X.ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLP_1.Ratio	CLP_1.Alt_average_sj	CLP_1.Model_average_sj	CLP_1.Alt_sj	CLP_1.Model_sj	CLP_1.isfiltered	CLP_2.Ratio	CLP_2.Alt_average_sj	CLP_2.Model_average_sj	CLP_2.Alt_sj	CLP_2.Model_sj	CLP_2.isfiltered	CLP_3.Ratio	CLP_3.Alt_average_sj	CLP_3.Model_average_sj	CLP_3.Alt_sj	CLP_3.Model_sj	CLP_3.isfiltered	CLP_4.Ratio	CLP_4.Alt_average_sj	CLP_4.Model_average_sj	CLP_4.Alt_sj	CLP_4.Model_sj	CLP_4.isfiltered	Sham_1.Ratio	Sham_1.Alt_average_sj	Sham_1.Model_average_sj	Sham_1.Alt_sj	Sham_1.Model_sj	Sham_1.isfiltered	Sham_2.Ratio	Sham_2.Alt_average_sj	Sham_2.Model_average_sj	Sham_2.Alt_sj	Sham_2.Model_sj	Sham_2.isfiltered	Sham_3.Ratio	Sham_3.Alt_average_sj	Sham_3.Model_average_sj	Sham_3.Alt_sj	Sham_3.Model_sj	Sham_3.isfiltered	Sham_4.Ratio	Sham_4.Alt_average_sj	Sham_4.Model_average_sj	Sham_4.Alt_sj	Sham_4.Model_sj	Sham_4.isfiltered	Pvalue	Tvalue	DiffType	Gene	Symbol	Chr	GeneType	Description
known_NIR_60	chr1	121247701	121260221	-	121247701	121255420	5pMXE	ENSMUST00000003818.14	known	0.72	99	38	99	38	y	0.92	188	17	188	17	y	0.77	155	47	155	47	y	0.81	106	25	106	25	y	0.70	57	24	57	24	y	0.44	40	51	40	51	y	0.55	40	33	40	33	y	0.53	41	37	41	37	y	0.011883217115366	3.64017628587218	up	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_75	chr1	130566970	130570710	-	130566970	130570671	A5SS	ENSMUST00000027657.14	known	0.05	225	4562	225	4562	y	0.05	142	2820	142	2820	y	0.04	163	3554	163	3554	y	0.04	129	2978	129	2978	y	0.03	62	1879	62	1879	y	0.03	99	3073	99	3073	y	0.03	64	1962	64	1962	y	0.03	73	2638	73	2638	y	0.0138468329888591	5.19615242270663	up	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
known_NIR_197	chr1	143615422	143617386	+	143615496	143617386	A5SS	ENSMUST00000126514.2	known	0.15	14	77	14	77	y	0.15	6	33	6	33	y	0.15	10	58	10	58	y	0.24	11	35	11	35	y	0.05	2	41	2	41	y	0.07	5	66	5	66	y	0.03	2	68	2	68	y	0.03	2	77	2	77	y	0.00622787624346405	5.21422605092113	up	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
known_NIR_279	chr1	160862289	160863322	+	160862027	160863322	A5SS	ENSMUST00000160152.8	known	0.86	6	1	6	1	n	1.00	4	0	4	0	n	0.88	7	1	7	1	n	1.00	7	0	7	0	n	0.29	2	5	2	5	n	0.50	5	5	5	5	y	0.33	2	4	2	4	n	0.80	4	1	4	1	n	0.0241168265435974	3.73063628069309	up	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_319	chr1	162501225	162504260	-	162501225;162501720	162501668;162504260	ES	ENSMUST00000182149.8	known	0.31	14	30.5	14	28;33	y	0.23	5	17.0	5	13;21	y	0.36	16	29.0	16	38;20	y	0.42	9	12.5	9	13;12	y	0.27	10	26.5	10	24;29	y	0.14	5	31.0	5	28;34	y	0.16	5	25.5	5	20;31	y	0.22	10	35.0	10	36;34	y	0.0410037885952887	2.6555381460616	up	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_432	chr1	171157094	171165820	+	171157094;171158853	171158802;171165820	ES	ENSMUST00000111299.8	known	0.56	29	22.5	29	1;44	n	0.60	13	8.5	13	0;17	n	0.60	28	19.0	28	0;38	n	0.70	23	10.0	23	0;20	n	0.46	15	17.5	15	0;35	n	0.36	16	29.0	16	1;57	n	0.53	17	15.0	17	2;28	y	0.33	10	20.0	10	1;39	n	0.0155227804097626	3.55526218395717	up	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_433	chr1	171157094	171165820	+	171157094;171158853	171158821;171165820	ES	ENSMUST00000111300.8	known	0.50	29	29.5	29	15;44	y	0.53	13	11.5	13	6;17	y	0.53	28	24.5	28	11;38	y	0.65	23	12.5	23	5;20	y	0.34	15	28.5	15	22;35	y	0.29	16	38.5	16	20;57	y	0.47	17	19.0	17	10;28	y	0.26	10	29.0	10	19;39	y	0.0117142515209091	3.72391761187575	up	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_452	chr1	171938141	171938217	+	171938141	171938244	A3SS	ENSMUST00000135192.8	known	0.01	4	300	4	300	y	0.02	5	234	5	234	y	0.02	4	197	4	197	y	0.02	5	226	5	226	y	0.01	2	162	2	162	y	0.01	2	255	2	255	y	0.00	0	140	0	140	n	0.01	2	236	2	236	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000026553.18	Copa	chr1	protein_coding	coatomer protein complex subunit alpha
known_NIR_484	chr1	177271658	177274655	+	177270161	177274655	A5SS	ENSMUST00000195002.2	known	0.20	4	16	4	16	y	0.33	4	8	4	8	y	0.30	3	7	3	7	y	0.38	6	10	6	10	y	0.10	1	9	1	9	n	0.12	3	22	3	22	y	0.17	2	10	2	10	y	0.27	3	8	3	8	y	0.0428160559711691	2.56160538057942	up	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
known_NIR_555	chr1	185081032;185082078	185082034;185084379	+	185081032	185084379	cassetteExon	ENSMUST00000027916.13	known	0.09	17.0	165	15;19	165	y	0.14	9.5	60	11;8	60	y	0.08	14.5	171	14;15	171	y	0.07	6.5	88	7;6	88	y	0.04	5.5	124	6;5	124	y	0.04	7.5	160	8;7	160	y	0.07	9.0	129	10;8	129	y	0.04	6.0	145	7;5	145	y	0.0470548818342134	2.75198593263602	up	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_658	chr1	36463584	36463919	-	36459116	36463919	A3SS	ENSMUST00000192969.6	known	0.92	57	5	57	5	y	1.00	20	0	20	0	n	0.90	53	6	53	6	y	1.00	20	0	20	0	n	0.83	20	4	20	4	y	0.91	51	5	51	5	y	0.87	41	6	41	6	y	0.82	50	11	50	11	y	0.0284289015960128	2.92044037135101	up	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
known_NIR_693	chr1	37469574	37470378	+	37469574	37470374	A3SS	ENSMUST00000027285.13	known	0.12	7	53	7	53	y	0.06	2	33	2	33	y	0.10	6	54	6	54	y	0.08	4	46	4	46	y	0.06	2	31	2	31	y	0.04	3	65	3	65	y	0.00	0	30	0	30	n	0.00	0	55	0	55	n	0.0172726595757374	3.28439249215942	up	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_747	chr1	44197495	44197965	+	44197419	44197965	A5SS	ENSMUST00000027214.4	known	0.32	7	15	7	15	y	0.25	3	9	3	9	y	0.31	4	9	4	9	y	0.24	4	13	4	13	y	0.00	0	8	0	8	n	0.19	4	17	4	17	y	0.15	2	11	2	11	y	0.12	3	22	3	22	y	0.0191644389245709	3.60776055954107	up	ENSMUSG00000026048.17	Ercc5	chr1	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 5
known_NIR_776	chr1	52158767	52159071	+	52158782	52159071	A5SS	ENSMUST00000186574.7	known	0.33	13	26	13	26	y	0.33	2	4	2	4	n	0.19	6	25	6	25	y	0.37	7	12	7	12	y	0.20	9	35	9	35	y	0.19	9	39	9	39	y	0.22	6	21	6	21	y	0.09	4	43	4	43	y	0.0411013662009671	2.65361388801511	up	ENSMUSG00000026104.15	Stat1	chr1	protein_coding	signal transducer and activator of transcription 1
known_NIR_905	chr1	71636546;71636831	71636801;71637533	-	71636546	71637533	cassetteExon	ENSMUST00000188674.7	known	0.29	780.0	1898	9;1551	1898	y	0.32	539.5	1126	55;1024	1126	y	0.26	616.5	1736	41;1192	1736	y	0.33	602.0	1208	44;1160	1208	y	0.24	272.5	877	8;537	877	y	0.25	461.5	1411	27;896	1411	y	0.26	322.0	931	9;635	931	y	0.25	385.5	1174	16;755	1174	y	0.0466166947001749	3.06186217847897	up	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_906	chr1	71636546;71636906	71636801;71637533	-	71636546	71637533	cassetteExon	ENSMUST00000188674.7	known	0.27	692.0	1898	9;1375	1898	y	0.45	912.0	1126	55;1769	1126	y	0.26	597.5	1736	41;1154	1736	y	0.38	749.5	1208	44;1455	1208	y	0.18	189.5	877	8;371	877	y	0.21	382.0	1411	27;737	1411	y	0.17	192.5	931	9;376	931	y	0.18	262.5	1174	16;509	1174	y	0.0401567648701286	3.33635641550392	up	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_997	chr1	75412655;75412956	75412759;75413422	+	75412655	75413422	cassetteExon	ENSMUST00000037796.14	known	0.46	35.0	41	1;69	41	n	0.43	21.5	28	1;42	28	n	0.33	20.0	40	0;40	40	n	0.44	22.0	28	1;43	28	n	0.21	7.5	29	0;15	29	n	0.22	9.5	33	0;19	33	n	0.31	9.5	21	0;19	21	n	0.35	21.0	39	2;40	39	y	0.0199127840934996	3.1748429432936	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1081	chr1	87701953;87702850	87702535;87703479	+	87701953	87703479	cassetteExon	ENSMUST00000137638.8	known	0.32	22.5	47	43;2	47	y	0.38	11.0	18	22;0	18	n	0.36	15.5	28	30;1	28	n	0.34	13.5	26	27;0	26	n	0.28	10.0	26	20;0	26	n	0.20	11.5	45	23;0	45	n	0.20	8.5	35	17;0	35	n	0.22	12.5	44	25;0	44	n	0.00235420686826793	5.45544725589981	up	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1092	chr1	88035521	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.79	207	54	207	54	y	0.97	96	3	96	3	y	0.79	254	68	254	68	y	0.87	109	16	109	16	y	0.54	149	128	149	128	y	0.70	242	104	242	104	y	0.60	206	139	206	139	y	0.54	219	183	219	183	y	0.00399627768827881	4.56070170039655	up	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1098	chr1	88067053	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.88	393	54	393	54	y	0.98	151	3	151	3	y	0.84	358	68	358	68	y	0.93	207	16	207	16	y	0.72	331	128	331	128	y	0.82	468	104	468	104	y	0.71	341	139	341	139	y	0.70	434	183	434	183	y	0.00626394582633664	4.1281677584334	up	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1218	chr1	97753762	97759180	-	97753765	97759180	A3SS	ENSMUST00000058762.15	known	0.23	7	24	7	24	y	0.17	5	25	5	25	y	0.16	10	51	10	51	y	0.24	5	16	5	16	y	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.16	5	27	5	27	y	0.00	0	20	0	20	n	0.0195757645255541	3.56289417132099	up	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1272	chr10	116363854;116373183	116373126;116384938	-	116363854	116384938	cassetteExon	ENSMUST00000105267.8	known	0.28	11.0	28	20;2	28	y	0.35	6.0	11	8;4	11	y	0.33	12.0	24	18;6	24	y	0.32	7.0	15	9;5	15	y	0.17	5.0	24	7;3	24	y	0.25	7.5	23	11;4	23	y	0.22	5.5	20	8;3	20	y	0.30	14.5	34	16;13	34	y	0.0441511328645796	2.74574770049665	up	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1284	chr10	117185372	117191840	-	117191757	117191840	3pMXE	ENSMUST00000175888.2	known	0.96	51	2	51	2	y	0.97	33	1	33	1	n	1.00	61	0	61	0	n	0.94	31	2	31	2	y	0.91	31	3	31	3	y	0.92	67	6	67	6	y	0.90	38	4	38	4	y	0.91	42	4	42	4	y	0.0147526680821338	4.37269732861889	up	ENSMUSG00000055531.13	Cpsf6	chr10	protein_coding	cleavage and polyadenylation specific factor 6
known_NIR_1382	chr10	128035627;128036171	128036013;128037075	+	128035627;128036834	128036755;128037075	MXE	ENSMUST00000143827.8	known	0.03	9.0	257.0	15;3	1;513	n	0.03	3.5	98.5	6;1	0;197	n	0.03	7.0	240.0	14;0	0;480	n	0.04	7.0	151.0	12;2	0;302	n	0.02	6.5	267.0	13;0	0;534	n	0.02	9.0	399.5	16;2	2;797	y	0.03	7.5	288.5	15;0	3;574	n	0.01	10.0	711.5	20;0	6;1417	n	0.0478566196408534	2.61116483933547	up	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1412	chr10	128328271	128329408	-	128328271;128328578	128328471;128329408	ES	ENSMUST00000217969.2	known	0.02	16	944.5	16	1831;58	y	0.01	8	530.0	8	1023;37	y	0.02	19	991.0	19	1916;66	y	0.02	10	534.0	10	1032;36	y	0.01	4	610.5	4	1181;40	y	0.00	3	933.0	3	1786;80	y	0.01	6	779.5	6	1515;44	y	0.01	5	805.5	5	1548;63	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1414	chr10	128328271	128329408	-	128328404	128329408	A3SS	ENSMUST00000220307.2	known	0.76	16	5	16	5	y	0.80	8	2	8	2	y	0.76	19	6	19	6	y	0.83	10	2	10	2	y	0.67	4	2	4	2	n	0.60	3	2	3	2	n	0.46	6	7	6	7	y	0.71	5	2	5	2	n	0.0426984247879447	3.08695652173913	up	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1532	chr10	29189729	29193503	+	29189360	29193503	A5SS	ENSMUST00000161605.8	known	0.94	98	6	98	6	y	0.95	35	2	35	2	y	0.96	48	2	48	2	y	0.98	48	1	48	1	n	0.90	73	8	73	8	y	0.93	86	6	86	6	y	0.91	71	7	71	7	y	0.91	97	10	97	10	y	0.00655106588683762	4.24264068711928	up	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1621	chr10	53951366	53952559	-	53951366	53951622	5pMXE	ENSMUST00000003843.16	known	0.01	2	276	2	276	y	0.02	3	120	3	120	y	0.01	1	191	1	191	n	0.03	4	143	4	143	y	0.01	1	131	1	131	n	0.00	1	250	1	250	n	0.00	0	128	0	128	n	0.00	0	250	0	250	n	0.0435576347221575	2.77746029931765	up	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1627	chr10	58091704	58092569	+	58091704	58092642	A3SS	ENSMUST00000057659.14	known	0.10	2	19	2	19	y	0.06	1	16	1	16	n	0.10	1	9	1	9	n	0.05	1	19	1	19	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00975092968303951	5.89363552987764	up	ENSMUSG00000038039.14	Gcc2	chr10	protein_coding	GRIP and coiled-coil domain containing 2
known_NIR_1804	chr10	77458250	77477294	+	77466728	77477294	A5SS&ES	ENSMUST00000174113.8	known	0.01	1	139	1	139	n	0.01	1	119	1	119	n	0.02	3	124	3	124	y	0.02	2	81	2	81	y	0.01	1	73	1	73	n	0.00	0	86	0	86	n	0.00	0	96	0	96	n	0.01	1	76	1	76	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000112241.2	Gm49325	chr10	protein_coding	predicted gene, 49325
known_NIR_1877	chr10	79908352	79911062	-	79908352	79918449	A5SS	ENSMUST00000219260.2	known	0.23	8	27	8	27	y	0.48	12	13	12	13	y	0.32	8	17	8	17	y	0.34	11	21	11	21	y	0.12	2	15	2	15	y	0.05	1	18	1	18	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.00610597405062489	5.01901147542783	up	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1884	chr10	79962936	79963792	+	79962936	79963738	A3SS	ENSMUST00000144883.8	known	0.02	6	316	6	316	y	0.02	2	125	2	125	y	0.02	7	374	7	374	y	0.04	6	139	6	139	y	0.01	3	257	3	257	y	0.01	4	357	4	357	y	0.00	0	314	0	314	n	0.01	4	303	4	303	y	0.0307597787889486	3.13049516849971	up	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1896	chr10	80101012	80109841	+	80097409	80109841	A5SS	ENSMUST00000156935.8	known	0.94	105	7	105	7	y	0.93	52	4	52	4	y	0.92	70	6	70	6	y	0.88	44	6	44	6	y	0.86	62	10	62	10	y	0.86	87	14	87	14	y	0.89	57	7	57	7	y	0.84	71	14	71	14	y	0.0179771110243771	3.29178080915518	up	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
known_NIR_1904	chr10	80231119	80231270	-	80231035	80231270	A3SS	ENSMUST00000092295.10	known	0.09	28	299	28	299	y	0.07	12	160	12	160	y	0.06	16	266	16	266	y	0.09	15	160	15	160	y	0.03	7	194	7	194	y	0.05	18	320	18	320	y	0.07	22	277	22	277	y	0.04	13	277	13	277	y	0.0391664064465137	2.63964807038436	up	ENSMUSG00000035478.15	Mbd3	chr10	protein_coding	methyl-CpG binding domain protein 3
known_NIR_1929	chr10	80475067	80475371	+	80475067	80475414	A3SS	ENSMUST00000079773.14	known	0.01	2	247	2	247	y	0.01	1	177	1	177	n	0.02	5	266	5	266	y	0.02	2	123	2	123	y	0.01	1	136	1	136	n	0.00	0	253	0	253	n	0.00	0	216	0	216	n	0.00	0	209	0	209	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000003345.17	Csnk1g2	chr10	protein_coding	casein kinase 1, gamma 2
known_NIR_1986	chr10	81150952;81153237	81153160;81153600	+	81150952	81153600	cassetteExon	ENSMUST00000163075.8	known	0.15	5.5	32	4;7	32	y	0.17	2.5	12	2;3	12	y	0.16	4.5	23	5;4	23	y	0.23	3.0	10	4;2	10	y	0.10	1.5	13	1;2	13	n	0.14	5.5	35	5;6	35	y	0.12	3.5	25	2;5	25	y	0.08	2.5	27	3;2	27	y	0.0254478371837432	3.05063648747657	up	ENSMUSG00000034902.18	Pip5k1c	chr10	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
known_NIR_2057	chr10	88055222	88060894	+	88055222	88070256	A3SS	ENSMUST00000020248.16	known	0.04	6	150	6	150	y	0.04	3	67	3	67	y	0.03	5	146	5	146	y	0.02	1	58	1	58	n	0.00	0	98	0	98	n	0.01	1	174	1	174	n	0.00	0	135	0	135	n	0.02	2	117	2	117	y	0.0101755401234568	3.69274472937998	up	ENSMUSG00000020056.17	Washc3	chr10	protein_coding	WASH complex subunit 3
known_NIR_2131	chr10	97318409	97319201	+	97315651	97319201	A5SS	ENSMUST00000105287.11	known	0.44	77	99	77	99	y	0.57	75	56	75	56	y	0.40	76	115	76	115	y	0.53	47	41	47	41	y	0.18	12	54	12	54	y	0.19	12	52	12	52	y	0.12	10	73	10	73	y	0.15	13	73	13	73	y	0.00163108832534401	7.67811750184204	up	ENSMUSG00000019929.17	Dcn	chr10	protein_coding	decorin
known_NIR_2220	chr11	102184168	102184472	-	102184147	102184472	A3SS	ENSMUST00000141516.8	known	0.17	14	68	14	68	y	0.18	5	23	5	23	y	0.22	14	49	14	49	y	0.22	10	35	10	35	y	0.11	5	40	5	40	y	0.16	12	62	12	62	y	0.15	7	41	7	41	y	0.05	3	56	3	56	y	0.0405959541416966	2.83582171808348	up	ENSMUSG00000059995.13	Atxn7l3	chr11	protein_coding	ataxin 7-like 3
known_NIR_2305	chr11	106668387;106669633	106669543;106669910	-	106668387	106669910	cassetteExon	ENSMUST00000155107.8	known	0.26	4.5	13	9;0	13	n	-	-	-	-	-	-	0.21	3.0	11	4;2	11	y	0.20	0.5	2	1;0	2	n	0.07	1.0	13	2;0	13	n	0.10	1.5	13	2;1	13	n	0.13	1.5	10	3;0	10	n	0.19	3.0	13	6;0	13	n	0.0247750859027769	3.18752338713169	up	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
known_NIR_2324	chr11	109256588	109283172	+	109256588	109271041	3pMXE	ENSMUST00000106702.4	known	0.79	33	9	33	9	y	0.61	20	13	20	13	y	0.74	26	9	26	9	y	0.67	24	12	24	12	y	0.62	25	15	25	15	y	0.58	36	26	36	26	y	0.50	18	18	18	18	y	0.57	27	20	27	20	y	0.0335582593412383	2.89193511665273	up	ENSMUSG00000020611.15	Gna13	chr11	protein_coding	guanine nucleotide binding protein, alpha 13
known_NIR_2340	chr11	113354921;113413831	113413727;113414292	-	113354921	113414292	cassetteExon	ENSMUST00000071539.10	known	0.01	1.0	98	1;1	98	n	0.01	0.5	66	1;0	66	n	0.02	1.0	49	2;0	49	n	0.01	0.5	57	0;1	57	n	0.01	0.5	36	0;1	36	n	0.00	0.0	63	0;0	63	n	0.00	0.0	32	0;0	32	n	0.00	0.0	46	0;0	46	n	0.0300197452875444	2.82842712474619	up	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2372	chr11	114891899	114892313	-	114891811	114892313	A3SS	ENSMUST00000092464.10	known	0.22	2	7	2	7	n	0.50	4	4	4	4	n	0.14	2	12	2	12	y	0.40	4	6	4	6	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.0405288293305479	2.75409849240193	up	ENSMUSG00000044811.14	Cd300c2	chr11	protein_coding	CD300C molecule 2
known_NIR_2446	chr11	116072846;116074450	116074290;116089048	-	116072846;116080401	116080241;116089048	MXE	ENSMUST00000072948.11	known	0.50	1164.5	1150.0	1275;1054	1173;1127	y	0.60	720.5	475.0	780;661	453;497	y	0.49	1155.5	1222.0	1256;1055	1319;1125	y	0.58	789.5	580.5	846;733	614;547	y	0.41	659.0	951.5	739;579	1033;870	y	0.39	1282.0	2028.0	1389;1175	2232;1824	y	0.39	674.0	1045.5	747;601	1125;966	y	0.45	1093.0	1313.0	1176;1010	1381;1245	y	0.0104463498655833	4.24793689690486	up	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2448	chr11	116074450	116089048	-	116080401	116089048	3pMXE	ENSMUST00000124684.2	known	0.48	1054	1127	1054	1127	y	0.57	661	497	661	497	y	0.48	1055	1125	1055	1125	y	0.57	733	547	733	547	y	0.40	579	870	579	870	y	0.39	1175	1824	1175	1824	y	0.38	601	966	601	966	y	0.45	1010	1245	1010	1245	y	0.0111276339107422	3.9634695544549	up	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2481	chr11	117157421	117181224	+	117109757	117181224	A5SS	ENSMUST00000093907.11	known	0.12	4	30	4	30	y	0.20	2	8	2	8	y	0.16	5	26	5	26	y	0.21	3	11	3	11	y	0.04	1	25	1	25	n	0.08	2	23	2	23	y	0.00	0	17	0	17	n	0.12	3	22	3	22	y	0.0154841516517337	3.40817821956109	up	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
known_NIR_2552	chr11	120357558	120358008	-	120357593	120358008	A3SS	ENSMUST00000143233.8	known	0.14	6	37	6	37	y	0.12	2	15	2	15	y	0.18	6	28	6	28	y	0.16	3	16	3	16	y	0.08	2	23	2	23	y	0.00	0	38	0	38	n	0.07	2	26	2	26	y	0.11	4	34	4	34	y	0.0264670002045716	3.19374388453426	up	ENSMUSG00000057594.13	Arl16	chr11	protein_coding	ADP-ribosylation factor-like 16
known_NIR_2663	chr11	23446881	23447775	-	23446876	23447775	A3SS	ENSMUST00000109539.8	known	0.89	166	21	166	21	y	0.93	53	4	53	4	y	0.88	115	16	115	16	y	0.95	55	3	55	3	y	0.85	88	16	88	16	y	0.84	118	22	118	22	y	0.84	94	18	94	18	y	0.89	109	13	109	13	y	0.033527339740492	2.8239820062917	up	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
known_NIR_2733	chr11	33105220	33106003	-	33104060	33106003	A3SS	ENSMUST00000075641.10	known	0.11	59	489	59	489	y	0.11	25	193	25	193	y	0.09	55	538	55	538	y	0.12	24	181	24	181	y	0.08	33	392	33	392	y	0.06	36	549	36	549	y	0.09	47	466	47	466	y	0.08	56	662	56	662	y	0.0150107166402726	3.3717089216941	up	ENSMUSG00000057113.14	Npm1	chr11	protein_coding	nucleophosmin 1
known_NIR_2808	chr11	4824103;4833253	4832901;4833368	+	4824103	4833368	cassetteExon	ENSMUST00000038570.9	known	0.06	25.0	377	0;50	377	n	0.11	9.5	76	2;17	76	y	0.06	20.5	334	4;37	334	y	0.13	15.5	102	0;31	102	n	0.03	9.5	336	0;19	336	n	0.02	12.0	471	0;24	471	n	0.02	8.0	325	0;16	325	n	0.04	15.0	395	0;30	395	n	0.0348175284979514	3.39161723734601	up	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2835	chr11	50067713	50073319	+	50067713	50068503	3pMXE	ENSMUST00000143480.2	known	1.00	23	0	23	0	n	1.00	3	0	3	0	n	0.91	31	3	31	3	y	1.00	11	0	11	0	n	0.96	25	1	25	1	n	0.86	25	4	25	4	y	0.85	22	4	22	4	y	0.90	19	2	19	2	y	0.0451209950050944	2.52953038828156	up	ENSMUSG00000020381.11	Mrnip	chr11	protein_coding	MRN complex interacting protein
known_NIR_2863	chr11	5049477	5049748	+	5049566	5049748	A5SS	ENSMUST00000101610.10	known	0.11	6	47	6	47	y	0.14	3	19	3	19	y	0.12	5	37	5	37	y	0.08	2	22	2	22	y	0.04	1	27	1	27	n	0.08	4	46	4	46	y	0.00	0	42	0	42	n	0.03	1	35	1	35	n	0.0125505600766787	3.62033094019108	up	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2997	chr11	59645935	59648350	+	59645935	59655206	A3SS	ENSMUST00000072031.13	known	0.03	7	253	7	253	y	0.04	5	122	5	122	y	0.04	10	215	10	215	y	0.02	2	124	2	124	y	0.01	1	116	1	116	n	0.01	3	197	3	197	y	0.02	3	168	3	168	y	0.01	1	182	1	182	n	0.0166979601915548	3.70328039909021	up	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_3069	chr11	6216917	6217418	-	6216971	6217418	A3SS	ENSMUST00000004507.11	known	0.07	6	79	6	79	y	0.06	3	51	3	51	y	0.05	4	80	4	80	y	0.05	2	42	2	42	y	0.00	0	61	0	61	n	0.00	0	72	0	72	n	0.03	2	59	2	59	y	0.02	1	53	1	53	n	0.00370316011371883	5.05756338254115	up	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
known_NIR_3094	chr11	62424780;62425048	62424872;62427108	-	62424780	62427108	cassetteExon	ENSMUST00000018653.8	known	0.02	2.0	104	4;0	104	n	0.07	2.5	31	3;2	31	y	0.04	4.0	95	6;2	95	y	0.05	1.5	29	3;0	29	n	0.02	1.5	60	2;1	60	n	0.01	1.5	116	1;2	116	n	0.01	1.0	73	2;0	73	n	0.01	0.5	89	0;1	89	n	0.0486576625012574	3.03614588222994	up	ENSMUSG00000018509.9	Cenpv	chr11	protein_coding	centromere protein V
known_NIR_3106	chr11	6339513	6345125	+	6339140	6345125	A5SS	ENSMUST00000109787.8	known	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	13	0	13	0	n	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.79	11	3	11	3	y	0.33	1	2	1	2	n	0.44	4	5	4	5	n	0.0476373393569801	2.59585875875269	up	ENSMUSG00000041164.16	Zmiz2	chr11	protein_coding	zinc finger, MIZ-type containing 2
known_NIR_3128	chr11	68713491;68717030	68716996;68720741	-	68713491	68720741	cassetteExon	ENSMUST00000018880.14	known	0.29	15.0	36	14;16	36	y	0.36	13.0	23	11;15	23	y	0.29	17.0	42	17;17	42	y	0.20	8.5	34	7;10	34	y	0.18	5.5	25	5;6	25	y	0.09	6.5	65	6;7	65	y	0.11	6.0	48	4;8	48	y	0.15	9.0	50	7;11	50	y	0.0107858040879469	3.96237579501595	up	ENSMUSG00000018736.15	Ndel1	chr11	protein_coding	nudE neurodevelopment protein 1 like 1
known_NIR_3135	chr11	68989834	68991335	+	68986129	68991335	A5SS	ENSMUST00000101004.9	known	0.31	4	9	4	9	y	0.17	2	10	2	10	y	0.27	4	11	4	11	y	0.29	2	5	2	5	n	0.22	2	7	2	7	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.0264192709301483	3.13774673061013	up	ENSMUSG00000020893.18	Per1	chr11	protein_coding	period circadian clock 1
known_NIR_3240	chr11	70540172	70540271	+	70540120	70540271	A5SS	ENSMUST00000141695.8	known	0.99	126	1	126	1	n	1.00	42	0	42	0	n	0.99	101	1	101	1	n	0.95	58	3	58	3	y	0.94	98	6	98	6	y	0.94	148	9	148	9	y	0.95	117	6	117	6	y	0.95	124	7	124	7	y	0.0388506763095764	3.27326835353988	up	ENSMUSG00000040746.16	Rnf167	chr11	protein_coding	ring finger protein 167
known_NIR_3309	chr11	74540520;74540944	74540916;74547249	+	74540520	74547249	cassetteExon	ENSMUST00000117818.2	known	0.04	7.5	163	5;10	163	y	0.07	5.0	67	3;7	67	y	0.05	5.5	96	1;10	96	n	0.03	2.5	92	0;5	92	n	0.01	1.0	72	0;2	72	n	0.01	1.5	123	0;3	123	n	0.04	3.5	77	0;7	77	n	0.02	2.5	142	0;5	142	n	0.0491582347608026	2.48043189240934	up	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
known_NIR_3412	chr11	78858859	78862143	-	78858859	78860540	5pMXE	ENSMUST00000140073.2	known	0.92	1353	115	1353	115	y	0.92	725	62	725	62	y	0.90	1137	120	1137	120	y	0.92	701	62	701	62	y	0.89	847	108	847	108	y	0.89	1219	152	1219	152	y	0.89	967	118	967	118	y	0.91	1243	116	1243	116	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000001123.16	Lgals9	chr11	protein_coding	lectin, galactose binding, soluble 9
known_NIR_3415	chr11	79132982	79133325	-	79132982	79135289	A5SS	ENSMUST00000017821.12	known	0.50	29	29	29	29	y	0.53	9	8	9	8	y	0.52	30	28	30	28	y	0.37	11	19	11	19	y	0.40	14	21	14	21	y	0.28	10	26	10	26	y	0.33	9	18	9	18	y	0.27	28	77	28	77	y	0.0163547376845382	3.36067220166722	up	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3417	chr11	79132982;79134401	79134226;79135289	-	79132982	79135289	cassetteExon	ENSMUST00000017821.12	known	0.61	45.0	29	6;84	29	y	0.74	22.5	8	5;40	8	y	0.61	44.0	28	6;82	28	y	0.54	22.0	19	2;42	19	y	0.45	17.5	21	3;32	21	y	0.37	15.5	26	2;29	26	y	0.43	13.5	18	0;27	18	n	0.34	39.0	77	8;70	77	y	0.00566063027481651	4.64584116592567	up	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3477	chr11	83873133;83876377	83876075;83877640	+	83873133	83877640	cassetteExon	ENSMUST00000049714.15	known	0.93	12.5	1	11;14	1	n	0.91	10.0	1	13;7	1	n	0.85	11.5	2	14;9	2	y	1.00	9.0	0	9;9	0	n	0.62	5.0	3	6;4	3	y	0.71	15.0	6	10;20	6	y	0.82	9.0	2	6;12	2	y	0.61	11.0	7	10;12	7	y	0.00979160562986093	4.02324809887831	up	ENSMUSG00000034940.16	Synrg	chr11	protein_coding	synergin, gamma
known_NIR_3500	chr11	85250505;85251888	85251850;85256378	+	85250505	85256378	cassetteExon	ENSMUST00000108056.8	known	0.11	3.5	29	2;5	29	y	0.11	1.0	8	0;2	8	n	0.04	1.5	35	2;1	35	n	0.14	3.0	19	3;3	19	y	0.00	0.0	11	0;0	11	n	0.02	0.5	32	0;1	32	n	0.00	0.0	5	0;0	5	n	0.06	1.5	22	1;2	22	n	0.0242242264710587	3.13785816221094	up	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3534	chr11	87965551	87966999	+	87965551	87967017	A3SS	ENSMUST00000018521.11	known	0.14	4	24	4	24	y	0.16	3	16	3	16	y	0.19	5	21	5	21	y	0.27	3	8	3	8	y	0.06	1	17	1	17	n	0.11	2	17	2	17	y	0.00	0	8	0	8	n	0.14	3	19	3	19	y	0.0364931265174637	2.68447493822352	up	ENSMUSG00000018377.11	Vezf1	chr11	protein_coding	vascular endothelial zinc finger 1
known_NIR_3556	chr11	94002972;94004127	94004089;94004999	+	94002972	94004999	cassetteExon	ENSMUST00000041956.14	known	0.13	13.0	84	14;12	84	y	0.33	14.0	28	14;14	28	y	0.21	23.0	87	22;24	87	y	0.26	13.5	39	13;14	39	y	0.09	4.5	43	7;2	43	y	0.08	6.5	70	8;5	70	y	0.09	6.0	60	4;8	60	y	0.04	4.0	109	5;3	109	y	0.0288327015432247	3.59951030401732	up	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
known_NIR_3678	chr12	101914304	101914534	-	101914307	101914534	A3SS	ENSMUST00000021606.12	known	0.24	5	16	5	16	y	0.17	2	10	2	10	y	0.27	3	8	3	8	y	0.19	3	13	3	13	y	0.00	0	6	0	6	n	0.13	3	20	3	20	y	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.0180918079117368	3.4701687563303	up	ENSMUSG00000021189.12	Atxn3	chr12	protein_coding	ataxin 3
known_NIR_3681	chr12	102292171	102292593	+	102292171	102317141	A3SS	ENSMUST00000056950.14	known	0.04	1	25	1	25	n	0.14	2	12	2	12	y	0.11	3	25	3	25	y	0.14	2	12	2	12	y	0.00	0	25	0	25	n	0.03	1	30	1	30	n	0.06	1	15	1	15	n	0.05	1	20	1	20	n	0.0464485437869575	2.68105094842194	up	ENSMUSG00000044456.17	Rin3	chr12	protein_coding	Ras and Rab interactor 3
known_NIR_3872	chr12	24555033	24559453	+	24555033;24559180	24559083;24559453	ES	ENSMUST00000075954.9	known	0.39	7	11.0	7	11;11	y	0.40	2	3.0	2	0;6	n	0.14	2	12.0	2	9;15	y	0.33	1	2.0	1	1;3	n	0.00	0	8.5	0	6;11	n	0.18	1	4.5	1	4;5	n	0.00	0	7.5	0	5;10	n	0.22	2	7.0	2	4;10	y	0.0428307123157093	2.56212744441414	up	ENSMUSG00000059669.9	Taf1b	chr12	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, B
known_NIR_3889	chr12	30947805	30954869	-	30947805	30954717	A5SS	ENSMUST00000219697.2	known	0.52	117	109	117	109	y	0.62	57	35	57	35	y	0.48	99	109	99	109	y	0.57	62	47	62	47	y	0.44	67	85	67	85	y	0.42	107	147	107	147	y	0.46	92	106	92	106	y	0.47	114	130	114	130	y	0.0393011896644015	3.09220843218044	up	ENSMUSG00000044573.17	Acp1	chr12	protein_coding	acid phosphatase 1, soluble
known_NIR_4014	chr12	64969542	64970281	+	64969188	64970281	A5SS	ENSMUST00000058135.6	known	0.55	6	5	6	5	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.0163143704752582	3.44090623658256	up	ENSMUSG00000047227.6	Gm527	chr12	protein_coding	predicted gene 527
known_NIR_4022	chr12	65102094;65102307	65102208;65102412	+	65102094	65102412	cassetteExon	ENSMUST00000120580.8	known	0.31	7.5	17	9;6	17	y	0.52	5.5	5	5;6	5	y	0.30	10.5	24	12;9	24	y	0.60	7.5	5	11;4	5	y	0.16	3.0	16	5;1	16	n	0.11	3.5	27	7;0	27	n	0.22	4.0	14	4;4	14	y	0.24	7.0	22	6;8	22	y	0.0379866757383019	3.08606699924184	up	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4107	chr12	76812412	76822368	+	76812412;76820167	76820032;76822368	ES	ENSMUST00000041262.14	known	0.10	27	244.5	27	263;226	y	0.12	24	175.0	24	196;154	y	0.09	27	280.0	27	277;283	y	0.14	23	141.5	23	152;131	y	0.05	11	203.0	11	229;177	y	0.07	19	263.5	19	299;228	y	0.07	17	226.5	17	230;223	y	0.10	29	255.0	29	282;228	y	0.0386139762132636	2.64231303630326	up	ENSMUSG00000090258.8	Churc1	chr12	protein_coding	churchill domain containing 1
known_NIR_4126	chr12	80215790;80217022	80216957;80218503	-	80215790;80217540	80217460;80218503	MXE	ENSMUST00000021554.16	known	0.12	7.5	54.0	6;9	43;65	y	0.14	4.5	27.5	9;0	21;34	n	0.10	6.0	51.5	6;6	54;49	y	0.11	4.0	31.0	4;4	25;37	y	0.05	1.5	30.0	2;1	24;36	n	0.00	0.0	69.0	0;0	63;75	n	0.08	4.5	48.5	6;3	42;55	y	0.06	4.5	74.5	4;5	69;80	y	0.0178402678143292	3.67658012007223	up	ENSMUSG00000015143.16	Actn1	chr12	protein_coding	actinin, alpha 1
known_NIR_4230	chr12	84820451	84821317	+	84820682	84821317	5pMXE	ENSMUST00000220726.2	known	0.48	80	85	80	85	y	0.58	44	32	44	32	y	0.47	85	96	85	96	y	0.56	48	38	48	38	y	0.43	54	71	54	71	y	0.49	99	101	99	101	y	0.39	54	86	54	86	y	0.40	55	83	55	83	y	0.0392920379478363	2.65619551103338	up	ENSMUSG00000021241.8	Isca2	chr12	protein_coding	iron-sulfur cluster assembly 2
known_NIR_4351	chr13	103900514	103900804	-	103900514	103905825	A5SS	ENSMUST00000074616.7	known	0.54	14	12	14	12	y	0.57	8	6	8	6	y	0.69	20	9	20	9	y	0.36	4	7	4	7	y	0.25	3	9	3	9	y	0.21	4	15	4	15	y	0.46	6	7	6	7	y	0.30	7	16	7	16	y	0.0379178575347656	2.6853489569653	up	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
known_NIR_4359	chr13	104172231	104172962	-	104172231	104173362	A5SS	ENSMUST00000109315.5	known	0.25	26	80	26	80	y	0.20	9	37	9	37	y	0.30	31	72	31	72	y	0.30	21	48	21	48	y	0.18	10	47	10	47	y	0.19	19	82	19	82	y	0.18	16	72	16	72	y	0.16	12	64	12	64	y	0.0339173700307576	3.43451865147752	up	ENSMUSG00000021710.12	Nln	chr13	protein_coding	neurolysin (metallopeptidase M3 family)
known_NIR_4490	chr13	21580744	21586562	-	21580744	21586842	A5SS	ENSMUST00000116434.11	known	0.32	11	23	11	23	y	0.30	3	7	3	7	y	0.27	6	16	6	16	y	0.24	4	13	4	13	y	0.20	3	12	3	12	y	0.18	3	14	3	14	y	0.16	3	16	3	16	y	0.17	5	24	5	24	y	0.00448361750502566	5.3923022056375	up	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4502	chr13	23999256;24001590	24001504;24003001	+	23999256	24003001	cassetteExon	ENSMUST00000141717.8	known	0.77	311.0	92	284;338	92	y	0.81	173.5	42	171;176	42	y	0.75	300.5	98	268;333	98	y	0.85	126.0	22	127;125	22	y	0.76	260.0	82	243;277	82	y	0.70	392.5	172	386;399	172	y	0.65	294.0	161	263;325	161	y	0.66	349.5	182	329;370	182	y	0.0223262721678518	3.07020654424081	up	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4515	chr13	24601407	24612812	+	24601407;24606674	24606583;24612812	ES	ENSMUST00000224953.2	known	0.03	2	68.0	2	69;67	y	0.03	1	30.5	1	27;34	n	0.04	2	52.0	2	57;47	y	0.02	1	48.0	1	58;38	n	0.00	0	52.0	0	57;47	n	0.02	2	81.0	2	99;63	y	0.00	0	43.0	0	42;44	n	0.01	1	66.5	1	74;59	n	0.0121941868183737	3.57623736407562	up	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4530	chr13	25064904;25066662	25066524;25067724	+	25064904	25067724	cassetteExon	ENSMUST00000141572.8	known	1.00	7.5	0	8;7	0	n	1.00	1.0	0	1;1	0	n	1.00	5.5	0	8;3	0	n	-	-	-	-	-	-	0.64	3.5	2	2;5	2	n	0.76	12.5	4	9;16	4	y	0.88	7.5	1	6;9	1	n	0.91	10.0	1	8;12	1	n	0.0463460512186156	3.28228563881609	up	ENSMUSG00000006711.16	D130043K22Rik	chr13	protein_coding	RIKEN cDNA D130043K22 gene
known_NIR_4544	chr13	34115629	34119552	-	34115629	34180226	A5SS	ENSMUST00000076532.14	known	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.29	4	10	4	10	y	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.0262257147692119	4.10146613683877	up	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4777	chr13	56243454	56243937	-	56237670	56243937	A3SS	ENSMUST00000016081.13	known	0.14	12	74	12	74	y	0.19	15	66	15	66	y	0.10	11	104	11	104	y	0.12	9	64	9	64	y	0.05	6	111	6	111	y	0.09	14	145	14	145	y	0.07	7	94	7	94	y	0.09	11	118	11	118	y	0.0394530499292657	2.89966752385147	up	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4784	chr13	58308052	58311247	+	58308052;58310695	58310652;58311247	ES	ENSMUST00000051490.15	known	0.59	90	63.0	90	64;62	y	0.61	39	24.5	39	20;29	y	0.55	100	81.0	100	77;85	y	0.72	59	22.5	59	21;24	y	0.50	64	65.0	64	73;57	y	0.47	88	98.0	88	91;105	y	0.50	85	83.5	85	85;82	y	0.49	86	90.0	86	85;95	y	0.0368216192687101	3.44102712548164	up	ENSMUSG00000050002.15	Idnk	chr13	protein_coding	idnK gluconokinase homolog (E. coli)
known_NIR_4923	chr13	67111535;67112272	67112138;67114454	+	67111535	67114454	cassetteExon	ENSMUST00000021990.4	known	0.02	3.0	132	3;3	132	y	0.01	1.0	73	0;2	73	n	0.01	1.5	165	0;3	165	n	0.01	1.0	92	2;0	92	n	0.00	0.0	107	0;0	107	n	0.00	0.0	213	0;0	213	n	0.00	0.5	122	0;1	122	n	0.00	0.0	141	0;0	141	n	0.0153924380733023	5	up	ENSMUSG00000021518.5	Ptdss1	chr13	protein_coding	phosphatidylserine synthase 1
known_NIR_4971	chr13	74631062;74632141	74632018;74641969	-	74631062	74641969	cassetteExon	ENSMUST00000202645.4	known	0.71	36.0	15	28;44	15	y	0.70	16.0	7	9;23	7	y	0.76	35.0	11	20;50	11	y	0.78	25.0	7	9;41	7	y	0.67	22.5	11	14;31	11	y	0.68	31.5	15	14;49	15	y	0.62	19.5	12	8;31	12	y	0.68	19.5	9	9;30	9	y	0.0229733350856559	3.11644512478999	up	ENSMUSG00000069208.10	Zfp825	chr13	protein_coding	zinc finger protein 825
known_NIR_5000	chr13	84370553	84405880	+	84370553;84399452	84399349;84405880	ES	ENSMUST00000224501.2	known	0.23	5	16.5	5	13;20	y	0.27	3	8.0	3	7;9	y	0.17	2	9.5	2	8;11	y	0.25	2	6.0	2	7;5	y	0.00	0	6.5	0	6;7	n	0.17	2	10.0	2	10;10	y	0.13	1	6.5	1	7;6	n	0.12	1	7.5	1	9;6	n	0.033392007673239	2.93948175626108	up	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
known_NIR_5006	chr13	85345680	85350560	+	85345680	85350452	A3SS	ENSMUST00000022030.11	known	0.12	8	60	8	60	y	0.15	4	23	4	23	y	0.13	7	45	7	45	y	0.12	3	21	3	21	y	0.06	2	34	2	34	y	0.10	7	62	7	62	y	0.11	4	32	4	32	y	0.05	3	55	3	55	y	0.0340189121683635	3.06186217847897	up	ENSMUSG00000021548.11	Ccnh	chr13	protein_coding	cyclin H
known_NIR_5009	chr13	8911301	8920673	-	8911301	8921519	A5SS	ENSMUST00000054251.13	known	0.70	7	3	7	3	y	0.57	4	3	4	3	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.38	3	5	3	5	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.0358018448354664	2.70305244682777	up	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
known_NIR_5034	chr13	93311226	93312027	-	93311214	93312027	A3SS	ENSMUST00000225868.2	known	0.69	44	20	44	20	y	0.61	14	9	14	9	y	0.68	44	21	44	21	y	0.66	19	10	19	10	y	0.56	35	27	35	27	y	0.61	59	37	59	37	y	0.46	26	31	26	31	y	0.58	45	33	45	33	y	0.0367714850653204	2.90125816462178	up	ENSMUSG00000042167.7	Tent2	chr13	protein_coding	terminal nucleotidyltransferase 2
known_NIR_5131	chr14	121823754	121828723	-	121823754	121829224	A5SS	ENSMUST00000211803.2	known	0.17	1	5	1	5	n	0.22	2	7	2	7	n	0.31	5	11	5	11	y	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.0436198210420957	2.66821121742847	up	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5132	chr14	121823754;121828766	121828723;121831748	-	121823754;121829360	121829224;121831748	MXE	ENSMUST00000040700.9	known	0.29	2.0	5.0	1;3	5;5	n	0.20	1.0	4.0	2;0	7;1	n	0.29	3.5	8.5	5;2	11;6	y	0.25	1.0	3.0	2;0	5;1	n	0.00	0.0	3.5	0;0	5;2	n	0.11	1.0	8.5	2;0	9;8	n	0.17	0.5	2.5	1;0	5;0	n	0.00	0.0	3.5	0;0	5;2	n	0.0135670501964999	3.96202907846531	up	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5138	chr14	123150704;123161089	123161034;123163542	+	123150704	123163542	cassetteExon	ENSMUST00000100291.3	known	0.85	11.5	2	11;12	2	y	1.00	3.5	0	3;4	0	n	0.90	9.0	1	7;11	1	n	0.75	3.0	1	2;4	1	n	0.67	4.0	2	5;3	2	y	0.79	7.5	2	8;7	2	y	0.75	9.0	3	8;10	3	y	0.60	7.5	5	5;10	5	y	0.0438003249543361	2.57207363046575	up	ENSMUSG00000075463.4	4930594M22Rik	chr14	lncRNA	RIKEN cDNA 4930594M22 gene
known_NIR_5139	chr14	14211006	14212838	+	14210951	14212838	A5SS	ENSMUST00000164598.8	known	0.05	21	417	21	417	y	0.06	22	354	22	354	y	0.05	13	248	13	248	y	0.04	15	364	15	364	y	0.03	6	177	6	177	y	0.01	4	293	4	293	y	0.01	2	176	2	176	y	0.03	6	197	6	197	y	0.00686878756026516	4.24264068711929	up	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
known_NIR_5152	chr14	20344860;20347699	20347583;20350655	+	20344860	20350655	cassetteExon	ENSMUST00000022343.6	known	0.26	4.5	13	1;8	13	n	0.29	2.5	6	0;5	6	n	0.21	6.5	24	0;13	24	n	0.22	2.5	9	0;5	9	n	0.09	2.0	21	2;2	21	y	0.13	1.5	10	0;3	10	n	0.17	4.0	19	0;8	19	n	0.09	2.0	21	0;4	21	n	0.00334856070959807	4.69668218313862	up	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5173	chr14	20408208;20409984	20409823;20424398	+	20408208;20413518	20413331;20424398	MXE	ENSMUST00000051915.7	known	0.55	23.0	19.0	44;2	7;31	y	0.46	12.5	14.5	25;0	5;24	n	0.46	26.5	31.0	51;2	9;53	y	0.54	11.0	9.5	20;2	1;18	n	0.34	13.5	26.5	26;1	13;40	n	0.33	19.5	39.0	35;4	17;61	y	0.37	14.5	25.0	29;0	9;41	n	0.42	21.5	29.5	43;0	9;50	n	0.00545074881395641	4.31676926878399	up	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5222	chr14	21102768;21104084	21103790;21142435	+	21102768	21142435	cassetteExon	ENSMUST00000045376.11	known	0.14	54.5	347	102;7	347	y	0.16	34.5	178	65;4	178	y	0.14	51.0	306	93;9	306	y	0.14	34.5	212	64;5	212	y	0.10	27.5	247	47;8	247	y	0.10	35.5	325	65;6	325	y	0.13	35.0	238	64;6	238	y	0.13	45.5	306	82;9	306	y	0.0316858628534035	3	up	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5381	chr14	31818585	31821406	+	31818585	31821346	A3SS	ENSMUST00000022462.14	known	0.07	4	57	4	57	y	0.04	2	45	2	45	y	0.02	1	41	1	41	n	0.09	4	43	4	43	y	0.00	0	37	0	37	n	0.00	0	72	0	72	n	0.00	0	47	0	47	n	0.00	0	45	0	45	n	0.0384193972639982	3.53797136496472	up	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5407	chr14	33990909;33995533	33995444;34030997	-	33990909	34030997	cassetteExon	ENSMUST00000227375.2	known	0.62	6.5	4	12;1	4	n	0.62	8.0	5	16;0	5	n	0.60	9.0	6	11;7	6	y	0.53	4.5	4	8;1	4	n	0.22	2.0	7	4;0	7	n	0.16	2.5	13	5;0	13	n	0.50	2.0	2	4;0	2	n	0.20	2.0	8	2;2	8	y	0.0214405615613012	4.00332927259893	up	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5464	chr14	4198873	4199236	+	4198477	4199236	A5SS	ENSMUST00000147121.2	known	0.90	52	6	52	6	y	0.95	38	2	38	2	y	0.83	39	8	39	8	y	0.86	24	4	24	4	y	0.83	34	7	34	7	y	0.82	31	7	31	7	y	0.76	38	12	38	12	y	0.69	33	15	33	15	y	0.039436901101925	2.65490935614013	up	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5492	chr14	47710174;47738327	47738251;47766632	+	47710174	47766632	cassetteExon	ENSMUST00000043112.9	known	0.56	2.5	2	3;2	2	n	-	-	-	-	-	-	1.00	1.0	0	1;1	0	n	0.60	3.0	2	4;2	2	n	0.43	1.5	2	2;1	2	n	0.14	0.5	3	1;0	3	n	0.27	1.5	4	2;1	4	n	0.00	0.0	3	0;0	3	n	0.0436062873718011	3.03970177091896	up	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5677	chr14	55880412	55881054	-	55880412	55880839	A5SS	ENSMUST00000122358.8	known	0.45	9	11	9	11	y	0.64	9	5	9	5	y	0.50	8	8	8	8	y	0.46	6	7	6	7	y	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.18	2	9	2	9	y	0.43	6	8	6	8	y	0.0436740223254912	2.58734932471774	up	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5759	chr14	65054585	65059503	-	65054585	65063050	A5SS	ENSMUST00000022544.14	known	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.25	3	9	3	9	y	0.27	3	8	3	8	y	0.07	1	14	1	14	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	0.025760944203924	3.40046602172147	up	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5760	chr14	65061147	65063050	-	65054585	65063050	A3SS	ENSMUST00000022544.14	known	0.55	12	10	12	10	y	0.71	10	4	10	4	y	0.55	11	9	11	9	y	0.50	8	8	8	8	y	0.22	4	14	4	14	y	0.45	9	11	9	11	y	0.28	5	13	5	13	y	0.26	6	17	6	17	y	0.00705514957199482	4.02738614266017	up	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5793	chr14	69610570;69659448	69659347;69740431	-	69610570	69740431	cassetteExon	ENSMUST00000183917.8	known	0.80	8.0	2	1;15	2	n	1.00	4.5	0	0;9	0	n	0.67	2.0	1	0;4	1	n	1.00	2.0	0	0;4	0	n	0.33	0.5	1	0;1	1	n	0.45	2.5	3	1;4	3	n	0.67	6.0	3	3;9	3	y	0.56	2.5	2	1;4	2	n	0.0156919976264591	3.34888224283779	up	ENSMUSG00000093954.9	Gm16867	chr14	protein_coding	predicted gene, 16867
known_NIR_5837	chr14	73392334	73399380	+	73392334;73395885	73395828;73399380	ES	ENSMUST00000163339.8	known	0.96	56	2.5	56	4;1	n	0.98	22	0.5	22	0;1	n	0.91	46	4.5	46	3;6	y	0.92	30	2.5	30	3;2	y	0.88	40	5.5	40	5;6	y	0.90	49	5.5	49	7;4	y	0.88	32	4.5	32	4;5	y	0.91	36	3.5	36	4;3	y	0.0485630877002623	2.75589127304775	up	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5921	chr15	100367717	100370430	+	100367717;100369656	100369541;100370430	ES	ENSMUST00000037001.10	known	0.05	4	75.5	4	66;85	y	0.08	4	45.5	4	39;52	y	0.09	6	62.0	6	67;57	y	0.06	2	30.5	2	30;31	y	0.05	2	37.5	2	36;39	y	0.01	1	76.5	1	74;79	n	0.02	1	42.0	1	40;44	n	0.00	0	75.0	0	71;79	n	0.0128569226587943	3.53553390593274	up	ENSMUSG00000037353.10	Letmd1	chr15	protein_coding	LETM1 domain containing 1
known_NIR_5931	chr15	100573354	100576884	-	100573354	100579024	A5SS	ENSMUST00000230572.2	known	0.72	56	22	56	22	y	0.71	24	10	24	10	y	0.60	56	38	56	38	y	0.85	41	7	41	7	y	0.41	32	47	32	47	y	0.50	39	39	39	39	y	0.51	47	46	47	46	y	0.61	33	21	33	21	y	0.0188104144994021	3.24452690425629	up	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
known_NIR_5939	chr15	102086221	102087216	-	102086221;102087051	102086962;102087216	ES	ENSMUST00000023805.3	known	0.02	33	1858.0	33	1798;1918	y	0.03	19	608.0	19	607;609	y	0.01	12	1292.0	12	1207;1377	y	0.02	17	665.5	17	650;681	y	0.01	5	946.5	5	914;979	y	0.01	11	1680.0	11	1658;1702	y	0.01	9	962.0	9	960;964	y	0.00	8	1689.0	8	1667;1711	y	0.0478566196408534	2.61116483933547	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5940	chr15	102086221	102087216	-	102087051	102087216	3pMXE	ENSMUST00000230253.2	known	0.02	33	1918	33	1918	y	0.03	19	609	19	609	y	0.01	12	1377	12	1377	y	0.02	17	681	17	681	y	0.01	5	979	5	979	y	0.01	11	1702	11	1702	y	0.01	9	964	9	964	y	0.00	8	1711	8	1711	y	0.0478566196408534	2.61116483933547	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_6002	chr15	102396712	102398187	+	102396712	102397211	3pMXE	ENSMUST00000230129.2	known	0.07	44	613	44	613	y	0.07	22	285	22	285	y	0.08	54	638	54	638	y	0.07	22	274	22	274	y	0.05	28	484	28	484	y	0.06	44	676	44	676	y	0.06	33	556	33	556	y	0.06	53	790	53	790	y	0.00542395034130871	4.24264068711929	up	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6004	chr15	102396712	102398187	+	102396712;102397249	102397211;102398187	ES	ENSMUST00000077037.13	known	0.08	44	521.0	44	613;429	y	0.08	22	255.5	22	285;226	y	0.09	54	533.5	54	638;429	y	0.08	22	238.0	22	274;202	y	0.06	28	405.5	28	484;327	y	0.07	44	585.5	44	676;495	y	0.06	33	508.0	33	556;460	y	0.07	53	693.5	53	790;597	y	0.00395758466635652	4.58257569495584	up	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6082	chr15	25941036	25964310	+	25933712	25964310	A5SS	ENSMUST00000228327.2	known	0.27	17	45	17	45	y	0.58	34	25	34	25	y	0.33	15	30	15	30	y	0.49	19	20	19	20	y	0.15	5	29	5	29	y	0.19	8	35	8	35	y	0.12	3	22	3	22	y	0.24	15	47	15	47	y	0.0358162673661067	3.1939475650152	up	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6117	chr15	3301649	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	known	0.79	37	10	37	10	y	0.85	11	2	11	2	y	0.76	26	8	26	8	y	0.81	13	3	13	3	y	0.62	16	10	16	10	y	0.64	23	13	23	13	y	0.79	23	6	23	6	y	0.63	26	15	26	15	y	0.0375005473816871	2.98305669472241	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6121	chr15	3302287	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	known	0.81	43	10	43	10	y	0.83	10	2	10	2	y	0.76	25	8	25	8	y	0.82	14	3	14	3	y	0.58	14	10	14	10	y	0.71	32	13	32	13	y	0.68	13	6	13	6	y	0.67	31	15	31	15	y	0.00727046033851939	4.52903909476957	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6149	chr15	3487490	3611740	-	3487490	3612482	A5SS	ENSMUST00000069451.11	known	0.11	57	441	57	441	y	0.10	16	150	16	150	y	0.09	50	515	50	515	y	0.08	16	197	16	197	y	0.08	41	467	41	467	y	0.06	54	820	54	820	y	0.07	36	493	36	493	y	0.08	48	574	48	574	y	0.0340084674736242	2.79976957577215	up	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6165	chr15	36791232;36793922	36793723;36794389	-	36791232	36794389	cassetteExon	ENSMUST00000110361.8	known	1.00	68.0	0	126;10	0	n	0.96	44.0	2	82;6	2	y	0.97	69.5	2	129;10	2	y	1.00	52.5	0	96;9	0	n	0.94	30.0	2	56;4	2	y	0.93	65.0	5	127;3	5	y	0.97	32.5	1	64;1	1	n	0.94	63.0	4	124;2	4	y	0.032769048843692	2.78543007265578	up	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6166	chr15	36793922	36794389	-	36793919	36794389	A3SS	ENSMUST00000022894.14	known	0.42	10	14	10	14	y	0.40	6	9	6	9	y	0.42	10	14	10	14	y	0.53	9	8	9	8	y	0.36	4	7	4	7	y	0.27	3	8	3	8	y	0.11	1	8	1	8	n	0.11	2	17	2	17	y	0.0256034924782549	3.35044238735446	up	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6177	chr15	38514853	38518341	-	38514853	38519153	A5SS	ENSMUST00000065308.13	known	0.07	9	114	9	114	y	0.11	7	54	7	54	y	0.11	13	108	13	108	y	0.07	3	39	3	39	y	0.05	3	62	3	62	y	0.05	6	113	6	113	y	0.07	5	68	5	68	y	0.03	4	117	4	117	y	0.0337095521893971	2.82842712474619	up	ENSMUSG00000037458.16	Azin1	chr15	protein_coding	antizyme inhibitor 1
known_NIR_6205	chr15	44295904	44297297	+	44295904	44297250	A3SS	ENSMUST00000226355.2	known	0.91	39	4	39	4	y	0.89	17	2	17	2	y	0.84	36	7	36	7	y	0.94	16	1	16	1	n	0.73	19	7	19	7	y	0.73	30	11	30	11	y	0.81	22	5	22	5	y	0.58	28	20	28	20	y	0.0242482858571847	3.48145743447796	up	ENSMUSG00000022338.9	Eny2	chr15	protein_coding	ENY2 transcription and export complex 2 subunit
known_NIR_6336	chr15	75734330	75735158	+	75734330	75735254	A3SS	ENSMUST00000023238.6	known	0.01	2	160	2	160	y	0.02	2	115	2	115	y	0.03	5	156	5	156	y	0.03	4	115	4	115	y	0.00	0	84	0	84	n	0.01	1	111	1	111	n	0.00	0	66	0	66	n	0.01	1	88	1	88	n	0.0264653665333922	3.13049516849971	up	ENSMUSG00000022575.6	Gsdmd	chr15	protein_coding	gasdermin D
known_NIR_6441	chr15	76486787	76486991	-	76486848	76486991	A3SS	ENSMUST00000231042.2	known	0.07	3	40	3	40	y	0.07	1	14	1	14	n	0.07	3	41	3	41	y	0.04	1	22	1	22	n	0.03	1	33	1	33	n	0.00	0	34	0	34	n	0.05	2	36	2	36	y	0.02	1	40	1	40	n	0.0296651463644818	2.92306411107734	up	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6569	chr15	81695921	81699145	+	81687087	81699145	A5SS	ENSMUST00000109553.10	known	0.72	79	31	79	31	y	1.00	15	0	15	0	n	0.69	83	37	83	37	y	0.85	34	6	34	6	y	0.49	47	48	47	48	y	0.56	106	83	106	83	y	0.65	84	46	84	46	y	0.56	91	72	91	72	y	0.0302238059174238	3.20530382378016	up	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6571	chr15	81696492	81699145	+	81695921	81699145	A5SS	ENSMUST00000023024.8	known	0.18	17	79	17	79	y	0.25	5	15	5	15	y	0.16	16	83	16	83	y	0.24	11	34	11	34	y	0.10	5	47	5	47	y	0.17	22	106	22	106	y	0.05	4	84	4	84	y	0.12	12	91	12	91	y	0.0266440893033343	2.93141950921103	up	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6579	chr15	81883815;81886811	81886742;81887959	-	81883815	81887959	cassetteExon	ENSMUST00000146628.8	known	0.96	131.0	6	136;126	6	y	0.99	71.0	1	76;66	1	n	0.93	96.0	7	99;93	7	y	0.94	63.5	4	65;62	4	y	0.85	71.5	13	72;71	13	y	0.84	110.5	21	120;101	21	y	0.93	84.5	6	86;83	6	y	0.92	119.5	10	131;108	10	y	0.0497712014740383	2.6148057867317	up	ENSMUSG00000022472.17	Desi1	chr15	protein_coding	desumoylating isopeptidase 1
known_NIR_6602	chr15	82287297	82287920	-	82287539	82287920	3pMXE	ENSMUST00000230843.2	known	0.05	131	2657	131	2657	y	0.07	64	830	64	830	y	0.04	104	2801	104	2801	y	0.06	60	911	60	911	y	0.03	60	2115	60	2115	y	0.04	133	3310	133	3310	y	0.03	108	3045	108	3045	y	0.04	91	2450	91	2450	y	0.0453983125632167	2.82842712474619	up	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6605	chr15	82287297;82288107	82287920;82290108	-	82287297;82289839	82287398;82290108	MXE	ENSMUST00000229911.2	known	0.03	67.0	2365.5	131;3	2878;1853	y	0.04	32.0	690.0	64;0	763;617	n	0.03	55.5	2160.0	104;7	2667;1653	y	0.04	33.0	806.0	60;6	902;710	y	0.02	30.5	1751.0	60;1	2017;1485	n	0.02	69.5	2772.5	133;6	3310;2235	y	0.02	54.0	2503.5	108;0	3210;1797	n	0.02	45.5	2046.5	91;0	2366;1727	n	0.013846832988859	5.19615242270663	up	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6628	chr15	82575795;82576244	82576073;82577014	-	82575795	82577014	cassetteExon	ENSMUST00000100380.5	known	0.30	25.5	59	9;42	59	y	0.36	5.0	9	2;8	9	y	0.24	20.0	63	7;33	63	y	0.42	15.5	21	6;25	21	y	0.11	12.5	106	5;20	106	y	0.14	19.0	118	7;31	118	y	0.18	18.5	85	6;31	85	y	0.16	13.5	71	2;25	71	y	0.0125978256775498	4.39673947567156	up	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
known_NIR_6644	chr15	83050407	83056313	-	83050407	83054338	5pMXE	ENSMUST00000162834.3	known	0.99	614	8	614	8	y	1.00	173	0	173	0	n	0.99	493	6	493	6	y	0.99	192	1	192	1	n	0.97	572	15	572	15	y	0.99	793	10	793	10	y	0.97	622	20	622	20	y	0.98	700	11	700	11	y	0.0435576347221585	2.77746029931763	up	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
known_NIR_6815	chr15	99291264	99299461	+	99298088	99299461	A5SS&ES	ENSMUST00000161778.8	known	0.93	14	1	14	1	n	1.00	17	0	17	0	n	1.00	23	0	23	0	n	1.00	12	0	12	0	n	0.89	16	2	16	2	y	0.86	12	2	12	2	y	0.89	8	1	8	1	n	0.95	37	2	37	2	y	0.0164963200916035	3.3023719320147	up	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6874	chr16	14008096	14009454	+	14008096	14010206	A3SS	ENSMUST00000117958.8	known	0.78	7	2	7	2	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.75	6	2	6	2	n	0.50	4	4	4	4	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.0332382009677213	2.7516077481871	up	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6879	chr16	15374407	15398923	-	15374407;15395004	15394879;15398923	ES	ENSMUST00000229859.2	known	0.14	13	81.0	13	79;83	y	0.16	11	57.5	11	59;56	y	0.17	18	90.5	18	88;93	y	0.12	6	43.5	6	42;45	y	0.11	7	54.5	7	55;54	y	0.13	13	84.5	13	81;88	y	0.11	8	67.0	8	68;66	y	0.08	7	78.5	7	74;83	y	0.0386139762132635	2.64231303630327	up	ENSMUSG00000022674.16	Ube2v2	chr16	protein_coding	ubiquitin-conjugating enzyme E2 variant 2
known_NIR_6988	chr16	18230707	18245106	-	18230707	18232016	5pMXE	ENSMUST00000165430.8	known	0.94	292	20	292	20	y	0.98	92	2	92	2	y	0.76	272	84	272	84	y	0.92	88	8	88	8	y	0.34	262	513	262	513	y	0.30	296	687	296	687	y	0.22	238	837	238	837	y	0.42	230	321	230	321	y	0.000112123998067036	9.09512569871411	up	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
known_NIR_7049	chr16	20547683	20547814	-	20547596	20547814	A3SS	ENSMUST00000115437.4	known	0.02	2	97	2	97	y	0.04	2	53	2	53	y	0.02	2	92	2	92	y	0.01	1	66	1	66	n	0.00	0	65	0	65	n	0.01	1	88	1	88	n	0.00	0	58	0	58	n	0.00	0	95	0	95	n	0.0428004269752684	2.95419578350399	up	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
known_NIR_7055	chr16	20555192	20555659	+	20555133	20555659	A5SS	ENSMUST00000115423.8	known	0.12	4	30	4	30	y	0.13	2	13	2	13	y	0.18	6	28	6	28	y	0.08	1	12	1	12	n	0.07	2	27	2	27	y	0.05	2	37	2	37	y	0.05	1	18	1	18	n	0.00	0	17	0	17	n	0.017818081315094	3.34471176249816	up	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7069	chr16	21621847	21627428	+	21625869	21627428	A5SS&ES	ENSMUST00000211443.2	known	0.42	5	7	5	7	y	0.75	3	1	3	1	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	0.62	5	3	5	3	n	0.18	2	9	2	9	y	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.0273208914315305	2.91307037322862	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7124	chr16	23109388	23136314	+	23075851	23136314	A5SS	ENSMUST00000023601.14	known	0.86	190	32	190	32	y	0.95	278	14	278	14	y	0.81	110	25	110	25	y	0.94	346	22	346	22	y	0.71	42	17	42	17	y	0.68	71	34	71	34	y	0.67	36	18	36	18	y	0.81	97	23	97	23	y	0.00977909425907931	3.72927574278511	up	ENSMUSG00000022885.17	St6gal1	chr16	protein_coding	beta galactoside alpha 2,6 sialyltransferase 1
known_NIR_7145	chr16	29407177;29407694	29407641;29408499	+	29407177	29408499	cassetteExon	ENSMUST00000160597.8	known	0.37	30.5	51	32;29	51	y	0.40	15.5	23	12;19	23	y	0.38	24.0	40	25;23	40	y	0.32	12.5	27	13;12	27	y	0.31	18.5	42	17;20	42	y	0.24	30.0	94	28;32	94	y	0.35	29.0	53	30;28	53	y	0.28	30.0	77	21;39	77	y	0.0492255659539388	2.51461891161995	up	ENSMUSG00000038084.17	Opa1	chr16	protein_coding	OPA1, mitochondrial dynamin like GTPase
known_NIR_7180	chr16	32066343	32070641	+	32066085	32070641	A5SS	ENSMUST00000141820.8	known	0.55	11	9	11	9	y	0.78	7	2	7	2	n	0.68	19	9	19	9	y	0.67	6	3	6	3	n	0.50	3	3	3	3	n	0.44	11	14	11	14	y	0.45	5	6	5	6	y	0.44	8	10	8	10	y	0.0160987493629712	4.31707601436939	up	ENSMUSG00000022787.11	Wdr53	chr16	protein_coding	WD repeat domain 53
known_NIR_7261	chr16	3717832	3718557	+	3717832	3729315	A3SS	ENSMUST00000176233.2	known	0.86	24	4	24	4	y	1.00	2	0	2	0	n	0.88	21	3	21	3	y	0.88	7	1	7	1	n	0.75	15	5	15	5	y	0.83	30	6	30	6	y	0.84	21	4	21	4	y	0.77	20	6	20	6	y	0.0370737299526712	2.7622429735347	up	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
known_NIR_7281	chr16	4311744	4314269	-	4311744	4359544	A5SS	ENSMUST00000133440.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.90	26	3	26	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.0334754167131482	19	up	ENSMUSG00000022519.15	Srl	chr16	protein_coding	sarcalumenin
known_NIR_7349	chr16	46269331	46274987	-	46258431	46274987	A3SS	ENSMUST00000023335.13	known	0.79	151	39	151	39	y	0.88	35	5	35	5	y	0.80	138	35	138	35	y	0.92	56	5	56	5	y	0.67	69	34	69	34	y	0.73	128	47	128	47	y	0.69	94	43	94	43	y	0.83	172	35	172	35	y	0.0488165156218414	2.47368421052632	up	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
known_NIR_7381	chr16	49727175	49731232	+	49727175	49728417	A3SS&ES	ENSMUST00000230281.2	known	0.61	191	124	191	124	y	0.62	122	76	122	76	y	0.62	209	127	209	127	y	0.67	108	54	108	54	y	0.53	102	92	102	92	y	0.61	157	99	157	99	y	0.55	126	103	126	103	y	0.57	164	126	164	126	y	0.0261194313434527	2.98240454031731	up	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7511	chr16	91468353	91468836	+	91468353	91471583	A3SS	ENSMUST00000140312.8	known	0.60	15	10	15	10	y	0.65	17	9	17	9	y	0.58	7	5	7	5	y	0.53	8	7	8	7	y	0.33	5	10	5	10	y	0.15	2	11	2	11	y	0.44	4	5	4	5	n	0.15	2	11	2	11	y	0.0152487332366916	4.26305570867256	up	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7515	chr16	91470910	91471583	+	91468353	91471583	A5SS	ENSMUST00000140312.8	known	0.29	4	10	4	10	y	0.36	5	9	5	9	y	0.55	6	5	6	5	y	0.36	4	7	4	7	y	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.0136418953206626	3.45825233354277	up	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7543	chr16	93574381;93577335	93577261;93577645	+	93574381	93577645	cassetteExon	ENSMUST00000045004.11	known	0.03	1.5	57	3;0	57	n	0.03	1.0	29	0;2	29	n	0.06	3.5	52	5;2	52	y	0.04	1.5	37	3;0	37	n	0.01	0.5	46	1;0	46	n	0.01	0.5	75	0;1	75	n	0.02	1.5	59	0;3	59	n	0.03	2.0	69	1;3	69	n	0.0439153235056009	2.63493019696104	up	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7786	chr17	25488453	25491512	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.45	9	11	9	11	y	0.60	3	2	3	2	n	0.50	8	8	8	8	y	0.57	4	3	4	3	n	0.33	4	8	4	8	y	0.52	15	14	15	14	y	0.33	4	8	4	8	y	0.27	4	11	4	11	y	0.0471954414451488	2.61391895404692	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7790	chr17	25488453	25492295	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.89	89	11	89	11	y	0.96	45	2	45	2	y	0.92	90	8	90	8	y	0.94	51	3	51	3	y	0.85	47	8	47	8	y	0.87	97	14	97	14	y	0.87	52	8	52	8	y	0.87	75	11	75	11	y	0.0196035144559877	3.96942093018723	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7794	chr17	25488453	25492456	-	25488453	25493136	A5SS	ENSMUST00000173713.8	known	0.17	11	55	11	55	y	0.21	4	15	4	15	y	0.19	8	35	8	35	y	0.15	4	23	4	23	y	0.04	2	47	2	47	y	0.03	2	73	2	73	y	0.10	4	38	4	38	y	0.14	7	42	7	42	y	0.0205486562816642	3.53746344753976	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7795	chr17	25488453	25492456	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.50	11	11	11	11	y	0.67	4	2	4	2	n	0.50	8	8	8	8	y	0.57	4	3	4	3	n	0.20	2	8	2	8	y	0.12	2	14	2	14	y	0.33	4	8	4	8	y	0.39	7	11	7	11	y	0.00872151498599057	4.09514179673961	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7852	chr17	26439554	26444902	-	26439554	26444886	A5SS	ENSMUST00000114988.8	known	0.13	10	68	10	68	y	0.25	7	21	7	21	y	0.19	12	51	12	51	y	0.24	7	22	7	22	y	0.04	2	51	2	51	y	0.07	6	81	6	81	y	0.00	0	37	0	37	n	0.08	7	77	7	77	y	0.00482497224695137	4.71832049171612	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7853	chr17	26439554	26462964	-	26439554	26444886	A5SS&ES	ENSMUST00000114988.8	known	0.39	44	68	44	68	y	0.47	19	21	19	21	y	0.32	24	51	24	51	y	0.35	12	22	12	22	y	0.16	10	51	10	51	y	0.28	31	81	31	81	y	0.14	6	37	6	37	y	0.23	23	77	23	77	y	0.00769755192199643	3.93182458062452	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7856	chr17	26439554	26462964	-	26439554;26444997	26444886;26462964	ES	ENSMUST00000234687.2	known	0.47	44	50.5	44	68;33	y	0.57	19	14.5	19	21;8	y	0.42	24	32.5	24	51;14	y	0.41	12	17.0	12	22;12	y	0.24	10	32.0	10	51;13	y	0.39	31	49.0	31	81;17	y	0.20	6	24.0	6	37;11	y	0.33	23	46.0	23	77;15	y	0.0206825895648541	3.14290591800098	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7857	chr17	26439554	26462980	-	26439554	26444886	A5SS&ES	ENSMUST00000234687.2	known	0.39	44	68	44	68	y	0.54	25	21	25	21	y	0.41	36	51	36	51	y	0.52	24	22	24	22	y	0.33	25	51	25	51	y	0.33	40	81	40	81	y	0.41	26	37	26	37	y	0.32	36	77	36	77	y	0.0454157500810256	2.7090349632099	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7896	chr17	27237144	27244311	+	27237144	27241225	3pMXE	ENSMUST00000142141.3	known	0.19	17	74	17	74	y	0.07	2	25	2	25	y	0.12	9	67	9	67	y	0.18	6	28	6	28	y	0.07	4	56	4	56	y	0.03	3	92	3	92	y	0.01	1	66	1	66	n	0.04	3	71	3	71	y	0.0271583915579246	3.34392257413628	up	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7939	chr17	28539830	28545126	+	28539830;28541745	28541620;28545126	ES	ENSMUST00000114803.9	known	0.28	8	20.5	8	31;10	y	0.44	4	5.0	4	7;3	y	0.25	6	18.0	6	27;9	y	0.53	5	4.5	5	7;2	y	0.18	3	14.0	3	19;9	y	0.11	4	31.0	4	38;24	y	0.13	3	19.5	3	26;13	y	0.21	6	23.0	6	31;15	y	0.0403043506528714	3.09728201711373	up	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7992	chr17	29257598;29258883	29258428;29259749	+	29257598	29259749	cassetteExon	ENSMUST00000130216.3	known	0.10	20.5	177	22;19	177	y	0.13	12.5	84	11;14	84	y	0.12	19.0	138	19;19	138	y	0.10	10.0	88	10;10	88	y	0.09	10.0	101	9;11	101	y	0.07	13.0	168	14;12	168	y	0.10	15.5	143	18;13	143	y	0.09	16.0	165	8;24	165	y	0.0444277767619923	2.55376959227625	up	ENSMUSG00000071172.14	Srsf3	chr17	protein_coding	serine and arginine-rich splicing factor 3
known_NIR_8025	chr17	30224282	30354297	+	30224282;30279824	30279784;30354297	ES	ENSMUST00000226208.3	known	0.16	26	134.5	26	123;146	y	0.20	19	74.0	19	66;82	y	0.18	24	109.5	24	96;123	y	0.28	22	55.5	22	49;62	y	0.17	14	67.0	14	62;72	y	0.13	15	102.0	15	91;113	y	0.10	7	66.5	7	56;77	y	0.10	13	111.0	13	97;125	y	0.0492949601209675	2.57307008361071	up	ENSMUSG00000044477.13	Zfand3	chr17	protein_coding	zinc finger, AN1-type domain 3
known_NIR_8066	chr17	31832267	31834448	-	31832267;31833544	31833503;31834448	ES	ENSMUST00000236853.2	known	0.60	872	590.0	872	548;632	y	0.64	387	221.5	387	204;239	y	0.58	828	595.0	828	551;639	y	0.63	429	253.5	429	230;277	y	0.51	558	527.0	558	482;572	y	0.53	845	761.5	845	699;824	y	0.54	656	559.5	656	527;592	y	0.57	1201	923.0	1201	880;966	y	0.00698980014083912	4.03299643453399	up	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8079	chr17	31870686;31871542	31871476;31873953	-	31870686	31873953	cassetteExon	ENSMUST00000014684.6	known	0.10	27.5	259	18;37	259	y	0.11	13.0	106	8;18	106	y	0.10	27.5	244	17;38	244	y	0.09	12.0	117	4;20	117	y	0.05	10.0	174	6;14	174	y	0.07	18.5	234	19;18	234	y	0.05	11.5	237	4;19	237	y	0.05	13.0	225	9;17	225	y	0.00051317340275143	6.97137002317335	up	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8094	chr17	32531347;32532236	32532079;32533085	-	32531347	32533085	cassetteExon	ENSMUST00000002699.7	known	0.28	16.5	42	14;19	42	y	0.21	5.5	21	3;8	21	y	0.22	13.0	47	7;19	47	y	0.19	6.0	25	6;6	25	y	0.21	7.5	29	3;12	29	y	0.10	5.5	50	1;10	50	n	0.14	5.0	31	5;5	31	y	0.06	4.0	61	0;8	61	n	0.0483705212229609	2.60773811234816	up	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8096	chr17	32535641	32537745	-	32536852	32537745	A3SS&ES	ENSMUST00000235205.2	known	0.07	4	54	4	54	y	0.09	3	30	3	30	y	0.04	1	23	1	23	n	0.03	1	28	1	28	n	0.00	0	26	0	26	n	0.00	0	46	0	46	n	0.00	0	24	0	24	n	0.04	2	46	2	46	y	0.0347630147577835	2.79130200918403	up	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8164	chr17	33865719	33867787	-	33865633	33867787	A3SS	ENSMUST00000148178.8	known	0.08	19	224	19	224	y	0.08	11	123	11	123	y	0.07	22	316	22	316	y	0.07	9	125	9	125	y	0.07	16	205	16	205	y	0.06	17	251	17	251	y	0.07	15	194	15	194	y	0.06	13	223	13	223	y	0.0498252627805766	2.44948974278318	up	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8297	chr17	35169451	35170861	-	35169451	35169674	5pMXE	ENSMUST00000174464.2	known	0.48	53	57	53	57	y	0.53	48	42	48	42	y	0.43	48	63	48	63	y	0.47	29	33	29	33	y	0.39	29	45	29	45	y	0.38	37	61	37	61	y	0.31	23	52	23	52	y	0.35	34	63	34	63	y	0.00479685057457282	4.39400302342094	up	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8298	chr17	35169451	35170861	-	35169451;35169823	35169674;35170861	ES	ENSMUST00000173811.8	known	0.57	53	40.0	53	57;23	y	0.59	48	33.5	48	42;25	y	0.50	48	48.0	48	63;33	y	0.53	29	26.0	29	33;19	y	0.46	29	33.5	29	45;22	y	0.42	37	50.5	37	61;40	y	0.36	23	41.0	23	52;30	y	0.41	34	48.5	34	63;34	y	0.00337044042893696	4.68827254940319	up	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8324	chr17	35361360;35361581	35361474;35361703	+	35361360	35361703	cassetteExon	ENSMUST00000166426.9	known	0.51	62.0	59	57;67	59	y	0.59	44.0	30	40;48	30	y	0.43	55.0	72	47;63	72	y	0.54	42.5	36	40;45	36	y	0.34	26.5	51	31;22	51	y	0.36	47.0	85	40;54	85	y	0.30	25.0	57	18;32	57	y	0.34	35.0	67	33;37	67	y	0.00784796579217839	5.09854115911792	up	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8330	chr17	3541012	3553156	+	3527553	3553156	A5SS	ENSMUST00000169838.9	known	0.78	7	2	7	2	n	1.00	6	0	6	0	n	0.35	7	13	7	13	y	0.71	5	2	5	2	n	0.00	0	13	0	13	n	0.36	9	16	9	16	y	0.31	5	11	5	11	y	0.12	4	29	4	29	y	0.0232157647114792	3.22697957976598	up	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
known_NIR_8361	chr17	36212946;36213330	36213248;36215182	-	36212946	36215182	cassetteExon	ENSMUST00000077494.13	known	0.43	10.0	13	17;3	13	y	0.43	1.5	2	2;1	2	n	0.41	9.0	13	11;7	13	y	0.47	7.0	8	9;5	8	y	0.33	9.5	19	11;8	19	y	0.32	9.0	19	13;5	19	y	0.37	7.0	12	8;6	12	y	0.27	9.0	24	10;8	24	y	0.0055847341518537	4.66628262628691	up	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8452	chr17	46329805	46334991	-	46329805	46331917	5pMXE	ENSMUST00000143985.2	known	0.11	64	508	64	508	y	0.09	12	128	12	128	y	0.11	40	313	40	313	y	0.14	29	171	29	171	y	0.07	25	344	25	344	y	0.08	38	420	38	420	y	0.08	30	353	30	353	y	0.07	35	469	35	469	y	0.0312781410896991	3.50324524872685	up	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8459	chr17	46472252	46472643	+	46472252	46474409	A3SS	ENSMUST00000024748.14	known	0.27	11	30	11	30	y	0.29	6	15	6	15	y	0.19	7	29	7	29	y	0.21	6	23	6	23	y	0.20	5	20	5	20	y	0.17	5	24	5	24	y	0.09	2	21	2	21	y	0.09	4	40	4	40	y	0.0327696482205815	2.78326135653873	up	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8489	chr17	46981111;46983773	46983451;46985123	-	46981111	46985123	cassetteExon	ENSMUST00000233247.2	known	0.88	30.0	4	1;59	4	n	0.80	24.0	6	2;46	6	y	0.74	32.0	11	2;62	11	y	0.66	13.5	7	0;27	7	n	0.59	8.5	6	0;17	6	n	0.68	29.5	14	0;59	14	n	0.49	15.5	16	0;31	16	n	0.65	16.5	9	1;32	9	n	0.0372065207293225	2.67430089732471	up	ENSMUSG00000023971.10	Rrp36	chr17	protein_coding	ribosomal RNA processing 36
known_NIR_8551	chr17	56403276	56403851	+	56403276	56403848	A3SS	ENSMUST00000226053.2	known	0.27	8	22	8	22	y	0.20	4	16	4	16	y	0.26	9	25	9	25	y	0.23	3	10	3	10	y	0.17	4	19	4	19	y	0.11	3	25	3	25	y	0.14	4	25	4	25	y	0.20	3	12	3	12	y	0.015404094248349	3.4	up	ENSMUSG00000002833.12	Hdgfl2	chr17	protein_coding	HDGF like 2
known_NIR_8586	chr17	57352640	57354186	-	57352663	57354186	A3SS	ENSMUST00000040280.14	known	0.02	14	845	14	845	y	0.04	7	170	7	170	y	0.03	17	641	17	641	y	0.02	5	284	5	284	y	0.01	4	442	4	442	y	0.01	9	759	9	759	y	0.02	8	493	8	493	y	0.01	6	646	6	646	y	0.0435576347221575	2.77746029931765	up	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
known_NIR_8657	chr17	7251590;7252512	7252455;7256121	+	7251590	7256121	cassetteExon	ENSMUST00000231963.2	known	0.86	37.0	6	47;27	6	y	0.86	18.0	3	17;19	3	y	0.85	39.0	7	46;32	7	y	1.00	23.5	0	30;17	0	n	0.67	29.0	14	41;17	14	y	0.64	35.0	20	40;30	20	y	0.77	36.0	11	43;29	11	y	0.80	28.0	7	37;19	7	y	0.0170300353520753	3.27582498025722	up	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8687	chr17	74663164	74674243	+	74663164;74666344	74666249;74674243	ES	ENSMUST00000224711.2	known	0.13	10	66.5	10	75;58	y	0.16	3	16.0	3	16;16	y	0.15	10	55.5	10	47;64	y	0.12	6	43.0	6	40;46	y	0.05	2	40.0	2	40;40	y	0.06	4	61.0	4	66;56	y	0.12	5	35.0	5	35;35	y	0.05	3	62.5	3	64;61	y	0.0168196194762685	3.65563077506965	up	ENSMUSG00000024068.9	Spast	chr17	protein_coding	spastin
known_NIR_8777	chr17	87565517	87571569	-	87565517	87566178	A5SS&ES	ENSMUST00000129616.8	known	0.06	17	260	17	260	y	0.06	15	233	15	233	y	0.08	18	209	18	209	y	0.10	23	207	23	207	y	0.05	7	123	7	123	y	0.03	6	167	6	167	y	0.05	8	145	8	145	y	0.04	7	151	7	151	y	0.0339390678350574	3.03614588222994	up	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8787	chr17	87565517;87571793	87571569;87573263	-	87565517	87573263	cassetteExon	ENSMUST00000024963.11	known	0.04	14.0	372	17;11	372	y	0.05	11.5	219	15;8	219	y	0.04	10.5	276	18;3	276	y	0.06	15.5	223	23;8	223	y	0.03	4.0	140	7;1	140	n	0.03	8.0	248	6;10	248	y	0.02	4.0	180	8;0	180	n	0.03	5.5	195	7;4	195	y	0.0166979601915548	3.70328039909021	up	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8790	chr17	87566309;87571793	87571569;87573263	-	87566309	87573263	cassetteExon	ENSMUST00000151155.8	known	0.08	9.5	108	8;11	108	y	0.07	6.0	79	4;8	79	y	0.07	5.0	68	7;3	68	y	0.07	6.0	77	4;8	77	y	0.06	3.0	44	5;1	44	n	0.06	5.0	85	0;10	85	n	0.05	2.5	51	5;0	51	n	0.07	4.5	64	5;4	64	y	0.0478566196408533	2.61116483933547	up	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8897	chr18	32270663;32271000	32270830;32271182	-	32270663	32271182	cassetteExon	ENSMUST00000234386.2	known	0.28	32.0	84	39;25	84	y	0.27	10.5	28	13;8	28	y	0.22	27.5	98	30;25	98	y	0.27	11.5	31	8;15	31	y	0.09	8.0	78	12;4	78	y	0.14	14.0	89	12;16	89	y	0.11	9.0	70	10;8	70	y	0.16	16.5	84	24;9	84	y	0.000654270267818775	6.54846187598099	up	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8898	chr18	32271000	32271182	-	32269000	32271182	A3SS	ENSMUST00000234651.2	known	0.04	25	578	25	578	y	0.04	8	206	8	206	y	0.04	25	592	25	592	y	0.04	15	326	15	326	y	0.01	4	516	4	516	y	0.02	16	790	16	790	y	0.01	8	585	8	585	y	0.01	9	724	9	724	y	0.00160886712173925	11	up	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8966	chr18	34738741	34739728	-	34738741;34739519	34739473;34739728	ES	ENSMUST00000003876.10	known	0.23	11	37.5	11	32;43	y	0.14	2	12.5	2	12;13	y	0.15	5	27.5	5	31;24	y	0.19	5	21.0	5	19;23	y	0.06	2	29.0	2	27;31	y	0.10	2	18.5	2	17;20	y	0.08	2	22.0	2	18;26	y	0.10	4	36.5	4	34;39	y	0.0134243593859858	4.07768688895708	up	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
known_NIR_9198	chr18	61702633;61705028	61704945;61708481	+	61702633	61708481	cassetteExon	ENSMUST00000165123.8	known	0.12	21.0	147	15;27	147	y	0.19	22.0	95	17;27	95	y	0.14	22.5	133	16;29	133	y	0.16	17.5	93	13;22	93	y	0.11	13.0	102	12;14	102	y	0.08	13.0	153	12;14	153	y	0.07	7.5	98	7;8	98	y	0.12	18.5	141	13;24	141	y	0.0251188787751143	3.01140688525669	up	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9233	chr18	65159155	65207795	+	65130492	65207795	A5SS	ENSMUST00000235343.2	known	0.89	8	1	8	1	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	0.77	17	5	17	5	y	0.56	5	4	5	4	n	0.73	8	3	8	3	y	0.0363238726840791	2.71535846654823	up	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9293	chr18	7870027	7871531	+	7870027	7871549	A3SS	ENSMUST00000171042.8	known	0.08	3	35	3	35	y	0.13	4	26	4	26	y	0.09	4	43	4	43	y	0.07	3	39	3	39	y	0.03	1	34	1	34	n	0.00	0	54	0	54	n	0.07	2	27	2	27	y	0.04	2	47	2	47	y	0.0260475131012122	2.94484823845661	up	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9303	chr18	80250558	80251325	+	80250558	80261919	A3SS	ENSMUST00000145963.9	known	0.10	9	79	9	79	y	0.13	6	41	6	41	y	0.08	7	86	7	86	y	0.05	2	42	2	42	y	0.04	3	66	3	66	y	0.04	3	68	3	68	y	0.02	2	88	2	88	y	0.02	1	65	1	65	n	0.0316048919533067	3.3717089216941	up	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
known_NIR_9372	chr19	10509363;10509698	10509495;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.38	10.0	16	10;10	16	y	0.43	4.5	6	3;6	6	y	0.32	7.0	15	5;9	15	y	0.33	4.0	8	4;4	8	y	0.13	2.0	13	0;4	13	n	0.14	3.5	22	4;3	22	y	0.30	3.5	8	4;3	8	y	0.30	6.0	14	8;4	14	y	0.0453206067575975	2.73214523479052	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9375	chr19	10509363;10509698	10509625;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.30	7.0	16	4;10	16	y	0.33	3.0	6	0;6	6	n	0.25	5.0	15	1;9	15	n	0.20	2.0	8	0;4	8	n	0.16	2.5	13	1;4	13	n	0.12	3.0	22	3;3	22	y	0.24	2.5	8	2;3	8	y	0.18	3.0	14	2;4	14	y	0.0470948857114755	2.50202230344504	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9402	chr19	10585836;10587191	10587156;10588066	+	10585836	10588066	cassetteExon	ENSMUST00000025649.10	known	0.03	4.5	168	5;4	168	y	0.04	4.5	122	5;4	122	y	0.02	4.0	163	4;4	163	y	0.05	5.5	101	7;4	101	y	0.02	2.5	99	3;2	99	y	0.02	3.0	166	4;2	166	y	0.01	1.0	86	2;0	86	n	0.00	0.5	169	1;0	169	n	0.0340084674736242	2.79976957577215	up	ENSMUSG00000024740.11	Ddb1	chr19	protein_coding	damage specific DNA binding protein 1
known_NIR_9477	chr19	29700905;29707359	29707232;29712516	-	29700905	29712516	cassetteExon	ENSMUST00000175726.8	known	0.26	3.5	10	2;5	10	y	0.20	0.5	2	0;1	2	n	0.23	1.5	5	0;3	5	n	0.29	4.0	10	2;6	10	y	0.17	1.0	5	0;2	5	n	0.09	1.0	10	0;2	10	n	0.11	0.5	4	1;0	4	n	0.19	3.0	13	4;2	13	y	0.0150415116516034	3.42169031353948	up	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
known_NIR_9516	chr19	3576934	3625641	-	3576934;3594255	3594108;3625641	ES	ENSMUST00000025846.16	known	0.26	19	54.5	19	65;44	y	0.30	10	23.0	10	28;18	y	0.27	12	33.0	12	48;18	y	0.31	9	20.5	9	17;24	y	0.26	5	14.0	5	15;13	y	0.22	10	35.0	10	32;38	y	0.18	4	18.5	4	20;17	y	0.18	10	46.0	10	51;41	y	0.020752196838713	3.32649571929558	up	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9517	chr19	3576934	3625641	-	3594255	3625641	A3SS&ES	ENSMUST00000225446.2	known	0.30	19	44	19	44	y	0.36	10	18	10	18	y	0.40	12	18	12	18	y	0.27	9	24	9	24	y	0.28	5	13	5	13	y	0.21	10	38	10	38	y	0.19	4	17	4	17	y	0.20	10	41	10	41	y	0.0229887673897566	3.1532073921026	up	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9543	chr19	38113095	38113206	-	38113095	38113403	A5SS	ENSMUST00000025951.14	known	0.97	5431	152	5431	152	y	0.98	1091	20	1091	20	y	0.97	5098	150	5098	150	y	0.98	1692	39	1692	39	y	0.96	4180	157	4180	157	y	0.96	5967	264	5967	264	y	0.96	5255	212	5255	212	y	0.97	4790	163	4790	163	y	0.0174670498044487	3.2732683535399	up	ENSMUSG00000024990.14	Rbp4	chr19	protein_coding	retinol binding protein 4, plasma
known_NIR_9579	chr19	39792303	39795610	-	39792374	39795610	A3SS	ENSMUST00000160476.9	known	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.50	2	2	2	2	n	0.44	4	5	4	5	n	0.20	1	4	1	4	n	0.00544980771948809	7.23316537338124	up	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
known_NIR_9600	chr19	40362061	40370965	-	40362061;40365460	40365428;40370965	ES	ENSMUST00000226047.2	known	0.95	28	1.5	28	0;3	n	0.92	11	1.0	11	0;2	n	0.86	12	2.0	12	0;4	n	0.89	25	3.0	25	1;5	n	0.89	4	0.5	4	0;1	n	0.83	17	3.5	17	4;3	y	0.78	7	2.0	7	0;4	n	0.81	15	3.5	15	3;4	y	0.043989457006181	2.56265451781479	up	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9630	chr19	4147733	4147817	+	4147507	4147817	A5SS	ENSMUST00000025779.11	known	0.22	66	237	66	237	y	0.23	35	114	35	114	y	0.21	35	134	35	134	y	0.29	55	136	55	136	y	0.15	27	152	27	152	y	0.15	27	150	27	150	y	0.16	35	183	35	183	y	0.12	26	188	26	188	y	0.00809327639210596	4.63709152390236	up	ENSMUSG00000024856.11	Cdk2ap2	chr19	protein_coding	CDK2-associated protein 2
known_NIR_9631	chr19	4147907	4148005	+	4147917	4148005	A5SS	ENSMUST00000025779.11	known	0.05	25	459	25	459	y	0.08	24	288	24	288	y	0.06	22	326	22	326	y	0.07	20	250	20	250	y	0.04	9	235	9	235	y	0.04	12	265	12	265	y	0.02	7	318	7	318	y	0.03	9	298	9	298	y	0.00801297051076949	4.04411160944866	up	ENSMUSG00000024856.11	Cdk2ap2	chr19	protein_coding	CDK2-associated protein 2
known_NIR_9695	chr19	43749163	43751312	+	43749163	43751342	A3SS	ENSMUST00000026199.14	known	1.00	33	0	33	0	n	1.00	11	0	11	0	n	0.91	52	5	52	5	y	0.87	20	3	20	3	y	0.73	22	8	22	8	y	0.87	45	7	45	7	y	0.83	34	7	34	7	y	0.84	43	8	43	8	y	0.0292738624851722	2.85247272128091	up	ENSMUSG00000025193.15	Cutc	chr19	protein_coding	cutC copper transporter
known_NIR_9749	chr19	46067697	46068350	+	46067697	46068347	A3SS	ENSMUST00000165017.2	known	0.60	47	31	47	31	y	0.49	21	22	21	22	y	0.45	13	16	13	16	y	0.64	16	9	16	9	y	0.40	8	12	8	12	y	0.49	25	26	25	26	y	0.32	9	19	9	19	y	0.23	9	30	9	30	y	0.0427400265588298	2.59263718906214	up	ENSMUSG00000015176.12	Nolc1	chr19	protein_coding	nucleolar and coiled-body phosphoprotein 1
known_NIR_9777	chr19	46612018	46632792	+	46587732	46632792	A5SS	ENSMUST00000138302.9	known	0.08	10	109	10	109	y	0.09	6	59	6	59	y	0.03	4	123	4	123	y	0.10	8	72	8	72	y	0.00	0	50	0	50	n	0.00	0	85	0	85	n	0.02	1	44	1	44	n	0.00	0	65	0	65	n	0.0158765704701045	4.28660704987056	up	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9778	chr19	46612018	46632792	+	46595198	46632792	A5SS	ENSMUST00000099376.11	known	0.04	10	237	10	237	y	0.06	6	100	6	100	y	0.01	4	267	4	267	y	0.07	8	99	8	99	y	0.00	0	103	0	103	n	0.00	0	180	0	180	n	0.01	1	110	1	110	n	0.00	0	200	0	200	n	0.0463990315271815	3.15682074900988	up	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9957	chr19	5806959;5807203	5807063;5807339	+	5806959	5807339	cassetteExon	ENSMUST00000081496.6	known	0.16	1.5	8	1;2	8	n	0.11	0.5	4	1;0	4	n	0.24	3.5	11	2;5	11	y	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	1	0;0	1	n	0.00	0.0	4	0;0	4	n	0.0461873051416056	4.49029962226068	up	ENSMUSG00000024940.12	Ltbp3	chr19	protein_coding	latent transforming growth factor beta binding protein 3
known_NIR_10086	chr19	8321777	8321872	-	8315343	8321872	A3SS	ENSMUST00000096269.11	known	0.49	85	88	85	88	y	0.37	7	12	7	12	y	0.35	65	120	65	120	y	0.42	14	19	14	19	y	0.30	77	177	77	177	y	0.24	75	233	75	233	y	0.34	99	192	99	192	y	0.33	112	223	112	223	y	0.0376705482276162	2.73011375710987	up	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
known_NIR_10113	chr19	8920083	8920829	+	8919746	8920829	A5SS	ENSMUST00000096240.3	known	0.03	2	74	2	74	y	0.03	1	33	1	33	n	0.05	3	61	3	61	y	0.03	1	37	1	37	n	0.00	0	37	0	37	n	0.00	0	46	0	46	n	0.00	0	49	0	49	n	0.02	1	61	1	61	n	0.00542395034130875	4.24264068711928	up	ENSMUSG00000071646.10	Mta2	chr19	protein_coding	metastasis-associated gene family, member 2
known_NIR_10233	chr2	119858057	119860624	+	119858057	119860539	A3SS	ENSMUST00000044675.5	known	0.38	3	5	3	5	n	0.22	2	7	2	7	n	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00642444244458882	6.82908219575395	up	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
known_NIR_10250	chr2	120369973	120385712	-	120369973;120376385	120376324;120385712	ES	ENSMUST00000055241.13	known	0.11	5	42.0	5	25;59	y	0.03	1	36.0	1	30;42	n	0.05	3	53.5	3	40;67	y	0.08	2	22.5	2	11;34	y	0.00	0	22.5	0	20;25	n	0.00	0	37.5	0	26;49	n	0.05	1	18.0	1	15;21	n	0.00	0	40.5	0	39;42	n	0.0471004031878492	2.55744805236402	up	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10439	chr2	132398896;132400602	132400527;132406547	-	132398896	132406547	cassetteExon	ENSMUST00000148833.8	known	0.85	86.0	15	69;103	15	y	0.90	77.5	9	65;90	9	y	0.90	109.0	12	97;121	12	y	0.93	49.5	4	39;60	4	y	0.81	90.0	21	75;105	21	y	0.82	161.5	35	125;198	35	y	0.85	66.0	12	50;82	12	y	0.79	104.0	27	87;121	27	y	0.0110992928520423	3.73196144565885	up	ENSMUSG00000027346.16	Gpcpd1	chr2	protein_coding	glycerophosphocholine phosphodiesterase 1
known_NIR_10472	chr2	144398333	144401127	+	144398262	144401127	A5SS	ENSMUST00000028916.15	known	0.17	1	5	1	5	n	0.23	3	10	3	10	y	0.25	3	9	3	9	y	0.16	3	16	3	16	y	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00404495963051095	4.58257569495584	up	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
known_NIR_10515	chr2	152542188;152546114	152545915;152546542	+	152542188	152546542	cassetteExon	ENSMUST00000125366.8	known	0.08	85.5	996	84;87	996	y	0.09	83.5	802	94;73	802	y	0.08	85.5	996	93;78	996	y	0.07	55.0	746	65;45	746	y	0.07	50.5	700	54;47	700	y	0.05	53.5	986	59;48	986	y	0.05	56.5	977	55;58	977	y	0.06	53.0	879	49;57	879	y	0.0121941868183737	3.57623736407562	up	ENSMUSG00000019188.17	H13	chr2	protein_coding	histocompatibility 13
known_NIR_10516	chr2	152624202	152670367	-	152624202	152671347	A5SS	ENSMUST00000007803.12	known	0.01	1	105	1	105	n	0.02	1	55	1	55	n	0.02	2	110	2	110	y	0.01	1	67	1	67	n	0.00	0	70	0	70	n	0.00	0	105	0	105	n	0.00	0	75	0	75	n	0.01	1	74	1	74	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10521	chr2	152672040	152673523	-	152672022	152673523	A3SS	ENSMUST00000007803.12	known	0.32	6	13	6	13	y	0.25	3	9	3	9	y	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.20	4	16	4	16	y	0.09	1	10	1	10	n	0.0260880897983365	3.09560819408152	up	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10525	chr2	152856202	152857154	-	152856005	152857154	A3SS	ENSMUST00000028972.9	known	0.01	1	76	1	76	n	0.03	1	32	1	32	n	0.01	1	95	1	95	n	0.02	1	41	1	41	n	0.00	0	63	0	63	n	0.00	0	75	0	75	n	0.00	0	62	0	62	n	0.00	0	75	0	75	n	0.0353528470025174	3.65563077506966	up	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
known_NIR_10610	chr2	156019826;156020872	156020800;156021097	-	156019826	156021097	cassetteExon	ENSMUST00000154677.8	known	0.97	30.0	1	15;45	1	n	1.00	20.0	0	8;32	0	n	1.00	25.0	0	13;37	0	n	0.94	15.0	1	5;25	1	n	0.86	12.5	2	3;22	2	y	0.89	15.5	2	13;18	2	y	0.88	23.0	3	16;30	3	y	0.87	20.0	3	11;29	3	y	0.0024952202870958	6.50985032550704	up	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10678	chr2	163536076	163545406	+	163500412	163545406	A5SS	ENSMUST00000147385.8	known	0.10	5	47	5	47	y	0.08	3	33	3	33	y	0.11	5	40	5	40	y	0.10	2	18	2	18	y	0.06	1	16	1	16	n	0.05	2	38	2	38	y	0.04	1	23	1	23	n	0.03	1	32	1	32	n	0.00112921907451139	5.82435206036491	up	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10680	chr2	163536076	163545406	+	163501155	163545406	A5SS	ENSMUST00000099105.9	known	0.31	5	11	5	11	y	0.33	3	6	3	6	n	0.28	5	13	5	13	y	0.33	2	4	2	4	n	0.08	1	11	1	11	n	0.14	2	12	2	12	y	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.000529680835930809	8.13249067507321	up	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10692	chr2	164404724	164407712	+	164404724	164405228	3pMXE	ENSMUST00000146270.2	known	0.03	4	122	4	122	y	0.02	2	100	2	100	y	0.04	8	175	8	175	y	0.01	1	119	1	119	n	0.00	0	34	0	34	n	0.01	1	110	1	110	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.0327788032416222	3.25041803331577	up	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10694	chr2	164405371	164407712	+	164405371	164405977	3pMXE	ENSMUST00000125051.2	known	0.01	1	124	1	124	n	0.02	2	87	2	87	y	0.02	3	186	3	186	y	0.01	1	98	1	98	n	0.00	0	42	0	42	n	0.01	1	73	1	73	n	0.00	0	56	0	56	n	0.00	0	41	0	41	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10695	chr2	164405371	164407712	+	164405371;164406132	164405977;164407712	ES	ENSMUST00000017867.10	known	0.01	1	114.5	1	124;105	n	0.02	2	91.5	2	87;96	y	0.01	3	204.0	3	186;222	y	0.01	1	113.5	1	98;129	n	0.00	0	39.0	0	42;36	n	0.01	1	91.0	1	73;109	n	0.00	0	52.5	0	56;49	n	0.00	0	42.5	0	41;44	n	0.0300197452875444	2.82842712474619	up	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10707	chr2	164675116;164675770	164675612;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.91	122.5	12	0;245	12	n	1.00	60.0	0	0;120	0	n	0.86	100.5	16	0;201	16	n	0.95	70.0	4	0;140	4	n	0.83	58.0	12	0;116	12	n	0.87	121.5	18	1;242	18	n	0.77	64.0	19	0;128	19	n	0.76	93.5	29	2;185	29	y	0.0214785817799512	3.10524882756994	up	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10708	chr2	164675116;164675770	164675644;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.91	128.5	12	12;245	12	y	1.00	63.0	0	6;120	0	n	0.87	108.0	16	15;201	16	y	0.95	75.5	4	11;140	4	y	0.84	61.0	12	6;116	12	y	0.88	126.5	18	11;242	18	y	0.78	67.5	19	7;128	19	y	0.78	100.5	29	16;185	29	y	0.0233707850075717	3.03620040483674	up	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10709	chr2	164675116;164675770	164675728;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.91	125.5	12	6;245	12	y	1.00	60.0	0	0;120	0	n	0.87	103.5	16	6;201	16	y	0.95	71.0	4	2;140	4	y	0.83	59.5	12	3;116	12	y	0.87	124.5	18	7;242	18	y	0.78	66.0	19	4;128	19	y	0.76	93.0	29	1;185	29	n	0.0170006527682223	3.28619847997273	up	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10745	chr2	167293005	167293127	+	167288456	167293127	A5SS	ENSMUST00000047815.13	known	0.07	3	38	3	38	y	0.12	2	15	2	15	y	0.06	2	31	2	31	y	0.04	1	23	1	23	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.06	2	33	2	33	y	0.00	0	29	0	29	n	0.0450004875799938	2.53477833637873	up	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10753	chr2	167345521	167352796	+	167345521;167349117	167348967;167352796	ES	ENSMUST00000109214.8	known	0.03	6	220.0	6	191;249	y	0.06	6	101.5	6	72;131	y	0.04	8	191.5	8	145;238	y	0.05	6	109.5	6	97;122	y	0.02	2	113.0	2	88;138	y	0.02	4	219.5	4	185;254	y	0.03	4	126.5	4	105;148	y	0.02	5	199.5	5	171;228	y	0.0327788032416222	3.25041803331577	up	ENSMUSG00000006418.18	Rnf114	chr2	protein_coding	ring finger protein 114
known_NIR_10783	chr2	172952798	172955172	+	172952798	172971020	A3SS	ENSMUST00000142207.8	known	0.14	5	32	5	32	y	0.11	8	67	8	67	y	0.14	10	59	10	59	y	0.11	7	56	7	56	y	0.06	2	31	2	31	y	0.04	2	55	2	55	y	0.07	2	26	2	26	y	0.12	3	23	3	23	y	0.0456638318821047	2.7495454169735	up	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
known_NIR_10798	chr2	173458216	173501116	-	173450672	173501116	A3SS	ENSMUST00000148213.2	known	0.20	2	8	2	8	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.0205517742787546	6.86751706933987	up	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_11048	chr2	26277683;26279077	26278598;26279161	-	26277683;26278572	26278504;26279161	MXE	ENSMUST00000028293.12	known	0.08	3.5	39.5	0;7	54;25	n	0.07	1.0	13.0	0;2	18;8	n	0.06	2.5	41.0	2;3	53;29	y	0.12	2.0	15.0	1;3	17;13	n	0.06	1.5	25.0	2;1	29;21	n	0.05	2.0	39.5	1;3	48;31	n	0.04	1.0	27.0	0;2	31;23	n	0.02	0.5	28.0	1;0	39;17	n	0.0498345399976947	2.55117121657312	up	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11102	chr2	27354205	27365058	-	27354205	27365589	A5SS	ENSMUST00000077737.13	known	0.06	1	16	1	16	n	0.10	1	9	1	9	n	0.11	2	16	2	16	y	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00633568476783508	4.13578433212913	up	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
known_NIR_11365	chr2	43494300	43495623	+	43494300	43518965	A3SS	ENSMUST00000028223.9	known	0.01	2	276	2	276	y	0.03	3	117	3	117	y	0.02	5	255	5	255	y	0.02	3	132	3	132	y	0.00	0	281	0	281	n	0.01	2	334	2	334	y	0.00	1	246	1	246	n	0.01	3	384	3	384	y	0.0273393097919095	3	up	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
known_NIR_11377	chr2	48830412	48840130	-	48830412	48839129	5pMXE	ENSMUST00000028098.11	known	0.16	5	27	5	27	y	0.14	2	12	2	12	y	0.24	5	16	5	16	y	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.12	3	22	3	22	y	0.06	1	16	1	16	n	0.0170930961693413	3.27350991424672	up	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11453	chr2	59178385;59180966	59180838;59182606	+	59178385	59182606	cassetteExon	ENSMUST00000168631.8	known	0.29	39.5	98	37;42	98	y	0.33	12.5	25	14;11	25	y	0.21	35.0	135	27;43	135	y	0.26	11.5	32	10;13	32	y	0.25	30.0	92	29;31	92	y	0.15	31.0	171	27;35	171	y	0.19	33.5	144	32;35	144	y	0.16	29.5	154	29;30	154	y	0.0463659927586007	2.51106641597839	up	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11552	chr2	73178103	73178481	-	73174101	73178481	A3SS	ENSMUST00000076463.12	known	0.22	20	69	20	69	y	0.25	36	108	36	108	y	0.32	23	48	23	48	y	0.24	23	74	23	74	y	0.16	11	58	11	58	y	0.13	12	81	12	81	y	0.17	9	45	9	45	y	0.15	15	87	15	87	y	0.0114946026375062	4.49427116254046	up	ENSMUSG00000041762.17	Gpr155	chr2	protein_coding	G protein-coupled receptor 155
known_NIR_11556	chr2	73649492;73653650	73653545;73658816	-	73649492	73658816	cassetteExon	ENSMUST00000124737.8	known	0.93	56.5	4	55;58	4	y	1.00	36.5	0	34;39	0	n	0.90	36.5	4	37;36	4	y	0.95	37.0	2	37;37	2	y	0.84	31.0	6	32;30	6	y	0.87	45.0	7	35;55	7	y	0.89	41.0	5	44;38	5	y	0.85	39.0	7	45;33	7	y	0.0207464759101296	3.47208158796788	up	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11812	chr3	106473500	106478009	+	106473500	106480289	A3SS	ENSMUST00000029507.13	known	0.89	266	33	266	33	y	0.87	80	12	80	12	y	0.88	251	35	251	35	y	0.87	113	17	113	17	y	0.86	134	22	134	22	y	0.81	178	41	178	41	y	0.81	128	30	128	30	y	0.77	140	43	140	43	y	0.0346365154918731	3.41396725435278	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11813	chr3	106479009	106480289	+	106473500	106480289	A5SS	ENSMUST00000029507.13	known	0.90	282	33	282	33	y	0.87	78	12	78	12	y	0.90	315	35	315	35	y	0.86	108	17	108	17	y	0.84	115	22	115	22	y	0.85	226	41	226	41	y	0.84	158	30	158	30	y	0.79	160	43	160	43	y	0.0235197542133014	3.08512327330868	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11868	chr3	115801531	115804271	+	115802186	115804271	5pMXE	ENSMUST00000106502.2	known	0.64	7	4	7	4	y	0.75	9	3	9	3	y	0.85	11	2	11	2	y	0.86	12	2	12	2	y	0.59	10	7	10	7	y	0.36	4	7	4	7	y	0.50	4	4	4	4	n	0.14	1	6	1	6	n	0.0221835330182535	3.41103239957607	up	ENSMUSG00000027963.15	Extl2	chr3	protein_coding	exostosin-like glycosyltransferase 2
known_NIR_11996	chr3	141983762	142009704	-	141988873	142009704	A3SS&ES	ENSMUST00000200650.5	known	1.00	54	0	54	0	n	1.00	13	0	13	0	n	0.97	31	1	31	1	n	1.00	35	0	35	0	n	0.96	26	1	26	1	n	0.98	51	1	51	1	n	0.93	37	3	37	3	y	0.94	29	2	29	2	y	0.0285731188701243	2.98834947055051	up	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12039	chr3	146302988	146318038	+	146302988;146316243	146315734;146318038	ES	ENSMUST00000147409.2	known	0.02	31	1684.0	31	41;3327	y	0.03	14	400.5	14	15;786	y	0.02	39	1676.5	39	30;3323	y	0.02	16	832.0	16	15;1649	y	0.01	22	1713.5	22	44;3383	y	0.01	40	3181.0	40	58;6304	y	0.01	25	1926.0	25	40;3812	y	0.01	53	3898.0	53	87;7709	y	0.0153924380733023	5	up	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12093	chr3	154303164	154310529	+	154302921	154310529	A5SS	ENSMUST00000192462.6	known	0.01	1	119	1	119	n	0.06	3	49	3	49	y	0.06	8	127	8	127	y	0.05	3	56	3	56	y	0.01	1	107	1	107	n	0.02	4	168	4	168	y	0.00	0	119	0	119	n	0.00	0	118	0	118	n	0.0438361699248297	2.92306411107734	up	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12116	chr3	157730398	157732362	-	157728996	157732362	A3SS	ENSMUST00000147304.3	known	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	3	3	3	3	n	0.40	4	6	4	6	y	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00381042421312346	8.18879344153759	up	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12162	chr3	32564881	32567150	+	32564738	32567150	A5SS	ENSMUST00000193287.6	known	0.95	21	1	21	1	n	0.92	12	1	12	1	n	1.00	13	0	13	0	n	1.00	16	0	16	0	n	0.81	13	3	13	3	y	0.65	15	8	15	8	y	0.71	5	2	5	2	n	0.83	24	5	24	5	y	0.00840377045527619	4.64813273948195	up	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
known_NIR_12189	chr3	35975336	35986934	-	35975336	35986342	5pMXE	ENSMUST00000178098.8	known	0.82	70	15	70	15	y	0.93	25	2	25	2	y	0.81	63	15	63	15	y	0.97	37	1	37	1	n	0.71	42	17	42	17	y	0.74	64	23	64	23	y	0.77	46	14	46	14	y	0.70	50	21	50	21	y	0.0244802544026439	3.55557718314801	up	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12347	chr3	87826958	87829124	+	87827135	87829124	A5SS	ENSMUST00000119968.8	known	0.22	45	160	45	160	y	0.19	24	105	24	105	y	0.22	42	149	42	149	y	0.21	22	83	22	83	y	0.12	18	138	18	138	y	0.13	31	211	31	211	y	0.10	20	179	20	179	y	0.16	33	175	33	175	y	0.0026645039313473	5.74456264653803	up	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12352	chr3	87834181	87834870	-	87834181;87834424	87834362;87834870	ES	ENSMUST00000160648.8	known	0.20	5	20.0	5	17;23	y	0.12	1	7.0	1	6;8	n	0.11	2	17.0	2	17;17	y	0.06	1	14.5	1	12;17	n	0.00	0	20.0	0	20;20	n	0.08	2	22.0	2	19;25	y	0.00	0	15.5	0	13;18	n	0.05	1	20.5	1	21;20	n	0.0476429063089565	2.56706651812425	up	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12353	chr3	87834181	87834870	-	87834424	87834870	A3SS	ENSMUST00000168070.2	known	0.18	5	23	5	23	y	0.11	1	8	1	8	n	0.11	2	17	2	17	y	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.07	2	25	2	25	y	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.0347397460284836	2.79478278419107	up	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12478	chr3	89905310	89905632	-	89905310	89905835	A5SS	ENSMUST00000079724.9	known	0.11	36	300	36	300	y	0.09	20	198	20	198	y	0.08	24	292	24	292	y	0.10	18	159	18	159	y	0.06	12	196	12	196	y	0.07	21	280	21	280	y	0.05	14	241	14	241	y	0.05	14	290	14	290	y	0.00424735534597244	4.66628262628691	up	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12536	chr3	90448624	90449301	+	90444724	90449301	A5SS	ENSMUST00000098911.10	known	0.23	19	63	19	63	y	0.31	9	20	9	20	y	0.12	10	76	10	76	y	0.25	7	21	7	21	y	0.00	0	38	0	38	n	0.04	3	64	3	64	y	0.06	4	64	4	64	y	0.15	12	69	12	69	y	0.0187059161856175	3.24895907277128	up	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12541	chr3	90602601	90602975	-	90602604	90602975	A3SS	ENSMUST00000069960.12	known	0.28	27	70	27	70	y	0.25	16	47	16	47	y	0.16	14	73	14	73	y	0.19	7	29	7	29	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.0212529976136694	3.32205298513375	up	ENSMUSG00000056071.13	S100a9	chr3	protein_coding	S100 calcium binding protein A9 (calgranulin B)
known_NIR_12702	chr4	107151145	107163979	-	107151145	107154794	A5SS&ES	ENSMUST00000134366.8	known	0.01	4	368	4	368	y	0.02	5	229	5	229	y	0.02	7	313	7	313	y	0.02	3	188	3	188	y	0.01	4	282	4	282	y	0.01	2	335	2	335	y	0.00	1	245	1	245	n	0.00	0	105	0	105	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12703	chr4	107151145	107163979	-	107151145;107154937	107154794;107163979	ES	ENSMUST00000082426.11	known	0.01	4	408.5	4	368;449	y	0.02	5	262.5	5	229;296	y	0.02	7	348.0	7	313;383	y	0.01	3	216.0	3	188;244	y	0.01	4	316.5	4	282;351	y	0.00	2	438.5	2	335;542	y	0.00	1	316.5	1	245;388	n	0.00	0	114.5	0	105;124	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12746	chr4	108687780;108689648	108689610;108690705	-	108687780	108690705	cassetteExon	ENSMUST00000102742.11	known	0.04	6.0	139	6;6	139	y	0.05	4.5	88	4;5	88	y	0.05	6.5	121	6;7	121	y	0.03	3.0	88	3;3	88	y	0.01	1.0	122	1;1	122	n	0.03	3.5	122	3;4	122	y	0.03	4.0	132	4;4	132	y	0.01	1.5	136	3;0	136	n	0.0250214565852385	3	up	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12753	chr4	108944682	108955700	-	108930346	108955700	A3SS	ENSMUST00000126288.8	known	0.92	48	4	48	4	y	0.96	27	1	27	1	n	0.97	33	1	33	1	n	1.00	36	0	36	0	n	0.91	29	3	29	3	y	0.88	38	5	38	5	y	0.83	19	4	19	4	y	0.85	40	7	40	7	y	0.00760956788858733	3.94749715806733	up	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12755	chr4	108948896	108955700	-	108930346	108955700	A3SS	ENSMUST00000126288.8	known	0.99	359	4	359	4	y	0.99	100	1	100	1	n	1.00	290	1	290	1	n	1.00	131	0	131	0	n	0.99	214	3	214	3	y	0.99	359	5	359	5	y	0.98	195	4	195	4	y	0.98	310	7	310	7	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12837	chr4	117142708	117143048	-	117142708	117143126	A5SS	ENSMUST00000030439.15	known	0.74	39	14	39	14	y	0.69	36	16	36	16	y	0.71	48	20	48	20	y	0.76	32	10	32	10	y	0.54	21	18	21	18	y	0.59	35	24	35	24	y	0.64	37	21	37	21	y	0.66	29	15	29	15	y	0.0138358603906526	3.78327568992854	up	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
known_NIR_12876	chr4	119136408	119138767	-	119136396	119138767	A3SS	ENSMUST00000079644.13	known	0.03	31	870	31	870	y	0.04	21	453	21	453	y	0.04	34	925	34	925	y	0.04	20	435	20	435	y	0.03	21	631	21	631	y	0.02	27	1061	27	1061	y	0.03	28	797	28	797	y	0.02	19	886	19	886	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000028639.15	Ybx1	chr4	protein_coding	Y box protein 1
known_NIR_12978	chr4	128684106	128699805	-	128684106;128688769	128688644;128699805	ES	ENSMUST00000106072.9	known	0.18	1	4.5	1	5;4	n	0.33	2	4.0	2	5;3	y	0.25	2	6.0	2	10;2	y	0.14	1	6.0	1	9;3	n	0.18	1	4.5	1	3;6	n	0.00	0	5.5	0	9;2	n	0.00	0	4.5	0	7;2	n	0.00	0	2.5	0	5;0	n	0.0263623774546811	2.93287741160527	up	ENSMUSG00000028799.16	Zfp362	chr4	protein_coding	zinc finger protein 362
known_NIR_13008	chr4	129494927;129495326	129495200;129495663	+	129494927	129495663	cassetteExon	ENSMUST00000150110.8	known	0.55	18.5	15	17;20	15	y	0.52	6.5	6	4;9	6	y	0.51	19.5	19	17;22	19	y	0.44	8.0	10	5;11	10	y	0.26	8.0	23	3;13	23	y	0.41	15.5	22	12;19	22	y	0.32	9.0	19	10;8	19	y	0.38	13.5	22	7;20	22	y	0.00890277937370349	4.00300140239297	up	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13011	chr4	129494927;129495418	129495200;129495663	+	129494927	129495663	cassetteExon	ENSMUST00000150110.8	known	0.39	9.5	15	17;2	15	y	0.37	3.5	6	4;3	6	y	0.37	11.0	19	17;5	19	y	0.35	5.5	10	5;6	10	y	0.16	4.5	23	3;6	23	y	0.25	7.5	22	12;3	22	y	0.24	6.0	19	10;2	19	y	0.15	4.0	22	7;1	22	n	0.00491010196509272	6.20752231839188	up	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13074	chr4	131691498	131695099	-	131685130	131695099	A3SS	ENSMUST00000135579.8	known	0.09	7	74	7	74	y	0.09	8	80	8	80	y	0.06	3	45	3	45	y	0.10	6	56	6	56	y	0.07	2	28	2	28	y	0.05	3	63	3	63	y	0.06	3	47	3	47	y	0.05	3	54	3	54	y	0.0419030225531745	2.77910133951951	up	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13094	chr4	132065549	132067236	-	132066552	132067236	3pMXE	ENSMUST00000131307.8	known	0.91	10	1	10	1	n	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.67	2	1	2	1	n	0.57	8	6	8	6	y	0.67	4	2	4	2	n	0.58	7	5	7	5	y	0.75	3	1	3	1	n	0.0383364972700005	2.81971804229295	up	ENSMUSG00000028896.14	Rcc1	chr4	protein_coding	regulator of chromosome condensation 1
known_NIR_13170	chr4	134653132;134653461	134653337;134654046	+	134653132	134654046	cassetteExon	ENSMUST00000154837.8	known	0.77	17.0	5	7;27	5	y	1.00	4.0	0	0;8	0	n	0.61	9.5	6	4;15	6	y	0.82	9.0	2	4;14	2	y	0.48	6.5	7	2;11	7	y	0.60	9.0	6	3;15	6	y	0.53	10.0	9	9;11	9	y	0.53	12.5	11	8;17	11	y	0.0403735240726398	3.15424041341116	up	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13279	chr4	140970321	140972129	+	140968055	140972129	A5SS	ENSMUST00000141834.9	known	0.04	3	71	3	71	y	0.05	1	19	1	19	n	0.04	2	46	2	46	y	0.04	1	25	1	25	n	0.04	2	43	2	43	y	0.00	0	63	0	63	n	0.00	0	48	0	48	n	0.00	0	46	0	46	n	0.0435463480809013	3.15296312547233	up	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
known_NIR_13331	chr4	148657486	148657568	+	148657426	148657568	A5SS	ENSMUST00000017408.14	known	0.21	9	33	9	33	y	0.20	3	12	3	12	y	0.15	5	28	5	28	y	0.11	2	16	2	16	y	0.00	0	30	0	30	n	0.09	4	42	4	42	y	0.07	2	28	2	28	y	0.09	3	32	3	32	y	0.0160246800975054	3.32733071802503	up	ENSMUSG00000017264.17	Exosc10	chr4	protein_coding	exosome component 10
known_NIR_13393	chr4	152383230;152383702	152383594;152384128	+	152383230	152384128	cassetteExon	ENSMUST00000048892.14	known	0.24	9.5	30	7;12	30	y	0.27	6.5	18	7;6	18	y	0.22	8.5	31	6;11	31	y	0.17	6.0	29	5;7	29	y	0.09	2.0	20	2;2	20	y	0.06	3.5	51	3;4	51	y	0.10	3.5	32	3;4	32	y	0.07	3.0	43	2;4	43	y	0.00295131559373545	6.32831881684378	up	ENSMUSG00000039662.17	Icmt	chr4	protein_coding	isoprenylcysteine carboxyl methyltransferase
known_NIR_13420	chr4	155167211;155167693	155167566;155170662	-	155167211	155170662	cassetteExon	ENSMUST00000030914.4	known	0.19	82.0	344	136;28	344	y	0.20	44.0	176	66;22	176	y	0.18	62.0	292	115;9	292	y	0.14	30.5	186	56;5	186	y	0.13	30.5	197	51;10	197	y	0.14	53.0	332	87;19	332	y	0.11	32.5	268	57;8	268	y	0.12	33.5	255	58;9	255	y	0.0199063198081445	3.58394478112802	up	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
known_NIR_13531	chr4	3939131	3939424	+	3938962	3939424	A5SS	ENSMUST00000149544.8	known	0.84	27	5	27	5	y	0.79	15	4	15	4	y	0.66	29	15	29	15	y	0.80	12	3	12	3	y	0.45	10	12	10	12	y	0.66	19	10	19	10	y	0.67	18	9	18	9	y	0.60	12	8	12	8	y	0.0345493433369797	2.77278883174319	up	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
known_NIR_13566	chr4	41740976	41745002	-	41740976	41741102	5pMXE	ENSMUST00000059354.15	known	0.04	16	437	16	437	y	0.10	17	151	17	151	y	0.06	20	318	20	318	y	0.05	10	184	10	184	y	0.02	4	237	4	237	y	0.03	11	307	11	307	y	0.01	4	306	4	306	y	0.01	3	265	3	265	y	0.0351199937933983	3.21565320454723	up	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13711	chr4	59775549	59783728	-	59782334	59783728	3pMXE	ENSMUST00000138097.2	known	0.50	8	8	8	8	y	0.50	1	1	1	1	n	0.67	6	3	6	3	n	1.00	3	0	3	0	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.0453641019919868	2.53950165714175	up	ENSMUSG00000038544.15	Inip	chr4	protein_coding	INTS3 and NABP interacting protein
known_NIR_13733	chr4	62618131	62618235	+	62615569	62618235	A5SS	ENSMUST00000084521.11	known	0.88	7	1	7	1	n	1.00	3	0	3	0	n	0.89	16	2	16	2	y	1.00	6	0	6	0	n	0.55	6	5	6	5	y	0.85	17	3	17	3	y	0.58	7	5	7	5	y	0.80	16	4	16	4	y	0.0392411247365891	2.98360643466062	up	ENSMUSG00000059810.19	Rgs3	chr4	protein_coding	regulator of G-protein signaling 3
known_NIR_13862	chr5	100185840	100186433	-	100185840	100186579	A5SS	ENSMUST00000128187.8	known	0.04	5	116	5	116	y	0.04	2	43	2	43	y	0.03	3	103	3	103	y	0.05	3	59	3	59	y	0.00	0	79	0	79	n	0.03	4	111	4	111	y	0.02	2	92	2	92	y	0.00	0	138	0	138	n	0.0261377052147607	3.22047024073016	up	ENSMUSG00000029328.16	Hnrnpdl	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D-like
known_NIR_13892	chr5	104195012	104198444	+	104194704	104198444	A5SS	ENSMUST00000128511.8	known	0.90	72	8	72	8	y	0.86	32	5	32	5	y	0.81	64	15	64	15	y	0.85	28	5	28	5	y	0.66	35	18	35	18	y	0.81	69	16	69	16	y	0.70	51	22	51	22	y	0.73	59	22	59	22	y	0.0176197874256238	3.53815185068681	up	ENSMUSG00000029310.14	Nudt9	chr5	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 9
known_NIR_14038	chr5	115123353	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	known	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	9	0	9	0	n	1.00	3	0	3	0	n	0.86	12	2	12	2	y	0.78	7	2	7	2	n	0.82	9	2	9	2	y	0.60	6	4	6	4	y	0.0263179649931134	4.09599990110759	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
known_NIR_14073	chr5	120667728	120668381	+	120667728	120670925	A3SS	ENSMUST00000076051.12	known	0.77	139	42	139	42	y	0.78	58	16	58	16	y	0.78	119	34	119	34	y	0.75	63	21	63	21	y	0.75	82	27	82	27	y	0.66	73	37	73	37	y	0.70	95	41	95	41	y	0.71	127	51	127	51	y	0.0320185255941388	3.28439249215943	up	ENSMUSG00000032754.15	Slc8b1	chr5	protein_coding	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
known_NIR_14232	chr5	125096054	125097024	-	125096054	125096883	A5SS	ENSMUST00000125053.8	known	0.57	24	18	24	18	y	0.74	17	6	17	6	y	0.44	21	27	21	27	y	0.58	11	8	11	8	y	0.41	17	24	17	24	y	0.32	18	39	18	39	y	0.48	23	25	23	25	y	0.34	15	29	15	29	y	0.0423306823676922	2.73166226697249	up	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14233	chr5	125096054	125099935	-	125096054;125097110	125096883;125099935	ES	ENSMUST00000125053.8	known	0.32	20	42.0	20	18;66	y	0.37	7	12.0	7	6;18	y	0.23	11	37.0	11	27;47	y	0.27	7	18.5	7	8;29	y	0.26	14	40.0	14	24;56	y	0.17	12	57.5	12	39;76	y	0.16	8	42.5	8	25;60	y	0.18	9	41.0	9	29;53	y	0.0354219674519856	2.76140548100918	up	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14261	chr5	129631772;129636685	129636533;129637744	+	129631772	129637744	cassetteExon	ENSMUST00000053737.9	known	0.14	6.5	39	8;5	39	y	0.14	3.5	22	5;2	22	y	0.14	6.0	37	6;6	37	y	0.11	3.5	29	3;4	29	y	0.02	0.5	21	1;0	21	n	0.10	4.5	41	3;6	41	y	0.08	3.5	39	0;7	39	n	0.00	0.0	25	0;0	25	n	0.0349781900828906	3.30551378830618	up	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
known_NIR_14286	chr5	129971206	130010982	+	129971206;130007469	130007360;130010982	ES	ENSMUST00000051758.11	known	0.02	2	86.5	2	81;92	y	0.05	3	54.0	3	53;55	y	0.03	2	63.5	2	57;70	y	0.05	3	55.0	3	60;50	y	0.00	0	34.0	0	34;34	n	0.01	1	70.5	1	63;78	n	0.00	0	38.5	0	33;44	n	0.02	1	54.0	1	50;58	n	0.0192769674941264	3.3717089216941	up	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14287	chr5	129971206	130010982	+	130007469	130010982	A5SS&ES	ENSMUST00000073945.6	known	0.02	2	92	2	92	y	0.05	3	55	3	55	y	0.03	2	70	2	70	y	0.06	3	50	3	50	y	0.00	0	34	0	34	n	0.01	1	78	1	78	n	0.00	0	44	0	44	n	0.02	1	58	1	58	n	0.0289410313896387	3.15296312547233	up	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14474	chr5	139328429;139328987	139328876;139330827	-	139328429	139330827	cassetteExon	ENSMUST00000049630.13	known	0.05	7.5	142	7;8	142	y	0.03	1.5	54	1;2	54	n	0.03	5.5	204	5;6	204	y	0.04	3.5	92	3;4	92	y	0.02	2.5	138	3;2	138	y	0.01	1.0	185	1;1	185	n	0.03	4.0	132	4;4	132	y	0.02	3.0	165	3;3	165	y	0.0327734454476789	2.78151794983659	up	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14592	chr5	147474084	147476053	+	147473350	147476053	A5SS	ENSMUST00000031651.15	known	0.15	4	22	4	22	y	0.16	3	16	3	16	y	0.11	2	17	2	17	y	0.25	2	6	2	6	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.12	2	14	2	14	y	0.04	1	23	1	23	n	0.034367379674192	2.73972431275087	up	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
known_NIR_14698	chr5	29959589	29961232	+	29958650	29961232	A5SS	ENSMUST00000012734.10	known	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.70	7	3	7	3	y	1.00	3	0	3	0	n	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.00363935990086327	4.72936945943864	up	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
known_NIR_14699	chr5	30267037	30268234	-	30267047	30268234	A3SS	ENSMUST00000141630.8	known	0.96	25	1	25	1	n	1.00	13	0	13	0	n	0.94	32	2	32	2	y	1.00	16	0	16	0	n	0.87	26	4	26	4	y	0.87	45	7	45	7	y	0.91	29	3	29	3	y	0.95	37	2	37	2	y	0.0231843673179005	3.08334919422389	up	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
known_NIR_14740	chr5	31211402	31211659	+	31211402	31211607	A3SS	ENSMUST00000201887.4	known	0.04	19	472	19	472	y	0.07	15	190	15	190	y	0.06	34	550	34	550	y	0.06	13	217	13	217	y	0.02	7	338	7	338	y	0.04	24	577	24	577	y	0.03	12	419	12	419	y	0.04	19	442	19	442	y	0.0214170190931161	3.16227766016838	up	ENSMUSG00000013622.16	Atraid	chr5	protein_coding	all-trans retinoic acid induced differentiation factor
known_NIR_14762	chr5	31457989	31459501	+	31457989;31458209	31458156;31459501	ES	ENSMUST00000201166.4	known	0.04	15	379.5	15	364;395	y	0.04	5	136.0	5	127;145	y	0.03	11	381.0	11	351;411	y	0.06	11	170.0	11	156;184	y	0.02	4	262.5	4	247;278	y	0.01	4	359.5	4	305;414	y	0.00	0	270.5	0	225;316	n	0.01	5	394.5	5	383;406	y	0.00700062140238017	4.33333333333333	up	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
known_NIR_14886	chr5	38634836	38640648	-	38634836	38640660	A5SS	ENSMUST00000067872.12	known	0.04	3	74	3	74	y	0.07	2	25	2	25	y	0.08	5	58	5	58	y	0.11	3	25	3	25	y	0.00	0	47	0	47	n	0.04	3	77	3	77	y	0.00	0	57	0	57	n	0.01	1	101	1	101	n	0.0143112697289411	3.62103412188951	up	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14924	chr5	45891827	45893073	-	45859339	45893073	A3SS	ENSMUST00000045586.13	known	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.75	9	3	9	3	y	0.57	4	3	4	3	n	0.71	10	4	10	4	y	0.00655720494239603	4.11970140547724	up	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14952	chr5	64980372	64984453	+	64984225	64984453	5pMXE	ENSMUST00000198946.2	known	0.99	79	1	79	1	n	1.00	35	0	35	0	n	0.99	86	1	86	1	n	1.00	59	0	59	0	n	0.97	66	2	66	2	y	0.97	97	3	97	3	y	0.99	69	1	69	1	n	0.97	70	2	70	2	y	0.019184626915828	3.46410161513775	up	ENSMUSG00000029178.15	Klf3	chr5	protein_coding	Kruppel-like factor 3 (basic)
known_NIR_14976	chr5	66203556	66211825	-	66203556	66238282	A5SS	ENSMUST00000094757.9	known	0.55	16	13	16	13	y	0.71	5	2	5	2	n	0.75	15	5	15	5	y	0.84	16	3	16	3	y	0.36	4	7	4	7	y	0.48	10	11	10	11	y	0.67	4	2	4	2	n	0.35	9	17	9	17	y	0.0434192926258139	2.57832317517782	up	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_15007	chr5	72944121	72946483	-	72944162	72946483	A3SS	ENSMUST00000071944.13	known	0.18	5	23	5	23	y	0.13	2	13	2	13	y	0.05	2	41	2	41	y	0.11	2	17	2	17	y	0.09	2	21	2	21	y	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.0362136703673673	2.70968132468671	up	ENSMUSG00000029217.17	Tec	chr5	protein_coding	tec protein tyrosine kinase
known_NIR_15068	chr5	87682955	87683956	-	87682955	87685964	A5SS	ENSMUST00000031199.11	known	0.29	16	39	16	39	y	0.23	3	10	3	10	y	0.13	8	53	8	53	y	0.20	5	20	5	20	y	0.08	4	44	4	44	y	0.15	11	61	11	61	y	0.02	1	51	1	51	n	0.12	5	38	5	38	y	0.033982908763048	2.75601240846343	up	ENSMUSG00000029269.12	Sult1b1	chr5	protein_coding	sulfotransferase family 1B, member 1
known_NIR_15426	chr6	128413677	128414573	-	128413677	128415369	A5SS	ENSMUST00000139448.7	known	0.06	20	290	20	290	y	0.11	8	64	8	64	y	0.06	17	263	17	263	y	0.08	7	79	7	79	y	0.02	4	235	4	235	y	0.05	17	298	17	298	y	0.03	8	296	8	296	y	0.03	8	304	8	304	y	0.0229974280958304	3.36189315436933	up	ENSMUSG00000030357.11	Fkbp4	chr6	protein_coding	FK506 binding protein 4
known_NIR_15454	chr6	134738397	134768201	-	134738397	134769240	A5SS	ENSMUST00000129433.4	known	0.14	3	19	3	19	y	0.14	2	12	2	12	y	0.09	2	21	2	21	y	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.0155065995142821	3.36189315436933	up	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
known_NIR_15474	chr6	136910771	136918649	-	136910771	136918436	5pMXE	ENSMUST00000111892.8	known	0.92	24	2	24	2	y	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.90	9	1	9	1	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	0.69	11	5	11	5	y	0.90	9	1	9	1	n	0.0261497846804624	3.31383653867266	up	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
known_NIR_15493	chr6	138120030	138124657	+	138118880	138124657	A5SS	ENSMUST00000118091.8	known	0.49	163	172	163	172	y	0.51	80	77	80	77	y	0.38	147	241	147	241	y	0.56	91	72	91	72	y	0.32	99	206	99	206	y	0.40	174	264	174	264	y	0.37	138	240	138	240	y	0.33	118	236	118	236	y	0.0331206537810779	3.07841444805905	up	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15555	chr6	147412400;147434861	147434774;147435527	+	147412400	147435527	cassetteExon	ENSMUST00000032441.14	known	0.07	5.5	76	3;8	76	y	0.06	2.5	39	2;3	39	y	0.04	2.5	65	3;2	65	y	0.05	1.5	30	3;0	30	n	0.04	1.0	27	0;2	27	n	0.02	1.5	65	1;2	65	n	0.02	1.0	41	1;1	41	n	0.04	2.0	55	2;2	55	y	0.028201231297682	2.88675134594813	up	ENSMUSG00000030301.18	Ccdc91	chr6	protein_coding	coiled-coil domain containing 91
known_NIR_15745	chr6	39569737	39573385	+	39569646	39573385	A5SS	ENSMUST00000135671.8	known	0.02	9	478	9	478	y	0.01	3	278	3	278	y	0.02	9	551	9	551	y	0.01	3	255	3	255	y	0.01	3	423	3	423	y	0.00	2	626	2	626	y	0.00	2	525	2	525	y	0.01	4	512	4	512	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
known_NIR_15760	chr6	4081635	4082458	-	4080017	4082458	A3SS	ENSMUST00000049166.5	known	0.02	6	348	6	348	y	0.02	6	239	6	239	y	0.02	6	355	6	355	y	0.04	11	257	11	257	y	0.01	3	243	3	243	y	0.00	0	362	0	362	n	0.00	0	319	0	319	n	0.02	7	299	7	299	y	0.0448673860955737	2.52810291480115	up	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
known_NIR_15837	chr6	48815296;48817387	48817295;48817930	-	48815296	48817930	cassetteExon	ENSMUST00000204073.3	known	0.66	465.5	239	466;465	239	y	0.74	322.5	113	340;305	113	y	0.62	367.5	223	337;398	223	y	0.70	384.5	168	378;391	168	y	0.63	212.5	127	213;212	127	y	0.60	269.0	177	239;299	177	y	0.58	167.5	121	148;187	121	y	0.57	228.0	171	204;252	171	y	0.0373439363797488	2.92987344706927	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15848	chr6	48815299;48817387	48817295;48817930	-	48815299	48817930	cassetteExon	ENSMUST00000166247.8	known	0.57	609.0	465	753;465	465	y	0.65	410.5	222	516;305	222	y	0.51	465.5	441	533;398	441	y	0.61	506.5	329	622;391	329	y	0.47	266.5	296	321;212	296	y	0.51	371.5	352	444;299	352	y	0.47	216.5	248	246;187	248	y	0.49	297.0	314	342;252	314	y	0.03840881982598	3.1889640207164	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15867	chr6	51438413	51440391	-	51438413	51438900	5pMXE	ENSMUST00000204885.2	known	0.78	403	111	403	111	y	0.90	418	45	418	45	y	0.70	372	162	372	162	y	0.84	327	61	327	61	y	0.64	198	113	198	113	y	0.66	357	181	357	181	y	0.69	255	112	255	112	y	0.68	315	149	315	149	y	0.0444434790857176	3.11542651220361	up	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15968	chr6	71840254	71845564	+	71840254;71843724	71843710;71845564	ES	ENSMUST00000064062.13	known	0.13	34	226.5	34	222;231	y	0.10	11	99.0	11	96;102	y	0.09	25	266.5	25	255;278	y	0.11	13	103.5	13	97;110	y	0.09	16	165.5	16	161;170	y	0.05	16	276.0	16	269;283	y	0.05	10	212.0	10	210;214	y	0.05	11	207.5	11	198;217	y	0.011678872204607	3.61222822798952	up	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15978	chr6	72092363	72105248	+	72074766	72105248	A5SS	ENSMUST00000069994.11	known	0.85	407	71	407	71	y	0.93	594	46	594	46	y	0.95	535	31	535	31	y	0.91	399	40	399	40	y	0.73	77	28	77	28	y	0.86	236	39	236	39	y	0.79	150	39	150	39	y	0.71	102	41	102	41	y	0.0180203282625856	3.43080573853493	up	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
known_NIR_16116	chr6	85893089	85898405	+	85892772	85898405	A5SS	ENSMUST00000113751.8	known	0.36	42	75	42	75	y	0.27	7	19	7	19	y	0.30	28	64	28	64	y	0.33	13	26	13	26	y	0.20	24	94	24	94	y	0.20	33	132	33	132	y	0.22	29	100	29	100	y	0.22	30	104	30	104	y	0.00914178290684004	5.19615242270663	up	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16124	chr6	85930476	85930819	-	85930476	85935566	A5SS	ENSMUST00000032071.13	known	0.22	10	36	10	36	y	0.23	7	23	7	23	y	0.15	11	64	11	64	y	0.21	10	38	10	38	y	0.10	5	44	5	44	y	0.06	4	62	4	62	y	0.10	6	52	6	52	y	0.14	11	70	11	70	y	0.00566646390758166	4.22134907178567	up	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16271	chr7	100648307	100660919	-	100648307	100652771	5pMXE	ENSMUST00000208340.2	known	0.07	3	39	3	39	y	0.07	2	26	2	26	y	0.06	2	34	2	34	y	0.07	2	27	2	27	y	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.000111490776210507	27	up	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
known_NIR_16272	chr7	100648307	100660919	-	100648307;100652961	100652771;100660919	ES	ENSMUST00000037540.5	known	0.08	3	35.5	3	39;32	y	0.09	2	20.5	2	26;15	y	0.05	2	34.5	2	34;35	y	0.08	2	24.0	2	27;21	y	0.00	0	18.5	0	28;9	n	0.00	0	28.0	0	31;25	n	0.00	0	19.0	0	23;15	n	0.00	0	24.5	0	28;21	n	0.00323903707654442	8.66025403784439	up	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
known_NIR_16294	chr7	101053632;101054172	101054140;101057254	+	101053632	101057254	cassetteExon	ENSMUST00000107010.9	known	0.06	7.0	120	7;7	120	y	0.06	4.0	66	4;4	66	y	0.06	6.5	95	8;5	95	y	0.08	6.5	77	7;6	77	y	0.01	0.5	86	0;1	86	n	0.01	0.5	98	0;1	98	n	0.00	0.5	136	1;0	136	n	0.00	0.0	108	0;0	108	n	0.000179858239791906	10.3923048454133	up	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16297	chr7	101355793;101360707	101360618;101371912	+	101355793	101371912	cassetteExon	ENSMUST00000001884.14	known	0.04	3.5	90	3;4	90	y	0.03	2.0	68	1;3	68	n	0.02	1.5	98	1;2	98	n	0.02	1.0	60	0;2	60	n	0.02	1.5	59	0;3	59	n	0.01	0.5	99	0;1	99	n	0.01	0.5	78	0;1	78	n	0.01	0.5	68	0;1	68	n	0.0435576347221575	2.77746029931765	up	ENSMUSG00000001829.18	Clpb	chr7	protein_coding	ClpB caseinolytic peptidase B
known_NIR_16339	chr7	101845095	101858946	-	101845095	101859225	A5SS	ENSMUST00000210682.2	known	0.43	3	4	3	4	n	0.35	6	11	6	11	y	0.50	4	4	4	4	n	0.44	4	5	4	5	n	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.031398709184647	3.23831062186602	up	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
known_NIR_16343	chr7	101859798	101872586	+	101872357	101872586	5pMXE	ENSMUST00000156529.8	known	0.44	19	24	19	24	y	0.43	9	12	9	12	y	0.31	13	29	13	29	y	0.56	9	7	9	7	y	0.26	7	20	7	20	y	0.29	11	27	11	27	y	0.19	4	17	4	17	y	0.08	3	35	3	35	y	0.0160887211577966	3.32554257971197	up	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16377	chr7	105268435	105268590	-	105268417	105268590	A3SS	ENSMUST00000106791.8	known	0.13	2	13	2	13	y	0.07	2	28	2	28	y	0.19	3	13	3	13	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.0334123567872662	3.7370465934183	up	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
known_NIR_16432	chr7	110436477	110443006	-	110436477	110443546	A5SS	ENSMUST00000177236.8	known	0.11	8	68	8	68	y	0.06	2	32	2	32	y	0.07	4	53	4	53	y	0.07	2	25	2	25	y	0.02	1	40	1	40	n	0.04	3	72	3	72	y	0.05	2	38	2	38	y	0.00	0	65	0	65	n	0.018860989871517	3.1889640207164	up	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16438	chr7	111677166;111679438	111679379;111681637	+	111677166	111681637	cassetteExon	ENSMUST00000106653.4	known	0.27	41.5	113	44;39	113	y	0.35	27.0	51	32;22	51	y	0.28	44.5	112	38;51	112	y	0.35	34.0	62	34;34	62	y	0.26	25.0	73	27;23	73	y	0.26	39.5	115	37;42	115	y	0.17	15.0	72	16;14	72	y	0.23	39.5	132	36;43	132	y	0.0348653457066321	2.71564317113959	up	ENSMUSG00000059263.10	Usp47	chr7	protein_coding	ubiquitin specific peptidase 47
known_NIR_16454	chr7	114152588;114153870	114153826;114161968	-	114152588	114161968	cassetteExon	ENSMUST00000211506.2	known	0.89	40.0	5	78;2	5	y	0.90	9.0	1	18;0	1	n	0.91	31.0	3	62;0	3	n	0.84	21.0	4	37;5	4	y	0.79	27.0	7	54;0	7	n	0.80	28.5	7	57;0	7	n	0.78	21.5	6	41;2	6	y	0.78	21.5	6	43;0	6	n	0.00559095783037187	5.99409157906914	up	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16455	chr7	114152588;114153967	114153826;114161968	-	114152588	114161968	cassetteExon	ENSMUST00000211506.2	known	0.93	71.0	5	78;64	5	y	0.94	16.0	1	18;14	1	n	0.95	54.0	3	62;46	3	y	0.91	40.0	4	37;43	4	y	0.86	42.0	7	54;30	7	y	0.90	60.0	7	57;63	7	y	0.89	47.0	6	41;53	6	y	0.90	53.0	6	43;63	6	y	0.0125824220761203	3.53009043248732	up	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16592	chr7	126396948;126397298	126397146;126398217	-	126396948	126398217	cassetteExon	ENSMUST00000032934.12	known	0.03	5.0	153	6;4	153	y	0.04	3.0	79	3;3	79	y	0.03	8.5	245	12;5	245	y	0.03	2.0	61	4;0	61	n	0.01	1.0	100	2;0	100	n	0.01	1.0	146	1;1	146	n	0.03	4.5	154	8;1	154	n	0.02	3.5	163	3;4	163	y	0.0435576347221575	2.77746029931765	up	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16624	chr7	126810935	126812033	+	126808123	126812033	A5SS	ENSMUST00000206772.2	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	759	3	759	3	y	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0364401235245654	5.09426708108493	up	ENSMUSG00000030672.13	Mylpf	chr7	protein_coding	myosin light chain, phosphorylatable, fast skeletal muscle
known_NIR_16727	chr7	129798104;129800293	129800149;129802713	-	129798104;129801635	129801488;129802713	MXE	ENSMUST00000120187.9	known	0.13	4.5	30.0	3;6	33;27	y	0.14	3.5	21.5	5;2	29;14	y	0.13	3.0	20.5	5;1	24;17	n	0.17	4.0	20.0	7;1	25;15	n	0.06	1.0	14.5	0;2	17;12	n	0.10	4.0	38.0	4;4	45;31	y	0.10	2.0	18.0	1;3	20;16	n	0.04	1.5	37.0	2;1	45;29	n	0.0122678722760387	3.80571198445301	up	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16744	chr7	130331558;130333296	130333261;130335236	+	130331558	130335236	cassetteExon	ENSMUST00000207789.2	known	0.05	4.5	85	2;7	85	y	0.02	2.0	95	2;2	95	y	0.03	6.5	215	6;7	215	y	0.02	1.5	63	0;3	63	n	0.00	0.0	41	0;0	41	n	0.00	0.0	43	0;0	43	n	0.00	0.0	27	0;0	27	n	0.00	0.0	35	0;0	35	n	0.0239811997906567	4.24264068711928	up	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16758	chr7	130510155;130511388	130511318;130512562	+	130510155	130512562	cassetteExon	ENSMUST00000048180.12	known	0.68	8.5	4	13;4	4	y	0.90	9.5	1	18;1	1	n	0.75	6.0	2	12;0	2	n	0.82	4.5	1	9;0	1	n	0.25	2.0	6	2;2	6	y	0.50	3.0	3	4;2	3	n	0.50	2.0	2	4;0	2	n	0.14	0.5	3	0;1	3	n	0.00975041970899585	4.29822655185295	up	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16796	chr7	133269420	133273098	+	133269420	133273095	A3SS	ENSMUST00000051169.13	known	0.26	13	37	13	37	y	0.21	4	15	4	15	y	0.21	10	37	10	37	y	0.32	10	21	10	21	y	0.14	8	49	8	49	y	0.16	8	43	8	43	y	0.22	10	35	10	35	y	0.09	5	48	5	48	y	0.0406917825235912	2.6	up	ENSMUSG00000039990.17	Edrf1	chr7	protein_coding	erythroid differentiation regulatory factor 1
known_NIR_16820	chr7	138470236	138472119	+	138470236	138471419	3pMXE	ENSMUST00000148453.8	known	0.08	4	45	4	45	y	0.08	3	34	3	34	y	0.06	4	58	4	58	y	0.05	2	37	2	37	y	0.00	0	29	0	29	n	0.02	1	42	1	42	n	0.00	0	30	0	30	n	0.05	2	40	2	40	y	0.0155682956266516	3.57294800505248	up	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16821	chr7	138470236	138472119	+	138470236;138471584	138471419;138472119	ES	ENSMUST00000041097.13	known	0.08	4	45.0	4	45;45	y	0.08	3	36.0	3	34;38	y	0.06	4	64.0	4	58;70	y	0.06	2	33.5	2	37;30	y	0.00	0	24.5	0	29;20	n	0.02	1	57.0	1	42;72	n	0.00	0	33.5	0	30;37	n	0.05	2	38.5	2	40;37	y	0.013716490552344	3.99246277830421	up	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16840	chr7	139705795	139706239	+	139697269	139706239	A5SS	ENSMUST00000210240.2	known	0.37	7	12	7	12	y	0.50	4	4	4	4	n	0.29	9	22	9	22	y	0.50	5	5	5	5	y	0.23	9	31	9	31	y	0.21	7	27	7	27	y	0.27	7	19	7	19	y	0.12	5	37	5	37	y	0.0189752815820049	3.41995542023587	up	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16874	chr7	140487618	140487704	+	140487618	140487753	A3SS	ENSMUST00000210080.2	known	0.36	505	909	505	909	y	0.41	108	157	108	157	y	0.34	442	869	442	869	y	0.39	211	331	211	331	y	0.33	316	636	316	636	y	0.34	473	901	473	901	y	0.31	391	853	391	853	y	0.33	388	798	388	798	y	0.0478268629653196	2.83235277149973	up	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16979	chr7	14161975	14171410	-	14161975	14178795	A5SS	ENSMUST00000209972.2	known	0.91	21	2	21	2	y	1.00	2	0	2	0	n	1.00	20	0	20	0	n	1.00	4	0	4	0	n	0.73	32	12	32	12	y	0.79	53	14	53	14	y	0.79	46	12	46	12	y	0.95	20	1	20	1	n	0.0325700479623911	3.10937167602711	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16988	chr7	14161975	14180521	-	14161975	14180367	5pMXE	ENSMUST00000209425.2	known	0.78	90	26	90	26	y	0.83	5	1	5	1	n	0.79	119	32	119	32	y	0.88	7	1	7	1	n	0.68	645	309	645	309	y	0.70	809	354	809	354	y	0.68	377	181	377	181	y	0.71	315	127	315	127	y	0.0077314648100424	5.32677627224436	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_17051	chr7	144003352;144004825	144004715;144005764	-	144003352	144005764	cassetteExon	ENSMUST00000033407.13	known	0.47	44.0	50	48;40	50	y	0.44	24.0	30	24;24	30	y	0.42	33.0	45	28;38	45	y	0.45	20.5	25	20;21	25	y	0.32	18.0	38	18;18	38	y	0.28	27.0	69	33;21	69	y	0.19	11.0	46	13;9	46	y	0.20	17.0	66	19;15	66	y	0.0052990731612295	5.9604961397101	up	ENSMUSG00000031078.16	Cttn	chr7	protein_coding	cortactin
known_NIR_17077	chr7	16749470	16761618	-	16749470;16756581	16756340;16761618	ES	ENSMUST00000003183.12	known	0.01	1	103.0	1	104;102	n	0.05	2	40.0	2	46;34	y	0.03	4	115.5	4	139;92	y	0.02	1	49.0	1	46;52	n	0.00	0	66.5	0	72;61	n	0.00	0	105.0	0	111;99	n	0.00	0	69.0	0	78;60	n	0.00	0	94.5	0	89;100	n	0.048566856559801	3.22047024073016	up	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17201	chr7	26872466	26873847	-	26872384	26873847	A3SS	ENSMUST00000093040.13	known	0.02	4	190	4	190	y	0.02	1	65	1	65	n	0.01	1	144	1	144	n	0.01	1	79	1	79	n	0.00	0	86	0	86	n	0.01	1	138	1	138	n	0.01	1	98	1	98	n	0.00	0	123	0	123	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
known_NIR_17212	chr7	27151975	27158681	+	27147621	27158681	A5SS	ENSMUST00000037399.16	known	0.27	184	508	184	508	y	0.41	171	245	171	245	y	0.30	226	520	226	520	y	0.41	167	237	167	237	y	0.20	95	384	95	384	y	0.20	156	632	156	632	y	0.16	101	547	101	547	y	0.14	66	408	66	408	y	0.0121856772925593	4.36103678165167	up	ENSMUSG00000040466.17	Blvrb	chr7	protein_coding	biliverdin reductase B (flavin reductase (NADPH))
known_NIR_17230	chr7	27674230	27676165	-	27674230	27676177	A5SS	ENSMUST00000205874.2	known	0.86	6	1	6	1	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	0.25	5	15	5	15	y	0.0375167088048757	2.68161665234253	up	ENSMUSG00000063047.10	Zfp780b	chr7	protein_coding	zinc finger protein 780B
known_NIR_17350	chr7	30654227;30655425	30655225;30655574	-	30654227;30654865	30654531;30655574	MXE	ENSMUST00000167285.8	known	0.30	80.5	186.0	3;158	357;15	y	0.31	32.5	72.0	0;65	136;8	n	0.27	61.0	169.0	0;122	326;12	n	0.34	39.5	77.5	0;79	154;1	n	0.21	29.5	114.0	1;58	223;5	n	0.28	66.0	173.5	0;132	325;22	n	0.24	44.0	136.5	3;85	262;11	y	0.25	50.0	149.0	0;100	287;11	n	0.0259682962965683	2.93938769133981	up	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17381	chr7	30753859	30754190	-	30753859	30754976	A5SS	ENSMUST00000039909.13	known	0.12	8	60	8	60	y	0.10	3	28	3	28	y	0.17	12	59	12	59	y	0.12	4	28	4	28	y	0.03	2	57	2	57	y	0.07	5	62	5	62	y	0.11	8	63	8	63	y	0.06	3	47	3	47	y	0.0361955586979174	2.69453227883443	up	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17410	chr7	34905600	34912565	-	34905600;34910922	34910860;34912565	ES	ENSMUST00000122409.8	known	0.06	2	30.5	2	39;22	y	0.15	2	11.0	2	10;12	y	0.10	2	18.5	2	22;15	y	0.12	2	14.5	2	20;9	y	0.00	0	19.5	0	24;15	n	0.00	0	31.0	0	36;26	n	0.00	0	18.0	0	25;11	n	0.00	0	14.0	0	18;10	n	0.0107315782613911	5.69548913537969	up	ENSMUSG00000001802.17	Lrp3	chr7	protein_coding	low density lipoprotein receptor-related protein 3
known_NIR_17498	chr7	44117583	44117730	+	44117614	44117730	A5SS	ENSMUST00000118493.8	known	0.20	4	16	4	16	y	0.33	2	4	2	4	n	0.38	8	13	8	13	y	0.25	2	6	2	6	n	0.12	3	22	3	22	y	0.09	1	10	1	10	n	0.12	3	22	3	22	y	0.25	6	18	6	18	y	0.0362376150999371	2.69645941407579	up	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17699	chr7	45030242	45033228	-	45030242;45032608	45031249;45033228	ES	ENSMUST00000211290.2	known	0.80	181	44.5	181	7;82	y	0.77	101	30.0	101	3;57	y	0.83	134	27.0	134	5;49	y	0.81	91	22.0	91	2;42	y	0.75	97	33.0	97	4;62	y	0.68	101	48.5	101	8;89	y	0.76	104	32.0	104	6;58	y	0.75	144	49.0	144	8;90	y	0.0273621224812905	3.02500043224175	up	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17700	chr7	45030242	45033228	-	45032608	45033228	A3SS	ENSMUST00000211366.2	known	0.69	181	82	181	82	y	0.64	101	57	101	57	y	0.73	134	49	134	49	y	0.68	91	42	91	42	y	0.61	97	62	97	62	y	0.53	101	89	101	89	y	0.64	104	58	104	58	y	0.62	144	90	144	90	y	0.0336763812793066	2.79478278419108	up	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_18114	chr7	97199948	97214358	-	97199948;97207433	97207338;97214358	ES	ENSMUST00000178078.8	known	0.30	31	71.5	31	65;78	y	0.28	7	18.0	7	13;23	y	0.29	35	85.5	35	83;88	y	0.31	8	17.5	8	20;15	y	0.25	21	63.0	21	62;64	y	0.26	36	100.0	36	98;102	y	0.23	22	73.5	22	76;71	y	0.25	28	83.0	28	83;83	y	0.0018876780862459	5.26965186413968	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18115	chr7	97199948	97224795	-	97199948	97207338	A5SS&ES	ENSMUST00000146605.8	known	0.18	14	65	14	65	y	0.24	4	13	4	13	y	0.13	12	83	12	83	y	0.17	4	20	4	20	y	0.15	11	62	11	62	y	0.08	9	98	9	98	y	0.07	6	76	6	76	y	0.12	11	83	11	83	y	0.0444983045815337	2.55996055794858	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18125	chr7	97199948;97224898	97224795;97228573	-	97199948;97214507	97207338;97228573	MXE	ENSMUST00000136757.8	known	0.52	50.5	47.0	14;87	65;29	y	0.60	18.0	12.0	4;32	13;11	y	0.48	50.5	55.0	12;89	83;27	y	0.60	24.5	16.5	4;45	20;13	y	0.44	36.0	45.5	11;61	62;29	y	0.45	57.5	71.5	9;106	98;45	y	0.48	57.0	61.0	6;108	76;46	y	0.42	42.0	57.0	11;73	83;31	y	0.0342539489960382	3.15384615384616	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18129	chr7	97214507	97218894	-	97214507	97228573	A5SS	ENSMUST00000136757.8	known	0.36	16	29	16	29	y	0.27	4	11	4	11	y	0.29	11	27	11	27	y	0.48	12	13	12	13	y	0.12	4	29	4	29	y	0.31	20	45	20	45	y	0.15	8	46	8	46	y	0.18	7	31	7	31	y	0.04529503852031	2.5298221281347	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18132	chr7	97214507;97224898	97224795;97228573	-	97214507	97228573	cassetteExon	ENSMUST00000136757.8	known	0.71	72.0	29	57;87	29	y	0.67	22.5	11	13;32	11	y	0.74	76.0	27	63;89	27	y	0.73	34.5	13	24;45	13	y	0.65	53.5	29	46;61	29	y	0.67	91.0	45	76;106	45	y	0.64	81.0	46	54;108	46	y	0.68	65.0	31	57;73	31	y	0.0340807541973951	2.92155504328906	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18244	chr8	106427949	106428806	+	106427918	106428806	A5SS	ENSMUST00000212634.2	known	0.43	6	8	6	8	y	0.57	4	3	4	3	n	0.42	8	11	8	11	y	0.44	4	5	4	5	n	0.33	3	6	3	6	n	0.24	4	13	4	13	y	0.33	4	8	4	8	y	0.00	0	11	0	11	n	0.0461882428617394	2.80578640627382	up	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18314	chr8	112264196	112335925	+	112333480	112335925	5pMXE	ENSMUST00000173922.2	known	0.86	183	31	183	31	y	0.89	117	14	117	14	y	0.88	152	21	152	21	y	0.94	144	9	144	9	y	0.86	90	15	90	15	y	0.84	127	24	127	24	y	0.78	90	25	90	25	y	0.77	151	44	151	44	y	0.0307024593540303	2.86599088332735	up	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18431	chr8	123034146	123034231	+	123032219	123034231	A5SS	ENSMUST00000054052.15	known	0.17	21	101	21	101	y	0.24	11	34	11	34	y	0.19	17	72	17	72	y	0.26	19	53	19	53	y	0.08	6	73	6	73	y	0.15	21	117	21	117	y	0.07	4	55	4	55	y	0.09	10	105	10	105	y	0.00568111104907259	4.24937886148633	up	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
known_NIR_18449	chr8	123302274;123302991	123302620;123303254	-	123302274	123303254	cassetteExon	ENSMUST00000006764.9	known	0.01	2.5	204	2;3	204	y	0.02	1.5	85	1;2	85	n	0.02	5.0	231	4;6	231	y	0.01	0.5	95	0;1	95	n	0.00	0.0	112	0;0	112	n	0.01	1.5	231	0;3	231	n	0.00	0.0	150	0;0	150	n	0.00	0.0	200	0;0	200	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18451	chr8	123302991	123303254	-	123302970	123303254	A3SS	ENSMUST00000212093.2	known	0.20	3	12	3	12	y	0.50	2	2	2	2	n	0.55	6	5	6	5	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.0270135865918262	2.91310621936514	up	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18571	chr8	13227142	13229323	-	13228947	13229323	3pMXE	ENSMUST00000211128.2	known	0.96	89	4	89	4	y	1.00	31	0	31	0	n	0.99	68	1	68	1	n	1.00	32	0	32	0	n	0.90	62	7	62	7	y	0.95	116	6	116	6	y	0.94	105	7	105	7	y	0.93	115	9	115	9	y	0.00734125127992568	4.00378608698106	up	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18762	chr8	46228740;46235997	46235839;46243013	+	46228740	46243013	cassetteExon	ENSMUST00000138049.9	known	0.21	14.5	54	27;2	54	y	0.27	11.0	30	22;0	30	n	0.35	16.5	30	30;3	30	y	0.32	17.5	38	31;4	38	y	0.17	5.0	25	10;0	25	n	0.15	7.5	44	14;1	44	n	0.16	4.0	21	8;0	21	n	0.21	9.0	33	17;1	33	n	0.0254145245044023	3.44784576938096	up	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18763	chr8	46228740;46235997	46235839;46243013	+	46228740;46238362	46238306;46243013	MXE	ENSMUST00000171337.10	known	0.36	14.5	25.5	27;2	3;48	y	0.44	11.0	14.0	22;0	0;28	n	0.53	16.5	14.5	30;3	1;28	n	0.56	17.5	14.0	31;4	0;28	n	0.24	5.0	16.0	10;0	4;28	n	0.29	7.5	18.0	14;1	1;35	n	0.20	4.0	16.0	8;0	0;32	n	0.34	9.0	17.5	17;1	0;35	n	0.0121161704583242	3.75583462179762	up	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18829	chr8	61943094;61943727	61943620;61944579	+	61943094	61944579	cassetteExon	ENSMUST00000034058.14	known	0.03	3.0	108	4;2	108	y	0.03	2.5	72	3;2	72	y	0.05	4.5	88	5;4	88	y	0.05	3.0	62	1;5	62	n	0.02	1.0	63	1;1	63	n	0.00	0.5	123	0;1	123	n	0.02	2.5	98	2;3	98	y	0.00	0.0	80	0;0	80	n	0.010401720935464	3.67423461417477	up	ENSMUSG00000031641.15	Cbr4	chr8	protein_coding	carbonyl reductase 4
known_NIR_18909	chr8	70962284	70962988	-	70962284	70962768	A5SS	ENSMUST00000129909.8	known	0.90	2115	241	2115	241	y	0.91	1185	111	1185	111	y	0.90	2097	222	2097	222	y	0.91	1058	104	1058	104	y	0.89	1374	167	1374	167	y	0.89	2106	267	2106	267	y	0.89	1867	242	1867	242	y	0.88	1852	243	1852	243	y	0.00395758466635646	4.58257569495585	up	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18923	chr8	70972711	70980295	-	70972711	70975713	5pMXE	ENSMUST00000121623.8	known	0.14	11	69	11	69	y	0.18	6	27	6	27	y	0.15	12	68	12	68	y	0.19	8	35	8	35	y	0.14	8	51	8	51	y	0.13	10	67	10	67	y	0.08	6	66	6	66	y	0.07	6	80	6	80	y	0.0345917700571266	2.82842712474619	up	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18954	chr8	71241928;71242347	71242327;71242492	-	71241928	71242492	cassetteExon	ENSMUST00000166004.3	known	0.11	2.5	21	2;3	21	y	0.24	3.5	11	4;3	11	y	0.17	2.5	12	3;2	12	y	0.19	2.5	11	3;2	11	y	0.00	0.0	11	0;0	11	n	0.09	3.0	32	3;3	32	y	0.15	3.0	17	4;2	17	y	0.00	0.0	17	0;0	17	n	0.0451998127057428	2.58075599535053	up	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_19065	chr8	84662457	84681732	-	84662457;84662804	84662697;84681732	ES	ENSMUST00000098595.3	known	0.72	9	3.5	9	5;2	y	-	-	-	-	-	-	1.00	4	0.0	4	0;0	n	1.00	2	0.0	2	0;0	n	0.50	4	4.0	4	5;3	y	0.38	3	5.0	3	5;5	y	0.71	5	2.0	5	4;0	n	0.67	5	2.5	5	2;3	y	0.0435688935001445	2.82899937762021	up	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
known_NIR_19099	chr8	85684482	85684595	-	85684493	85684595	A3SS	ENSMUST00000109738.10	known	0.04	4	86	4	86	y	0.03	1	38	1	38	n	0.04	4	95	4	95	y	0.05	2	35	2	35	y	0.00	0	72	0	72	n	0.02	2	104	2	104	y	0.00	0	98	0	98	n	0.02	2	99	2	99	y	0.00686878756026517	4.24264068711928	up	ENSMUSG00000052926.17	Rnaseh2a	chr8	protein_coding	ribonuclease H2, large subunit
known_NIR_19259	chr9	103233225	103233479	-	103232512	103233479	A3SS	ENSMUST00000035484.11	known	0.68	27	13	27	13	y	0.72	13	5	13	5	y	0.80	36	9	36	9	y	0.62	10	6	10	6	y	0.62	13	8	13	8	y	0.61	31	20	31	20	y	0.57	8	6	8	6	y	0.54	15	13	15	13	y	0.0417269923073559	2.85498570858532	up	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19282	chr9	106035103	106035199	-	106035103	106035240	A5SS	ENSMUST00000112543.9	known	0.57	141	107	141	107	y	0.54	99	86	99	86	y	0.50	101	103	101	103	y	0.53	94	82	94	82	y	0.51	50	48	50	48	y	0.45	83	103	83	103	y	0.46	68	80	68	80	y	0.47	71	80	71	80	y	0.018800778716675	3.2009219983224	up	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
known_NIR_19364	chr9	107456169	107460016	+	107456169	107456299	3pMXE	ENSMUST00000123005.8	known	0.04	7	159	7	159	y	0.03	2	67	2	67	y	0.05	7	136	7	136	y	0.02	2	97	2	97	y	0.00	0	105	0	105	n	0.00	0	162	0	162	n	0.00	0	74	0	74	n	0.00	0	125	0	125	n	0.0123075518214863	5.42217668469038	up	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
known_NIR_19365	chr9	107456169	107460016	+	107456169;107456584	107456299;107460016	ES	ENSMUST00000130053.8	known	0.08	7	80.0	7	159;1	n	0.06	2	33.5	2	67;0	n	0.09	7	68.0	7	136;0	n	0.04	2	48.5	2	97;0	n	0.00	0	52.5	0	105;0	n	0.00	0	81.0	0	162;0	n	0.00	0	37.0	0	74;0	n	0.00	0	62.5	0	125;0	n	0.00889870539052383	6.08833282682291	up	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19366	chr9	107456169	107460016	+	107456169;107458134	107456299;107460016	ES	ENSMUST00000122985.8	known	0.06	7	110.0	7	159;61	y	0.04	2	48.5	2	67;30	y	0.06	7	103.0	7	136;70	y	0.03	2	68.0	2	97;39	y	0.00	0	79.5	0	105;54	n	0.00	0	116.0	0	162;70	n	0.00	0	61.5	0	74;49	n	0.00	0	91.5	0	125;58	n	0.00795988321642177	6.33333333333333	up	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19638	chr9	119190249	119190403	+	119190249	119193563	A3SS	ENSMUST00000039610.10	known	0.23	41	134	41	134	y	0.27	17	47	17	47	y	0.26	45	131	45	131	y	0.27	24	65	24	65	y	0.24	26	84	26	84	y	0.20	38	152	38	152	y	0.14	17	103	17	103	y	0.20	33	134	33	134	y	0.0482860088503048	2.75519384388992	up	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
known_NIR_19640	chr9	119257142	119257291	+	119257142	119257267	A3SS	ENSMUST00000165044.3	known	0.50	7	7	7	7	y	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.56	5	4	5	4	n	0.00	0	3	0	3	n	0.58	7	5	7	5	y	0.18	2	9	2	9	y	0.22	2	7	2	7	n	0.038147983172419	2.65283499525778	up	ENSMUSG00000061393.15	Acvr2b	chr9	protein_coding	activin receptor IIB
known_NIR_19687	chr9	121812889	121824942	-	121812889;121813222	121813166;121824942	ES	ENSMUST00000217610.2	known	0.50	1	1.0	1	2;0	n	0.67	3	1.5	3	2;1	n	0.67	2	1.0	2	1;1	n	0.75	3	1.0	3	2;0	n	0.40	1	1.5	1	2;1	n	0.35	3	5.5	3	6;5	y	0.53	4	3.5	4	6;1	n	0.29	1	2.5	1	3;2	n	0.0132139027323466	3.47682378624351	up	ENSMUSG00000066235.8	Pomgnt2	chr9	protein_coding	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
known_NIR_19696	chr9	121961816;121963142	121963027;121965972	+	121961816	121965972	cassetteExon	ENSMUST00000119215.9	known	0.28	9.5	25	9;10	25	y	0.33	5.0	10	5;5	10	y	0.30	9.5	22	8;11	22	y	0.46	6.0	7	8;4	7	y	0.16	3.5	18	3;4	18	y	0.26	13.5	39	15;12	39	y	0.00	0.0	30	0;0	30	n	0.14	3.0	19	2;4	19	y	0.0256849181324485	3.01659763703163	up	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19697	chr9	121961816;121963142	121963053;121965972	+	121961816	121965972	cassetteExon	ENSMUST00000119215.9	known	0.18	5.5	25	1;10	25	n	0.23	3.0	10	1;5	10	n	0.20	5.5	22	0;11	22	n	0.22	2.0	7	0;4	7	n	0.10	2.0	18	0;4	18	n	0.15	7.0	39	2;12	39	y	0.00	0.0	30	0;0	30	n	0.12	2.5	19	1;4	19	n	0.0323363904142867	3.3489621830024	up	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19764	chr9	15222991	15224070	+	15222991	15223205	3pMXE	ENSMUST00000034415.6	known	0.96	27	1	27	1	n	1.00	19	0	19	0	n	1.00	31	0	31	0	n	1.00	15	0	15	0	n	0.95	18	1	18	1	n	0.86	18	3	18	3	y	0.74	28	10	28	10	y	0.77	20	6	20	6	y	0.0403766020221689	3.30054798802814	up	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
known_NIR_19791	chr9	20553392	20555491	-	20553392	20553500	5pMXE	ENSMUST00000155301.8	known	0.39	7	11	7	11	y	0.56	5	4	5	4	n	0.77	10	3	10	3	y	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.36	4	7	4	7	y	0.11	2	16	2	16	y	0.14	1	6	1	6	n	0.0469537237490968	2.66443996792083	up	ENSMUSG00000066892.15	Fbxl12	chr9	protein_coding	F-box and leucine-rich repeat protein 12
known_NIR_19872	chr9	22041425;22041904	22041819;22043033	-	22041425	22043033	cassetteExon	ENSMUST00000069330.14	known	0.10	23.0	201	42;4	201	y	0.18	14.0	65	27;1	65	n	0.11	21.5	167	37;6	167	y	0.13	14.0	91	27;1	91	n	0.01	3.0	209	3;3	209	y	0.03	10.0	296	12;8	296	y	0.05	12.5	218	19;6	218	y	0.02	6.0	238	7;5	238	y	0.0053195590550146	5.19306407032521	up	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19905	chr9	32063309;32064005	32063964;32064336	+	32063309	32064336	cassetteExon	ENSMUST00000174641.8	known	0.15	2.0	11	2;2	11	y	-	-	-	-	-	-	0.14	0.5	3	0;1	3	n	0.20	2.0	8	0;4	8	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	5	0;0	5	n	0.012666496970848	8.80065979931197	up	ENSMUSG00000041444.15	Arhgap32	chr9	protein_coding	Rho GTPase activating protein 32
known_NIR_19940	chr9	37401129	37424910	+	37401129;37402865	37402752;37424910	ES	ENSMUST00000209391.2	known	0.78	9	2.5	9	3;2	y	0.80	2	0.5	2	1;0	n	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	n	0.50	2	2.0	2	2;2	n	0.57	4	3.0	4	1;5	n	0.83	5	1.0	5	0;2	n	0.59	8	5.5	8	3;8	y	0.0283044392907975	2.89698332091627	up	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_19958	chr9	4308919	4309288	-	4308919	4309254	A5SS	ENSMUST00000051589.9	known	0.19	16	69	16	69	y	0.21	8	30	8	30	y	0.20	24	98	24	98	y	0.14	7	42	7	42	y	0.12	8	61	8	61	y	0.13	12	80	12	80	y	0.12	8	61	8	61	y	0.09	7	67	7	67	y	0.012466833313243	3.93366040864312	up	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
known_NIR_19967	chr9	44238116	44238443	+	44237492	44238443	A5SS	ENSMUST00000215248.2	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.42	5	7	5	7	y	1.00	2	0	2	0	n	0.38	3	5	3	5	n	0.70	7	3	7	3	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.0435457652136934	2.57925387066786	up	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
known_NIR_20057	chr9	46146024	46146557	-	46146024	46146453	A5SS	ENSMUST00000121916.8	known	0.95	5803	322	5803	322	y	0.94	2427	143	2427	143	y	0.94	5364	332	5364	332	y	0.95	2699	137	2699	137	y	0.93	5960	419	5960	419	y	0.93	7619	532	7619	532	y	0.94	7439	475	7439	475	y	0.94	7591	467	7591	467	y	0.0498252627805777	2.44948974278316	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20094	chr9	50675590	50676065	-	50675590	50675996	A5SS	ENSMUST00000042468.9	known	0.11	19	159	19	159	y	0.15	15	83	15	83	y	0.10	18	165	18	165	y	0.11	12	96	12	96	y	0.05	5	91	5	91	y	0.08	14	155	14	155	y	0.07	10	137	10	137	y	0.07	10	139	10	139	y	0.0123334572019643	3.92232270276368	up	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20319	chr9	69919943;69922297	69922205;69922574	+	69919943	69922574	cassetteExon	ENSMUST00000118198.8	known	0.02	5.5	273	3;8	273	y	0.03	8.0	233	4;12	233	y	0.02	5.0	274	1;9	274	n	0.04	10.5	240	3;18	240	y	0.01	1.5	132	0;3	132	n	0.01	3.0	217	0;6	217	n	0.01	2.0	145	0;4	145	n	0.02	3.5	157	2;5	157	y	0.0435576347221575	2.77746029931765	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20323	chr9	69922692	69924101	+	69923219	69924101	5pMXE	ENSMUST00000148239.8	known	0.93	328	24	328	24	y	0.95	287	14	287	14	y	0.93	336	26	336	26	y	0.94	291	18	291	18	y	0.88	136	18	136	18	y	0.92	216	20	216	20	y	0.92	164	15	164	15	y	0.91	211	22	211	22	y	0.0420458481154015	2.82842712474619	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20397	chr9	77829303	77864423	+	77824808	77864423	A5SS	ENSMUST00000034904.14	known	0.01	2	203	2	203	y	0.03	3	90	3	90	y	0.01	3	219	3	219	y	0.03	3	102	3	102	y	0.01	1	177	1	177	n	0.00	0	312	0	312	n	0.00	0	158	0	158	n	0.00	0	306	0	306	n	0.0485566704091127	2.78151794983659	up	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
known_NIR_20403	chr9	78249220	78254371	-	78249220	78249769	A5SS&ES	ENSMUST00000125479.8	known	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	4	4	4	4	n	-	-	-	-	-	-	0.16	3	16	3	16	y	0.32	11	23	11	23	y	0.36	10	18	10	18	y	0.38	26	43	26	43	y	0.0297913305230857	3.90651629527094	up	ENSMUSG00000057933.11	Gsta2	chr9	protein_coding	glutathione S-transferase, alpha 2 (Yc2)
known_NIR_20418	chr9	79974854;79994805	79994712;79999549	+	79974854	79999549	cassetteExon	ENSMUST00000176640.8	known	0.55	18.5	15	29;8	15	y	0.62	10.0	6	12;8	6	y	0.64	10.5	6	20;1	6	n	0.55	8.5	7	15;2	7	y	0.44	5.5	7	9;2	7	y	0.45	10.5	13	18;3	13	y	0.42	6.5	9	8;5	9	y	0.43	12.0	16	21;3	16	y	0.005059673624989	6.37225500139605	up	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20544	chrX	104087717;104091616	104091515;104110365	-	104087717	104110365	cassetteExon	ENSMUST00000156974.8	known	0.93	14.0	1	14;14	1	n	0.83	5.0	1	4;6	1	n	1.00	13.0	0	14;12	0	n	1.00	3.0	0	4;2	0	n	0.78	3.5	1	4;3	1	n	0.74	14.0	5	14;14	5	y	0.80	12.0	3	13;11	3	y	0.73	8.0	3	6;10	3	y	0.0151735185823975	4.08333802098299	up	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20628	chrX	139442905	139498877	-	139442905	139443595	5pMXE	ENSMUST00000055738.12	known	0.34	83	159	83	159	y	0.33	27	56	27	56	y	0.36	74	131	74	131	y	0.36	31	56	31	56	y	0.21	33	127	33	127	y	0.20	60	243	60	243	y	0.31	38	86	38	86	y	0.25	48	142	48	142	y	0.0200550024129528	4.0290357201638	up	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
known_NIR_20683	chrX	158039184	158068262	+	158062199	158068262	A5SS&ES	ENSMUST00000112493.8	known	0.56	5	4	5	4	n	0.50	2	2	2	2	n	0.56	5	4	5	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	0.0309325460959478	2.80650890416302	up	ENSMUSG00000031309.16	Rps6ka3	chrX	protein_coding	ribosomal protein S6 kinase polypeptide 3
known_NIR_20752	chrX	36360671;36362757	36362719;36363160	-	36360671	36363160	cassetteExon	ENSMUST00000076265.13	known	0.42	11.0	15	11;11	15	y	0.36	4.5	8	4;5	8	y	0.28	9.0	23	10;8	23	y	0.27	1.5	4	0;3	4	n	0.16	3.0	16	2;4	16	y	0.15	6.0	33	8;4	33	y	0.30	6.5	15	4;9	15	y	0.12	2.5	19	3;2	19	y	0.0315125983413612	2.80361588109599	up	ENSMUSG00000036572.17	Upf3b	chrX	protein_coding	UPF3 regulator of nonsense transcripts homolog B (yeast)
known_NIR_20768	chrX	41157359	41183244	+	41157359	41160119	3pMXE	ENSMUST00000141316.8	known	0.79	41	11	41	11	y	0.92	22	2	22	2	y	0.73	30	11	30	11	y	0.80	20	5	20	5	y	0.57	16	12	16	12	y	0.78	31	9	31	9	y	0.48	12	13	12	13	y	0.62	25	15	25	15	y	0.0446123316669208	2.65355778827033	up	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20796	chrX	48100511	48102374	-	48100511;48102057	48102010;48102374	ES	ENSMUST00000167659.8	known	0.51	19	18.0	19	13;23	y	0.61	10	6.5	10	8;5	y	0.55	20	16.5	20	18;15	y	0.55	9	7.5	9	9;6	y	0.43	10	13.0	10	13;13	y	0.46	21	25.0	21	25;25	y	0.50	16	16.0	16	17;15	y	0.52	14	13.0	14	13;13	y	0.036164891485988	2.68804090552477	up	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
known_NIR_20828	chrX	69506627;69508692	69508609;69510760	-	69506627	69510760	cassetteExon	ENSMUST00000101506.10	known	0.96	52.5	2	55;50	2	y	1.00	49.5	0	50;49	0	n	0.94	46.5	3	52;41	3	y	1.00	35.0	0	34;36	0	n	0.90	27.5	3	35;20	3	y	0.91	41.0	4	40;42	4	y	0.74	25.5	9	23;28	9	y	0.86	37.5	6	38;37	6	y	0.0446200831914771	2.93005469242401	up	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20842	chrX	70599843	70601659	+	70599614	70601659	A5SS	ENSMUST00000072699.13	known	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.0221763737348035	3.77389716270345	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20843	chrX	70599843	70601659	+	70599796	70601659	A5SS	ENSMUST00000114582.9	known	0.15	2	11	2	11	y	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.0441593070262951	2.58472820856512	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20844	chrX	70600714	70601659	+	70599614	70601659	A5SS	ENSMUST00000072699.13	known	0.42	5	7	5	7	y	0.40	2	3	2	3	n	0.25	3	9	3	9	y	0.43	3	4	3	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00143824648585412	5.55615470881995	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20845	chrX	70600714	70601659	+	70599796	70601659	A5SS	ENSMUST00000114582.9	known	0.31	5	11	5	11	y	0.18	2	9	2	9	y	0.25	3	9	3	9	y	0.21	3	11	3	11	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00236722617515885	5.04810398903328	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20884	chrX	73065987	73066079	-	73065855	73066079	A3SS	ENSMUST00000114354.10	known	0.04	8	191	8	191	y	0.03	4	122	4	122	y	0.06	9	134	9	134	y	0.06	8	117	8	117	y	0.02	1	63	1	63	n	0.03	6	175	6	175	y	0.03	4	114	4	114	y	0.01	2	152	2	152	y	0.0367698926093315	2.80975743474508	up	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20910	chrX	73332119;73332625	73332268;73332711	+	73332119	73332711	cassetteExon	ENSMUST00000124200.8	known	0.35	24.5	45	35;14	45	y	0.40	9.5	14	14;5	14	y	0.41	35.0	51	47;23	51	y	0.36	14.0	25	22;6	25	y	0.27	14.0	38	13;15	38	y	0.36	20.5	37	27;14	37	y	0.25	17.0	50	16;18	50	y	0.32	22.0	46	25;19	46	y	0.0403888069105624	2.7712812921102	up	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20992	chrX	7766004	7767200	+	7765708	7767200	A5SS	ENSMUST00000033498.10	known	0.01	3	210	3	210	y	0.02	2	120	2	120	y	0.01	1	165	1	165	n	0.02	2	126	2	126	y	0.00	0	105	0	105	n	0.01	1	190	1	190	n	0.01	1	178	1	178	n	0.00	0	169	0	169	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000031158.12	Timm17b	chrX	protein_coding	translocase of inner mitochondrial membrane 17b
known_NIR_21004	chrX	8007447;8009194	8009066;8009490	-	8007447	8009490	cassetteExon	ENSMUST00000040010.10	known	1.00	143.0	0	8;278	0	n	1.00	241.0	0	0;482	0	n	0.97	107.0	3	6;208	3	y	1.00	129.5	0	8;251	0	n	0.95	52.5	3	0;105	3	n	0.96	81.5	3	6;157	3	y	0.97	77.0	2	3;151	2	y	0.94	89.0	6	11;167	6	y	0.00945721941260737	3.78968364479933	up	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21021	chrX	84780955;84782845	84782828;84783901	-	84780955	84783901	cassetteExon	ENSMUST00000142152.2	known	0.12	27.0	200	27;27	200	y	0.11	8.0	64	7;9	64	y	0.13	24.5	169	23;26	169	y	0.08	7.0	84	7;7	84	y	0.05	6.0	111	6;6	111	y	0.04	6.5	156	6;7	156	y	0.10	12.0	104	9;15	104	y	0.03	4.5	152	6;3	152	y	0.0310085582338525	2.90548799087456	up	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
novel_NIR_71	chr1	128187274	128188568	+	128187274	128188571	A3SS	ENSMUST00000027592.6	novel	0.12	44	320	44	320	n	0.11	25	195	25	195	n	0.13	38	248	38	248	n	0.13	31	216	31	216	n	0.08	16	193	16	193	n	0.07	14	201	14	201	n	0.08	19	212	19	212	n	0.11	24	196	24	196	n	0.0144514458951745	3.78968364479933	up	ENSMUSG00000026353.10	Ubxn4	chr1	protein_coding	UBX domain protein 4
novel_NIR_147	chr1	132931628	132931705	-	132931628	132932392	A5SS	ENSMUST00000186617.7	novel	0.05	1	18	1	18	n	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.11	2	17	2	17	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00930868023762772	5.99175257342114	up	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_517	chr1	170708610	170712477	-	170708597	170712477	A3SS	ENSMUST00000172042.2	novel	0.40	4	6	4	6	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	3	6	3	6	y	0.40	2	3	2	3	y	0.0292920780351277	2.93252168755527	up	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_740	chr1	20188171	20202149	-	20188171	20268242	A5SS	ENSMUST00000088448.12	novel	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.67	4	2	4	2	y	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00211337970824095	10.0241975281054	up	ENSMUSG00000043760.17	Pkhd1	chr1	protein_coding	polycystic kidney and hepatic disease 1
novel_NIR_868	chr1	44158685	44159334	+	44158355	44159334	A5SS	ENSMUST00000155917.8	novel	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.0398368672359089	2.92987344706927	up	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_886	chr1	4911355	4918363	+	4911355	4937693	A3SS	ENSMUST00000155020.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.0377495513506237	5	up	ENSMUSG00000104217.2	Gm37988	chr1	protein_coding	predicted gene, 37988
novel_NIR_1353	chr1	93369972	93373283	-	93369972	93389066	A5SS	ENSMUST00000189025.7	novel	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.0184014351611825	4.68292905790847	up	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1512	chr10	127205626	127206008	+	127205583	127206008	A5SS	ENSMUST00000219640.2	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00788678095453256	6.35399419782315	up	ENSMUSG00000112426.2	Gm47200	chr10	lncRNA	predicted gene, 47200
novel_NIR_1762	chr10	43786913	43804319	+	43786913;43797431	43797383;43804319	ES	ENSMUST00000054418.12	novel	0.09	3	30.5	3	29;32	n	0.11	2	15.5	2	12;19	n	0.15	5	28.5	5	30;27	y	0.20	4	16.0	4	12;20	y	0.00	0	20.5	0	23;18	n	0.00	0	35.5	0	31;40	n	0.00	0	14.0	0	16;12	n	0.04	1	23.5	1	20;27	n	0.00836429941614816	4.85530824221163	up	ENSMUSG00000019864.15	Rtn4ip1	chr10	protein_coding	reticulon 4 interacting protein 1
novel_NIR_2064	chr10	80240120	80240346	-	80240120	80242391	A5SS	ENSMUST00000138428.8	novel	0.44	4	5	4	5	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.0470500222325544	3.36851274260999	up	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2527	chr11	113452947	113482608	-	113452950	113482608	A3SS	ENSMUST00000146031.8	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.0454850406344914	2.69562206612287	up	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2606	chr11	115513907	115514698	-	115514418	115514698	A3SS&ES	ENSMUST00000144083.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.0284807033039106	3.62220482447789	up	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2647	chr11	116494876	116495209	-	116494876	116495204	A5SS	ENSMUST00000103029.10	novel	0.17	4	20	4	20	y	0.10	2	18	2	18	n	0.14	4	25	4	25	n	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00301670718746447	8.87451459775657	up	ENSMUSG00000020806.16	Rhbdf2	chr11	protein_coding	rhomboid 5 homolog 2
novel_NIR_3003	chr11	46710871	46730088	+	46710871;46727901	46727855;46730088	ES	ENSMUST00000068877.7	novel	0.09	2	20.0	2	23;17	n	0.17	2	9.5	2	13;6	y	0.22	4	14.5	4	16;13	y	0.26	3	8.5	3	6;11	y	0.00	0	9.5	0	11;8	n	0.12	1	7.5	1	7;8	n	0.00	0	10.5	0	10;11	n	0.00	0	8.0	0	7;9	n	0.0179143718298762	3.27375504871075	up	ENSMUSG00000055546.7	Timd4	chr11	protein_coding	T cell immunoglobulin and mucin domain containing 4
novel_NIR_3014	chr11	48729759	48731065	+	48729759	48736263	A3SS	ENSMUST00000046903.6	novel	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.18	3	14	3	14	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.0375109605683276	2.78637014358118	up	ENSMUSG00000040350.17	Trim7	chr11	protein_coding	tripartite motif-containing 7
novel_NIR_3185	chr11	58872162	58872797	+	58872162	58872819	A3SS	ENSMUST00000108809.8	novel	0.12	7	52	7	52	n	0.04	1	23	1	23	n	0.07	4	51	4	51	n	0.15	5	29	5	29	y	0.00	0	39	0	39	n	0.00	0	40	0	40	n	0.00	0	58	0	58	n	0.00	0	40	0	40	n	0.030904835041313	3.85170305687707	up	ENSMUSG00000020455.17	Trim11	chr11	protein_coding	tripartite motif-containing 11
novel_NIR_3258	chr11	59996220	60084765	+	59996220;60031196	60031067;60084765	ES	ENSMUST00000149770.8	novel	0.18	3	14.0	3	16;12	y	0.22	2	7.0	2	14;0	y	0.12	1	7.0	1	13;1	n	0.25	1	3.0	1	4;2	n	0.00	0	6.5	0	11;2	n	0.00	0	14.0	0	15;13	n	0.12	1	7.5	1	13;2	n	0.00	0	7.5	0	13;2	n	0.00757343661643249	3.95333444924293	up	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3287	chr11	6100627	6109825	-	6100627	6143154	A5SS	ENSMUST00000066496.10	novel	0.21	11	42	11	42	y	0.10	2	19	2	19	n	0.12	4	28	4	28	n	0.21	6	23	6	23	y	0.00	0	25	0	25	n	0.11	4	33	4	33	n	0.00	0	26	0	26	n	0.08	3	36	3	36	n	0.0321128223794582	2.77834245284135	up	ENSMUSG00000053838.15	Nudcd3	chr11	protein_coding	NudC domain containing 3
novel_NIR_3435	chr11	70577267	70578057	-	70577267	70578712	A5SS	ENSMUST00000108545.9	novel	0.23	3	10	3	10	y	0.58	7	5	7	5	y	0.38	3	5	3	5	y	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.0280520935845438	3.9976212943742	up	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
novel_NIR_3457	chr11	70909203	70909883	-	70909203	70910217	A5SS	ENSMUST00000171041.8	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.0387968213685622	4.92800147686227	up	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
novel_NIR_3634	chr11	82671121	82671682	-	82671124	82671682	A3SS	ENSMUST00000152784.8	novel	0.19	4	17	4	17	y	0.23	3	10	3	10	y	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.08	1	11	1	11	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00198247402443928	5.2399563793168	up	ENSMUSG00000085175.8	Gm11423	chr11	lncRNA	predicted gene 11423
novel_NIR_3715	chr11	86578954	86580385	+	86574949	86580385	A5SS	ENSMUST00000108022.8	novel	0.05	3	54	3	54	n	0.06	3	46	3	46	n	0.06	6	87	6	87	n	0.11	5	41	5	41	n	0.03	1	39	1	39	n	0.00	0	48	0	48	n	0.03	1	38	1	38	n	0.00	0	47	0	47	n	0.0182050573650743	3.4219405926104	up	ENSMUSG00000072582.10	Ptrh2	chr11	protein_coding	peptidyl-tRNA hydrolase 2
novel_NIR_4043	chr12	109956012	109958921	-	109958034	109958921	3pMXE	ENSMUST00000222974.2	novel	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.47	7	8	7	8	y	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.33	6	12	6	12	y	0.0491518288458824	2.46852675776862	up	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4225	chr12	25039835	25040672	+	25039835	25040675	A3SS	ENSMUST00000066652.7	novel	0.48	11	12	11	12	y	0.53	8	7	8	7	y	0.42	11	15	11	15	y	0.24	9	28	9	28	y	0.00	0	11	0	11	n	0.22	8	29	8	29	y	0.11	1	8	1	8	n	0.26	11	31	11	31	y	0.0204257758282161	3.13251899697431	up	ENSMUSG00000036333.12	Kidins220	chr12	protein_coding	kinase D-interacting substrate 220
novel_NIR_4432	chr12	69397740	69399081	-	69395711	69399081	A3SS	ENSMUST00000021368.10	novel	0.11	4	32	4	32	n	0.09	2	21	2	21	n	0.17	4	20	4	20	y	0.06	1	16	1	16	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.05	1	18	1	18	n	0.0178876118846568	3.60139693455741	up	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
novel_NIR_4519	chr12	73327406	73327730	-	73327406	73329386	A5SS	ENSMUST00000220701.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.0377495513506237	5	up	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
novel_NIR_4666	chr12	84659219	84659554	-	84659224	84659554	A3SS	ENSMUST00000223107.2	novel	0.08	2	22	2	22	n	0.11	1	8	1	8	n	0.17	4	19	4	19	y	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.0113736186816764	3.95985004402111	up	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
novel_NIR_4821	chr13	119541290	119545263	-	119541290	119545439	A5SS	ENSMUST00000069902.13	novel	0.09	5	49	5	49	n	0.13	3	20	3	20	n	0.02	1	55	1	55	n	0.09	3	31	3	31	n	0.00	0	34	0	34	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.00	0	40	0	40	n	0.0365613444107952	3.60776055954107	up	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
novel_NIR_4850	chr13	12619350	12624127	+	12619350	12624457	A3SS	ENSMUST00000220811.2	novel	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	0.22	2	7	2	7	y	0.80	8	2	8	2	y	0.25	2	6	2	6	y	0.60	3	2	3	2	y	0.0321857714100689	3.79170064322397	up	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4851	chr13	12619350	12632288	+	12619350	12624457	3pMXE	ENSMUST00000220811.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00127124053151766	11.9155233885965	up	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_5399	chr13	81813388	81816710	+	81813388	81817339	A3SS	ENSMUST00000049055.8	novel	0.50	6	6	6	6	y	0.58	11	8	11	8	y	0.83	5	1	5	1	y	0.58	7	5	7	5	y	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.45	5	6	5	6	y	0.40	2	3	2	3	n	0.0475334684169855	2.55829503810591	up	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
novel_NIR_5412	chr13	9052153	9065513	-	9052153	9055509	A5SS&ES	ENSMUST00000221989.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.0207258833510342	3.90006747579955	up	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5719	chr14	30902906	30904470	-	30902906	30906899	A5SS	ENSMUST00000168206.8	novel	0.32	17	36	17	36	y	0.33	10	20	10	20	y	0.13	5	33	5	33	n	0.29	9	22	9	22	y	0.00	0	31	0	31	n	0.08	4	45	4	45	n	0.11	4	31	4	31	n	0.05	2	38	2	38	n	0.0134707337200394	3.97649944290626	up	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5720	chr14	30902906;30904593	30904470;30906899	-	30902906	30906899	cassetteExon	ENSMUST00000168206.8	novel	0.19	8.5	36	17;0	36	n	0.20	5.0	20	10;0	20	n	0.07	2.5	33	5;0	33	n	0.17	4.5	22	9;0	22	n	0.00	0.0	31	0;0	31	n	0.04	2.0	45	4;0	45	n	0.06	2.0	31	4;0	31	n	0.03	1.0	38	2;0	38	n	0.017878209742926	3.86526054022555	up	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_6285	chr14	70726030	70727460	-	70724370	70727460	A3SS	ENSMUST00000226906.2	novel	0.05	4	69	4	69	n	0.05	2	37	2	37	n	0.09	5	51	5	51	n	0.06	2	29	2	29	n	0.06	2	31	2	31	n	0.00	0	49	0	49	n	0.00	0	40	0	40	n	0.00	0	49	0	49	n	0.0433744212666113	2.67809361868916	up	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
novel_NIR_6538	chr15	12322042	12343123	+	12322042	12349454	A3SS	ENSMUST00000226517.2	novel	0.30	3	7	3	7	y	0.57	4	3	4	3	y	0.80	4	1	4	1	y	0.80	8	2	8	2	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.33	3	6	3	6	y	0.0409611021197426	2.73699429602853	up	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
novel_NIR_6573	chr15	3300538	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	novel	0.33	5	10	5	10	y	0.33	3	6	3	6	y	0.20	4	16	4	16	y	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.0178372523775006	4.73700879632375	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6574	chr15	3300538	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	novel	0.33	5	10	5	10	y	0.60	3	2	3	2	y	0.33	4	8	4	8	y	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.0159720270538735	4.93295497890525	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6575	chr15	3300538	3304143	+	3301649	3304143	5pMXE	ENSMUST00000160930.3	novel	0.12	5	37	5	37	n	0.21	3	11	3	11	y	0.13	4	26	4	26	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.0196237454718348	4.57281860291725	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6576	chr15	3300538	3304143	+	3302287	3304143	A5SS&ES	ENSMUST00000160311.3	novel	0.10	5	43	5	43	n	0.23	3	10	3	10	y	0.14	4	25	4	25	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.0302494236237638	3.88365274203161	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_7073	chr15	82575807	82577014	-	82575795	82577014	A3SS	ENSMUST00000100380.5	novel	0.24	19	59	19	59	y	0.25	3	9	3	9	y	0.26	22	63	22	63	y	0.38	13	21	13	21	y	0.15	19	106	19	106	y	0.19	27	118	27	118	y	0.19	20	85	20	85	y	0.16	14	71	14	71	y	0.0382523052935641	3.20335513156751	up	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7181	chr15	90837021	90838527	-	90837021	90840498	A5SS	ENSMUST00000100304.11	novel	0.33	19	39	19	39	y	0.32	18	39	18	39	y	0.37	17	29	17	29	y	0.29	12	29	12	29	y	0.11	5	42	5	42	n	0.19	8	35	8	35	y	0.30	6	14	6	14	y	0.12	5	38	5	38	n	0.0364768642917252	3.15218197275213	up	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7184	chr15	90839602	90840498	-	90835577	90840498	A3SS	ENSMUST00000067205.16	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.0426670462610967	3.4	up	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7195	chr15	9335874	9351186	+	9335874;9338830	9338732;9351186	ES	ENSMUST00000072403.7	novel	0.15	108	604.0	108	554;654	y	0.20	52	210.0	52	190;230	y	0.15	85	481.5	85	439;524	y	0.19	85	370.0	85	324;416	y	0.08	42	477.5	42	453;502	n	0.11	79	632.5	79	581;684	n	0.13	57	382.0	57	353;411	n	0.09	57	568.0	57	513;623	n	0.00697898663358683	4.06981329813668	up	ENSMUSG00000049152.12	Ugt3a2	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A2
novel_NIR_7759	chr16	45721923	45773739	-	45721923;45727820	45727715;45773739	ES	ENSMUST00000136317.2	novel	0.11	7	55.0	7	47;63	n	0.24	4	12.5	4	9;16	y	0.16	14	74.0	14	73;75	y	0.20	5	20.5	5	17;24	y	0.04	2	54.0	2	42;66	n	0.08	7	84.5	7	60;109	n	0.07	6	75.0	6	70;80	n	0.05	3	63.0	3	52;74	n	0.0191707123849971	4.01548099126878	up	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7842	chr16	59307962	59311568	+	59307962;59309929	59309853;59311568	ES	ENSMUST00000120674.8	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.86	3	0.5	3	0;1	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	1;1	n	0.0478274328945332	13.2857142857143	up	ENSMUSG00000022724.16	Riox2	chr16	protein_coding	ribosomal oxygenase 2
novel_NIR_7875	chr16	84628390	84630708	-	84628395	84630708	A3SS	ENSMUST00000114191.8	novel	0.46	100	116	100	116	y	0.31	22	50	22	50	y	0.12	19	144	19	144	n	0.41	28	41	28	41	y	0.21	31	115	31	115	y	0.00	0	160	0	160	n	0.07	9	125	9	125	n	0.09	14	139	14	139	n	0.0457014382758007	2.67614357064589	up	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_8095	chr17	15651890	15652032	+	15651890	15652029	A3SS	ENSMUST00000055352.8	novel	0.11	6	49	6	49	n	0.19	5	22	5	22	y	0.15	8	47	8	47	y	0.09	3	30	3	30	n	0.06	3	49	3	49	n	0.06	3	45	3	45	n	0.10	6	53	6	53	n	0.03	1	33	1	33	n	0.0394075409754313	2.74432929576283	up	ENSMUSG00000014763.9	Fam120b	chr17	protein_coding	family with sequence similarity 120, member B
novel_NIR_8623	chr17	36220383	36220514	-	36220383	36220526	A5SS	ENSMUST00000140990.8	novel	0.33	4	8	4	8	y	0.33	1	2	1	2	n	0.08	1	11	1	11	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.0288609060384804	2.9769354074503	up	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
novel_NIR_8880	chr17	74334136	74380738	-	74334136;74375499	74375396;74380738	ES	ENSMUST00000232749.2	novel	0.40	6	9.0	6	1;17	y	0.18	1	4.5	1	3;6	n	0.25	1	3.0	1	2;4	n	0.35	3	5.5	3	2;9	y	0.00	0	5.5	0	2;9	n	0.14	2	12.0	2	4;20	n	0.00	0	6.5	0	1;12	n	0.09	1	10.5	1	2;19	n	0.0095459117227798	3.93225034860599	up	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8959	chr17	84139824	84142620	-	84139824	84150625	A5SS	ENSMUST00000234214.2	novel	0.98	155	3	155	3	y	1.00	63	0	63	0	y	0.98	186	4	186	4	y	0.97	69	2	69	2	y	0.95	156	8	156	8	y	0.96	201	8	201	8	y	0.94	165	11	165	11	y	0.97	155	4	155	4	y	0.0225060213245261	3.05085107923875	up	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_9311	chr18	38991801	39014384	-	38991801	39051600	A5SS	ENSMUST00000040647.11	novel	0.57	13	10	13	10	y	0.67	6	3	6	3	y	0.50	7	7	7	7	y	0.81	13	3	13	3	y	0.20	2	8	2	8	y	0.45	5	6	5	6	y	0.30	3	7	3	7	y	0.43	3	4	3	4	y	0.0173270348674108	3.27751237464376	up	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9366	chr18	60345241;60350026	60349926;60378447	+	60345241;60345736	60345628;60378447	MXE	ENSMUST00000031549.6	novel	0.23	8.0	26.5	9;7	18;35	y	0.38	5.0	8.0	6;4	8;8	y	0.32	8.0	17.0	7;9	7;27	y	0.32	4.0	8.5	8;0	7;10	n	0.20	4.5	18.0	9;0	10;26	n	0.28	7.5	19.5	9;6	11;28	y	0.20	4.0	16.0	6;2	10;22	y	0.19	5.5	23.5	9;2	22;25	y	0.049236425487183	2.54276849944918	up	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9373	chr18	60515996	60522864	+	60509202	60522864	A5SS	ENSMUST00000066912.13	novel	0.56	5	4	5	4	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00570082164041663	4.66145405628934	up	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9551	chr18	80253345	80261919	+	80258791	80261919	5pMXE	ENSMUST00000130675.2	novel	0.82	18	4	18	4	y	1.00	3	0	3	0	y	0.86	25	4	25	4	y	1.00	7	0	7	0	y	0.62	10	6	10	6	y	0.60	12	8	12	8	y	0.71	22	9	22	9	y	0.75	12	4	12	4	y	0.00634882509387256	4.23586871043679	up	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
novel_NIR_9696	chr19	24244763	24247398	-	24244763	24249668	A5SS	ENSMUST00000123684.2	novel	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.0304078948315939	4.59436672356726	up	ENSMUSG00000059363.11	Fxn	chr19	protein_coding	frataxin
novel_NIR_9737	chr19	29104212	29105399	+	29099290	29105399	A5SS	ENSMUST00000064393.6	novel	0.59	298	210	298	210	y	0.76	287	89	287	89	y	0.59	265	183	265	183	y	0.62	176	108	176	108	y	0.47	133	150	133	150	y	0.48	175	191	175	191	y	0.48	156	168	156	168	y	0.51	219	214	219	214	y	0.0288720751876434	3.73196144565884	up	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9738	chr19	29104222	29105399	+	29099290	29105399	A5SS	ENSMUST00000064393.6	novel	0.47	185	210	185	210	y	0.56	112	89	112	89	y	0.40	122	183	122	183	y	0.48	98	108	98	108	y	0.28	57	150	57	150	y	0.34	100	191	100	191	y	0.35	89	168	89	168	y	0.36	121	214	121	214	y	0.013344079874721	3.88106770968559	up	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9972	chr19	44513691	44513915	-	44513686	44513915	A3SS	ENSMUST00000063632.14	novel	0.30	3	7	3	7	y	0.20	2	8	2	8	y	0.27	3	8	3	8	y	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.20	3	12	3	12	y	0.07	1	14	1	14	n	0.0170154171936724	3.77908249855603	up	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_10161	chr19	5731620	5733335	-	5731581	5733335	A3SS	ENSMUST00000145270.8	novel	0.57	4	3	4	3	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00811291782502543	4.24775701021377	up	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10163	chr19	5731620	5733335	-	5731620	5733305	A5SS	ENSMUST00000127876.8	novel	0.27	4	11	4	11	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.0136598704293118	3.45825233354277	up	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10266	chr19	6996210	6996646	-	6996207	6996646	A3SS	ENSMUST00000040772.9	novel	0.25	2	6	2	6	y	0.67	6	3	6	3	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.0124918447626443	3.80470739388497	up	ENSMUSG00000024965.10	Fermt3	chr19	protein_coding	fermitin family member 3
novel_NIR_10432	chr2	120234750	120235454	+	120234750	120236747	A3SS	ENSMUST00000154963.8	novel	0.38	3	5	3	5	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.047244489675358	2.63133205164791	up	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
novel_NIR_10556	chr2	130446546;130470555	130470409;130471836	-	130446546	130471836	cassetteExon	ENSMUST00000028761.5	novel	0.57	6.5	5	6;7	5	y	0.50	2.0	2	1;3	2	n	0.67	4.0	2	0;8	2	n	0.53	4.5	4	3;6	4	y	0.33	2.5	5	1;4	5	n	0.43	4.5	6	0;9	6	n	0.50	2.0	2	1;3	2	n	0.41	3.5	5	4;3	5	y	0.0259113913707413	2.94410202907854	up	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10562	chr2	130477384	130477756	-	130477384	130477693	A5SS	ENSMUST00000089561.10	novel	0.14	8	50	8	50	n	0.13	4	26	4	26	n	0.11	8	66	8	66	n	0.20	10	41	10	41	y	0.11	5	40	5	40	n	0.00	0	63	0	63	n	0.03	1	29	1	29	n	0.06	4	66	4	66	n	0.0214683549265232	3.12358075880179	up	ENSMUSG00000037703.15	Lzts3	chr2	protein_coding	leucine zipper, putative tumor suppressor family member 3
novel_NIR_10742	chr2	154924261	154924747	+	154924261	154938138	A3SS	ENSMUST00000209674.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.00433266107747074	15.1428571428571	up	ENSMUSG00000109877.2	Gm45609	chr2	lncRNA	predicted gene 45609
novel_NIR_11106	chr2	181216830	181222859	-	181216830	181223196	A5SS	ENSMUST00000131949.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.013846832988859	5.19615242270663	up	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11226	chr2	25390898	25392006	+	25390898	25392044	A3SS	ENSMUST00000124258.8	novel	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0254743203594085	4.24216820639093	up	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
novel_NIR_11405	chr2	32269545	32273154	-	32269545	32271694	5pMXE	ENSMUST00000146423.2	novel	0.50	4	4	4	4	y	0.75	3	1	3	1	y	0.67	6	3	6	3	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00177393066304628	5.55647116966303	up	ENSMUSG00000039195.5	1110008P14Rik	chr2	protein_coding	RIKEN cDNA 1110008P14 gene
novel_NIR_11482	chr2	34987951	34990577	-	34987951	34990867	A5SS	ENSMUST00000154817.2	novel	0.54	7	6	7	6	y	-	-	-	-	-	-	0.50	9	9	9	9	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.44	7	9	7	9	y	0.0314595368978206	3.66353727650533	up	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11648	chr2	5881812	5884404	-	5881812	5882499	5pMXE	ENSMUST00000132469.8	novel	1.00	1	0	1	0	n	0.67	4	2	4	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.0284807033039106	3.62220482447789	up	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
novel_NIR_11777	chr2	76496151	76502041	-	76497786	76502041	A3SS&ES	ENSMUST00000176815.2	novel	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.0254739283431626	2.95419578350399	up	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
novel_NIR_11889	chr2	91024041	91025484	-	91024041	91033090	A5SS	ENSMUST00000136234.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00506332367381797	14	up	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11892	chr2	91042959	91047398	-	91042959	91047011	A5SS&ES	ENSMUST00000135927.2	novel	0.17	3	15	3	15	n	0.17	1	5	1	5	n	0.24	4	13	4	13	y	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00745697642857627	4.14872755173288	up	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
novel_NIR_11894	chr2	91042959	91047398	-	91042959;91047153	91047011;91047398	ES	ENSMUST00000152277.8	novel	0.19	3	12.5	3	15;10	y	0.20	1	4.0	1	5;3	n	0.26	4	11.5	4	13;10	y	0.31	2	4.5	2	6;3	y	0.00	0	11.0	0	7;15	n	0.08	1	12.0	1	8;16	n	0.10	1	9.5	1	9;10	n	0.00	0	9.0	0	11;7	n	0.00229729107644142	5.07736752825213	up	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
novel_NIR_12006	chr3	106455482	106459472	+	106456301	106459472	A5SS&ES	ENSMUST00000151465.2	novel	0.86	6	1	6	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.0340192109218837	5.28240547622297	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12352	chr3	157740552	157742153	-	157737703	157742153	A3SS	ENSMUST00000137444.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00598625569770709	7	up	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12357	chr3	16002349;16013648	16013582;16017483	-	16002349	16017483	cassetteExon	ENSMUST00000194367.6	novel	0.36	4.5	8	4;5	8	y	0.20	0.5	2	0;1	2	n	0.33	0.5	1	1;0	1	n	0.43	1.5	2	2;1	2	n	0.08	0.5	6	1;0	6	n	0.14	0.5	3	1;0	3	n	0.04	0.5	12	1;0	12	n	0.00	0.0	5	0;0	5	n	0.00540962889467992	4.67849459637517	up	ENSMUSG00000078780.8	Gm5150	chr3	protein_coding	predicted gene 5150
novel_NIR_12369	chr3	20043382	20046675	+	20043382	20059631	A3SS	ENSMUST00000108329.8	novel	0.93	171	12	171	12	y	0.93	167	13	167	13	y	0.86	133	21	133	21	y	0.91	118	11	118	11	y	0.81	50	12	50	12	y	0.80	49	12	49	12	y	0.79	52	14	52	14	y	0.86	65	11	65	11	y	0.0065699651428875	4.07768688895708	up	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12436	chr3	37086675	37087414	+	37086675	37087411	A3SS	ENSMUST00000057272.15	novel	0.13	11	73	11	73	n	0.11	4	31	4	31	n	0.13	7	46	7	46	n	0.15	6	35	6	35	y	0.05	1	20	1	20	n	0.03	1	32	1	32	n	0.03	1	36	1	36	n	0.12	5	37	5	37	n	0.0355894062707195	3.17045624929367	up	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12566	chr3	81903591	81904098	+	81897862	81904098	A5SS	ENSMUST00000142889.2	novel	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.57	4	3	4	3	y	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.0241605890874317	2.99575571586575	up	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12659	chr3	88411550;88413827	88413751;88417188	-	88411550	88417188	cassetteExon	ENSMUST00000149068.2	novel	0.47	4.5	5	8;1	5	n	0.50	1.0	1	2;0	1	n	0.33	0.5	1	1;0	1	n	0.40	2.0	3	2;2	3	y	0.27	1.5	4	3;0	4	n	0.14	0.5	3	1;0	3	n	0.00	0.0	3	0;0	3	n	0.33	1.0	2	2;0	2	n	0.0379989756769452	2.90686734313956	up	ENSMUSG00000028063.16	Lmna	chr3	protein_coding	lamin A
novel_NIR_13028	chr4	108067418	108082441	-	108067418	108075030	5pMXE	ENSMUST00000223127.2	novel	0.15	3	17	3	17	y	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.0181851578299559	4.7034024553687	up	ENSMUSG00000034645.15	Zyg11a	chr4	protein_coding	zyg-11 family member A, cell cycle regulator
novel_NIR_13340	chr4	133393090	133395937	-	133393090	133397049	A5SS	ENSMUST00000062118.11	novel	0.06	1	17	1	17	n	0.25	2	6	2	6	y	0.25	3	9	3	9	y	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.0340211585902917	2.78524249529117	up	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
novel_NIR_13440	chr4	140158942	140159106	+	140158942	140159103	A3SS	ENSMUST00000135716.3	novel	0.35	6	11	6	11	y	-	-	-	-	-	-	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.0109028267016579	4.26401432711221	up	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13531	chr4	149202452	149203536	+	149202380	149203536	A5SS	ENSMUST00000030816.4	novel	0.13	2	13	2	13	n	0.20	1	4	1	4	n	0.04	1	24	1	24	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.0373397541863917	2.87276904615182	up	ENSMUSG00000028974.14	Dffa	chr4	protein_coding	DNA fragmentation factor, alpha subunit
novel_NIR_13717	chr4	33030521	33030914	-	33030521	33030857	A5SS	ENSMUST00000155691.2	novel	0.20	4	16	4	16	y	0.25	2	6	2	6	y	0.35	8	15	8	15	y	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.14	2	12	2	12	n	0.0125008202497517	3.62489095099752	up	ENSMUSG00000085037.2	4933421O10Rik	chr4	lncRNA	RIKEN cDNA 4933421O10 gene
novel_NIR_13823	chr4	44066960	44072437	-	44066960	44072830	A5SS	ENSMUST00000128439.8	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.64	7	4	7	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.43	3	4	3	4	y	0.67	4	2	4	2	y	0.0427083905080287	2.70379436514438	up	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13832	chr4	44908486	44916184	+	44908486	44925975	A3SS	ENSMUST00000107824.9	novel	0.10	2	19	2	19	n	0.15	2	11	2	11	y	0.15	3	17	3	17	n	0.23	3	10	3	10	y	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.04	1	27	1	27	n	0.0140035075018017	3.83327709718061	up	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13894	chr4	49490413	49502655	-	49490413;49499838	49499636;49502655	ES	ENSMUST00000043056.9	novel	0.12	79	588.5	79	658;519	n	0.15	43	247.5	43	262;233	y	0.12	58	439.0	58	474;404	n	0.12	38	271.5	38	306;237	n	0.09	39	403.5	39	441;366	n	0.10	61	548.5	61	599;498	n	0.12	50	384.0	50	436;332	n	0.10	58	507.0	58	572;442	n	0.0444277767619925	2.55376959227625	up	ENSMUSG00000039653.10	Baat	chr4	protein_coding	bile acid-Coenzyme A: amino acid N-acyltransferase
novel_NIR_13938	chr4	60376559	60537520	-	60376559	60377790	5pMXE	ENSMUST00000132829.3	novel	0.75	75	25	75	25	y	1.00	11	0	11	0	y	0.69	45	20	45	20	y	0.93	14	1	14	1	y	0.47	60	69	60	69	y	0.18	20	93	20	93	y	0.14	13	83	13	83	n	0.62	29	18	29	18	y	0.015455397646204	3.58203787305234	up	ENSMUSG00000078686.12	Mup9	chr4	protein_coding	major urinary protein 9
novel_NIR_14074	chr4	95737913	95782661	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.83	5	1	5	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.0352513649727994	2.91278263261288	up	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14342	chr5	114265830	114268517	-	114265830	114266144	5pMXE	ENSMUST00000112279.2	novel	0.53	8	7	8	7	y	0.25	1	3	1	3	n	0.47	7	8	7	8	y	0.33	3	6	3	6	y	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.0142516047402275	3.41881729378914	up	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14359	chr5	115107136;115108096	115108028;115123808	+	115107136	115123808	cassetteExon	ENSMUST00000129609.2	novel	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	1.00	6.5	0	0;13	0	n	-	-	-	-	-	-	0.71	5.0	2	4;6	2	y	0.81	8.5	2	0;17	2	n	0.78	7.0	2	0;14	2	n	0.64	7.0	4	0;14	4	n	0.00603712370765347	6.97932537276774	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14361	chr5	115108096	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	0.75	6	2	6	2	n	0.89	17	2	17	2	y	0.88	14	2	14	2	y	0.78	14	4	14	4	y	0.0156800233433926	4.96632958332422	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14368	chr5	115118358	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00598625569770709	7	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14578	chr5	125465328	125470149	-	125465328	125466974	5pMXE	ENSMUST00000156249.2	novel	0.25	2	6	2	6	y	0.57	4	3	4	3	y	0.40	4	6	4	6	y	0.62	5	3	5	3	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.030430667707041	2.82253212875432	up	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
novel_NIR_14680	chr5	137300196	137300388	-	137299909	137300388	A3SS	ENSMUST00000223263.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.0109003161667721	5.66378372448102	up	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
novel_NIR_14899	chr5	151348046;151349660	151349560;151351553	+	151348046	151351553	cassetteExon	ENSMUST00000201142.4	novel	1.00	1.5	0	1;2	0	n	0.50	1.0	1	1;1	1	n	0.65	5.5	3	6;5	3	y	0.50	1.0	1	1;1	1	n	0.11	0.5	4	1;0	4	n	0.44	8.5	11	6;11	11	y	0.29	2.5	6	3;2	6	y	0.33	3.5	7	4;3	7	y	0.0438002960492126	2.71206047031169	up	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_15350	chr5	9046547	9048402	-	9046547	9047104	5pMXE	ENSMUST00000003720.5	novel	0.18	101	452	101	452	y	0.29	92	229	92	229	y	0.27	152	421	152	421	y	0.28	91	238	91	238	y	0.09	24	238	24	238	n	0.15	77	420	77	420	y	0.11	29	236	29	236	n	0.17	69	334	69	334	y	0.00862085046728123	4.00320384512718	up	ENSMUSG00000003623.5	Crot	chr5	protein_coding	carnitine O-octanoyltransferase
novel_NIR_15766	chr6	129210116	129211647	-	129210116	129210848	5pMXE	ENSMUST00000181517.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	6	2	6	2	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	0.71	5	2	5	2	y	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.0277976306630971	3.07496481732572	up	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15883	chr6	141812736	141813646	+	141812736	141820312	A3SS	ENSMUST00000204491.2	novel	0.67	24	12	24	12	y	0.42	5	7	5	7	y	0.55	11	9	11	9	y	0.60	9	6	9	6	y	0.33	14	29	14	29	y	0.36	14	25	14	25	y	0.31	11	24	11	24	y	0.37	22	38	22	38	y	0.0222093842056612	3.98903542777053	up	ENSMUSG00000107516.2	Gm30784	chr6	lncRNA	predicted gene, 30784
novel_NIR_15948	chr6	149072548	149084964	-	149072548	149090104	A5SS	ENSMUST00000204681.3	novel	0.43	3	4	3	4	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.14	1	6	1	6	n	0.0165168427874785	4.0585022791928	up	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
novel_NIR_16129	chr6	3989299	3994217	+	3994086	3994217	5pMXE	ENSMUST00000031673.7	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.033995244717093	3.71196742483842	up	ENSMUSG00000029663.11	Gngt1	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
novel_NIR_16131	chr6	3992493	3994217	+	3994086	3994217	5pMXE	ENSMUST00000031673.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.0244111623352542	4.2143079912816	up	ENSMUSG00000029663.11	Gngt1	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
novel_NIR_16494	chr6	86502853	86504873	+	86504513	86504873	5pMXE	ENSMUST00000181928.4	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.0444669140940908	4.58257569495584	up	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16542	chr6	88710672	88741578	+	88702827	88741578	A5SS	ENSMUST00000113585.9	novel	0.11	21	175	21	175	n	0.29	22	53	22	53	y	0.16	28	145	28	145	y	0.19	20	83	20	83	y	0.06	6	88	6	88	n	0.06	17	252	17	252	n	0.05	8	152	8	152	n	0.01	1	110	1	110	n	0.0277491868157265	3.58355929673301	up	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
novel_NIR_16874	chr7	120656622	120675356	+	120656622	120675353	A3SS	ENSMUST00000033163.8	novel	0.27	74	197	74	197	y	0.24	46	146	46	146	y	0.25	58	175	58	175	y	0.26	38	111	38	111	y	0.23	34	116	34	116	y	0.24	64	202	64	202	y	0.23	40	135	40	135	y	0.23	43	142	43	142	y	0.0327788032416223	3.25041803331577	up	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_17360	chr7	19299597	19307234	-	19303807	19307234	A3SS&ES	ENSMUST00000119912.2	novel	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	0.75	3	1	3	1	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.0109498190242838	4.14254924964258	up	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17367	chr7	19407538	19409437	-	19407538	19415230	A5SS	ENSMUST00000150569.9	novel	0.76	19	6	19	6	y	0.85	11	2	11	2	y	0.78	18	5	18	5	y	0.91	20	2	20	2	y	0.25	3	9	3	9	y	0.00	0	15	0	15	n	0.44	8	10	8	10	y	0.40	8	12	8	12	y	0.00781641061300344	5.24459012212485	up	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17383	chr7	19412743	19415230	-	19407538	19415230	A3SS	ENSMUST00000150569.9	novel	0.68	13	6	13	6	y	0.80	8	2	8	2	y	0.79	19	5	19	5	y	0.82	9	2	9	2	y	0.53	10	9	10	9	y	0.40	10	15	10	15	y	0.64	18	10	18	10	y	0.56	15	12	15	12	n	0.00941019903063672	4.06886822381292	up	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17384	chr7	19412743	19415230	-	19410809	19415230	A3SS	ENSMUST00000127648.4	novel	0.24	13	41	13	41	y	0.42	8	11	8	11	y	0.31	19	42	19	42	y	0.39	9	14	9	14	y	0.21	10	37	10	37	y	0.14	10	59	10	59	n	0.22	18	65	18	65	y	0.24	15	47	15	47	n	0.0341150927753943	2.98425702481982	up	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17883	chr7	45700120	45701187	+	45700120	45703926	A3SS	ENSMUST00000033121.7	novel	0.08	8	88	8	88	n	0.07	4	54	4	54	n	0.10	7	62	7	62	n	0.07	5	68	5	68	n	0.00	0	41	0	41	n	0.02	1	45	1	45	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.000229068606448108	8.66025403784439	up	ENSMUSG00000030835.7	Nomo1	chr7	protein_coding	nodal modulator 1
novel_NIR_18316	chr7	96996132	96996500	+	96981578	96996500	A5SS	ENSMUST00000054107.6	novel	0.59	10	7	10	7	y	0.73	8	3	8	3	n	0.75	9	3	9	3	n	0.71	5	2	5	2	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.000138994059177574	8.67800845719099	up	ENSMUSG00000044952.6	Kctd21	chr7	protein_coding	potassium channel tetramerisation domain containing 21
novel_NIR_18320	chr7	97207433	97224795	-	97207433	97228573	A5SS	ENSMUST00000124552.3	novel	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	0.75	6	2	6	2	y	0.71	5	2	5	2	y	0.71	5	2	5	2	y	0.0293961688743251	2.95817153258552	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18450	chr8	106001545	106001649	+	106001545	106001675	A3SS	ENSMUST00000173640.8	novel	0.11	3	24	3	24	n	0.10	1	9	1	9	n	0.14	5	30	5	30	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.12	4	30	4	30	n	0.0358600608792476	2.94883912309794	up	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
novel_NIR_18457	chr8	106032639	106033010	+	106032639	106033228	A3SS	ENSMUST00000212046.2	novel	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0103892410940442	9.73427101387576	up	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
novel_NIR_18477	chr8	106427998	106428806	+	106428435	106428806	5pMXE	ENSMUST00000093195.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	5	up	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
novel_NIR_18525	chr8	110304194	110310024	-	110304194	110305089	5pMXE	ENSMUST00000212018.2	novel	0.09	15	158	15	158	n	0.16	49	267	49	267	y	0.14	23	137	23	137	n	0.21	46	170	46	170	y	0.00	0	39	0	39	n	0.07	4	51	4	51	n	0.03	1	34	1	34	n	0.00	0	56	0	56	n	0.00779712575007002	4.18609179139461	up	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18526	chr8	110304194	110310024	-	110304194	110305582	5pMXE	ENSMUST00000212918.2	novel	0.20	15	61	15	61	y	0.40	49	72	49	72	y	0.32	23	48	23	48	y	0.55	46	38	46	38	y	0.00	0	16	0	16	n	0.13	4	26	4	26	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.0156537192333478	4.01703529411547	up	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18544	chr8	111760540	111760839	+	111760540	111763541	A3SS	ENSMUST00000125268.2	novel	0.07	2	28	2	28	n	0.43	3	4	3	4	y	0.24	5	16	5	16	y	0.29	4	10	4	10	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.10	2	18	2	18	n	0.0460459621402145	2.96523399981687	up	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
novel_NIR_18711	chr8	125417098	125419333	-	125417098	125436642	A5SS	ENSMUST00000231984.2	novel	0.27	3	8	3	8	y	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00198907026338084	10.2336343850693	up	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
novel_NIR_18760	chr8	13419580	13420172	+	13419580	13420481	A3SS	ENSMUST00000209885.2	novel	0.13	8	55	8	55	n	0.05	2	35	2	35	n	0.10	4	37	4	37	n	0.06	2	30	2	30	n	0.03	1	36	1	36	n	0.02	1	57	1	57	n	0.03	1	37	1	37	n	0.02	1	43	1	43	n	0.0458990051005518	3.20713490294909	up	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_19457	chr8	94899666	94899755	+	94899580	94899755	A5SS	ENSMUST00000212806.2	novel	0.50	6	6	6	6	y	0.48	10	11	10	11	y	0.11	1	8	1	8	n	0.31	5	11	5	11	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.0431672013815117	2.74397736228014	up	ENSMUSG00000031762.8	Mt2	chr8	protein_coding	metallothionein 2
novel_NIR_19479	chr8	95348653	95349462	+	95328732	95349462	A5SS	ENSMUST00000211983.2	novel	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.0227934027821776	4.32444970669798	up	ENSMUSG00000050079.11	Rspry1	chr8	protein_coding	ring finger and SPRY domain containing 1
novel_NIR_19529	chr9	103105267	103120646	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.10	1	9	1	9	n	0.77	10	3	10	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.0450429070344772	3.32033235866161	up	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19566	chr9	106123478	106123958	-	106120591	106123958	A3SS	ENSMUST00000133617.3	novel	1.00	8	0	8	0	y	1.00	3	0	3	0	y	0.75	6	2	6	2	y	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.45	5	6	5	6	y	0.50	1	1	1	1	n	0.53	8	7	8	7	y	0.00335822525854121	6.30350607341649	up	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19611	chr9	107213862	107214238	-	107213862	107214200	A5SS	ENSMUST00000035196.14	novel	0.08	3	36	3	36	n	0.05	1	20	1	20	n	0.08	3	36	3	36	n	0.09	2	21	2	21	n	0.00	0	31	0	31	n	0.02	1	50	1	50	n	0.04	1	26	1	26	n	0.02	1	42	1	42	n	0.00364400293266409	4.62092427729243	up	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19652	chr9	107536443	107541905	-	107536443	107545914	A5SS	ENSMUST00000192990.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.07	1	14	1	14	n	0.0387038411140691	3.71523936423603	up	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19738	chr9	109662363	109664391	+	109662363	109668676	A3SS	ENSMUST00000200091.5	novel	0.15	2	11	2	11	y	0.41	7	10	7	10	y	0.29	4	10	4	10	y	0.20	3	12	3	12	y	0.00	0	4	0	4	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.0492142276022539	2.46403705866798	up	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19787	chr9	110996312	110999324	+	110996312	111017830	A3SS	ENSMUST00000035078.13	novel	0.44	12	15	12	15	y	0.33	2	4	2	4	y	0.53	21	19	21	19	y	0.50	12	12	12	12	y	0.14	2	12	2	12	n	0.39	9	14	9	14	y	0.03	1	30	1	30	n	0.19	5	22	5	22	y	0.0310895387956446	3.00655201435655	up	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19880	chr9	121289580	121295973	+	121289643	121295973	A5SS	ENSMUST00000211301.2	novel	0.11	2	16	2	16	n	0.20	2	8	2	8	y	0.26	5	14	5	14	y	0.20	3	12	3	12	y	0.00	0	6	0	6	n	0.12	3	23	3	23	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.0162777204019089	3.30747546315826	up	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_20119	chr9	34966945	34967715	-	34966945	35010195	A5SS	ENSMUST00000214526.2	novel	1.00	13	0	13	0	y	1.00	2	0	2	0	y	0.90	9	1	9	1	y	0.75	3	1	3	1	y	0.62	5	3	5	3	y	0.43	3	4	3	4	y	0.57	4	3	4	3	y	0.75	6	2	6	2	y	0.0114917182415202	3.60885679638145	up	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20284	chr9	46145838	46145949	-	46145838	46146557	A5SS	ENSMUST00000214729.2	novel	0.28	49	127	49	127	n	0.29	17	42	17	42	y	0.34	56	111	56	111	y	0.31	29	65	29	65	y	0.14	27	162	27	162	n	0.22	66	235	66	235	n	0.23	56	183	56	183	y	0.17	39	189	39	189	n	0.00576339066227009	4.6	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20286	chr9	46145838;46146016	46145949;46146557	-	46145838	46146557	cassetteExon	ENSMUST00000214729.2	novel	0.17	25.5	127	49;2	127	y	0.17	8.5	42	17;0	42	n	0.20	28.0	111	56;0	111	n	0.18	14.5	65	29;0	65	n	0.08	13.5	162	27;0	162	n	0.12	33.0	235	66;0	235	n	0.13	28.0	183	56;0	183	n	0.10	21.0	189	39;3	189	n	0.00253335432411659	5.51340097956296	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20437	chr9	57046992	57047138	+	57046992	57047154	A3SS	ENSMUST00000160147.8	novel	0.03	2	57	2	57	n	0.06	1	17	1	17	n	0.02	1	42	1	42	n	0.05	1	21	1	21	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.03	1	31	1	31	n	0.00	0	41	0	41	n	0.0345486933283661	2.75084790184853	up	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
novel_NIR_20493	chr9	62252275	62279002	+	62274625	62279002	5pMXE	ENSMUST00000136603.8	novel	1.00	10	0	10	0	y	-	-	-	-	-	-	0.92	12	1	12	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.0265104892265423	24	up	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20570	chr9	69255499	69269032	+	69255499	69269021	A3SS	ENSMUST00000034766.14	novel	0.12	6	42	6	42	n	0.08	2	24	2	24	n	0.16	5	27	5	27	y	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.08	2	22	2	22	n	0.0394383202664522	2.64494184146906	up	ENSMUSG00000032238.18	Rora	chr9	protein_coding	RAR-related orphan receptor alpha
novel_NIR_20592	chr9	69924205	69924426	+	69924205	69924355	A3SS	ENSMUST00000140265.8	novel	0.46	6	7	6	7	y	0.33	3	6	3	6	y	0.41	7	10	7	10	y	0.67	4	2	4	2	y	0.33	3	6	3	6	y	0.32	7	15	7	15	y	0.00	0	12	0	12	n	0.14	2	12	2	12	n	0.0457826483901626	2.51639574729478	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20844	chr9	98179033	98236075	+	98178785	98236075	A5SS	ENSMUST00000112938.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.0387968213685622	4.92800147686227	up	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_21177	chrX	48169628	48257509	-	48169628	48375722	A5SS	ENSMUST00000155770.8	novel	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.0232423089284126	6.44444444444444	up	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21203	chrX	49695981	49697355	-	49692402	49697355	A3SS	ENSMUST00000203933.3	novel	0.17	3	15	3	15	y	0.20	2	8	2	8	y	0.11	3	24	3	24	n	0.13	3	20	3	20	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00478842587843982	7.56611880994171	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21205	chrX	49697691	49700982	-	49697691	49701582	A5SS	ENSMUST00000203933.3	novel	0.32	19	40	19	40	n	0.38	12	20	12	20	n	0.36	14	25	14	25	n	0.39	12	19	12	19	n	0.22	8	28	8	28	n	0.21	4	15	4	15	n	0.23	6	20	6	20	n	0.32	10	21	10	21	n	0.0109097421492039	3.95811402901264	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21214	chrX	49720407	49723822	-	49719872	49723822	A3SS	ENSMUST00000124842.8	novel	0.05	3	55	3	55	n	0.21	6	23	6	23	n	0.16	7	37	7	37	n	0.16	6	31	6	31	y	0.00	0	39	0	39	n	0.00	0	52	0	52	n	0.03	1	38	1	38	n	0.00	0	37	0	37	n	0.0239401915008554	3.97273315183038	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21215	chrX	51180677	51233065	-	51180677	51253493	A5SS	ENSMUST00000033450.3	novel	0.18	33	151	33	151	y	0.23	25	85	25	85	y	0.13	18	117	18	117	n	0.15	21	118	21	118	y	0.08	6	70	6	70	n	0.12	14	106	14	106	n	0.10	7	61	7	61	n	0.06	7	119	7	119	n	0.0231922518265646	3.26216091127874	up	ENSMUSG00000031119.5	Gpc4	chrX	protein_coding	glypican 4
novel_NIR_21224	chrX	59281797	59281917	-	59271153	59281917	A3SS	ENSMUST00000033480.13	novel	0.15	16	90	16	90	n	0.19	4	17	4	17	y	0.20	15	59	15	59	n	0.14	6	37	6	37	n	0.08	5	60	5	60	n	0.07	8	115	8	115	n	0.06	3	48	3	48	n	0.09	9	92	9	92	n	0.0037563545846254	5.91062465996342	up	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
