XM_027336180.1-1|GENE_exon-XM_027335701.1-1-GENE_exon-XM_027336180.1-1|intergenic_region|GENE_exon-XM_027335701.1-1-GENE_exon-XM_027336180.1-1|||n.3175105A>G||||||;BaseQRankSum=-8.148e+00;ClippingRankSum=0.00;DP=409;ExcessHet=3.9794;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.22;MQRankSum=-6.552e+00;QD=1.44;ReadPosRankSum=-3.632e+00;SOR=0.642;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
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["NC_021165.1",3700063,".","C","T","0/0","0/1",16.33,"QD2;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XR_003473544.1-1|GENE_exon-XR_003473544.1-1|transcript|rna-XR_003473544.1|pseudogene||n.-2983G>A|||||2983|,T|upstream_gene_variant|MODIFIER|exon-XM_012716728.2-1|GENE_exon-XM_012716728.2-1|transcript|rna-XM_012716728.2|protein_coding||c.-3161G>A|||||2981|,T|upstream_gene_variant|MODIFIER|exon-XM_012716729.2-1|GENE_exon-XM_012716729.2-1|transcript|rna-XM_012716729.2|protein_coding||c.-3161G>A|||||2981|,T|upstream_gene_variant|MODIFIER|exon-XM_027335852.1-1|GENE_exon-XM_027335852.1-1|transcript|rna-XM_027335852.1|protein_coding||c.-3161G>A|||||2981|,T|upstream_gene_variant|MODIFIER|exon-XR_003473543.1-1|GENE_exon-XR_003473543.1-1|transcript|rna-XR_003473543.1|pseudogene||n.-2981G>A|||||2981|,T|upstream_gene_variant|MODIFIER|exon-XR_189944.3-1|GENE_exon-XR_189944.3-1|transcript|rna-XR_189944.3|pseudogene||n.-2981G>A|||||2981|,T|upstream_gene_variant|MODIFIER|exon-XR_189945.3-1|GENE_exon-XR_189945.3-1|transcript|rna-XR_189945.3|pseudogene||n.-2981G>A|||||2981|,T|upstream_gene_variant|MODIFIER|exon-XR_189946.3-1|GENE_exon-XR_189946.3-1|transcript|rna-XR_189946.3|pseudogene||n.-2981G>A|||||2981|,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XM_012716728.2|protein_coding||c.*6949C>T|||||2981|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XR_003473544.1|pseudogene||n.*6949C>T|||||2983|,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XM_012716729.2|protein_coding||c.*6949C>T|||||2981|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XM_027335852.1|protein_coding||c.*6949C>T|||||2981|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XR_003473543.1|pseudogene||n.*6949C>T|||||2981|,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XR_189944.3|pseudogene||n.*6949C>T|||||2981|,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XR_189945.3|pseudogene||n.*6949C>T|||||2981|,T|downstream_gene_variant|MODIFIER|LOC101508684|gene-LOC101508684|transcript|XR_189946.3|pseudogene||n.*6949C>T|||||2981|,T|intergenic_region|MODIFIER|exon-XM_012716728.2-1-exon-XM_004503420.3-1|GENE_exon-XM_012716728.2-1-GENE_exon-XM_004503420.3-1|intergenic_region|GENE_exon-XM_012716728.2-1-GENE_exon-XM_004503420.3-1|||n.3700063C>T||||||;BaseQRankSum=2.74;ClippingRankSum=0.00;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=45.25;MQRankSum=0.269;QD=1.48;ReadPosRankSum=0.992;SOR=0.180;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",7192215,".","A","C","0/0","0/1",81.22,"PASS","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101495246|gene-LOC101495246|transcript|XM_004503894.3|protein_coding||c.-4990A>C|||||3079|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004503894.3-1|GENE_exon-XM_004503894.3-1|transcript|rna-XM_004503894.3|protein_coding||c.-3221A>C|||||3079|,C|upstream_gene_variant|MODIFIER|exon-XM_012716770.2-1|GENE_exon-XM_012716770.2-1|transcript|rna-XM_012716770.2|protein_coding||c.-3221A>C|||||3121|,C|upstream_gene_variant|MODIFIER|LOC101495246|gene-LOC101495246|transcript|XM_012716770.2|protein_coding||c.-4990A>C|||||3121|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101494914|gene-LOC101494914|transcript|XM_004503893.3|protein_coding||c.*6688A>C|||||3446|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004503893.3-1|GENE_exon-XM_004503893.3-1|transcript|rna-XM_004503893.3|protein_coding||c.*3812A>C|||||3446|,C|intergenic_region|MODIFIER|exon-XM_004503893.3-1-exon-XM_004503894.3-1|GENE_exon-XM_004503893.3-1-GENE_exon-XM_004503894.3-1|intergenic_region|GENE_exon-XM_004503893.3-1-GENE_exon-XM_004503894.3-1|||n.7192215A>C||||||;BaseQRankSum=-2.637e+00;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.250;MQ=46.62;MQRankSum=-2.015e+00;QD=2.14;ReadPosRankSum=1.10;SOR=0.193;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021165.1",11765466,".","G","A","0/0","0/1",53.87,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027335555.1-1-exon-XM_027335684.1-1|GENE_exon-XM_027335555.1-1-GENE_exon-XM_027335684.1-1|intergenic_region|GENE_exon-XM_027335555.1-1-GENE_exon-XM_027335684.1-1|||n.11765466G>A||||||;BaseQRankSum=1.23;ClippingRankSum=0.00;DP=28;ExcessHet=3.9794;FS=3.090;MLEAC=2;MLEAF=0.500;MQ=54.41;MQRankSum=-2.744e+00;QD=4.90;ReadPosRankSum=-1.834e+00;SOR=0.132;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",12046904,".","C","A","0/1","0/0",30.54,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004504473.3-1-exon-XR_003473226.1-1|GENE_exon-XM_004504473.3-1-GENE_exon-XR_003473226.1-1|intergenic_region|GENE_exon-XM_004504473.3-1-GENE_exon-XR_003473226.1-1|||n.12046904C>A||||||;BaseQRankSum=2.87;ClippingRankSum=0.00;DP=77;ExcessHet=3.0103;FS=3.626;MLEAC=1;MLEAF=0.250;MQ=51.37;MQRankSum=-7.060e-01;QD=0.76;ReadPosRankSum=1.13;SOR=0.215;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",12145687,".","A","G","0/1","1/1",2035.19,"BQB","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027335230.1-1-exon-XR_003473266.1-1|GENE_exon-XM_027335230.1-1-GENE_exon-XR_003473266.1-1|intergenic_region|GENE_exon-XM_027335230.1-1-GENE_exon-XR_003473266.1-1|||n.12145687A>G||||||;BaseQRankSum=-5.391e+00;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=3.185;MLEAC=3;MLEAF=0.750;MQ=42.97;MQRankSum=0.00;QD=17.39;ReadPosRankSum=-3.940e-01;SOR=1.109;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",12263186,".","G","A","0/1","1/1",3989.19,"BQB","AC=3;AF=0.750;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027335231.1-1-exon-XM_004504478.1-1|GENE_exon-XM_027335231.1-1-GENE_exon-XM_004504478.1-1|intergenic_region|GENE_exon-XM_027335231.1-1-GENE_exon-XM_004504478.1-1|||n.12263186G>A||||||;BaseQRankSum=5.69;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=0.913;MLEAC=3;MLEAF=0.750;MQ=43.70;MQRankSum=0.00;QD=34.99;ReadPosRankSum=-1.675e+00;SOR=0.826;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",13263589,".","A","G","0/0","0/1",77.41,"map","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101498302|gene-LOC101498302|transcript|XM_004504567.3|protein_coding||c.-7345A>G|||||3460|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_004504567.3-1|GENE_exon-XM_004504567.3-1|transcript|rna-XM_004504567.3|protein_coding||c.-3646A>G|||||3460|,G|upstream_gene_variant|MODIFIER|exon-XM_004504568.3-1|GENE_exon-XM_004504568.3-1|transcript|rna-XM_004504568.3|protein_coding||c.-3646A>G|||||3460|,G|upstream_gene_variant|MODIFIER|exon-XM_004504569.3-1|GENE_exon-XM_004504569.3-1|transcript|rna-XM_004504569.3|protein_coding||c.-3646A>G|||||3460|,G|upstream_gene_variant|MODIFIER|LOC101498302|gene-LOC101498302|transcript|XM_004504568.3|protein_coding||c.-7345A>G|||||3460|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|LOC101498302|gene-LOC101498302|transcript|XM_004504569.3|protein_coding||c.-7345A>G|||||3460|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004504566.3-1-exon-XM_004504567.3-1|GENE_exon-XM_004504566.3-1-GENE_exon-XM_004504567.3-1|intergenic_region|GENE_exon-XM_004504566.3-1-GENE_exon-XM_004504567.3-1|||n.13263589A>G||||||;BaseQRankSum=-3.319e+00;ClippingRankSum=0.00;DP=73;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.250;MQ=50.06;MQRankSum=-4.268e+00;QD=2.35;ReadPosRankSum=-1.382e+00;SOR=1.235;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",14469848,".","G","A","1/1","0/1",696.28,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101515687|LOC101515687|transcript|gene-LOC101515687|pseudogene||n.-3771C>T|||||3771|,A|intergenic_region|MODIFIER|LOC101515687-exon-XM_012716950.2-1|LOC101515687-GENE_exon-XM_012716950.2-1|intergenic_region|LOC101515687-GENE_exon-XM_012716950.2-1|||n.14469848G>A||||||;BaseQRankSum=1.70;ClippingRankSum=0.00;DP=18;ExcessHet=3.0103;FS=10.086;MLEAC=3;MLEAF=0.750;MQ=23.66;MQRankSum=3.47;QD=30.59;ReadPosRankSum=-1.453e+00;SOR=1.927;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",15160294,".","G","A","1/1","0/1",1479.19,"mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|downstream_gene_variant|MODIFIER|UGT78K4|gene-UGT78K4|transcript|XM_004504806.3|protein_coding||c.*4362G>A|||||2792|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004504806.3-1|GENE_exon-XM_004504806.3-1|transcript|rna-XM_004504806.3|protein_coding||c.*2950G>A|||||2792|,A|intergenic_region|MODIFIER|exon-XM_004504806.3-1-exon-XM_004504807.2-1|GENE_exon-XM_004504806.3-1-GENE_exon-XM_004504807.2-1|intergenic_region|GENE_exon-XM_004504806.3-1-GENE_exon-XM_004504807.2-1|||n.15160294G>A||||||;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=42.99;QD=25.38;SOR=1.148;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",15652026,".","G","T","0/0","0/1",78.87,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_027335619.1-1|GENE_exon-XM_027335619.1-1|transcript|rna-XM_027335619.1|protein_coding|3/5|c.786-64G>T||||||,T|intron_variant|MODIFIER|exon-XM_027335618.1-1|GENE_exon-XM_027335618.1-1|transcript|rna-XM_027335618.1|protein_coding|4/6|c.1004+34G>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC101495572|gene-LOC101495572|transcript|XM_027335618.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101495572|gene-LOC101495572|transcript|XM_027335619.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=2.64;ClippingRankSum=0.00;DP=21;ExcessHet=3.9794;FS=6.990;MLEAC=2;MLEAF=0.500;MQ=52.65;MQRankSum=-2.638e+00;QD=7.89;ReadPosRankSum=0.674;SOR=2.812;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",17447784,".","A","G","0/1","0/0",32.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004505052.3-1|GENE_exon-XM_004505052.3-1|transcript|rna-XM_004505052.3|protein_coding|2/2|c.1078A>G|p.Ile360Val|1251/1967|1078/1560|360/519||,G|upstream_gene_variant|MODIFIER|LOC101499605|gene-LOC101499605|transcript|XM_004505335.3|protein_coding||c.-6682A>G|||||4948|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|CYP93C3|gene-CYP93C3|transcript|NM_001309700.2|protein_coding||c.*6071A>G|||||4014|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-NM_001309700.2-1|GENE_exon-NM_001309700.2-1|transcript|rna-NM_001309700.2|protein_coding||c.*4283A>G|||||4014|,G|downstream_gene_variant|MODIFIER|exon-XM_004505335.3-1|GENE_exon-XM_004505335.3-1|transcript|rna-XM_004505335.3|protein_coding||c.*5160T>C|||||4948|,G|non_coding_transcript_variant|MODIFIER|LOC101495803|gene-LOC101495803|transcript|XM_004505052.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-2.988e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=16.519;MLEAC=1;MLEAF=0.250;MQ=57.61;MQRankSum=-6.897e+00;QD=0.66;ReadPosRankSum=-7.660e-01;SOR=3.600;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",18362327,".","G","A","0/1","0/0",236.87,"BQB","AC=1;AF=0.250;AN=4;ANN=A|synonymous_variant|LOW|exon-XM_027335562.1-1|GENE_exon-XM_027335562.1-1|transcript|rna-XM_027335562.1|protein_coding|4/10|c.483C>T|p.Tyr161Tyr|674/1777|483/1302|161/433||,A|synonymous_variant|LOW|exon-XM_004505161.3-1|GENE_exon-XM_004505161.3-1|transcript|rna-XM_004505161.3|protein_coding|3/9|c.597C>T|p.Tyr199Tyr|767/1870|597/1416|199/471||,A|non_coding_transcript_variant|MODIFIER|LOC101501203|gene-LOC101501203|transcript|XM_004505161.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101501203|gene-LOC101501203|transcript|XM_027335562.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=5.29;ClippingRankSum=0.00;DP=165;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.85;MQRankSum=-8.764e+00;QD=3.04;ReadPosRankSum=3.95;SOR=0.636;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",19569068,".","C","T","0/1","0/0",109.87,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|TRNAT-CGU-exon-XM_004505300.3-1|gene-TRNAT-CGU-GENE_exon-XM_004505300.3-1|intergenic_region|gene-TRNAT-CGU-GENE_exon-XM_004505300.3-1|||n.19569068C>T||||||;BaseQRankSum=3.62;ClippingRankSum=0.00;DP=46;ExcessHet=3.9794;FS=14.287;MLEAC=2;MLEAF=0.500;MQ=55.89;MQRankSum=-4.006e+00;QD=4.78;ReadPosRankSum=-2.980e-01;SOR=3.596;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",21261933,".","G","A","0/1","0/0",42.22,"QD2","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101509104|gene-LOC101509104|transcript|XM_004505435.3|protein_coding||c.*3961G>A|||||3175|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004505435.3-1|GENE_exon-XM_004505435.3-1|transcript|rna-XM_004505435.3|protein_coding||c.*3382G>A|||||3175|,A|intergenic_region|MODIFIER|exon-XM_004505435.3-1-exon-XM_004505437.3-1|GENE_exon-XM_004505435.3-1-GENE_exon-XM_004505437.3-1|intergenic_region|GENE_exon-XM_004505435.3-1-GENE_exon-XM_004505437.3-1|||n.21261933G>A||||||;BaseQRankSum=3.65;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=12.506;MLEAC=1;MLEAF=0.250;MQ=57.38;MQRankSum=-6.491e+00;QD=0.83;ReadPosRankSum=0.186;SOR=3.611;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",22894127,".","C","G","0/1","0/0",317.87,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004505583.3-1-exon-XM_004505584.3-1|GENE_exon-XM_004505583.3-1-GENE_exon-XM_004505584.3-1|intergenic_region|GENE_exon-XM_004505583.3-1-GENE_exon-XM_004505584.3-1|||n.22894127C>G||||||;BaseQRankSum=-1.469e+00;ClippingRankSum=0.00;DP=140;ExcessHet=3.9794;FS=12.613;MLEAC=2;MLEAF=0.500;MQ=57.89;MQRankSum=-7.937e+00;QD=4.89;ReadPosRankSum=1.90;SOR=2.603;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",23332071,".","A","G","0/1","0/0",182.73,"BQB","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101502048|gene-LOC101502048|transcript|XM_027335267.1|protein_coding||c.*3248A>G|||||149|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_027335267.1-1|GENE_exon-XM_027335267.1-1|transcript|rna-XM_027335267.1|protein_coding||c.*149A>G|||||149|,G|intergenic_region|MODIFIER|exon-XM_027335267.1-1-exon-XM_012717242.1-1|GENE_exon-XM_027335267.1-1-GENE_exon-XM_012717242.1-1|intergenic_region|GENE_exon-XM_027335267.1-1-GENE_exon-XM_012717242.1-1|||n.23332071A>G||||||;BaseQRankSum=-5.283e+00;ClippingRankSum=0.00;DP=150;ExcessHet=3.0103;FS=10.484;MLEAC=1;MLEAF=0.250;MQ=58.67;MQRankSum=-7.759e+00;QD=2.31;ReadPosRankSum=-1.519e+00;SOR=2.287;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",23444624,".","T","G","0/1","1/1",4055.19,"BQB","AC=3;AF=0.750;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004505637.3-1|GENE_exon-XM_004505637.3-1|transcript|rna-XM_004505637.3|protein_coding|4/8|c.321T>G|p.Ser107Arg|493/1177|321/777|107/258||,G|non_coding_transcript_variant|MODIFIER|LOC101493237|gene-LOC101493237|transcript|XM_004505637.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-6.451e+00;ClippingRankSum=0.00;DP=128;ExcessHet=3.0103;FS=2.677;MLEAC=3;MLEAF=0.750;MQ=43.08;MQRankSum=0.00;QD=31.68;ReadPosRankSum=-2.020e+00;SOR=0.426;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",23920681,".","T","G","0/1","1/1",2542.19,"PASS","AC=3;AF=0.750;AN=4;ANN=G|5_prime_UTR_variant|MODIFIER|exon-XM_004505680.3-1|GENE_exon-XM_004505680.3-1|transcript|rna-XM_004505680.3|protein_coding|1/9|c.-240A>C|||||240|,G|non_coding_transcript_variant|MODIFIER|LOC101507427|gene-LOC101507427|transcript|XM_004505680.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.140e+00;ClippingRankSum=0.00;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=44.07;MQRankSum=0.342;QD=18.29;ReadPosRankSum=-1.394e+00;SOR=0.759;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",24117952,".","C","G","0/1","1/1",1906.19,"PASS","AC=3;AF=0.750;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101505579|gene-LOC101505579|transcript|XM_012717234.2|protein_coding||c.-2950C>G|||||376|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_012717234.2-1|GENE_exon-XM_012717234.2-1|transcript|rna-XM_012717234.2|protein_coding||c.-511C>G|||||376|,G|intergenic_region|MODIFIER|exon-XM_027335808.1-1-exon-XM_012717234.2-1|GENE_exon-XM_027335808.1-1-GENE_exon-XM_012717234.2-1|intergenic_region|GENE_exon-XM_027335808.1-1-GENE_exon-XM_012717234.2-1|||n.24117952C>G||||||;BaseQRankSum=3.09;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=5.732;MLEAC=3;MLEAF=0.750;MQ=46.80;MQRankSum=-7.240e-01;QD=16.87;ReadPosRankSum=-4.440e-01;SOR=0.854;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",24233809,".","T","G","0/1","1/1",877.19,"mrd30","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004505716.3-1-exon-NM_001309694.1-1|GENE_exon-XM_004505716.3-1-GENE_exon-NM_001309694.1-1|intergenic_region|GENE_exon-XM_004505716.3-1-GENE_exon-NM_001309694.1-1|||n.24233809T>G||||||;BaseQRankSum=-1.739e+00;ClippingRankSum=0.00;DP=65;ExcessHet=3.0103;FS=4.203;MLEAC=3;MLEAF=0.750;MQ=45.27;MQRankSum=3.88;QD=13.50;ReadPosRankSum=1.55;SOR=1.491;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",24673213,".","C","T","0/1","0/0",154.44,"BQB;map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004505770.3-1|GENE_exon-XM_004505770.3-1|transcript|rna-XM_004505770.3|protein_coding||c.-4922G>A|||||4682|,T|downstream_gene_variant|MODIFIER|LOC101511150|gene-LOC101511150|transcript|XM_004505770.3|protein_coding||c.*5515C>T|||||4682|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004505770.3-1-exon-XR_001144153.2-1|GENE_exon-XM_004505770.3-1-GENE_exon-XR_001144153.2-1|intergenic_region|GENE_exon-XM_004505770.3-1-GENE_exon-XR_001144153.2-1|||n.24673213C>T||||||;BaseQRankSum=5.18;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=14.462;MLEAC=1;MLEAF=0.250;MQ=42.39;MQRankSum=-1.829e+00;QD=2.57;ReadPosRankSum=2.31;SOR=2.764;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",24719357,".","C","T","1/1","0/1",842.71,"map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004505770.3-1-exon-XR_001144153.2-1|GENE_exon-XM_004505770.3-1-GENE_exon-XR_001144153.2-1|intergenic_region|GENE_exon-XM_004505770.3-1-GENE_exon-XR_001144153.2-1|||n.24719357C>T||||||;BaseQRankSum=0.151;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=45.36;MQRankSum=0.00;QD=30.52;ReadPosRankSum=-6.460e-01;SOR=1.802;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",24885259,".","G","A","0/0","0/1",58.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004505775.3-1-exon-XR_003473937.1-1|GENE_exon-XM_004505775.3-1-GENE_exon-XR_003473937.1-1|intergenic_region|GENE_exon-XM_004505775.3-1-GENE_exon-XR_003473937.1-1|||n.24885259G>A||||||;BaseQRankSum=0.872;ClippingRankSum=0.00;DP=52;ExcessHet=3.0103;FS=12.155;MLEAC=1;MLEAF=0.250;MQ=49.03;MQRankSum=2.28;QD=2.91;ReadPosRankSum=3.56;SOR=0.020;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",24981738,".","G","GA","0/1","1/1",2115.15,"PASS","AC=3;AF=0.750;AN=4;ANN=GA|non_coding_transcript_exon_variant|MODIFIER|LOC101489112|LOC101489112|transcript|gene-LOC101489112|pseudogene|5/8|n.647dupA||||||INFO_REALIGN_3_PRIME;BaseQRankSum=1.29;ClippingRankSum=0.00;DP=150;ExcessHet=3.0103;FS=6.859;MLEAC=3;MLEAF=0.750;MQ=44.81;MQRankSum=0.882;QD=15.33;ReadPosRankSum=1.26;SOR=0.333;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",25241095,".","C","G","0/0","0/1",249.2,"map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004505782.3-1-exon-XM_004505784.3-1|GENE_exon-XM_004505782.3-1-GENE_exon-XM_004505784.3-1|intergenic_region|GENE_exon-XM_004505782.3-1-GENE_exon-XM_004505784.3-1|||n.25241095C>G||||||;BaseQRankSum=0.074;ClippingRankSum=0.00;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=40.44;MQRankSum=-2.260e-01;QD=2.31;ReadPosRankSum=0.030;SOR=0.624;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021165.1",25415948,".","G","A","0/0","0/1",48.33,"MQ40;QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004505786.1-1-exon-XM_012717277.2-1|GENE_exon-XM_004505786.1-1-GENE_exon-XM_012717277.2-1|intergenic_region|GENE_exon-XM_004505786.1-1-GENE_exon-XM_012717277.2-1|||n.25415948G>A||||||;BaseQRankSum=2.54;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=37.67;MQRankSum=-2.349e+00;QD=1.42;ReadPosRankSum=-5.630e-01;SOR=0.473;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",25672145,".","TTTTAGATTTAGATTTTAGCTTTTAGGA","T","0/1","1/1",1210.15,"MQ40;map;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027335271.1-1-exon-XR_003473194.1-1|GENE_exon-XM_027335271.1-1-GENE_exon-XR_003473194.1-1|intergenic_region|GENE_exon-XM_027335271.1-1-GENE_exon-XR_003473194.1-1|||n.25672146_25672172delTTTAGATTTAGATTTTAGCTTTTAGGA||||||;BaseQRankSum=-6.890e-01;ClippingRankSum=0.00;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=31.76;MQRankSum=1.85;QD=34.58;ReadPosRankSum=-2.566e+00;SOR=2.833;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021165.1",29046908,".","A","AT","0/0","0/1",361.15,"PASS","AC=1;AF=0.250;AN=4;ANN=AT|intergenic_region|MODIFIER|LOC101507318-LOC113786986|LOC101507318-LOC113786986|intergenic_region|LOC101507318-LOC113786986|||n.29046908_29046909insT||||||;BaseQRankSum=-3.340e-01;ClippingRankSum=0.00;DP=112;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.250;MQ=59.80;MQRankSum=0.107;QD=5.31;ReadPosRankSum=-1.088e+00;SOR=0.907;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",29500481,".","C","T","0/1","1/1",493.45,"map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027335278.1-1-exon-XM_004506047.3-1|GENE_exon-XM_027335278.1-1-GENE_exon-XM_004506047.3-1|intergenic_region|GENE_exon-XM_027335278.1-1-GENE_exon-XM_004506047.3-1|||n.29500481C>T||||||;BaseQRankSum=1.65;ClippingRankSum=0.00;DP=23;ExcessHet=3.0103;FS=3.617;MLEAC=3;MLEAF=0.750;MQ=42.59;MQRankSum=1.65;QD=21.45;ReadPosRankSum=0.00;SOR=0.793;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",29599077,".","G","T","1/1","0/0",269.04,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027335278.1-1-exon-XM_004506047.3-1|GENE_exon-XM_027335278.1-1-GENE_exon-XM_004506047.3-1|intergenic_region|GENE_exon-XM_027335278.1-1-GENE_exon-XM_004506047.3-1|||n.29599077G>T||||||;BaseQRankSum=1.90;ClippingRankSum=0.00;DP=33;ExcessHet=0.7918;FS=20.202;MLEAC=3;MLEAF=0.750;MQ=37.07;MQRankSum=1.68;QD=20.70;ReadPosRankSum=0.00;SOR=2.780;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",29726314,".","T","C","0/0","0/1",35.19,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_027335278.1-1-exon-XM_004506047.3-1|GENE_exon-XM_027335278.1-1-GENE_exon-XM_004506047.3-1|intergenic_region|GENE_exon-XM_027335278.1-1-GENE_exon-XM_004506047.3-1|||n.29726314T>C||||||;BaseQRankSum=-3.702e+00;ClippingRankSum=0.00;DP=275;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.250;MQ=40.42;MQRankSum=-1.650e+00;QD=0.27;ReadPosRankSum=-8.930e-01;SOR=0.916;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",29869801,".","GTTA","G","0/0","0/1",394.15,"mrd30","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XR_001144166.2-1|GENE_exon-XR_001144166.2-1|transcript|rna-XR_001144166.2|pseudogene|1/9|n.174-140_174-138delTAA||||||,G|intron_variant|MODIFIER|exon-XR_001144167.2-1|GENE_exon-XR_001144167.2-1|transcript|rna-XR_001144167.2|pseudogene|1/9|n.174-140_174-138delTAA||||||,G|intron_variant|MODIFIER|exon-XR_001144168.2-1|GENE_exon-XR_001144168.2-1|transcript|rna-XR_001144168.2|pseudogene|1/9|n.174-140_174-138delTAA||||||,G|intron_variant|MODIFIER|exon-XM_004506051.3-1|GENE_exon-XM_004506051.3-1|transcript|rna-XM_004506051.3|protein_coding|1/8|c.-202+137_-201-138delTAA||||||,G|intron_variant|MODIFIER|exon-XM_012717350.2-1|GENE_exon-XM_012717350.2-1|transcript|rna-XM_012717350.2|protein_coding|1/8|c.-180+137_-179-138delTAA||||||,G|intron_variant|MODIFIER|exon-XM_004506048.3-1|GENE_exon-XM_004506048.3-1|transcript|rna-XM_004506048.3|protein_coding|1/8|c.-201-140_-201-138delTAA||||||,G|intron_variant|MODIFIER|exon-XM_004506049.3-1|GENE_exon-XM_004506049.3-1|transcript|rna-XM_004506049.3|protein_coding|1/8|c.-180-140_-180-138delTAA||||||,G|intron_variant|MODIFIER|exon-XM_004506050.3-1|GENE_exon-XM_004506050.3-1|transcript|rna-XM_004506050.3|protein_coding|1/8|c.-179-140_-179-138delTAA||||||,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XM_004506048.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XR_001144166.2|pseudogene||||||||,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XR_001144167.2|pseudogene||||||||,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XR_001144168.2|pseudogene||||||||,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XM_004506051.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XM_012717350.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XM_004506049.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101494922|gene-LOC101494922|transcript|XM_004506050.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=0.209;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.58;MQRankSum=-1.819e+00;QD=13.59;ReadPosRankSum=-8.300e-01;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",30251806,".","AAATAATAAT","A","0/0","0/1",448.15,"PASS","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC113786988-exon-XM_004506073.2-1|LOC113786988-GENE_exon-XM_004506073.2-1|intergenic_region|LOC113786988-GENE_exon-XM_004506073.2-1|||n.30251807_30251815delAATAATAAT||||||;BaseQRankSum=1.87;ClippingRankSum=0.00;DP=88;ExcessHet=3.0103;FS=5.460;MLEAC=1;MLEAF=0.250;MQ=58.60;MQRankSum=-5.422e+00;QD=13.58;ReadPosRankSum=-8.020e-01;SOR=1.546;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",30463688,".","T","G","0/0","0/1",352.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101504719|gene-LOC101504719|transcript|XM_004506079.3|protein_coding||c.*6687T>G|||||4206|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004506079.3-1|GENE_exon-XM_004506079.3-1|transcript|rna-XM_004506079.3|protein_coding||c.*4383T>G|||||4206|,G|downstream_gene_variant|MODIFIER|exon-XM_027335201.1-1|GENE_exon-XM_027335201.1-1|transcript|rna-XM_027335201.1|protein_coding||c.*4383T>G|||||4206|,G|downstream_gene_variant|MODIFIER|LOC101504719|gene-LOC101504719|transcript|XM_027335201.1|protein_coding||c.*6433T>G|||||4206|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|exon-XM_004506080.3-1|GENE_exon-XM_004506080.3-1|transcript|rna-XM_004506080.3|protein_coding|5/8|c.838-36T>G||||||,G|intron_variant|MODIFIER|exon-XM_004506081.3-1|GENE_exon-XM_004506081.3-1|transcript|rna-XM_004506081.3|protein_coding|5/8|c.838-66T>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101505045|gene-LOC101505045|transcript|XM_004506080.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101505045|gene-LOC101505045|transcript|XM_004506081.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.189e+00;ClippingRankSum=0.00;DP=89;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=7.19;ReadPosRankSum=0.608;SOR=0.481;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",30709222,".","C","CA","0/1","0/0",39.15,"QD2","AC=1;AF=0.250;AN=4;ANN=CA|downstream_gene_variant|MODIFIER|exon-XR_190041.3-1|GENE_exon-XR_190041.3-1|transcript|rna-XR_190041.3|pseudogene||n.*4326_*4327insT|||||4326|,CA|intergenic_region|MODIFIER|LOC101509758-exon-XR_190041.3-1|gene-LOC101509758-GENE_exon-XR_190041.3-1|intergenic_region|gene-LOC101509758-GENE_exon-XR_190041.3-1|||n.30709222_30709223insA||||||;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=87;ExcessHet=3.0103;FS=6.320;MLEAC=1;MLEAF=0.250;MQ=58.97;MQRankSum=-6.556e+00;QD=0.87;ReadPosRankSum=1.43;SOR=2.279;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",31291688,".","G","T","0/1","0/0",225.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|exon-XR_001144176.2-1|GENE_exon-XR_001144176.2-1|transcript|rna-XR_001144176.2|pseudogene||n.*1713G>T|||||1713|,T|intergenic_region|MODIFIER|exon-XR_001144176.2-1-exon-XR_003473780.1-1|GENE_exon-XR_001144176.2-1-GENE_exon-XR_003473780.1-1|intergenic_region|GENE_exon-XR_001144176.2-1-GENE_exon-XR_003473780.1-1|||n.31291688G>T||||||;BaseQRankSum=3.29;ClippingRankSum=0.00;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=58.65;MQRankSum=-5.259e+00;QD=3.57;ReadPosRankSum=1.41;SOR=0.527;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021165.1",33218510,".","C","T","0/1","0/0",123.19,"BQB","AC=1;AF=0.250;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_004506255.1-1|GENE_exon-XM_004506255.1-1|transcript|rna-XM_004506255.1|protein_coding|1/1|c.787C>T|p.Pro263Ser|787/1179|787/1179|263/392||,T|non_coding_transcript_variant|MODIFIER|LOC101514497|gene-LOC101514497|transcript|XM_004506255.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.82;ClippingRankSum=0.00;DP=124;ExcessHet=3.0103;FS=19.988;MLEAC=1;MLEAF=0.250;MQ=56.90;MQRankSum=-7.240e+00;QD=2.28;ReadPosRankSum=1.50;SOR=4.168;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",33298816,".","C","G","0/0","0/1",59.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004506255.1-1-exon-XM_004506257.3-1|GENE_exon-XM_004506255.1-1-GENE_exon-XM_004506257.3-1|intergenic_region|GENE_exon-XM_004506255.1-1-GENE_exon-XM_004506257.3-1|||n.33298816C>G||||||;BaseQRankSum=-1.360e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=11.514;MLEAC=1;MLEAF=0.250;MQ=57.85;MQRankSum=-4.863e+00;QD=0.99;ReadPosRankSum=-2.840e-01;SOR=0.391;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",33348238,".","C","T","0/1","0/0",183.87,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004506255.1-1-exon-XM_004506257.3-1|GENE_exon-XM_004506255.1-1-GENE_exon-XM_004506257.3-1|intergenic_region|GENE_exon-XM_004506255.1-1-GENE_exon-XM_004506257.3-1|||n.33348238C>T||||||;BaseQRankSum=2.30;ClippingRankSum=0.00;DP=34;ExcessHet=3.9794;FS=8.512;MLEAC=2;MLEAF=0.500;MQ=49.89;MQRankSum=-2.022e+00;QD=9.19;ReadPosRankSum=0.464;SOR=2.236;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",33555492,".","T","C","1/1","0/1",474.62,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004506258.3-1-exon-XM_004506259.3-1|GENE_exon-XM_004506258.3-1-GENE_exon-XM_004506259.3-1|intergenic_region|GENE_exon-XM_004506258.3-1-GENE_exon-XM_004506259.3-1|||n.33555492T>C||||||;BaseQRankSum=-1.521e+00;ClippingRankSum=0.00;DP=33;ExcessHet=3.0103;FS=15.465;MLEAC=3;MLEAF=0.750;MQ=33.50;MQRankSum=3.42;QD=14.38;ReadPosRankSum=-7.290e-01;SOR=5.646;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",34169283,".","A","T","0/0","0/1",584.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027335506.1-1-LOC101512433|GENE_exon-XM_027335506.1-1-LOC101512433|intergenic_region|GENE_exon-XM_027335506.1-1-LOC101512433|||n.34169283A>T||||||;BaseQRankSum=-2.434e+00;ClippingRankSum=0.00;DP=186;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.250;MQ=58.67;MQRankSum=1.22;QD=6.21;ReadPosRankSum=1.02;SOR=0.504;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",34475267,".","C","T","0/0","0/1",58.32,"QD2;map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101498972|gene-LOC101498972|transcript|XM_004506284.3|protein_coding||c.-8230C>T|||||1632|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004506284.3-1|GENE_exon-XM_004506284.3-1|transcript|rna-XM_004506284.3|protein_coding||c.*1936G>A|||||1632|,T|intergenic_region|MODIFIER|exon-XM_027335798.1-1-exon-XM_004506284.3-1|GENE_exon-XM_027335798.1-1-GENE_exon-XM_004506284.3-1|intergenic_region|GENE_exon-XM_027335798.1-1-GENE_exon-XM_004506284.3-1|||n.34475267C>T||||||;BaseQRankSum=1.14;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=5.981;MLEAC=2;MLEAF=0.500;MQ=52.71;MQRankSum=-6.719e+00;QD=0.67;ReadPosRankSum=0.465;SOR=1.549;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",34742320,".","C","T","0/1","0/0",26.48,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027335292.1-1-exon-XM_004506293.3-1|GENE_exon-XM_027335292.1-1-GENE_exon-XM_004506293.3-1|intergenic_region|GENE_exon-XM_027335292.1-1-GENE_exon-XM_004506293.3-1|||n.34742320C>T||||||;BaseQRankSum=2.52;ClippingRankSum=0.00;DP=52;ExcessHet=3.0103;FS=14.018;MLEAC=1;MLEAF=0.250;MQ=51.83;MQRankSum=-3.554e+00;QD=1.20;ReadPosRankSum=0.685;SOR=3.598;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",35165232,".","C","T","0/1","0/0",19.07,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004506332.1-1-exon-XM_004506306.3-1|GENE_exon-XM_004506332.1-1-GENE_exon-XM_004506306.3-1|intergenic_region|GENE_exon-XM_004506332.1-1-GENE_exon-XM_004506306.3-1|||n.35165232C>T||||||;BaseQRankSum=0.596;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.250;MQ=52.28;MQRankSum=-2.780e+00;QD=0.66;ReadPosRankSum=-2.860e-01;SOR=1.270;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",35596132,".","G","A","0/1","0/0",147.26,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004506315.3-1|GENE_exon-XM_004506315.3-1|transcript|rna-XM_004506315.3|protein_coding||c.-3448C>T|||||3331|,A|upstream_gene_variant|MODIFIER|LOC105852348|gene-LOC105852348|transcript|XM_012717400.1|protein_coding||c.-1313G>A|||||469|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101509210|gene-LOC101509210|transcript|XM_004506315.3|protein_coding||c.*14788G>A|||||3331|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012717400.1-1|GENE_exon-XM_012717400.1-1|transcript|rna-XM_012717400.1|protein_coding||c.*469C>T|||||469|,A|intergenic_region|MODIFIER|exon-XM_004506315.3-1-exon-XM_012717400.1-1|GENE_exon-XM_004506315.3-1-GENE_exon-XM_012717400.1-1|intergenic_region|GENE_exon-XM_004506315.3-1-GENE_exon-XM_012717400.1-1|||n.35596132G>A||||||;BaseQRankSum=2.83;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=9.890;MLEAC=1;MLEAF=0.250;MQ=40.69;MQRankSum=0.543;QD=10.52;ReadPosRankSum=1.32;SOR=2.217;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",35789114,".","T","C","0/1","0/0",248.19,"BQB","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101510505|gene-LOC101510505|transcript|XM_004506319.2|protein_coding||c.-7918T>C|||||4378|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004506319.2-1|GENE_exon-XM_004506319.2-1|transcript|rna-XM_004506319.2|protein_coding||c.-4851T>C|||||4378|,C|intergenic_region|MODIFIER|exon-XR_003473738.1-1-exon-XM_004506319.2-1|GENE_exon-XR_003473738.1-1-GENE_exon-XM_004506319.2-1|intergenic_region|GENE_exon-XR_003473738.1-1-GENE_exon-XM_004506319.2-1|||n.35789114T>C||||||;BaseQRankSum=-4.589e+00;ClippingRankSum=0.00;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=56.25;MQRankSum=-6.933e+00;QD=4.51;ReadPosRankSum=-5.580e-01;SOR=0.839;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",35919578,".","C","T","0/0","0/1",347.19,"BQB","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101493015|gene-LOC101493015|transcript|XM_004506337.1|protein_coding||c.-7099C>T|||||4987|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004506337.1-1|GENE_exon-XM_004506337.1-1|transcript|rna-XM_004506337.1|protein_coding||c.-4987C>T|||||4987|,T|intron_variant|MODIFIER|LOC113786994|LOC113786994|transcript|gene-LOC113786994|pseudogene|1/2|n.561+82C>T||||||;BaseQRankSum=4.22;ClippingRankSum=0.00;DP=92;ExcessHet=3.0103;FS=17.653;MLEAC=1;MLEAF=0.250;MQ=55.83;MQRankSum=-7.120e+00;QD=6.55;ReadPosRankSum=-1.745e+00;SOR=3.521;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",36174847,".","A","G","0/1","0/0",753.87,"BQB","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_027335720.1-1|GENE_exon-XM_027335720.1-1|transcript|rna-XM_027335720.1|protein_coding||c.-2820T>C|||||2472|,G|downstream_gene_variant|MODIFIER|LOC113787151|gene-LOC113787151|transcript|XM_027335720.1|protein_coding||c.*3598A>G|||||2472|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_027335720.1-1-exon-XR_003473368.1-1|GENE_exon-XM_027335720.1-1-GENE_exon-XR_003473368.1-1|intergenic_region|GENE_exon-XM_027335720.1-1-GENE_exon-XR_003473368.1-1|||n.36174847A>G||||||;BaseQRankSum=-4.610e+00;ClippingRankSum=0.00;DP=101;ExcessHet=3.9794;FS=21.017;MLEAC=2;MLEAF=0.500;MQ=48.48;MQRankSum=-4.782e+00;QD=18.85;ReadPosRankSum=-7.480e-01;SOR=3.032;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",36555189,".","C","T","0/0","0/1",13.09,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004506359.2-1-exon-XM_004506360.3-1|GENE_exon-XM_004506359.2-1-GENE_exon-XM_004506360.3-1|intergenic_region|GENE_exon-XM_004506359.2-1-GENE_exon-XM_004506360.3-1|||n.36555189C>T||||||;BaseQRankSum=2.52;ClippingRankSum=0.00;DP=50;ExcessHet=3.9794;FS=10.569;MLEAC=2;MLEAF=0.500;MQ=55.44;MQRankSum=-4.264e+00;QD=0.65;ReadPosRankSum=1.31;SOR=0.016;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",36771829,".","GT","G","0/1","1/1",1491.15,"PASS","AC=3;AF=0.750;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_012717411.2-1|GENE_exon-XM_012717411.2-1|transcript|rna-XM_012717411.2|protein_coding||c.-1385delA|||||1360|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,G|downstream_gene_variant|MODIFIER|LOC101504197|gene-LOC101504197|transcript|XM_012717411.2|protein_coding||c.*7369delT|||||1360|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_012717411.2-1-exon-XM_004506388.1-1|GENE_exon-XM_012717411.2-1-GENE_exon-XM_004506388.1-1|intergenic_region|GENE_exon-XM_012717411.2-1-GENE_exon-XM_004506388.1-1|||n.36771830delT||||||;BaseQRankSum=0.355;ClippingRankSum=0.00;DP=124;ExcessHet=3.0103;FS=0.729;MLEAC=3;MLEAF=0.750;MQ=42.76;MQRankSum=0.637;QD=13.31;ReadPosRankSum=-9.990e-01;SOR=0.668;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",36888939,".","A","C","0/0","0/1",269.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004506371.3-1-exon-NM_001309682.2-1|GENE_exon-XM_004506371.3-1-GENE_exon-NM_001309682.2-1|intergenic_region|GENE_exon-XM_004506371.3-1-GENE_exon-NM_001309682.2-1|||n.36888939A>C||||||;BaseQRankSum=2.95;ClippingRankSum=0.00;DP=84;ExcessHet=3.0103;FS=15.268;MLEAC=1;MLEAF=0.250;MQ=56.49;MQRankSum=-3.721e+00;QD=8.68;ReadPosRankSum=2.04;SOR=4.285;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",37140195,".","A","G","1/1","0/1",163.86,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XR_003473256.1-1|GENE_exon-XR_003473256.1-1|transcript|rna-XR_003473256.1|pseudogene||n.-1129T>C|||||1129|,G|upstream_gene_variant|MODIFIER|exon-XR_003473257.1-1|GENE_exon-XR_003473257.1-1|transcript|rna-XR_003473257.1|pseudogene||n.-1129T>C|||||1129|,G|intergenic_region|MODIFIER|exon-XR_003473256.1-1-exon-XM_004506375.3-1|GENE_exon-XR_003473256.1-1-GENE_exon-XM_004506375.3-1|intergenic_region|GENE_exon-XR_003473256.1-1-GENE_exon-XM_004506375.3-1|||n.37140195A>G||||||;BaseQRankSum=0.998;ClippingRankSum=0.00;DP=14;ExcessHet=3.0103;FS=15.611;MLEAC=3;MLEAF=0.750;MQ=38.14;MQRankSum=-1.577e+00;QD=11.70;ReadPosRankSum=2.48;SOR=4.611;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",37260911,".","C","T","0/1","0/0",62.28,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004506375.3-1-exon-XM_004506376.3-1|GENE_exon-XM_004506375.3-1-GENE_exon-XM_004506376.3-1|intergenic_region|GENE_exon-XM_004506375.3-1-GENE_exon-XM_004506376.3-1|||n.37260911C>T||||||;BaseQRankSum=3.07;ClippingRankSum=0.00;DP=18;ExcessHet=3.0103;FS=12.175;MLEAC=1;MLEAF=0.250;MQ=34.96;MQRankSum=1.94;QD=5.66;ReadPosRankSum=0.175;SOR=0.587;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",37403076,".","CATAT","C,CATATATAT","1/2","0/2",890.41,"mrd15;mrd20;mrd30","AC=1,2;AF=0.250,0.500;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004506376.3-1-exon-XM_004506377.3-1|GENE_exon-XM_004506376.3-1-GENE_exon-XM_004506377.3-1|intergenic_region|GENE_exon-XM_004506376.3-1-GENE_exon-XM_004506377.3-1|||n.37403077_37403080delATAT||||||,CATATATAT|intergenic_region|MODIFIER|exon-XM_004506376.3-1-exon-XM_004506377.3-1|GENE_exon-XM_004506376.3-1-GENE_exon-XM_004506377.3-1|intergenic_region|GENE_exon-XM_004506376.3-1-GENE_exon-XM_004506377.3-1|||n.37403080_37403081insATAT||||||;BaseQRankSum=-1.036e+00;ClippingRankSum=0.00;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,2;MLEAF=0.250,0.500;MQ=46.44;MQRankSum=0.126;QD=32.78;ReadPosRankSum=-5.890e-01;SOR=0.257;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021165.1",37994512,".","G","A","0/1","0/0",165.2,"MQ40;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004506407.1-1-exon-XM_004506396.2-1|GENE_exon-XM_004506407.1-1-GENE_exon-XM_004506396.2-1|intergenic_region|GENE_exon-XM_004506407.1-1-GENE_exon-XM_004506396.2-1|||n.37994512G>A||||||;BaseQRankSum=3.42;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=36.43;MQRankSum=1.37;QD=4.35;ReadPosRankSum=-1.264e+00;SOR=0.343;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",38089182,".","G","T","0/0","0/1",168.87,"BQB","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|LOC101488454|gene-LOC101488454|transcript|XM_004506396.2|protein_coding||c.*6815G>T|||||4109|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004506396.2-1|GENE_exon-XM_004506396.2-1|transcript|rna-XM_004506396.2|protein_coding||c.*4278G>T|||||4109|,T|intergenic_region|MODIFIER|exon-XM_004506396.2-1-exon-XM_004506399.3-1|GENE_exon-XM_004506396.2-1-GENE_exon-XM_004506399.3-1|intergenic_region|GENE_exon-XM_004506396.2-1-GENE_exon-XM_004506399.3-1|||n.38089182G>T||||||;BaseQRankSum=4.34;ClippingRankSum=0.00;DP=122;ExcessHet=3.9794;FS=24.533;MLEAC=2;MLEAF=0.500;MQ=56.84;MQRankSum=-6.032e+00;QD=2.52;ReadPosRankSum=-2.245e+00;SOR=4.803;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",38336164,".","A","G","0/0","0/1",71.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_027335751.1-1|GENE_exon-XM_027335751.1-1|transcript|rna-XM_027335751.1|protein_coding|19/20|c.2062-2684T>C||||||,G|intron_variant|MODIFIER|exon-XM_004506406.3-1|GENE_exon-XM_004506406.3-1|transcript|rna-XM_004506406.3|protein_coding|20/21|c.2221-2684T>C||||||,G|intron_variant|MODIFIER|exon-XM_012717435.2-1|GENE_exon-XM_012717435.2-1|transcript|rna-XM_012717435.2|protein_coding|20/21|c.2227-2684T>C||||||,G|intron_variant|MODIFIER|exon-XM_027335750.1-1|GENE_exon-XM_027335750.1-1|transcript|rna-XM_027335750.1|protein_coding|20/21|c.2221-2684T>C||||||,G|intron_variant|MODIFIER|exon-XR_003473466.1-1|GENE_exon-XR_003473466.1-1|transcript|rna-XR_003473466.1|pseudogene|20/21|n.2384-2684T>C||||||,G|non_coding_transcript_exon_variant|MODIFIER|LOC113787157|LOC113787157|transcript|gene-LOC113787157|pseudogene|1/1|n.675A>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101491274|gene-LOC101491274|transcript|XM_004506406.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101491274|gene-LOC101491274|transcript|XM_027335751.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101491274|gene-LOC101491274|transcript|XM_012717435.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101491274|gene-LOC101491274|transcript|XM_027335750.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101491274|gene-LOC101491274|transcript|XR_003473466.1|pseudogene||||||||;BaseQRankSum=-3.911e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=12.357;MLEAC=1;MLEAF=0.250;MQ=58.28;MQRankSum=-8.156e+00;QD=1.05;ReadPosRankSum=-2.488e+00;SOR=3.551;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",38505314,".","A","G","0/0","0/1",219.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_012717431.2-1-exon-XR_190066.3-1|GENE_exon-XM_012717431.2-1-GENE_exon-XR_190066.3-1|intergenic_region|GENE_exon-XM_012717431.2-1-GENE_exon-XR_190066.3-1|||n.38505314A>G||||||;BaseQRankSum=-2.395e+00;ClippingRankSum=0.00;DP=60;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.250;MQ=54.42;MQRankSum=-4.889e+00;QD=5.92;ReadPosRankSum=3.07;SOR=0.204;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",38629928,".","A","C","0/0","1/1",153.48,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XR_190066.3-1-LOC113786995|GENE_exon-XR_190066.3-1-LOC113786995|intergenic_region|GENE_exon-XR_190066.3-1-LOC113786995|||n.38629928A>C||||||;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=30.00;QD=33.57;SOR=3.258;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",38819134,".","A","G","0/1","1/1",2167.19,"BQB","AC=3;AF=0.750;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101497219|gene-LOC101497219|transcript|XM_004506417.3|protein_coding||c.*4594A>G|||||1440|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004506417.3-1|GENE_exon-XM_004506417.3-1|transcript|rna-XM_004506417.3|protein_coding||c.*1682A>G|||||1440|,G|intergenic_region|MODIFIER|exon-XM_004506417.3-1-LOC101497546|GENE_exon-XM_004506417.3-1-LOC101497546|intergenic_region|GENE_exon-XM_004506417.3-1-LOC101497546|||n.38819134A>G||||||;BaseQRankSum=-5.642e+00;ClippingRankSum=0.00;DP=132;ExcessHet=3.0103;FS=0.765;MLEAC=3;MLEAF=0.750;MQ=44.31;MQRankSum=0.00;QD=16.42;ReadPosRankSum=0.913;SOR=0.698;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",38995374,".","A","G","0/0","0/1",146.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003473360.1-1-LOC113786997|GENE_exon-XR_003473360.1-1-LOC113786997|intergenic_region|GENE_exon-XR_003473360.1-1-LOC113786997|||n.38995374A>G||||||;BaseQRankSum=-2.321e+00;ClippingRankSum=0.00;DP=135;ExcessHet=3.0103;FS=12.031;MLEAC=1;MLEAF=0.250;MQ=56.97;MQRankSum=-8.050e+00;QD=1.98;ReadPosRankSum=1.16;SOR=2.833;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",39160196,".","C","T","0/0","0/1",17.7,"QD2;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004506457.3-1-exon-XM_004506458.1-1|GENE_exon-XM_004506457.3-1-GENE_exon-XM_004506458.1-1|intergenic_region|GENE_exon-XM_004506457.3-1-GENE_exon-XM_004506458.1-1|||n.39160196C>T||||||;BaseQRankSum=1.15;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.250;MQ=45.04;MQRankSum=-2.100e+00;QD=1.97;ReadPosRankSum=-1.050e-01;SOR=0.045;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",39284273,".","T","A","1/1","0/1",379.37,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_001144210.2-1-exon-XM_012717451.2-1|GENE_exon-XR_001144210.2-1-GENE_exon-XM_012717451.2-1|intergenic_region|GENE_exon-XR_001144210.2-1-GENE_exon-XM_012717451.2-1|||n.39284273T>A||||||;BaseQRankSum=2.36;ClippingRankSum=0.00;DP=17;ExcessHet=3.0103;FS=16.564;MLEAC=3;MLEAF=0.750;MQ=35.13;MQRankSum=2.84;QD=22.32;ReadPosRankSum=-2.590e-01;SOR=5.418;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",39790529,".","A","G","0/0","0/1",15.32,"QD2;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004506430.3-1-exon-XM_004506431.3-1|GENE_exon-XM_004506430.3-1-GENE_exon-XM_004506431.3-1|intergenic_region|GENE_exon-XM_004506430.3-1-GENE_exon-XM_004506431.3-1|||n.39790529A>G||||||;BaseQRankSum=-2.536e+00;ClippingRankSum=0.00;DP=55;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.250;MQ=48.80;MQRankSum=-2.636e+00;QD=0.51;ReadPosRankSum=-3.153e+00;SOR=1.068;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",39898214,".","G","A,*","2/2","1/1",818.21,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=2,2;AF=0.500,0.500;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_001144211.2-1-exon-XM_004506432.3-1|GENE_exon-XR_001144211.2-1-GENE_exon-XM_004506432.3-1|intergenic_region|GENE_exon-XR_001144211.2-1-GENE_exon-XM_004506432.3-1|||n.39898214G>A||||||;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2,2;MLEAF=0.500,0.500;MQ=24.49;QD=30.06;SOR=1.493;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",40363121,".","CAATAATAAT","C,CAATAAT","1/2","1/1",1733.16,"mrd30","AC=3,1;AF=0.750,0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004506452.3-1|GENE_exon-XM_004506452.3-1|transcript|rna-XM_004506452.3|protein_coding||c.-3753_-3745delATTATTATT|||||3616|,CAATAAT|upstream_gene_variant|MODIFIER|exon-XM_004506452.3-1|GENE_exon-XM_004506452.3-1|transcript|rna-XM_004506452.3|protein_coding||c.-3753_-3751delATT|||||3622|,C|downstream_gene_variant|MODIFIER|LOC101508791|gene-LOC101508791|transcript|XM_004506452.3|protein_coding||c.*7575_*7583delAATAATAAT|||||3616|WARNING_TRANSCRIPT_NO_START_CODON,CAATAAT|downstream_gene_variant|MODIFIER|LOC101508791|gene-LOC101508791|transcript|XM_004506452.3|protein_coding||c.*7581_*7583delAAT|||||3622|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004506452.3-1-exon-XM_004506453.3-1|GENE_exon-XM_004506452.3-1-GENE_exon-XM_004506453.3-1|intergenic_region|GENE_exon-XM_004506452.3-1-GENE_exon-XM_004506453.3-1|||n.40363122_40363130delAATAATAAT||||||,CAATAAT|intergenic_region|MODIFIER|exon-XM_004506452.3-1-exon-XM_004506453.3-1|GENE_exon-XM_004506452.3-1-GENE_exon-XM_004506453.3-1|intergenic_region|GENE_exon-XM_004506452.3-1-GENE_exon-XM_004506453.3-1|||n.40363128_40363130delAAT||||||;BaseQRankSum=-1.596e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=3,1;MLEAF=0.750,0.250;MQ=42.79;MQRankSum=-5.230e-01;QD=34.66;SOR=0.239;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",40523868,".","AT","A","0/0","0/1",36.24,"QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003473218.1-1-exon-XM_004506470.3-1|GENE_exon-XR_003473218.1-1-GENE_exon-XM_004506470.3-1|intergenic_region|GENE_exon-XR_003473218.1-1-GENE_exon-XM_004506470.3-1|||n.40523869delT||||||;BaseQRankSum=0.901;ClippingRankSum=0.00;DP=35;ExcessHet=3.0103;FS=13.087;MLEAC=1;MLEAF=0.250;MQ=56.52;MQRankSum=-4.273e+00;QD=1.81;ReadPosRankSum=-7.410e-01;SOR=2.786;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",40684342,".","A","T","0/0","0/1",132.87,"mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004506472.3-1-LOC105852376|GENE_exon-XM_004506472.3-1-LOC105852376|intergenic_region|GENE_exon-XM_004506472.3-1-LOC105852376|||n.40684342A>T||||||;BaseQRankSum=-3.280e-01;ClippingRankSum=0.00;DP=18;ExcessHet=3.9794;FS=8.451;MLEAC=2;MLEAF=0.500;MQ=40.88;MQRankSum=-1.465e+00;QD=18.98;ReadPosRankSum=2.19;SOR=3.236;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",40902952,".","C","T","0/1","0/0",18.25,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004506481.3-1-exon-XM_004506483.3-1|GENE_exon-XM_004506481.3-1-GENE_exon-XM_004506483.3-1|intergenic_region|GENE_exon-XM_004506481.3-1-GENE_exon-XM_004506483.3-1|||n.40902952C>T||||||;BaseQRankSum=3.27;ClippingRankSum=0.00;DP=60;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.250;MQ=54.20;MQRankSum=-4.226e+00;QD=0.55;ReadPosRankSum=-1.017e+00;SOR=2.395;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021165.1",41576096,".","C","G","0/0","0/1",90.62,"QD2","AC=1;AF=0.250;AN=4;ANN=G|3_prime_UTR_variant|MODIFIER|exon-XM_004506504.3-1|GENE_exon-XM_004506504.3-1|transcript|rna-XM_004506504.3|protein_coding|3/5|c.*133C>G|||||483|,G|3_prime_UTR_variant|MODIFIER|exon-XM_012717472.2-1|GENE_exon-XM_012717472.2-1|transcript|rna-XM_012717472.2|protein_coding|4/6|c.*133C>G|||||483|,G|downstream_gene_variant|MODIFIER|exon-XM_012717474.2-1|GENE_exon-XM_012717474.2-1|transcript|rna-XM_012717474.2|protein_coding||c.*2934C>G|||||413|,G|downstream_gene_variant|MODIFIER|LOC101509648|gene-LOC101509648|transcript|XM_012717474.2|protein_coding||c.*11337C>G|||||413|WARNING_TRANSCRIPT_NO_START_CODON,G|intron_variant|MODIFIER|exon-XM_012717473.2-1|GENE_exon-XM_012717473.2-1|transcript|rna-XM_012717473.2|protein_coding|3/4|c.*71-131C>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101509648|gene-LOC101509648|transcript|XM_004506504.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101509648|gene-LOC101509648|transcript|XM_012717472.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,G|non_coding_transcript_variant|MODIFIER|LOC101509648|gene-LOC101509648|transcript|XM_012717473.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=3.03;ClippingRankSum=0.00;DP=86;ExcessHet=3.0103;FS=10.792;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=1.81;ReadPosRankSum=0.699;SOR=3.056;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",41678032,".","T","C","0/0","0/1",45.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101491599|gene-LOC101491599|transcript|XM_004506528.3|protein_coding||c.-35338T>C|||||4884|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004506528.3-1|GENE_exon-XM_004506528.3-1|transcript|rna-XM_004506528.3|protein_coding||c.-4884T>C|||||4884|,C|intergenic_region|MODIFIER|exon-XM_004506514.3-1-exon-XM_004506528.3-1|GENE_exon-XM_004506514.3-1-GENE_exon-XM_004506528.3-1|intergenic_region|GENE_exon-XM_004506514.3-1-GENE_exon-XM_004506528.3-1|||n.41678032T>C||||||;BaseQRankSum=-2.943e+00;ClippingRankSum=0.00;DP=125;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.250;MQ=52.73;MQRankSum=-5.769e+00;QD=0.77;ReadPosRankSum=-2.310e-01;SOR=0.473;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",41771027,".","G","C","0/0","1/1",187.44,"map;mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_027336290.1-1-exon-NM_001364774.1-1|GENE_exon-XM_027336290.1-1-GENE_exon-NM_001364774.1-1|intergenic_region|GENE_exon-XM_027336290.1-1-GENE_exon-NM_001364774.1-1|||n.41771027G>C||||||;DP=34;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=43.29;QD=20.83;SOR=2.093;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",42150347,".","G","GT","0/1","0/0",53.15,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=GT|upstream_gene_variant|MODIFIER|LOC101488793|gene-LOC101488793|transcript|XM_027335393.1|protein_coding||c.-9208_-9207insT|||||2138|WARNING_TRANSCRIPT_NO_START_CODON,GT|downstream_gene_variant|MODIFIER|exon-XM_027335393.1-1|GENE_exon-XM_027335393.1-1|transcript|rna-XM_027335393.1|protein_coding||c.*2303_*2304insA|||||2138|,GT|intron_variant|MODIFIER|exon-XM_012717479.2-1|GENE_exon-XM_012717479.2-1|transcript|rna-XM_012717479.2|protein_coding|1/5|c.219-166_219-165insA||||||,GT|non_coding_transcript_variant|MODIFIER|LOC105851131|gene-LOC105851131|transcript|XM_012717479.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-1.410e-01;ClippingRankSum=0.00;DP=40;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=2.66;ReadPosRankSum=0.248;SOR=0.307;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",42238424,".","C","T","0/0","0/1",63.26,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012717480.2-1-exon-XR_003473781.1-1|GENE_exon-XM_012717480.2-1-GENE_exon-XR_003473781.1-1|intergenic_region|GENE_exon-XM_012717480.2-1-GENE_exon-XR_003473781.1-1|||n.42238424C>T||||||;BaseQRankSum=2.30;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=25.92;MQRankSum=2.66;QD=4.87;ReadPosRankSum=-1.480e+00;SOR=1.022;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",42343047,".","C","T","0/1","0/0",177.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XR_003473393.1-1|GENE_exon-XR_003473393.1-1|transcript|rna-XR_003473393.1|pseudogene||n.-325C>T|||||325|,T|upstream_gene_variant|MODIFIER|exon-XR_003473394.1-1|GENE_exon-XR_003473394.1-1|transcript|rna-XR_003473394.1|pseudogene||n.-579C>T|||||579|,T|intergenic_region|MODIFIER|LOC101489657-exon-XR_003473393.1-1|gene-LOC101489657-GENE_exon-XR_003473393.1-1|intergenic_region|gene-LOC101489657-GENE_exon-XR_003473393.1-1|||n.42343047C>T||||||;BaseQRankSum=1.70;ClippingRankSum=0.00;DP=106;ExcessHet=3.0103;FS=16.988;MLEAC=1;MLEAF=0.250;MQ=57.18;MQRankSum=-5.491e+00;QD=2.90;ReadPosRankSum=-3.524e+00;SOR=3.293;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",42397710,".","G","A","0/1","0/0",56.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004506524.3-1|GENE_exon-XM_004506524.3-1|transcript|rna-XM_004506524.3|protein_coding||c.-3022C>T|||||2986|,A|downstream_gene_variant|MODIFIER|LOC101489983|gene-LOC101489983|transcript|XM_004506524.3|protein_coding||c.*3633G>A|||||2986|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004506524.3-1-exon-XR_001144213.2-1|GENE_exon-XM_004506524.3-1-GENE_exon-XR_001144213.2-1|intergenic_region|GENE_exon-XM_004506524.3-1-GENE_exon-XR_001144213.2-1|||n.42397710G>A||||||;BaseQRankSum=3.82;ClippingRankSum=0.00;DP=91;ExcessHet=3.0103;FS=21.717;MLEAC=1;MLEAF=0.250;MQ=55.61;MQRankSum=-6.895e+00;QD=1.15;ReadPosRankSum=-8.830e-01;SOR=4.615;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021165.1",47955486,".","T","C","0/1","0/0",45.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004506720.2-1-exon-XM_004506721.3-1|GENE_exon-XM_004506720.2-1-GENE_exon-XM_004506721.3-1|intergenic_region|GENE_exon-XM_004506720.2-1-GENE_exon-XM_004506721.3-1|||n.47955486T>C||||||;BaseQRankSum=-2.300e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.0103;FS=8.152;MLEAC=1;MLEAF=0.250;MQ=77.54;MQRankSum=-3.526e+00;QD=1.37;ReadPosRankSum=-7.870e-01;SOR=2.916;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",48042247,".","T","TAAGAAG","0/1","1/1",1234.15,"mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=TAAGAAG|upstream_gene_variant|MODIFIER|exon-XM_012717562.2-1|GENE_exon-XM_012717562.2-1|transcript|rna-XM_012717562.2|protein_coding||c.-2006_-2005insCTTCTT|||||1876|,TAAGAAG|downstream_gene_variant|MODIFIER|LOC101491912|gene-LOC101491912|transcript|XM_012717562.2|protein_coding||c.*3628_*3629insAAGAAG|||||1876|WARNING_TRANSCRIPT_NO_START_CODON,TAAGAAG|intergenic_region|MODIFIER|exon-XM_012717562.2-1-exon-XM_004506725.3-1|GENE_exon-XM_012717562.2-1-GENE_exon-XM_004506725.3-1|intergenic_region|GENE_exon-XM_012717562.2-1-GENE_exon-XM_004506725.3-1|||n.48042247_48042248insAAGAAG||||||;BaseQRankSum=-3.900e-01;ClippingRankSum=0.00;DP=51;ExcessHet=3.0103;FS=1.238;MLEAC=3;MLEAF=0.750;MQ=42.84;MQRankSum=1.30;QD=27.43;ReadPosRankSum=-4.900e-02;SOR=0.399;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",48786256,".","G","A","0/1","0/0",84.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_012717575.1-1-exon-XM_004506741.3-1|GENE_exon-XM_012717575.1-1-GENE_exon-XM_004506741.3-1|intergenic_region|GENE_exon-XM_012717575.1-1-GENE_exon-XM_004506741.3-1|||n.48786256G>A||||||;BaseQRankSum=3.18;ClippingRankSum=0.00;DP=63;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.250;MQ=46.63;MQRankSum=-1.297e+00;QD=4.21;ReadPosRankSum=-9.430e-01;SOR=0.078;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",49010747,".","A","T","0/1","0/0",364.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|LOC101507847|LOC101507847|transcript|gene-LOC101507847|pseudogene|3/3|n.1848+3624T>A||||||;BaseQRankSum=-1.710e-01;ClippingRankSum=0.00;DP=110;ExcessHet=3.0103;FS=2.273;MLEAC=1;MLEAF=0.250;MQ=58.38;MQRankSum=-8.850e-01;QD=6.17;ReadPosRankSum=-3.000e-01;SOR=0.405;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",49079894,".","T","TTAATAA","0/1","1/1",997.19,"mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=TTAATAA|upstream_gene_variant|MODIFIER|exon-XM_027335406.1-1|GENE_exon-XM_027335406.1-1|transcript|rna-XM_027335406.1|protein_coding||c.-886_-885insTTATTA|||||142|,TTAATAA|upstream_gene_variant|MODIFIER|exon-XM_004506753.3-1|GENE_exon-XM_004506753.3-1|transcript|rna-XM_004506753.3|protein_coding||c.-886_-885insTTATTA|||||142|,TTAATAA|upstream_gene_variant|MODIFIER|exon-XM_004506752.2-1|GENE_exon-XM_004506752.2-1|transcript|rna-XM_004506752.2|protein_coding||c.-886_-885insTTATTA|||||143|,TTAATAA|downstream_gene_variant|MODIFIER|LOC101501410|gene-LOC101501410|transcript|XM_004506752.2|protein_coding||c.*1596_*1597insTAATAA|||||143|WARNING_TRANSCRIPT_NO_START_CODON,TTAATAA|downstream_gene_variant|MODIFIER|LOC101501410|gene-LOC101501410|transcript|XM_027335406.1|protein_coding||c.*3758_*3759insTAATAA|||||142|WARNING_TRANSCRIPT_NO_START_CODON,TTAATAA|downstream_gene_variant|MODIFIER|LOC101501410|gene-LOC101501410|transcript|XM_004506753.3|protein_coding||c.*1846_*1847insTAATAA|||||142|WARNING_TRANSCRIPT_NO_START_CODON,TTAATAA|intergenic_region|MODIFIER|exon-XM_027335406.1-1-exon-XM_004506755.3-1|GENE_exon-XM_027335406.1-1-GENE_exon-XM_004506755.3-1|intergenic_region|GENE_exon-XM_027335406.1-1-GENE_exon-XM_004506755.3-1|||n.49079894_49079895insTAATAA||||||;BaseQRankSum=1.43;ClippingRankSum=0.00;DP=60;ExcessHet=3.0103;FS=1.510;MLEAC=3;MLEAF=0.750;MQ=44.58;MQRankSum=0.968;QD=29.14;ReadPosRankSum=0.869;SOR=0.883;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",49205376,".","G","GTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA","0/0","1/1",391.49,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=GTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA|upstream_gene_variant|MODIFIER|exon-XM_004506760.3-1|GENE_exon-XM_004506760.3-1|transcript|rna-XM_004506760.3|protein_coding||c.-3250_-3249insTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA|||||3134|,GTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA|downstream_gene_variant|MODIFIER|LOC101504096|gene-LOC101504096|transcript|XM_004506760.3|protein_coding||c.*5390_*5391insTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA|||||3134|WARNING_TRANSCRIPT_NO_START_CODON,GTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA|intergenic_region|MODIFIER|exon-XM_004506760.3-1-exon-XR_001144233.2-1|GENE_exon-XM_004506760.3-1-GENE_exon-XR_001144233.2-1|intergenic_region|GENE_exon-XM_004506760.3-1-GENE_exon-XR_001144233.2-1|||n.49205376_49205377insTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA||||||;DP=46;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.13;QD=29.59;SOR=0.941;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",49572123,".","AT","A","0/1","0/0",585.15,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_012717583.2-1|GENE_exon-XM_012717583.2-1|transcript|rna-XM_012717583.2|protein_coding||c.-999delT|||||873|,A|upstream_gene_variant|MODIFIER|LOC101515365|gene-LOC101515365|transcript|XM_004506790.3|protein_coding||c.-6954delT|||||877|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004506790.3-1|GENE_exon-XM_004506790.3-1|transcript|rna-XM_004506790.3|protein_coding||c.-999delT|||||877|,A|upstream_gene_variant|MODIFIER|exon-XM_012717581.2-1|GENE_exon-XM_012717581.2-1|transcript|rna-XM_012717581.2|protein_coding||c.-1467delT|||||878|,A|upstream_gene_variant|MODIFIER|exon-XM_012717582.2-1|GENE_exon-XM_012717582.2-1|transcript|rna-XM_012717582.2|protein_coding||c.-1467delT|||||878|,A|upstream_gene_variant|MODIFIER|LOC101515365|gene-LOC101515365|transcript|XM_012717583.2|protein_coding||c.-10831delT|||||873|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101515365|gene-LOC101515365|transcript|XM_012717581.2|protein_coding||c.-6954delT|||||878|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101515365|gene-LOC101515365|transcript|XM_012717582.2|protein_coding||c.-6954delT|||||878|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004506788.3-1-exon-XM_012717583.2-1|GENE_exon-XM_004506788.3-1-GENE_exon-XM_012717583.2-1|intergenic_region|GENE_exon-XM_004506788.3-1-GENE_exon-XM_012717583.2-1|||n.49572124delT||||||;BaseQRankSum=-4.440e-01;ClippingRankSum=0.00;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=59.98;MQRankSum=0.00;QD=11.94;ReadPosRankSum=1.11;SOR=0.614;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",49807150,".","G","A","0/0","0/1",74.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004506873.3-1-exon-XM_027335227.1-1|GENE_exon-XM_004506873.3-1-GENE_exon-XM_027335227.1-1|intergenic_region|GENE_exon-XM_004506873.3-1-GENE_exon-XM_027335227.1-1|||n.49807150G>A||||||;BaseQRankSum=1.81;ClippingRankSum=0.00;DP=124;ExcessHet=3.0103;FS=4.745;MLEAC=1;MLEAF=0.250;MQ=55.62;MQRankSum=-6.886e+00;QD=1.22;ReadPosRankSum=-2.146e+00;SOR=1.394;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021165.1",50000129,".","AAAAGTGAGTAAGG","A","0/1","1/1",2114.15,"MQ40","AC=3;AF=0.750;AN=4;ANN=A|intron_variant|MODIFIER|exon-XR_003473444.1-1|GENE_exon-XR_003473444.1-1|transcript|rna-XR_003473444.1|pseudogene|1/2|n.572-3221_572-3209delAAAGTGAGTAAGG||||||,A|intragenic_variant|MODIFIER|LOC113787146|gene-LOC113787146|gene_variant|gene-LOC113787146|||n.50000130_50000142delAAAGTGAGTAAGG||||||;BaseQRankSum=0.766;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=3.311;MLEAC=3;MLEAF=0.750;MQ=36.57;MQRankSum=-5.407e+00;QD=25.47;ReadPosRankSum=0.544;SOR=0.349;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",50452008,".","T","C","0/1","0/0",242.19,"BQB;map","AC=1;AF=0.250;AN=4;ANN=C|missense_variant|MODERATE|exon-XM_012717598.1-1|GENE_exon-XM_012717598.1-1|transcript|rna-XM_012717598.1|protein_coding|1/2|c.235T>C|p.Ser79Pro|235/1860|235/1860|79/619||,C|non_coding_transcript_variant|MODIFIER|LOC101490320|gene-LOC101490320|transcript|XM_012717598.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-6.505e+00;ClippingRankSum=0.00;DP=199;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.250;MQ=50.24;MQRankSum=-2.010e+00;QD=2.20;ReadPosRankSum=0.776;SOR=0.383;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",50752806,".","A","G","0/0","0/1",288.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_012717616.2-1-exon-XM_004506857.3-1|GENE_exon-XM_012717616.2-1-GENE_exon-XM_004506857.3-1|intergenic_region|GENE_exon-XM_012717616.2-1-GENE_exon-XM_004506857.3-1|||n.50752806A>G||||||;BaseQRankSum=-3.274e+00;ClippingRankSum=0.00;DP=111;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.250;MQ=58.66;MQRankSum=-3.004e+00;QD=4.12;ReadPosRankSum=1.20;SOR=0.753;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",50894056,".","A","AT","0/1","1/1",1508.15,"PASS","AC=3;AF=0.750;AN=4;ANN=AT|intergenic_region|MODIFIER|exon-XM_004506882.3-1-exon-XM_004506885.2-1|GENE_exon-XM_004506882.3-1-GENE_exon-XM_004506885.2-1|intergenic_region|GENE_exon-XM_004506882.3-1-GENE_exon-XM_004506885.2-1|||n.50894056_50894057insT||||||;BaseQRankSum=1.98;ClippingRankSum=0.00;DP=89;ExcessHet=3.0103;FS=18.312;MLEAC=3;MLEAF=0.750;MQ=43.59;MQRankSum=2.01;QD=18.17;ReadPosRankSum=1.73;SOR=0.956;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",51221216,".","G","T","0/1","0/0",23.43,"QD2;map","AC=1;AF=0.250;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_027335340.1-1|GENE_exon-XM_027335340.1-1|transcript|rna-XM_027335340.1|protein_coding|1/2|c.311G>T|p.Ser104Ile|777/2557|311/2091|104/696||,T|non_coding_transcript_variant|MODIFIER|LOC105852420|gene-LOC105852420|transcript|XM_027335340.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=3.41;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=56.33;MQRankSum=1.25;QD=0.47;ReadPosRankSum=0.077;SOR=0.559;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",51503471,".","A","G","0/1","0/0",15.17,"BQB;QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_012717628.2-1|GENE_exon-XM_012717628.2-1|transcript|rna-XM_012717628.2|protein_coding|4/19|c.343+1844T>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101506124|gene-LOC101506124|transcript|XM_012717628.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-4.286e+00;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=8.263;MLEAC=1;MLEAF=0.250;MQ=53.94;MQRankSum=-5.491e+00;QD=0.47;ReadPosRankSum=2.23;SOR=3.142;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",51554350,".","T","G","0/0","0/1",399.19,"MQ40","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003473377.1-1-exon-XR_003473678.1-1|GENE_exon-XR_003473377.1-1-GENE_exon-XR_003473678.1-1|intergenic_region|GENE_exon-XR_003473377.1-1-GENE_exon-XR_003473678.1-1|||n.51554350T>G||||||;BaseQRankSum=-3.653e+00;ClippingRankSum=0.00;DP=88;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.250;MQ=39.94;MQRankSum=-3.238e+00;QD=11.09;ReadPosRankSum=-2.469e+00;SOR=1.296;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",51675262,".","G","A","0/1","0/0",156.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027335341.1-1-LOC101508067|GENE_exon-XM_027335341.1-1-LOC101508067|intergenic_region|GENE_exon-XM_027335341.1-1-LOC101508067|||n.51675262G>A||||||;BaseQRankSum=2.30;ClippingRankSum=0.00;DP=67;ExcessHet=3.0103;FS=10.395;MLEAC=1;MLEAF=0.250;MQ=54.50;MQRankSum=-4.850e-01;QD=5.58;ReadPosRankSum=-2.240e-01;SOR=0.039;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",51906957,".","T","C","0/0","0/1",34.2,"QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|LOC113787017-LOC101510625|LOC113787017-LOC101510625|intergenic_region|LOC113787017-LOC101510625|||n.51906957T>C||||||;BaseQRankSum=-2.919e+00;ClippingRankSum=0.00;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=45.54;MQRankSum=-3.768e+00;QD=1.49;ReadPosRankSum=1.40;SOR=0.425;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",52047950,".","T","C","0/1","0/0",195.19,"BQB;map;mrd30","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004506939.3-1|GENE_exon-XM_004506939.3-1|transcript|rna-XM_004506939.3|protein_coding||c.-529A>G|||||8|,C|upstream_gene_variant|MODIFIER|LOC113787139|gene-LOC113787139|transcript|XM_027335702.1|protein_coding||c.-777T>C|||||216|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_027335702.1-1|GENE_exon-XM_027335702.1-1|transcript|rna-XM_027335702.1|protein_coding||c.-336T>C|||||216|,C|downstream_gene_variant|MODIFIER|LOC101514502|gene-LOC101514502|transcript|XM_004506939.3|protein_coding||c.*2319T>C|||||8|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004506939.3-1-exon-XM_027335702.1-1|GENE_exon-XM_004506939.3-1-GENE_exon-XM_027335702.1-1|intergenic_region|GENE_exon-XM_004506939.3-1-GENE_exon-XM_027335702.1-1|||n.52047950T>C||||||;BaseQRankSum=-4.061e+00;ClippingRankSum=0.00;DP=52;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=6.10;ReadPosRankSum=-2.790e-01;SOR=0.741;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",52185084,".","G","GT","0/1","1/1",1474.15,"PASS","AC=3;AF=0.750;AN=4;ANN=GT|upstream_gene_variant|MODIFIER|exon-XM_012717654.2-1|GENE_exon-XM_012717654.2-1|transcript|rna-XM_012717654.2|protein_coding||c.-12814_-12813insA|||||956|,GT|upstream_gene_variant|MODIFIER|LOC101492681|gene-LOC101492681|transcript|XM_004506956.3|protein_coding||c.-7577_-7576insT|||||4671|WARNING_TRANSCRIPT_NO_START_CODON,GT|upstream_gene_variant|MODIFIER|exon-XM_004506956.3-1|GENE_exon-XM_004506956.3-1|transcript|rna-XM_004506956.3|protein_coding||c.-5036_-5035insT|||||4671|,GT|downstream_gene_variant|MODIFIER|LOC101492347|gene-LOC101492347|transcript|XM_012717654.2|protein_coding||c.*28695_*28696insT|||||956|WARNING_TRANSCRIPT_NO_START_CODON,GT|intergenic_region|MODIFIER|exon-XM_012717654.2-1-exon-XM_004506956.3-1|GENE_exon-XM_012717654.2-1-GENE_exon-XM_004506956.3-1|intergenic_region|GENE_exon-XM_012717654.2-1-GENE_exon-XM_004506956.3-1|||n.52185084_52185085insT||||||;BaseQRankSum=0.396;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=6.373;MLEAC=3;MLEAF=0.750;MQ=43.16;MQRankSum=0.088;QD=16.20;ReadPosRankSum=-6.420e-01;SOR=0.272;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021165.1",55792671,".","T","C","0/0","0/1",143.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_027335350.1-1|GENE_exon-XM_027335350.1-1|transcript|rna-XM_027335350.1|protein_coding||c.-4044A>G|||||4044|,C|downstream_gene_variant|MODIFIER|LOC113787020|gene-LOC113787020|transcript|XM_027335350.1|protein_coding||c.*20855T>C|||||4044|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_027335350.1-1-exon-XR_003473396.1-1|GENE_exon-XM_027335350.1-1-GENE_exon-XR_003473396.1-1|intergenic_region|GENE_exon-XM_027335350.1-1-GENE_exon-XR_003473396.1-1|||n.55792671T>C||||||;BaseQRankSum=-3.533e+00;ClippingRankSum=0.00;DP=64;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.250;MQ=58.48;MQRankSum=0.780;QD=4.77;ReadPosRankSum=2.24;SOR=0.127;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",56173972,".","C","T","0/0","0/1",479.87,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004507175.3-1-exon-XR_003473371.1-1|GENE_exon-XM_004507175.3-1-GENE_exon-XR_003473371.1-1|intergenic_region|GENE_exon-XM_004507175.3-1-GENE_exon-XR_003473371.1-1|||n.56173972C>T||||||;BaseQRankSum=1.98;ClippingRankSum=0.00;DP=326;ExcessHet=3.9794;FS=2.369;MLEAC=2;MLEAF=0.500;MQ=57.88;MQRankSum=-8.255e+00;QD=6.86;ReadPosRankSum=3.14;SOR=1.049;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",56304146,".","T","C","0/1","0/0",86.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XR_003473371.1-1|GENE_exon-XR_003473371.1-1|transcript|rna-XR_003473371.1|pseudogene|2/3|n.718+15A>G||||||,C|intron_variant|MODIFIER|exon-XR_001144275.2-1|GENE_exon-XR_001144275.2-1|transcript|rna-XR_001144275.2|pseudogene|3/4|n.638+15A>G||||||,C|intragenic_variant|MODIFIER|LOC105852438|gene-LOC105852438|gene_variant|gene-LOC105852438|||n.56304146T>C||||||;BaseQRankSum=-4.619e+00;ClippingRankSum=0.00;DP=102;ExcessHet=3.0103;FS=22.870;MLEAC=1;MLEAF=0.250;MQ=56.61;MQRankSum=-7.260e+00;QD=1.60;ReadPosRankSum=-1.072e+00;SOR=4.403;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",56401635,".","C","T","0/0","0/1",227.28,"MQ40;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|LOC101494099|LOC101494099|transcript|gene-LOC101494099|pseudogene|10/12|n.1068-11694G>A||||||;BaseQRankSum=2.96;ClippingRankSum=0.00;DP=51;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.250;MQ=39.08;MQRankSum=-2.811e+00;QD=8.12;ReadPosRankSum=0.809;SOR=2.517;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",56808970,".","C","T","1/1","0/1",1420.19,"BQB","AC=3;AF=0.750;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004507213.3-1|GENE_exon-XM_004507213.3-1|transcript|rna-XM_004507213.3|protein_coding||c.-2807G>A|||||2675|,T|upstream_gene_variant|MODIFIER|LOC101503435|gene-LOC101503435|transcript|XM_004507215.3|protein_coding||c.-9158C>T|||||4073|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101503435|gene-LOC101503435|transcript|XM_004507217.3|protein_coding||c.-8409C>T|||||3959|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101503435|gene-LOC101503435|transcript|XM_004507216.3|protein_coding||c.-8231C>T|||||4073|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101503110|gene-LOC101503110|transcript|XM_004507213.3|protein_coding||c.*7084C>T|||||2675|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|TRNAT-UGU|gene-TRNAT-UGU-5|transcript|rna-TRNAT-UGU-5|protein_coding||c.*577G>A|||||577|WARNING_TRANSCRIPT_MULTIPLE_STOP_CODONS,T|downstream_gene_variant|MODIFIER|exon-XM_004507217.3-1|GENE_exon-XM_004507217.3-1|transcript|rna-XM_004507217.3|protein_coding||c.*4584G>A|||||3959|,T|downstream_gene_variant|MODIFIER|exon-XM_004507216.3-1|GENE_exon-XM_004507216.3-1|transcript|rna-XM_004507216.3|protein_coding||c.*4584G>A|||||4073|,T|downstream_gene_variant|MODIFIER|exon-XM_004507215.3-1|GENE_exon-XM_004507215.3-1|transcript|rna-XM_004507215.3|protein_coding||c.*4584G>A|||||4073|,T|intergenic_region|MODIFIER|exon-XM_004507213.3-1-TRNAT-UGU|GENE_exon-XM_004507213.3-1-gene-TRNAT-UGU-5|intergenic_region|GENE_exon-XM_004507213.3-1-gene-TRNAT-UGU-5|||n.56808970C>T||||||;BaseQRankSum=4.57;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=0.892;MLEAC=3;MLEAF=0.750;MQ=44.72;MQRankSum=0.00;QD=15.96;ReadPosRankSum=0.024;SOR=0.549;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",57132101,".","G","A","0/1","0/0",294.87,"BQB","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101511583|LOC101511583|transcript|gene-LOC101511583|pseudogene||n.*4823G>A|||||4823|,A|intron_variant|MODIFIER|exon-XM_004507241.3-1|GENE_exon-XM_004507241.3-1|transcript|rna-XM_004507241.3|protein_coding|1/5|c.76+845C>T||||||,A|intron_variant|MODIFIER|exon-XM_012717733.2-1|GENE_exon-XM_012717733.2-1|transcript|rna-XM_012717733.2|protein_coding|1/5|c.283+845C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101511912|gene-LOC101511912|transcript|XM_004507241.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101511912|gene-LOC101511912|transcript|XM_012717733.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.57;ClippingRankSum=0.00;DP=157;ExcessHet=3.9794;FS=6.507;MLEAC=2;MLEAF=0.500;MQ=58.19;MQRankSum=-7.542e+00;QD=3.73;ReadPosRankSum=1.72;SOR=0.472;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57260763,".","G","A","1/1","0/0",1258.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004507259.3-1|GENE_exon-XM_004507259.3-1|transcript|rna-XM_004507259.3|protein_coding|6/12|c.530+29C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101491699|gene-LOC101491699|transcript|XM_004507259.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=94;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=23.74;SOR=0.808;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",57737606,".","TTTATTATTATTATTATTATTA","T,TTTATTA","2/2","1/1",2679.16,"PASS","AC=2,2;AF=0.500,0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004507316.3-1|GENE_exon-XM_004507316.3-1|transcript|rna-XM_004507316.3|protein_coding||c.-230_-210delTAATAATAATAATAATAATAA|||||69|,TTTATTA|upstream_gene_variant|MODIFIER|exon-XM_004507316.3-1|GENE_exon-XM_004507316.3-1|transcript|rna-XM_004507316.3|protein_coding||c.-230_-216delTAATAATAATAATAA|||||75|,T|downstream_gene_variant|MODIFIER|LOC101508902|gene-LOC101508902|transcript|XM_004507316.3|protein_coding||c.*1754_*1774delTTATTATTATTATTATTATTA|||||69|WARNING_TRANSCRIPT_NO_START_CODON,TTTATTA|downstream_gene_variant|MODIFIER|LOC101508902|gene-LOC101508902|transcript|XM_004507316.3|protein_coding||c.*1760_*1774delTTATTATTATTATTA|||||75|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004507316.3-1-exon-XM_012717759.2-1|GENE_exon-XM_004507316.3-1-GENE_exon-XM_012717759.2-1|intergenic_region|GENE_exon-XM_004507316.3-1-GENE_exon-XM_012717759.2-1|||n.57737607_57737627delTTATTATTATTATTATTATTA||||||,TTTATTA|intergenic_region|MODIFIER|exon-XM_004507316.3-1-exon-XM_012717759.2-1|GENE_exon-XM_004507316.3-1-GENE_exon-XM_012717759.2-1|intergenic_region|GENE_exon-XM_004507316.3-1-GENE_exon-XM_012717759.2-1|||n.57737613_57737627delTTATTATTATTATTA||||||;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2,2;MLEAF=0.500,0.500;MQ=43.74;QD=31.13;SOR=0.854;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",57883394,".","T","G","0/0","1/1",1285.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_027335363.1-1|GENE_exon-XM_027335363.1-1|transcript|rna-XM_027335363.1|protein_coding||c.-4223A>C|||||4223|,G|downstream_gene_variant|MODIFIER|LOC101500466|gene-LOC101500466|transcript|XM_027335363.1|protein_coding||c.*5140T>G|||||4223|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101513960|gene-LOC101513960|transcript|XM_004507332.3|protein_coding||c.*1608T>G|||||337|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004507332.3-1|GENE_exon-XM_004507332.3-1|transcript|rna-XM_004507332.3|protein_coding||c.*448T>G|||||337|,G|intergenic_region|MODIFIER|exon-XM_004507332.3-1-exon-XM_012717755.2-1|GENE_exon-XM_004507332.3-1-GENE_exon-XM_012717755.2-1|intergenic_region|GENE_exon-XM_004507332.3-1-GENE_exon-XM_012717755.2-1|||n.57883394T>G||||||;DP=92;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.25;SOR=1.077;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",57943379,".","T","A","1/1","0/0",2611.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|5_prime_UTR_variant|MODIFIER|exon-XM_004507345.3-1|GENE_exon-XM_004507345.3-1|transcript|rna-XM_004507345.3|protein_coding|1/2|c.-1462A>T|||||1462|,A|upstream_gene_variant|MODIFIER|LOC113787026|LOC113787026|transcript|gene-LOC113787026|pseudogene||n.-2655T>A|||||2655|,A|upstream_gene_variant|MODIFIER|LOC101490744|gene-LOC101490744|transcript|XM_004507347.2|protein_coding||c.-8205T>A|||||4377|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101489866|gene-LOC101489866|transcript|XM_004507344.3|protein_coding||c.*7336T>A|||||3808|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004507344.3-1|GENE_exon-XM_004507344.3-1|transcript|rna-XM_004507344.3|protein_coding||c.*4072T>A|||||3808|,A|downstream_gene_variant|MODIFIER|exon-XM_004507347.2-1|GENE_exon-XM_004507347.2-1|transcript|rna-XM_004507347.2|protein_coding||c.*4821A>T|||||4377|,A|intron_variant|MODIFIER|exon-XM_004507346.3-1|GENE_exon-XM_004507346.3-1|transcript|rna-XM_004507346.3|protein_coding|1/2|c.-55-1407A>T||||||,A|intron_variant|MODIFIER|exon-XM_027335851.1-1|GENE_exon-XM_027335851.1-1|transcript|rna-XM_027335851.1|protein_coding|1/2|c.-69-1393A>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101490202|gene-LOC101490202|transcript|XM_004507345.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101490202|gene-LOC101490202|transcript|XM_004507346.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101490202|gene-LOC101490202|transcript|XM_027335851.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.60;QD=35.31;SOR=1.123;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57952762,".","G","A","1/1","0/0",1591.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004507347.2-1|GENE_exon-XM_004507347.2-1|transcript|rna-XM_004507347.2|protein_coding||c.-1260C>T|||||1178|,A|downstream_gene_variant|MODIFIER|LOC101490744|gene-LOC101490744|transcript|XM_004507347.2|protein_coding||c.*5006G>A|||||1178|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004507347.2-1-exon-XM_004507348.3-1|GENE_exon-XM_004507347.2-1-GENE_exon-XM_004507348.3-1|intergenic_region|GENE_exon-XM_004507347.2-1-GENE_exon-XM_004507348.3-1|||n.57952762G>A||||||;DP=102;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.97;QD=24.87;SOR=1.044;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",57955360,".","A","G","1/1","0/0",3213.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004507347.2-1|GENE_exon-XM_004507347.2-1|transcript|rna-XM_004507347.2|protein_coding||c.-3858T>C|||||3776|,G|upstream_gene_variant|MODIFIER|LOC101491071|gene-LOC101491071|transcript|XM_004507348.3|protein_coding||c.-14588A>G|||||3367|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101490744|gene-LOC101490744|transcript|XM_004507347.2|protein_coding||c.*7604A>G|||||3776|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004507348.3-1|GENE_exon-XM_004507348.3-1|transcript|rna-XM_004507348.3|protein_coding||c.*3750T>C|||||3367|,G|intergenic_region|MODIFIER|exon-XM_004507347.2-1-exon-XM_004507348.3-1|GENE_exon-XM_004507347.2-1-GENE_exon-XM_004507348.3-1|intergenic_region|GENE_exon-XM_004507347.2-1-GENE_exon-XM_004507348.3-1|||n.57955360A>G||||||;DP=113;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=31.22;SOR=1.002;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57963137,".","A","G","1/1","0/0",672.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|splice_region_variant&intron_variant|LOW|exon-XM_004507348.3-1|GENE_exon-XM_004507348.3-1|transcript|rna-XM_004507348.3|protein_coding|16/21|c.1706-5T>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101491071|gene-LOC101491071|transcript|XM_004507348.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=73;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.53;QD=19.78;SOR=2.303;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",57970145,".","TGTTAAAAAAATAG","T","1/1","0/0",1420.38,"MQ40","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004507348.3-1|GENE_exon-XM_004507348.3-1|transcript|rna-XM_004507348.3|protein_coding||c.-332_-320delCTATTTTTTTAAC|||||198|,T|upstream_gene_variant|MODIFIER|exon-XM_027335514.1-1|GENE_exon-XM_027335514.1-1|transcript|rna-XM_027335514.1|protein_coding||c.-6037_-6025delGTTAAAAAAATAG|||||4243|,T|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_004507349.3|protein_coding||c.-8310_-8298delGTTAAAAAAATAG|||||4245|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004507349.3-1|GENE_exon-XM_004507349.3-1|transcript|rna-XM_004507349.3|protein_coding||c.-6037_-6025delGTTAAAAAAATAG|||||4245|,T|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335514.1|protein_coding||c.-8310_-8298delGTTAAAAAAATAG|||||4243|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491071|gene-LOC101491071|transcript|XM_004507348.3|protein_coding||c.*11419_*11431delGTTAAAAAAATAG|||||198|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004507348.3-1-exon-XM_027335514.1-1|GENE_exon-XM_004507348.3-1-GENE_exon-XM_027335514.1-1|intergenic_region|GENE_exon-XM_004507348.3-1-GENE_exon-XM_027335514.1-1|||n.57970146_57970158delGTTAAAAAAATAG||||||;DP=68;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=37.20;QD=30.51;SOR=1.112;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57972831,".","G","T","1/1","0/0",1360.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004507348.3-1|GENE_exon-XM_004507348.3-1|transcript|rna-XM_004507348.3|protein_coding||c.-3005C>A|||||2883|,T|upstream_gene_variant|MODIFIER|exon-XM_027335514.1-1|GENE_exon-XM_027335514.1-1|transcript|rna-XM_027335514.1|protein_coding||c.-3352G>T|||||1558|,T|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_004507349.3|protein_coding||c.-5625G>T|||||1560|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004507349.3-1|GENE_exon-XM_004507349.3-1|transcript|rna-XM_004507349.3|protein_coding||c.-3352G>T|||||1560|,T|upstream_gene_variant|MODIFIER|exon-XM_027335515.1-1|GENE_exon-XM_027335515.1-1|transcript|rna-XM_027335515.1|protein_coding||c.-3352G>T|||||2483|,T|upstream_gene_variant|MODIFIER|exon-XM_027335516.1-1|GENE_exon-XM_027335516.1-1|transcript|rna-XM_027335516.1|protein_coding||c.-3352G>T|||||2857|,T|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335514.1|protein_coding||c.-5625G>T|||||1558|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335515.1|protein_coding||c.-5625G>T|||||2483|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335516.1|protein_coding||c.-5625G>T|||||2857|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491071|gene-LOC101491071|transcript|XM_004507348.3|protein_coding||c.*14104G>T|||||2883|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004507348.3-1-exon-XM_027335514.1-1|GENE_exon-XM_004507348.3-1-GENE_exon-XM_027335514.1-1|intergenic_region|GENE_exon-XM_004507348.3-1-GENE_exon-XM_027335514.1-1|||n.57972831G>T||||||;DP=99;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=42.20;QD=24.73;SOR=1.159;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",57973648,".","T","C","1/1","0/0",1225.42,"mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004507348.3-1|GENE_exon-XM_004507348.3-1|transcript|rna-XM_004507348.3|protein_coding||c.-3822A>G|||||3700|,C|upstream_gene_variant|MODIFIER|exon-XM_027335514.1-1|GENE_exon-XM_027335514.1-1|transcript|rna-XM_027335514.1|protein_coding||c.-2535T>C|||||741|,C|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_004507349.3|protein_coding||c.-4808T>C|||||743|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004507349.3-1|GENE_exon-XM_004507349.3-1|transcript|rna-XM_004507349.3|protein_coding||c.-2535T>C|||||743|,C|upstream_gene_variant|MODIFIER|exon-XM_027335515.1-1|GENE_exon-XM_027335515.1-1|transcript|rna-XM_027335515.1|protein_coding||c.-2535T>C|||||1666|,C|upstream_gene_variant|MODIFIER|exon-XM_027335516.1-1|GENE_exon-XM_027335516.1-1|transcript|rna-XM_027335516.1|protein_coding||c.-2535T>C|||||2040|,C|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335514.1|protein_coding||c.-4808T>C|||||741|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335515.1|protein_coding||c.-4808T>C|||||1666|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335516.1|protein_coding||c.-4808T>C|||||2040|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101491071|gene-LOC101491071|transcript|XM_004507348.3|protein_coding||c.*14921T>C|||||3700|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004507348.3-1-exon-XM_027335514.1-1|GENE_exon-XM_004507348.3-1-GENE_exon-XM_027335514.1-1|intergenic_region|GENE_exon-XM_004507348.3-1-GENE_exon-XM_027335514.1-1|||n.57973648T>C||||||;DP=74;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.00;QD=24.67;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57974997,".","G","GTT","1/1","0/0",1260.38,"MQ40","AC=2;AF=0.500;AN=4;ANN=GTT|upstream_gene_variant|MODIFIER|exon-XM_027335515.1-1|GENE_exon-XM_027335515.1-1|transcript|rna-XM_027335515.1|protein_coding||c.-1186_-1185insTT|||||316|,GTT|upstream_gene_variant|MODIFIER|exon-XM_027335516.1-1|GENE_exon-XM_027335516.1-1|transcript|rna-XM_027335516.1|protein_coding||c.-1186_-1185insTT|||||690|,GTT|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335515.1|protein_coding||c.-3459_-3458insTT|||||316|WARNING_TRANSCRIPT_NO_START_CODON,GTT|upstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335516.1|protein_coding||c.-3459_-3458insTT|||||690|WARNING_TRANSCRIPT_NO_START_CODON,GTT|intron_variant|MODIFIER|exon-XM_027335514.1-1|GENE_exon-XM_027335514.1-1|transcript|rna-XM_027335514.1|protein_coding|1/3|c.-298+333_-298+334insTT||||||,GTT|intron_variant|MODIFIER|exon-XM_004507349.3-1|GENE_exon-XM_004507349.3-1|transcript|rna-XM_004507349.3|protein_coding|1/3|c.-280+333_-280+334insTT||||||,GTT|non_coding_transcript_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_004507349.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,GTT|non_coding_transcript_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335514.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=39.24;QD=31.50;SOR=1.061;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",57977207,".","C","T","1/1","0/0",1665.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_027335514.1-1|GENE_exon-XM_027335514.1-1|transcript|rna-XM_027335514.1|protein_coding|3/3|c.703+15C>T||||||,T|intron_variant|MODIFIER|exon-XM_004507349.3-1|GENE_exon-XM_004507349.3-1|transcript|rna-XM_004507349.3|protein_coding|3/3|c.703+15C>T||||||,T|intron_variant|MODIFIER|exon-XM_027335515.1-1|GENE_exon-XM_027335515.1-1|transcript|rna-XM_027335515.1|protein_coding|3/3|c.703+15C>T||||||,T|intron_variant|MODIFIER|exon-XM_027335516.1-1|GENE_exon-XM_027335516.1-1|transcript|rna-XM_027335516.1|protein_coding|3/3|c.703+15C>T||||||,T|non_coding_transcript_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_004507349.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335514.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335515.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335516.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=114;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=56.28;QD=24.14;SOR=0.910;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",57981156,".","TA","T","1/1","0/0",2168.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101492122|gene-LOC101492122|transcript|XM_004507352.3|protein_coding||c.-7146delA|||||4932|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_027335514.1-1|GENE_exon-XM_027335514.1-1|transcript|rna-XM_027335514.1|protein_coding||c.*2929delA|||||2701|,T|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_004507349.3|protein_coding||c.*6766delA|||||2701|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004507349.3-1|GENE_exon-XM_004507349.3-1|transcript|rna-XM_004507349.3|protein_coding||c.*2929delA|||||2701|,T|downstream_gene_variant|MODIFIER|exon-XM_027335515.1-1|GENE_exon-XM_027335515.1-1|transcript|rna-XM_027335515.1|protein_coding||c.*2929delA|||||2701|,T|downstream_gene_variant|MODIFIER|exon-XM_027335516.1-1|GENE_exon-XM_027335516.1-1|transcript|rna-XM_027335516.1|protein_coding||c.*2929delA|||||2701|,T|downstream_gene_variant|MODIFIER|exon-XM_004507352.3-1|GENE_exon-XM_004507352.3-1|transcript|rna-XM_004507352.3|protein_coding||c.*5321delT|||||4932|,T|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335514.1|protein_coding||c.*6768delA|||||2701|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335515.1|protein_coding||c.*5843delA|||||2701|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335516.1|protein_coding||c.*5469delA|||||2701|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027335514.1-1-exon-XM_004507352.3-1|GENE_exon-XM_027335514.1-1-GENE_exon-XM_004507352.3-1|intergenic_region|GENE_exon-XM_027335514.1-1-GENE_exon-XM_004507352.3-1|||n.57981157delA||||||;DP=82;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=47.44;QD=28.76;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57982599,".","A","C","1/1","0/0",1223.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101492122|gene-LOC101492122|transcript|XM_004507352.3|protein_coding||c.-5704A>C|||||3490|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_027335514.1-1|GENE_exon-XM_027335514.1-1|transcript|rna-XM_027335514.1|protein_coding||c.*4371A>C|||||4143|,C|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_004507349.3|protein_coding||c.*8208A>C|||||4143|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004507349.3-1|GENE_exon-XM_004507349.3-1|transcript|rna-XM_004507349.3|protein_coding||c.*4371A>C|||||4143|,C|downstream_gene_variant|MODIFIER|exon-XM_027335515.1-1|GENE_exon-XM_027335515.1-1|transcript|rna-XM_027335515.1|protein_coding||c.*4371A>C|||||4143|,C|downstream_gene_variant|MODIFIER|exon-XM_027335516.1-1|GENE_exon-XM_027335516.1-1|transcript|rna-XM_027335516.1|protein_coding||c.*4371A>C|||||4143|,C|downstream_gene_variant|MODIFIER|exon-XM_004507352.3-1|GENE_exon-XM_004507352.3-1|transcript|rna-XM_004507352.3|protein_coding||c.*3879T>G|||||3490|,C|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335514.1|protein_coding||c.*8210A>C|||||4143|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335515.1|protein_coding||c.*7285A>C|||||4143|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101491386|gene-LOC101491386|transcript|XM_027335516.1|protein_coding||c.*6911A>C|||||4143|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_027335514.1-1-exon-XM_004507352.3-1|GENE_exon-XM_027335514.1-1-GENE_exon-XM_004507352.3-1|intergenic_region|GENE_exon-XM_027335514.1-1-GENE_exon-XM_004507352.3-1|||n.57982599A>C||||||;DP=87;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.68;QD=23.08;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",57983945,".","G","A","1/1","0/0",1223.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101492122|gene-LOC101492122|transcript|XM_004507352.3|protein_coding||c.-4358G>A|||||2144|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004507352.3-1|GENE_exon-XM_004507352.3-1|transcript|rna-XM_004507352.3|protein_coding||c.*2533C>T|||||2144|,A|intergenic_region|MODIFIER|exon-XM_027335514.1-1-exon-XM_004507352.3-1|GENE_exon-XM_027335514.1-1-GENE_exon-XM_004507352.3-1|intergenic_region|GENE_exon-XM_027335514.1-1-GENE_exon-XM_004507352.3-1|||n.57983945G>A||||||;DP=68;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=51.49;QD=30.64;SOR=1.214;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57989373,".","A","C","1/1","0/0",2125.42,"PASS","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004507352.3-1|GENE_exon-XM_004507352.3-1|transcript|rna-XM_004507352.3|protein_coding||c.-1762T>G|||||1070|,C|upstream_gene_variant|MODIFIER|LOC101492463|gene-LOC101492463|transcript|XM_004507353.3|protein_coding||c.-2894A>C|||||2231|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101492122|gene-LOC101492122|transcript|XM_004507352.3|protein_coding||c.*3284A>C|||||1070|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004507353.3-1|GENE_exon-XM_004507353.3-1|transcript|rna-XM_004507353.3|protein_coding||c.*2500T>G|||||2231|,C|intergenic_region|MODIFIER|exon-XM_004507352.3-1-exon-XM_004507353.3-1|GENE_exon-XM_004507352.3-1-GENE_exon-XM_004507353.3-1|intergenic_region|GENE_exon-XM_004507352.3-1-GENE_exon-XM_004507353.3-1|||n.57989373A>C||||||;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=46.66;QD=30.23;SOR=0.919;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57990795,".","A","T","1/1","0/0",989.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004507352.3-1|GENE_exon-XM_004507352.3-1|transcript|rna-XM_004507352.3|protein_coding||c.-3184T>A|||||2492|,T|upstream_gene_variant|MODIFIER|LOC101492463|gene-LOC101492463|transcript|XM_004507353.3|protein_coding||c.-1472A>T|||||809|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101493126|gene-LOC101493126|transcript|XM_004507355.3|protein_coding||c.-9249A>T|||||3922|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101492122|gene-LOC101492122|transcript|XM_004507352.3|protein_coding||c.*4706A>T|||||2492|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004507353.3-1|GENE_exon-XM_004507353.3-1|transcript|rna-XM_004507353.3|protein_coding||c.*1078T>A|||||809|,T|downstream_gene_variant|MODIFIER|exon-XM_004507355.3-1|GENE_exon-XM_004507355.3-1|transcript|rna-XM_004507355.3|protein_coding||c.*4086T>A|||||3922|,T|intergenic_region|MODIFIER|exon-XM_004507352.3-1-exon-XM_004507353.3-1|GENE_exon-XM_004507352.3-1-GENE_exon-XM_004507353.3-1|intergenic_region|GENE_exon-XM_004507352.3-1-GENE_exon-XM_004507353.3-1|||n.57990795A>T||||||;DP=83;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.20;QD=24.13;SOR=1.845;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",57993125,".","C","T","1/1","0/0",1481.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004507352.3-1|GENE_exon-XM_004507352.3-1|transcript|rna-XM_004507352.3|protein_coding||c.-5514G>A|||||4822|,T|upstream_gene_variant|MODIFIER|exon-XM_004507353.3-1|GENE_exon-XM_004507353.3-1|transcript|rna-XM_004507353.3|protein_coding||c.-935G>A|||||858|,T|upstream_gene_variant|MODIFIER|LOC101493126|gene-LOC101493126|transcript|XM_004507355.3|protein_coding||c.-6919C>T|||||1592|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101492122|gene-LOC101492122|transcript|XM_004507352.3|protein_coding||c.*7036C>T|||||4822|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101492463|gene-LOC101492463|transcript|XM_004507353.3|protein_coding||c.*1521C>T|||||858|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004507355.3-1|GENE_exon-XM_004507355.3-1|transcript|rna-XM_004507355.3|protein_coding||c.*1756G>A|||||1592|,T|intergenic_region|MODIFIER|exon-XM_004507353.3-1-exon-XM_004507355.3-1|GENE_exon-XM_004507353.3-1-GENE_exon-XM_004507355.3-1|intergenic_region|GENE_exon-XM_004507353.3-1-GENE_exon-XM_004507355.3-1|||n.57993125C>T||||||;DP=81;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=43.57;QD=32.32;SOR=1.885;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",57998337,".","C","G","1/1","0/0",1950.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101492797|gene-LOC101492797|transcript|XM_004507354.3|protein_coding||c.-6033C>G|||||4049|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004507354.3-1|GENE_exon-XM_004507354.3-1|transcript|rna-XM_004507354.3|protein_coding||c.*4264G>C|||||4049|,G|intron_variant|MODIFIER|exon-XM_004507355.3-1|GENE_exon-XM_004507355.3-1|transcript|rna-XM_004507355.3|protein_coding|5/12|c.696+261G>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101493126|gene-LOC101493126|transcript|XM_004507355.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=119;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.58;QD=24.08;SOR=1.581;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",58001479,".","ATG","A","1/1","0/0",1396.38,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004507355.3-1|GENE_exon-XM_004507355.3-1|transcript|rna-XM_004507355.3|protein_coding||c.-1503_-1502delCA|||||1436|,A|upstream_gene_variant|MODIFIER|LOC101492797|gene-LOC101492797|transcript|XM_004507354.3|protein_coding||c.-2890_-2889delTG|||||906|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101493457|gene-LOC101493457|transcript|XM_004507357.3|protein_coding||c.-7314_-7313delTG|||||4239|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101493126|gene-LOC101493126|transcript|XM_004507355.3|protein_coding||c.*6763_*6764delTG|||||1436|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004507354.3-1|GENE_exon-XM_004507354.3-1|transcript|rna-XM_004507354.3|protein_coding||c.*1120_*1121delCA|||||906|,A|downstream_gene_variant|MODIFIER|exon-XM_004507357.3-1|GENE_exon-XM_004507357.3-1|transcript|rna-XM_004507357.3|protein_coding||c.*4585_*4586delCA|||||4239|,A|intergenic_region|MODIFIER|exon-XM_004507355.3-1-exon-XM_004507354.3-1|GENE_exon-XM_004507355.3-1-GENE_exon-XM_004507354.3-1|intergenic_region|GENE_exon-XM_004507355.3-1-GENE_exon-XM_004507354.3-1|||n.58001480_58001481delTG||||||;DP=66;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.48;QD=30.63;SOR=1.473;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",58003185,".","T","C","1/1","0/0",1087.42,"mrd30","AC=2;AF=0.500;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004507355.3-1|GENE_exon-XM_004507355.3-1|transcript|rna-XM_004507355.3|protein_coding||c.-3207A>G|||||3141|,C|upstream_gene_variant|MODIFIER|LOC101493457|gene-LOC101493457|transcript|XM_004507357.3|protein_coding||c.-5609T>C|||||2534|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101493126|gene-LOC101493126|transcript|XM_004507355.3|protein_coding||c.*8468T>C|||||3141|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004507357.3-1|GENE_exon-XM_004507357.3-1|transcript|rna-XM_004507357.3|protein_coding||c.*2881A>G|||||2534|,C|intron_variant|MODIFIER|exon-XM_004507354.3-1|GENE_exon-XM_004507354.3-1|transcript|rna-XM_004507354.3|protein_coding|1/1|c.582-353A>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101492797|gene-LOC101492797|transcript|XM_004507354.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=64;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=41.12;QD=25.56;SOR=1.022;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",58008140,".","G","GATCCATC","1/1","0/0",1492.38,"PASS","AC=2;AF=0.500;AN=4;ANN=GATCCATC|upstream_gene_variant|MODIFIER|exon-XM_004507354.3-1|GENE_exon-XM_004507354.3-1|transcript|rna-XM_004507354.3|protein_coding||c.-3930_-3929insGATGGAT|||||3771|,GATCCATC|downstream_gene_variant|MODIFIER|LOC101492797|gene-LOC101492797|transcript|XM_004507354.3|protein_coding||c.*5754_*5755insATCCATC|||||3771|WARNING_TRANSCRIPT_NO_START_CODON,GATCCATC|intron_variant|MODIFIER|exon-XM_004507357.3-1|GENE_exon-XM_004507357.3-1|transcript|rna-XM_004507357.3|protein_coding|1/1|c.186+242_186+243insGATGGAT||||||,GATCCATC|non_coding_transcript_variant|MODIFIER|LOC101493457|gene-LOC101493457|transcript|XM_004507357.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=79;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=42.98;QD=31.85;SOR=1.418;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021165.1",58014246,".","A","G","1/1","0/0",1099.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004507357.3-1-exon-XM_004507358.3-1|GENE_exon-XM_004507357.3-1-GENE_exon-XM_004507358.3-1|intergenic_region|GENE_exon-XM_004507357.3-1-GENE_exon-XM_004507358.3-1|||n.58014246A>G||||||;DP=107;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.91;QD=15.27;SOR=0.749;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",58017540,".","C","A","1/1","0/0",1270.42,"MQ40;mrd30","AC=2;AF=0.500;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004507357.3-1-exon-XM_004507358.3-1|GENE_exon-XM_004507357.3-1-GENE_exon-XM_004507358.3-1|intergenic_region|GENE_exon-XM_004507357.3-1-GENE_exon-XM_004507358.3-1|||n.58017540C>A||||||;DP=67;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=37.51;QD=31.23;SOR=1.255;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",58020960,".","G","T","1/1","0/0",1831.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004507357.3-1-exon-XM_004507358.3-1|GENE_exon-XM_004507357.3-1-GENE_exon-XM_004507358.3-1|intergenic_region|GENE_exon-XM_004507357.3-1-GENE_exon-XM_004507358.3-1|||n.58020960G>T||||||;DP=118;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.09;QD=24.10;SOR=1.194;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",58027554,".","C","T","1/1","0/0",1420.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|synonymous_variant|LOW|exon-XM_004507358.3-1|GENE_exon-XM_004507358.3-1|transcript|rna-XM_004507358.3|protein_coding|1/3|c.123C>T|p.Ser41Ser|396/2072|123/1581|41/526||,T|non_coding_transcript_variant|MODIFIER|LOC101493986|gene-LOC101493986|transcript|XM_004507358.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=96;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=60.00;QD=24.92;SOR=0.960;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",58030498,".","C","A","1/1","0/0",2395.42,"PASS","AC=2;AF=0.500;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101494309|gene-LOC101494309|transcript|XM_004507359.3|protein_coding||c.-6509C>A|||||4049|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101493986|gene-LOC101493986|transcript|XM_004507358.3|protein_coding||c.*3339C>A|||||966|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004507358.3-1|GENE_exon-XM_004507358.3-1|transcript|rna-XM_004507358.3|protein_coding||c.*1184C>A|||||966|,A|downstream_gene_variant|MODIFIER|exon-XM_004507359.3-1|GENE_exon-XM_004507359.3-1|transcript|rna-XM_004507359.3|protein_coding||c.*4216G>T|||||4049|,A|intergenic_region|MODIFIER|exon-XM_004507358.3-1-exon-XM_004507359.3-1|GENE_exon-XM_004507358.3-1-GENE_exon-XM_004507359.3-1|intergenic_region|GENE_exon-XM_004507358.3-1-GENE_exon-XM_004507359.3-1|||n.58030498C>A||||||;DP=91;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.63;QD=29.48;SOR=1.036;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",58031846,".","GA","G","1/1","0/0",1507.38,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101494309|gene-LOC101494309|transcript|XM_004507359.3|protein_coding||c.-5160delA|||||2700|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|LOC101493986|gene-LOC101493986|transcript|XM_004507358.3|protein_coding||c.*4688delA|||||2315|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004507358.3-1|GENE_exon-XM_004507358.3-1|transcript|rna-XM_004507358.3|protein_coding||c.*2533delA|||||2315|,G|downstream_gene_variant|MODIFIER|exon-XM_004507359.3-1|GENE_exon-XM_004507359.3-1|transcript|rna-XM_004507359.3|protein_coding||c.*2867delT|||||2700|,G|intergenic_region|MODIFIER|exon-XM_004507358.3-1-exon-XM_004507359.3-1|GENE_exon-XM_004507358.3-1-GENE_exon-XM_004507359.3-1|intergenic_region|GENE_exon-XM_004507358.3-1-GENE_exon-XM_004507359.3-1|||n.58031847delA||||||;DP=101;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.54;QD=25.55;SOR=1.034;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",58032619,".","TAAAA","T","1/1","0/0",3071.38,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101494309|gene-LOC101494309|transcript|XM_004507359.3|protein_coding||c.-4387_-4384delAAAA|||||1927|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101493986|gene-LOC101493986|transcript|XM_004507358.3|protein_coding||c.*5461_*5464delAAAA|||||3088|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004507358.3-1|GENE_exon-XM_004507358.3-1|transcript|rna-XM_004507358.3|protein_coding||c.*3306_*3309delAAAA|||||3088|,T|downstream_gene_variant|MODIFIER|exon-XM_004507359.3-1|GENE_exon-XM_004507359.3-1|transcript|rna-XM_004507359.3|protein_coding||c.*2091_*2094delTTTT|||||1927|,T|intergenic_region|MODIFIER|exon-XM_004507358.3-1-exon-XM_004507359.3-1|GENE_exon-XM_004507358.3-1-GENE_exon-XM_004507359.3-1|intergenic_region|GENE_exon-XM_004507358.3-1-GENE_exon-XM_004507359.3-1|||n.58032620_58032623delAAAA||||||;DP=107;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.70;QD=28.10;SOR=0.811;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021165.1",58039267,".","A","G","1/1","0/0",2350.42,"PASS","AC=2;AF=0.500;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_004507359.3-1|GENE_exon-XM_004507359.3-1|transcript|rna-XM_004507359.3|protein_coding||c.-2269T>C|||||2260|,G|downstream_gene_variant|MODIFIER|LOC101494309|gene-LOC101494309|transcript|XM_004507359.3|protein_coding||c.*4720A>G|||||2260|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_004507359.3-1-exon-XM_004507360.3-1|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|intergenic_region|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|||n.58039267A>G||||||;DP=89;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.60;QD=26.58;SOR=0.808;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",58040905,".","A","AT","1/1","0/0",2836.38,"PASS","AC=2;AF=0.500;AN=4;ANN=AT|upstream_gene_variant|MODIFIER|exon-XM_004507359.3-1|GENE_exon-XM_004507359.3-1|transcript|rna-XM_004507359.3|protein_coding||c.-3908_-3907insA|||||3899|,AT|downstream_gene_variant|MODIFIER|LOC101494309|gene-LOC101494309|transcript|XM_004507359.3|protein_coding||c.*6358_*6359insT|||||3899|WARNING_TRANSCRIPT_NO_START_CODON,AT|intergenic_region|MODIFIER|exon-XM_004507359.3-1-exon-XM_004507360.3-1|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|intergenic_region|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|||n.58040905_58040906insT||||||;DP=96;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=54.34;QD=29.93;SOR=1.355;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",58046893,".","C","T","1/1","0/0",1418.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101494620|gene-LOC101494620|transcript|XM_004507360.3|protein_coding||c.-6993C>T|||||2559|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004507360.3-1|GENE_exon-XM_004507360.3-1|transcript|rna-XM_004507360.3|protein_coding||c.*2760G>A|||||2559|,T|intergenic_region|MODIFIER|exon-XM_004507359.3-1-exon-XM_004507360.3-1|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|intergenic_region|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|||n.58046893C>T||||||;DP=98;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.40;QD=23.25;SOR=1.392;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021165.1",58048793,".","T","TC","1/1","0/0",2926.38,"PASS","AC=2;AF=0.500;AN=4;ANN=TC|upstream_gene_variant|MODIFIER|LOC101494620|gene-LOC101494620|transcript|XM_004507360.3|protein_coding||c.-5093_-5092insC|||||658|WARNING_TRANSCRIPT_NO_START_CODON,TC|downstream_gene_variant|MODIFIER|exon-XM_004507360.3-1|GENE_exon-XM_004507360.3-1|transcript|rna-XM_004507360.3|protein_coding||c.*859_*860insG|||||658|,TC|intergenic_region|MODIFIER|exon-XM_004507359.3-1-exon-XM_004507360.3-1|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|intergenic_region|GENE_exon-XM_004507359.3-1-GENE_exon-XM_004507360.3-1|||n.58048793_58048794insC||||||;DP=102;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.89;QD=25.88;SOR=0.886;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021165.1",58054290,".","C","T","1/1","0/0",1405.42,"PASS","AC=2;AF=0.500;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004507360.3-1|GENE_exon-XM_004507360.3-1|transcript|rna-XM_004507360.3|protein_coding||c.-495G>A|||||404|,T|downstream_gene_variant|MODIFIER|LOC101494620|gene-LOC101494620|transcript|XM_004507360.3|protein_coding||c.*4838C>T|||||404|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004507360.3-1-exon-XM_004507361.3-1|GENE_exon-XM_004507360.3-1-GENE_exon-XM_004507361.3-1|intergenic_region|GENE_exon-XM_004507360.3-1-GENE_exon-XM_004507361.3-1|||n.58054290C>T||||||;DP=73;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=58.39;QD=33.03;SOR=1.911;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021166.1",156474,".","C","T","1/1","0/1",2123.19,"PASS","AC=3;AF=0.750;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027337219.1-1|GENE_exon-XM_027337219.1-1|transcript|rna-XM_027337219.1|protein_coding||c.-4055G>A|||||4031|,T|upstream_gene_variant|MODIFIER|LOC113787836|gene-LOC113787836|transcript|XM_027337218.1|protein_coding||c.-1394C>T|||||113|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|LOC101503558|gene-LOC101503558|transcript|XM_027337219.1|protein_coding||c.*4982C>T|||||4031|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_027337218.1-1|GENE_exon-XM_027337218.1-1|transcript|rna-XM_027337218.1|protein_coding||c.*285G>A|||||113|,T|intergenic_region|MODIFIER|exon-XM_027337219.1-1-exon-XM_027337218.1-1|GENE_exon-XM_027337219.1-1-GENE_exon-XM_027337218.1-1|intergenic_region|GENE_exon-XM_027337219.1-1-GENE_exon-XM_027337218.1-1|||n.156474C>T||||||;BaseQRankSum=1.38;ClippingRankSum=0.00;DP=104;ExcessHet=3.0103;FS=22.282;MLEAC=3;MLEAF=0.750;MQ=42.14;MQRankSum=5.75;QD=20.42;ReadPosRankSum=1.47;SOR=0.255;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021166.1",565659,".","G","C","0/0","0/1",27.54,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004507568.3-1-exon-XR_003474203.1-1|GENE_exon-XM_004507568.3-1-GENE_exon-XR_003474203.1-1|intergenic_region|GENE_exon-XM_004507568.3-1-GENE_exon-XR_003474203.1-1|||n.565659G>C||||||;BaseQRankSum=1.34;ClippingRankSum=0.00;DP=16;ExcessHet=3.0103;FS=17.404;MLEAC=1;MLEAF=0.250;MQ=28.66;MQRankSum=-1.097e+00;QD=2.50;ReadPosRankSum=2.36;SOR=2.198;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",760559,".","T","A","0/1","0/0",179.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004507594.3-1|GENE_exon-XM_004507594.3-1|transcript|rna-XM_004507594.3|protein_coding||c.-2961A>T|||||2219|,A|upstream_gene_variant|MODIFIER|LOC101488800|gene-LOC101488800|transcript|XM_004507596.3|protein_coding||c.-2975T>A|||||445|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101489127|gene-LOC101489127|transcript|XM_004507598.3|protein_coding||c.-10812T>A|||||4917|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC101489127|gene-LOC101489127|transcript|XR_001144319.2|pseudogene||n.-10812T>A|||||4917|,A|upstream_gene_variant|MODIFIER|LOC101489127|gene-LOC101489127|transcript|XR_190113.3|pseudogene||n.-10817T>A|||||4917|,A|downstream_gene_variant|MODIFIER|LOC101488226|gene-LOC101488226|transcript|XM_004507594.3|protein_coding||c.*5534T>A|||||2219|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004507596.3-1|GENE_exon-XM_004507596.3-1|transcript|rna-XM_004507596.3|protein_coding||c.*730A>T|||||445|,A|downstream_gene_variant|MODIFIER|exon-XM_004507598.3-1|GENE_exon-XM_004507598.3-1|transcript|rna-XM_004507598.3|protein_coding||c.*5757A>T|||||4917|,A|downstream_gene_variant|MODIFIER|exon-XR_001144319.2-1|GENE_exon-XR_001144319.2-1|transcript|rna-XR_001144319.2|pseudogene||n.*4917A>T|||||4917|,A|downstream_gene_variant|MODIFIER|exon-XR_190113.3-1|GENE_exon-XR_190113.3-1|transcript|rna-XR_190113.3|pseudogene||n.*4917A>T|||||4917|,A|intergenic_region|MODIFIER|exon-XM_004507594.3-1-exon-XM_004507596.3-1|GENE_exon-XM_004507594.3-1-GENE_exon-XM_004507596.3-1|intergenic_region|GENE_exon-XM_004507594.3-1-GENE_exon-XM_004507596.3-1|||n.760559T>A||||||;BaseQRankSum=-7.500e-02;ClippingRankSum=0.00;DP=265;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.250;MQ=48.22;MQRankSum=-5.431e+00;QD=1.89;ReadPosRankSum=-1.132e+00;SOR=1.055;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",2360920,".","G","A","0/1","0/0",28.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|5_prime_UTR_variant|MODIFIER|exon-XM_012717953.2-1|GENE_exon-XM_012717953.2-1|transcript|rna-XM_012717953.2|protein_coding|2/5|c.-69G>A|||||159|,A|intron_variant|MODIFIER|exon-XM_004507807.3-1|GENE_exon-XM_004507807.3-1|transcript|rna-XM_004507807.3|protein_coding|2/4|c.26-121G>A||||||,A|non_coding_transcript_variant|MODIFIER|LOC101498781|gene-LOC101498781|transcript|XM_004507807.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101498781|gene-LOC101498781|transcript|XM_012717953.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=3.80;ClippingRankSum=0.00;DP=147;ExcessHet=3.0103;FS=30.284;MLEAC=1;MLEAF=0.250;MQ=56.29;MQRankSum=-8.611e+00;QD=0.35;ReadPosRankSum=-7.870e-01;SOR=5.080;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",6903927,".","C","T","0/1","0/0",36.21,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_027337197.1-1|GENE_exon-XM_027337197.1-1|transcript|rna-XM_027337197.1|protein_coding|2/2|c.152+399G>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC101508273|gene-LOC101508273|transcript|XM_027337197.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=3.59;ClippingRankSum=0.00;DP=161;ExcessHet=3.0103;FS=2.660;MLEAC=1;MLEAF=0.250;MQ=55.97;MQRankSum=-8.153e+00;QD=0.53;ReadPosRankSum=1.07;SOR=1.144;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",8192565,".","G","A","0/0","0/1",108.19,"map","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004508627.3-1|GENE_exon-XM_004508627.3-1|transcript|rna-XM_004508627.3|protein_coding||c.-3483C>T|||||3178|,A|downstream_gene_variant|MODIFIER|LOC101489671|gene-LOC101489671|transcript|XM_004508627.3|protein_coding||c.*7122G>A|||||3178|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004508627.3-1-exon-XM_004508628.3-1|GENE_exon-XM_004508627.3-1-GENE_exon-XM_004508628.3-1|intergenic_region|GENE_exon-XM_004508627.3-1-GENE_exon-XM_004508628.3-1|||n.8192565G>A||||||;BaseQRankSum=1.16;ClippingRankSum=0.00;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=51.20;MQRankSum=0.425;QD=2.46;ReadPosRankSum=0.808;SOR=0.436;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",9033982,".","A","ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG","0/0","1/1",404.4,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|upstream_gene_variant|MODIFIER|LOC101501952|gene-LOC101501952|transcript|XM_004508752.3|protein_coding||c.-3468_-3467insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG|||||719|WARNING_TRANSCRIPT_NO_START_CODON,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|downstream_gene_variant|MODIFIER|LOC101500897|gene-LOC101500897|transcript|XM_012718134.2|protein_coding||c.*19268_*19269insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG|||||4403|WARNING_TRANSCRIPT_NO_START_CODON,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|downstream_gene_variant|MODIFIER|exon-XM_012718134.2-1|GENE_exon-XM_012718134.2-1|transcript|rna-XM_012718134.2|protein_coding||c.*4777_*4778insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG|||||4403|,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|downstream_gene_variant|MODIFIER|exon-XM_027336604.1-1|GENE_exon-XM_027336604.1-1|transcript|rna-XM_027336604.1|protein_coding||c.*651_*652insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG|||||322|,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|downstream_gene_variant|MODIFIER|LOC101501226|gene-LOC101501226|transcript|XM_027336603.1|protein_coding||c.*3254_*3255insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG|||||322|WARNING_TRANSCRIPT_NO_START_CODON,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|downstream_gene_variant|MODIFIER|exon-XM_027336603.1-1|GENE_exon-XM_027336603.1-1|transcript|rna-XM_027336603.1|protein_coding||c.*651_*652insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG|||||322|,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|downstream_gene_variant|MODIFIER|exon-XM_004508752.3-1|GENE_exon-XM_004508752.3-1|transcript|rna-XM_004508752.3|protein_coding||c.*1151_*1152insCAGTGAATAAGTGTGACTACCTCTCTTTTCAAA|||||719|,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|downstream_gene_variant|MODIFIER|LOC101501226|gene-LOC101501226|transcript|XM_027336604.1|protein_coding||c.*3259_*3260insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG|||||322|WARNING_TRANSCRIPT_NO_START_CODON,ATTTGAAAAGAGAGGTAGTCACACTTATTCACTG|intergenic_region|MODIFIER|exon-XM_027336604.1-1-exon-XM_004508752.3-1|GENE_exon-XM_027336604.1-1-GENE_exon-XM_004508752.3-1|intergenic_region|GENE_exon-XM_027336604.1-1-GENE_exon-XM_004508752.3-1|||n.9033982_9033983insTTTGAAAAGAGAGGTAGTCACACTTATTCACTG||||||;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=52.26;QD=28.31;SOR=1.609;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",9210566,".","T","C","0/1","1/1",741.23,"mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XR_003474272.1-1|GENE_exon-XR_003474272.1-1|transcript|rna-XR_003474272.1|pseudogene||n.-3813A>G|||||3813|,C|upstream_gene_variant|MODIFIER|exon-XR_003474271.1-1|GENE_exon-XR_003474271.1-1|transcript|rna-XR_003474271.1|pseudogene||n.-3809A>G|||||3809|,C|upstream_gene_variant|MODIFIER|LOC101503009|gene-LOC101503009|transcript|XM_027336975.1|protein_coding||c.-6360T>C|||||3778|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XR_003474270.1-1|GENE_exon-XR_003474270.1-1|transcript|rna-XR_003474270.1|pseudogene||n.*1017A>G|||||1017|,C|downstream_gene_variant|MODIFIER|exon-XR_001144367.2-1|GENE_exon-XR_001144367.2-1|transcript|rna-XR_001144367.2|pseudogene||n.*1017A>G|||||1017|,C|downstream_gene_variant|MODIFIER|exon-XM_027336975.1-1|GENE_exon-XM_027336975.1-1|transcript|rna-XM_027336975.1|protein_coding||c.*4566A>G|||||3778|,C|intergenic_region|MODIFIER|exon-XR_003474271.1-1-exon-XR_003474270.1-1|GENE_exon-XR_003474271.1-1-GENE_exon-XR_003474270.1-1|intergenic_region|GENE_exon-XR_003474271.1-1-GENE_exon-XR_003474270.1-1|||n.9210566T>C||||||;BaseQRankSum=-2.153e+00;ClippingRankSum=0.00;DP=20;ExcessHet=3.0103;FS=7.225;MLEAC=3;MLEAF=0.750;MQ=43.04;MQRankSum=2.80;QD=29.99;ReadPosRankSum=-6.920e-01;SOR=0.859;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",9248806,".","C","A","0/1","0/0",87.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_027336976.1-1|GENE_exon-XM_027336976.1-1|transcript|rna-XM_027336976.1|protein_coding||c.-5471G>T|||||4630|,A|upstream_gene_variant|MODIFIER|exon-XR_003474265.1-1|GENE_exon-XR_003474265.1-1|transcript|rna-XR_003474265.1|pseudogene||n.-4630G>T|||||4630|,A|upstream_gene_variant|MODIFIER|exon-XR_003474266.1-1|GENE_exon-XR_003474266.1-1|transcript|rna-XR_003474266.1|pseudogene||n.-4630G>T|||||4630|,A|upstream_gene_variant|MODIFIER|exon-XR_003474264.1-1|GENE_exon-XR_003474264.1-1|transcript|rna-XR_003474264.1|pseudogene||n.-4630G>T|||||4630|,A|downstream_gene_variant|MODIFIER|LOC101503995|gene-LOC101503995|transcript|XM_027336976.1|protein_coding||c.*7989C>A|||||4630|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XR_001144358.2-1|GENE_exon-XR_001144358.2-1|transcript|rna-XR_001144358.2|pseudogene||n.*608G>T|||||608|,A|downstream_gene_variant|MODIFIER|LOC101503995|gene-LOC101503995|transcript|XR_003474265.1|pseudogene||n.*7989C>A|||||4630|,A|downstream_gene_variant|MODIFIER|LOC101503995|gene-LOC101503995|transcript|XR_003474266.1|pseudogene||n.*7989C>A|||||4630|,A|downstream_gene_variant|MODIFIER|LOC101503995|gene-LOC101503995|transcript|XR_003474264.1|pseudogene||n.*7629C>A|||||4630|,A|intragenic_variant|MODIFIER|LOC105852480|gene-LOC105852480|gene_variant|gene-LOC105852480|||n.9248806C>A||||||,A|non_coding_transcript_exon_variant|MODIFIER|exon-XR_003474269.1-1|GENE_exon-XR_003474269.1-1|transcript|rna-XR_003474269.1|pseudogene|4/5|n.3094G>T||||||;BaseQRankSum=4.43;ClippingRankSum=0.00;DP=87;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.250;MQ=54.98;MQRankSum=-1.761e+00;QD=1.98;ReadPosRankSum=-2.478e+00;SOR=0.517;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",9340338,".","C","A","0/1","0/0",12.44,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101512452|gene-LOC101512452|transcript|XM_004508779.3|protein_coding||c.-5618C>A|||||2931|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004508779.3-1|GENE_exon-XM_004508779.3-1|transcript|rna-XM_004508779.3|protein_coding||c.-2981C>A|||||2931|,A|downstream_gene_variant|MODIFIER|exon-XR_003474033.1-1|GENE_exon-XR_003474033.1-1|transcript|rna-XR_003474033.1|pseudogene||n.*3888G>T|||||3888|,A|intergenic_region|MODIFIER|LOC101505271-exon-XM_004508779.3-1|LOC101505271-GENE_exon-XM_004508779.3-1|intergenic_region|LOC101505271-GENE_exon-XM_004508779.3-1|||n.9340338C>A||||||;BaseQRankSum=2.63;ClippingRankSum=0.00;DP=153;ExcessHet=3.0103;FS=22.524;MLEAC=1;MLEAF=0.250;MQ=51.89;MQRankSum=3.23;QD=0.18;ReadPosRankSum=-8.050e-01;SOR=3.239;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",9913702,".","C","T","0/1","1/1",480.21,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012718174.2-1-exon-XM_004508871.3-1|GENE_exon-XM_012718174.2-1-GENE_exon-XM_004508871.3-1|intergenic_region|GENE_exon-XM_012718174.2-1-GENE_exon-XM_004508871.3-1|||n.9913702C>T||||||;BaseQRankSum=2.05;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=10.372;MLEAC=3;MLEAF=0.750;MQ=28.49;MQRankSum=2.37;QD=17.79;ReadPosRankSum=-1.002e+00;SOR=4.003;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",12743474,".","C","CTAACGAGTTATGGCAAAGG","0/1","0/0",427.98,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=CTAACGAGTTATGGCAAAGG|upstream_gene_variant|MODIFIER|exon-XM_004509112.3-1|GENE_exon-XM_004509112.3-1|transcript|rna-XM_004509112.3|protein_coding||c.-1232_-1231insCCTTTGCCATAACTCGTTA|||||1139|,CTAACGAGTTATGGCAAAGG|upstream_gene_variant|MODIFIER|LOC101512129|gene-LOC101512129|transcript|XM_027336713.1|protein_coding||c.-7583_-7582insTAACGAGTTATGGCAAAGG|||||2654|WARNING_TRANSCRIPT_NO_START_CODON,CTAACGAGTTATGGCAAAGG|upstream_gene_variant|MODIFIER|exon-XM_027336713.1-1|GENE_exon-XM_027336713.1-1|transcript|rna-XM_027336713.1|protein_coding||c.-2945_-2944insTAACGAGTTATGGCAAAGG|||||2654|,CTAACGAGTTATGGCAAAGG|downstream_gene_variant|MODIFIER|LOC101511817|gene-LOC101511817|transcript|XM_004509112.3|protein_coding||c.*4009_*4010insTAACGAGTTATGGCAAAGG|||||1139|WARNING_TRANSCRIPT_NO_START_CODON,CTAACGAGTTATGGCAAAGG|intergenic_region|MODIFIER|exon-XM_004509112.3-1-exon-XM_027336713.1-1|GENE_exon-XM_004509112.3-1-GENE_exon-XM_027336713.1-1|intergenic_region|GENE_exon-XM_004509112.3-1-GENE_exon-XM_027336713.1-1|||n.12743474_12743475insTAACGAGTTATGGCAAAGG||||||;BaseQRankSum=1.20;ClippingRankSum=0.00;DP=28;ExcessHet=3.0103;FS=22.665;MLEAC=1;MLEAF=0.250;MQ=52.74;MQRankSum=-2.583e+00;QD=25.18;ReadPosRankSum=-1.051e+00;SOR=3.413;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",13140698,".","A","T","0/0","0/1",173.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_003474430.1-1-exon-XR_003474248.1-1|GENE_exon-XR_003474430.1-1-GENE_exon-XR_003474248.1-1|intergenic_region|GENE_exon-XR_003474430.1-1-GENE_exon-XR_003474248.1-1|||n.13140698A>T||||||;BaseQRankSum=2.26;ClippingRankSum=0.00;DP=92;ExcessHet=3.0103;FS=22.968;MLEAC=1;MLEAF=0.250;MQ=59.55;MQRankSum=-2.237e+00;QD=3.46;ReadPosRankSum=-1.464e+00;SOR=4.403;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",14115428,".","C","T","0/0","0/1",152.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012718248.1-1-exon-XM_004509245.3-1|GENE_exon-XM_012718248.1-1-GENE_exon-XM_004509245.3-1|intergenic_region|GENE_exon-XM_012718248.1-1-GENE_exon-XM_004509245.3-1|||n.14115428C>T||||||;BaseQRankSum=0.975;ClippingRankSum=0.00;DP=45;ExcessHet=3.0103;FS=14.548;MLEAC=1;MLEAF=0.250;MQ=51.17;MQRankSum=-3.241e+00;QD=6.92;ReadPosRankSum=0.853;SOR=3.593;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",14574989,".","G","A","0/1","0/0",15.4,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004509280.3-1|GENE_exon-XM_004509280.3-1|transcript|rna-XM_004509280.3|protein_coding|7/11|c.871-2247C>T||||||,A|intron_variant|MODIFIER|exon-XM_012718299.2-1|GENE_exon-XM_012718299.2-1|transcript|rna-XM_012718299.2|protein_coding|7/10|c.871-2247C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101514308|gene-LOC101514308|transcript|XM_004509280.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101514308|gene-LOC101514308|transcript|XM_012718299.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.59;ClippingRankSum=0.00;DP=114;ExcessHet=3.0103;FS=7.824;MLEAC=1;MLEAF=0.250;MQ=48.00;MQRankSum=2.00;QD=0.27;ReadPosRankSum=1.64;SOR=0.436;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",15679196,".","A","G","0/0","0/1",70.44,"map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027337204.1-1-LOC113787722|GENE_exon-XM_027337204.1-1-LOC113787722|intergenic_region|GENE_exon-XM_027337204.1-1-LOC113787722|||n.15679196A>G||||||;BaseQRankSum=-1.854e+00;ClippingRankSum=0.00;DP=45;ExcessHet=3.0103;FS=23.432;MLEAC=1;MLEAF=0.250;MQ=53.76;MQRankSum=-2.410e-01;QD=2.61;ReadPosRankSum=-1.410e-01;SOR=3.589;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",15917137,".","T","C","0/0","0/1",1387.87,"PASS","AC=1;AF=0.250;AN=4;ANN=C|synonymous_variant|LOW|exon-XM_004509404.3-1|GENE_exon-XM_004509404.3-1|transcript|rna-XM_004509404.3|protein_coding|8/15|c.823T>C|p.Leu275Leu|1082/2253|823/1761|275/586||,C|non_coding_transcript_variant|MODIFIER|LOC101496809|gene-LOC101496809|transcript|XM_004509404.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-2.522e+00;ClippingRankSum=0.00;DP=180;ExcessHet=3.9794;FS=1.670;MLEAC=2;MLEAF=0.500;MQ=55.41;MQRankSum=-9.836e+00;QD=13.47;ReadPosRankSum=-3.331e+00;SOR=0.510;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",16085853,".","A","G","1/1","0/1",458.19,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|LOC101489354-exon-XR_003474252.1-1|LOC101489354-GENE_exon-XR_003474252.1-1|intergenic_region|LOC101489354-GENE_exon-XR_003474252.1-1|||n.16085853A>G||||||;BaseQRankSum=0.674;ClippingRankSum=0.00;DP=14;ExcessHet=3.0103;FS=8.451;MLEAC=3;MLEAF=0.750;MQ=28.12;MQRankSum=1.38;QD=32.73;ReadPosRankSum=-1.383e+00;SOR=5.136;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",16940996,".","A","G","0/0","0/1",188.19,"BQB;MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101506570|gene-LOC101506570|transcript|XM_004509509.3|protein_coding||c.*7018A>G|||||4596|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004509509.3-1|GENE_exon-XM_004509509.3-1|transcript|rna-XM_004509509.3|protein_coding||c.*4814A>G|||||4596|,G|intergenic_region|MODIFIER|exon-XM_004509509.3-1-exon-XM_004509510.3-1|GENE_exon-XM_004509509.3-1-GENE_exon-XM_004509510.3-1|intergenic_region|GENE_exon-XM_004509509.3-1-GENE_exon-XM_004509510.3-1|||n.16940996A>G||||||;BaseQRankSum=-6.351e+00;ClippingRankSum=0.00;DP=340;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.250;MQ=28.48;MQRankSum=3.18;QD=1.20;ReadPosRankSum=-2.110e-01;SOR=0.782;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",17411239,".","A","G","0/0","0/1",187.19,"map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027336444.1-1-exon-XM_004509545.1-1|GENE_exon-XM_027336444.1-1-GENE_exon-XM_004509545.1-1|intergenic_region|GENE_exon-XM_027336444.1-1-GENE_exon-XM_004509545.1-1|||n.17411239A>G||||||;BaseQRankSum=-2.173e+00;ClippingRankSum=0.00;DP=137;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.250;MQ=55.88;MQRankSum=-7.052e+00;QD=2.64;ReadPosRankSum=1.44;SOR=0.527;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",17667643,".","T","A","0/1","0/0",216.87,"map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004509557.3-1-exon-XM_004509558.3-1|GENE_exon-XM_004509557.3-1-GENE_exon-XM_004509558.3-1|intergenic_region|GENE_exon-XM_004509557.3-1-GENE_exon-XM_004509558.3-1|||n.17667643T>A||||||;BaseQRankSum=-1.402e+00;ClippingRankSum=0.00;DP=68;ExcessHet=3.9794;FS=10.687;MLEAC=2;MLEAF=0.500;MQ=55.39;MQRankSum=0.448;QD=6.78;ReadPosRankSum=0.175;SOR=0.038;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",17946495,".","A","G","0/1","0/0",57.19,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_001144406.2-1-exon-XM_012718361.2-1|GENE_exon-XR_001144406.2-1-GENE_exon-XM_012718361.2-1|intergenic_region|GENE_exon-XR_001144406.2-1-GENE_exon-XM_012718361.2-1|||n.17946495A>G||||||;BaseQRankSum=-3.291e+00;ClippingRankSum=0.00;DP=54;ExcessHet=3.0103;FS=9.253;MLEAC=1;MLEAF=0.250;MQ=46.51;MQRankSum=-1.242e+00;QD=1.91;ReadPosRankSum=1.53;SOR=0.027;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",18190631,".","A","G","0/1","0/0",114.3,"QD2;SB60SNV;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027336845.1-1-exon-XM_004509607.1-1|GENE_exon-XM_027336845.1-1-GENE_exon-XM_004509607.1-1|intergenic_region|GENE_exon-XM_027336845.1-1-GENE_exon-XM_004509607.1-1|||n.18190631A>G||||||;BaseQRankSum=-2.634e+00;ClippingRankSum=0.00;DP=126;ExcessHet=3.0103;FS=60.948;MLEAC=1;MLEAF=0.250;MQ=55.77;MQRankSum=-4.225e+00;QD=1.76;ReadPosRankSum=-1.698e+00;SOR=5.782;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",18545323,".","A","G","0/1","1/1",209.54,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_012718364.2-1-exon-XM_004509615.3-1|GENE_exon-XM_012718364.2-1-GENE_exon-XM_004509615.3-1|intergenic_region|GENE_exon-XM_012718364.2-1-GENE_exon-XM_004509615.3-1|||n.18545323A>G||||||;BaseQRankSum=-3.403e+00;ClippingRankSum=0.00;DP=19;ExcessHet=3.0103;FS=16.107;MLEAC=3;MLEAF=0.750;MQ=29.84;MQRankSum=1.18;QD=11.64;ReadPosRankSum=1.23;SOR=5.136;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",18907206,".","C","A","1/1","0/1",1098.19,"MQ40;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101492475|LOC101492475|transcript|gene-LOC101492475|pseudogene||n.-1203C>A|||||1203|,A|upstream_gene_variant|MODIFIER|LOC101492808|gene-LOC101492808|transcript|XM_012718390.2|protein_coding||c.-7455C>A|||||4815|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012718390.2-1|GENE_exon-XM_012718390.2-1|transcript|rna-XM_012718390.2|protein_coding||c.*5003G>T|||||4815|,A|intergenic_region|MODIFIER|exon-XR_003474342.1-1-LOC101492475|GENE_exon-XR_003474342.1-1-LOC101492475|intergenic_region|GENE_exon-XR_003474342.1-1-LOC101492475|||n.18907206C>A||||||;BaseQRankSum=1.74;ClippingRankSum=0.00;DP=26;ExcessHet=3.0103;FS=3.510;MLEAC=3;MLEAF=0.750;MQ=20.87;MQRankSum=0.00;QD=30.69;ReadPosRankSum=0.108;SOR=2.303;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",19650682,".","C","T","0/0","0/1",821.87,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004509669.3-1-exon-XM_027337105.1-1|GENE_exon-XM_004509669.3-1-GENE_exon-XM_027337105.1-1|intergenic_region|GENE_exon-XM_004509669.3-1-GENE_exon-XM_027337105.1-1|||n.19650682C>T||||||;BaseQRankSum=2.46;ClippingRankSum=0.00;DP=164;ExcessHet=3.9794;FS=20.683;MLEAC=2;MLEAF=0.500;MQ=54.53;MQRankSum=-9.303e+00;QD=9.13;ReadPosRankSum=-2.124e+00;SOR=2.377;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",19907076,".","C","G","0/0","0/1",61.02,"map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004509675.3-1-exon-XM_012718404.2-1|GENE_exon-XM_004509675.3-1-GENE_exon-XM_012718404.2-1|intergenic_region|GENE_exon-XM_004509675.3-1-GENE_exon-XM_012718404.2-1|||n.19907076C>G||||||;BaseQRankSum=1.23;ClippingRankSum=0.00;DP=35;ExcessHet=3.0103;FS=6.876;MLEAC=1;MLEAF=0.250;MQ=48.17;MQRankSum=-6.250e-01;QD=4.07;ReadPosRankSum=0.943;SOR=0.064;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",20402649,".","T","C","0/1","0/0",47.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_012718384.2-1-exon-XM_004509709.3-1|GENE_exon-XM_012718384.2-1-GENE_exon-XM_004509709.3-1|intergenic_region|GENE_exon-XM_012718384.2-1-GENE_exon-XM_004509709.3-1|||n.20402649T>C||||||;BaseQRankSum=-4.388e+00;ClippingRankSum=0.00;DP=103;ExcessHet=3.0103;FS=19.280;MLEAC=1;MLEAF=0.250;MQ=54.68;MQRankSum=-6.584e+00;QD=0.79;ReadPosRankSum=0.617;SOR=4.110;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021166.1",21251180,".","T","C","0/1","0/0",16.29,"QD2;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intragenic_variant|MODIFIER|LOC113787828|gene-LOC113787828|gene_variant|gene-LOC113787828|||n.21251180T>C||||||,C|non_coding_transcript_exon_variant|MODIFIER|exon-XR_003474347.1-1|GENE_exon-XR_003474347.1-1|transcript|rna-XR_003474347.1|pseudogene|2/2|n.230A>G||||||;BaseQRankSum=-2.913e+00;ClippingRankSum=0.00;DP=27;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.250;MQ=51.73;MQRankSum=-3.385e+00;QD=1.09;ReadPosRankSum=-1.310e+00;SOR=1.781;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",21673918,".","ATTATTATTATTATTAATATTAATATTAT","A","0/1","0/0",19.21,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_003474197.1-1|GENE_exon-XR_003474197.1-1|transcript|rna-XR_003474197.1|pseudogene||n.-2930_-2903delATAATATTAATATTAATAATAATAATAA|||||2903|,A|intergenic_region|MODIFIER|exon-XR_003474197.1-1-exon-XM_012718458.2-1|GENE_exon-XR_003474197.1-1-GENE_exon-XM_012718458.2-1|intergenic_region|GENE_exon-XR_003474197.1-1-GENE_exon-XM_012718458.2-1|||n.21673919_21673946delTTATTATTATTATTAATATTAATATTAT||||||;BaseQRankSum=0.569;ClippingRankSum=0.00;DP=131;ExcessHet=3.0103;FS=3.157;MLEAC=1;MLEAF=0.250;MQ=45.50;MQRankSum=-1.814e+00;QD=0.45;ReadPosRankSum=-9.210e-01;SOR=1.366;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",21817547,".","G","T","0/0","0/1",12.44,"QD2;mrd30","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|LOC101500798|gene-LOC101500798|transcript|XM_004509803.3|protein_coding||c.*8157G>T|||||1495|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004509803.3-1|GENE_exon-XM_004509803.3-1|transcript|rna-XM_004509803.3|protein_coding||c.*1634G>T|||||1495|,T|downstream_gene_variant|MODIFIER|exon-XM_012718416.2-1|GENE_exon-XM_012718416.2-1|transcript|rna-XM_012718416.2|protein_coding||c.*1634G>T|||||1495|,T|downstream_gene_variant|MODIFIER|LOC101500798|gene-LOC101500798|transcript|XM_012718416.2|protein_coding||c.*8157G>T|||||1495|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004509803.3-1-exon-XM_004509845.1-1|GENE_exon-XM_004509803.3-1-GENE_exon-XM_004509845.1-1|intergenic_region|GENE_exon-XM_004509803.3-1-GENE_exon-XM_004509845.1-1|||n.21817547G>T||||||;BaseQRankSum=-7.490e-01;ClippingRankSum=0.00;DP=53;ExcessHet=3.0103;FS=11.964;MLEAC=1;MLEAF=0.250;MQ=57.13;MQRankSum=-4.760e+00;QD=0.40;ReadPosRankSum=-1.839e+00;SOR=2.793;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",22186425,".","A","G","0/1","0/0",99.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_012718415.2-1-exon-NM_001309704.1-1|GENE_exon-XM_012718415.2-1-GENE_exon-NM_001309704.1-1|intergenic_region|GENE_exon-XM_012718415.2-1-GENE_exon-NM_001309704.1-1|||n.22186425A>G||||||;BaseQRankSum=-3.763e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=10.866;MLEAC=1;MLEAF=0.250;MQ=57.56;MQRankSum=-6.087e+00;QD=2.11;ReadPosRankSum=-2.510e-01;SOR=3.089;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",22838284,".","A","G","0/1","0/0",30.19,"MQ40;QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004509861.3-1-exon-XM_004509862.3-1|GENE_exon-XM_004509861.3-1-GENE_exon-XM_004509862.3-1|intergenic_region|GENE_exon-XM_004509861.3-1-GENE_exon-XM_004509862.3-1|||n.22838284A>G||||||;BaseQRankSum=-2.555e+00;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=15.357;MLEAC=1;MLEAF=0.250;MQ=30.16;MQRankSum=-1.936e+00;QD=1.21;ReadPosRankSum=-2.930e-01;SOR=0.815;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",22908881,".","A","T","0/1","0/0",26.2,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004509863.3-1-exon-XR_003474068.1-1|GENE_exon-XM_004509863.3-1-GENE_exon-XR_003474068.1-1|intergenic_region|GENE_exon-XM_004509863.3-1-GENE_exon-XR_003474068.1-1|||n.22908881A>T||||||;BaseQRankSum=0.374;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=5.932;MLEAC=1;MLEAF=0.250;MQ=33.72;MQRankSum=-1.271e+00;QD=2.02;ReadPosRankSum=-8.450e-01;SOR=2.448;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",23037859,".","G","T","0/0","0/1",131.19,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012718471.2-1-exon-XM_004509866.3-1|GENE_exon-XM_012718471.2-1-GENE_exon-XM_004509866.3-1|intergenic_region|GENE_exon-XM_012718471.2-1-GENE_exon-XM_004509866.3-1|||n.23037859G>T||||||;BaseQRankSum=3.60;ClippingRankSum=0.00;DP=210;ExcessHet=3.0103;FS=3.841;MLEAC=1;MLEAF=0.250;MQ=50.29;MQRankSum=-5.395e+00;QD=1.35;ReadPosRankSum=0.617;SOR=0.336;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",23191524,".","T","G","0/0","0/1",482.87,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004509870.3-1-LOC113787728|GENE_exon-XM_004509870.3-1-LOC113787728|intergenic_region|GENE_exon-XM_004509870.3-1-LOC113787728|||n.23191524T>G||||||;BaseQRankSum=-1.366e+00;ClippingRankSum=0.00;DP=109;ExcessHet=3.9794;FS=33.835;MLEAC=2;MLEAF=0.500;MQ=57.60;MQRankSum=0.942;QD=6.90;ReadPosRankSum=0.616;SOR=4.169;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",23773723,".","T","G","0/1","0/0",90.87,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101492711|LOC101492711|transcript|gene-LOC101492711|pseudogene||n.-2360A>C|||||2360|,G|upstream_gene_variant|MODIFIER|LOC101493368|gene-LOC101493368|transcript|XM_004509906.1|protein_coding||c.-2021T>G|||||1089|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004509906.1-1|GENE_exon-XM_004509906.1-1|transcript|rna-XM_004509906.1|protein_coding||c.*1089A>C|||||1089|,G|intergenic_region|MODIFIER|LOC101492711-exon-XM_004509906.1-1|LOC101492711-GENE_exon-XM_004509906.1-1|intergenic_region|LOC101492711-GENE_exon-XM_004509906.1-1|||n.23773723T>G||||||;BaseQRankSum=-1.645e+00;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=41.73;MQRankSum=-1.645e+00;QD=15.15;ReadPosRankSum=1.96;SOR=0.693;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",23813855,".","C","T","0/0","0/1",154.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004509906.1-1-exon-XM_012718486.1-1|GENE_exon-XM_004509906.1-1-GENE_exon-XM_012718486.1-1|intergenic_region|GENE_exon-XM_004509906.1-1-GENE_exon-XM_012718486.1-1|||n.23813855C>T||||||;BaseQRankSum=1.93;ClippingRankSum=0.00;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=55.41;MQRankSum=-8.145e+00;QD=2.08;ReadPosRankSum=-4.890e-01;SOR=0.648;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",24035753,".","T","TAA","0/0","0/1",68.15,"QD2","AC=1;AF=0.250;AN=4;ANN=TAA|intergenic_region|MODIFIER|exon-XM_004509911.3-1-exon-XM_004509912.3-1|GENE_exon-XM_004509911.3-1-GENE_exon-XM_004509912.3-1|intergenic_region|GENE_exon-XM_004509911.3-1-GENE_exon-XM_004509912.3-1|||n.24035753_24035754insAA||||||;BaseQRankSum=1.73;ClippingRankSum=0.00;DP=132;ExcessHet=3.0103;FS=18.677;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=1.36;ReadPosRankSum=-3.580e+00;SOR=4.173;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",24636017,".","G","GATAATAATAATA","1/1","0/0",218.69,"mrd10;mrd15;mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=GATAATAATAATA|upstream_gene_variant|MODIFIER|LOC101499317|gene-LOC101499317|transcript|XM_012718498.2|protein_coding||c.-6463_-6462insATAATAATAATA|||||2759|WARNING_TRANSCRIPT_NO_START_CODON,GATAATAATAATA|upstream_gene_variant|MODIFIER|exon-XM_012718498.2-1|GENE_exon-XM_012718498.2-1|transcript|rna-XM_012718498.2|protein_coding||c.-2873_-2872insATAATAATAATA|||||2759|,GATAATAATAATA|intergenic_region|MODIFIER|exon-XM_027336863.1-1-exon-XM_012718498.2-1|GENE_exon-XM_027336863.1-1-GENE_exon-XM_012718498.2-1|intergenic_region|GENE_exon-XM_027336863.1-1-GENE_exon-XM_012718498.2-1|||n.24636017_24636018insATAATAATAATA||||||;DP=46;ExcessHet=1.5490;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=56.62;QD=29.64;SOR=1.179;SAL5=1;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",25075834,".","C","A","0/1","0/0",169.21,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101510858|gene-LOC101510858|transcript|XM_027336866.1|protein_coding||c.*9629C>A|||||2846|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_027336866.1-1|GENE_exon-XM_027336866.1-1|transcript|rna-XM_027336866.1|protein_coding||c.*2846C>A|||||2846|,A|intergenic_region|MODIFIER|exon-XM_027336866.1-1-exon-XM_004509946.1-1|GENE_exon-XM_027336866.1-1-GENE_exon-XM_004509946.1-1|intergenic_region|GENE_exon-XM_027336866.1-1-GENE_exon-XM_004509946.1-1|||n.25075834C>A||||||;BaseQRankSum=2.47;ClippingRankSum=0.00;DP=39;ExcessHet=3.0103;FS=8.860;MLEAC=1;MLEAF=0.250;MQ=52.88;MQRankSum=-3.986e+00;QD=7.05;ReadPosRankSum=-9.090e-01;SOR=3.126;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",25168460,".","A","C","0/1","0/0",284.87,"PASS","AC=1;AF=0.250;AN=4;ANN=C|5_prime_UTR_variant|MODIFIER|exon-XM_012718510.2-1|GENE_exon-XM_012718510.2-1|transcript|rna-XM_012718510.2|protein_coding|1/2|c.-178A>C|||||1350|,C|non_coding_transcript_exon_variant|MODIFIER|exon-XR_001144446.2-1|GENE_exon-XR_001144446.2-1|transcript|rna-XR_001144446.2|pseudogene|1/3|n.215A>C||||||,C|non_coding_transcript_variant|MODIFIER|LOC105852541|gene-LOC105852541|transcript|XM_012718510.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC105852541|gene-LOC105852541|transcript|XR_001144446.2|pseudogene||||||||;BaseQRankSum=-3.167e+00;ClippingRankSum=0.00;DP=158;ExcessHet=3.9794;FS=4.501;MLEAC=2;MLEAF=0.500;MQ=56.82;MQRankSum=-8.165e+00;QD=3.85;ReadPosRankSum=1.53;SOR=1.445;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021166.1",26270920,".","C","T","0/1","0/0",183.87,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004509963.2-1-LOC113787735|GENE_exon-XM_004509963.2-1-LOC113787735|intergenic_region|GENE_exon-XM_004509963.2-1-LOC113787735|||n.26270920C>T||||||;BaseQRankSum=3.02;ClippingRankSum=0.00;DP=59;ExcessHet=3.9794;FS=2.395;MLEAC=2;MLEAF=0.500;MQ=49.18;MQRankSum=-1.798e+00;QD=5.25;ReadPosRankSum=1.69;SOR=0.148;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021166.1",26718178,".","T","C","0/1","0/0",132.19,"map","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_027336871.1-1|GENE_exon-XM_027336871.1-1|transcript|rna-XM_027336871.1|protein_coding|4/4|c.730+24A>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC113787736|gene-LOC113787736|transcript|XM_027336871.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-2.442e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=20.073;MLEAC=1;MLEAF=0.250;MQ=56.35;MQRankSum=-7.032e+00;QD=2.59;ReadPosRankSum=1.88;SOR=4.168;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",27135591,".","A","G","0/1","0/0",99.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004509980.3-1-exon-XM_027337149.1-1|GENE_exon-XM_004509980.3-1-GENE_exon-XM_027337149.1-1|intergenic_region|GENE_exon-XM_004509980.3-1-GENE_exon-XM_027337149.1-1|||n.27135591A>G||||||;BaseQRankSum=-2.052e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=4.353;MLEAC=1;MLEAF=0.250;MQ=56.85;MQRankSum=-6.741e+00;QD=2.11;ReadPosRankSum=1.44;SOR=0.172;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",27648028,".","T","C,*","0/2","0/1",1407.44,"BQB;MQ40;SB60SNV","AC=1,1;AF=0.250,0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_012718528.2-1-exon-XM_012718527.2-1|GENE_exon-XM_012718528.2-1-GENE_exon-XM_012718527.2-1|intergenic_region|GENE_exon-XM_012718528.2-1-GENE_exon-XM_012718527.2-1|||n.27648028T>C||||||;BaseQRankSum=-5.813e+00;ClippingRankSum=0.00;DP=124;ExcessHet=4.7712;FS=92.634;MLEAC=1,1;MLEAF=0.250,0.250;MQ=35.11;MQRankSum=-3.347e+00;QD=11.44;ReadPosRankSum=-3.472e+00;SOR=2.958;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",27879969,".","T","A","0/1","0/0",22.23,"QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101504967|gene-LOC101504967|transcript|XM_004509997.3|protein_coding||c.-8304T>A|||||2515|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004509997.3-1|GENE_exon-XM_004509997.3-1|transcript|rna-XM_004509997.3|protein_coding||c.*2820A>T|||||2515|,A|intergenic_region|MODIFIER|exon-XM_004509995.3-1-exon-XM_004509997.3-1|GENE_exon-XM_004509995.3-1-GENE_exon-XM_004509997.3-1|intergenic_region|GENE_exon-XM_004509995.3-1-GENE_exon-XM_004509997.3-1|||n.27879969T>A||||||;BaseQRankSum=0.750;ClippingRankSum=0.00;DP=114;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.250;MQ=57.82;MQRankSum=-1.918e+00;QD=0.44;ReadPosRankSum=0.533;SOR=0.877;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",28006377,".","T","TTA","1/1","0/1",294.52,"mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=TTA|intergenic_region|MODIFIER|exon-XR_003474415.1-1-exon-XM_004510016.1-1|GENE_exon-XR_003474415.1-1-GENE_exon-XM_004510016.1-1|intergenic_region|GENE_exon-XR_003474415.1-1-GENE_exon-XM_004510016.1-1|||n.28006377_28006378insTA||||||;BaseQRankSum=1.60;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=46.18;MQRankSum=-2.300e-02;QD=18.41;ReadPosRankSum=0.282;SOR=0.458;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",28189950,".","C","CT","0/1","1/1",510.44,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=CT|intergenic_region|MODIFIER|exon-XM_027336875.1-1-exon-XM_027336948.1-1|GENE_exon-XM_027336875.1-1-GENE_exon-XM_027336948.1-1|intergenic_region|GENE_exon-XM_027336875.1-1-GENE_exon-XM_027336948.1-1|||n.28189950_28189951insT||||||;BaseQRankSum=-4.530e-01;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=22.71;MQRankSum=0.157;QD=24.31;ReadPosRankSum=1.29;SOR=3.816;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",29430049,".","A","C","0/0","0/1",18.25,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XR_003474189.1-1|GENE_exon-XR_003474189.1-1|transcript|rna-XR_003474189.1|pseudogene|4/5|n.615+3515T>G||||||,C|intron_variant|MODIFIER|exon-XR_003474188.1-1|GENE_exon-XR_003474188.1-1|transcript|rna-XR_003474188.1|pseudogene|4/4|n.612+3515T>G||||||,C|intron_variant|MODIFIER|exon-XR_003474187.1-1|GENE_exon-XR_003474187.1-1|transcript|rna-XR_003474187.1|pseudogene|4/4|n.612-2451T>G||||||,C|intragenic_variant|MODIFIER|LOC113787674|gene-LOC113787674|gene_variant|gene-LOC113787674|||n.29430049A>C||||||;BaseQRankSum=-4.170e-01;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=9.546;MLEAC=1;MLEAF=0.250;MQ=57.51;MQRankSum=-6.431e+00;QD=0.42;ReadPosRankSum=2.10;SOR=3.255;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",29656216,".","ATTAAAATCTCATCAATTAAAAAAGATATAAATAAATAATATATAATTACGTACCCTGAATTAT","A","0/1","0/0",48.15,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC113787563|gene-LOC113787563|transcript|XM_027336339.1|protein_coding||c.-1289_-1227delTTAAAATCTCATCAATTAAAAAAGATATAAATAAATAATATATAATTACGTACCCTGAATTAT|||||336|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|LOC113787582|gene-LOC113787582|transcript|XM_027336410.1|protein_coding||c.-2731_-2669delTTAAAATCTCATCAATTAAAAAAGATATAAATAAATAATATATAATTACGTACCCTGAATTAT|||||1515|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101501646|gene-LOC101501646|transcript|XM_004510140.3|protein_coding||c.*7403_*7465delTTAAAATCTCATCAATTAAAAAAGATATAAATAAATAATATATAATTACGTACCCTGAATTAT|||||3895|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004510140.3-1|GENE_exon-XM_004510140.3-1|transcript|rna-XM_004510140.3|protein_coding||c.*4238_*4300delTTAAAATCTCATCAATTAAAAAAGATATAAATAAATAATATATAATTACGTACCCTGAATTAT|||||3895|,A|downstream_gene_variant|MODIFIER|exon-XM_027336339.1-1|GENE_exon-XM_027336339.1-1|transcript|rna-XM_027336339.1|protein_coding||c.*403_*465delATAATTCAGGGTACGTAATTATATATTATTTATTTATATCTTTTTTAATTGATGAGATTTTAA|||||336|,A|downstream_gene_variant|MODIFIER|exon-XM_027336410.1-1|GENE_exon-XM_027336410.1-1|transcript|rna-XM_027336410.1|protein_coding||c.*1657_*1719delATAATTCAGGGTACGTAATTATATATTATTTATTTATATCTTTTTTAATTGATGAGATTTTAA|||||1515|,A|intergenic_region|MODIFIER|exon-XM_004510140.3-1-exon-XM_027336339.1-1|GENE_exon-XM_004510140.3-1-GENE_exon-XM_027336339.1-1|intergenic_region|GENE_exon-XM_004510140.3-1-GENE_exon-XM_027336339.1-1|||n.29656217_29656279delTTAAAATCTCATCAATTAAAAAAGATATAAATAAATAATATATAATTACGTACCCTGAATTAT||||||;BaseQRankSum=-1.190e-01;ClippingRankSum=0.00;DP=63;ExcessHet=3.0103;FS=41.098;MLEAC=1;MLEAF=0.250;MQ=36.84;MQRankSum=-2.690e-01;QD=1.55;ReadPosRankSum=-4.750e-01;SOR=3.584;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",30395746,".","T","C","0/1","0/0",717.87,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intron_variant|MODIFIER|exon-XM_004510233.2-1|GENE_exon-XM_004510233.2-1|transcript|rna-XM_004510233.2|protein_coding|1/3|c.181+403A>G||||||,C|non_coding_transcript_variant|MODIFIER|LOC101507020|gene-LOC101507020|transcript|XM_004510233.2|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.237e+00;ClippingRankSum=0.00;DP=156;ExcessHet=3.9794;FS=23.907;MLEAC=2;MLEAF=0.500;MQ=54.05;MQRankSum=-8.129e+00;QD=10.26;ReadPosRankSum=-3.480e+00;SOR=2.605;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",31071007,".","T","C","0/0","0/1",60.3,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004510245.3-1-exon-XM_004510249.3-1|GENE_exon-XM_004510245.3-1-GENE_exon-XM_004510249.3-1|intergenic_region|GENE_exon-XM_004510245.3-1-GENE_exon-XM_004510249.3-1|||n.31071007T>C||||||;BaseQRankSum=0.671;ClippingRankSum=0.00;DP=61;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.250;MQ=55.29;MQRankSum=-3.800e+00;QD=2.01;ReadPosRankSum=1.59;SOR=0.202;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",31998085,".","G","A","0/0","0/1",138.19,"MQ40;map","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101514848|gene-LOC101514848|transcript|XM_012718623.2|protein_coding||c.*4182G>A|||||3145|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012718623.2-1|GENE_exon-XM_012718623.2-1|transcript|rna-XM_012718623.2|protein_coding||c.*3192G>A|||||3145|,A|intergenic_region|MODIFIER|exon-XM_012718623.2-1-exon-XM_004510342.3-1|GENE_exon-XM_012718623.2-1-GENE_exon-XM_004510342.3-1|intergenic_region|GENE_exon-XM_012718623.2-1-GENE_exon-XM_004510342.3-1|||n.31998085G>A||||||;BaseQRankSum=-6.210e-01;ClippingRankSum=0.00;DP=106;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.250;MQ=37.69;MQRankSum=-3.560e+00;QD=3.21;ReadPosRankSum=-1.327e+00;SOR=0.980;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021166.1",32114692,".","G","T","0/1","0/0",154.44,"map","AC=1;AF=0.250;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_027336885.1-1|GENE_exon-XM_027336885.1-1|transcript|rna-XM_027336885.1|protein_coding|3/4|c.661C>A|p.Leu221Met|661/918|661/918|221/305||,T|upstream_gene_variant|MODIFIER|LOC101490444|gene-LOC101490444|transcript|XM_004510352.2|protein_coding||c.-9263G>T|||||4765|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101490444|gene-LOC101490444|transcript|XM_004510353.2|protein_coding||c.-9265G>T|||||4688|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004510353.2-1|GENE_exon-XM_004510353.2-1|transcript|rna-XM_004510353.2|protein_coding||c.*5129C>A|||||4688|,T|downstream_gene_variant|MODIFIER|exon-XM_004510352.2-1|GENE_exon-XM_004510352.2-1|transcript|rna-XM_004510352.2|protein_coding||c.*5129C>A|||||4765|,T|non_coding_transcript_variant|MODIFIER|LOC113787741|gene-LOC113787741|transcript|XM_027336885.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.67;ClippingRankSum=0.00;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=53.33;MQRankSum=-3.157e+00;QD=4.29;ReadPosRankSum=0.051;SOR=0.507;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",32694669,".","A","G","0/1","0/0",215.87,"PASS","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101494535|gene-LOC101494535|transcript|XM_004510445.1|protein_coding||c.-4291A>G|||||3081|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004510445.1-1|GENE_exon-XM_004510445.1-1|transcript|rna-XM_004510445.1|protein_coding||c.*3081T>C|||||3081|,G|intergenic_region|MODIFIER|exon-XM_004510392.3-1-exon-XM_004510445.1-1|GENE_exon-XM_004510392.3-1-GENE_exon-XM_004510445.1-1|intergenic_region|GENE_exon-XM_004510392.3-1-GENE_exon-XM_004510445.1-1|||n.32694669A>G||||||;BaseQRankSum=-2.625e+00;ClippingRankSum=0.00;DP=112;ExcessHet=3.9794;FS=27.145;MLEAC=2;MLEAF=0.500;MQ=56.49;MQRankSum=-6.501e+00;QD=3.27;ReadPosRankSum=-1.630e-01;SOR=3.759;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",33099125,".","C","A","0/0","0/1",46.41,"MQ40;QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC113787742|LOC113787742|transcript|gene-LOC113787742|pseudogene||n.-4206C>A|||||4206|,A|intergenic_region|MODIFIER|exon-XM_004510425.3-1-LOC113787742|GENE_exon-XM_004510425.3-1-LOC113787742|intergenic_region|GENE_exon-XM_004510425.3-1-LOC113787742|||n.33099125C>A||||||;BaseQRankSum=3.52;ClippingRankSum=0.00;DP=106;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.250;MQ=29.90;MQRankSum=1.33;QD=0.91;ReadPosRankSum=1.05;SOR=0.309;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",33434280,".","C","A","0/0","0/1",34.19,"QD2;map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_012718654.1-1-exon-XR_003474410.1-1|GENE_exon-XM_012718654.1-1-GENE_exon-XR_003474410.1-1|intergenic_region|GENE_exon-XM_012718654.1-1-GENE_exon-XR_003474410.1-1|||n.33434280C>A||||||;BaseQRankSum=2.08;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=6.567;MLEAC=1;MLEAF=0.250;MQ=51.07;MQRankSum=-2.031e+00;QD=0.70;ReadPosRankSum=0.679;SOR=0.132;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",33651733,".","C","T","1/1","0/1",1695.25,"MQ40;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|exon-NM_001364742.1-1-exon-XR_003474003.1-1|GENE_exon-NM_001364742.1-1-GENE_exon-XR_003474003.1-1|intergenic_region|GENE_exon-NM_001364742.1-1-GENE_exon-XR_003474003.1-1|||n.33651733C>T||||||;DP=91;ExcessHet=3.0103;FS=1.227;MLEAC=4;MLEAF=1.00;MQ=37.96;QD=36.14;SOR=0.949;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",33958868,".","G","T","0/0","0/1",168.19,"map","AC=1;AF=0.250;AN=4;ANN=T|non_coding_transcript_exon_variant|MODIFIER|LOC101494113|LOC101494113|transcript|gene-LOC101494113|pseudogene|5/5|n.2170G>T||||||;BaseQRankSum=3.10;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=4.962;MLEAC=1;MLEAF=0.250;MQ=53.69;MQRankSum=-3.460e-01;QD=4.31;ReadPosRankSum=0.073;SOR=0.100;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",34405156,".","G","C","0/0","0/1",75.19,"MQ40;QD2","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101505611|gene-LOC101505611|transcript|XM_004510561.3|protein_coding||c.-7772G>C|||||2863|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004510561.3-1|GENE_exon-XM_004510561.3-1|transcript|rna-XM_004510561.3|protein_coding||c.-3626G>C|||||2863|,C|intergenic_region|MODIFIER|exon-XM_027336547.1-1-exon-XM_004510561.3-1|GENE_exon-XM_027336547.1-1-GENE_exon-XM_004510561.3-1|intergenic_region|GENE_exon-XM_027336547.1-1-GENE_exon-XM_004510561.3-1|||n.34405156G>C||||||;BaseQRankSum=0.548;ClippingRankSum=0.00;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=39.99;MQRankSum=0.204;QD=1.98;ReadPosRankSum=-8.670e-01;SOR=0.965;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",34791805,".","T","C","0/1","0/0",866.87,"BQB","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_027336549.1-1-LOC101499323|GENE_exon-XM_027336549.1-1-LOC101499323|intergenic_region|GENE_exon-XM_027336549.1-1-LOC101499323|||n.34791805T>C||||||;BaseQRankSum=-4.099e+00;ClippingRankSum=0.00;DP=155;ExcessHet=3.9794;FS=4.759;MLEAC=2;MLEAF=0.500;MQ=54.17;MQRankSum=-8.185e+00;QD=10.70;ReadPosRankSum=-2.660e-01;SOR=1.292;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",35389451,".","G","A","0/0","0/1",15.32,"QD2;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027336709.1-1-exon-XM_004510630.3-1|GENE_exon-XM_027336709.1-1-GENE_exon-XM_004510630.3-1|intergenic_region|GENE_exon-XM_027336709.1-1-GENE_exon-XM_004510630.3-1|||n.35389451G>A||||||;BaseQRankSum=1.95;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=40.12;MQRankSum=-2.550e-01;QD=1.09;ReadPosRankSum=0.00;SOR=0.223;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",35954770,".","C","T","0/1","0/0",117.87,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004510674.3-1-exon-XM_004510675.3-1|GENE_exon-XM_004510674.3-1-GENE_exon-XM_004510675.3-1|intergenic_region|GENE_exon-XM_004510674.3-1-GENE_exon-XM_004510675.3-1|||n.35954770C>T||||||;BaseQRankSum=1.14;ClippingRankSum=0.00;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=25.31;MQRankSum=-1.701e+00;QD=9.82;ReadPosRankSum=1.52;SOR=1.022;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",36625693,".","A","C","0/0","0/1",60.19,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_012718720.2-1-exon-XM_012718714.2-1|GENE_exon-XM_012718720.2-1-GENE_exon-XM_012718714.2-1|intergenic_region|GENE_exon-XM_012718720.2-1-GENE_exon-XM_012718714.2-1|||n.36625693A>C||||||;BaseQRankSum=-1.235e+00;ClippingRankSum=0.00;DP=32;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.250;MQ=56.19;MQRankSum=-3.618e+00;QD=4.01;ReadPosRankSum=1.55;SOR=0.061;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",37109266,".","T","G","0/0","0/1",138.19,"map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004510763.3-1-exon-XM_004510764.3-1|GENE_exon-XM_004510763.3-1-GENE_exon-XM_004510764.3-1|intergenic_region|GENE_exon-XM_004510763.3-1-GENE_exon-XM_004510764.3-1|||n.37109266T>G||||||;BaseQRankSum=-3.062e+00;ClippingRankSum=0.00;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=50.06;MQRankSum=-3.439e+00;QD=2.82;ReadPosRankSum=1.10;SOR=0.627;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",37314244,".","C","T","0/0","0/1",45.21,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012718725.2-1-exon-XR_003474437.1-1|GENE_exon-XM_012718725.2-1-GENE_exon-XR_003474437.1-1|intergenic_region|GENE_exon-XM_012718725.2-1-GENE_exon-XR_003474437.1-1|||n.37314244C>T||||||;BaseQRankSum=-9.000e-02;ClippingRankSum=0.00;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=60.00;MQRankSum=0.00;QD=5.02;ReadPosRankSum=0.241;SOR=0.527;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",37460061,".","C","T","0/0","0/1",282.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_012718725.2-1-exon-XR_003474437.1-1|GENE_exon-XM_012718725.2-1-GENE_exon-XR_003474437.1-1|intergenic_region|GENE_exon-XM_012718725.2-1-GENE_exon-XR_003474437.1-1|||n.37460061C>T||||||;BaseQRankSum=3.61;ClippingRankSum=0.00;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=54.45;MQRankSum=-6.393e+00;QD=6.56;ReadPosRankSum=0.104;SOR=0.536;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",37569440,".","A","G","0/0","0/1",28.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003474437.1-1-exon-XR_003473952.1-1|GENE_exon-XR_003474437.1-1-GENE_exon-XR_003473952.1-1|intergenic_region|GENE_exon-XR_003474437.1-1-GENE_exon-XR_003473952.1-1|||n.37569440A>G||||||;BaseQRankSum=-2.988e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=56.24;MQRankSum=-7.824e+00;QD=0.45;ReadPosRankSum=-1.574e+00;SOR=0.527;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021166.1",37895771,".","C","T","0/1","0/0",108.19,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|TRNAG-GCC-exon-XM_004510797.3-1|gene-TRNAG-GCC-25-GENE_exon-XM_004510797.3-1|intergenic_region|gene-TRNAG-GCC-25-GENE_exon-XM_004510797.3-1|||n.37895771C>T||||||;BaseQRankSum=1.22;ClippingRankSum=0.00;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=47.06;MQRankSum=-1.818e+00;QD=7.73;ReadPosRankSum=0.142;SOR=0.693;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",37993092,".","G","A","1/1","0/1",2508.3,"BQB;map","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101506251|gene-LOC101506251|transcript|XM_012718760.2|protein_coding||c.-9309G>A|||||3141|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_012718760.2-1|GENE_exon-XM_012718760.2-1|transcript|rna-XM_012718760.2|protein_coding||c.*3417C>T|||||3141|,A|intergenic_region|MODIFIER|exon-XM_012718757.2-1-exon-XM_012718760.2-1|GENE_exon-XM_012718757.2-1-GENE_exon-XM_012718760.2-1|intergenic_region|GENE_exon-XM_012718757.2-1-GENE_exon-XM_012718760.2-1|||n.37993092G>A||||||;BaseQRankSum=5.83;ClippingRankSum=0.00;DP=156;ExcessHet=3.0103;FS=0.723;MLEAC=3;MLEAF=0.750;MQ=43.48;MQRankSum=-7.670e-01;QD=16.18;ReadPosRankSum=1.45;SOR=0.814;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",38296695,".","C","A","0/0","0/1",158.19,"map","AC=1;AF=0.250;AN=4;ANN=A|intron_variant|MODIFIER|exon-XR_001144501.2-1|GENE_exon-XR_001144501.2-1|transcript|rna-XR_001144501.2|pseudogene|2/3|n.792-4843G>T||||||,A|intron_variant|MODIFIER|exon-XR_003474001.1-1|GENE_exon-XR_003474001.1-1|transcript|rna-XR_003474001.1|pseudogene|2/3|n.792-4778G>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101513656|gene-LOC101513656|transcript|XR_001144501.2|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101513656|gene-LOC101513656|transcript|XR_003474001.1|pseudogene||||||||;BaseQRankSum=3.14;ClippingRankSum=0.00;DP=100;ExcessHet=3.0103;FS=31.890;MLEAC=1;MLEAF=0.250;MQ=50.61;MQRankSum=-2.042e+00;QD=3.37;ReadPosRankSum=0.330;SOR=4.398;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",38556125,".","A","ATTTTAATAATTGGAAGTAAC","0/1","0/0",329.15,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=ATTTTAATAATTGGAAGTAAC|downstream_gene_variant|MODIFIER|LOC101498461|gene-LOC101498461|transcript|XM_004510857.3|protein_coding||c.*5488_*5489insTTTTAATAATTGGAAGTAAC|||||3932|WARNING_TRANSCRIPT_NO_START_CODON,ATTTTAATAATTGGAAGTAAC|downstream_gene_variant|MODIFIER|exon-XM_004510857.3-1|GENE_exon-XM_004510857.3-1|transcript|rna-XM_004510857.3|protein_coding||c.*4070_*4071insTTTTAATAATTGGAAGTAAC|||||3932|,ATTTTAATAATTGGAAGTAAC|intergenic_region|MODIFIER|exon-XM_004510857.3-1-exon-XM_012718746.2-1|GENE_exon-XM_004510857.3-1-GENE_exon-XM_012718746.2-1|intergenic_region|GENE_exon-XM_004510857.3-1-GENE_exon-XM_012718746.2-1|||n.38556125_38556126insTTTTAATAATTGGAAGTAAC||||||;BaseQRankSum=-1.855e+00;ClippingRankSum=0.00;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=49.33;MQRankSum=-9.980e-01;QD=27.43;ReadPosRankSum=-1.308e+00;SOR=1.426;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",38999243,".","G","A","0/0","0/1",16.54,"QD2;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027336901.1-1-exon-XM_004510866.1-1|GENE_exon-XM_027336901.1-1-GENE_exon-XM_004510866.1-1|intergenic_region|GENE_exon-XM_027336901.1-1-GENE_exon-XM_004510866.1-1|||n.38999243G>A||||||;BaseQRankSum=2.59;ClippingRankSum=0.00;DP=40;ExcessHet=3.0103;FS=12.311;MLEAC=1;MLEAF=0.250;MQ=56.79;MQRankSum=-2.975e+00;QD=0.92;ReadPosRankSum=1.56;SOR=0.027;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",39074694,".","G","T","0/0","0/1",201.3,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004510849.3-1-exon-XM_004510867.3-1|GENE_exon-XM_004510849.3-1-GENE_exon-XM_004510867.3-1|intergenic_region|GENE_exon-XM_004510849.3-1-GENE_exon-XM_004510867.3-1|||n.39074694G>T||||||;BaseQRankSum=3.29;ClippingRankSum=0.00;DP=158;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.250;MQ=57.18;MQRankSum=-6.305e+00;QD=2.31;ReadPosRankSum=-2.642e+00;SOR=1.179;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",39589543,".","T","TG","0/1","0/0",190.15,"map","AC=1;AF=0.250;AN=4;ANN=TG|upstream_gene_variant|MODIFIER|LOC105852608|gene-LOC105852608|transcript|XM_012718769.1|protein_coding||c.-3925_-3924insG|||||1994|WARNING_TRANSCRIPT_NO_START_CODON,TG|upstream_gene_variant|MODIFIER|exon-XM_012718769.1-1|GENE_exon-XM_012718769.1-1|transcript|rna-XM_012718769.1|protein_coding||c.-1995_-1994insG|||||1994|,TG|downstream_gene_variant|MODIFIER|LOC105852607|gene-LOC105852607|transcript|XM_012718768.1|protein_coding||c.*3746_*3747insG|||||549|WARNING_TRANSCRIPT_NO_START_CODON,TG|downstream_gene_variant|MODIFIER|exon-XM_012718768.1-1|GENE_exon-XM_012718768.1-1|transcript|rna-XM_012718768.1|protein_coding||c.*548_*549insG|||||549|,TG|intergenic_region|MODIFIER|exon-XM_012718768.1-1-exon-XM_012718769.1-1|GENE_exon-XM_012718768.1-1-GENE_exon-XM_012718769.1-1|intergenic_region|GENE_exon-XM_012718768.1-1-GENE_exon-XM_012718769.1-1|||n.39589543_39589544insG||||||;BaseQRankSum=-2.593e+00;ClippingRankSum=0.00;DP=127;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.250;MQ=59.36;MQRankSum=-5.735e+00;QD=2.93;ReadPosRankSum=-1.456e+00;SOR=0.838;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021166.1",40277957,".","G","A","0/0","0/1",191.47,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101499537|gene-LOC101499537|transcript|XM_004510929.3|protein_coding||c.-12854G>A|||||4687|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004510929.3-1|GENE_exon-XM_004510929.3-1|transcript|rna-XM_004510929.3|protein_coding||c.*4978C>T|||||4687|,A|intergenic_region|MODIFIER|exon-XM_004510924.3-1-exon-XM_004510929.3-1|GENE_exon-XM_004510924.3-1-GENE_exon-XM_004510929.3-1|intergenic_region|GENE_exon-XM_004510924.3-1-GENE_exon-XM_004510929.3-1|||n.40277957G>A||||||;BaseQRankSum=2.65;ClippingRankSum=0.00;DP=124;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.250;MQ=52.72;MQRankSum=-2.788e+00;QD=3.19;ReadPosRankSum=-5.100e-01;SOR=0.986;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021166.1",41169023,".","T","A","0/0","0/1",77.04,"MQ40;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC113787697-LOC101499124|LOC113787697-LOC101499124|intergenic_region|LOC113787697-LOC101499124|||n.41169023T>A||||||;BaseQRankSum=-1.151e+00;ClippingRankSum=0.00;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=37.27;MQRankSum=-2.064e+00;QD=3.08;ReadPosRankSum=-4.260e-01;SOR=0.346;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",41309929,".","T","TG","0/1","0/0",176.37,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=TG|upstream_gene_variant|MODIFIER|exon-XM_004511003.1-1|GENE_exon-XM_004511003.1-1|transcript|rna-XM_004511003.1|protein_coding||c.-4279_-4278insC|||||4279|,TG|downstream_gene_variant|MODIFIER|LOC101499445|gene-LOC101499445|transcript|XM_004511003.1|protein_coding||c.*4685_*4686insG|||||4279|WARNING_TRANSCRIPT_NO_START_CODON,TG|intergenic_region|MODIFIER|exon-XM_004511003.1-1-exon-XM_012718790.2-1|GENE_exon-XM_004511003.1-1-GENE_exon-XM_012718790.2-1|intergenic_region|GENE_exon-XM_004511003.1-1-GENE_exon-XM_012718790.2-1|||n.41309929_41309930insG||||||;BaseQRankSum=-4.680e-01;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=33.092;MLEAC=1;MLEAF=0.250;MQ=49.73;MQRankSum=-4.370e+00;QD=5.34;ReadPosRankSum=2.31;SOR=4.972;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",41598977,".","GT","G","0/0","0/1",43.15,"QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004510973.3-1-exon-XM_012718798.1-1|GENE_exon-XM_004510973.3-1-GENE_exon-XM_012718798.1-1|intergenic_region|GENE_exon-XM_004510973.3-1-GENE_exon-XM_012718798.1-1|||n.41598978delT||||||;BaseQRankSum=-2.725e+00;ClippingRankSum=0.00;DP=125;ExcessHet=3.0103;FS=7.786;MLEAC=1;MLEAF=0.250;MQ=52.96;MQRankSum=-5.488e+00;QD=0.94;ReadPosRankSum=-1.362e+00;SOR=2.902;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021166.1",42399185,".","T","G","0/0","0/1",188.87,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004511007.2-1-exon-XR_001144507.2-1|GENE_exon-XM_004511007.2-1-GENE_exon-XR_001144507.2-1|intergenic_region|GENE_exon-XM_004511007.2-1-GENE_exon-XR_001144507.2-1|||n.42399185T>G||||||;BaseQRankSum=-2.357e+00;ClippingRankSum=0.00;DP=138;ExcessHet=3.9794;FS=10.655;MLEAC=2;MLEAF=0.500;MQ=57.56;MQRankSum=-8.620e+00;QD=2.49;ReadPosRankSum=1.22;SOR=2.272;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",42459781,".","G","A","0/0","0/1",176.47,"map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004511007.2-1-exon-XR_001144507.2-1|GENE_exon-XM_004511007.2-1-GENE_exon-XR_001144507.2-1|intergenic_region|GENE_exon-XM_004511007.2-1-GENE_exon-XR_001144507.2-1|||n.42459781G>A||||||;BaseQRankSum=1.68;ClippingRankSum=0.00;DP=107;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.250;MQ=54.54;MQRankSum=0.012;QD=3.10;ReadPosRankSum=0.467;SOR=0.388;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021166.1",42528008,".","C","T","0/1","0/0",133.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|non_coding_transcript_exon_variant|MODIFIER|LOC101506481|LOC101506481|transcript|gene-LOC101506481|pseudogene|1/2|n.5C>T||||||;BaseQRankSum=5.40;ClippingRankSum=0.00;DP=245;ExcessHet=3.0103;FS=23.564;MLEAC=1;MLEAF=0.250;MQ=44.18;MQRankSum=-1.340e+00;QD=0.97;ReadPosRankSum=2.07;SOR=4.122;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",42870569,".","G","GTTT","0/0","0/1",111.15,"PASS","AC=1;AF=0.250;AN=4;ANN=GTTT|intergenic_region|MODIFIER|exon-XM_004511029.3-1-exon-XM_004511031.3-1|GENE_exon-XM_004511029.3-1-GENE_exon-XM_004511031.3-1|intergenic_region|GENE_exon-XM_004511029.3-1-GENE_exon-XM_004511031.3-1|||n.42870569_42870570insTTT||||||;BaseQRankSum=-2.172e+00;ClippingRankSum=0.00;DP=86;ExcessHet=3.0103;FS=9.834;MLEAC=1;MLEAF=0.250;MQ=57.45;MQRankSum=1.11;QD=3.27;ReadPosRankSum=-3.580e+00;SOR=2.574;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",43434587,".","C","T","0/1","0/0",168.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004511066.1-1|GENE_exon-XM_004511066.1-1|transcript|rna-XM_004511066.1|protein_coding||c.-686G>A|||||686|,T|downstream_gene_variant|MODIFIER|LOC101500169|gene-LOC101500169|transcript|XM_004511066.1|protein_coding||c.*1636C>T|||||686|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004511066.1-1-exon-XM_004511056.3-1|GENE_exon-XM_004511066.1-1-GENE_exon-XM_004511056.3-1|intergenic_region|GENE_exon-XM_004511066.1-1-GENE_exon-XM_004511056.3-1|||n.43434587C>T||||||;BaseQRankSum=1.80;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=5.575;MLEAC=1;MLEAF=0.250;MQ=52.88;MQRankSum=-3.999e+00;QD=7.01;ReadPosRankSum=-2.637e+00;SOR=2.722;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",43483165,".","A","G","0/1","0/0",47.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004511066.1-1-exon-XM_004511056.3-1|GENE_exon-XM_004511066.1-1-GENE_exon-XM_004511056.3-1|intergenic_region|GENE_exon-XM_004511066.1-1-GENE_exon-XM_004511056.3-1|||n.43483165A>G||||||;BaseQRankSum=-4.310e-01;ClippingRankSum=0.00;DP=65;ExcessHet=3.0103;FS=15.735;MLEAC=1;MLEAF=0.250;MQ=57.46;MQRankSum=-4.764e+00;QD=1.52;ReadPosRankSum=-1.003e+00;SOR=2.781;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",43717772,".","T","C","0/0","0/1",11.83,"QD2;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XR_003474399.1-1|GENE_exon-XR_003474399.1-1|transcript|rna-XR_003474399.1|pseudogene||n.-1400A>G|||||1400|,C|downstream_gene_variant|MODIFIER|LOC113787877|gene-LOC113787877|transcript|XR_003474399.1|snRNA||n.*1595T>C|||||1400|,C|intergenic_region|MODIFIER|exon-XR_003474399.1-1-exon-XM_004511068.3-1|GENE_exon-XR_003474399.1-1-GENE_exon-XM_004511068.3-1|intergenic_region|GENE_exon-XR_003474399.1-1-GENE_exon-XM_004511068.3-1|||n.43717772T>C||||||;BaseQRankSum=-1.732e+00;ClippingRankSum=0.00;DP=14;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.250;MQ=44.12;MQRankSum=-6.740e-01;QD=1.18;ReadPosRankSum=-1.732e+00;SOR=2.419;SAL5=1;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021166.1",43923442,".","C","T","0/1","0/0",78.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=T|intron_variant|MODIFIER|exon-XM_027336537.1-1|GENE_exon-XM_027336537.1-1|transcript|rna-XM_027336537.1|protein_coding|2/2|c.95-3985G>A||||||,T|intron_variant|MODIFIER|exon-XR_003474131.1-1|GENE_exon-XR_003474131.1-1|transcript|rna-XR_003474131.1|pseudogene|3/3|n.1334-3985G>A||||||,T|non_coding_transcript_variant|MODIFIER|LOC113787621|gene-LOC113787621|transcript|XM_027336537.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC113787621|gene-LOC113787621|transcript|XR_003474131.1|pseudogene||||||||;BaseQRankSum=1.47;ClippingRankSum=0.00;DP=81;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.250;MQ=41.62;MQRankSum=-1.865e+00;QD=2.90;ReadPosRankSum=1.20;SOR=0.914;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
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["NC_021166.1",45373944,".","A","G","1/1","0/1",299.24,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101491727|gene-LOC101491727|transcript|XM_027336308.1|protein_coding||c.*7936A>G|||||4946|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_027336308.1-1|GENE_exon-XM_027336308.1-1|transcript|rna-XM_027336308.1|protein_coding||c.*5292A>G|||||4946|,G|downstream_gene_variant|MODIFIER|exon-XM_027336309.1-1|GENE_exon-XM_027336309.1-1|transcript|rna-XM_027336309.1|protein_coding||c.*5292A>G|||||4946|,G|downstream_gene_variant|MODIFIER|LOC101491727|gene-LOC101491727|transcript|XM_027336309.1|protein_coding||c.*7936A>G|||||4946|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_027336308.1-1-LOC101492046|GENE_exon-XM_027336308.1-1-LOC101492046|intergenic_region|GENE_exon-XM_027336308.1-1-LOC101492046|||n.45373944A>G||||||;BaseQRankSum=-2.878e+00;ClippingRankSum=0.00;DP=22;ExcessHet=3.0103;FS=13.236;MLEAC=3;MLEAF=0.750;MQ=34.36;MQRankSum=-3.481e+00;QD=14.25;ReadPosRankSum=0.454;SOR=1.934;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021166.1",46655794,".","C","T","0/0","0/1",24.88,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027336922.1-1-exon-XM_004511149.3-1|GENE_exon-XM_027336922.1-1-GENE_exon-XM_004511149.3-1|intergenic_region|GENE_exon-XM_027336922.1-1-GENE_exon-XM_004511149.3-1|||n.46655794C>T||||||;BaseQRankSum=0.411;ClippingRankSum=0.00;DP=134;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=59.81;MQRankSum=-2.366e+00;QD=0.36;ReadPosRankSum=1.34;SOR=0.648;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",47187760,".","C","T","0/1","0/0",83.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027336924.1-1-exon-XM_004511167.3-1|GENE_exon-XM_027336924.1-1-GENE_exon-XM_004511167.3-1|intergenic_region|GENE_exon-XM_027336924.1-1-GENE_exon-XM_004511167.3-1|||n.47187760C>T||||||;BaseQRankSum=4.76;ClippingRankSum=0.00;DP=170;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.250;MQ=56.41;MQRankSum=-5.539e+00;QD=1.03;ReadPosRankSum=0.178;SOR=1.136;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",47430174,".","A","T","0/1","0/0",47.19,"QD2","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|exon-XR_003474354.1-1|GENE_exon-XR_003474354.1-1|transcript|rna-XR_003474354.1|pseudogene||n.*657T>A|||||657|,T|intergenic_region|MODIFIER|exon-XM_027336927.1-1-exon-XR_003474354.1-1|GENE_exon-XM_027336927.1-1-GENE_exon-XR_003474354.1-1|intergenic_region|GENE_exon-XM_027336927.1-1-GENE_exon-XR_003474354.1-1|||n.47430174A>T||||||;BaseQRankSum=2.25;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=13.409;MLEAC=1;MLEAF=0.250;MQ=55.60;MQRankSum=-7.089e+00;QD=0.91;ReadPosRankSum=-9.700e-02;SOR=3.448;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",47646833,".","G","T","0/1","0/0",69.87,"QD2;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004511187.2-1-exon-XM_027337111.1-1|GENE_exon-XM_004511187.2-1-GENE_exon-XM_027337111.1-1|intergenic_region|GENE_exon-XM_004511187.2-1-GENE_exon-XM_027337111.1-1|||n.47646833G>T||||||;BaseQRankSum=3.35;ClippingRankSum=0.00;DP=173;ExcessHet=3.9794;FS=2.462;MLEAC=2;MLEAF=0.500;MQ=55.43;MQRankSum=-7.192e+00;QD=0.81;ReadPosRankSum=0.451;SOR=0.900;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",47890673,".","C","T","0/0","0/1",12.44,"QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004511190.3-1-exon-XM_004511197.1-1|GENE_exon-XM_004511190.3-1-GENE_exon-XM_004511197.1-1|intergenic_region|GENE_exon-XM_004511190.3-1-GENE_exon-XM_004511197.1-1|||n.47890673C>T||||||;BaseQRankSum=2.36;ClippingRankSum=0.00;DP=36;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.250;MQ=51.65;MQRankSum=-1.451e+00;QD=0.78;ReadPosRankSum=0.939;SOR=2.262;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",48338319,".","T","TGATCTACGCATCGGTAAACAATCCGAAGACGATCAATTTCATTTCTATAGATCTACGCATCGGTAACCAATCCGAAGACGATTATTTTTCATTTCTATA","0/0","0/1",102.15,"QD2","AC=1;AF=0.250;AN=4;ANN=TGATCTACGCATCGGTAAACAATCCGAAGACGATCAATTTCATTTCTATAGATCTACGCATCGGTAACCAATCCGAAGACGATTATTTTTCATTTCTATA|intergenic_region|MODIFIER|exon-XM_004511195.3-1-exon-XM_027336629.1-1|GENE_exon-XM_004511195.3-1-GENE_exon-XM_027336629.1-1|intergenic_region|GENE_exon-XM_004511195.3-1-GENE_exon-XM_027336629.1-1|||n.48338319_48338320insGATCTACGCATCGGTAAACAATCCGAAGACGATCAATTTCATTTCTATAGATCTACGCATCGGTAACCAATCCGAAGACGATTATTTTTCATTTCTATA||||||;BaseQRankSum=-5.600e-01;ClippingRankSum=0.00;DP=172;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.250;MQ=54.76;MQRankSum=-2.156e+00;QD=1.34;ReadPosRankSum=-4.903e+00;SOR=1.085;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021166.1",48537145,".","C","T","0/1","0/0",151.19,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004511204.2-1-exon-XM_027337142.1-1|GENE_exon-XM_004511204.2-1-GENE_exon-XM_027337142.1-1|intergenic_region|GENE_exon-XM_004511204.2-1-GENE_exon-XM_027337142.1-1|||n.48537145C>T||||||;BaseQRankSum=3.74;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.250;MQ=23.99;MQRankSum=-2.371e+00;QD=7.96;ReadPosRankSum=-1.274e+00;SOR=0.124;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",48713589,".","T","G","0/0","0/1",10.29,"QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|exon-XM_027336928.1-1|GENE_exon-XM_027336928.1-1|transcript|rna-XM_027336928.1|protein_coding||c.-3139A>C|||||3139|,G|downstream_gene_variant|MODIFIER|LOC101508099|gene-LOC101508099|transcript|XM_027336928.1|protein_coding||c.*8048T>G|||||3139|WARNING_TRANSCRIPT_NO_START_CODON,G|intergenic_region|MODIFIER|exon-XM_027336928.1-1-exon-XM_027337150.1-1|GENE_exon-XM_027336928.1-1-GENE_exon-XM_027337150.1-1|intergenic_region|GENE_exon-XM_027336928.1-1-GENE_exon-XM_027337150.1-1|||n.48713589T>G||||||;BaseQRankSum=1.39;ClippingRankSum=0.00;DP=40;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=55.97;MQRankSum=-3.859e+00;QD=0.61;ReadPosRankSum=-2.240e-01;SOR=0.616;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021166.1",48849458,".","G","T,C","1/2","1/1",585.21,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3,1;AF=0.750,0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027336930.1-1|GENE_exon-XM_027336930.1-1|transcript|rna-XM_027336930.1|protein_coding||c.-2134C>A|||||2134|,C|upstream_gene_variant|MODIFIER|exon-XM_027336930.1-1|GENE_exon-XM_027336930.1-1|transcript|rna-XM_027336930.1|protein_coding||c.-2134C>G|||||2134|,T|downstream_gene_variant|MODIFIER|LOC101510657|gene-LOC101510657|transcript|XM_027336930.1|protein_coding||c.*5221G>T|||||2134|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101510657|gene-LOC101510657|transcript|XM_027336930.1|protein_coding||c.*5221G>C|||||2134|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_027336930.1-1-exon-XM_027336931.1-1|GENE_exon-XM_027336930.1-1-GENE_exon-XM_027336931.1-1|intergenic_region|GENE_exon-XM_027336930.1-1-GENE_exon-XM_027336931.1-1|||n.48849458G>T||||||,C|intergenic_region|MODIFIER|exon-XM_027336930.1-1-exon-XM_027336931.1-1|GENE_exon-XM_027336930.1-1-GENE_exon-XM_027336931.1-1|intergenic_region|GENE_exon-XM_027336930.1-1-GENE_exon-XM_027336931.1-1|||n.48849458G>C||||||;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=3,1;MLEAF=0.750,0.250;MQ=39.92;QD=24.38;SOR=6.439;SAL5=2;SAL10=1;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021167.1",101455,".","T","A","1/1","0/0",640.42,"mrd20;mrd30","AC=2;AF=0.500;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004511221.3-1|GENE_exon-XM_004511221.3-1|transcript|rna-XM_004511221.3|protein_coding|1/7|c.-9+62A>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101513443|gene-LOC101513443|transcript|XM_004511221.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=47;ExcessHet=0.7918;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.27;QD=27.48;SOR=1.112;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",760253,".","A","T","0/1","0/0",303.87,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101491729|gene-LOC101491729|transcript|NM_001365050.1|protein_coding||c.-5552A>T|||||3392|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-NM_001365050.1-1|GENE_exon-NM_001365050.1-1|transcript|rna-NM_001365050.1|protein_coding||c.-3469A>T|||||3392|,T|intergenic_region|MODIFIER|exon-XM_004511331.3-1-exon-NM_001365050.1-1|GENE_exon-XM_004511331.3-1-GENE_exon-NM_001365050.1-1|intergenic_region|GENE_exon-XM_004511331.3-1-GENE_exon-NM_001365050.1-1|||n.760253A>T||||||;BaseQRankSum=-1.282e+00;ClippingRankSum=0.00;DP=28;ExcessHet=3.9794;FS=6.990;MLEAC=2;MLEAF=0.500;MQ=47.12;MQRankSum=-2.287e+00;QD=30.39;ReadPosRankSum=-3.700e-01;SOR=4.407;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",1881320,".","T","C","0/1","1/1",2006.19,"BQB","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004511541.3-1|GENE_exon-XM_004511541.3-1|transcript|rna-XM_004511541.3|protein_coding||c.-948A>G|||||587|,C|upstream_gene_variant|MODIFIER|exon-XM_027337443.1-1|GENE_exon-XM_027337443.1-1|transcript|rna-XM_027337443.1|protein_coding||c.-948A>G|||||584|,C|upstream_gene_variant|MODIFIER|LOC101503352|gene-LOC101503352|transcript|XM_012719007.2|protein_coding||c.-7706T>C|||||1530|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|LOC101503352|gene-LOC101503352|transcript|XM_012719008.2|protein_coding||c.-7704T>C|||||1530|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101503028|gene-LOC101503028|transcript|XM_004511541.3|protein_coding||c.*6036T>C|||||587|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_012719008.2-1|GENE_exon-XM_012719008.2-1|transcript|rna-XM_012719008.2|protein_coding||c.*2072A>G|||||1530|,C|downstream_gene_variant|MODIFIER|exon-XM_012719007.2-1|GENE_exon-XM_012719007.2-1|transcript|rna-XM_012719007.2|protein_coding||c.*2072A>G|||||1530|,C|downstream_gene_variant|MODIFIER|LOC101503028|gene-LOC101503028|transcript|XM_027337443.1|protein_coding||c.*6036T>C|||||584|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_027337443.1-1-exon-XM_012719008.2-1|GENE_exon-XM_027337443.1-1-GENE_exon-XM_012719008.2-1|intergenic_region|GENE_exon-XM_027337443.1-1-GENE_exon-XM_012719008.2-1|||n.1881320T>C||||||;BaseQRankSum=-4.645e+00;ClippingRankSum=0.00;DP=132;ExcessHet=3.0103;FS=3.762;MLEAC=3;MLEAF=0.750;MQ=44.62;MQRankSum=0.00;QD=15.67;ReadPosRankSum=-5.600e-01;SOR=0.770;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021167.1",2296591,".","A","AT","0/1","1/1",2177.19,"PASS","AC=3;AF=0.750;AN=4;ANN=AT|upstream_gene_variant|MODIFIER|exon-XM_004511611.3-1|GENE_exon-XM_004511611.3-1|transcript|rna-XM_004511611.3|protein_coding||c.-2317_-2316insA|||||2112|,AT|downstream_gene_variant|MODIFIER|LOC101497253|gene-LOC101497253|transcript|XM_004511611.3|protein_coding||c.*3456_*3457insT|||||2112|WARNING_TRANSCRIPT_NO_START_CODON,AT|intergenic_region|MODIFIER|exon-XM_004511611.3-1-exon-XM_004511613.3-1|GENE_exon-XM_004511611.3-1-GENE_exon-XM_004511613.3-1|intergenic_region|GENE_exon-XM_004511611.3-1-GENE_exon-XM_004511613.3-1|||n.2296591_2296592insT||||||;BaseQRankSum=0.391;ClippingRankSum=0.00;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=44.97;MQRankSum=-1.322e+00;QD=24.46;ReadPosRankSum=0.046;SOR=0.643;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021167.1",3669785,".","A","G","0/0","0/1",571.86,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101497580|gene-LOC101497580|transcript|XM_004511796.3|protein_coding||c.*7502A>G|||||3236|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_004511796.3-1|GENE_exon-XM_004511796.3-1|transcript|rna-XM_004511796.3|protein_coding||c.*3410A>G|||||3236|,G|intergenic_region|MODIFIER|exon-XM_004511796.3-1-exon-XM_027337582.1-1|GENE_exon-XM_004511796.3-1-GENE_exon-XM_027337582.1-1|intergenic_region|GENE_exon-XM_004511796.3-1-GENE_exon-XM_027337582.1-1|||n.3669785A>G||||||;BaseQRankSum=-2.606e+00;ClippingRankSum=0.00;DP=32;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.250;MQ=26.13;MQRankSum=1.46;QD=27.23;ReadPosRankSum=0.896;SOR=0.876;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",5070291,".","A","C","0/1","0/0",62.71,"QD2;SB60SNV;map","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004511984.2-1-exon-XR_001144559.2-1|GENE_exon-XM_004511984.2-1-GENE_exon-XR_001144559.2-1|intergenic_region|GENE_exon-XM_004511984.2-1-GENE_exon-XR_001144559.2-1|||n.5070291A>C||||||;BaseQRankSum=-3.189e+00;ClippingRankSum=0.00;DP=138;ExcessHet=3.0103;FS=62.120;MLEAC=1;MLEAF=0.250;MQ=62.31;MQRankSum=-7.862e+00;QD=1.00;ReadPosRankSum=1.70;SOR=6.273;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NC_021167.1",7142060,".","C","T","0/0","0/1",112.19,"mrd30","AC=1;AF=0.250;AN=4;ANN=T|missense_variant|MODERATE|exon-XM_027337246.1-1|GENE_exon-XM_027337246.1-1|transcript|rna-XM_027337246.1|protein_coding|3/6|c.1219C>T|p.Leu407Phe|1718/2967|1219/2193|407/730||,T|missense_variant|MODERATE|exon-XM_027337247.1-1|GENE_exon-XM_027337247.1-1|transcript|rna-XM_027337247.1|protein_coding|3/6|c.1219C>T|p.Leu407Phe|1624/2873|1219/2193|407/730||,T|missense_variant|MODERATE|exon-XM_027337245.1-1|GENE_exon-XM_027337245.1-1|transcript|rna-XM_027337245.1|protein_coding|2/5|c.1219C>T|p.Leu407Phe|1743/2992|1219/2193|407/730||,T|missense_variant|MODERATE|exon-XM_027337248.1-1|GENE_exon-XM_027337248.1-1|transcript|rna-XM_027337248.1|protein_coding|2/5|c.1219C>T|p.Leu407Phe|1566/2815|1219/2193|407/730||,T|missense_variant|MODERATE|exon-XM_027337250.1-1|GENE_exon-XM_027337250.1-1|transcript|rna-XM_027337250.1|protein_coding|1/4|c.1219C>T|p.Leu407Phe|2288/3496|1219/2193|407/730||,T|missense_variant|MODERATE|exon-XM_027337249.1-1|GENE_exon-XM_027337249.1-1|transcript|rna-XM_027337249.1|protein_coding|2/5|c.1219C>T|p.Leu407Phe|1849/3098|1219/2193|407/730||,T|upstream_gene_variant|MODIFIER|exon-XR_003474460.1-1|GENE_exon-XR_003474460.1-1|transcript|rna-XR_003474460.1|pseudogene||n.-2094C>T|||||2094|,T|upstream_gene_variant|MODIFIER|LOC101496609|LOC101496609|transcript|gene-LOC101496609|pseudogene||n.-4338C>T|||||4338|,T|upstream_gene_variant|MODIFIER|LOC101514647|gene-LOC101514647|transcript|XR_003474460.1|pseudogene||n.-3685C>T|||||2094|,T|downstream_gene_variant|MODIFIER|LOC101514327|LOC101514327|transcript|gene-LOC101514327|pseudogene||n.*3662C>T|||||3662|,T|downstream_gene_variant|MODIFIER|exon-XR_003474461.1-1|GENE_exon-XR_003474461.1-1|transcript|rna-XR_003474461.1|pseudogene||n.*4167G>A|||||4167|,T|non_coding_transcript_variant|MODIFIER|LOC101514647|gene-LOC101514647|transcript|XM_027337245.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101514647|gene-LOC101514647|transcript|XM_027337246.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101514647|gene-LOC101514647|transcript|XM_027337247.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101514647|gene-LOC101514647|transcript|XM_027337248.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101514647|gene-LOC101514647|transcript|XM_027337250.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,T|non_coding_transcript_variant|MODIFIER|LOC101514647|gene-LOC101514647|transcript|XM_027337249.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=0.421;ClippingRankSum=0.00;DP=67;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.250;MQ=59.90;MQRankSum=-3.310e+00;QD=2.88;ReadPosRankSum=2.45;SOR=0.241;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",7884537,".","G","T","1/1","0/1",3371.19,"PASS","AC=3;AF=0.750;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC101492398|gene-LOC101492398|transcript|XM_004512369.3|protein_coding||c.-5646G>T|||||2747|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004512369.3-1|GENE_exon-XM_004512369.3-1|transcript|rna-XM_004512369.3|protein_coding||c.*3028C>A|||||2747|,T|intergenic_region|MODIFIER|exon-XM_004512368.3-1-exon-XM_004512369.3-1|GENE_exon-XM_004512368.3-1-GENE_exon-XM_004512369.3-1|intergenic_region|GENE_exon-XM_004512368.3-1-GENE_exon-XM_004512369.3-1|||n.7884537G>T||||||;BaseQRankSum=3.31;ClippingRankSum=0.00;DP=86;ExcessHet=3.0103;FS=23.784;MLEAC=3;MLEAF=0.750;MQ=41.04;MQRankSum=1.14;QD=29.72;ReadPosRankSum=0.925;SOR=0.556;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",8017637,".","G","A","0/0","0/1",104.73,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intron_variant|MODIFIER|exon-XM_004512393.3-1|GENE_exon-XM_004512393.3-1|transcript|rna-XM_004512393.3|protein_coding|3/4|c.872-123C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101503358|gene-LOC101503358|transcript|XM_004512393.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.64;ClippingRankSum=0.00;DP=142;ExcessHet=3.0103;FS=21.714;MLEAC=1;MLEAF=0.250;MQ=57.54;MQRankSum=-8.150e+00;QD=1.40;ReadPosRankSum=2.47;SOR=4.406;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",8290108,".","T","C","0/0","0/1",129.19,"map","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101511838|gene-LOC101511838|transcript|XM_004512420.3|protein_coding||c.-7526T>C|||||3182|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|LOC101511192|gene-LOC101511192|transcript|XM_004512418.3|protein_coding||c.*4479T>C|||||1738|WARNING_TRANSCRIPT_NO_START_CODON,C|downstream_gene_variant|MODIFIER|exon-XM_004512418.3-1|GENE_exon-XM_004512418.3-1|transcript|rna-XM_004512418.3|protein_coding||c.*1953T>C|||||1738|,C|downstream_gene_variant|MODIFIER|LOC113788138|gene-LOC113788138|transcript|XR_003474646.1|snoRNA||n.*3585T>C|||||3458|,C|downstream_gene_variant|MODIFIER|exon-XR_003474646.1-1|GENE_exon-XR_003474646.1-1|transcript|rna-XR_003474646.1|pseudogene||n.*3458T>C|||||3458|,C|downstream_gene_variant|MODIFIER|LOC113788135|gene-LOC113788135|transcript|XR_003474643.1|snoRNA||n.*3295T>C|||||3165|,C|downstream_gene_variant|MODIFIER|exon-XR_003474643.1-1|GENE_exon-XR_003474643.1-1|transcript|rna-XR_003474643.1|pseudogene||n.*3165T>C|||||3165|,C|downstream_gene_variant|MODIFIER|LOC113788137|gene-LOC113788137|transcript|XR_003474645.1|snoRNA||n.*3070T>C|||||2942|,C|downstream_gene_variant|MODIFIER|exon-XR_003474645.1-1|GENE_exon-XR_003474645.1-1|transcript|rna-XR_003474645.1|pseudogene||n.*2942T>C|||||2942|,C|downstream_gene_variant|MODIFIER|exon-XM_004512420.3-1|GENE_exon-XM_004512420.3-1|transcript|rna-XM_004512420.3|protein_coding||c.*3398A>G|||||3182|,C|non_coding_transcript_exon_variant|MODIFIER|LOC101511512|LOC101511512|transcript|gene-LOC101511512|pseudogene|4/7|n.513A>G||||||;BaseQRankSum=-2.562e+00;ClippingRankSum=0.00;DP=133;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.250;MQ=56.10;MQRankSum=-2.600e-01;QD=2.58;ReadPosRankSum=1.13;SOR=0.880;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",9092239,".","T","C","0/0","0/1",182.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101505631|gene-LOC101505631|transcript|XM_004512489.3|protein_coding||c.-9312T>C|||||4929|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_004512489.3-1|GENE_exon-XM_004512489.3-1|transcript|rna-XM_004512489.3|protein_coding||c.-5029T>C|||||4929|,C|intron_variant|MODIFIER|exon-XM_004512529.1-1|GENE_exon-XM_004512529.1-1|transcript|rna-XM_004512529.1|protein_coding|1/2|c.214+37T>C||||||,C|non_coding_transcript_variant|MODIFIER|LOC101492156|gene-LOC101492156|transcript|XM_004512529.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.453e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.0103;FS=23.419;MLEAC=1;MLEAF=0.250;MQ=54.77;MQRankSum=-5.693e+00;QD=3.72;ReadPosRankSum=0.054;SOR=4.402;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",9969671,".","T","G","0/1","0/0",178.19,"PASS","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_027337499.1-1|GENE_exon-XM_027337499.1-1|transcript|rna-XM_027337499.1|protein_coding|3/5|c.836+3320A>C||||||,G|non_coding_transcript_variant|MODIFIER|LOC101513451|gene-LOC101513451|transcript|XM_027337499.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-3.037e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.0103;FS=27.538;MLEAC=1;MLEAF=0.250;MQ=56.28;MQRankSum=-6.820e+00;QD=3.36;ReadPosRankSum=-8.950e-01;SOR=4.400;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",10224000,".","C","T","0/1","0/0",42.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_004512558.3-1|GENE_exon-XM_004512558.3-1|transcript|rna-XM_004512558.3|protein_coding||c.-3779C>T|||||3544|,T|upstream_gene_variant|MODIFIER|LOC101501561|gene-LOC101501561|transcript|XM_004512557.3|protein_coding||c.-7624C>T|||||3548|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004512557.3-1|GENE_exon-XM_004512557.3-1|transcript|rna-XM_004512557.3|protein_coding||c.-3779C>T|||||3548|,T|upstream_gene_variant|MODIFIER|exon-XM_004512559.3-1|GENE_exon-XM_004512559.3-1|transcript|rna-XM_004512559.3|protein_coding||c.-3779C>T|||||3565|,T|upstream_gene_variant|MODIFIER|LOC101501561|gene-LOC101501561|transcript|XM_004512558.3|protein_coding||c.-7624C>T|||||3544|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|LOC101501561|gene-LOC101501561|transcript|XM_004512559.3|protein_coding||c.-7624C>T|||||3565|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004512556.3-1-exon-XM_004512558.3-1|GENE_exon-XM_004512556.3-1-GENE_exon-XM_004512558.3-1|intergenic_region|GENE_exon-XM_004512556.3-1-GENE_exon-XM_004512558.3-1|||n.10224000C>T||||||;BaseQRankSum=4.85;ClippingRankSum=0.00;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=53.26;MQRankSum=-5.350e+00;QD=0.59;ReadPosRankSum=0.177;SOR=0.573;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021167.1",10483611,".","A","C","0/1","0/0",62.87,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|stop_lost&splice_region_variant|HIGH|exon-XM_004512605.1-1|GENE_exon-XM_004512605.1-1|transcript|rna-XM_004512605.1|protein_coding|1/1|c.2059T>G|p.Ter687Gluext*?|2059/2061|2059/2061|687/686||,C|upstream_gene_variant|MODIFIER|exon-XM_027337501.1-1|GENE_exon-XM_027337501.1-1|transcript|rna-XM_027337501.1|protein_coding||c.-2834T>G|||||2696|,C|downstream_gene_variant|MODIFIER|LOC113788062|gene-LOC113788062|transcript|XM_027337501.1|protein_coding||c.*14044A>C|||||2696|WARNING_TRANSCRIPT_NO_START_CODON,C|non_coding_transcript_variant|MODIFIER|LOC101489810|gene-LOC101489810|transcript|XM_004512605.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-2.529e+00;ClippingRankSum=0.00;DP=33;ExcessHet=3.9794;FS=2.865;MLEAC=2;MLEAF=0.500;MQ=58.80;MQRankSum=0.793;QD=3.31;ReadPosRankSum=1.54;SOR=2.012;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021167.1",10591383,".","G","A","0/0","0/1",701.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004512594.3-1-exon-XR_003474517.1-1|GENE_exon-XM_004512594.3-1-GENE_exon-XR_003474517.1-1|intergenic_region|GENE_exon-XM_004512594.3-1-GENE_exon-XR_003474517.1-1|||n.10591383G>A||||||;BaseQRankSum=4.53;ClippingRankSum=0.00;DP=684;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.250;MQ=54.96;MQRankSum=-1.080e-01;QD=1.91;ReadPosRankSum=0.273;SOR=0.484;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",10829123,".","C","G,*","0/2","1/1",604.2,"MQ40;mrd20;mrd30","AC=2,1;AF=0.500,0.250;AN=4;ANN=G|missense_variant|MODERATE|exon-XM_004512649.1-1|GENE_exon-XM_004512649.1-1|transcript|rna-XM_004512649.1|protein_coding|1/1|c.154G>C|p.Ala52Pro|154/726|154/726|52/241||,G|upstream_gene_variant|MODIFIER|exon-XR_001144608.2-1|GENE_exon-XR_001144608.2-1|transcript|rna-XR_001144608.2|pseudogene||n.-632G>C|||||632|,G|non_coding_transcript_variant|MODIFIER|LOC101505633|gene-LOC101505633|transcript|XM_004512649.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;DP=40;ExcessHet=3.0103;FS=2.125;MLEAC=2,1;MLEAF=0.500,0.250;MQ=35.18;QD=15.90;SOR=0.272;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NC_021167.1",11016757,".","C","A","0/1","0/0",323.87,"BQB","AC=1;AF=0.250;AN=4;ANN=A|non_coding_transcript_exon_variant|MODIFIER|LOC101508828|LOC101508828|transcript|gene-LOC101508828|pseudogene|1/1|n.1168G>T||||||;BaseQRankSum=5.04;ClippingRankSum=0.00;DP=126;ExcessHet=3.9794;FS=26.528;MLEAC=2;MLEAF=0.500;MQ=54.97;MQRankSum=-6.432e+00;QD=5.31;ReadPosRankSum=1.19;SOR=4.824;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",11975127,".","C","T","0/1","1/1",395.73,"MQ40;map;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|LOC101514426-exon-XM_004512746.3-1|LOC101514426-GENE_exon-XM_004512746.3-1|intergenic_region|LOC101514426-GENE_exon-XM_004512746.3-1|||n.11975127C>T||||||;BaseQRankSum=1.47;ClippingRankSum=0.00;DP=18;ExcessHet=3.0103;FS=12.553;MLEAC=3;MLEAF=0.750;MQ=23.45;MQRankSum=1.47;QD=21.99;ReadPosRankSum=0.00;SOR=5.782;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NC_021167.1",12844613,".","T","G","0/0","0/1",330.87,"mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_004512785.1-1-exon-XM_012719272.2-1|GENE_exon-XM_004512785.1-1-GENE_exon-XM_012719272.2-1|intergenic_region|GENE_exon-XM_004512785.1-1-GENE_exon-XM_012719272.2-1|||n.12844613T>G||||||;BaseQRankSum=-5.240e-01;ClippingRankSum=0.00;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=49.75;MQRankSum=-3.357e+00;QD=20.68;ReadPosRankSum=1.47;SOR=0.732;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",13117192,".","A","G","0/0","0/1",71.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027337423.1-1-exon-XM_012719280.2-1|GENE_exon-XM_027337423.1-1-GENE_exon-XM_012719280.2-1|intergenic_region|GENE_exon-XM_027337423.1-1-GENE_exon-XM_012719280.2-1|||n.13117192A>G||||||;BaseQRankSum=-2.829e+00;ClippingRankSum=0.00;DP=135;ExcessHet=3.0103;FS=20.604;MLEAC=1;MLEAF=0.250;MQ=62.89;MQRankSum=-7.319e+00;QD=1.29;ReadPosRankSum=-9.080e-01;SOR=4.206;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",13348955,".","T","C","0/1","0/0",40.23,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC101501451|LOC101501451|transcript|gene-LOC101501451|pseudogene||n.-2751A>G|||||2751|,C|intergenic_region|MODIFIER|LOC101501451-exon-XM_027337631.1-1|LOC101501451-GENE_exon-XM_027337631.1-1|intergenic_region|LOC101501451-GENE_exon-XM_027337631.1-1|||n.13348955T>C||||||;BaseQRankSum=-4.271e+00;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=15.676;MLEAC=1;MLEAF=0.250;MQ=56.09;MQRankSum=-6.953e+00;QD=0.61;ReadPosRankSum=-2.926e+00;SOR=2.822;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NC_021167.1",13739256,".","T","C","0/0","0/1",24.88,"MQ40;QD2;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004512793.1-1-exon-XM_004512795.1-1|GENE_exon-XM_004512793.1-1-GENE_exon-XM_004512795.1-1|intergenic_region|GENE_exon-XM_004512793.1-1-GENE_exon-XM_004512795.1-1|||n.13739256T>C||||||;BaseQRankSum=-1.726e+00;ClippingRankSum=0.00;DP=27;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=33.38;MQRankSum=-2.138e+00;QD=1.91;ReadPosRankSum=-2.078e+00;SOR=0.551;SAL5=2;SAL10=2;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",14067166,".","A","G","0/1","0/0",45.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intron_variant|MODIFIER|exon-XM_027337376.1-1|GENE_exon-XM_027337376.1-1|transcript|rna-XM_027337376.1|protein_coding|6/6|c.768+135A>G||||||,G|non_coding_transcript_variant|MODIFIER|LOC101511298|gene-LOC101511298|transcript|XM_027337376.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=-2.998e+00;ClippingRankSum=0.00;DP=128;ExcessHet=3.0103;FS=17.174;MLEAC=1;MLEAF=0.250;MQ=55.89;MQRankSum=-6.569e+00;QD=0.89;ReadPosRankSum=-1.749e+00;SOR=3.967;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NC_021167.1",14280571,".","G","A","0/0","0/1",335.26,"map","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101496503|LOC101496503|transcript|gene-LOC101496503|pseudogene||n.-4841C>T|||||4841|,A|intron_variant|MODIFIER|exon-XR_001144631.2-1|GENE_exon-XR_001144631.2-1|transcript|rna-XR_001144631.2|pseudogene|2/4|n.1062-47C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474454.1-1|GENE_exon-XR_003474454.1-1|transcript|rna-XR_003474454.1|pseudogene|2/4|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474455.1-1|GENE_exon-XR_003474455.1-1|transcript|rna-XR_003474455.1|pseudogene|2/4|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474457.1-1|GENE_exon-XR_003474457.1-1|transcript|rna-XR_003474457.1|pseudogene|2/4|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474458.1-1|GENE_exon-XR_003474458.1-1|transcript|rna-XR_003474458.1|pseudogene|2/4|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337241.1-1|GENE_exon-XM_027337241.1-1|transcript|rna-XM_027337241.1|protein_coding|2/3|c.358-318C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337242.1-1|GENE_exon-XM_027337242.1-1|transcript|rna-XM_027337242.1|protein_coding|2/3|c.358-318C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474453.1-1|GENE_exon-XR_003474453.1-1|transcript|rna-XR_003474453.1|pseudogene|2/4|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337240.1-1|GENE_exon-XM_027337240.1-1|transcript|rna-XM_027337240.1|protein_coding|2/3|c.358-318C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337237.1-1|GENE_exon-XM_027337237.1-1|transcript|rna-XM_027337237.1|protein_coding|2/3|c.358-318C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337238.1-1|GENE_exon-XM_027337238.1-1|transcript|rna-XM_027337238.1|protein_coding|2/3|c.358-318C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337239.1-1|GENE_exon-XM_027337239.1-1|transcript|rna-XM_027337239.1|protein_coding|3/4|c.358-318C>T||||||,A|intron_variant|MODIFIER|exon-XR_001144627.2-1|GENE_exon-XR_001144627.2-1|transcript|rna-XR_001144627.2|pseudogene|2/4|n.1062-70C>T||||||,A|intron_variant|MODIFIER|exon-XR_001144628.2-1|GENE_exon-XR_001144628.2-1|transcript|rna-XR_001144628.2|pseudogene|2/4|n.1062-47C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474449.1-1|GENE_exon-XR_003474449.1-1|transcript|rna-XR_003474449.1|pseudogene|2/4|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474450.1-1|GENE_exon-XR_003474450.1-1|transcript|rna-XR_003474450.1|pseudogene|2/4|n.1062-47C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474451.1-1|GENE_exon-XR_003474451.1-1|transcript|rna-XR_003474451.1|pseudogene|2/4|n.1062-70C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474452.1-1|GENE_exon-XR_003474452.1-1|transcript|rna-XR_003474452.1|pseudogene|3/5|n.669-62C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474456.1-1|GENE_exon-XR_003474456.1-1|transcript|rna-XR_003474456.1|pseudogene|3/5|n.532-62C>T||||||,A|intron_variant|MODIFIER|exon-XR_003474459.1-1|GENE_exon-XR_003474459.1-1|transcript|rna-XR_003474459.1|pseudogene|2/4|n.492-47C>T||||||,A|intron_variant|MODIFIER|exon-XR_001144625.2-1|GENE_exon-XR_001144625.2-1|transcript|rna-XR_001144625.2|pseudogene|2/3|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XR_001144626.2-1|GENE_exon-XR_001144626.2-1|transcript|rna-XR_001144626.2|pseudogene|2/3|n.1062-62C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337243.1-1|GENE_exon-XM_027337243.1-1|transcript|rna-XM_027337243.1|protein_coding|2/2|c.358-70C>T||||||,A|intron_variant|MODIFIER|exon-XM_027337244.1-1|GENE_exon-XM_027337244.1-1|transcript|rna-XM_027337244.1|protein_coding|2/2|c.358-47C>T||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337237.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_001144631.2|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474454.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474455.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474457.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474458.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337241.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337242.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474453.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337240.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337238.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337239.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_001144627.2|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_001144628.2|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474449.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474450.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474451.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474452.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474456.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_003474459.1|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_001144625.2|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XR_001144626.2|pseudogene||||||||,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337243.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON,A|non_coding_transcript_variant|MODIFIER|LOC101488592|gene-LOC101488592|transcript|XM_027337244.1|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=1.46;ClippingRankSum=0.00;DP=127;ExcessHet=3.0103;FS=13.869;MLEAC=1;MLEAF=0.250;MQ=55.72;MQRankSum=-6.356e+00;QD=6.33;ReadPosRankSum=2.95;SOR=1.684;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
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["NW_004515637.1",45313,".","T","A","1/1","0/1",1194.4,"MQ40;map;mrd30","AC=3;AF=0.750;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003474653.1-1|GENE_exon-XR_003474653.1-1|intergenic_region|GENE_exon-XR_003474653.1-1|||n.45313T>A||||||;BaseQRankSum=1.94;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=2.317;MLEAC=3;MLEAF=0.750;MQ=38.66;MQRankSum=0.821;QD=21.33;ReadPosRankSum=-8.090e-01;SOR=1.747;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515637.1",87173,".","G","A","0/0","0/1",191.19,"BQB;QD2;SB60SNV","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003474653.1-1|GENE_exon-XR_003474653.1-1|intergenic_region|GENE_exon-XR_003474653.1-1|||n.87173G>A||||||;BaseQRankSum=6.53;ClippingRankSum=0.00;DP=223;ExcessHet=3.0103;FS=62.047;MLEAC=1;MLEAF=0.250;MQ=50.65;MQRankSum=-5.927e+00;QD=1.57;ReadPosRankSum=0.057;SOR=3.908;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NW_004515637.1",221630,".","G","T","0/0","0/1",49.19,"map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_003474653.1-1-exon-XM_027337691.1-1|GENE_exon-XR_003474653.1-1-GENE_exon-XM_027337691.1-1|intergenic_region|GENE_exon-XR_003474653.1-1-GENE_exon-XM_027337691.1-1|||n.221630G>T||||||;BaseQRankSum=0.434;ClippingRankSum=0.00;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=45.96;MQRankSum=-2.605e+00;QD=3.51;ReadPosRankSum=1.40;SOR=0.631;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515638.1",15579,".","C","A,*","0/1","2/2",889.19,"MQ40;mrd15;mrd20;mrd30","AC=1,2;AF=0.250,0.500;AN=4;ANN=A|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-8.310e-01;ClippingRankSum=0.00;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,2;MLEAF=0.250,0.500;MQ=28.72;MQRankSum=0.138;QD=31.76;SOR=0.733;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NW_004515639.1",255402,".","C","A","0/1","1/1",486.19,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004513089.2-1-END|GENE_exon-XM_004513089.2-1-END|intergenic_region|GENE_exon-XM_004513089.2-1-END|||n.255402C>A||||||;BaseQRankSum=3.51;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=28.079;MLEAC=3;MLEAF=0.750;MQ=26.59;MQRankSum=3.45;QD=16.21;ReadPosRankSum=1.90;SOR=5.892;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NW_004515642.1",16907,".","T","C","1/1","0/1",540.79,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=1.73;ClippingRankSum=0.00;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=27.25;MQRankSum=0.650;QD=28.46;ReadPosRankSum=1.58;SOR=0.317;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NW_004515643.1",279489,".","A","AT","0/1","0/0",302.15,"PASS","AC=1;AF=0.250;AN=4;ANN=AT|intergenic_region|MODIFIER|exon-XM_004513098.3-1-exon-XR_003474660.1-1|GENE_exon-XM_004513098.3-1-GENE_exon-XR_003474660.1-1|intergenic_region|GENE_exon-XM_004513098.3-1-GENE_exon-XR_003474660.1-1|||n.279489_279490insT||||||;BaseQRankSum=0.836;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.250;MQ=58.90;MQRankSum=-1.473e+00;QD=5.81;ReadPosRankSum=0.229;SOR=1.085;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NW_004515643.1",349408,".","C","T","0/1","0/0",243.71,"map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_003474660.1-1-exon-XM_004513100.2-1|GENE_exon-XR_003474660.1-1-GENE_exon-XM_004513100.2-1|intergenic_region|GENE_exon-XR_003474660.1-1-GENE_exon-XM_004513100.2-1|||n.349408C>T||||||;BaseQRankSum=2.84;ClippingRankSum=0.00;DP=131;ExcessHet=3.0103;FS=15.478;MLEAC=1;MLEAF=0.250;MQ=60.28;MQRankSum=-1.913e+00;QD=4.20;ReadPosRankSum=2.08;SOR=1.312;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NW_004515644.1",16956,".","G","C","0/0","0/1",111.87,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004513102.3-1|GENE_exon-XM_004513102.3-1|intergenic_region|GENE_exon-XM_004513102.3-1|||n.16956G>C||||||;BaseQRankSum=0.588;ClippingRankSum=0.00;DP=126;ExcessHet=3.9794;FS=19.318;MLEAC=2;MLEAF=0.500;MQ=56.65;MQRankSum=-6.327e+00;QD=1.93;ReadPosRankSum=-1.898e+00;SOR=4.171;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515644.1",33936,".","C","T","0/1","0/0",30.19,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|downstream_gene_variant|MODIFIER|exon-XM_004513102.3-1|GENE_exon-XM_004513102.3-1|transcript|rna-XM_004513102.3|protein_coding||c.*2603C>T|||||2241|,T|downstream_gene_variant|MODIFIER|LOC101502311|gene-LOC101502311|transcript|XM_004513101.3|protein_coding||c.*3660C>T|||||2241|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004513101.3-1|GENE_exon-XM_004513101.3-1|transcript|rna-XM_004513101.3|protein_coding||c.*2603C>T|||||2241|,T|downstream_gene_variant|MODIFIER|LOC101502311|gene-LOC101502311|transcript|XM_004513102.3|protein_coding||c.*3667C>T|||||2241|WARNING_TRANSCRIPT_NO_START_CODON,T|intergenic_region|MODIFIER|exon-XM_004513102.3-1-exon-XM_004513103.3-1|GENE_exon-XM_004513102.3-1-GENE_exon-XM_004513103.3-1|intergenic_region|GENE_exon-XM_004513102.3-1-GENE_exon-XM_004513103.3-1|||n.33936C>T||||||;BaseQRankSum=3.18;ClippingRankSum=0.00;DP=57;ExcessHet=3.0103;FS=6.383;MLEAC=1;MLEAF=0.250;MQ=53.83;MQRankSum=-3.168e+00;QD=1.21;ReadPosRankSum=1.36;SOR=2.833;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
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["NW_004515651.1",46799,".","C","T","0/1","1/1",1008.8,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=1.80;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=3.142;MLEAC=3;MLEAF=0.750;MQ=39.87;MQRankSum=-5.160e-01;QD=33.63;ReadPosRankSum=1.60;SOR=0.105;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515651.1",167685,".","C","T","0/1","0/0",15.32,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=0.153;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=22.175;MLEAC=1;MLEAF=0.250;MQ=38.67;MQRankSum=-5.680e-01;QD=0.34;ReadPosRankSum=0.00;SOR=0.001;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515651.1",204712,".","C","T","0/0","0/1",251.19,"PASS","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=2.71;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=25.923;MLEAC=1;MLEAF=0.250;MQ=54.95;MQRankSum=-6.518e+00;QD=5.23;ReadPosRankSum=0.141;SOR=4.801;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515651.1",240052,".","C","T","0/0","0/1",147.19,"map;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=1.40;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.250;MQ=49.75;MQRankSum=-4.157e+00;QD=4.75;ReadPosRankSum=-7.930e-01;SOR=0.297;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515652.1",138749,".","A","T","0/1","0/0",33.19,"map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004513133.2-1-END|GENE_exon-XM_004513133.2-1-END|intergenic_region|GENE_exon-XM_004513133.2-1-END|||n.138749A>T||||||;BaseQRankSum=1.07;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.250;MQ=49.48;MQRankSum=0.135;QD=4.15;ReadPosRankSum=0.792;SOR=0.105;SAL5=2;SAL10=1;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515653.1",130426,".","T","C","0/1","0/0",24.2,"QD2;map","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XR_003474694.1-1-exon-XM_012719371.2-1|GENE_exon-XR_003474694.1-1-GENE_exon-XM_012719371.2-1|intergenic_region|GENE_exon-XR_003474694.1-1-GENE_exon-XM_012719371.2-1|||n.130426T>C||||||;BaseQRankSum=-1.228e+00;ClippingRankSum=0.00;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=63.12;MQRankSum=-6.353e+00;QD=0.58;ReadPosRankSum=1.42;SOR=0.465;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515653.1",210133,".","C","T","0/1","0/0",63.87,"QD2;map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004513138.1-1-exon-XM_027337713.1-1|GENE_exon-XM_004513138.1-1-GENE_exon-XM_027337713.1-1|intergenic_region|GENE_exon-XM_004513138.1-1-GENE_exon-XM_027337713.1-1|||n.210133C>T||||||;BaseQRankSum=3.62;ClippingRankSum=0.00;DP=164;ExcessHet=3.9794;FS=21.458;MLEAC=2;MLEAF=0.500;MQ=55.00;MQRankSum=-5.532e+00;QD=0.82;ReadPosRankSum=-1.133e+00;SOR=3.556;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NW_004515654.1",6624,".","A","C","0/0","0/1",58.19,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-8.350e-01;ClippingRankSum=0.00;DP=83;ExcessHet=3.0103;FS=4.965;MLEAC=1;MLEAF=0.250;MQ=57.39;MQRankSum=-4.441e+00;QD=1.29;ReadPosRankSum=0.299;SOR=0.099;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515654.1",126589,".","A","C","0/0","0/1",74.19,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-2.865e+00;ClippingRankSum=0.00;DP=113;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.250;MQ=49.09;MQRankSum=-1.683e+00;QD=1.40;ReadPosRankSum=-1.920e+00;SOR=0.332;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515655.1",79186,".","AGTAAATTGTGTTTGTCCGTGAGAGACTGCACATGTGTTTGTCCGTGAGAGACTACACCCTGGTAAATTGTGTTTGTCCGTGAGAGACTGCACAGGTGTTTGTCCGTGAGAGACTACACCCTG","A","0/0","0/1",166.15,"map","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC105852740-exon-XR_003474702.1-1|LOC105852740-GENE_exon-XR_003474702.1-1|intergenic_region|LOC105852740-GENE_exon-XR_003474702.1-1|||n.79187_79308del||||||;BaseQRankSum=0.600;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=12.891;MLEAC=1;MLEAF=0.250;MQ=49.71;MQRankSum=4.14;QD=4.62;ReadPosRankSum=-1.647e+00;SOR=0.180;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515655.1",292477,".","G","C","0/1","1/1",849.19,"mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|LOC113788201|gene-LOC113788201|transcript|XM_027337714.1|protein_coding||c.-3954G>C|||||3348|WARNING_TRANSCRIPT_NO_START_CODON,C|upstream_gene_variant|MODIFIER|exon-XM_027337714.1-1|GENE_exon-XM_027337714.1-1|transcript|rna-XM_027337714.1|protein_coding||c.-3386G>C|||||3348|,C|intergenic_region|MODIFIER|exon-XM_004513143.3-1-exon-XM_027337714.1-1|GENE_exon-XM_004513143.3-1-GENE_exon-XM_027337714.1-1|intergenic_region|GENE_exon-XM_004513143.3-1-GENE_exon-XM_027337714.1-1|||n.292477G>C||||||;BaseQRankSum=-1.660e+00;ClippingRankSum=0.00;DP=35;ExcessHet=3.0103;FS=35.453;MLEAC=3;MLEAF=0.750;MQ=45.87;MQRankSum=3.72;QD=31.45;ReadPosRankSum=1.52;SOR=4.885;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515657.1",98664,".","C","T","0/1","0/0",109.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|LOC105852748|gene-LOC105852748|transcript|XM_027337721.1|protein_coding||c.-5641C>T|||||3257|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_027337721.1-1|GENE_exon-XM_027337721.1-1|transcript|rna-XM_027337721.1|protein_coding||c.*3526G>A|||||3257|,T|intergenic_region|MODIFIER|exon-XR_003474706.1-1-exon-XM_027337721.1-1|GENE_exon-XR_003474706.1-1-GENE_exon-XM_027337721.1-1|intergenic_region|GENE_exon-XR_003474706.1-1-GENE_exon-XM_027337721.1-1|||n.98664C>T||||||;BaseQRankSum=5.86;ClippingRankSum=0.00;DP=147;ExcessHet=3.0103;FS=32.429;MLEAC=1;MLEAF=0.250;MQ=47.63;MQRankSum=-3.304e+00;QD=1.46;ReadPosRankSum=0.531;SOR=3.715;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NW_004515657.1",135701,".","G","A","0/1","0/0",209.87,"PASS","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003474707.1-1-exon-XR_003474708.1-1|GENE_exon-XR_003474707.1-1-GENE_exon-XR_003474708.1-1|intergenic_region|GENE_exon-XR_003474707.1-1-GENE_exon-XR_003474708.1-1|||n.135701G>A||||||;BaseQRankSum=3.63;ClippingRankSum=0.00;DP=91;ExcessHet=3.9794;FS=33.961;MLEAC=2;MLEAF=0.500;MQ=52.74;MQRankSum=-4.424e+00;QD=6.36;ReadPosRankSum=-2.291e+00;SOR=4.161;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515657.1",266503,".","T","C","0/1","1/1",2124.96,"mrd30","AC=3;AF=0.750;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_012719393.2-1|GENE_exon-XM_012719393.2-1|transcript|rna-XM_012719393.2|protein_coding||c.-3110A>G|||||3069|,C|downstream_gene_variant|MODIFIER|LOC105852751|gene-LOC105852751|transcript|XM_012719393.2|protein_coding||c.*4646T>C|||||3069|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_012719393.2-1-exon-XR_003474711.1-1|GENE_exon-XM_012719393.2-1-GENE_exon-XR_003474711.1-1|intergenic_region|GENE_exon-XM_012719393.2-1-GENE_exon-XR_003474711.1-1|||n.266503T>C||||||;BaseQRankSum=-1.593e+00;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=6.254;MLEAC=4;MLEAF=1.00;MQ=40.41;MQRankSum=1.49;QD=31.81;ReadPosRankSum=0.499;SOR=0.132;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515657.1",589100,".","A","G","0/0","0/1",399.21,"BQB;map","AC=1;AF=0.250;AN=4;ANN=G|downstream_gene_variant|MODIFIER|LOC101499552|gene-LOC101499552|transcript|XM_012719385.2|protein_coding||c.*4959A>G|||||3242|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012719385.2-1|GENE_exon-XM_012719385.2-1|transcript|rna-XM_012719385.2|protein_coding||c.*3242A>G|||||3242|,G|downstream_gene_variant|MODIFIER|LOC105852749|gene-LOC105852749|transcript|XM_012719389.2|protein_coding||c.*2618A>G|||||1532|WARNING_TRANSCRIPT_NO_START_CODON,G|downstream_gene_variant|MODIFIER|exon-XM_012719389.2-1|GENE_exon-XM_012719389.2-1|transcript|rna-XM_012719389.2|protein_coding||c.*1549A>G|||||1532|,G|intergenic_region|MODIFIER|exon-XM_012719389.2-1-exon-XM_004513167.3-1|GENE_exon-XM_012719389.2-1-GENE_exon-XM_004513167.3-1|intergenic_region|GENE_exon-XM_012719389.2-1-GENE_exon-XM_004513167.3-1|||n.589100A>G||||||;BaseQRankSum=-4.285e+00;ClippingRankSum=0.00;DP=108;ExcessHet=3.0103;FS=4.620;MLEAC=1;MLEAF=0.250;MQ=48.96;MQRankSum=-5.269e+00;QD=8.15;ReadPosRankSum=1.78;SOR=1.253;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515659.1",457,".","G","C","0/0","0/1",311.87,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=1.13;ClippingRankSum=0.00;DP=121;ExcessHet=3.9794;FS=2.794;MLEAC=2;MLEAF=0.500;MQ=54.56;MQRankSum=-6.395e+00;QD=5.78;ReadPosRankSum=1.10;SOR=1.101;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515660.1",212514,".","C","T","0/0","0/1",54.19,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027337728.1-1-exon-XM_012719403.2-1|GENE_exon-XM_027337728.1-1-GENE_exon-XM_012719403.2-1|intergenic_region|GENE_exon-XM_027337728.1-1-GENE_exon-XM_012719403.2-1|||n.212514C>T||||||;BaseQRankSum=0.915;ClippingRankSum=0.00;DP=92;ExcessHet=3.0103;FS=8.532;MLEAC=1;MLEAF=0.250;MQ=56.14;MQRankSum=-6.342e+00;QD=1.13;ReadPosRankSum=-2.653e+00;SOR=2.061;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515662.1",10756,".","G","T","0/1","0/0",153.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004513206.3-1|GENE_exon-XM_004513206.3-1|intergenic_region|GENE_exon-XM_004513206.3-1|||n.10756G>T||||||;BaseQRankSum=4.20;ClippingRankSum=0.00;DP=281;ExcessHet=3.0103;FS=14.954;MLEAC=1;MLEAF=0.250;MQ=57.11;MQRankSum=1.44;QD=1.04;ReadPosRankSum=1.43;SOR=0.601;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NW_004515664.1",161413,".","G","A","0/0","0/1",31.26,"MQ40;QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_004513222.3-1|GENE_exon-XM_004513222.3-1|transcript|rna-XM_004513222.3|protein_coding||c.-6567C>T|||||4922|,A|downstream_gene_variant|MODIFIER|LOC101496728|gene-LOC101496728|transcript|XM_004513222.3|protein_coding||c.*9916G>A|||||4922|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_004513222.3-1-LOC101500078|GENE_exon-XM_004513222.3-1-LOC101500078|intergenic_region|GENE_exon-XM_004513222.3-1-LOC101500078|||n.161413G>A||||||;BaseQRankSum=1.42;ClippingRankSum=0.00;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=34.12;MQRankSum=-2.306e+00;QD=1.08;ReadPosRankSum=2.20;SOR=0.616;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515664.1",338304,".","AATATAT","A,AATATATATATATATAT","1/2","1/1",1972.16,"mrd30","AC=3,1;AF=0.750,0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101497924|LOC101497924|transcript|gene-LOC101497924|pseudogene||n.*4240_*4245delATATAT|||||4245|,AATATATATATATATAT|downstream_gene_variant|MODIFIER|LOC101497924|LOC101497924|transcript|gene-LOC101497924|pseudogene||n.*4239_*4240insATATATATAT|||||4239|,A|intergenic_region|MODIFIER|LOC101497590-LOC101497924|LOC101497590-LOC101497924|intergenic_region|LOC101497590-LOC101497924|||n.338305_338310delATATAT||||||,AATATATATATATATAT|intergenic_region|MODIFIER|LOC101497590-LOC101497924|LOC101497590-LOC101497924|intergenic_region|LOC101497590-LOC101497924|||n.338310_338311insATATATATAT||||||;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=3,1;MLEAF=0.750,0.250;MQ=41.22;QD=31.70;SOR=1.112;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515665.1",20605,".","CA","C","0/1","0/0",156.83,"mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004513232.3-1|GENE_exon-XM_004513232.3-1|intergenic_region|GENE_exon-XM_004513232.3-1|||n.20606delA||||||;BaseQRankSum=2.26;ClippingRankSum=0.00;DP=40;ExcessHet=3.9794;FS=12.175;MLEAC=2;MLEAF=0.500;MQ=48.71;MQRankSum=-3.067e+00;QD=14.26;ReadPosRankSum=1.80;SOR=0.587;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515667.1",1123,".","G","C","0/0","0/1",15.01,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=2.34;ClippingRankSum=0.00;DP=110;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.54;MQRankSum=-7.040e+00;QD=0.25;ReadPosRankSum=-6.280e-01;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515668.1",1509,".","CCTCCAT","C","0/1","0/0",27.16,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_027337750.1-1|GENE_exon-XM_027337750.1-1|intergenic_region|GENE_exon-XM_027337750.1-1|||n.1510_1515delCTCCAT||||||;BaseQRankSum=-1.541e+00;ClippingRankSum=0.00;DP=116;ExcessHet=3.0103;FS=8.386;MLEAC=1;MLEAF=0.250;MQ=52.34;MQRankSum=-3.296e+00;QD=0.52;ReadPosRankSum=0.485;SOR=2.897;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515668.1",54433,".","G","C","0/0","0/1",45.86,"QD2","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_027337750.1-1-exon-XM_027337751.1-1|GENE_exon-XM_027337750.1-1-GENE_exon-XM_027337751.1-1|intergenic_region|GENE_exon-XM_027337750.1-1-GENE_exon-XM_027337751.1-1|||n.54433G>C||||||;BaseQRankSum=2.11;ClippingRankSum=0.00;DP=120;ExcessHet=3.0103;FS=8.146;MLEAC=1;MLEAF=0.250;MQ=57.88;MQRankSum=-3.150e+00;QD=0.73;ReadPosRankSum=-3.310e-01;SOR=1.730;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515668.1",151960,".","T","A","0/1","0/0",19.26,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027337751.1-1-END|GENE_exon-XM_027337751.1-1-END|intergenic_region|GENE_exon-XM_027337751.1-1-END|||n.151960T>A||||||;BaseQRankSum=1.70;ClippingRankSum=0.00;DP=90;ExcessHet=3.0103;FS=5.914;MLEAC=1;MLEAF=0.250;MQ=69.17;MQRankSum=-5.062e+00;QD=0.52;ReadPosRankSum=1.79;SOR=1.558;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515668.1",249237,".","A","C","0/1","0/0",213.87,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_027337751.1-1-END|GENE_exon-XM_027337751.1-1-END|intergenic_region|GENE_exon-XM_027337751.1-1-END|||n.249237A>C||||||;BaseQRankSum=-1.745e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.9794;FS=11.723;MLEAC=2;MLEAF=0.500;MQ=56.34;MQRankSum=-6.051e+00;QD=5.63;ReadPosRankSum=0.140;SOR=3.451;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515668.1",329161,".","T","G","1/1","0/1",1578.38,"map","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XM_027337751.1-1-END|GENE_exon-XM_027337751.1-1-END|intergenic_region|GENE_exon-XM_027337751.1-1-END|||n.329161T>G||||||;BaseQRankSum=0.821;ClippingRankSum=0.00;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=3;MLEAF=0.750;MQ=41.03;MQRankSum=5.73;QD=19.98;ReadPosRankSum=0.470;SOR=0.687;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515669.1",3980,".","C","A","0/0","0/1",25.05,"QD2;map;mrd30","AC=1;AF=0.250;AN=4;ANN=A|downstream_gene_variant|MODIFIER|exon-XR_003474732.1-1|GENE_exon-XR_003474732.1-1|transcript|rna-XR_003474732.1|pseudogene||n.*2939G>T|||||2939|,A|intergenic_region|MODIFIER|exon-XR_003474732.1-1|GENE_exon-XR_003474732.1-1|intergenic_region|GENE_exon-XR_003474732.1-1|||n.3980C>A||||||;BaseQRankSum=2.71;ClippingRankSum=0.00;DP=58;ExcessHet=3.0103;FS=4.863;MLEAC=1;MLEAF=0.250;MQ=54.19;MQRankSum=-1.350e+00;QD=0.86;ReadPosRankSum=-1.007e+00;SOR=2.099;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515669.1",27542,".","A","T","0/0","0/1",76.87,"mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_003474732.1-1-exon-XR_003474733.1-1|GENE_exon-XR_003474732.1-1-GENE_exon-XR_003474733.1-1|intergenic_region|GENE_exon-XR_003474732.1-1-GENE_exon-XR_003474733.1-1|||n.27542A>T||||||;BaseQRankSum=-1.108e+00;ClippingRankSum=0.00;DP=40;ExcessHet=3.9794;FS=2.567;MLEAC=2;MLEAF=0.500;MQ=55.71;MQRankSum=-4.496e+00;QD=3.49;ReadPosRankSum=0.058;SOR=1.329;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515670.1",23996,".","A","G","0/0","0/1",68.19,"QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-2.154e+00;ClippingRankSum=0.00;DP=218;ExcessHet=3.0103;FS=13.932;MLEAC=1;MLEAF=0.250;MQ=40.89;MQRankSum=-1.088e+00;QD=0.68;ReadPosRankSum=-4.510e+00;SOR=2.895;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515671.1",56847,".","C","T","0/1","0/0",24.2,"MQ40;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XR_001144677.2-1-END|GENE_exon-XR_001144677.2-1-END|intergenic_region|GENE_exon-XR_001144677.2-1-END|||n.56847C>T||||||;BaseQRankSum=1.74;ClippingRankSum=0.00;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=39.60;MQRankSum=-1.646e+00;QD=2.02;ReadPosRankSum=-5.990e-01;SOR=0.223;SAL5=2;SAL10=2;SAL15=1;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515673.1",2761,".","CAATGACACAAACACACCTATTGGATGCACAAGATTGGATAAAAACTCTAGTTGGATAAGAATAAGTCTAGGGAGGACGAAAATAACCTAAATGTTCATCG","C","0/0","0/1",748.15,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-3.070e-01;ClippingRankSum=0.00;DP=111;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.250;MQ=43.68;MQRankSum=2.52;QD=12.47;ReadPosRankSum=-2.784e+00;SOR=1.005;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NW_004515674.1",20445,".","A","G","0/1","0/0",161.87,"MQ40","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-2.667e+00;ClippingRankSum=0.00;DP=90;ExcessHet=3.9794;FS=1.490;MLEAC=2;MLEAF=0.500;MQ=37.92;MQRankSum=-3.016e+00;QD=3.68;ReadPosRankSum=-1.750e-01;SOR=1.167;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515674.1",59181,".","T","C","0/0","0/1",1111.3,"MQ40","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-2.413e+00;ClippingRankSum=0.00;DP=96;ExcessHet=3.0103;FS=17.707;MLEAC=1;MLEAF=0.250;MQ=39.68;MQRankSum=-6.900e-01;QD=18.84;ReadPosRankSum=-1.424e+00;SOR=2.252;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PL"]
["NW_004515674.1",90771,".","T","G","0/1","0/0",78.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-4.728e+00;ClippingRankSum=0.00;DP=389;ExcessHet=3.0103;FS=5.015;MLEAC=1;MLEAF=0.250;MQ=51.39;MQRankSum=-4.316e+00;QD=0.49;ReadPosRankSum=-5.580e-01;SOR=1.242;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515676.1",125237,".","A","AT","0/0","0/1",225.15,"PASS","AC=1;AF=0.250;AN=4;ANN=AT|intergenic_region|MODIFIER|exon-XM_012719422.1-1-exon-XR_003474740.1-1|GENE_exon-XM_012719422.1-1-GENE_exon-XR_003474740.1-1|intergenic_region|GENE_exon-XM_012719422.1-1-GENE_exon-XR_003474740.1-1|||n.125237_125238insT||||||;BaseQRankSum=-1.411e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=5.072;MLEAC=1;MLEAF=0.250;MQ=52.27;MQRankSum=-4.638e+00;QD=4.17;ReadPosRankSum=-1.326e+00;SOR=0.898;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515676.1",188793,".","T","C","0/1","0/0",106.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=C|intragenic_variant|MODIFIER|LOC113788232|gene-LOC113788232|gene_variant|gene-LOC113788232|||n.188793T>C||||||,C|non_coding_transcript_exon_variant|MODIFIER|exon-XR_003474740.1-1|GENE_exon-XR_003474740.1-1|transcript|rna-XR_003474740.1|pseudogene|1/3|n.279A>G||||||;BaseQRankSum=-4.140e+00;ClippingRankSum=0.00;DP=101;ExcessHet=3.0103;FS=12.702;MLEAC=1;MLEAF=0.250;MQ=55.30;MQRankSum=-6.121e+00;QD=1.97;ReadPosRankSum=-1.721e+00;SOR=2.090;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NW_004515676.1",288765,".","G","T","0/1","0/0",185.19,"map","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_004513244.3-1-exon-XM_004513245.3-1|GENE_exon-XM_004513244.3-1-GENE_exon-XM_004513245.3-1|intergenic_region|GENE_exon-XM_004513244.3-1-GENE_exon-XM_004513245.3-1|||n.288765G>T||||||;BaseQRankSum=3.99;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=56.40;MQRankSum=-8.238e+00;QD=2.37;ReadPosRankSum=2.02;SOR=0.536;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515676.1",354427,".","G","GT","0/1","0/0",56.15,"QD2","AC=1;AF=0.250;AN=4;ANN=GT|intergenic_region|MODIFIER|exon-XM_004513245.3-1-exon-XM_004513249.1-1|GENE_exon-XM_004513245.3-1-GENE_exon-XM_004513249.1-1|intergenic_region|GENE_exon-XM_004513245.3-1-GENE_exon-XM_004513249.1-1|||n.354427_354428insT||||||;BaseQRankSum=0.873;ClippingRankSum=0.00;DP=139;ExcessHet=3.0103;FS=5.738;MLEAC=1;MLEAF=0.250;MQ=52.38;MQRankSum=1.57;QD=0.94;ReadPosRankSum=-2.800e-01;SOR=0.533;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NW_004515680.1",2307,".","A","G","0/0","0/1",30.19,"MQ40;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-1.678e+00;ClippingRankSum=0.00;DP=85;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.250;MQ=38.75;MQRankSum=2.67;QD=0.69;ReadPosRankSum=0.779;SOR=0.984;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515681.1",89205,".","T","C","0/0","0/1",93.87,"map","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-3.268e+00;ClippingRankSum=0.00;DP=98;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=57.66;MQRankSum=-4.790e+00;QD=2.09;ReadPosRankSum=-3.153e+00;SOR=0.892;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515682.1",159045,".","G","T","0/1","1/1",573.96,"map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|LOC105852762-exon-XM_004513261.1-1|LOC105852762-GENE_exon-XM_004513261.1-1|intergenic_region|LOC105852762-GENE_exon-XM_004513261.1-1|||n.159045G>T||||||;BaseQRankSum=1.82;ClippingRankSum=0.00;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=41.24;MQRankSum=1.99;QD=19.13;ReadPosRankSum=1.97;SOR=1.685;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515682.1",419707,".","A","G","0/0","0/1",11.54,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|LOC105852763-exon-XR_003474742.1-1|LOC105852763-GENE_exon-XR_003474742.1-1|intergenic_region|LOC105852763-GENE_exon-XR_003474742.1-1|||n.419707A>G||||||;BaseQRankSum=-4.163e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.0103;FS=32.122;MLEAC=1;MLEAF=0.250;MQ=51.96;MQRankSum=-4.331e+00;QD=0.33;ReadPosRankSum=-3.230e-01;SOR=5.133;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515683.1",123523,".","T","A","1/1","0/1",1007.32,"MQ40;map;mrd30","AC=3;AF=0.750;AN=4;ANN=A|downstream_gene_variant|MODIFIER|LOC101491523|gene-LOC101491523|transcript|XM_004513276.3|protein_coding||c.*6651T>A|||||3655|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004513276.3-1|GENE_exon-XM_004513276.3-1|transcript|rna-XM_004513276.3|protein_coding||c.*3822T>A|||||3655|,A|intergenic_region|MODIFIER|exon-XM_004513276.3-1-LOC113788241|GENE_exon-XM_004513276.3-1-LOC113788241|intergenic_region|GENE_exon-XM_004513276.3-1-LOC113788241|||n.123523T>A||||||;BaseQRankSum=0.484;ClippingRankSum=0.00;DP=51;ExcessHet=3.0103;FS=2.130;MLEAC=3;MLEAF=0.750;MQ=39.44;MQRankSum=0.804;QD=20.15;ReadPosRankSum=-1.252e+00;SOR=1.464;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515684.1",101023,".","C","A","1/1","0/1",1620.19,"PASS","AC=3;AF=0.750;AN=4;ANN=A|upstream_gene_variant|MODIFIER|LOC101500303|gene-LOC101500303|transcript|XM_004513300.3|protein_coding||c.-8090C>A|||||2611|WARNING_TRANSCRIPT_NO_START_CODON,A|upstream_gene_variant|MODIFIER|exon-XM_004513300.3-1|GENE_exon-XM_004513300.3-1|transcript|rna-XM_004513300.3|protein_coding||c.-2803C>A|||||2611|,A|intergenic_region|MODIFIER|exon-XM_004513299.3-1-exon-XM_004513300.3-1|GENE_exon-XM_004513299.3-1-GENE_exon-XM_004513300.3-1|intergenic_region|GENE_exon-XM_004513299.3-1-GENE_exon-XM_004513300.3-1|||n.101023C>A||||||;BaseQRankSum=1.95;ClippingRankSum=0.00;DP=101;ExcessHet=3.0103;FS=4.260;MLEAC=3;MLEAF=0.750;MQ=45.45;MQRankSum=-9.290e-01;QD=16.37;ReadPosRankSum=0.411;SOR=0.478;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PL"]
["NW_004515684.1",230177,".","T","TTTATTA,TTTATTATTATTA","2/2","1/2",2403.16,"mrd30","AC=1,3;AF=0.250,0.750;AN=4;ANN=TTTATTA|intergenic_region|MODIFIER|LOC101504028-exon-XM_004513307.2-1|LOC101504028-GENE_exon-XM_004513307.2-1|intergenic_region|LOC101504028-GENE_exon-XM_004513307.2-1|||n.230177_230178insTTATTA||||||,TTTATTATTATTA|intergenic_region|MODIFIER|LOC101504028-exon-XM_004513307.2-1|LOC101504028-GENE_exon-XM_004513307.2-1|intergenic_region|LOC101504028-GENE_exon-XM_004513307.2-1|||n.230177_230178insTTATTATTATTA||||||;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1,3;MLEAF=0.250,0.750;MQ=46.20;QD=34.41;SOR=1.329;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515686.1",42219,".","G","A","0/1","0/0",86.87,"mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_027330126.1-1-exon-XR_003470003.1-1|GENE_exon-XM_027330126.1-1-GENE_exon-XR_003470003.1-1|intergenic_region|GENE_exon-XM_027330126.1-1-GENE_exon-XR_003470003.1-1|||n.42219G>A||||||;BaseQRankSum=0.637;ClippingRankSum=0.00;DP=49;ExcessHet=3.9794;FS=16.406;MLEAC=2;MLEAF=0.500;MQ=57.44;MQRankSum=-2.043e+00;QD=4.83;ReadPosRankSum=1.66;SOR=3.227;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=1;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515686.1",254955,".","G","T","0/1","1/1",1246.2,"MQ40;map;mrd15;mrd20;mrd30","AC=3;AF=0.750;AN=4;ANN=T|downstream_gene_variant|MODIFIER|LOC101511102|gene-LOC101511102|transcript|XM_004513328.3|protein_coding||c.*7467G>T|||||4019|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XM_004513328.3-1|GENE_exon-XM_004513328.3-1|transcript|rna-XM_004513328.3|protein_coding||c.*4219G>T|||||4019|,T|intergenic_region|MODIFIER|exon-XM_004513328.3-1-exon-XM_004513329.3-1|GENE_exon-XM_004513328.3-1-GENE_exon-XM_004513329.3-1|intergenic_region|GENE_exon-XM_004513328.3-1-GENE_exon-XM_004513329.3-1|||n.254955G>T||||||;BaseQRankSum=1.82;ClippingRankSum=0.00;DP=31;ExcessHet=3.0103;FS=7.924;MLEAC=4;MLEAF=1.00;MQ=34.50;MQRankSum=1.96;QD=23.75;ReadPosRankSum=-9.530e-01;SOR=3.381;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515686.1",385466,".","A","C","0/1","0/0",96.19,"PASS","AC=1;AF=0.250;AN=4;ANN=C|upstream_gene_variant|MODIFIER|exon-XM_004513331.1-1|GENE_exon-XM_004513331.1-1|transcript|rna-XM_004513331.1|protein_coding||c.-4419T>G|||||4419|,C|downstream_gene_variant|MODIFIER|LOC101512383|gene-LOC101512383|transcript|XM_004513331.1|protein_coding||c.*6110A>C|||||4419|WARNING_TRANSCRIPT_NO_START_CODON,C|intergenic_region|MODIFIER|exon-XM_004513331.1-1-exon-XM_012719446.2-1|GENE_exon-XM_004513331.1-1-GENE_exon-XM_012719446.2-1|intergenic_region|GENE_exon-XM_004513331.1-1-GENE_exon-XM_012719446.2-1|||n.385466A>C||||||;BaseQRankSum=-3.299e+00;ClippingRankSum=0.00;DP=98;ExcessHet=3.0103;FS=7.031;MLEAC=1;MLEAF=0.250;MQ=56.02;MQRankSum=-5.902e+00;QD=2.09;ReadPosRankSum=-9.790e-01;SOR=2.303;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=1","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515687.1",335125,".","A","T","0/0","0/1",24.88,"QD2;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027330138.1-1-END|GENE_exon-XM_027330138.1-1-END|intergenic_region|GENE_exon-XM_027330138.1-1-END|||n.335125A>T||||||;BaseQRankSum=2.42;ClippingRankSum=0.00;DP=32;ExcessHet=3.9794;FS=0.000;MLEAC=2;MLEAF=0.500;MQ=53.35;MQRankSum=-3.524e+00;QD=1.38;ReadPosRankSum=3.03;SOR=0.846;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515688.1",85345,".","A","G","0/1","0/0",410.19,"BQB;QD2;map","AC=1;AF=0.250;AN=4;ANN=G|intergenic_region|MODIFIER|exon-XR_003470007.1-1|GENE_exon-XR_003470007.1-1|intergenic_region|GENE_exon-XR_003470007.1-1|||n.85345A>G||||||;BaseQRankSum=-6.802e+00;ClippingRankSum=0.00;DP=444;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.250;MQ=55.61;MQRankSum=-2.118e+00;QD=1.80;ReadPosRankSum=0.180;SOR=0.441;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515688.1",258469,".","C","T","0/1","0/0",12.61,"MQ40;QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027330143.1-1-exon-XM_027330141.1-1|GENE_exon-XM_027330143.1-1-GENE_exon-XM_027330141.1-1|intergenic_region|GENE_exon-XM_027330143.1-1-GENE_exon-XM_027330141.1-1|||n.258469C>T||||||;BaseQRankSum=2.44;ClippingRankSum=0.00;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=28.65;MQRankSum=-1.618e+00;QD=0.63;ReadPosRankSum=-2.379e+00;SOR=0.693;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515689.1",7785,".","T","A","0/0","0/1",66.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|LOC101502834|LOC101502834|intergenic_region|LOC101502834|||n.7785T>A||||||;BaseQRankSum=-1.990e+00;ClippingRankSum=0.00;DP=142;ExcessHet=3.0103;FS=8.138;MLEAC=1;MLEAF=0.250;MQ=54.17;MQRankSum=-5.914e+00;QD=1.32;ReadPosRankSum=-1.447e+00;SOR=2.303;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
["NW_004515690.1",14099,".","G","A","0/1","0/0",80.19,"BQB;QD2","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XM_027330150.1-1|GENE_exon-XM_027330150.1-1|transcript|rna-XM_027330150.1|protein_coding||c.-1666C>T|||||1666|,A|downstream_gene_variant|MODIFIER|LOC101504768|gene-LOC101504768|transcript|XM_027330150.1|protein_coding||c.*2025G>A|||||1666|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XM_027330150.1-1-TRNAF-GAA|GENE_exon-XM_027330150.1-1-gene-TRNAF-GAA-21|intergenic_region|GENE_exon-XM_027330150.1-1-gene-TRNAF-GAA-21|||n.14099G>A||||||;BaseQRankSum=4.14;ClippingRankSum=0.00;DP=144;ExcessHet=3.0103;FS=12.458;MLEAC=1;MLEAF=0.250;MQ=59.70;MQRankSum=-2.873e+00;QD=1.06;ReadPosRankSum=-1.603e+00;SOR=2.821;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515691.1",127553,".","T","G","1/1","0/1",1861.96,"MQ40;map;mrd30","AC=3;AF=0.750;AN=4;ANN=G|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-6.980e-01;ClippingRankSum=0.00;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=4;MLEAF=1.00;MQ=35.78;MQRankSum=2.60;QD=34.48;ReadPosRankSum=-5.860e-01;SOR=1.096;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515692.1",1774,".","G","C","0/0","0/1",442.87,"PASS","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=0.852;ClippingRankSum=0.00;DP=170;ExcessHet=3.9794;FS=23.160;MLEAC=2;MLEAF=0.500;MQ=53.27;MQRankSum=-6.589e+00;QD=4.43;ReadPosRankSum=0.404;SOR=4.328;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515694.1",412681,".","T","TTATATATATA,TTATATATA","1/1","2/2",635.24,"mrd10;mrd15;mrd20;mrd30","AC=2,2;AF=0.500,0.500;AN=4;ANN=TTATATATATA|upstream_gene_variant|MODIFIER|exon-XM_004513434.3-1|GENE_exon-XM_004513434.3-1|transcript|rna-XM_004513434.3|protein_coding||c.-3378_-3377insTATATATATA|||||3317|,TTATATATA|upstream_gene_variant|MODIFIER|exon-XM_004513434.3-1|GENE_exon-XM_004513434.3-1|transcript|rna-XM_004513434.3|protein_coding||c.-3378_-3377insTATATATA|||||3317|,TTATATATATA|downstream_gene_variant|MODIFIER|LOC101496839|gene-LOC101496839|transcript|XM_004513434.3|protein_coding||c.*8274_*8275insTATATATATA|||||3317|WARNING_TRANSCRIPT_NO_START_CODON,TTATATATA|downstream_gene_variant|MODIFIER|LOC101496839|gene-LOC101496839|transcript|XM_004513434.3|protein_coding||c.*8274_*8275insTATATATA|||||3317|WARNING_TRANSCRIPT_NO_START_CODON,TTATATATATA|intergenic_region|MODIFIER|exon-XM_004513434.3-1-exon-XM_012719476.2-1|GENE_exon-XM_004513434.3-1-GENE_exon-XM_012719476.2-1|intergenic_region|GENE_exon-XM_004513434.3-1-GENE_exon-XM_012719476.2-1|||n.412681_412682insTATATATATA||||||,TTATATATA|intergenic_region|MODIFIER|exon-XM_004513434.3-1-exon-XM_012719476.2-1|GENE_exon-XM_004513434.3-1-GENE_exon-XM_012719476.2-1|intergenic_region|GENE_exon-XM_004513434.3-1-GENE_exon-XM_012719476.2-1|||n.412681_412682insTATATATA||||||;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2,2;MLEAF=0.500,0.500;MQ=49.13;QD=32.91;SOR=2.712;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515694.1",674340,".","T","C","0/1","0/0",176.41,"mrd30","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004513441.2-1-exon-XM_012719474.1-1|GENE_exon-XM_004513441.2-1-GENE_exon-XM_012719474.1-1|intergenic_region|GENE_exon-XM_004513441.2-1-GENE_exon-XM_012719474.1-1|||n.674340T>C||||||;BaseQRankSum=-3.505e+00;ClippingRankSum=0.00;DP=48;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.250;MQ=52.15;MQRankSum=-4.071e+00;QD=8.02;ReadPosRankSum=0.452;SOR=1.536;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515698.1",1059,".","G","A","0/1","0/0",21.89,"QD2;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=2.40;ClippingRankSum=0.00;DP=34;ExcessHet=3.9794;FS=2.963;MLEAC=2;MLEAF=0.500;MQ=48.79;MQRankSum=1.32;QD=1.56;ReadPosRankSum=0.00;SOR=1.802;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515699.1",36491,".","A","C","0/0","0/1",249.19,"BQB","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=-4.541e+00;ClippingRankSum=0.00;DP=138;ExcessHet=3.0103;FS=11.314;MLEAC=1;MLEAF=0.250;MQ=55.37;MQRankSum=-6.798e+00;QD=4.22;ReadPosRankSum=-2.530e-01;SOR=2.734;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515700.1",568917,".","A","G","0/0","0/1",84.19,"MQ40;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=G|upstream_gene_variant|MODIFIER|LOC101508425|gene-LOC101508425|transcript|XM_027330173.1|protein_coding||c.-5015A>G|||||4398|WARNING_TRANSCRIPT_NO_START_CODON,G|upstream_gene_variant|MODIFIER|exon-XM_027330173.1-1|GENE_exon-XM_027330173.1-1|transcript|rna-XM_027330173.1|protein_coding||c.-4398A>G|||||4398|,G|intergenic_region|MODIFIER|exon-XM_027330172.1-1-exon-XM_027330173.1-1|GENE_exon-XM_027330172.1-1-GENE_exon-XM_027330173.1-1|intergenic_region|GENE_exon-XM_027330172.1-1-GENE_exon-XM_027330173.1-1|||n.568917A>G||||||;BaseQRankSum=-2.046e+00;ClippingRankSum=0.00;DP=50;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.250;MQ=23.76;MQRankSum=2.35;QD=4.68;ReadPosRankSum=-6.350e-01;SOR=0.354;SAL5=2;SAL10=2;SAL15=2;SAL20=1;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515701.1",11956,".","G","T","0/0","0/1",1090.87,"SB60SNV","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=2.49;ClippingRankSum=0.00;DP=287;ExcessHet=3.9794;FS=134.735;MLEAC=2;MLEAF=0.500;MQ=54.68;MQRankSum=-1.091e+01;QD=7.22;ReadPosRankSum=3.46;SOR=7.167;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515702.1",4446,".","TAA","T","0/0","0/1",60.33,"MQ40;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=0.524;ClippingRankSum=0.00;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=34.31;MQRankSum=-3.190e-01;QD=5.03;ReadPosRankSum=-8.020e-01;SOR=1.179;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515703.1",339825,".","A","T","0/1","0/0",48.47,"QD2","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|exon-XM_027330174.1-1-exon-XM_004513462.3-1|GENE_exon-XM_027330174.1-1-GENE_exon-XM_004513462.3-1|intergenic_region|GENE_exon-XM_027330174.1-1-GENE_exon-XM_004513462.3-1|||n.339825A>T||||||;BaseQRankSum=3.40;ClippingRankSum=0.00;DP=83;ExcessHet=3.0103;FS=23.477;MLEAC=1;MLEAF=0.250;MQ=68.78;MQRankSum=-4.804e+00;QD=1.43;ReadPosRankSum=1.36;SOR=4.168;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515705.1",8610,".","G","T","0/1","1/1",3963.19,"MQ40","AC=3;AF=0.750;AN=4;ANN=T|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=2.03;ClippingRankSum=0.00;DP=111;ExcessHet=3.0103;FS=3.338;MLEAC=3;MLEAF=0.750;MQ=37.23;MQRankSum=3.34;QD=26.88;ReadPosRankSum=0.753;SOR=0.737;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515706.1",11701,".","C","A","0/1","0/0",15.33,"QD2;map;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004513464.1-1|GENE_exon-XM_004513464.1-1|intergenic_region|GENE_exon-XM_004513464.1-1|||n.11701C>A||||||;BaseQRankSum=1.70;ClippingRankSum=0.00;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=49.39;MQRankSum=-1.525e+00;QD=1.02;ReadPosRankSum=1.38;SOR=0.569;SAL5=2;SAL10=2;SAL15=2;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515706.1",132407,".","T","C","0/1","0/0",224.19,"BQB","AC=1;AF=0.250;AN=4;ANN=C|intergenic_region|MODIFIER|exon-XM_004513464.1-1|GENE_exon-XM_004513464.1-1|intergenic_region|GENE_exon-XM_004513464.1-1|||n.132407T>C||||||;BaseQRankSum=-4.226e+00;ClippingRankSum=0.00;DP=149;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.250;MQ=50.00;MQRankSum=-5.274e+00;QD=3.45;ReadPosRankSum=1.86;SOR=0.980;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
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["NW_004515706.1",266579,".","G","A","0/1","0/0",32.19,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004513464.1-1-END|GENE_exon-XM_004513464.1-1-END|intergenic_region|GENE_exon-XM_004513464.1-1-END|||n.266579G>A||||||;BaseQRankSum=2.83;ClippingRankSum=0.00;DP=79;ExcessHet=3.0103;FS=5.047;MLEAC=1;MLEAF=0.250;MQ=54.28;MQRankSum=-3.966e+00;QD=0.77;ReadPosRankSum=-1.501e+00;SOR=1.514;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=1;SAL50=0","GT:AD:DP:GQ:PL"]
["NW_004515707.1",40675,".","A","T","0/1","0/0",141.19,"QD2","AC=1;AF=0.250;AN=4;ANN=T|upstream_gene_variant|MODIFIER|exon-XM_027330185.1-1|GENE_exon-XM_027330185.1-1|transcript|rna-XM_027330185.1|protein_coding||c.-723T>A|||||723|,T|downstream_gene_variant|MODIFIER|LOC113783973|gene-LOC113783973|transcript|XM_027330185.1|protein_coding||c.*1994A>T|||||723|WARNING_TRANSCRIPT_NO_START_CODON,T|downstream_gene_variant|MODIFIER|exon-XR_003470023.1-1|GENE_exon-XR_003470023.1-1|transcript|rna-XR_003470023.1|pseudogene||n.*366T>A|||||366|,T|intergenic_region|MODIFIER|exon-XM_027330185.1-1-exon-XR_003470023.1-1|GENE_exon-XM_027330185.1-1-GENE_exon-XR_003470023.1-1|intergenic_region|GENE_exon-XM_027330185.1-1-GENE_exon-XR_003470023.1-1|||n.40675A>T||||||;BaseQRankSum=-8.300e-02;ClippingRankSum=0.00;DP=130;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.250;MQ=59.99;MQRankSum=0.00;QD=1.99;ReadPosRankSum=-1.350e+00;SOR=1.372;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515707.1",407465,".","G","A","0/1","0/0",1104.19,"BQB;MQBSNV;QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XR_003470022.1-1-exon-XM_004513474.3-1|GENE_exon-XR_003470022.1-1-GENE_exon-XM_004513474.3-1|intergenic_region|GENE_exon-XR_003470022.1-1-GENE_exon-XM_004513474.3-1|||n.407465G>A||||||;BaseQRankSum=15.53;ClippingRankSum=0.00;DP=2892;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.250;MQ=54.98;MQRankSum=-1.920e+01;QD=0.77;ReadPosRankSum=0.148;SOR=0.499;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515707.1",532287,".","G","A","0/1","0/0",242.19,"PASS","AC=1;AF=0.250;AN=4;ANN=A|upstream_gene_variant|MODIFIER|exon-XR_001144707.2-1|GENE_exon-XR_001144707.2-1|transcript|rna-XR_001144707.2|pseudogene||n.-469C>T|||||469|,A|upstream_gene_variant|MODIFIER|LOC101493287|gene-LOC101493287|transcript|XM_027330188.1|protein_coding||c.-9968G>A|||||3126|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|LOC101488711|gene-LOC101488711|transcript|XM_004513475.3|protein_coding||c.*5637G>A|||||4612|WARNING_TRANSCRIPT_NO_START_CODON,A|downstream_gene_variant|MODIFIER|exon-XM_004513475.3-1|GENE_exon-XM_004513475.3-1|transcript|rna-XM_004513475.3|protein_coding||c.*4777G>A|||||4612|,A|downstream_gene_variant|MODIFIER|exon-XM_027330188.1-1|GENE_exon-XM_027330188.1-1|transcript|rna-XM_027330188.1|protein_coding||c.*3126C>T|||||3126|WARNING_TRANSCRIPT_NO_START_CODON,A|intergenic_region|MODIFIER|exon-XR_001144707.2-1-exon-XM_027330188.1-1|GENE_exon-XR_001144707.2-1-GENE_exon-XM_027330188.1-1|intergenic_region|GENE_exon-XR_001144707.2-1-GENE_exon-XM_027330188.1-1|||n.532287G>A||||||;BaseQRankSum=3.93;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=15.874;MLEAC=1;MLEAF=0.250;MQ=55.99;MQRankSum=-7.534e+00;QD=4.18;ReadPosRankSum=0.207;SOR=3.671;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515707.1",581007,".","G","T","0/1","0/0",348.87,"BQB","AC=1;AF=0.250;AN=4;ANN=T|5_prime_UTR_variant|MODIFIER|exon-XM_004513482.3-1|GENE_exon-XM_004513482.3-1|transcript|rna-XM_004513482.3|protein_coding|1/3|c.-92C>A|||||2415|,T|upstream_gene_variant|MODIFIER|LOC101489050|gene-LOC101489050|transcript|XM_004513476.3|protein_coding||c.-2677G>T|||||1671|WARNING_TRANSCRIPT_NO_START_CODON,T|upstream_gene_variant|MODIFIER|exon-XM_004513476.3-1|GENE_exon-XM_004513476.3-1|transcript|rna-XM_004513476.3|protein_coding||c.-1730G>T|||||1671|,T|non_coding_transcript_variant|MODIFIER|LOC101494249|gene-LOC101494249|transcript|XM_004513482.3|protein_coding||||||||WARNING_TRANSCRIPT_NO_START_CODON;BaseQRankSum=4.05;ClippingRankSum=0.00;DP=163;ExcessHet=3.9794;FS=6.534;MLEAC=2;MLEAF=0.500;MQ=50.87;MQRankSum=-2.943e+00;QD=5.06;ReadPosRankSum=0.726;SOR=0.199;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515707.1",698242,".","C","A","0/1","0/0",19.33,"MQ40;QD2;map;mrd10;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|exon-XM_004513476.3-1-exon-XR_003470031.1-1|GENE_exon-XM_004513476.3-1-GENE_exon-XR_003470031.1-1|intergenic_region|GENE_exon-XM_004513476.3-1-GENE_exon-XR_003470031.1-1|||n.698242C>A||||||;BaseQRankSum=1.50;ClippingRankSum=0.00;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=27.35;MQRankSum=2.29;QD=1.93;ReadPosRankSum=-2.820e-01;SOR=0.169;SAL5=2;SAL10=1;SAL15=0;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PGT:PID:PL"]
["NW_004515709.1",8262,".","C","T","0/0","0/1",60.54,"MQ40;map;mrd15;mrd20;mrd30","AC=1;AF=0.250;AN=4;ANN=T|intergenic_region|MODIFIER|LOC101495848|LOC101495848|intergenic_region|LOC101495848|||n.8262C>T||||||;BaseQRankSum=1.04;ClippingRankSum=0.00;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=24.72;MQRankSum=2.73;QD=4.04;ReadPosRankSum=1.81;SOR=0.090;SAL5=2;SAL10=2;SAL15=1;SAL20=0;SAL30=0;SAL40=0;SAL50=0","GT:AD:DP:GQ:PL"]
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["NW_004515710.1",20861,".","G","A","0/1","0/0",19.87,"QD2","AC=1;AF=0.250;AN=4;ANN=A|intergenic_region|MODIFIER|||||||||||||;BaseQRankSum=1.33;ClippingRankSum=0.00;DP=161;ExcessHet=3.9794;FS=0.000;MLEAC=1;MLEAF=0.250;MQ=55.64;MQRankSum=-5.220e+00;QD=0.33;ReadPosRankSum=1.99;SOR=0.631;SAL5=2;SAL10=2;SAL15=2;SAL20=2;SAL30=2;SAL40=2;SAL50=2","GT:AD:DP:GQ:PL"]
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