X.ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLP_1.Ratio	CLP_1.Alt_average_sj	CLP_1.Model_average_sj	CLP_1.Alt_sj	CLP_1.Model_sj	CLP_1.isfiltered	CLP_2.Ratio	CLP_2.Alt_average_sj	CLP_2.Model_average_sj	CLP_2.Alt_sj	CLP_2.Model_sj	CLP_2.isfiltered	CLP_3.Ratio	CLP_3.Alt_average_sj	CLP_3.Model_average_sj	CLP_3.Alt_sj	CLP_3.Model_sj	CLP_3.isfiltered	CLP_4.Ratio	CLP_4.Alt_average_sj	CLP_4.Model_average_sj	CLP_4.Alt_sj	CLP_4.Model_sj	CLP_4.isfiltered	Sham_1.Ratio	Sham_1.Alt_average_sj	Sham_1.Model_average_sj	Sham_1.Alt_sj	Sham_1.Model_sj	Sham_1.isfiltered	Sham_2.Ratio	Sham_2.Alt_average_sj	Sham_2.Model_average_sj	Sham_2.Alt_sj	Sham_2.Model_sj	Sham_2.isfiltered	Sham_3.Ratio	Sham_3.Alt_average_sj	Sham_3.Model_average_sj	Sham_3.Alt_sj	Sham_3.Model_sj	Sham_3.isfiltered	Sham_4.Ratio	Sham_4.Alt_average_sj	Sham_4.Model_average_sj	Sham_4.Alt_sj	Sham_4.Model_sj	Sham_4.isfiltered	Pvalue	Tvalue	DiffType	Gene	Symbol	Chr	GeneType	Description
known_NIR_20	chr1	105592358	105592699	+	105592358	105605888	A3SS	ENSMUST00000186807.7	known	0.24	4	13	4	13	y	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.17	2	10	2	10	y	0.41	7	10	7	10	y	0.43	3	4	3	4	n	0.27	4	11	4	11	y	0.18	2	9	2	9	y	0.0481772129180475	-2.4873919361588	down	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
known_NIR_50	chr1	121234692;121247701	121247326;121255420	-	121234692;121240054	121234869;121255420	MXE	ENSMUST00000186915.2	known	0.07	20.0	269.5	2;38	539;0	n	0.04	13.5	345.0	10;17	690;0	n	0.07	26.0	351.0	5;47	702;0	n	0.05	12.5	227.5	0;25	455;0	n	0.08	12.0	145.0	0;24	290;0	n	0.14	26.5	168.5	2;51	337;0	n	0.09	16.5	164.5	0;33	328;1	n	0.10	21.0	179.0	5;37	357;1	n	0.0329715308909293	-2.97260216584117	down	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_59	chr1	121247701	121255295	-	121247701	121260221	A5SS	ENSMUST00000071064.13	known	0.12	14	99	14	99	y	0.05	9	188	9	188	y	0.13	23	155	23	155	y	0.12	15	106	15	106	y	0.16	11	57	11	57	y	0.33	20	40	20	40	y	0.27	15	40	15	40	y	0.31	18	41	18	41	y	0.0156443976694709	-3.8502677054341	down	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_94	chr1	131109991	131139994	-	131109991	131127590	5pMXE	ENSMUST00000068564.15	known	0.82	9	2	9	2	y	0.67	2	1	2	1	n	0.82	9	2	9	2	y	0.62	5	3	5	3	n	1.00	8	0	8	0	n	0.87	13	2	13	2	y	0.85	11	2	11	2	y	1.00	11	0	11	0	n	0.0253207945109978	-3.00966030514986	down	ENSMUSG00000026430.17	Rassf5	chr1	protein_coding	Ras association (RalGDS/AF-6) domain family member 5
known_NIR_95	chr1	131135461	131139994	-	131109991	131139994	A3SS	ENSMUST00000027688.15	known	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.28	5	13	5	13	y	0.15	2	11	2	11	y	0.15	2	11	2	11	y	0.0138540174438255	-3.44166680876217	down	ENSMUSG00000026430.17	Rassf5	chr1	protein_coding	Ras association (RalGDS/AF-6) domain family member 5
known_NIR_169	chr1	136202638	136204276	-	136202611	136204276	A3SS	ENSMUST00000048309.12	known	0.04	1	27	1	27	n	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.06	1	17	1	17	n	0.11	2	17	2	17	y	0.08	2	24	2	24	y	0.10	1	9	1	9	n	0.05	1	19	1	19	n	0.0436933819042273	-2.54657219416999	down	ENSMUSG00000041570.15	Camsap2	chr1	protein_coding	calmodulin regulated spectrin-associated protein family, member 2
known_NIR_221	chr1	152644684	152650011	+	152644684;152647291	152647115;152650011	ES	ENSMUST00000077755.11	known	0.00	0	254.0	0	221;287	n	0.01	2	136.5	2	120;153	y	0.01	2	210.5	2	182;239	y	0.00	0	144.5	0	131;158	n	0.02	3	125.0	3	104;146	y	0.01	2	237.5	2	204;271	y	0.01	1	166.5	1	143;190	n	0.02	5	205.5	5	170;241	y	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000008475.14	Arpc5	chr1	protein_coding	actin related protein 2/3 complex, subunit 5
known_NIR_224	chr1	152722014	152724485	-	152722014	152724347	A5SS	ENSMUST00000073441.13	known	0.84	42	8	42	8	y	0.83	24	5	24	5	y	0.76	22	7	22	7	y	0.85	23	4	23	4	y	0.92	24	2	24	2	y	0.89	34	4	34	4	y	0.96	26	1	26	1	n	0.89	33	4	33	4	y	0.0120235227996796	-3.61222822798953	down	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_559	chr1	185821756	185846461	-	185821756;185832559	185832390;185846461	ES	ENSMUST00000045388.8	known	0.02	1	49.5	1	61;38	n	0.03	1	29.5	1	32;27	n	0.08	4	45.5	4	61;30	y	0.00	0	31.5	0	34;29	n	0.04	2	44.0	2	51;37	y	0.21	12	46.5	12	58;35	y	0.19	8	35.0	8	39;31	y	0.18	9	40.0	9	56;24	y	0.0431680141962206	-2.88902506339383	down	ENSMUSG00000039246.9	Lyplal1	chr1	protein_coding	lysophospholipase-like 1
known_NIR_647	chr1	36213211	36213977	-	36213291	36213977	A3SS	ENSMUST00000046875.14	known	0.00	0	162	0	162	n	0.00	0	105	0	105	n	0.01	1	87	1	87	n	0.01	1	108	1	108	n	0.02	1	40	1	40	n	0.06	5	81	5	81	y	0.03	2	57	2	57	y	0.03	2	61	2	61	y	0.0345840183550241	-3.286335345031	down	ENSMUSG00000037470.15	Uggt1	chr1	protein_coding	UDP-glucose glycoprotein glucosyltransferase 1
known_NIR_679	chr1	37411500	37416659	+	37411500;37413370	37413353;37416659	ES	ENSMUST00000027287.11	known	0.38	9	14.5	9	14;15	y	0.64	8	4.5	8	4;5	y	0.64	14	8.0	14	7;9	y	0.46	9	10.5	9	9;12	y	0.84	8	1.5	8	2;1	n	0.80	18	4.5	18	4;5	y	0.62	5	3.0	5	2;4	y	0.79	23	6.0	23	6;6	y	0.0320574609093406	-2.84619798322697	down	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_699	chr1	37929665	37933020	+	37932104	37933020	A5SS&ES	ENSMUST00000160082.3	known	0.16	56	285	56	285	y	0.09	15	154	15	154	y	0.20	54	216	54	216	y	0.16	26	141	26	141	y	0.21	46	174	46	174	y	0.22	69	238	69	238	y	0.21	65	244	65	244	y	0.25	63	192	63	192	y	0.04744011522252	-2.82842712474619	down	ENSMUSG00000026087.12	Mrpl30	chr1	protein_coding	mitochondrial ribosomal protein L30
known_NIR_820	chr1	58483798	58484491	-	58483798	58484305	A5SS	ENSMUST00000114348.8	known	0.04	1	24	1	24	n	0.06	1	16	1	16	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.19	3	13	3	13	y	0.11	4	34	4	34	y	0.11	3	25	3	25	y	0.21	5	19	5	19	y	0.00864549743323433	-4.29375868399281	down	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_854	chr1	62825460	62854492	+	62851743	62854492	A5SS&ES	ENSMUST00000114157.3	known	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.13	2	13	2	13	y	0.18	2	9	2	9	y	0.50	2	2	2	2	n	0.71	5	2	5	2	n	0.29	2	5	2	5	n	0.50	1	1	1	1	n	0.0251643575022984	-3.84974191609163	down	ENSMUSG00000025969.16	Nrp2	chr1	protein_coding	neuropilin 2
known_NIR_903	chr1	71636546	71637533	-	71636831	71637533	A3SS	ENSMUST00000187938.7	known	0.55	1898	1551	1898	1551	y	0.52	1126	1024	1126	1024	y	0.59	1736	1192	1736	1192	y	0.51	1208	1160	1208	1160	y	0.62	877	537	877	537	y	0.61	1411	896	1411	896	y	0.59	931	635	931	635	y	0.61	1174	755	1174	755	y	0.0301055323970493	-3.41396725435278	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_904	chr1	71636546	71637533	-	71636906	71637533	A3SS	ENSMUST00000188894.7	known	0.58	1898	1375	1898	1375	y	0.39	1126	1769	1126	1769	y	0.60	1736	1154	1736	1154	y	0.45	1208	1455	1208	1455	y	0.70	877	371	877	371	y	0.66	1411	737	1411	737	y	0.71	931	376	931	376	y	0.70	1174	509	1174	509	y	0.0314192791174076	-3.60983213333917	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_907	chr1	71636831	71637533	-	71636906	71637533	A3SS	ENSMUST00000188894.7	known	0.53	1551	1375	1551	1375	y	0.37	1024	1769	1024	1769	y	0.51	1192	1154	1192	1154	y	0.44	1160	1455	1160	1455	y	0.59	537	371	537	371	y	0.55	896	737	896	737	y	0.63	635	376	635	376	y	0.60	755	509	755	509	y	0.0292370343866088	-3.25424005398829	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_908	chr1	71641656	71644129	-	71641656;71643088	71642819;71644129	ES	ENSMUST00000188894.7	known	0.99	3754	27.0	3754	30;24	y	0.98	2634	63.5	2634	70;57	y	0.99	2467	19.5	2467	27;12	y	0.99	2664	32.0	2664	41;23	y	1.00	1141	3.5	1141	4;3	y	1.00	1955	6.5	1955	7;6	y	1.00	1168	2.5	1168	2;3	y	1.00	1610	6.5	1610	8;5	y	0.0153924380733025	-4.99999999999998	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_915	chr1	71927873	71929463	+	71927873	71928791	3pMXE	ENSMUST00000187594.7	known	0.85	285	49	285	49	y	0.83	243	50	243	50	y	0.86	280	44	280	44	y	0.79	195	51	195	51	y	0.92	168	15	168	15	y	0.90	263	30	263	30	y	0.88	198	26	198	26	y	0.90	189	20	189	20	y	0.0142667925258861	-3.85714285714286	down	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
known_NIR_992	chr1	75412655	75413422	+	75412956	75413422	A5SS	ENSMUST00000145166.8	known	0.37	41	69	41	69	y	0.40	28	42	28	42	y	0.50	40	40	40	40	y	0.39	28	43	28	43	y	0.66	29	15	29	15	y	0.63	33	19	33	19	y	0.53	21	19	21	19	y	0.49	39	40	39	40	y	0.019491116691839	-3.27326835353989	down	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1017	chr1	82713228	82728241	+	82724863	82728241	5pMXE	ENSMUST00000162794.2	known	0.37	40	67	40	67	y	0.35	22	40	22	40	y	0.39	58	92	58	92	y	0.51	37	36	37	36	y	0.51	41	40	41	40	y	0.54	78	66	78	66	y	0.56	67	52	67	52	y	0.51	64	62	64	62	y	0.0340103008001157	-3.2921346097961	down	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1079	chr1	87701953	87703479	+	87701953	87702535	3pMXE	ENSMUST00000129431.2	known	0.52	47	43	47	43	y	0.45	18	22	18	22	y	0.48	28	30	28	30	y	0.49	26	27	26	27	y	0.57	26	20	26	20	y	0.66	45	23	45	23	y	0.67	35	17	35	17	y	0.64	44	25	44	25	y	0.00234026230805751	-5.60315525728221	down	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1080	chr1	87701953	87703479	+	87701953;87702591	87702535;87703479	ES	ENSMUST00000027512.13	known	0.54	47	39.5	47	43;36	y	0.46	18	21.5	18	22;21	y	0.51	28	26.5	28	30;23	y	0.53	26	23.5	26	27;20	y	0.57	26	20.0	26	20;20	y	0.63	45	26.5	45	23;30	y	0.66	35	18.0	35	17;19	y	0.66	44	23.0	44	25;21	y	0.005259815055605	-4.33389071108769	down	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1104	chr1	88129222	88142766	+	88035521	88142766	A5SS	ENSMUST00000113138.8	known	0.14	33	207	33	207	y	0.21	25	96	25	96	y	0.20	63	254	63	254	y	0.17	23	109	23	109	y	0.23	45	149	45	149	y	0.26	85	242	85	242	y	0.27	75	206	75	206	y	0.20	55	219	55	219	y	0.0363767369407195	-2.68328157299975	down	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
known_NIR_1110	chr1	88140593	88142766	+	88035521	88142766	A5SS	ENSMUST00000113138.8	known	0.67	417	207	417	207	y	0.58	133	96	133	96	y	0.72	655	254	655	254	y	0.49	105	109	105	109	y	0.86	882	149	882	149	y	0.87	1605	242	1605	242	y	0.83	1037	206	1037	206	y	0.82	1027	219	1027	219	y	0.0173254822256567	-4.41275340779845	down	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
known_NIR_1111	chr1	88140593	88142766	+	88067053	88142766	A5SS	ENSMUST00000113135.6	known	0.51	417	393	417	393	y	0.47	133	151	133	151	y	0.65	655	358	655	358	y	0.34	105	207	105	207	y	0.73	882	331	882	331	y	0.77	1605	468	1605	468	y	0.75	1037	341	1037	341	y	0.70	1027	434	1027	434	y	0.0279166250158054	-3.73802647142405	down	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1180	chr1	93406790	93416850	+	93406790	93416846	A3SS	ENSMUST00000027495.15	known	0.00	0	50	0	50	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.10	3	26	3	26	y	0.08	4	45	4	45	y	0.06	2	30	2	30	y	0.03	1	38	1	38	n	0.0202357201766644	-4.52097913470618	down	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1270	chr10	116363854	116384938	-	116363854;116373353	116373126;116384938	ES	ENSMUST00000169576.8	known	0.72	28	11.0	28	20;2	y	0.73	11	4.0	11	8;0	n	0.69	24	11.0	24	18;4	y	0.73	15	5.5	15	9;2	y	0.87	24	3.5	24	7;0	n	0.81	23	5.5	23	11;0	n	0.80	20	5.0	20	8;2	y	0.81	34	8.0	34	16;0	n	0.00263394372741873	-5.64619500834758	down	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1310	chr10	122845536	122846399	-	122845536;122845835	122845818;122846399	ES	ENSMUST00000073792.11	known	0.66	75	38.5	75	36;41	y	0.73	61	22.0	61	21;23	y	0.78	96	26.5	96	27;26	y	0.78	50	14.0	50	13;15	y	0.88	46	6.0	46	8;4	y	0.84	95	18.0	95	17;19	y	0.85	54	9.5	54	9;10	y	0.78	95	26.5	95	25;28	y	0.0326924796252531	-2.83315298789931	down	ENSMUSG00000034602.16	Mon2	chr10	protein_coding	MON2 homolog, regulator of endosome to Golgi trafficking
known_NIR_1416	chr10	128328271;128328914	128328471;128329408	-	128328271	128329408	cassetteExon	ENSMUST00000218713.2	known	0.98	915.5	16	1831;0	16	n	0.98	511.5	8	1023;0	8	n	0.98	958.0	19	1916;0	19	n	0.98	516.0	10	1032;0	10	n	0.99	590.5	4	1181;0	4	n	1.00	893.0	3	1786;0	3	n	0.99	758.0	6	1515;1	6	n	0.99	775.0	5	1548;2	5	y	0.0153924380733025	-4.99999999999998	down	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1494	chr10	21870724	21870865	+	21868306	21870865	A5SS	ENSMUST00000150089.8	known	0.93	13	1	13	1	n	0.93	14	1	14	1	n	0.80	16	4	16	4	y	0.89	8	1	8	1	n	1.00	25	0	25	0	n	1.00	24	0	24	0	n	1.00	5	0	5	0	n	0.93	25	2	25	2	y	0.0453912417969827	-2.69149533850435	down	ENSMUSG00000019970.16	Sgk1	chr10	protein_coding	serum/glucocorticoid regulated kinase 1
known_NIR_1518	chr10	24707704	24718597	-	24707704	24711914	5pMXE	ENSMUST00000020169.9	known	0.23	36	118	36	118	y	0.20	14	56	14	56	y	0.35	43	79	43	79	y	0.18	20	90	20	90	y	0.65	34	18	34	18	y	0.53	68	61	68	61	y	0.43	22	29	22	29	y	0.45	58	70	58	70	y	0.00547265423235554	-4.38018795391567	down	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1530	chr10	29189360	29193503	+	29189293	29193503	A5SS	ENSMUST00000160399.8	known	0.11	6	49	6	49	y	0.13	2	13	2	13	y	0.06	2	34	2	34	y	0.04	1	22	1	22	n	0.17	8	40	8	40	y	0.13	6	40	6	40	y	0.18	7	31	7	31	y	0.21	10	38	10	38	y	0.0183505461927771	-3.27326835353989	down	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1622	chr10	57362697;57367025	57366954;57371994	+	57362697	57371994	cassetteExon	ENSMUST00000220353.2	known	0.05	3.5	63	1;6	63	n	0.05	0.5	10	1;0	10	n	0.07	2.5	33	1;4	33	n	0.02	0.5	32	0;1	32	n	0.10	3.0	28	2;4	28	y	0.06	2.5	39	3;2	39	y	0.08	2.0	24	0;4	24	n	0.12	4.0	30	2;6	30	y	0.0440470185868183	-2.57260968875712	down	ENSMUSG00000019878.9	Hsf2	chr10	protein_coding	heat shock factor 2
known_NIR_1634	chr10	59188081;59191242	59191172;59197683	+	59188081;59190232	59190162;59197683	MXE	ENSMUST00000009789.15	known	0.67	24.0	12.0	19;29	13;11	y	0.40	6.0	9.0	6;6	8;10	y	0.55	16.0	13.0	17;15	19;7	y	0.58	7.0	5.0	8;6	7;3	y	0.62	5.0	3.0	5;5	1;5	n	0.78	19.5	5.5	16;23	1;10	n	0.89	12.0	1.5	10;14	2;1	n	0.72	9.0	3.5	8;10	2;5	y	0.0438876891858979	-2.54328289299652	down	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
known_NIR_1697	chr10	62626821	62627995	-	62626821	62627984	A5SS	ENSMUST00000020268.7	known	0.84	21	4	21	4	y	0.75	9	3	9	3	y	0.71	12	5	12	5	y	0.78	14	4	14	4	y	0.89	16	2	16	2	y	0.84	21	4	21	4	y	0.83	10	2	10	2	y	0.88	15	2	15	2	y	0.0375252651670557	-2.89470384406204	down	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
known_NIR_1699	chr10	62803521	62805559	+	62803521	62805555	A3SS	ENSMUST00000131422.8	known	0.08	3	35	3	35	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.14	3	18	3	18	y	0.17	5	24	5	24	y	0.04	1	22	1	22	n	0.11	3	25	3	25	y	0.0358512400031659	-2.77143483846	down	ENSMUSG00000036875.16	Dna2	chr10	protein_coding	DNA replication helicase/nuclease 2
known_NIR_1720	chr10	69049205	69051132	+	68991361	69051132	A5SS	ENSMUST00000167286.8	known	0.44	15	19	15	19	y	0.35	8	15	8	15	y	0.27	6	16	6	16	y	0.35	6	11	6	11	y	0.62	10	6	10	6	y	0.69	29	13	29	13	y	0.73	22	8	22	8	y	0.55	11	9	11	9	y	0.00146846409871284	-5.59583267515531	down	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1805	chr10	77458250;77466728	77466560;77477294	+	77458250	77477294	cassetteExon	ENSMUST00000172813.2	known	0.99	151.5	1	164;139	1	n	0.99	123.5	1	128;119	1	n	0.98	130.5	3	137;124	3	y	0.98	104.5	2	128;81	2	y	0.99	73.0	1	73;73	1	n	1.00	82.5	0	79;86	0	n	1.00	99.5	0	103;96	0	n	0.99	76.0	1	76;76	1	n	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000009293.18	Ube2g2	chr10	protein_coding	ubiquitin-conjugating enzyme E2G 2
known_NIR_1842	chr10	79386240	79390380	-	79386240	79390908	A5SS	ENSMUST00000062855.15	known	0.38	3	5	3	5	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.55	6	5	6	5	y	0.0421998607440938	-2.64928486131057	down	ENSMUSG00000042570.15	Mier2	chr10	protein_coding	MIER family member 2
known_NIR_1855	chr10	79574244	79574516	-	79574284	79574516	A3SS	ENSMUST00000159082.8	known	0.00	0	44	0	44	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.09	2	20	2	20	y	0.05	2	38	2	38	y	0.05	1	19	1	19	n	0.02	1	44	1	44	n	0.0353528470025174	-3.65563077506965	down	ENSMUSG00000020329.13	Polrmt	chr10	protein_coding	polymerase (RNA) mitochondrial (DNA directed)
known_NIR_2010	chr10	82062427	82063279	-	82062427	82063365	A5SS	ENSMUST00000041264.15	known	0.50	2	2	2	2	n	-	-	-	-	-	-	0.57	4	3	4	3	n	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.62	8	5	8	5	y	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.0484404716855963	-3.04645099891797	down	ENSMUSG00000062931.16	Zfp938	chr10	protein_coding	zinc finger protein 938
known_NIR_2077	chr10	89627343	89638881	+	89627343;89630486	89630345;89638881	ES	ENSMUST00000020112.7	known	0.06	4	65.5	4	66;65	y	0.00	0	18.0	0	21;15	n	0.07	3	37.0	3	41;33	y	0.00	0	30.5	0	38;23	n	0.16	5	26.5	5	25;28	y	0.06	3	46.0	3	53;39	y	0.19	6	25.5	6	30;21	y	0.14	7	44.5	7	42;47	y	0.024258901556717	-3.12471400905369	down	ENSMUSG00000019951.11	Uhrf1bp1l	chr10	protein_coding	UHRF1 (ICBP90) binding protein 1-like
known_NIR_2101	chr10	93908483	93910045	+	93881495	93910045	A5SS	ENSMUST00000020208.5	known	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.08	2	24	2	24	y	0.25	2	6	2	6	n	0.24	10	32	10	32	y	0.14	3	18	3	18	y	0.28	8	21	8	21	y	0.0192325541132549	-3.25950766894365	down	ENSMUSG00000020021.5	Fgd6	chr10	protein_coding	FYVE, RhoGEF and PH domain containing 6
known_NIR_2197	chr11	101865765	101875438	-	101865765	101872443	5pMXE	ENSMUST00000125794.2	known	0.01	1	79	1	79	n	0.03	1	39	1	39	n	0.02	1	55	1	55	n	0.00	0	45	0	45	n	0.12	4	30	4	30	y	0.04	3	79	3	79	y	0.07	3	37	3	37	y	0.07	3	41	3	41	y	0.0292398510583222	-3.3717089216941	down	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
known_NIR_2198	chr11	101865765	101875438	-	101865765;101872669	101872443;101875438	ES	ENSMUST00000003612.13	known	0.01	1	70.0	1	79;61	n	0.02	1	43.0	1	39;47	n	0.02	1	50.0	1	55;45	n	0.00	0	37.0	0	45;29	n	0.14	4	24.5	4	30;19	y	0.04	3	69.0	3	79;59	y	0.08	3	35.0	3	37;33	y	0.06	3	44.0	3	41;47	y	0.0490344112514131	-3.05063648747657	down	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
known_NIR_2322	chr11	107517540	107518176	+	107517540	107518179	A3SS	ENSMUST00000100305.8	known	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.30	3	7	3	7	y	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.0253967587393477	-2.96560082843521	down	ENSMUSG00000020721.17	Helz	chr11	protein_coding	helicase with zinc finger domain
known_NIR_2354	chr11	113620491	113630105	-	113620491	113641556	A5SS	ENSMUST00000106616.2	known	0.15	4	23	4	23	y	0.00	0	17	0	17	n	0.10	3	28	3	28	y	0.05	1	21	1	21	n	0.18	3	14	3	14	y	0.20	9	37	9	37	y	0.22	6	21	6	21	y	0.12	3	23	3	23	y	0.0406036023602296	-2.70358877516411	down	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2355	chr11	113620491	113630105	-	113620491	113642514	A5SS	ENSMUST00000053536.5	known	0.07	4	52	4	52	y	0.00	0	16	0	16	n	0.10	3	27	3	27	y	0.06	1	15	1	15	n	0.23	3	10	3	10	y	0.17	9	43	9	43	y	0.20	6	24	6	24	y	0.08	3	35	3	35	y	0.0321580765225448	-2.91487624034083	down	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2364	chr11	114742812	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	known	0.88	29	4	29	4	y	0.85	11	2	11	2	y	0.94	16	1	16	1	n	0.92	12	1	12	1	n	1.00	15	0	15	0	n	1.00	18	0	18	0	n	0.93	13	1	13	1	n	1.00	29	0	29	0	n	0.0194848631636447	-3.18439175937776	down	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2368	chr11	114743099	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	known	0.78	14	4	14	4	y	0.80	8	2	8	2	y	0.95	20	1	20	1	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	1.00	20	0	20	0	n	0.90	9	1	9	1	n	1.00	15	0	15	0	n	0.0300486177291841	-2.96363501972164	down	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2395	chr11	115320231;115320608	115320461;115320712	+	115320231	115320712	cassetteExon	ENSMUST00000123345.2	known	0.55	6.0	5	8;4	5	y	0.67	2.0	1	2;2	1	n	0.41	3.5	5	2;5	5	y	0.64	3.5	2	2;5	2	n	0.74	8.5	3	7;10	3	y	0.72	13.0	5	16;10	5	y	0.82	4.5	1	3;6	1	n	0.86	12.5	2	3;22	2	y	0.0246752539361364	-3.24304936015247	down	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
known_NIR_2445	chr11	116072846	116080241	-	116072846;116074450	116074290;116080241	ES	ENSMUST00000148601.2	known	0.64	1173	657.5	1173	1275;40	y	0.53	453	402.5	453	780;25	y	0.67	1319	646.5	1319	1256;37	y	0.59	614	434.0	614	846;22	y	0.73	1033	380.5	1033	739;22	y	0.76	2232	714.5	2232	1389;40	y	0.74	1125	392.5	1125	747;38	y	0.69	1381	612.5	1381	1176;49	y	0.0199663538655403	-3.60255164825966	down	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2449	chr11	116074450;116080401	116080241;116089048	-	116074450	116089048	cassetteExon	ENSMUST00000066587.12	known	0.36	583.5	1054	40;1127	1054	y	0.28	261.0	661	25;497	661	y	0.36	581.0	1055	37;1125	1055	y	0.28	284.5	733	22;547	733	y	0.44	446.0	579	22;870	579	y	0.44	932.0	1175	40;1824	1175	y	0.46	502.0	601	38;966	601	y	0.39	647.0	1010	49;1245	1010	y	0.00892591393876503	-4.09090909090909	down	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2468	chr11	116734600	116739080	+	116734600	116736589	3pMXE	ENSMUST00000128784.2	known	0.75	58	19	58	19	y	0.80	37	9	37	9	y	0.70	71	31	71	31	y	0.81	35	8	35	8	y	0.90	54	6	54	6	y	0.89	79	10	79	10	y	0.83	54	11	54	11	y	0.83	68	14	68	14	y	0.0237957727625993	-3.08643743390384	down	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2602	chr11	120602721	120604519	-	120602721;120603538	120603266;120604519	ES	ENSMUST00000106154.8	known	0.91	129	13.0	129	19;7	y	0.86	51	8.0	51	13;3	y	0.93	137	10.5	137	12;9	y	0.86	43	7.0	43	10;4	y	0.97	107	3.0	107	4;2	y	0.93	134	10.0	134	16;4	y	0.95	140	8.0	140	9;7	y	0.97	109	3.5	109	7;0	n	0.0265015839444136	-3.21666578548505	down	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
known_NIR_2619	chr11	121181716	121186855	+	121181716	121187049	A3SS	ENSMUST00000153579.2	known	0.97	39	1	39	1	n	0.96	22	1	22	1	n	0.93	26	2	26	2	y	0.90	19	2	19	2	y	1.00	11	0	11	0	n	1.00	28	0	28	0	n	1.00	11	0	11	0	n	1.00	19	0	19	0	n	0.0321194160504166	-3.79473319220206	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
known_NIR_2765	chr11	40626893	40627395	+	40626893	40627320	A3SS	ENSMUST00000020578.11	known	0.00	0	92	0	92	n	0.04	3	72	3	72	y	0.04	5	109	5	109	y	0.02	1	42	1	42	n	0.05	3	62	3	62	y	0.08	9	105	9	105	y	0.08	8	90	8	90	y	0.08	8	94	8	94	y	0.00885240562272023	-3.90557564601693	down	ENSMUSG00000020328.11	Nudcd2	chr11	protein_coding	NudC domain containing 2
known_NIR_2784	chr11	46327836	46331390	+	46330802	46331390	A5SS&ES	ENSMUST00000109232.4	known	0.00	0	65	0	65	n	0.03	1	35	1	35	n	0.02	1	60	1	60	n	0.00	0	25	0	25	n	0.10	3	28	3	28	y	0.02	1	55	1	55	n	0.06	2	31	2	31	y	0.09	4	43	4	43	y	0.047411421627455	-2.82453925057203	down	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2806	chr11	4824103	4833368	+	4833253	4833368	5pMXE	ENSMUST00000139737.2	known	0.88	377	50	377	50	y	0.82	76	17	76	17	y	0.90	334	37	334	37	y	0.77	102	31	102	31	y	0.95	336	19	336	19	y	0.95	471	24	471	24	y	0.95	325	16	325	16	y	0.93	395	30	395	30	y	0.0384065871447074	-3.42062802065417	down	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2828	chr11	49763726;49765162	49765091;49769058	+	49763726;49764734	49764663;49769058	MXE	ENSMUST00000109179.9	known	0.85	86.0	15.5	93;79	12;19	y	0.88	48.5	6.5	51;46	5;8	y	0.91	83.5	8.5	77;90	6;11	y	0.92	64.0	5.5	53;75	4;7	y	0.97	95.5	3.0	88;103	2;4	y	0.93	88.0	6.5	86;90	4;9	y	0.92	59.0	5.0	48;70	3;7	y	0.95	105.5	6.0	101;110	9;3	y	0.0388104344626247	-2.71865066761325	down	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
known_NIR_2878	chr11	51158158	51162627	+	51158158;51159058	51158992;51162627	ES	ENSMUST00000130641.8	known	0.86	57	9.0	57	10;8	y	0.79	28	7.5	28	10;5	y	0.78	45	12.5	45	17;8	y	0.85	32	5.5	32	8;3	y	0.89	33	4.0	33	8;0	n	0.94	64	4.0	64	7;1	n	0.85	38	6.5	38	9;4	y	0.88	53	7.5	53	11;4	y	0.0450869074685041	-2.52810291480115	down	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2925	chr11	54830561	54846847	-	54830561	54831537	A5SS&ES	ENSMUST00000155316.2	known	0.10	2	18	2	18	y	0.33	4	8	4	8	y	0.06	1	15	1	15	n	0.08	1	11	1	11	n	0.30	3	7	3	7	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.31	4	9	4	9	y	0.0354175869389084	-2.76457613112503	down	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2926	chr11	54830561	54846847	-	54830561;54831708	54831537;54846847	ES	ENSMUST00000108889.10	known	0.14	2	12.5	2	18;7	y	0.35	4	7.5	4	8;7	y	0.07	1	12.5	1	15;10	n	0.09	1	10.0	1	11;9	n	0.35	3	5.5	3	7;4	y	0.50	6	6.0	6	6;6	y	0.36	4	7.0	4	8;6	y	0.38	4	6.5	4	9;4	y	0.0263148551385807	-3.21912774281333	down	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2927	chr11	54830561	54846847	-	54831708	54846847	3pMXE	ENSMUST00000151736.2	known	0.22	2	7	2	7	n	0.36	4	7	4	7	y	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.43	3	4	3	4	n	0.50	6	6	6	6	y	0.40	4	6	4	6	y	0.50	4	4	4	4	n	0.0181492464442193	-3.8948834400661	down	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_3026	chr11	60098083	60101162	-	60098083	60111279	A5SS	ENSMUST00000020846.8	known	0.71	110	46	110	46	y	0.42	11	15	11	15	y	0.55	43	35	43	35	y	0.50	21	21	21	21	y	0.87	184	27	184	27	y	0.87	295	45	295	45	y	0.91	243	24	243	24	y	0.86	241	38	241	38	y	0.0108450787315017	-5.34860235667331	down	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
known_NIR_3164	chr11	69729475	69729746	+	69729399	69729746	A5SS	ENSMUST00000133967.8	known	0.87	811	121	811	121	y	0.86	333	53	333	53	y	0.83	779	156	779	156	y	0.87	354	52	354	52	y	0.89	572	73	572	73	y	0.90	861	92	861	92	y	0.88	720	96	720	96	y	0.89	821	103	821	103	y	0.0334976754042943	-3.15296312547233	down	ENSMUSG00000070394.11	Tmem256	chr11	protein_coding	transmembrane protein 256
known_NIR_3296	chr11	72326590;72327658	72327265;72327965	+	72326590	72327965	cassetteExon	ENSMUST00000108499.2	known	0.84	109.0	21	85;133	21	y	0.79	41.5	11	21;62	11	y	0.77	99.0	29	52;146	29	y	0.78	53.5	15	31;76	15	y	0.82	80.0	18	39;121	18	y	0.90	112.5	13	74;151	13	y	0.84	83.0	16	51;115	16	y	0.88	92.0	13	70;114	13	y	0.0359666677486888	-2.71068738274197	down	ENSMUSG00000040471.18	Ggt6	chr11	protein_coding	gamma-glutamyltransferase 6
known_NIR_3342	chr11	75547027	75548318	+	75542491	75548318	A5SS	ENSMUST00000069057.13	known	0.13	4	26	4	26	y	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.11	2	16	2	16	y	0.40	2	3	2	3	n	0.12	3	21	3	21	y	0.40	6	9	6	9	y	0.33	7	14	7	14	y	0.0390878546762981	-2.89577062771634	down	ENSMUSG00000017774.20	Myo1c	chr11	protein_coding	myosin IC
known_NIR_3416	chr11	79132982	79135289	-	79134401	79135289	3pMXE	ENSMUST00000145772.8	known	0.26	29	84	29	84	y	0.17	8	40	8	40	y	0.25	28	82	28	82	y	0.31	19	42	19	42	y	0.40	21	32	21	32	y	0.47	26	29	26	29	y	0.40	18	27	18	27	y	0.52	77	70	77	70	y	0.00283316489663195	-4.85666795109812	down	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3420	chr11	79150248	79164603	-	79150248	79164488	A5SS	ENSMUST00000208339.2	known	0.58	19	14	19	14	y	0.36	4	7	4	7	y	0.59	24	17	24	17	y	0.32	11	23	11	23	y	0.61	11	7	11	7	y	0.64	18	10	18	10	y	0.83	10	2	10	2	y	0.67	26	13	26	13	y	0.0453579546490219	-2.60169218556159	down	ENSMUSG00000108822.2	Gm44787	chr11	lncRNA	predicted gene 44787
known_NIR_3499	chr11	85244059	85245714	+	85244059;85245505	85245420;85245714	ES	ENSMUST00000108061.8	known	0.74	13	4.5	13	5;4	y	0.75	6	2.0	6	2;2	y	0.76	8	2.5	8	3;2	y	0.62	5	3.0	5	3;3	y	0.89	4	0.5	4	0;1	n	1.00	13	0.0	13	0;0	n	0.89	4	0.5	4	1;0	n	0.80	6	1.5	6	2;1	n	0.0158499086279677	-3.38607503901281	down	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3648	chr11	98935738	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	known	0.31	5	11	5	11	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.57	8	6	8	6	y	1.00	6	0	6	0	n	0.0448791353751691	-2.66484480014131	down	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3651	chr11	98938229	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	known	0.39	7	11	7	11	y	0.44	4	5	4	5	n	0.31	4	9	4	9	y	0.55	6	5	6	5	y	0.73	8	3	8	3	y	0.70	14	6	14	6	y	0.67	12	6	12	6	y	1.00	4	0	4	0	n	0.0109030121767186	-3.86967584720482	down	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3670	chr12	101017921	101019688	-	101017921	101019727	A5SS	ENSMUST00000048305.10	known	0.20	22	90	22	90	y	0.13	6	40	6	40	y	0.12	8	58	8	58	y	0.17	7	34	7	34	y	0.32	10	21	10	21	y	0.24	13	42	13	42	y	0.23	10	33	10	33	y	0.33	31	62	31	62	y	0.00977137104390526	-3.90434404721515	down	ENSMUSG00000041846.16	Ppp4r3a	chr12	protein_coding	protein phosphatase 4 regulatory subunit 3A
known_NIR_3757	chr12	110452386	110488925	+	110432454	110488925	A5SS	ENSMUST00000220509.2	known	0.34	64	122	64	122	y	0.15	15	82	15	82	y	0.23	35	114	35	114	y	0.26	24	67	24	67	y	0.41	29	42	29	42	y	0.37	62	107	62	107	y	0.43	42	55	42	55	y	0.48	48	52	48	52	y	0.0121505002184951	-3.90644891017278	down	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
known_NIR_3763	chr12	110745912	110759548	+	110745912	110769839	A3SS	ENSMUST00000193053.6	known	0.37	25	43	25	43	y	0.17	4	20	4	20	y	0.26	11	32	11	32	y	0.35	15	28	15	28	y	0.32	8	17	8	17	y	0.50	22	22	22	22	y	0.51	19	18	19	18	y	0.46	26	30	26	30	y	0.0453278130670544	-2.52064895371808	down	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
known_NIR_3788	chr12	111508744;111509275	111509214;111509534	+	111508744	111509534	cassetteExon	ENSMUST00000222388.2	known	0.97	341.5	10	2;681	10	y	0.96	161.5	6	1;322	6	n	0.98	328.5	8	4;653	8	y	0.97	182.5	5	0;365	5	n	1.00	230.5	1	2;459	1	n	0.99	352.0	3	0;704	3	n	0.99	257.5	3	1;514	3	n	0.98	315.0	5	3;627	5	y	0.013399964712331	-3.46410161513775	down	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3827	chr12	112645379	112645810	+	112645379	112645988	A3SS	ENSMUST00000174780.2	known	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.85	11	2	11	2	y	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.0144331242263267	-3.7570182486337	down	ENSMUSG00000037638.6	Zbtb42	chr12	protein_coding	zinc finger and BTB domain containing 42
known_NIR_3830	chr12	112898670	112902415	-	112898670	112901976	A5SS	ENSMUST00000222793.2	known	0.05	4	83	4	83	y	0.00	0	26	0	26	n	0.02	2	111	2	111	y	0.00	0	34	0	34	n	0.08	5	58	5	58	y	0.10	10	88	10	88	y	0.03	3	89	3	89	y	0.07	5	68	5	68	y	0.0335161851116514	-2.78151794983659	down	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3831	chr12	112898670	112902415	-	112898670;112902177	112901976;112902415	ES	ENSMUST00000002881.5	known	0.08	4	45.0	4	83;7	y	0.00	0	15.0	0	26;4	n	0.03	2	65.5	2	111;20	y	0.00	0	19.0	0	34;4	n	0.14	5	31.5	5	58;5	y	0.16	10	52.0	10	88;16	y	0.06	3	50.0	3	89;11	y	0.11	5	40.0	5	68;12	y	0.0209786704903525	-3.12551503293546	down	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3832	chr12	112898670	112902415	-	112898670;112902213	112901976;112902415	ES	ENSMUST00000221397.2	known	0.05	4	82.5	4	83;82	y	0.00	0	26.0	0	26;26	n	0.02	2	98.5	2	111;86	y	0.00	0	31.5	0	34;29	n	0.08	5	59.0	5	58;60	y	0.10	10	86.0	10	88;84	y	0.03	3	85.5	3	89;82	y	0.07	5	70.0	5	68;72	y	0.0335161851116514	-2.78151794983659	down	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3955	chr12	4935858	4944538	-	4935858;4941421	4941315;4944538	ES	ENSMUST00000020962.12	known	0.12	11	84.5	11	85;84	y	0.08	4	48.0	4	51;45	y	0.07	6	74.0	6	77;71	y	0.06	3	50.5	3	47;54	y	0.15	7	39.5	7	40;39	y	0.09	7	70.0	7	77;63	y	0.14	7	41.5	7	45;38	y	0.15	10	58.0	10	64;52	y	0.0427556406258754	-2.56776295506548	down	ENSMUSG00000020634.13	Ubxn2a	chr12	protein_coding	UBX domain protein 2A
known_NIR_4001	chr12	59184572	59193122	+	59184572	59191485	3pMXE	ENSMUST00000175803.2	known	0.18	94	427	94	427	y	0.09	23	231	23	231	y	0.15	73	410	73	410	y	0.11	30	235	30	235	y	0.22	71	257	71	257	y	0.21	121	456	121	456	y	0.22	69	241	69	241	y	0.17	88	419	88	419	y	0.027932036985044	-3.09728201711373	down	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4002	chr12	59184572	59193122	+	59184572;59191556	59191485;59193122	ES	ENSMUST00000219140.3	known	0.18	94	428.0	94	427;429	y	0.10	23	216.0	23	231;201	y	0.15	73	402.5	73	410;395	y	0.12	30	222.0	30	235;209	y	0.21	71	269.0	71	257;281	y	0.21	121	446.5	121	456;437	y	0.22	69	243.5	69	241;246	y	0.18	88	400.5	88	419;382	y	0.0223373184728102	-3.45699575818819	down	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4006	chr12	59184572;59193148	59193122;59193633	+	59184572;59191556	59191485;59193633	MXE	ENSMUST00000175912.8	known	0.57	284.5	215.0	94;475	427;3	y	0.52	128.5	117.0	23;234	231;3	y	0.57	272.0	205.5	73;471	410;1	n	0.53	134.5	120.5	30;239	235;6	y	0.62	208.5	128.5	71;346	257;0	n	0.61	353.0	229.5	121;585	456;3	y	0.62	194.0	121.0	69;319	241;1	n	0.56	267.0	210.5	88;446	419;2	y	0.0304268593130369	-2.82453925057203	down	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4034	chr12	69629119	69629305	-	69629119	69629294	A5SS	ENSMUST00000058639.11	known	0.50	4	4	4	4	n	0.12	1	7	1	7	n	0.38	5	8	5	8	y	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.50	5	5	5	5	y	0.62	5	3	5	3	n	0.75	6	2	6	2	n	0.0355675717627169	-2.79444073657573	down	ENSMUSG00000049882.11	Vcpkmt	chr12	protein_coding	valosin containing protein lysine (K) methyltransferase
known_NIR_4135	chr12	80720068	80723906	+	80720068;80722708	80722623;80723906	ES	ENSMUST00000085245.7	known	0.00	0	54.5	0	65;44	n	0.00	0	41.0	0	41;41	n	0.00	0	41.5	0	53;30	n	0.00	0	40.0	0	45;35	n	0.07	2	28.0	2	30;26	y	0.07	5	68.5	5	75;62	y	0.11	5	39.0	5	42;36	y	0.08	4	45.5	4	57;34	y	0.00317866764575425	-8.71646397262368	down	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
known_NIR_4143	chr12	81184786	81197426	+	81184786	81197393	A3SS	ENSMUST00000110347.9	known	0.85	194	33	194	33	y	0.82	107	23	107	23	y	0.87	168	25	168	25	y	0.83	115	23	115	23	y	0.89	105	13	105	13	y	0.90	169	19	169	19	y	0.88	100	13	100	13	y	0.88	128	17	128	17	y	0.0196450179707787	-3.7263540204487	down	ENSMUSG00000021136.14	Smoc1	chr12	protein_coding	SPARC related  modular calcium binding 1
known_NIR_4148	chr12	81518945	81521361	-	81519125	81521361	A3SS	ENSMUST00000166664.2	known	0.12	20	153	20	153	y	0.10	12	107	12	107	y	0.16	31	159	31	159	y	0.18	22	103	22	103	y	0.19	26	108	26	108	y	0.22	35	127	35	127	y	0.19	29	125	29	125	y	0.18	30	140	30	140	y	0.0491063641754292	-2.72179412617966	down	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4219	chr12	84446186	84447604	-	84446186	84452180	A5SS	ENSMUST00000021662.12	known	0.58	94	68	94	68	y	0.52	22	20	22	20	y	0.57	77	58	77	58	y	0.55	21	17	21	17	y	0.65	61	33	61	33	y	0.67	141	68	141	68	y	0.68	77	37	77	37	y	0.64	77	43	77	43	y	0.000984127197643872	-6.53279567680169	down	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
known_NIR_4319	chr13	100138947;100146248	100146158;100151894	-	100138947	100151894	cassetteExon	ENSMUST00000221344.2	known	0.33	2.5	5	3;2	5	y	0.33	0.5	1	0;1	1	n	0.50	1.0	1	0;2	1	n	0.00	0.0	1	0;0	1	n	1.00	2.0	0	0;4	0	n	1.00	1.0	0	2;0	0	n	0.50	1.0	1	1;1	1	n	0.50	1.0	1	0;2	1	n	0.0454287709300454	-2.5802281578608	down	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
known_NIR_4357	chr13	103964531;103966839	103966696;103970006	-	103964531	103970006	cassetteExon	ENSMUST00000022222.12	known	0.16	17.0	90	10;24	90	y	0.13	6.5	43	8;5	43	y	0.16	14.0	72	10;18	72	y	0.17	8.5	43	6;11	43	y	0.27	19.5	52	19;20	52	y	0.24	24.0	75	18;30	75	y	0.26	15.5	44	17;14	44	y	0.16	14.5	76	7;22	76	y	0.0467728796005029	-2.93359338512578	down	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4358	chr13	103966839	103970006	-	103959914	103970006	A3SS	ENSMUST00000188997.7	known	0.45	24	29	24	29	y	0.24	5	16	5	16	y	0.40	18	27	18	27	y	0.55	11	9	11	9	y	0.69	20	9	20	9	y	0.54	30	26	30	26	y	0.58	14	10	14	10	y	0.61	22	14	22	14	y	0.0489415072883531	-2.70633286204647	down	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4393	chr13	114954859	114957338	+	114954859;114955993	114955872;114957338	ES	ENSMUST00000166104.9	known	0.08	33	396.5	33	284;509	y	0.07	12	149.0	12	126;172	y	0.09	33	339.0	33	256;422	y	0.08	14	169.5	14	116;223	y	0.12	36	256.0	36	193;319	y	0.12	48	362.5	48	283;442	y	0.09	27	263.5	27	200;327	y	0.13	52	342.5	52	264;421	y	0.0193317139068523	-3.65563077506965	down	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4394	chr13	114954859	114957338	+	114955993	114957338	A5SS&ES	ENSMUST00000184672.8	known	0.06	33	509	33	509	y	0.07	12	172	12	172	y	0.07	33	422	33	422	y	0.06	14	223	14	223	y	0.10	36	319	36	319	y	0.10	48	442	48	442	y	0.08	27	327	27	327	y	0.11	52	421	52	421	y	0.00824791810192661	-4.695048270345	down	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4439	chr13	12619350	12624457	+	12619350	12620584	3pMXE	ENSMUST00000221560.2	known	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	47	0	47	n	0.00	0	27	0	27	n	0.14	7	44	7	44	y	0.06	2	30	2	30	y	0.15	6	34	6	34	y	0.05	2	36	2	36	y	0.0314568678280041	-3.82546027838003	down	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
known_NIR_4440	chr13	12619350	12624457	+	12619350	12621716	3pMXE	ENSMUST00000071973.8	known	0.00	0	216	0	216	n	0.00	0	176	0	176	n	0.00	0	128	0	128	n	0.00	0	170	0	170	n	0.06	7	103	7	103	y	0.02	2	112	2	112	y	0.06	6	93	6	93	y	0.02	2	90	2	90	y	0.040519326353834	-3.46410161513775	down	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
known_NIR_4546	chr13	34115629	34119602	-	34115629	34119552	A5SS	ENSMUST00000171252.8	known	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.0201389618476639	-4.52903909476958	down	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4622	chr13	39127142	39138085	-	39127142;39128630	39128476;39138085	ES	ENSMUST00000021870.12	known	0.25	14	41.5	14	37;46	y	0.11	4	32.5	4	42;23	y	0.28	12	31.0	12	25;37	y	0.29	11	26.5	11	28;25	y	0.46	14	16.5	14	17;16	y	0.47	14	16.0	14	17;15	y	0.32	6	12.5	6	12;13	y	0.31	8	17.5	8	17;18	y	0.0398205992883747	-2.61668464433328	down	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4623	chr13	39127142	39138085	-	39128630	39138085	3pMXE	ENSMUST00000225331.2	known	0.23	14	46	14	46	y	0.15	4	23	4	23	y	0.24	12	37	12	37	y	0.31	11	25	11	25	y	0.47	14	16	14	16	y	0.48	14	15	14	15	y	0.32	6	13	6	13	y	0.31	8	18	8	18	y	0.0321634062114874	-2.86609790034041	down	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4727	chr13	54831902	54832151	-	54831963	54832151	A3SS	ENSMUST00000125871.8	known	0.14	3	19	3	19	y	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.08	1	11	1	11	n	0.33	3	6	3	6	n	0.15	3	17	3	17	y	0.44	8	10	8	10	y	0.38	8	13	8	13	y	0.0319279583649288	-3.28565656048487	down	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4795	chr13	58544713	58546970	-	58544713	58545567	5pMXE	ENSMUST00000177497.8	known	0.01	5	560	5	560	y	0.00	1	303	1	303	n	0.00	2	487	2	487	y	0.00	0	345	0	345	n	0.02	5	308	5	308	y	0.01	3	506	3	506	y	0.02	7	312	7	312	y	0.01	7	507	7	507	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4796	chr13	58544713	58546970	-	58544713;58545610	58545567;58546970	ES	ENSMUST00000116403.9	known	0.01	5	551.5	5	560;543	y	0.00	1	287.5	1	303;272	n	0.00	2	464.5	2	487;442	y	0.00	0	333.5	0	345;322	n	0.02	5	290.5	5	308;273	y	0.01	3	484.0	3	506;462	y	0.02	7	303.0	7	312;294	y	0.01	7	475.5	7	507;444	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4797	chr13	58544713	58546970	-	58545610	58546970	3pMXE	ENSMUST00000176558.2	known	0.01	5	543	5	543	y	0.00	1	272	1	272	n	0.00	2	442	2	442	y	0.00	0	322	0	322	n	0.02	5	273	5	273	y	0.01	3	462	3	462	y	0.02	7	294	7	294	y	0.02	7	444	7	444	y	0.00542395034130874	-4.24264068711929	down	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4890	chr13	64293494	64297884	-	64293494	64300203	A5SS	ENSMUST00000152644.9	known	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.44	4	5	4	5	n	0.22	2	7	2	7	n	0.62	5	3	5	3	n	0.50	6	6	6	6	y	0.0136641991366243	-3.50783565111135	down	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
known_NIR_4891	chr13	64293494	64297884	-	64293494	64300414	A5SS	ENSMUST00000059817.12	known	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	0.50	6	6	6	6	y	0.0327161846971191	-3.26187665861404	down	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
known_NIR_4931	chr13	67642848	67648021	-	67642848	67648490	A5SS	ENSMUST00000076123.12	known	0.07	1	13	1	13	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.29	2	5	2	5	n	0.45	5	6	5	6	y	0.80	4	1	4	1	n	0.25	1	3	1	3	n	0.0492114279089483	-2.84058397970397	down	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
known_NIR_4933	chr13	67642848;67648036	67648021;67648530	-	67642848	67648530	cassetteExon	ENSMUST00000171518.8	known	0.09	0.5	5	1;0	5	n	0.00	0.0	1	0;0	1	n	0.33	0.5	1	1;0	1	n	0.00	0.0	2	0;0	2	n	0.25	1.0	3	2;0	3	n	0.54	3.5	3	5;2	3	y	1.00	2.0	0	4;0	0	n	1.00	0.5	0	1;0	0	n	0.0410785293394676	-2.95949578689448	down	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
known_NIR_4948	chr13	73475588	73476397	-	73475588	73476458	A5SS	ENSMUST00000223293.2	known	0.06	46	772	46	772	y	0.06	26	432	26	432	y	0.08	83	916	83	916	y	0.04	16	435	16	435	y	0.09	64	681	64	681	y	0.07	72	963	72	963	y	0.09	84	831	84	831	y	0.09	76	776	76	776	y	0.0478566196408535	-2.61116483933547	down	ENSMUSG00000021606.9	Ndufs6	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S6
known_NIR_5134	chr14	121835168	121837100	-	121835165	121837100	A3SS	ENSMUST00000212376.3	known	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.47	7	8	7	8	y	0.67	2	1	2	1	n	0.59	10	7	10	7	y	0.00709863188122639	-4.30105598298922	down	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5155	chr14	20344860;20350747	20350655;20354021	+	20344860;20345334	20345156;20354021	MXE	ENSMUST00000225722.2	known	0.78	21.0	6.0	13;29	11;1	n	0.72	6.5	2.5	6;7	5;0	n	0.85	30.0	5.5	24;36	11;0	n	0.76	8.0	2.5	9;7	4;1	n	0.91	24.0	2.5	21;27	5;0	n	0.80	20.5	5.0	10;31	10;0	n	0.90	18.0	2.0	19;17	3;1	n	0.88	29.5	4.0	21;38	8;0	n	0.042402770850646	-2.57368475361867	down	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5191	chr14	20724805	20726026	+	20724456	20726026	A5SS	ENSMUST00000048657.10	known	0.41	29	41	29	41	y	0.34	14	27	14	27	y	0.35	17	31	17	31	y	0.28	10	26	10	26	y	0.45	13	16	13	16	y	0.58	31	22	31	22	y	0.44	12	15	12	15	y	0.51	24	23	24	23	y	0.0122869505339745	-3.58568582800318	down	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5197	chr14	20753265	20753344	+	20753265	20753358	A3SS	ENSMUST00000071215.5	known	0.05	11	229	11	229	y	0.06	5	84	5	84	y	0.04	11	251	11	251	y	0.07	9	113	9	113	y	0.07	14	178	14	178	y	0.09	26	272	26	272	y	0.08	22	267	22	267	y	0.08	21	239	21	239	y	0.0216793077491661	-3.27326835353989	down	ENSMUSG00000063787.5	Chchd1	chr14	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 1
known_NIR_5219	chr14	21102768	21142435	+	21102768	21103790	3pMXE	ENSMUST00000223558.2	known	0.77	347	102	347	102	y	0.73	178	65	178	65	y	0.77	306	93	306	93	y	0.77	212	64	212	64	y	0.84	247	47	247	47	y	0.83	325	65	325	65	y	0.79	238	64	238	64	y	0.79	306	82	306	82	y	0.0210222895534833	-3.17792961552351	down	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5280	chr14	26174755;26180615	26180565;26181197	-	26174755	26181197	cassetteExon	ENSMUST00000112331.9	known	0.40	4.0	6	4;4	6	y	0.64	3.5	2	3;4	2	n	0.65	7.5	4	10;5	4	y	0.38	2.5	4	1;4	4	n	0.83	5.0	1	6;4	1	n	0.62	8.0	5	8;8	5	y	0.88	7.0	1	8;6	1	n	0.69	4.5	2	5;4	2	y	0.0485676722597192	-2.49224537163367	down	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5404	chr14	33990909	33995444	-	33990909;33991493	33991428;33995444	ES	ENSMUST00000228337.2	known	0.62	12	7.5	12	10;5	y	0.65	16	8.5	16	14;3	y	0.76	11	3.5	11	3;4	y	0.62	8	5.0	8	5;5	y	1.00	4	0.0	4	0;0	n	0.77	5	1.5	5	3;0	n	0.80	4	1.0	4	2;0	n	1.00	2	0.0	2	0;0	n	0.0256751907641986	-3.25404732909906	down	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5405	chr14	33990909	34030997	-	33990909;33991493	33991428;34030997	ES	ENSMUST00000111917.3	known	0.40	4	6.0	4	10;2	y	0.38	5	8.0	5	14;2	y	0.67	6	3.0	6	3;3	y	0.62	4	2.5	4	5;0	n	1.00	7	0.0	7	0;0	n	0.84	13	2.5	13	3;2	y	0.67	2	1.0	2	2;0	n	1.00	8	0.0	8	0;0	n	0.0160468794580965	-3.3217013552665	down	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5473	chr14	45567640	45568287	+	45567389	45568287	A5SS	ENSMUST00000022380.9	known	0.01	2	292	2	292	y	0.01	2	138	2	138	y	0.00	0	258	0	258	n	0.01	2	148	2	148	y	0.02	5	224	5	224	y	0.01	3	297	3	297	y	0.03	6	177	6	177	y	0.02	7	313	7	313	y	0.0478566196408534	-2.61116483933547	down	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5497	chr14	47941734	47943220	+	47941734;47941945	47941877;47943220	ES	ENSMUST00000187839.8	known	0.33	6	12.0	6	11;13	y	0.42	4	5.5	4	7;4	y	0.40	12	18.0	12	18;18	y	0.56	12	9.5	12	9;10	y	0.60	14	9.5	14	6;13	y	0.64	16	9.0	16	11;7	y	0.65	12	6.5	12	10;3	y	0.50	14	14.0	14	15;13	y	0.0317284031942714	-2.87523642599414	down	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5542	chr14	52126293	52126985	+	52126293;52126674	52126604;52126985	ES	ENSMUST00000047899.13	known	0.04	1	23.0	1	26;20	n	0.00	0	15.0	0	16;14	n	0.07	1	14.0	1	10;18	n	0.00	0	9.0	0	10;8	n	0.11	2	15.5	2	18;13	y	0.05	2	39.0	2	38;40	y	0.10	2	18.5	2	18;19	y	0.08	3	32.5	3	34;31	y	0.039338179913159	-2.66769412194335	down	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5547	chr14	52149003	52149412	-	52149003	52150780	A5SS	ENSMUST00000004673.15	known	0.05	36	670	36	670	y	0.01	2	183	2	183	y	0.05	32	559	32	559	y	0.02	4	241	4	241	y	0.08	31	372	31	372	y	0.06	39	591	39	591	y	0.08	36	404	36	404	y	0.08	41	500	41	500	y	0.0178851149278323	-3.70970413401187	down	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5651	chr14	55798876	55800349	+	55798899	55800349	A5SS	ENSMUST00000117236.8	known	0.13	79	531	79	531	y	0.14	38	240	38	240	y	0.18	108	497	108	497	y	0.10	34	290	34	290	y	0.17	73	350	73	350	y	0.17	130	635	130	635	y	0.22	107	389	107	389	y	0.20	134	549	134	549	y	0.046571089257177	-2.55288883019029	down	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5694	chr14	56848794	56851142	-	56848794;56849196	56849130;56851142	ES	ENSMUST00000160334.8	known	0.77	68	20.0	68	21;19	y	0.74	28	10.0	28	12;8	y	0.78	48	13.5	48	15;12	y	0.81	59	14.0	59	14;14	y	0.89	29	3.5	29	3;4	y	0.82	30	6.5	30	7;6	y	0.87	29	4.5	29	4;5	y	0.80	37	9.0	37	9;9	y	0.0379802365813541	-2.74562589193457	down	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
known_NIR_5738	chr14	61861931;61862811	61862669;61869886	-	61861931	61869886	cassetteExon	ENSMUST00000183066.8	known	0.08	0.5	6	0;1	6	n	-	-	-	-	-	-	0.33	1.0	2	0;2	2	n	0.11	0.5	4	0;1	4	n	0.38	3.0	5	2;4	5	y	0.50	3.0	3	0;6	3	n	0.60	3.0	2	3;3	2	n	0.33	2.0	4	1;3	4	n	0.0470024635783803	-2.80563216752258	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5739	chr14	61862811	61869886	-	61841255	61869886	A3SS	ENSMUST00000182768.8	known	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.10	2	19	2	19	y	0.17	1	5	1	5	n	0.21	4	15	4	15	y	0.21	6	23	6	23	y	0.23	3	10	3	10	y	0.12	3	23	3	23	y	0.0491236231654402	-2.53752327875902	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5886	chr14	79875614	79879336	-	79875617	79879336	A3SS	ENSMUST00000165835.8	known	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.19	5	22	5	22	y	0.11	4	31	4	31	y	0.09	4	43	4	43	y	0.27	4	11	4	11	y	0.0301656462218483	-3.17045624929367	down	ENSMUSG00000022025.14	Cnmd	chr14	protein_coding	chondromodulin
known_NIR_5905	chr14	8512701	8515107	+	8512303	8515107	A5SS	ENSMUST00000225202.2	known	0.61	23	15	23	15	y	0.36	5	9	5	9	y	0.60	21	14	21	14	y	0.45	15	18	15	18	y	0.86	24	4	24	4	y	0.78	35	10	35	10	y	0.70	28	12	28	12	y	0.72	31	12	31	12	y	0.0148000943967273	-3.68927340475514	down	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_6042	chr15	10326631	10345744	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	known	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.12	2	15	2	15	y	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.28	5	13	5	13	y	0.38	5	8	5	8	y	0.25	5	15	5	15	y	0.0127059170728556	-3.86023424816477	down	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6043	chr15	10326631	10345744	+	10326631	10341860	A3SS&ES	ENSMUST00000145428.8	known	0.00	0	6	0	6	n	-	-	-	-	-	-	0.11	2	17	2	17	y	0.00	0	2	0	2	n	0.11	2	17	2	17	y	0.25	5	15	5	15	y	0.24	5	16	5	16	y	0.20	5	20	5	20	y	0.0238762761574953	-3.36137226879317	down	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6073	chr15	12343237;12343407	12343359;12349454	+	12343237	12349454	cassetteExon	ENSMUST00000059680.7	known	0.02	6.0	253	9;3	253	y	0.01	2.0	151	3;1	151	n	0.02	6.0	248	8;4	248	y	0.02	3.5	202	3;4	202	y	0.03	5.0	149	8;2	149	y	0.03	6.0	210	9;3	210	y	0.03	4.0	152	3;5	152	y	0.02	5.5	246	8;3	246	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
known_NIR_6162	chr15	36791232	36794389	-	36791232	36793723	5pMXE	ENSMUST00000110362.4	known	0.00	0	126	0	126	n	0.02	2	82	2	82	y	0.02	2	129	2	129	y	0.00	0	96	0	96	n	0.03	2	56	2	56	y	0.04	5	127	5	127	y	0.02	1	64	1	64	n	0.03	4	124	4	124	y	0.0337095521893972	-2.82842712474619	down	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6163	chr15	36791232	36794389	-	36791232;36793919	36793723;36794389	ES	ENSMUST00000022894.14	known	0.00	0	70.0	0	126;14	n	0.04	2	45.5	2	82;9	y	0.03	2	71.5	2	129;14	y	0.00	0	52.0	0	96;8	n	0.06	2	31.5	2	56;7	y	0.07	5	67.5	5	127;8	y	0.03	1	36.0	1	64;8	n	0.05	4	70.5	4	124;17	y	0.0411459742270663	-2.6148057867317	down	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6164	chr15	36791232	36794389	-	36793922	36794389	3pMXE	ENSMUST00000227067.2	known	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.00535476679631533	-4.3245192544037	down	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6200	chr15	43141818;43144624	43144415;43145999	-	43141818	43145999	cassetteExon	ENSMUST00000022960.4	known	0.01	1.5	153	1;2	153	n	0.00	0.0	51	0;0	51	n	0.01	2.0	179	2;2	179	y	0.00	0.0	103	0;0	103	n	0.02	3.0	139	2;4	139	y	0.01	2.5	192	0;5	192	n	0.02	3.0	122	4;2	122	y	0.01	2.0	154	1;3	154	n	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000022336.4	Eif3e	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit E
known_NIR_6301	chr15	7170064	7183868	+	7159307	7183868	A5SS	ENSMUST00000067190.12	known	0.19	22	93	22	93	y	0.14	4	25	4	25	y	0.22	15	54	15	54	y	0.03	1	31	1	31	n	0.66	106	54	106	54	y	0.60	147	100	147	100	y	0.59	91	64	91	64	y	0.51	96	94	96	94	y	0.000214221831612089	-8.57727575881319	down	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
known_NIR_6351	chr15	75773104	75781309	-	75773104	75781094	5pMXE	ENSMUST00000154584.9	known	0.01	4	283	4	283	y	0.00	0	143	0	143	n	0.02	5	314	5	314	y	0.02	3	141	3	141	y	0.03	6	202	6	202	y	0.03	7	245	7	245	y	0.02	5	229	5	229	y	0.03	7	269	7	269	y	0.0435576347221575	-2.77746029931765	down	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6434	chr15	76468834	76471958	+	76460694	76471958	A5SS	ENSMUST00000162503.8	known	0.02	1	64	1	64	n	0.00	0	19	0	19	n	0.02	1	54	1	54	n	0.00	0	17	0	17	n	0.04	2	55	2	55	y	0.12	11	78	11	78	y	0.12	10	73	10	73	y	0.10	9	79	9	79	y	0.0163565902955607	-4.29497479743925	down	ENSMUSG00000022550.19	Adck5	chr15	protein_coding	aarF domain containing kinase 5
known_NIR_6492	chr15	78319910	78322687	+	78319910	78321101	3pMXE	ENSMUST00000160916.8	known	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.80	4	1	4	1	n	0.17	1	5	1	5	n	0.67	2	1	2	1	n	0.29	2	5	2	5	n	0.0488571966971239	-3.21265335672373	down	ENSMUSG00000033287.17	Kctd17	chr15	protein_coding	potassium channel tetramerisation domain containing 17
known_NIR_6530	chr15	79555209	79556098	+	79555209;79555492	79555374;79556098	ES	ENSMUST00000023062.5	known	0.02	5	306.0	5	296;316	y	0.01	1	157.0	1	148;166	n	0.01	4	301.5	4	292;311	y	0.02	4	158.5	4	143;174	y	0.03	7	212.5	7	196;229	y	0.02	7	306.0	7	289;323	y	0.03	7	248.0	7	229;267	y	0.02	5	254.5	5	234;275	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000022427.5	Tomm22	chr15	protein_coding	translocase of outer mitochondrial membrane 22
known_NIR_6531	chr15	79555209	79556098	+	79555492	79556098	5pMXE	ENSMUST00000127292.2	known	0.02	5	316	5	316	y	0.01	1	166	1	166	n	0.01	4	311	4	311	y	0.02	4	174	4	174	y	0.03	7	229	7	229	y	0.02	7	323	7	323	y	0.03	7	267	7	267	y	0.02	5	275	5	275	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000022427.5	Tomm22	chr15	protein_coding	translocase of outer mitochondrial membrane 22
known_NIR_6603	chr15	82287297;82287539	82287398;82287920	-	82287297	82287920	cassetteExon	ENSMUST00000230198.2	known	0.95	2767.5	131	2878;2657	131	y	0.93	796.5	64	763;830	64	y	0.96	2734.0	104	2667;2801	104	y	0.94	906.5	60	902;911	60	y	0.97	2066.0	60	2017;2115	60	y	0.96	3310.0	133	3310;3310	133	y	0.97	3127.5	108	3210;3045	108	y	0.96	2408.0	91	2366;2450	91	y	0.0453983125632162	-2.8284271247462	down	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6708	chr15	89010640	89010844	-	89010640	89010833	A5SS	ENSMUST00000129398.8	known	0.82	18	4	18	4	y	0.75	9	3	9	3	y	0.78	14	4	14	4	y	0.85	17	3	17	3	y	1.00	10	0	10	0	n	0.94	15	1	15	1	n	0.91	20	2	20	2	y	0.94	16	1	16	1	n	0.00239681040157966	-5.090496180606	down	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
known_NIR_6757	chr15	93339593;93350054	93349998;93353332	+	93339593	93353332	cassetteExon	ENSMUST00000109256.11	known	0.69	17.5	8	17;18	8	y	0.70	11.5	5	9;14	5	y	0.69	18.0	8	20;16	8	y	0.45	9.0	11	9;9	11	y	0.86	19.0	3	21;17	3	y	0.90	28.0	3	32;24	3	y	0.87	13.0	2	15;11	2	y	0.76	18.5	6	21;16	6	y	0.0298829999698191	-3.1599997721291	down	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
known_NIR_6764	chr15	96917742	96929015	-	96917742	96918184	5pMXE	ENSMUST00000166223.2	known	0.86	874	142	874	142	y	0.86	263	44	263	44	y	0.86	638	106	638	106	y	0.86	458	77	458	77	y	0.94	811	52	811	52	y	0.93	1188	94	1188	94	y	0.93	635	47	635	47	y	0.95	1510	80	1510	80	y	0.000512695408574066	-16.18922200388	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6765	chr15	96917742	96929015	-	96917742	96953736	A5SS	ENSMUST00000023101.10	known	0.98	874	14	874	14	y	0.97	263	9	263	9	y	0.98	638	10	638	10	y	0.98	458	8	458	8	y	1.00	811	2	811	2	y	0.99	1188	7	1188	7	y	1.00	635	2	635	2	y	1.00	1510	5	1510	5	y	0.00131073191803929	-5.65685424949238	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6766	chr15	96917742	96947831	-	96917742	96918184	5pMXE	ENSMUST00000166223.2	known	0.21	37	142	37	142	y	0.20	11	44	11	44	y	0.34	54	106	54	106	y	0.13	12	77	12	77	y	0.70	121	52	121	52	y	0.59	133	94	133	94	y	0.68	102	47	102	47	y	0.78	285	80	285	80	y	0.000221565299416568	-7.97129161466678	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6767	chr15	96917742	96947831	-	96917742	96929015	5pMXE	ENSMUST00000230086.2	known	0.04	37	874	37	874	y	0.04	11	263	11	263	y	0.08	54	638	54	638	y	0.03	12	458	12	458	y	0.13	121	811	121	811	y	0.10	133	1188	133	1188	y	0.14	102	635	102	635	y	0.16	285	1510	285	1510	y	0.00234499386603228	-5.08729761414893	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6768	chr15	96917742	96947831	-	96917742	96953736	A5SS	ENSMUST00000023101.10	known	0.73	37	14	37	14	y	0.55	11	9	11	9	y	0.84	54	10	54	10	y	0.60	12	8	12	8	y	0.98	121	2	121	2	y	0.95	133	7	133	7	y	0.98	102	2	102	2	y	0.98	285	5	285	5	y	0.0201102087174405	-4.44019306453132	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6810	chr15	99290921;99298088	99297942;99299461	+	99290921;99291611	99291576;99299461	MXE	ENSMUST00000160635.8	known	0.02	1.0	45.0	1;1	35;55	n	0.00	0.0	16.0	0;0	12;20	n	0.00	0.0	25.5	0;0	19;32	n	0.02	0.5	20.5	1;0	16;25	n	0.03	1.0	31.0	0;2	22;40	n	0.04	2.0	49.0	2;2	38;60	y	0.06	1.5	24.5	2;1	17;32	n	0.04	1.5	39.5	1;2	30;49	n	0.00902874004308701	-3.80601028449928	down	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6821	chr15	99298088	99299461	+	99291611	99299461	A5SS	ENSMUST00000162624.8	known	0.02	1	55	1	55	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.05	2	40	2	40	y	0.03	2	60	2	60	y	0.03	1	32	1	32	n	0.04	2	49	2	49	y	0.00335990948770375	-4.695048270345	down	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6841	chr16	10959635	10963106	-	10959635	10963044	A5SS	ENSMUST00000037633.16	known	0.19	20	87	20	87	y	0.23	15	50	15	50	y	0.16	16	86	16	86	y	0.20	11	43	11	43	y	0.31	22	49	22	49	y	0.27	17	46	17	46	y	0.31	19	43	19	43	y	0.30	21	48	21	48	y	0.00171474594635543	-5.93849595989879	down	ENSMUSG00000037965.16	Zc3h7a	chr16	protein_coding	zinc finger CCCH type containing 7 A
known_NIR_6875	chr16	14008096	14010206	+	14008096	14009582	A3SS	ENSMUST00000023359.13	known	0.05	2	35	2	35	y	0.05	1	20	1	20	n	0.04	1	27	1	27	n	0.00	0	14	0	14	n	0.09	2	21	2	21	y	0.10	4	38	4	38	y	0.08	2	24	2	24	y	0.12	3	23	3	23	y	0.00658940467503046	-4.26660092991431	down	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6940	chr16	17449921	17456360	+	17449921;17453432	17453346;17456360	ES	ENSMUST00000006053.13	known	0.44	7	9.0	7	5;13	y	0.60	6	4.0	6	7;1	n	0.48	6	6.5	6	8;5	y	0.40	4	6.0	4	4;8	y	0.67	6	3.0	6	5;1	n	0.67	9	4.5	9	4;5	y	0.55	6	5.0	6	6;4	y	0.62	12	7.5	12	10;5	y	0.0342550773897953	-2.85298383409359	down	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_7045	chr16	20528474	20528630	-	20528430	20528630	A3SS	ENSMUST00000007207.15	known	0.02	2	86	2	86	y	0.00	0	8	0	8	n	0.03	3	83	3	83	y	0.00	0	22	0	22	n	0.07	5	65	5	65	y	0.08	9	105	9	105	y	0.05	4	72	4	72	y	0.02	2	104	2	104	y	0.0404794144356916	-2.79478278419107	down	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
known_NIR_7134	chr16	23346356;23373683	23373448;23378522	+	23346356;23362621	23353330;23378522	MXE	ENSMUST00000211460.2	known	0.40	17.0	25.5	3;31	51;0	n	0.28	4.0	10.5	0;8	21;0	n	0.41	15.5	22.5	4;27	45;0	n	0.38	10.5	17.0	0;21	34;0	n	0.52	17.5	16.0	3;32	32;0	n	0.43	16.5	22.0	2;31	44;0	n	0.54	19.0	16.0	8;30	31;1	n	0.44	14.0	17.5	4;24	35;0	n	0.0304983052131477	-2.82044096163084	down	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7214	chr16	32877275	32877506	+	32876987	32877506	A5SS	ENSMUST00000115078.8	known	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.40	6	9	6	9	y	0.41	11	16	11	16	y	0.29	5	12	5	12	y	0.57	12	9	12	9	y	0.0107204060003518	-3.72474497238084	down	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7264	chr16	3717832	3729315	+	3717832	3718507	3pMXE	ENSMUST00000151988.8	known	0.02	4	196	4	196	y	0.00	0	57	0	57	n	0.01	3	198	3	198	y	0.01	1	99	1	99	n	0.04	5	126	5	126	y	0.03	6	202	6	202	y	0.02	4	178	4	178	y	0.04	6	147	6	147	y	0.0121941868183737	-3.57623736407562	down	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7315	chr16	44565856	44566563	-	44565856	44566362	A5SS	ENSMUST00000162512.8	known	0.09	3	31	3	31	y	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.11	3	24	3	24	y	0.24	4	13	4	13	y	0.17	6	29	6	29	y	0.017925429948942	-3.36776741107931	down	ENSMUSG00000022668.11	Gtpbp8	chr16	protein_coding	GTP-binding protein 8 (putative)
known_NIR_7331	chr16	45646458	45680685	-	45646458	45664571	5pMXE	ENSMUST00000036355.13	known	0.50	17	17	17	17	y	0.56	5	4	5	4	n	0.42	5	7	5	7	y	0.45	5	6	5	6	y	0.73	11	4	11	4	y	0.79	19	5	19	5	y	0.83	5	1	5	1	n	1.00	17	0	17	0	n	0.00384310488370997	-5.41632407083893	down	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7379	chr16	49688475	49704528	+	49688475;49689443	49689381;49704528	ES	ENSMUST00000229640.2	known	0.57	174	130.5	174	146;115	y	0.61	102	66.0	102	66;66	y	0.63	165	97.0	165	108;86	y	0.61	84	53.5	84	54;53	y	0.75	101	33.5	101	30;37	y	0.75	183	62.0	183	57;67	y	0.65	110	59.0	110	52;66	y	0.70	200	84.0	200	86;82	y	0.012825572249133	-3.97535140628081	down	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7382	chr16	49727175;49728441	49728417;49731232	+	49727175	49731232	cassetteExon	ENSMUST00000229640.2	known	0.38	115.0	191	124;106	191	y	0.35	66.5	122	76;57	122	y	0.36	117.5	209	127;108	209	y	0.32	51.5	108	54;49	108	y	0.46	86.5	102	92;81	102	y	0.39	99.0	157	99;99	157	y	0.44	100.0	126	103;97	126	y	0.42	118.0	164	126;110	164	y	0.00895301708043422	-3.85164443259822	down	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7390	chr16	5013835	5015419	-	5013922	5015419	A3SS	ENSMUST00000147567.2	known	0.01	1	71	1	71	n	0.00	0	27	0	27	n	0.04	2	54	2	54	y	0.00	0	16	0	16	n	0.08	3	36	3	36	y	0.06	4	65	4	65	y	0.11	7	55	7	55	y	0.04	2	47	2	47	y	0.0189249264221778	-3.39411254969543	down	ENSMUSG00000023143.11	Nagpa	chr16	protein_coding	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
known_NIR_7400	chr16	55844801	55849966	-	55838890	55849966	A3SS	ENSMUST00000140227.2	known	0.98	132	3	132	3	y	0.98	49	1	49	1	n	0.98	127	3	127	3	y	0.96	51	2	51	2	y	1.00	82	0	82	0	n	1.00	89	0	89	0	n	0.99	78	1	78	1	n	0.98	103	2	103	2	y	0.0448673860955743	-2.52810291480115	down	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7405	chr16	55845000	55849966	-	55838890	55849966	A3SS	ENSMUST00000140227.2	known	0.75	9	3	9	3	y	0.67	2	1	2	1	n	0.62	5	3	5	3	n	0.75	6	2	6	2	n	-	-	-	-	-	-	1.00	12	0	12	0	n	0.94	16	1	16	1	n	0.80	8	2	8	2	y	0.0457547433580563	-3.20535717142661	down	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7473	chr16	86598325	86600861	-	86567285	86600861	A3SS	ENSMUST00000232333.2	known	0.05	2	41	2	41	y	0.00	0	11	0	11	n	0.00	0	48	0	48	n	0.00	0	21	0	21	n	0.13	4	27	4	27	y	0.04	2	49	2	49	y	0.06	3	44	3	44	y	0.06	4	63	4	63	y	0.0494728062765369	-2.56815495002312	down	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
known_NIR_7558	chr16	94171051	94172603	-	94171051	94171225	5pMXE	ENSMUST00000113910.8	known	0.20	7	28	7	28	y	0.08	1	12	1	12	n	0.29	6	15	6	15	y	0.06	1	16	1	16	n	0.50	9	9	9	9	y	0.69	29	13	29	13	y	0.43	6	8	6	8	y	0.47	9	10	9	10	y	0.00363931479618341	-4.62463955026764	down	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7559	chr16	94171051	94172603	-	94171051	94171464	5pMXE	ENSMUST00000113906.9	known	0.15	7	40	7	40	y	0.02	1	48	1	48	n	0.10	6	56	6	56	y	0.03	1	34	1	34	n	0.26	9	25	9	25	y	0.50	29	29	29	29	y	0.18	6	28	6	28	y	0.27	9	24	9	24	y	0.0374490495602119	-3.0182794769703	down	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7560	chr16	94171051	94172603	-	94171051	94171600	5pMXE	ENSMUST00000113914.8	known	0.37	7	12	7	12	y	0.12	1	7	1	7	n	0.35	6	11	6	11	y	0.07	1	14	1	14	n	0.64	9	5	9	5	y	0.58	29	21	29	21	y	0.55	6	5	6	5	y	0.50	9	9	9	9	y	0.0159312634609117	-4.11429152502568	down	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7573	chr16	96174347	96187686	+	96174347;96179584	96179285;96187686	ES	ENSMUST00000113794.8	known	0.89	117	15.0	117	21;9	y	0.90	83	9.5	83	9;10	y	0.93	99	7.5	99	5;10	y	0.89	65	8.0	65	6;10	y	0.93	62	4.5	62	6;3	y	0.95	100	5.0	100	6;4	y	0.94	86	5.5	86	6;5	y	0.97	90	2.5	90	5;0	n	0.0125824220761204	-3.53009043248731	down	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
known_NIR_7810	chr17	26003699	26004402	-	26003699;26004168	26003978;26004402	ES	ENSMUST00000140738.8	known	0.00	0	21.0	0	20;22	n	0.00	0	11.0	0	12;10	n	0.12	3	21.0	3	24;18	y	0.09	1	10.0	1	7;13	n	0.11	2	16.0	2	16;16	y	0.19	5	22.0	5	29;15	y	0.33	9	18.0	9	25;11	y	0.17	4	20.0	4	20;20	y	0.0441300732284115	-2.63944017352539	down	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7826	chr17	26083013	26083177	-	26083013	26083225	A5SS	ENSMUST00000237876.2	known	0.00	0	160	0	160	n	0.00	0	42	0	42	n	0.01	2	194	2	194	y	0.00	0	73	0	73	n	0.01	1	128	1	128	n	0.01	2	293	2	293	y	0.02	5	239	5	239	y	0.01	2	158	2	158	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7897	chr17	27237144;27241314	27241225;27244311	+	27237144	27244311	cassetteExon	ENSMUST00000122106.9	known	0.76	53.0	17	74;32	17	y	0.89	16.5	2	25;8	2	y	0.84	47.5	9	67;28	9	y	0.76	18.5	6	28;9	6	y	0.92	46.5	4	56;37	4	y	0.95	63.0	3	92;34	3	y	0.98	43.5	1	66;21	1	n	0.94	51.5	3	71;32	3	y	0.0179726232910912	-3.93139038874195	down	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7974	chr17	29171731	29180388	+	29171543	29180388	A5SS	ENSMUST00000118762.9	known	0.07	2	28	2	28	y	0.00	0	16	0	16	n	0.08	2	22	2	22	y	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.20	9	35	9	35	y	0.19	5	22	5	22	y	0.11	2	17	2	17	y	0.00637618343742762	-4.1367470379923	down	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7975	chr17	29171731	29180388	+	29171731;29177031	29176853;29180388	ES	ENSMUST00000233064.2	known	0.15	2	11.0	2	0;22	n	0.00	0	6.0	0	1;11	n	0.24	2	6.5	2	0;13	n	0.12	1	7.5	1	2;13	n	0.50	2	2.0	2	0;4	n	0.62	9	5.5	9	1;10	n	0.71	5	2.0	5	0;4	n	0.25	2	6.0	2	2;10	y	0.0208532033424305	-3.52386609305938	down	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7976	chr17	29171731	29180388	+	29177031	29180388	A5SS&ES	ENSMUST00000233197.2	known	0.08	2	22	2	22	y	0.00	0	11	0	11	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.33	2	4	2	4	n	0.47	9	10	9	10	y	0.56	5	4	5	4	n	0.17	2	10	2	10	y	0.0297077440311688	-3.49978535308065	down	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_8076	chr17	31867868;31870686	31870620;31873953	-	31867868;31871542	31871476;31873953	MXE	ENSMUST00000166526.9	known	0.92	286.5	25.5	314;259	14;37	y	0.91	116.0	11.5	126;106	5;18	y	0.91	279.0	27.5	314;244	17;38	y	0.92	134.5	12.0	152;117	4;20	y	0.94	197.0	11.5	220;174	9;14	y	0.94	274.5	17.5	315;234	17;18	y	0.93	254.0	18.5	271;237	18;19	y	0.94	269.5	16.5	314;225	16;17	y	0.00114013066076554	-5.89188303637181	down	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8077	chr17	31867868;31870782	31870620;31873953	-	31867868;31871542	31871476;31873953	MXE	ENSMUST00000166526.9	known	0.86	157.0	25.5	314;0	14;37	n	0.85	63.0	11.5	126;0	5;18	n	0.85	159.0	27.5	314;4	17;38	y	0.86	76.0	12.0	152;0	4;20	n	0.91	110.0	11.5	220;0	9;14	n	0.90	157.5	17.5	315;0	17;18	n	0.88	135.5	18.5	271;0	18;19	n	0.90	157.0	16.5	314;0	16;17	n	0.00301328367096412	-6.13967850737422	down	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8078	chr17	31870686	31873953	-	31871542	31873953	3pMXE	ENSMUST00000235600.2	known	0.88	259	37	259	37	y	0.85	106	18	106	18	y	0.87	244	38	244	38	y	0.85	117	20	117	20	y	0.93	174	14	174	14	y	0.93	234	18	234	18	y	0.93	237	19	237	19	y	0.93	225	17	225	17	y	0.00289581216186415	-8.99999999999999	down	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8106	chr17	32555712	32557431	-	32555712;32557328	32557245;32557431	ES	ENSMUST00000236503.2	known	0.07	4	51.0	4	76;26	y	0.05	1	17.5	1	20;15	n	0.11	5	40.5	5	57;24	y	0.00	0	27.0	0	43;11	n	0.13	5	33.0	5	56;10	y	0.15	6	33.0	6	55;11	y	0.08	3	33.0	3	46;20	y	0.19	8	34.0	8	48;20	y	0.0482108855557341	-2.47376674574435	down	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8314	chr17	35340774	35342029	+	35341436	35342029	A5SS&ES	ENSMUST00000173380.2	known	0.78	14	4	14	4	y	0.71	5	2	5	2	n	0.83	15	3	15	3	y	0.83	5	1	5	1	n	0.83	10	2	10	2	y	1.00	18	0	18	0	n	0.89	24	3	24	3	y	0.93	13	1	13	1	n	0.0354194646407563	-2.74135551509107	down	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8323	chr17	35361360	35361703	+	35361360	35361474	3pMXE	ENSMUST00000173535.8	known	0.51	59	57	59	57	y	0.43	30	40	30	40	y	0.61	72	47	72	47	y	0.47	36	40	36	40	y	0.62	51	31	51	31	y	0.68	85	40	85	40	y	0.76	57	18	57	18	y	0.67	67	33	67	33	y	0.0118640824856699	-3.67624064885733	down	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8358	chr17	36212946	36215182	-	36212946;36215068	36215000;36215182	ES	ENSMUST00000061052.12	known	0.33	13	26.0	13	22;30	y	0.22	2	7.0	2	6;8	y	0.40	13	19.5	13	17;22	y	0.37	8	13.5	8	12;15	y	0.57	19	14.5	19	11;18	y	0.42	19	26.5	19	29;24	y	0.50	12	12.0	12	10;14	y	0.61	24	15.5	24	12;19	y	0.0145933828972153	-3.39880842857864	down	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8359	chr17	36212946	36215182	-	36215068	36215182	3pMXE	ENSMUST00000140990.8	known	0.30	13	30	13	30	y	0.20	2	8	2	8	y	0.37	13	22	13	22	y	0.35	8	15	8	15	y	0.51	19	18	19	18	y	0.44	19	24	19	24	y	0.46	12	14	12	14	y	0.56	24	19	24	19	y	0.00854086159718033	-4.03008417291854	down	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8396	chr17	37269687	37275249	+	37269594	37275249	A5SS	ENSMUST00000040177.7	known	0.06	5	76	5	76	y	0.00	0	34	0	34	n	0.04	3	68	3	68	y	0.00	0	41	0	41	n	0.05	2	42	2	42	y	0.09	5	52	5	52	y	0.06	3	51	3	51	y	0.10	7	62	7	62	y	0.0419797654481047	-2.61116483933547	down	ENSMUSG00000036214.15	Polr1has	chr17	protein_coding	RNA polymerase I subunit H, antisense
known_NIR_8453	chr17	46329805;46332048	46331917;46334991	-	46329805	46334991	cassetteExon	ENSMUST00000024747.14	known	0.84	339.0	64	508;170	64	y	0.88	91.5	12	128;55	12	y	0.85	221.5	40	313;130	40	y	0.80	117.5	29	171;64	29	y	0.90	234.0	25	344;124	25	y	0.89	294.0	38	420;168	38	y	0.89	242.5	30	353;132	30	y	0.90	311.5	35	469;154	35	y	0.0480347340749334	-3.13049516849971	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8454	chr17	46329805;46333274	46333203;46334991	-	46329805	46334991	cassetteExon	ENSMUST00000024747.14	known	0.39	41.0	64	1;81	64	n	0.55	14.5	12	0;29	12	n	0.43	30.5	40	1;60	40	n	0.34	15.0	29	0;30	29	n	0.62	40.5	25	1;80	25	n	0.55	47.0	38	1;93	38	n	0.61	46.0	30	5;87	30	y	0.61	54.0	35	4;104	35	y	0.0259012296030664	-3.57400065234793	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8458	chr17	46332048;46333274	46333221;46334991	-	46332048	46334991	cassetteExon	ENSMUST00000071648.12	known	0.19	40.5	170	0;81	170	n	0.21	14.5	55	0;29	55	n	0.19	30.0	130	0;60	130	n	0.19	15.0	64	0;30	64	n	0.24	40.0	124	0;80	124	n	0.23	49.5	168	6;93	168	y	0.25	43.5	132	0;87	132	n	0.25	52.0	154	0;104	154	n	0.00047553216038563	-6.86199362588884	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8533	chr17	49735592	49742123	+	49740324	49742123	5pMXE	ENSMUST00000174268.2	known	0.00	1	229	1	229	n	0.00	0	137	0	137	n	0.01	2	238	2	238	y	0.00	0	134	0	134	n	0.01	2	199	2	199	y	0.01	2	222	2	222	y	0.01	1	176	1	176	n	0.02	4	209	4	209	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
known_NIR_8569	chr17	56906220	56906623	+	56904815	56906623	A5SS	ENSMUST00000182951.8	known	0.87	59	9	59	9	y	0.77	27	8	27	8	y	0.86	61	10	61	10	y	0.84	26	5	26	5	y	0.84	31	6	31	6	y	0.96	71	3	71	3	y	0.95	40	2	40	2	y	0.96	47	2	47	2	y	0.0488328676543417	-2.50404253311193	down	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8618	chr17	66161194	66165968	-	66161194;66164788	66164657;66165968	ES	ENSMUST00000024905.11	known	0.00	0	66.0	0	63;69	n	0.03	1	39.0	1	40;38	n	0.00	0	60.0	0	64;56	n	0.03	1	31.5	1	24;39	n	0.06	2	32.0	2	31;33	y	0.03	2	55.5	2	58;53	y	0.05	2	41.0	2	43;39	y	0.05	2	39.5	2	46;33	y	0.0257087970199699	-3.03614588222994	down	ENSMUSG00000024096.18	Ralbp1	chr17	protein_coding	ralA binding protein 1
known_NIR_8656	chr17	7251590	7256121	+	7252512	7256121	A5SS	ENSMUST00000232106.2	known	0.18	6	27	6	27	y	0.14	3	19	3	19	y	0.18	7	32	7	32	y	0.00	0	17	0	17	n	0.45	14	17	14	17	y	0.40	20	30	20	30	y	0.28	11	29	11	29	y	0.27	7	19	7	19	y	0.0107903068483262	-3.64598637273879	down	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8786	chr17	87565517;87566309	87566178;87573263	-	87565517;87571793	87571569;87573263	MXE	ENSMUST00000144236.9	known	0.93	184.0	14.0	260;108	17;11	y	0.93	156.0	11.5	233;79	15;8	y	0.93	138.5	10.5	209;68	18;3	y	0.90	142.0	15.5	207;77	23;8	y	0.95	83.5	4.0	123;44	7;1	n	0.94	126.0	8.0	167;85	6;10	y	0.96	98.0	4.0	145;51	8;0	n	0.95	107.5	5.5	151;64	7;4	y	0.0261377052147613	-3.22047024073014	down	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8854	chr18	14769675	14773314	-	14769675;14770541	14770449;14773314	ES	ENSMUST00000040964.13	known	0.86	41	6.5	41	7;6	y	0.81	24	5.5	24	5;6	y	0.76	27	8.5	27	8;9	y	0.78	23	6.5	23	4;9	y	0.88	43	6.0	43	8;4	y	0.85	37	6.5	37	8;5	y	0.88	38	5.0	38	5;5	y	0.95	42	2.0	42	0;4	n	0.0280689045762029	-2.88022760575412	down	ENSMUSG00000037013.18	Ss18	chr18	protein_coding	SS18, nBAF chromatin remodeling complex subunit
known_NIR_8883	chr18	31813724	31815063	+	31813724	31815060	A3SS	ENSMUST00000235017.2	known	0.50	18	18	18	18	y	0.48	10	11	10	11	y	0.39	7	11	7	11	y	0.42	5	7	5	7	y	0.59	10	7	10	7	y	0.57	12	9	12	9	y	0.64	14	8	14	8	y	0.70	14	6	14	6	y	0.00389312570012769	-4.58621627205036	down	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
known_NIR_8907	chr18	3273578	3280949	-	3273578	3295040	A5SS	ENSMUST00000154470.8	known	0.87	41	6	41	6	y	0.83	15	3	15	3	y	0.78	38	11	38	11	y	0.82	23	5	23	5	y	0.86	32	5	32	5	y	0.93	42	3	42	3	y	1.00	25	0	25	0	n	0.92	58	5	58	5	y	0.0290611599781092	-3.00357568660885	down	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8930	chr18	3276729	3295040	-	3276729;3288092	3287904;3295040	ES	ENSMUST00000150235.8	known	0.40	2	3.0	2	2;4	n	0.00	0	4.5	0	0;9	n	0.18	1	4.5	1	4;5	n	0.25	1	3.0	1	0;6	n	0.57	2	1.5	2	0;3	n	0.40	2	3.0	2	5;1	n	0.32	3	6.5	3	2;11	y	0.67	5	2.5	5	1;4	n	0.049310650473281	-2.45826498363543	down	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_9149	chr18	50055782;50059048	50058986;50064978	+	50055782	50064978	cassetteExon	ENSMUST00000180611.8	known	0.04	1.0	27	1;1	27	n	0.00	0.0	8	0;0	8	n	0.00	0.0	16	0;0	16	n	0.00	0.0	19	0;0	19	n	0.10	1.5	13	3;0	13	n	0.12	3.0	21	3;3	21	y	0.07	1.0	14	1;1	14	n	0.09	1.5	15	1;2	15	n	0.00106970194842277	-5.88897274573418	down	ENSMUSG00000037416.14	Dmxl1	chr18	protein_coding	Dmx-like 1
known_NIR_9159	chr18	54081226	54086317	+	54081226	54081717	3pMXE	ENSMUST00000236399.2	known	0.83	122	25	122	25	y	0.82	69	15	69	15	y	0.80	113	28	113	28	y	0.85	78	14	78	14	y	0.92	87	8	87	8	y	0.94	109	7	109	7	y	0.89	104	13	104	13	y	0.86	117	19	117	19	y	0.0131007548478906	-3.80623661717577	down	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
known_NIR_9160	chr18	54081226	54086317	+	54081226;54081740	54081717;54086317	ES	ENSMUST00000069597.8	known	0.82	122	26.0	122	25;27	y	0.83	69	14.0	69	15;13	y	0.80	113	27.5	113	28;27	y	0.85	78	14.0	78	14;14	y	0.92	87	8.0	87	8;8	y	0.93	109	8.5	109	7;10	y	0.90	104	11.0	104	13;9	y	0.87	117	17.5	117	19;16	y	0.0036360470953868	-4.75270820628804	down	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
known_NIR_9162	chr18	56533647	56602605	+	56565429	56602605	5pMXE	ENSMUST00000070166.6	known	0.46	48	56	48	56	y	0.22	12	42	12	42	y	0.51	42	40	42	40	y	0.46	27	32	27	32	y	0.75	39	13	39	13	y	0.58	62	44	62	44	y	0.55	39	32	39	32	y	0.70	55	24	55	24	y	0.0311335648121338	-2.87690024573732	down	ENSMUSG00000001700.11	Gramd3	chr18	protein_coding	GRAM domain containing 3
known_NIR_9173	chr18	6052923;6056993	6056979;6057517	-	6052923	6057517	cassetteExon	ENSMUST00000182066.8	known	0.20	5.0	20	5;5	20	y	0.26	2.5	7	2;3	7	y	0.28	5.5	14	3;8	14	y	0.21	4.0	15	5;3	15	y	0.33	5.0	10	6;4	10	y	0.30	12.0	28	14;10	28	y	0.30	6.0	14	6;6	14	y	0.41	12.0	17	10;14	17	y	0.0261025511339401	-3.01190480867851	down	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9231	chr18	6489330	6490463	-	6462991	6490463	A3SS	ENSMUST00000028100.13	known	0.15	3	17	3	17	y	0.33	5	10	5	10	y	0.24	4	13	4	13	y	0.15	3	17	3	17	y	0.64	9	5	9	5	y	0.50	11	11	11	11	y	0.50	12	12	12	12	y	0.38	6	10	6	10	y	0.00622510767360303	-4.20200854764075	down	ENSMUSG00000024240.14	Epc1	chr18	protein_coding	enhancer of polycomb homolog 1
known_NIR_9232	chr18	65130492	65207795	+	65157060	65207795	5pMXE	ENSMUST00000080418.7	known	0.02	1	42	1	42	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.06	2	29	2	29	y	0.11	2	16	2	16	y	0.17	5	24	5	24	y	0.19	4	17	4	17	y	0.09	3	30	3	30	y	0.00788519053339231	-4.33389071108769	down	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9306	chr18	80258791	80261919	+	80250558	80261919	A5SS	ENSMUST00000145963.9	known	0.05	4	79	4	79	y	0.00	0	41	0	41	n	0.04	4	86	4	86	y	0.00	0	42	0	42	n	0.08	6	66	6	66	y	0.11	8	68	8	68	y	0.09	9	88	9	88	y	0.06	4	65	4	65	y	0.0107316385767948	-3.72677996249965	down	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
known_NIR_9313	chr18	80299618	80299997	+	80299533	80299997	A5SS	ENSMUST00000129043.8	known	0.80	90	23	90	23	y	0.75	12	4	12	4	y	0.81	61	14	61	14	y	0.77	37	11	37	11	y	0.86	64	10	64	10	y	0.83	100	21	100	21	y	0.90	84	9	84	9	y	0.86	99	16	99	16	y	0.00697643678949298	-4.02099751960028	down	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9458	chr19	26729441;26737331	26737278;26748338	+	26729441	26748338	cassetteExon	ENSMUST00000176769.9	known	0.44	58.0	73	58;58	73	y	0.44	21.5	27	23;20	27	y	0.49	63.0	65	69;57	65	y	0.53	34.5	30	43;26	30	y	0.59	63.0	44	53;73	44	y	0.57	79.5	59	83;76	59	y	0.62	75.5	47	79;72	47	y	0.59	83.0	58	87;79	58	y	0.00690148161085446	-4.873672965233	down	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9492	chr19	32597586	32611286	+	32573275	32611286	A5SS	ENSMUST00000235594.2	known	0.54	36	31	36	31	y	0.05	1	21	1	21	n	0.46	36	43	36	43	y	0.14	3	18	3	18	y	0.79	134	36	134	36	y	0.61	110	69	110	69	y	0.66	87	45	87	45	y	0.80	165	42	165	42	y	0.0323497310915962	-3.24879770291169	down	ENSMUSG00000024899.8	Papss2	chr19	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 2
known_NIR_9530	chr19	37103788	37116531	-	37103788	37116462	A5SS	ENSMUST00000079754.11	known	0.60	9	6	9	6	y	0.50	2	2	2	2	n	0.67	8	4	8	4	y	0.40	4	6	4	6	y	0.78	7	2	7	2	n	0.80	12	3	12	3	y	1.00	11	0	11	0	n	0.67	8	4	8	4	y	0.0252534955527819	-2.98240902617162	down	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
known_NIR_9552	chr19	3832852	3836389	+	3818340	3836389	A5SS	ENSMUST00000052699.13	known	0.14	2	12	2	12	y	0.20	1	4	1	4	n	0.38	5	8	5	8	y	0.14	1	6	1	6	n	0.50	3	3	3	3	n	0.44	7	9	7	9	y	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.0357906751382769	-2.76001742028327	down	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9662	chr19	4198728	4199341	+	4198721	4199341	A5SS	ENSMUST00000123874.8	known	0.69	27	12	27	12	y	0.69	11	5	11	5	y	0.65	26	14	26	14	y	0.64	7	4	7	4	y	0.76	22	7	22	7	y	0.72	44	17	44	17	y	0.90	28	3	28	3	y	0.87	39	6	39	6	y	0.0382534888749498	-3.2189122858353	down	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9731	chr19	45352325;45395025	45394984;45411572	+	45352325	45411572	cassetteExon	ENSMUST00000065601.13	known	0.25	4.0	12	2;6	12	y	0.20	2.5	10	1;4	10	n	0.17	3.0	15	1;5	15	n	0.36	5.0	9	4;6	9	y	0.40	2.0	3	1;3	3	n	0.43	6.0	8	8;4	8	y	0.53	4.5	4	3;6	4	y	0.31	4.0	9	4;4	9	y	0.0314297822263659	-2.79908691326257	down	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
known_NIR_9755	chr19	46320079	46320196	-	46320112	46320196	A3SS	ENSMUST00000235485.2	known	0.10	5	46	5	46	y	0.19	4	17	4	17	y	0.09	5	53	5	53	y	0.11	4	31	4	31	y	0.18	4	18	4	18	y	0.21	12	46	12	46	y	0.21	8	30	8	30	y	0.23	15	50	15	50	y	0.0258323712452907	-3.38872302034399	down	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9899	chr19	55901077	55905771	+	55901077	55905786	A3SS	ENSMUST00000111662.11	known	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.22	2	7	2	7	n	0.21	4	15	4	15	y	0.12	2	15	2	15	y	0.05	1	18	1	18	n	0.0395698386129369	-2.8948515141983	down	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9950	chr19	5767224	5770714	-	5767224	5767690	A5SS&ES	ENSMUST00000049295.15	known	0.46	6	7	6	7	y	0.00	0	1	0	1	n	0.33	6	12	6	12	y	0.17	1	5	1	5	n	0.50	2	2	2	2	n	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.60	3	2	3	2	n	0.0176525668685633	-3.25449609625289	down	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
known_NIR_9990	chr19	60800111	60803050	+	60800111	60803030	A3SS	ENSMUST00000128357.8	known	0.75	44	15	44	15	y	0.86	32	5	32	5	y	0.87	40	6	40	6	y	0.83	39	8	39	8	y	0.88	30	4	30	4	y	0.92	35	3	35	3	y	0.93	27	2	27	2	y	1.00	33	0	33	0	n	0.0296264830970092	-2.8445989382101	down	ENSMUSG00000024993.16	Dennd10	chr19	protein_coding	DENN domain containing 10
known_NIR_10011	chr19	6114228;6117052	6116998;6117699	-	6114228;6117349	6116341;6117699	MXE	ENSMUST00000161090.8	known	0.03	10.0	299.0	0;20	319;279	n	0.01	1.5	134.5	0;3	126;143	n	0.02	7.0	353.0	1;13	405;301	n	0.02	4.0	174.0	0;8	197;151	n	0.04	14.0	331.5	0;28	367;296	n	0.04	22.5	493.5	0;45	562;425	n	0.04	17.5	389.5	1;34	464;315	n	0.04	14.5	380.5	3;26	470;291	y	0.0162766034594286	-4.89897948556636	down	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10013	chr19	6117052	6117699	-	6117052	6117153	A5SS&ES	ENSMUST00000162549.2	known	0.07	20	273	20	273	y	0.02	3	119	3	119	y	0.04	13	280	13	280	y	0.06	8	134	8	134	y	0.09	28	282	28	282	y	0.11	45	378	45	378	y	0.09	34	338	34	338	y	0.07	26	367	26	367	y	0.0239684944691547	-3.08666041661089	down	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10014	chr19	6117052	6117699	-	6117052;6117349	6117153;6117699	ES	ENSMUST00000159084.8	known	0.07	20	276.0	20	273;279	y	0.02	3	131.0	3	119;143	y	0.04	13	290.5	13	280;301	y	0.05	8	142.5	8	134;151	y	0.09	28	289.0	28	282;296	y	0.10	45	401.5	45	378;425	y	0.09	34	326.5	34	338;315	y	0.07	26	329.0	26	367;291	y	0.0177685467476308	-3.49446242012041	down	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10035	chr19	6403220	6403291	+	6403220	6403308	A3SS	ENSMUST00000133696.8	known	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.00	0	42	0	42	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.05	2	37	2	37	y	0.03	1	36	1	36	n	0.05	2	39	2	39	y	0.0309152072016079	-3.85120444808304	down	ENSMUSG00000024948.16	Map4k2	chr19	protein_coding	mitogen-activated protein kinase kinase kinase kinase 2
known_NIR_10220	chr2	119046788	119047110	+	119046788;119047022	119046913;119047110	ES	ENSMUST00000090174.11	known	0.00	0	61.0	0	43;79	n	0.00	0	26.0	0	21;31	n	0.00	0	52.0	0	41;63	n	0.00	0	31.0	0	30;32	n	0.02	1	40.0	1	35;45	n	0.03	2	66.5	2	54;79	y	0.03	2	63.5	2	61;66	y	0.02	1	62.5	1	49;76	n	0.00323903707654442	-8.66025403784439	down	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10221	chr2	119046788	119047110	+	119047022	119047110	A5SS	ENSMUST00000147584.2	known	0.00	0	79	0	79	n	0.00	0	31	0	31	n	0.00	0	63	0	63	n	0.00	0	32	0	32	n	0.02	1	45	1	45	n	0.02	2	79	2	79	y	0.03	2	66	2	66	y	0.01	1	76	1	76	n	0.0162766034594286	-4.89897948556636	down	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10318	chr2	12404948;12408977	12408809;12410671	-	12404948;12405887	12405836;12410671	MXE	ENSMUST00000129348.2	known	0.05	3.5	61.5	1;6	116;7	n	0.00	0.0	9.0	0;0	16;2	n	0.05	2.0	41.5	2;2	80;3	y	0.00	0.0	20.5	0;0	40;1	n	0.13	6.0	41.5	0;12	78;5	n	0.10	6.0	54.5	3;9	98;11	y	0.07	2.5	33.0	1;4	62;4	n	0.08	4.5	54.5	3;6	103;6	y	0.0118597466124062	-3.57527742918674	down	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10487	chr2	148523375	148525514	+	148523135	148525514	A5SS	ENSMUST00000028928.8	known	0.28	8	21	8	21	y	0.20	1	4	1	4	n	0.32	6	13	6	13	y	0.13	3	20	3	20	y	0.44	8	10	8	10	y	0.59	13	9	13	9	y	0.55	6	5	6	5	y	0.29	8	20	8	20	y	0.0310139815441057	-2.96170126579685	down	ENSMUSG00000027439.10	Gzf1	chr2	protein_coding	GDNF-inducible zinc finger protein 1
known_NIR_10514	chr2	152542188	152546542	+	152542188	152545915	3pMXE	ENSMUST00000079247.4	known	0.92	996	84	996	84	y	0.90	802	94	802	94	y	0.91	996	93	996	93	y	0.92	746	65	746	65	y	0.93	700	54	700	54	y	0.94	986	59	986	59	y	0.95	977	55	977	55	y	0.95	879	49	879	49	y	0.00441695651352166	-4.43129367525597	down	ENSMUSG00000019188.17	H13	chr2	protein_coding	histocompatibility 13
known_NIR_10607	chr2	156019305;156019826	156019553;156021097	-	156019305;156020872	156020800;156021097	MXE	ENSMUST00000155837.8	known	0.01	0.5	36.0	0;1	27;45	n	0.00	0.0	21.0	0;0	10;32	n	0.00	0.0	31.5	0;0	26;37	n	0.08	1.5	16.5	2;1	8;25	n	0.13	2.5	17.0	3;2	12;22	y	0.06	1.0	14.5	0;2	11;18	n	0.07	1.5	21.5	0;3	13;30	n	0.13	3.0	20.0	3;3	11;29	y	0.0321220864230581	-2.77746029931765	down	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10609	chr2	156019826	156021097	-	156020872	156021097	3pMXE	ENSMUST00000137340.2	known	0.02	1	45	1	45	n	0.00	0	32	0	32	n	0.00	0	37	0	37	n	0.04	1	25	1	25	n	0.08	2	22	2	22	y	0.10	2	18	2	18	y	0.09	3	30	3	30	y	0.09	3	29	3	29	y	0.00186404475126849	-7.20576692122892	down	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10693	chr2	164404724;164405371	164405228;164407712	+	164404724	164407712	cassetteExon	ENSMUST00000109344.9	known	0.94	61.5	4	122;1	4	n	0.96	51.0	2	100;2	2	y	0.92	89.0	8	175;3	8	y	0.98	60.0	1	119;1	1	n	1.00	17.0	0	34;0	0	n	0.98	55.5	1	110;1	1	n	1.00	24.5	0	49;0	0	n	1.00	16.0	0	32;0	0	n	0.032778803241622	-3.25041803331577	down	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10696	chr2	164406132	164407712	+	164404724	164407712	A5SS	ENSMUST00000109344.9	known	0.96	105	4	105	4	y	0.98	96	2	96	2	y	0.97	222	8	222	8	y	0.99	129	1	129	1	n	1.00	36	0	36	0	n	0.99	109	1	109	1	n	1.00	49	0	49	0	n	1.00	44	0	44	0	n	0.0327788032416219	-3.25041803331578	down	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10706	chr2	164675116	164675950	+	164675770	164675950	5pMXE	ENSMUST00000146525.2	known	0.05	12	245	12	245	y	0.00	0	120	0	120	n	0.07	16	201	16	201	y	0.03	4	140	4	140	y	0.09	12	116	12	116	y	0.07	18	242	18	242	y	0.13	19	128	19	128	y	0.14	29	185	29	185	y	0.0202481338741427	-3.1436209919735	down	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10728	chr2	165647297	165649439	-	165647297	165649595	A5SS	ENSMUST00000109266.11	known	0.16	5	26	5	26	y	0.08	1	11	1	11	n	0.22	5	18	5	18	y	0.08	1	12	1	12	n	0.50	8	8	8	8	y	0.39	7	11	7	11	y	0.26	6	17	6	17	y	0.47	7	8	7	8	y	0.00780202398269759	-4.25139743675997	down	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10862	chr2	180902191	180906763	-	180902191	180906774	A5SS	ENSMUST00000049032.13	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.12	2	15	2	15	y	0.08	2	22	2	22	y	0.15	2	11	2	11	y	0.22	6	21	6	21	y	0.0466044568202294	-2.50442373190754	down	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
known_NIR_10888	chr2	181190634;181190793	181190719;181191066	+	181190634	181191066	cassetteExon	ENSMUST00000072334.12	known	0.44	52.5	68	59;46	68	y	0.39	29.0	45	30;28	45	y	0.41	42.5	61	48;37	61	y	0.42	27.0	38	29;25	38	y	0.56	34.5	27	39;30	27	y	0.47	51.0	58	57;45	58	y	0.48	31.5	34	28;35	34	y	0.54	46.5	40	50;43	40	y	0.0143605563227024	-3.98734933305733	down	ENSMUSG00000000826.17	Dnajc5	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C5
known_NIR_10897	chr2	181216830	181223196	-	181216830	181223649	A5SS	ENSMUST00000057816.15	known	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.11	3	24	3	24	y	0.10	3	26	3	26	y	0.04	1	25	1	25	n	0.06	2	31	2	31	y	0.0183133509094078	-4.69122943243946	down	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_11206	chr2	31650127	31668346	+	31579954	31668346	A5SS	ENSMUST00000075759.13	known	0.16	3	16	3	16	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.41	7	10	7	10	y	0.31	4	9	4	9	y	0.45	5	6	5	6	y	0.40	10	15	10	15	y	0.000568508712235469	-7.08850060133052	down	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
known_NIR_11212	chr2	32108771	32109229	+	32108771	32109226	A3SS	ENSMUST00000036691.14	known	0.70	33	14	33	14	y	0.63	19	11	19	11	y	0.69	29	13	29	13	y	0.69	20	9	20	9	y	0.79	22	6	22	6	y	0.70	32	14	32	14	y	0.79	19	5	19	5	y	0.76	32	10	32	10	y	0.0230972813220987	-3.10437886566587	down	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11242	chr2	32311611	32313806	-	32311611	32341079	A5SS	ENSMUST00000028160.15	known	0.96	191	7	191	7	y	0.94	105	7	105	7	y	0.97	171	6	171	6	y	0.94	101	6	101	6	y	0.99	320	3	320	3	y	0.98	487	9	487	9	y	0.96	90	4	90	4	y	0.98	636	10	636	10	y	0.0444277767619917	-2.55376959227626	down	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
known_NIR_11277	chr2	33345135	33354926	-	33345135	33352278	5pMXE	ENSMUST00000095035.3	known	0.73	16	6	16	6	y	0.77	10	3	10	3	y	0.83	10	2	10	2	y	0.85	11	2	11	2	y	0.93	14	1	14	1	n	0.88	15	2	15	2	y	0.92	12	1	12	1	n	0.86	19	3	19	3	y	0.0248275568812929	-3.19184567106224	down	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
known_NIR_11292	chr2	3437530	3438067	+	3437530	3438026	A3SS	ENSMUST00000100463.10	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.18	2	9	2	9	y	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.0321907490531857	-3.79147348001732	down	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
known_NIR_11309	chr2	34757049	34764657	-	34757049	34760762	5pMXE	ENSMUST00000028225.12	known	0.03	2	65	2	65	y	0.05	1	20	1	20	n	0.08	5	56	5	56	y	0.03	1	30	1	30	n	0.14	5	32	5	32	y	0.16	13	69	13	69	y	0.10	5	46	5	46	y	0.10	6	52	6	52	y	0.00744782327598888	-4.05885275838946	down	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
known_NIR_11339	chr2	37333468	37359528	+	37333468	37359389	A3SS	ENSMUST00000133434.8	known	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.29	5	12	5	12	y	0.38	3	5	3	5	n	0.33	2	4	2	4	n	0.0305455974771935	-2.84794916022489	down	ENSMUSG00000035437.16	Rabgap1	chr2	protein_coding	RAB GTPase activating protein 1
known_NIR_11359	chr2	38937778	38940171	-	38937778;38938450	38938322;38940171	ES	ENSMUST00000039165.15	known	0.10	3	27.0	3	33;21	y	0.00	0	21.0	0	23;19	n	0.00	0	18.0	0	15;21	n	0.00	0	22.0	0	19;25	n	0.22	3	10.5	3	16;5	y	0.21	4	15.0	4	18;12	y	0.15	3	16.5	3	17;16	y	0.27	6	16.5	6	20;13	y	0.00175666347138022	-5.34352874909322	down	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
known_NIR_11364	chr2	43489654	43492255	+	43489654;43490808	43490737;43492255	ES	ENSMUST00000028223.9	known	0.07	27	352.5	27	338;367	y	0.04	6	128.0	6	133;123	y	0.07	22	286.5	22	278;295	y	0.08	16	182.0	16	171;193	y	0.09	34	352.0	34	330;374	y	0.09	43	418.5	43	408;429	y	0.14	40	253.0	40	258;248	y	0.13	85	568.0	85	552;584	y	0.028162135435693	-3.01675990694229	down	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
known_NIR_11434	chr2	58645434;58649943	58649795;58653687	+	58645434	58653687	cassetteExon	ENSMUST00000071543.12	known	0.01	1.0	113	2;0	113	n	0.00	0.0	10	0;0	10	n	0.01	2.0	235	4;0	235	n	0.00	0.0	11	0;0	11	n	0.03	21.0	636	14;28	636	y	0.03	22.5	825	9;36	825	y	0.03	14.0	511	6;22	511	y	0.03	39.0	1265	11;67	1265	y	0.00323903707654442	-8.66025403784439	down	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11444	chr2	59045158;59119596	59119562;59135410	+	59045158;59096844	59096732;59135410	MXE	ENSMUST00000183625.8	known	0.49	31.5	32.5	6;57	58;7	y	0.54	10.0	8.5	3;17	15;2	y	0.52	31.5	29.0	4;59	51;7	y	0.48	14.5	15.5	3;26	30;1	n	0.58	28.5	21.0	6;51	40;2	y	0.55	46.0	37.0	12;80	70;4	y	0.52	30.0	28.0	6;54	53;3	y	0.57	52.0	39.5	11;93	71;8	y	0.0473735320003166	-2.48768394869031	down	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11574	chr2	76496154;76497786	76497671;76502041	-	76496154	76502041	cassetteExon	ENSMUST00000002809.14	known	0.12	2.5	18	3;2	18	y	0.00	0.0	4	0;0	4	n	0.03	0.5	18	0;1	18	n	0.00	0.0	15	0;0	15	n	0.18	2.0	9	3;1	9	n	0.12	1.0	7	0;2	7	n	0.25	4.0	12	5;3	12	y	0.22	4.0	14	5;3	14	y	0.00817190720165602	-3.88005544898604	down	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
known_NIR_11597	chr2	83555263	83566857	+	83555263	83566854	A3SS	ENSMUST00000125360.8	known	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.50	4	4	4	4	n	1.00	1	0	1	0	n	0.43	3	4	3	4	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.0238936523068215	-3.07319324425497	down	ENSMUSG00000027087.12	Itgav	chr2	protein_coding	integrin alpha V
known_NIR_11673	chr2	91024041	91025378	-	91024041	91025076	A5SS	ENSMUST00000111356.8	known	0.75	143	47	143	47	y	0.70	63	27	63	27	y	0.71	111	45	111	45	y	0.76	72	23	72	23	y	0.77	105	31	105	31	y	0.82	141	31	141	31	y	0.76	102	33	102	33	y	0.79	139	37	139	37	y	0.0324163437976639	-2.77910133951951	down	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11738	chr2	93826737	93833398	-	93826737;93831858	93831770;93833398	ES	ENSMUST00000111240.8	known	0.04	3	68.5	3	67;70	y	0.03	1	32.5	1	27;38	n	0.03	2	73.0	2	70;76	y	0.03	1	33.0	1	25;41	n	0.04	2	50.0	2	46;54	y	0.08	8	94.0	8	83;105	y	0.06	4	62.5	4	60;65	y	0.06	4	68.0	4	52;84	y	0.0381483790299247	-3.22047024073016	down	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
known_NIR_11885	chr3	119517835	119519715	-	119517835;119518294	119518261;119519715	ES	ENSMUST00000029780.12	known	0.32	3	6.5	3	8;5	y	0.00	0	1.0	0	0;2	n	0.43	12	16.0	12	17;15	y	0.18	1	4.5	1	4;5	n	0.62	10	6.0	10	6;6	y	0.38	3	5.0	3	5;5	y	0.70	7	3.0	7	4;2	y	0.54	7	6.0	7	5;7	y	0.0324443471537205	-2.8408978751079	down	ENSMUSG00000028134.12	Ptbp2	chr3	protein_coding	polypyrimidine tract binding protein 2
known_NIR_11928	chr3	129805521	129827480	-	129805521;129814291	129814187;129827480	ES	ENSMUST00000001079.15	known	0.68	25	11.5	25	13;10	y	0.51	9	8.5	9	8;9	y	0.35	6	11.0	6	9;13	y	0.44	4	5.0	4	4;6	y	0.77	5	1.5	5	3;0	n	0.65	11	6.0	11	5;7	y	0.74	7	2.5	7	3;2	y	0.77	10	3.0	10	4;2	y	0.0348931612301247	-3.15095110233163	down	ENSMUSG00000001052.16	Sec24b	chr3	protein_coding	Sec24 related gene family, member B (S. cerevisiae)
known_NIR_11945	chr3	134994448	134995316	+	134994100	134995316	A5SS	ENSMUST00000120397.8	known	0.04	1	26	1	26	n	0.00	0	3	0	3	n	0.05	2	37	2	37	y	0.00	0	5	0	5	n	0.09	4	42	4	42	y	0.10	8	70	8	70	y	0.09	5	48	5	48	y	0.10	8	76	8	76	y	0.00986381428916244	-5.3851648071345	down	ENSMUSG00000028167.16	Bdh2	chr3	protein_coding	3-hydroxybutyrate dehydrogenase, type 2
known_NIR_12032	chr3	146156385	146159918	+	146156385	146160102	A3SS	ENSMUST00000061937.13	known	0.00	0	66	0	66	n	0.00	0	32	0	32	n	0.00	0	52	0	52	n	0.03	1	32	1	32	n	0.05	2	41	2	41	y	0.02	1	56	1	56	n	0.03	1	35	1	35	n	0.04	2	53	2	53	y	0.0327835930545124	-2.77910133951951	down	ENSMUSG00000028189.13	Ctbs	chr3	protein_coding	chitobiase
known_NIR_12037	chr3	146302988	146315734	+	146302988	146318038	A3SS	ENSMUST00000121133.2	known	0.57	41	31	41	31	y	0.52	15	14	15	14	y	0.43	30	39	30	39	y	0.48	15	16	15	16	y	0.67	44	22	44	22	y	0.59	58	40	58	40	y	0.62	40	25	40	25	y	0.62	87	53	87	53	y	0.0160522780259577	-3.67276580155794	down	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12143	chr3	22131118;22157111	22157031;22203106	+	22131118	22203106	cassetteExon	ENSMUST00000202747.4	known	0.12	1.0	7	1;1	7	n	0.04	0.5	12	0;1	12	n	0.23	3.0	10	1;5	10	n	0.14	2.0	12	1;3	12	n	-	-	-	-	-	-	0.33	7.0	14	4;10	14	y	0.23	1.5	5	1;2	5	n	0.38	2.5	4	3;2	4	n	0.0317492182457715	-3.07099387898554	down	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12150	chr3	27697238	27765269	-	27697238	27764495	5pMXE	ENSMUST00000046157.10	known	0.62	21	13	21	13	y	0.71	17	7	17	7	y	0.46	6	7	6	7	y	0.68	15	7	15	7	y	0.75	6	2	6	2	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	0.00896455512839546	-3.82132117776981	down	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
known_NIR_12155	chr3	28860741	28860819	+	28860741	28860886	A3SS	ENSMUST00000043867.11	known	0.04	37	931	37	931	y	0.02	12	733	12	733	y	0.04	41	1087	41	1087	y	0.01	9	666	9	666	y	0.04	23	540	23	540	y	0.08	53	632	53	632	y	0.07	54	703	54	703	y	0.08	57	659	57	659	y	0.0174216304490538	-3.3123146848433	down	ENSMUSG00000039221.11	Rpl22l1	chr3	protein_coding	ribosomal protein L22 like 1
known_NIR_12168	chr3	32785405	32786707	-	32785405	32787738	A5SS	ENSMUST00000043966.8	known	0.00	0	54	0	54	n	0.00	0	23	0	23	n	0.00	0	46	0	46	n	0.00	0	33	0	33	n	0.02	1	40	1	40	n	0.01	1	72	1	72	n	0.02	1	56	1	56	n	0.03	2	62	2	62	y	0.0162766034594286	-4.89897948556636	down	ENSMUSG00000037531.9	Mrpl47	chr3	protein_coding	mitochondrial ribosomal protein L47
known_NIR_12231	chr3	54712888	54714620	-	54712888	54713173	5pMXE	ENSMUST00000182246.2	known	0.95	62	3	62	3	y	0.91	30	3	30	3	y	0.93	37	3	37	3	y	0.92	23	2	23	2	y	1.00	37	0	37	0	n	0.96	49	2	49	2	y	0.95	41	2	41	2	y	0.96	55	2	55	2	y	0.0309763250825572	-2.85835840404199	down	ENSMUSG00000036615.8	Rfxap	chr3	protein_coding	regulatory factor X-associated protein
known_NIR_12324	chr3	83820692	83826758	-	83820695	83826758	A3SS	ENSMUST00000191758.6	known	0.00	0	26	0	26	n	0.00	0	6	0	6	n	0.09	3	31	3	31	y	0.06	1	17	1	17	n	0.07	1	14	1	14	n	0.19	8	35	8	35	y	0.21	7	27	7	27	y	0.22	8	29	8	29	y	0.0215016619655844	-3.26225930398296	down	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
known_NIR_12348	chr3	87826958;87827135	87827110;87829124	+	87826958	87829124	cassetteExon	ENSMUST00000121920.8	known	0.66	89.0	45	18;160	45	y	0.71	58.0	24	11;105	24	y	0.65	78.0	42	7;149	42	y	0.66	43.0	22	3;83	22	y	0.80	71.0	18	4;138	18	y	0.78	113.0	31	15;211	31	y	0.82	93.0	20	7;179	20	y	0.74	93.5	33	12;175	33	y	0.00218782997877075	-5.27656187902292	down	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12394	chr3	88459824	88460037	-	88459824	88460103	A5SS	ENSMUST00000029698.15	known	0.04	18	492	18	492	y	0.03	7	236	7	236	y	0.03	15	504	15	504	y	0.04	10	253	10	253	y	0.04	15	358	15	358	y	0.07	32	434	32	434	y	0.05	22	399	22	399	y	0.06	23	389	23	389	y	0.0453983125632167	-2.82842712474619	down	ENSMUSG00000028062.16	Lamtor2	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
known_NIR_12437	chr3	89110393;89110667	89110499;89110779	+	89110393	89110779	cassetteExon	ENSMUST00000077367.11	known	0.10	10.0	86	9;11	86	y	0.02	1.5	60	1;2	60	n	0.06	3.0	51	2;4	51	y	0.06	4.0	58	3;5	58	y	0.09	3.0	32	5;1	32	n	0.14	9.5	59	11;8	59	y	0.14	8.5	53	10;7	53	y	0.10	5.0	43	4;6	43	y	0.0351968080458463	-2.74250378563422	down	ENSMUSG00000028048.12	Gba	chr3	protein_coding	glucosidase, beta, acid
known_NIR_12455	chr3	89318687	89318868	-	89318687	89319053	A5SS	ENSMUST00000107426.8	known	0.51	19	18	19	18	y	0.52	14	13	14	13	y	0.55	26	21	26	21	y	0.56	20	16	20	16	y	0.61	23	15	23	15	y	0.69	31	14	31	14	y	0.57	17	13	17	13	y	0.61	20	13	20	13	y	0.0347045572540631	-3.05329013445517	down	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12595	chr3	95226264	95227373	+	95222656	95227373	A5SS	ENSMUST00000015858.12	known	0.35	215	406	215	406	y	0.20	55	227	55	227	y	0.32	166	353	166	353	y	0.27	84	229	84	229	y	0.47	213	241	213	241	y	0.42	268	365	268	365	y	0.46	238	277	238	277	y	0.43	236	314	236	314	y	0.0115831250961072	-4.58705743264797	down	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
known_NIR_12678	chr4	102972020	102972757	+	102971716	102972757	A5SS	ENSMUST00000136092.2	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.33	2	4	2	4	n	0.21	3	11	3	11	y	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.025088218899724	-4.02364552615636	down	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
known_NIR_12758	chr4	108959789	108990941	-	108959789	108975092	5pMXE	ENSMUST00000084366.13	known	0.12	25	192	25	192	y	0.10	8	73	8	73	y	0.18	29	136	29	136	y	0.16	19	102	19	102	y	0.19	25	109	25	109	y	0.23	44	146	44	146	y	0.31	39	88	39	88	y	0.22	40	143	40	143	y	0.0241307499724246	-3.0994057155322	down	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12863	chr4	118384534	118386396	+	118384441	118386396	A5SS	ENSMUST00000106367.8	known	0.38	11	18	11	18	y	0.44	4	5	4	5	n	0.51	21	20	21	20	y	0.56	10	8	10	8	y	0.57	23	17	23	17	y	0.69	31	14	31	14	y	0.71	22	9	22	9	y	0.55	17	14	17	14	y	0.0322776820166173	-2.77431659678298	down	ENSMUSG00000028536.13	2610528J11Rik	chr4	protein_coding	RIKEN cDNA 2610528J11 gene
known_NIR_12883	chr4	119209849	119210267	-	119207071	119210267	A3SS	ENSMUST00000238759.2	known	0.44	4	5	4	5	n	0.50	2	2	2	2	n	0.62	8	5	8	5	y	0.57	4	3	4	3	n	0.73	8	3	8	3	y	0.75	18	6	18	6	y	0.82	14	3	14	3	y	0.57	12	9	12	9	y	0.0336034923097899	-2.80630710004965	down	ENSMUSG00000028637.17	Ccdc30	chr4	protein_coding	coiled-coil domain containing 30
known_NIR_12921	chr4	123814234	123814744	+	123813845	123814744	A5SS	ENSMUST00000030399.7	known	0.02	2	111	2	111	y	0.00	0	48	0	48	n	0.00	0	97	0	97	n	0.00	0	68	0	68	n	0.03	2	73	2	73	y	0.02	2	124	2	124	y	0.03	2	70	2	70	y	0.01	1	116	1	116	n	0.0448673860955738	-2.52810291480115	down	ENSMUSG00000028646.17	Rragc	chr4	protein_coding	Ras-related GTP binding C
known_NIR_12996	chr4	129494927	129495663	+	129495326	129495663	A5SS&ES	ENSMUST00000129515.8	known	0.43	15	20	15	20	y	0.40	6	9	6	9	y	0.46	19	22	19	22	y	0.48	10	11	10	11	y	0.64	23	13	23	13	y	0.54	22	19	22	19	y	0.70	19	8	19	8	y	0.52	22	20	22	20	y	0.0265738805698025	-3.43182867742791	down	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13040	chr4	129512155	129512285	-	129511709	129512285	A3SS	ENSMUST00000046675.12	known	0.33	14	29	14	29	y	0.17	2	10	2	10	y	0.36	9	16	9	16	y	0.23	3	10	3	10	y	0.58	11	8	11	8	y	0.49	20	21	20	21	y	0.38	8	13	8	13	y	0.41	12	17	12	17	y	0.0221282915594647	-3.06370358934694	down	ENSMUSG00000040795.13	Iqcc	chr4	protein_coding	IQ motif containing C
known_NIR_13069	chr4	131663178;131664775	131664326;131684954	-	131663178	131684954	cassetteExon	ENSMUST00000146443.8	known	0.85	149.0	26	166;132	26	y	0.86	121.5	20	152;91	20	y	0.86	134.5	22	153;116	22	y	0.85	100.5	18	118;83	18	y	0.90	77.5	9	90;65	9	y	0.94	131.0	8	131;131	8	y	0.90	91.5	10	100;83	10	y	0.91	139.0	14	180;98	14	y	0.00624708602101342	-5.81084825535899	down	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13109	chr4	132400343	132417016	+	132400343;132408204	132408067;132417016	ES	ENSMUST00000135299.8	known	0.94	25	1.5	25	1;2	n	0.91	15	1.5	15	2;1	n	0.91	21	2.0	21	2;2	y	0.91	24	2.5	24	4;1	n	0.94	16	1.0	16	0;2	n	1.00	27	0.0	27	0;0	n	1.00	19	0.0	19	0;0	n	0.94	23	1.5	23	0;3	n	0.0485566704091129	-2.78151794983659	down	ENSMUSG00000028886.16	Eya3	chr4	protein_coding	EYA transcriptional coactivator and phosphatase 3
known_NIR_13165	chr4	134652743	134654046	+	134653461	134654046	5pMXE	ENSMUST00000149003.2	known	0.93	337	27	337	27	y	0.91	81	8	81	8	y	0.96	389	15	389	15	y	0.93	184	14	184	14	y	0.96	267	11	267	11	y	0.98	961	15	961	15	y	0.95	198	11	198	11	y	0.97	606	17	606	17	y	0.0438809207452044	-2.67223596832737	down	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13169	chr4	134653132	134654046	+	134653461	134654046	A5SS	ENSMUST00000149003.2	known	0.16	5	27	5	27	y	0.00	0	8	0	8	n	0.29	6	15	6	15	y	0.12	2	14	2	14	y	0.39	7	11	7	11	y	0.29	6	15	6	15	y	0.45	9	11	9	11	y	0.39	11	17	11	17	y	0.0197258259892777	-3.4743182359474	down	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13322	chr4	148234123	148236399	-	148234123	148235545	5pMXE	ENSMUST00000105706.8	known	0.54	7	6	7	6	y	0.50	10	10	10	10	y	0.61	11	7	11	7	y	0.57	8	6	8	6	y	0.75	6	2	6	2	n	0.83	10	2	10	2	y	0.58	7	5	7	5	y	0.82	9	2	9	2	y	0.0387299969035054	-3.04895676241166	down	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13406	chr4	154108274;154108807	154108524;154109961	-	154108274	154109961	cassetteExon	ENSMUST00000125533.9	known	0.08	1.0	12	0;2	12	n	0.14	0.5	3	1;0	3	n	0.06	1.0	15	0;2	15	n	0.14	0.5	3	0;1	3	n	0.33	2.5	5	1;4	5	n	0.12	2.0	15	4;0	15	n	0.38	5.0	8	3;7	8	y	0.33	1.5	3	3;0	3	n	0.0429406366756201	-3.01101729745329	down	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13419	chr4	155167211	155170662	-	155167211;155167774	155167566;155170662	ES	ENSMUST00000149796.2	known	0.77	344	105.0	344	136;74	y	0.77	176	51.5	176	66;37	y	0.78	292	83.0	292	115;51	y	0.79	186	49.0	186	56;42	y	0.81	197	47.0	197	51;43	y	0.83	332	67.0	332	87;47	y	0.85	268	48.5	268	57;40	y	0.83	255	54.0	255	58;50	y	0.002888615659502	-5.54684070985142	down	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
known_NIR_13637	chr4	45105644;45106888	45106615;45107913	-	45105644	45107913	cassetteExon	ENSMUST00000107810.3	known	0.03	5.0	146	0;10	146	n	0.02	1.0	60	0;2	60	n	0.03	4.0	149	0;8	149	n	0.03	1.5	52	0;3	52	n	0.03	2.5	92	0;5	92	n	0.05	8.0	158	2;14	158	y	0.05	7.5	158	0;15	158	n	0.05	6.0	124	0;12	124	n	0.0307597787889487	-3.1304951684997	down	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
known_NIR_13714	chr4	60139352	60140650	-	60139352	60139691	5pMXE	ENSMUST00000074700.9	known	0.00	5	2638	5	2638	y	0.00	0	1412	0	1412	n	0.00	5	1991	5	1991	y	0.00	1	918	1	918	n	0.03	70	2686	70	2686	y	0.03	56	1761	56	1761	y	0.02	70	2754	70	2754	y	0.06	29	421	29	421	y	0.0272618544093613	-4.04145188432738	down	ENSMUSG00000078688.12	Mup2	chr4	protein_coding	major urinary protein 2
known_NIR_13987	chr5	110938820	110938918	-	110938802	110938918	A3SS	ENSMUST00000031490.11	known	0.23	27	88	27	88	y	0.16	9	46	9	46	y	0.27	24	66	24	66	y	0.15	7	40	7	40	y	0.37	21	36	21	36	y	0.31	39	86	39	86	y	0.22	15	54	15	54	y	0.33	30	60	30	60	y	0.0498529898494638	-2.4550631054896	down	ENSMUSG00000029512.12	Ulk1	chr5	protein_coding	unc-51 like kinase 1
known_NIR_14069	chr5	119812358;119813367	119813308;119813623	+	119812358	119813623	cassetteExon	ENSMUST00000079719.11	known	0.10	4.5	40	8;1	40	n	0.00	0.0	17	0;0	17	n	0.09	2.5	24	2;3	24	y	0.04	0.5	12	1;0	12	n	0.22	5.5	20	6;5	20	y	0.13	9.5	62	10;9	62	y	0.20	2.5	10	2;3	10	y	0.09	1.5	16	0;3	16	n	0.0386449802800007	-2.68599930652972	down	ENSMUSG00000018604.19	Tbx3	chr5	protein_coding	T-box 3
known_NIR_14100	chr5	121672493	121675175	-	121672493;121674006	121673917;121675175	ES	ENSMUST00000031410.14	known	0.06	5	73.0	5	73;73	y	0.00	0	38.0	0	33;43	n	0.05	4	73.0	4	71;75	y	0.04	2	46.0	2	44;48	y	0.07	4	54.0	4	63;45	y	0.09	8	81.0	8	77;85	y	0.06	4	58.0	4	59;57	y	0.11	8	66.0	8	67;65	y	0.0408400507813905	-2.61630854880215	down	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14155	chr5	122938656	122940193	-	122938695	122940193	A3SS	ENSMUST00000086216.9	known	0.38	73	117	73	117	y	0.39	39	60	39	60	y	0.41	81	116	81	116	y	0.45	46	57	46	57	y	0.52	44	41	44	41	y	0.45	81	98	81	98	y	0.43	65	87	65	87	y	0.48	84	91	84	91	y	0.0483599448032983	-2.50417711235317	down	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14302	chr5	130282850	130284051	-	130282909	130284051	A3SS	ENSMUST00000026387.11	known	0.00	0	135	0	135	n	0.00	0	70	0	70	n	0.00	0	138	0	138	n	0.01	1	66	1	66	n	0.01	1	101	1	101	n	0.01	2	172	2	172	y	0.02	2	118	2	118	y	0.01	2	134	2	134	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000025337.11	Sbds	chr5	protein_coding	SBDS ribosome maturation factor
known_NIR_14356	chr5	135161715	135161963	+	135161715	135161930	A3SS	ENSMUST00000142385.8	known	0.97	199	7	199	7	y	0.98	48	1	48	1	n	0.98	187	3	187	3	y	0.97	68	2	68	2	y	0.99	264	4	264	4	y	0.99	331	2	331	2	y	0.99	276	4	276	4	y	0.98	322	7	322	7	y	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14506	chr5	142759800	142760964	-	142759803	142760964	A3SS	ENSMUST00000152247.8	known	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.27	4	11	4	11	y	0.40	6	9	6	9	y	0.14	2	12	2	12	y	0.30	3	7	3	7	y	0.0116474628030229	-4.38667413739265	down	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14572	chr5	146205096	146208405	+	146205135	146208405	A5SS	ENSMUST00000162494.8	known	0.05	3	56	3	56	y	0.08	2	22	2	22	y	0.04	2	43	2	43	y	0.04	2	43	2	43	y	0.09	4	39	4	39	y	0.16	10	51	10	51	y	0.12	4	28	4	28	y	0.16	12	64	12	64	y	0.010594381216777	-4.10842072810476	down	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
known_NIR_14582	chr5	146896086	146900533	-	146896086;146900190	146900031;146900533	ES	ENSMUST00000016654.9	known	0.68	19	9.0	19	16;2	y	0.55	6	5.0	6	6;4	y	0.48	5	5.5	5	8;3	y	0.57	8	6.0	8	5;7	y	0.67	20	10.0	20	18;2	y	0.75	21	7.0	21	13;1	n	0.74	20	7.0	20	10;4	y	0.68	16	7.5	16	12;3	y	0.0344881062990807	-3.03108891324553	down	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14617	chr5	150566780	150570466	-	150566780	150574080	A5SS	ENSMUST00000156180.2	known	0.97	114	4	114	4	y	0.97	63	2	63	2	y	0.95	114	6	114	6	y	0.96	49	2	49	2	y	1.00	82	0	82	0	n	1.00	102	0	102	0	n	0.97	111	3	111	3	y	0.99	102	1	102	1	n	0.0217488971517068	-3.22047024073017	down	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
known_NIR_14618	chr5	150571013	150574080	-	150566780	150574080	A3SS	ENSMUST00000156180.2	known	0.96	99	4	99	4	y	0.96	44	2	44	2	y	0.94	95	6	95	6	y	0.97	56	2	56	2	y	1.00	90	0	90	0	n	1.00	99	0	99	0	n	0.97	83	3	83	3	y	0.99	102	1	102	1	n	0.0142043357433742	-3.43375853466993	down	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
known_NIR_14668	chr5	24633271	24634414	+	24632634	24634414	A5SS	ENSMUST00000141966.8	known	0.21	9	34	9	34	y	0.00	0	14	0	14	n	0.10	3	26	3	26	y	0.10	2	18	2	18	y	0.39	7	11	7	11	y	0.37	10	17	10	17	y	0.17	4	19	4	19	y	0.25	5	15	5	15	y	0.0299524160693445	-2.8597082079266	down	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
known_NIR_14682	chr5	24684787	24687264	+	24684787	24688339	A3SS	ENSMUST00000024123.9	known	0.09	4	40	4	40	y	0.09	2	20	2	20	y	0.09	5	53	5	53	y	0.03	1	29	1	29	n	0.12	3	21	3	21	y	0.15	7	41	7	41	y	0.15	7	39	7	39	y	0.12	6	42	6	42	y	0.019184626915828	-3.46410161513776	down	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
known_NIR_14697	chr5	29958650	29961232	+	29958650	29969397	A3SS	ENSMUST00000008733.15	known	0.00	1	210	1	210	n	0.00	0	102	0	102	n	0.01	3	202	3	202	y	0.00	0	99	0	99	n	0.03	4	134	4	134	y	0.02	4	232	4	232	y	0.01	2	204	2	204	y	0.02	3	178	3	178	y	0.0148041432566231	-3.65563077506966	down	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
known_NIR_14720	chr5	31082199;31084166	31084032;31085787	+	31082199	31085787	cassetteExon	ENSMUST00000201571.4	known	0.50	13.0	13	19;7	13	y	0.44	9.5	12	14;5	12	y	0.62	25.0	15	40;10	15	y	0.56	7.5	6	11;4	6	y	0.71	24.0	10	41;7	10	y	0.68	28.0	13	50;6	13	y	0.73	24.0	9	38;10	9	y	0.64	25.0	14	42;8	14	y	0.0175360456355284	-3.68685778868433	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14722	chr5	31082199;31084500	31084032;31085787	+	31082199	31085787	cassetteExon	ENSMUST00000201571.4	known	0.97	451.0	13	19;883	13	y	0.95	227.5	12	14;441	12	y	0.97	575.5	15	40;1111	15	y	0.97	198.0	6	11;385	6	y	0.98	460.5	10	41;880	10	y	0.98	775.0	13	50;1500	13	y	0.99	655.0	9	38;1272	9	y	0.98	571.0	14	42;1100	14	y	0.0307597787889489	-3.1304951684997	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14887	chr5	38634836	38640660	-	38634836	38637382	5pMXE	ENSMUST00000067886.12	known	0.82	74	16	74	16	y	0.81	25	6	25	6	y	0.83	58	12	58	12	y	0.81	25	6	25	6	y	0.94	47	3	47	3	y	0.91	77	8	77	8	y	0.89	57	7	57	7	y	0.95	101	5	101	5	y	0.00260067260601583	-7.20294057598538	down	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14922	chr5	45859339	45893073	-	45859339;45885084	45880316;45893073	ES	ENSMUST00000238522.2	known	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.40	1	1.5	1	3;0	n	0.00	0	1.5	0	1;2	n	0.57	2	1.5	2	2;1	n	0.55	3	2.5	3	1;4	n	0.86	3	0.5	3	1;0	n	0.47	4	4.5	4	7;2	y	0.0450150263705105	-3.02744814944258	down	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_15358	chr6	124675140	124676970	+	124675140	124676202	3pMXE	ENSMUST00000141069.8	known	0.01	2	253	2	253	y	0.01	1	121	1	121	n	0.01	2	201	2	201	y	0.02	2	123	2	123	y	0.02	3	150	3	150	y	0.02	7	293	7	293	y	0.02	3	164	3	164	y	0.03	8	265	8	265	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000004270.14	Lpcat3	chr6	protein_coding	lysophosphatidylcholine acyltransferase 3
known_NIR_15359	chr6	124675140	124676970	+	124675140;124676308	124676202;124676970	ES	ENSMUST00000135516.8	known	0.01	2	242.0	2	253;231	y	0.01	1	106.5	1	121;92	n	0.01	2	194.5	2	201;188	y	0.02	2	117.0	2	123;111	y	0.02	3	145.5	3	150;141	y	0.02	7	289.5	7	293;286	y	0.02	3	167.5	3	164;171	y	0.03	8	263.5	8	265;262	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000004270.14	Lpcat3	chr6	protein_coding	lysophosphatidylcholine acyltransferase 3
known_NIR_15624	chr6	24527316	24527459	-	24527316	24527525	A5SS	ENSMUST00000118558.5	known	0.00	1	231	1	231	n	0.00	0	94	0	94	n	0.01	4	305	4	305	y	0.00	0	86	0	86	n	0.01	3	201	3	201	y	0.01	2	292	2	292	y	0.01	2	211	2	211	y	0.02	4	240	4	240	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000023089.13	Ndufa5	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit A5
known_NIR_15632	chr6	29356696;29361752	29361559;29366039	+	29356696;29361486	29361293;29366039	MXE	ENSMUST00000172974.8	known	0.47	106.0	120.5	83;129	124;117	y	0.40	100.5	149.0	82;119	130;168	y	0.45	85.0	106.0	67;103	101;111	y	0.36	95.0	166.0	71;119	146;186	y	0.53	56.0	49.5	39;73	38;61	y	0.53	87.5	78.5	86;89	63;94	y	0.51	48.5	46.5	39;58	34;59	y	0.47	81.5	90.5	86;77	92;89	y	0.0271648284885027	-3.14934395500694	down	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15731	chr6	38545852	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	known	0.65	41	22	41	22	y	0.40	19	28	19	28	y	0.55	43	35	43	35	y	0.58	33	24	33	24	y	0.83	43	9	43	9	y	0.66	64	33	64	33	y	0.72	33	13	33	13	y	0.68	75	36	75	36	y	0.0375111249113956	-2.73414180119214	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15749	chr6	3968050	3974531	-	3968050	3968237	5pMXE	ENSMUST00000031674.11	known	0.80	87	22	87	22	y	0.83	57	12	57	12	y	0.79	74	20	74	20	y	0.86	70	11	70	11	y	0.89	97	12	97	12	y	0.86	150	24	150	24	y	0.94	95	6	95	6	y	0.93	125	10	125	10	y	0.0134208745894478	-3.49446242012041	down	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
known_NIR_15762	chr6	42327053	42327191	+	42326639	42327191	A5SS	ENSMUST00000203329.3	known	0.73	11	4	11	4	y	0.78	7	2	7	2	n	0.87	13	2	13	2	y	0.67	2	1	2	1	n	1.00	9	0	9	0	n	0.86	12	2	12	2	y	0.88	15	2	15	2	y	0.93	14	1	14	1	n	0.0283364325842843	-2.94903926375786	down	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15833	chr6	48815296	48817930	-	48815296	48817295	5pMXE	ENSMUST00000203618.2	known	0.34	239	466	239	466	y	0.25	113	340	113	340	y	0.40	223	337	223	337	y	0.31	168	378	168	378	y	0.37	127	213	127	213	y	0.43	177	239	177	239	y	0.45	121	148	121	148	y	0.46	171	204	171	204	y	0.0388460512365717	-2.75795845538488	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15835	chr6	48815296	48817930	-	48817387	48817930	A3SS&ES	ENSMUST00000101429.11	known	0.34	239	465	239	465	y	0.27	113	305	113	305	y	0.36	223	398	223	398	y	0.30	168	391	168	391	y	0.37	127	212	127	212	y	0.37	177	299	177	299	y	0.39	121	187	121	187	y	0.40	171	252	171	252	y	0.0415344059027121	-3.0224386073393	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15841	chr6	48815299	48817295	-	48816379	48817295	A3SS&ES	ENSMUST00000203355.3	known	0.97	753	23	753	23	y	0.97	516	18	516	18	y	0.97	533	14	533	14	y	0.98	622	12	622	12	y	0.99	321	2	321	2	y	0.99	444	6	444	6	y	0.98	246	4	246	4	y	0.98	342	8	342	8	y	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15843	chr6	48815299	48817930	-	48817387	48817930	A3SS&ES	ENSMUST00000203229.3	known	0.50	465	465	465	465	y	0.42	222	305	222	305	y	0.53	441	398	441	398	y	0.46	329	391	329	391	y	0.58	296	212	296	212	y	0.54	352	299	352	299	y	0.57	248	187	248	187	y	0.55	314	252	314	252	y	0.0340208567605845	-3.22047024073016	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15844	chr6	48815299	48818282	-	48815299	48817295	5pMXE	ENSMUST00000164733.4	known	0.02	17	753	17	753	y	0.02	9	516	9	516	y	0.02	12	533	12	533	y	0.01	7	622	7	622	y	0.03	10	321	10	321	y	0.03	13	444	13	444	y	0.03	7	246	7	246	y	0.03	11	342	11	342	y	0.0153924380733023	-5	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15877	chr6	51521629	51538998	+	51501014	51538998	A5SS	ENSMUST00000049152.15	known	0.94	135	8	135	8	y	0.96	86	4	86	4	y	0.95	125	7	125	7	y	0.93	75	6	75	6	y	0.96	52	2	52	2	y	0.98	79	2	79	2	y	0.98	48	1	48	1	n	0.98	60	1	60	1	n	0.0115842322957838	-3.67423461417477	down	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15947	chr6	71520951	71529383	+	71521017	71529383	A5SS	ENSMUST00000059462.12	known	0.00	0	248	0	248	n	0.01	2	133	2	133	y	0.00	0	263	0	263	n	0.00	0	103	0	103	n	0.01	2	178	2	178	y	0.01	3	281	3	281	y	0.02	4	225	4	225	y	0.01	3	256	3	256	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_16259	chr7	100220496	100232197	-	100220496	100223669	A5SS&ES	ENSMUST00000146003.9	known	0.00	0	116	0	116	n	0.00	0	46	0	46	n	0.01	1	114	1	114	n	0.00	0	54	0	54	n	0.01	1	101	1	101	n	0.01	2	155	2	155	y	0.02	2	127	2	127	y	0.02	2	129	2	129	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16260	chr7	100220496	100232197	-	100220496;100223721	100223669;100232197	ES	ENSMUST00000150042.8	known	0.00	0	103.0	0	116;90	n	0.00	0	36.5	0	46;27	n	0.01	1	117.5	1	114;121	n	0.00	0	44.0	0	54;34	n	0.01	1	90.0	1	101;79	n	0.01	2	142.0	2	155;129	y	0.02	2	105.0	2	127;83	y	0.02	2	120.5	2	129;112	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16276	chr7	100946440	100949319	-	100948315	100949319	3pMXE	ENSMUST00000207121.2	known	0.05	1	21	1	21	n	0.06	2	31	2	31	y	0.03	1	36	1	36	n	0.05	1	21	1	21	n	0.11	2	16	2	16	y	0.05	1	19	1	19	n	0.11	1	8	1	8	n	0.11	2	17	2	17	y	0.0429221192760947	-2.92019846159779	down	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
known_NIR_16307	chr7	101547024	101547154	+	101547024	101547149	A3SS	ENSMUST00000209334.2	known	0.14	10	59	10	59	y	0.04	1	23	1	23	n	0.10	7	62	7	62	y	0.06	2	31	2	31	y	0.16	9	46	9	46	y	0.16	10	52	10	52	y	0.14	10	60	10	60	y	0.16	9	47	9	47	y	0.0476503883849479	-3.07958941544842	down	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16323	chr7	101666558	101667317	-	101666558;101666844	101666804;101667317	ES	ENSMUST00000094134.5	known	0.09	6	58.0	6	116;0	n	0.02	1	43.0	1	86;0	n	0.00	0	41.0	0	82;0	n	0.03	1	34.0	1	68;0	n	0.28	5	13.0	5	26;0	n	0.21	4	15.5	4	31;0	n	0.17	3	14.5	3	29;0	n	0.09	2	20.5	2	41;0	n	0.0226446488379604	-3.45529122262583	down	ENSMUSG00000070427.5	Il18bp	chr7	protein_coding	interleukin 18 binding protein
known_NIR_16324	chr7	101666558	101667317	-	101666558;101666871	101666804;101667317	ES	ENSMUST00000209844.2	known	0.08	6	68.0	6	116;20	y	0.02	1	49.0	1	86;12	n	0.00	0	49.5	0	82;17	n	0.03	1	36.5	1	68;5	n	0.24	5	15.5	5	26;5	y	0.19	4	17.0	4	31;3	y	0.16	3	16.0	3	29;3	y	0.08	2	24.5	2	41;8	y	0.0191200084000888	-3.59202656828379	down	ENSMUSG00000070427.5	Il18bp	chr7	protein_coding	interleukin 18 binding protein
known_NIR_16338	chr7	101825612	101829635	-	101825612	101829584	A5SS	ENSMUST00000210682.2	known	0.67	10	5	10	5	y	0.80	12	3	12	3	y	0.59	13	9	13	9	y	0.71	15	6	15	6	y	0.82	9	2	9	2	y	0.92	12	1	12	1	n	1.00	5	0	5	0	n	0.89	16	2	16	2	y	0.0100011778228473	-3.7450346393676	down	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
known_NIR_16345	chr7	101859798;101872357	101871989;101872586	+	101859798	101872586	cassetteExon	ENSMUST00000120879.8	known	0.62	31.5	19	39;24	19	y	0.59	13.0	9	14;12	9	y	0.65	24.0	13	19;29	13	y	0.47	8.0	9	9;7	9	y	0.69	15.5	7	11;20	7	y	0.69	24.0	11	21;27	11	y	0.74	11.5	4	6;17	4	y	0.90	27.5	3	20;35	3	y	0.0366109476783262	-2.71687234680564	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16348	chr7	101872357	101872586	+	101872008	101872586	A5SS	ENSMUST00000147536.8	known	0.36	24	42	24	42	y	0.41	12	17	12	17	y	0.58	29	21	29	21	y	0.37	7	12	7	12	y	0.62	20	12	20	12	y	0.56	27	21	27	21	y	0.71	17	7	17	7	y	0.62	35	21	35	21	y	0.0218031670074638	-3.30411881841146	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16351	chr7	101872504	101872586	+	101859798	101872586	A5SS	ENSMUST00000120879.8	known	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.38	8	13	8	13	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.45	9	11	9	11	y	0.50	4	4	4	4	n	0.73	8	3	8	3	y	0.043135962001193	-2.55884782530023	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16452	chr7	114152588	114161968	-	114152588	114153826	5pMXE	ENSMUST00000128587.8	known	0.06	5	78	5	78	y	0.05	1	18	1	18	n	0.05	3	62	3	62	y	0.10	4	37	4	37	y	0.11	7	54	7	54	y	0.11	7	57	7	57	y	0.13	6	41	6	41	y	0.12	6	43	6	43	y	0.0153663950030433	-4.09228975550827	down	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16505	chr7	119433624	119443071	+	119433624;119442557	119442465;119443071	ES	ENSMUST00000106520.9	known	0.15	2	11.5	2	13;10	y	-	-	-	-	-	-	0.14	1	6.0	1	2;10	n	0.00	0	3.0	0	0;6	n	0.57	4	3.0	4	2;4	y	0.14	1	6.0	1	3;9	n	0.40	2	3.0	2	4;2	n	0.40	1	1.5	1	2;1	n	0.0442039148974763	-2.77830092417718	down	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16722	chr7	128050443	128056660	-	128050494	128056660	A3SS	ENSMUST00000106226.9	known	0.84	107	21	107	21	y	0.84	49	9	49	9	y	0.80	69	17	69	17	y	0.79	34	9	34	9	y	0.86	74	12	74	12	y	0.86	101	17	101	17	y	0.87	61	9	61	9	y	0.87	111	17	111	17	y	0.0334009147236029	-3.52821142536399	down	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16755	chr7	130510155	130512562	+	130510155	130511318	3pMXE	ENSMUST00000136963.8	known	0.24	4	13	4	13	y	0.05	1	18	1	18	n	0.14	2	12	2	12	y	0.10	1	9	1	9	n	0.75	6	2	6	2	n	0.43	3	4	3	4	n	0.33	2	4	2	4	n	1.00	3	0	3	0	n	0.0438187576442279	-3.12674888718158	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16756	chr7	130510155	130512562	+	130510155;130511358	130511318;130512562	ES	ENSMUST00000075181.11	known	0.27	4	11.0	4	13;9	y	0.07	1	13.5	1	18;9	n	0.17	2	10.0	2	12;8	y	0.14	1	6.0	1	9;3	n	0.75	6	2.0	6	2;2	y	0.50	3	3.0	3	4;2	n	0.40	2	3.0	2	4;2	n	1.00	3	0.0	3	0;0	n	0.0286734373396438	-3.55371921053431	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16757	chr7	130510155	130512562	+	130510155;130511465	130511318;130512562	ES	ENSMUST00000120441.8	known	0.35	4	7.5	4	13;2	y	0.10	1	9.0	1	18;0	n	0.25	2	6.0	2	12;0	n	0.18	1	4.5	1	9;0	n	0.86	6	1.0	6	2;0	n	0.60	3	2.0	3	4;0	n	0.50	2	2.0	2	4;0	n	1.00	3	0.0	3	0;0	n	0.0133153564214091	-4.10029696889879	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16940	chr7	141035386;141036562	141036481;141037186	+	141035386	141037186	cassetteExon	ENSMUST00000164016.8	known	0.02	3.5	141	3;4	141	y	0.02	1.5	88	2;1	88	n	0.03	6.0	208	5;7	208	y	0.01	0.5	81	1;0	81	n	0.04	3.5	75	3;4	75	y	0.04	6.0	134	5;7	134	y	0.05	5.0	89	4;6	89	y	0.03	3.5	129	5;2	129	y	0.013399964712331	-3.46410161513775	down	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
known_NIR_17030	chr7	143068374	143074121	-	143068374;143072622	143072587;143074121	ES	ENSMUST00000072727.7	known	0.80	133	32.5	133	30;35	y	0.72	63	24.5	63	23;26	y	0.76	103	32.0	103	30;34	y	0.76	58	18.0	58	17;19	y	0.84	60	11.5	60	12;11	y	0.88	99	14.0	99	12;16	y	0.86	70	11.0	70	7;15	y	0.79	97	25.5	97	24;27	y	0.0178879030523341	-3.26216091127874	down	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
known_NIR_17123	chr7	19407538	19415230	-	19407538;19410809	19410647;19415230	ES	ENSMUST00000127648.4	known	0.01	6	858.0	6	1675;41	y	0.00	2	542.0	2	1073;11	y	0.01	5	843.0	5	1644;42	y	0.00	2	596.0	2	1178;14	y	0.02	9	398.0	9	759;37	y	0.02	15	661.5	15	1264;59	y	0.02	10	508.0	10	951;65	y	0.02	12	605.5	12	1164;47	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
known_NIR_17151	chr7	24584279	24584561	+	24584092	24584561	A5SS	ENSMUST00000108430.10	known	0.01	9	741	9	741	y	0.01	3	391	3	391	y	0.01	8	665	8	665	y	0.01	3	365	3	365	y	0.02	11	469	11	469	y	0.04	23	611	23	611	y	0.03	17	628	17	628	y	0.02	13	562	13	562	y	0.0353528470025174	-3.65563077506965	down	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17152	chr7	24584294	24584561	+	24584092	24584561	A5SS	ENSMUST00000108430.10	known	0.02	16	741	16	741	y	0.01	3	391	3	391	y	0.02	17	665	17	665	y	0.02	7	365	7	365	y	0.04	20	469	20	469	y	0.07	47	611	47	611	y	0.06	41	628	41	628	y	0.04	23	562	23	562	y	0.0139678395227001	-4.42718872423573	down	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17188	chr7	25415612;25416424	25416279;25417570	-	25415612	25417570	cassetteExon	ENSMUST00000156365.8	known	0.60	3.0	2	6;0	2	n	0.64	3.5	2	7;0	2	n	0.60	3.0	2	6;0	2	n	0.33	1.0	2	2;0	2	n	0.83	5.0	1	10;0	1	n	1.00	4.0	0	7;1	0	n	1.00	4.5	0	8;1	0	n	0.60	4.5	3	8;1	3	n	0.040536965049787	-2.6547405208248	down	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17203	chr7	26875663	26879594	-	26875663	26878152	5pMXE	ENSMUST00000093040.13	known	0.02	3	119	3	119	y	0.00	0	42	0	42	n	0.00	0	86	0	86	n	0.00	0	62	0	62	n	0.05	3	58	3	58	y	0.02	2	104	2	104	y	0.03	2	58	2	58	y	0.03	2	76	2	76	y	0.015254323057086	-3.4219405926104	down	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
known_NIR_17247	chr7	28508284	28512704	+	28508284;28510593	28510097;28512704	ES	ENSMUST00000174548.8	known	0.17	5	24.5	5	4;45	y	0.06	1	15.5	1	0;31	n	0.10	2	17.5	2	5;30	y	0.18	3	14.0	3	0;28	n	0.26	7	19.5	7	2;37	y	0.30	14	32.5	14	2;63	y	0.21	5	18.5	5	3;34	y	0.24	8	26.0	8	2;50	y	0.013971697494753	-3.64017628587218	down	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17248	chr7	28508284	28512704	+	28510593	28512704	5pMXE	ENSMUST00000038572.15	known	0.10	5	45	5	45	y	0.03	1	31	1	31	n	0.06	2	30	2	30	y	0.10	3	28	3	28	y	0.16	7	37	7	37	y	0.18	14	63	14	63	y	0.13	5	34	5	34	y	0.14	8	50	8	50	y	0.0103160885020761	-3.93892771133865	down	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17268	chr7	28937988	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.15	4	23	4	23	y	0.00	0	16	0	16	n	0.10	4	35	4	35	y	0.23	3	10	3	10	y	0.35	7	13	7	13	y	0.19	6	26	6	26	y	0.48	12	13	12	13	y	0.26	11	31	11	31	y	0.0470428996638766	-2.53320198552449	down	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17270	chr7	28937988	28943495	+	28938036	28943495	A5SS	ENSMUST00000108237.2	known	0.04	4	97	4	97	y	0.00	0	47	0	47	n	0.08	4	46	4	46	y	0.06	3	45	3	45	y	0.09	7	67	7	67	y	0.08	6	67	6	67	y	0.17	12	57	12	57	y	0.11	11	88	11	88	y	0.0442253782828032	-2.55506520639987	down	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17519	chr7	44118393;44119596	44119407;44119836	+	44118393	44119836	cassetteExon	ENSMUST00000035844.11	known	0.21	27.0	102	0;54	102	n	0.09	4.5	45	0;9	45	n	0.17	22.0	110	0;44	110	n	0.12	6.0	42	0;12	42	n	0.25	14.0	41	0;28	41	n	0.30	28.5	68	5;52	68	y	0.28	30.0	77	2;58	77	y	0.21	21.0	77	0;42	77	n	0.0163627715602537	-3.4081782195611	down	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17542	chr7	4434633;4438097	4437993;4445593	-	4434633	4445593	cassetteExon	ENSMUST00000119485.8	known	0.88	22.0	3	20;24	3	y	0.82	13.5	3	16;11	3	y	0.90	18.0	2	17;19	2	y	0.90	18.5	2	11;26	2	y	1.00	6.0	0	6;6	0	n	1.00	10.5	0	10;11	0	n	0.89	8.5	1	7;10	1	n	0.94	16.0	1	15;17	1	n	0.0489362521676219	-2.52850674898204	down	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17558	chr7	44494752	44495299	-	44494792	44495299	A3SS	ENSMUST00000047085.16	known	0.04	3	70	3	70	y	0.00	0	22	0	22	n	0.00	0	69	0	69	n	0.00	0	51	0	51	n	0.05	3	61	3	61	y	0.03	2	73	2	73	y	0.08	4	44	4	44	y	0.06	5	85	5	85	y	0.0206890176697124	-3.11769145362398	down	ENSMUSG00000038520.16	Tbc1d17	chr7	protein_coding	TBC1 domain family, member 17
known_NIR_17566	chr7	44499720	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.10	3	28	3	28	y	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.08	1	11	1	11	n	0.20	3	12	3	12	y	0.19	5	21	5	21	y	0.27	6	16	6	16	y	0.13	3	20	3	20	y	0.00793180450977392	-3.91853072989806	down	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17567	chr7	44499720	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	known	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.43	3	4	3	4	n	0.45	5	6	5	6	y	0.60	6	4	6	4	y	0.25	3	9	3	9	y	0.0196303363480215	-3.15856606539151	down	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17568	chr7	44499720	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	known	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.28	5	13	5	13	y	0.35	6	11	6	11	y	0.19	3	13	3	13	y	0.00883722846366908	-3.89960210171809	down	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17584	chr7	44509369	44509784	+	44509369;44509608	44509501;44509784	ES	ENSMUST00000107876.8	known	0.08	7	82.0	7	82;82	y	0.05	2	37.0	2	37;37	y	0.12	10	74.5	10	82;67	y	0.05	2	37.0	2	32;42	y	0.20	11	44.0	11	52;36	y	0.14	11	68.5	11	79;58	y	0.13	8	54.0	8	56;52	y	0.13	10	66.5	10	62;71	y	0.0192256919124692	-3.17405527136369	down	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
known_NIR_17613	chr7	44636794	44640801	+	44636794	44641447	A3SS	ENSMUST00000152595.2	known	0.83	5	1	5	1	n	0.50	1	1	1	1	n	0.78	7	2	7	2	n	0.40	2	3	2	3	n	0.88	7	1	7	1	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	0.92	11	1	11	1	n	0.049633253058748	-2.95351012971318	down	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
known_NIR_17697	chr7	45030242	45031249	-	45030242	45033228	A5SS	ENSMUST00000074575.11	known	0.04	7	181	7	181	y	0.03	3	101	3	101	y	0.04	5	134	5	134	y	0.02	2	91	2	91	y	0.04	4	97	4	97	y	0.07	8	101	8	101	y	0.05	6	104	6	104	y	0.05	8	144	8	144	y	0.0474548010379003	-2.5298221281347	down	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17701	chr7	45030242;45032608	45032549;45033228	-	45030242	45033228	cassetteExon	ENSMUST00000074575.11	known	0.20	45.5	181	9;82	181	y	0.23	30.0	101	3;57	101	y	0.16	25.0	134	1;49	134	n	0.19	21.0	91	0;42	91	n	0.25	31.5	97	1;62	97	n	0.31	46.0	101	3;89	101	y	0.23	31.0	104	4;58	104	y	0.25	47.5	144	5;90	144	y	0.0289822246347439	-2.88296295672283	down	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17720	chr7	45159271	45159656	-	45159271	45159747	A5SS	ENSMUST00000211765.2	known	0.01	1	179	1	179	n	0.00	0	67	0	67	n	0.02	2	123	2	123	y	0.00	0	85	0	85	n	0.02	2	95	2	95	y	0.04	7	152	7	152	y	0.03	3	99	3	99	y	0.02	3	135	3	135	y	0.0254739283431625	-2.95419578350399	down	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
known_NIR_17863	chr7	55594457	55594707	-	55594457	55611948	A5SS	ENSMUST00000117812.8	known	0.14	2	12	2	12	y	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.38	5	8	5	8	y	0.17	2	10	2	10	y	0.33	5	10	5	10	y	0.25	3	9	3	9	y	0.0253241363885576	-3.00119094883612	down	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17959	chr7	67919982	67924906	-	67919982	67924654	5pMXE	ENSMUST00000135564.8	known	0.23	16	55	16	55	y	0.06	3	45	3	45	y	0.12	11	82	11	82	y	0.16	5	27	5	27	y	0.23	23	77	23	77	y	0.32	40	85	40	85	y	0.25	28	83	28	83	y	0.30	34	78	34	78	y	0.0249913575747421	-3.19990127429724	down	ENSMUSG00000086628.8	Gm16157	chr7	lncRNA	predicted gene 16157
known_NIR_17984	chr7	73169456	73187057	-	73169456	73190520	A5SS	ENSMUST00000169922.9	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.38	3	5	3	5	n	0.60	3	2	3	2	n	0.36	4	7	4	7	y	-	-	-	-	-	-	0.43	3	4	3	4	n	0.0405762576138778	-2.74628322136325	down	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_18004	chr7	78545762	78552092	+	78545762	78551978	A3SS	ENSMUST00000107425.8	known	0.43	6	8	6	8	y	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.33	3	6	3	6	n	0.65	11	6	11	6	y	0.46	6	7	6	7	y	0.45	5	6	5	6	y	0.56	5	4	5	4	n	0.0188956495501467	-3.20942817095964	down	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18035	chr7	79988907	79989062	-	79988764	79989062	A3SS	ENSMUST00000154428.9	known	0.15	4	22	4	22	y	0.12	1	7	1	7	n	0.26	5	14	5	14	y	0.05	1	20	1	20	n	0.20	2	8	2	8	y	0.28	8	21	8	21	y	0.43	6	8	6	8	y	0.33	4	8	4	8	y	0.0445321158557757	-2.53846153846154	down	ENSMUSG00000030533.17	Unc45a	chr7	protein_coding	unc-45 myosin chaperone A
known_NIR_18252	chr8	106615150	106615228	+	106615150	106615231	A3SS	ENSMUST00000040254.16	known	0.35	7	13	7	13	y	0.33	5	10	5	10	y	0.33	7	14	7	14	y	0.27	3	8	3	8	y	0.64	7	4	7	4	y	0.42	8	11	8	11	y	0.47	9	10	9	10	y	0.44	7	9	7	9	y	0.035187023427064	-3.24668437172357	down	ENSMUSG00000036270.17	Edc4	chr8	protein_coding	enhancer of mRNA decapping 4
known_NIR_18260	chr8	106860518	106860592	-	106860521	106860592	A3SS	ENSMUST00000115979.9	known	0.17	44	214	44	214	y	0.17	14	67	14	67	y	0.14	22	135	22	135	y	0.12	12	88	12	88	y	0.19	26	108	26	108	y	0.18	29	132	29	132	y	0.20	25	103	25	103	y	0.20	36	148	36	148	y	0.0331510872482323	-3.23199367767483	down	ENSMUSG00000084128.11	Esrp2	chr8	protein_coding	epithelial splicing regulatory protein 2
known_NIR_18317	chr8	112264196;112333480	112333379;112335925	+	112264196	112335925	cassetteExon	ENSMUST00000172856.8	known	0.12	25.5	183	20;31	183	y	0.09	11.5	117	9;14	117	y	0.10	16.5	152	12;21	152	y	0.06	9.5	144	10;9	144	y	0.13	13.5	90	12;15	90	y	0.14	20.5	127	17;24	127	y	0.16	17.5	90	10;25	90	y	0.18	34.0	151	24;44	151	y	0.0117704499042859	-3.59103360998748	down	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18346	chr8	11560347	11562895	+	11560347;11561997	11561877;11562895	ES	ENSMUST00000177955.8	known	0.01	3	238.0	3	226;250	y	0.00	0	100.5	0	117;84	n	0.02	6	239.5	6	246;233	y	0.00	0	108.0	0	108;108	n	0.03	6	178.5	6	180;177	y	0.04	10	261.5	10	265;258	y	0.02	5	224.0	5	223;225	y	0.02	4	203.0	4	173;233	y	0.0254739283431625	-2.95419578350399	down	ENSMUSG00000031505.12	Naxd	chr8	protein_coding	NAD(P)HX dehydratase
known_NIR_18544	chr8	128174287	128186755	+	128153234	128186755	A5SS	ENSMUST00000162309.8	known	0.06	2	34	2	34	y	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.07	2	26	2	26	y	0.0377034278487186	-3.05958028471629	down	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18692	chr8	3565556	3566507	+	3565556	3566510	A3SS	ENSMUST00000111070.4	known	0.60	6	4	6	4	y	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.60	6	4	6	4	y	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.67	4	2	4	2	n	0.73	11	4	11	4	y	0.0466337838128569	-3.02307340461122	down	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18735	chr8	41714218	41720224	+	41714218;41714513	41714397;41720224	ES	ENSMUST00000211090.2	known	0.15	3	17.5	3	17;18	y	0.00	0	7.0	0	8;6	n	0.00	0	11.0	0	8;14	n	0.15	1	5.5	1	6;5	n	0.57	4	3.0	4	4;2	y	0.18	2	9.0	2	9;9	y	0.46	3	3.5	3	4;3	y	0.33	3	6.0	3	4;8	y	0.0258435356476311	-3.27680182000648	down	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
known_NIR_18953	chr8	71232581	71232917	-	71232581	71232839	A5SS	ENSMUST00000212140.2	known	0.56	22	17	22	17	y	0.62	8	5	8	5	y	0.61	20	13	20	13	y	0.47	8	9	8	9	y	0.82	14	3	14	3	y	0.82	23	5	23	5	y	0.73	19	7	19	7	y	0.70	21	9	21	9	y	0.00475260531922505	-4.38639592469845	down	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_19068	chr8	84977771	84980492	-	84978340	84980492	A3SS	ENSMUST00000126435.8	known	0.03	3	96	3	96	y	0.00	0	60	0	60	n	0.03	3	88	3	88	y	0.00	0	53	0	53	n	0.06	4	65	4	65	y	0.05	6	127	6	127	y	0.07	8	99	8	99	y	0.04	3	76	3	76	y	0.0115740023013006	-3.70328039909021	down	ENSMUSG00000004996.10	Mri1	chr8	protein_coding	methylthioribose-1-phosphate isomerase 1
known_NIR_19157	chr8	94002074;94003257	94003184;94006277	-	94002074	94006277	cassetteExon	ENSMUST00000034178.9	known	0.01	1.5	127	1;2	127	n	0.00	0.0	3	0;0	3	n	0.02	10.5	470	13;8	470	y	0.00	0.0	5	0;0	5	n	0.03	17.5	611	18;17	611	y	0.02	27.5	1082	29;26	1082	y	0.04	27.0	732	33;21	732	y	0.02	15.5	912	16;15	912	y	0.0254739283431625	-2.95419578350399	down	ENSMUSG00000031725.9	Ces1f	chr8	protein_coding	carboxylesterase 1F
known_NIR_19263	chr9	103241250	103241662	-	103241250	103242253	A5SS	ENSMUST00000035484.11	known	0.10	21	196	21	196	y	0.05	5	96	5	96	y	0.09	12	127	12	127	y	0.08	10	119	10	119	y	0.11	10	83	10	83	y	0.17	34	169	34	169	y	0.13	15	97	15	97	y	0.11	18	146	18	146	y	0.0330769882889104	-2.80975743474508	down	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19265	chr9	103926878	103927034	-	103926800	103927034	A3SS	ENSMUST00000035166.12	known	0.01	2	164	2	164	y	0.02	3	193	3	193	y	0.02	2	119	2	119	y	0.02	3	142	3	142	y	0.05	3	60	3	60	y	0.03	4	120	4	120	y	0.03	3	101	3	101	y	0.03	3	97	3	97	y	0.0307597787889486	-3.13049516849971	down	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
known_NIR_19315	chr9	106325908	106327203	+	106325493	106327203	A5SS	ENSMUST00000190167.7	known	0.98	288	5	288	5	y	0.97	64	2	64	2	y	0.98	315	7	315	7	y	0.97	133	4	133	4	y	1.00	262	0	262	0	n	0.99	365	5	365	5	y	0.98	287	6	287	6	y	0.99	413	5	413	5	y	0.0273393097919095	-3	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19316	chr9	106325908	106327203	+	106325527	106327203	A5SS	ENSMUST00000187106.7	known	0.88	288	41	288	41	y	0.89	64	8	64	8	y	0.85	315	55	315	55	y	0.90	133	15	133	15	y	0.93	262	21	262	21	y	0.91	365	37	365	37	y	0.90	287	31	287	31	y	0.93	413	30	413	30	y	0.0331203230481182	-2.85175912736015	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19319	chr9	106326001	106327203	+	106325493	106327203	A5SS	ENSMUST00000190167.7	known	0.58	7	5	7	5	y	0.00	0	2	0	2	n	0.53	8	7	8	7	y	0.50	4	4	4	4	n	1.00	16	0	16	0	n	0.74	14	5	14	5	y	0.74	17	6	17	6	y	0.81	21	5	21	5	y	0.0449568333502058	-2.82869439874865	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19320	chr9	106326001	106327203	+	106325527	106327203	A5SS	ENSMUST00000187106.7	known	0.15	7	41	7	41	y	0.00	0	8	0	8	n	0.13	8	55	8	55	y	0.21	4	15	4	15	y	0.43	16	21	16	21	y	0.27	14	37	14	37	y	0.35	17	31	17	31	y	0.41	21	30	21	30	y	0.00586922275228339	-4.25509542490508	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19321	chr9	106326001	106327203	+	106325908	106327203	A5SS	ENSMUST00000048527.15	known	0.02	7	288	7	288	y	0.00	0	64	0	64	n	0.02	8	315	8	315	y	0.03	4	133	4	133	y	0.06	16	262	16	262	y	0.04	14	365	14	365	y	0.06	17	287	17	287	y	0.05	21	413	21	413	y	0.00523040489544888	-4.42718872423573	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19331	chr9	106353181	106353524	-	106353181	106353281	A5SS	ENSMUST00000123555.8	known	0.17	5	24	5	24	y	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.08	2	23	2	23	y	0.35	6	11	6	11	y	0.39	13	20	13	20	y	0.18	4	18	4	18	y	0.28	8	21	8	21	y	0.0164748910840972	-3.33333333333333	down	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19332	chr9	106353181	106353524	-	106353181	106353692	A5SS	ENSMUST00000067218.14	known	0.10	5	44	5	44	y	0.00	0	47	0	47	n	0.04	2	47	2	47	y	0.04	2	48	2	48	y	0.18	6	27	6	27	y	0.23	13	44	13	44	y	0.13	4	27	4	27	y	0.18	8	36	8	36	y	0.00349244494541196	-4.65332841593355	down	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19343	chr9	106746560	106747402	-	106715656	106747402	A3SS	ENSMUST00000159620.9	known	0.88	15	2	15	2	y	0.94	15	1	15	1	n	0.93	14	1	14	1	n	0.91	10	1	10	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.0076408389421475	-6.42539604115686	down	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
known_NIR_19370	chr9	107458134	107460016	+	107456169	107460016	A5SS	ENSMUST00000127380.8	known	0.90	61	7	61	7	y	0.94	30	2	30	2	y	0.91	70	7	70	7	y	0.95	39	2	39	2	y	1.00	54	0	54	0	n	1.00	70	0	70	0	n	1.00	49	0	49	0	n	1.00	58	0	58	0	n	0.00807513762155935	-6.30126037812605	down	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19385	chr9	107536443	107544503	-	107536443	107544335	A5SS	ENSMUST00000010208.14	known	0.84	1641	306	1641	306	y	0.81	640	147	640	147	y	0.85	1104	200	1104	200	y	0.82	895	199	895	199	y	0.86	1087	182	1087	182	y	0.85	1677	295	1677	295	y	0.88	1010	140	1010	140	y	0.86	2124	341	2124	341	y	0.0302082193128718	-2.93141950921104	down	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19694	chr9	121961816	121965972	+	121961816	121963027	3pMXE	ENSMUST00000215432.2	known	0.74	25	9	25	9	y	0.67	10	5	10	5	y	0.73	22	8	22	8	y	0.47	7	8	7	8	y	0.86	18	3	18	3	y	0.72	39	15	39	15	y	1.00	30	0	30	0	n	0.90	19	2	19	2	y	0.0440468664810081	-2.54455590549744	down	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19695	chr9	121961816	121965972	+	121963142	121965972	A5SS&ES	ENSMUST00000146832.8	known	0.71	25	10	25	10	y	0.67	10	5	10	5	y	0.67	22	11	22	11	y	0.64	7	4	7	4	y	0.82	18	4	18	4	y	0.76	39	12	39	12	y	1.00	30	0	30	0	n	0.83	19	4	19	4	y	0.0351225119694658	-3.36433905731518	down	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19749	chr9	13693678	13697148	+	13693678	13694902	3pMXE	ENSMUST00000136735.8	known	0.51	22	21	22	21	y	0.52	15	14	15	14	y	0.60	26	17	26	17	y	0.57	20	15	20	15	y	0.62	13	8	13	8	y	0.75	30	10	30	10	y	0.81	21	5	21	5	y	0.67	34	17	34	17	y	0.0222049503057608	-3.44660706799631	down	ENSMUSG00000031918.17	Mtmr2	chr9	protein_coding	myotubularin related protein 2
known_NIR_19807	chr9	21177013	21177889	+	21177013	21178035	A3SS	ENSMUST00000065005.5	known	0.02	3	120	3	120	y	0.00	0	37	0	37	n	0.00	0	119	0	119	n	0.00	0	59	0	59	n	0.03	2	57	2	57	y	0.03	3	117	3	117	y	0.02	2	86	2	86	y	0.06	5	72	5	72	y	0.0316858628534036	-3	down	ENSMUSG00000002820.7	Atg4d	chr9	protein_coding	autophagy related 4D, cysteine peptidase
known_NIR_19871	chr9	22041425	22043033	-	22041425	22041819	5pMXE	ENSMUST00000115315.3	known	0.83	201	42	201	42	y	0.71	65	27	65	27	y	0.82	167	37	167	37	y	0.77	91	27	91	27	y	0.99	209	3	209	3	y	0.96	296	12	296	12	y	0.92	218	19	218	19	y	0.97	238	7	238	7	y	0.0030783226774305	-5.69063244679707	down	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19896	chr9	26985760	26993702	+	26984098	26993702	A5SS	ENSMUST00000073127.14	known	0.53	10	9	10	9	y	0.50	3	3	3	3	n	0.72	21	8	21	8	y	0.54	7	6	7	6	y	0.94	15	1	15	1	n	0.82	14	3	14	3	y	0.80	12	3	12	3	y	0.68	17	8	17	8	y	0.0174544905191382	-3.25528322647049	down	ENSMUSG00000035024.17	Ncapd3	chr9	protein_coding	non-SMC condensin II complex, subunit D3
known_NIR_19941	chr9	37401129;37402865	37402680;37424910	+	37401129	37424910	cassetteExon	ENSMUST00000211792.2	known	0.10	1.0	9	0;2	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.33	1.0	2	0;2	2	n	0.38	2.5	4	0;5	4	n	0.17	1.0	5	0;2	5	n	0.38	5.0	8	2;8	8	y	0.00489224887106774	-5.20855375877647	down	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_20032	chr9	45809789	45816104	-	45809789	45811044	A5SS&ES	ENSMUST00000162699.8	known	0.07	4	51	4	51	y	0.11	3	24	3	24	y	0.20	8	32	8	32	y	0.18	7	32	7	32	y	0.17	5	24	5	24	y	0.25	7	21	7	21	y	0.37	7	12	7	12	y	0.29	12	29	12	29	y	0.0486686779572311	-2.52534324212889	down	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20324	chr9	69922692;69923219	69923050;69924101	+	69922692	69924101	cassetteExon	ENSMUST00000118198.8	known	0.07	26.0	328	28;24	328	y	0.03	10.0	287	6;14	287	y	0.07	27.0	336	28;26	336	y	0.04	13.0	291	8;18	291	y	0.11	16.0	136	14;18	136	y	0.07	16.0	216	12;20	216	y	0.09	15.5	164	16;15	164	y	0.08	19.0	211	16;22	211	y	0.0411459742270664	-2.6148057867317	down	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20325	chr9	69924205	69924355	+	69924205	69929719	A3SS	ENSMUST00000119905.8	known	0.70	7	3	7	3	y	0.55	6	5	6	5	y	0.62	10	6	10	6	y	0.22	2	7	2	7	n	1.00	6	0	6	0	n	0.94	15	1	15	1	n	0.80	12	3	12	3	y	0.80	12	3	12	3	y	0.0326990547475472	-3.10105746513073	down	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20389	chr9	75306033	75317137	-	75306033	75317145	A5SS	ENSMUST00000049355.11	known	0.00	0	19	0	19	n	0.04	1	23	1	23	n	0.04	1	22	1	22	n	0.05	1	20	1	20	n	0.13	2	13	2	13	y	0.05	1	18	1	18	n	0.12	2	14	2	14	y	0.14	4	24	4	24	y	0.0231960421696268	-3.33635641550391	down	ENSMUSG00000042688.17	Mapk6	chr9	protein_coding	mitogen-activated protein kinase 6
known_NIR_20413	chr9	7938539;7950540	7950493;7952954	-	7938539	7952954	cassetteExon	ENSMUST00000086580.12	known	0.55	76.0	62	81;71	62	y	0.44	27.5	35	30;25	35	y	0.52	51.0	48	45;57	48	y	0.57	45.0	34	49;41	34	y	0.71	45.0	18	44;46	18	y	0.67	68.0	34	68;68	34	y	0.58	44.0	32	46;42	32	y	0.65	65.5	36	66;65	36	y	0.0153100786991235	-3.35873852777973	down	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
known_NIR_20415	chr9	79665861	79666432	-	79665861	79666922	A5SS	ENSMUST00000034881.8	known	0.00	2	1278	2	1278	y	0.00	3	721	3	721	y	0.01	8	1471	8	1471	y	0.00	2	656	2	656	y	0.01	13	1063	13	1063	y	0.01	16	1513	16	1513	y	0.02	19	1237	19	1237	y	0.02	24	1440	24	1440	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
known_NIR_20543	chrX	104087717	104110365	-	104091616	104110365	A3SS&ES	ENSMUST00000127533.8	known	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.26	5	14	5	14	y	0.21	3	11	3	11	y	0.23	3	10	3	10	y	0.00813436358374597	-5.24133302761373	down	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20823	chrX	59271153	59281917	-	59271153;59274612	59274508;59281917	ES	ENSMUST00000154051.8	known	0.20	90	364.5	90	401;328	y	0.12	17	121.0	17	124;118	y	0.17	59	279.5	59	314;245	y	0.18	37	167.5	37	188;147	y	0.21	60	221.0	60	229;213	y	0.28	115	293.5	115	328;259	y	0.23	48	165.0	48	163;167	y	0.25	92	282.5	92	317;248	y	0.0165504218501075	-3.31294578224539	down	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
known_NIR_20830	chrX	69510962	69513724	-	69510809	69513724	A3SS	ENSMUST00000154400.8	known	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.45	5	6	5	6	y	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.50	4	4	4	4	n	0.38	3	5	3	5	n	0.75	3	1	3	1	n	0.0481059988208225	-2.49444772309702	down	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20907	chrX	73332119	73332711	+	73332119	73332268	3pMXE	ENSMUST00000134936.9	known	0.56	45	35	45	35	y	0.50	14	14	14	14	y	0.52	51	47	51	47	y	0.53	25	22	25	22	y	0.75	38	13	38	13	y	0.58	37	27	37	27	y	0.76	50	16	50	16	y	0.65	46	25	46	25	y	0.0302323229401419	-3.52364277334701	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20908	chrX	73332119	73332711	+	73332119;73332320	73332268;73332711	ES	ENSMUST00000069722.13	known	0.58	45	32.0	45	35;29	y	0.55	14	11.5	14	14;9	y	0.51	51	49.5	51	47;52	y	0.55	25	20.5	25	22;19	y	0.70	38	16.5	38	13;20	y	0.56	37	28.5	37	27;30	y	0.73	50	18.5	50	16;21	y	0.67	46	23.0	46	25;21	y	0.04337940925985	-2.95486468327108	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_21002	chrX	8007447	8009490	-	8009194	8009490	3pMXE	ENSMUST00000115621.9	known	0.00	0	278	0	278	n	0.00	0	482	0	482	n	0.01	3	208	3	208	y	0.00	0	251	0	251	n	0.03	3	105	3	105	y	0.02	3	157	3	157	y	0.01	2	151	2	151	y	0.03	6	167	6	167	y	0.0166979601915548	-3.70328039909021	down	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21029	chrX	93410932	93423532	+	93410768	93423532	A5SS	ENSMUST00000113898.8	known	0.07	3	38	3	38	y	0.00	0	16	0	16	n	0.02	1	41	1	41	n	0.07	1	14	1	14	n	0.07	2	25	2	25	y	0.16	4	21	4	21	y	0.17	5	24	5	24	y	0.27	8	22	8	22	y	0.0447301955236603	-2.85844024395688	down	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
known_NIR_21030	chrX	93411091	93423532	+	93410768	93423532	A5SS	ENSMUST00000113898.8	known	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.00	0	14	0	14	n	0.04	1	25	1	25	n	0.09	2	21	2	21	y	0.04	1	24	1	24	n	0.08	2	22	2	22	y	0.0176754295354474	-4.75293187893358	down	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
novel_NIR_35	chr1	120047742	120048686	-	120047742	120048492	5pMXE	ENSMUST00000151708.3	novel	0.60	12	8	12	8	y	0.50	8	8	8	8	y	0.50	9	9	9	9	y	0.43	3	4	3	4	y	0.63	12	7	12	7	y	0.61	17	11	17	11	y	0.65	17	9	17	9	y	0.77	10	3	10	3	y	0.0200661904840811	-3.14085250091074	down	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_101	chr1	130642313	130645380	-	130642313	130646559	A5SS	ENSMUST00000189534.7	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0208093606917607	-6.8235294117647	down	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_600	chr1	176589066	176597279	-	176589066	176596799	A5SS	ENSMUST00000195433.6	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.0225728977775494	-3.79473319220206	down	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
novel_NIR_933	chr1	58154575	58158640	+	58158212	58158640	A5SS&ES	ENSMUST00000159014.2	novel	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.50	6	6	6	6	y	0.16	3	16	3	16	y	0.52	11	10	11	10	n	0.19	3	13	3	13	y	0.0489130315385221	-2.68063924683154	down	ENSMUSG00000064294.13	Aox3	chr1	protein_coding	aldehyde oxidase 3
novel_NIR_970	chr1	60490296	60532697	-	60529480	60532697	3pMXE	ENSMUST00000140485.8	novel	0.14	6	38	6	38	n	0.03	1	38	1	38	n	0.00	0	15	0	15	n	0.26	9	25	9	25	y	0.36	5	9	5	9	y	0.25	8	24	8	24	y	0.44	7	9	7	9	y	0.26	8	23	8	23	y	0.0273361458762758	-2.96311413068648	down	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_1064	chr1	72903239	72909763	-	72903239	72912965	A5SS	ENSMUST00000027377.9	novel	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.26	5	14	5	14	y	0.67	2	1	2	1	y	0.30	3	7	3	7	y	0.0488404267868078	-2.80874454808474	down	ENSMUSG00000026185.9	Igfbp5	chr1	protein_coding	insulin-like growth factor binding protein 5
novel_NIR_1082	chr1	74325169	74326300	+	74325169	74386544	A3SS	ENSMUST00000027370.13	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.83	5	1	5	1	y	-	-	-	-	-	-	0.92	12	1	12	1	y	0.0028571298870537	-18.6682164158086	down	ENSMUSG00000026179.15	Pnkd	chr1	protein_coding	paroxysmal nonkinesiogenic dyskinesia
novel_NIR_1232	chr1	87895320	87901799	-	87895320;87896171	87896118;87901799	ES	ENSMUST00000187758.7	novel	0.09	4	41.0	4	40;42	n	0.07	1	14.0	1	11;17	n	0.06	2	31.0	2	31;31	n	0.08	1	11.0	1	16;6	n	0.14	3	18.0	3	20;16	n	0.19	8	33.5	8	36;31	y	0.09	2	20.0	2	19;21	n	0.15	4	23.5	4	26;21	y	0.0408025218001834	-3.13164092575959	down	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1547	chr10	127836540	127843314	-	127836545	127843314	A3SS	ENSMUST00000219447.2	novel	0.50	9	9	9	9	y	0.25	1	3	1	3	n	0.44	7	9	7	9	y	0.33	4	8	4	8	y	0.80	8	2	8	2	y	0.76	13	4	13	4	y	0.50	8	8	8	8	y	0.80	28	7	28	7	y	0.0116949414404759	-3.66790763972411	down	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1574	chr10	128158685	128159199	+	128158931	128159199	5pMXE	ENSMUST00000219199.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
novel_NIR_1726	chr10	40040282	40043657	+	40040282;40041225	40041066;40043657	ES	ENSMUST00000213387.2	novel	0.26	4	11.5	4	16;7	y	0.25	1	3.0	1	1;5	n	0.29	2	5.0	2	3;7	y	0.00	0	2.5	0	2;3	n	0.43	3	4.0	3	4;4	y	0.62	13	8.0	13	6;10	y	0.31	2	4.5	2	4;5	y	0.48	6	6.5	6	5;8	y	0.03130796552628	-2.79823441300328	down	ENSMUSG00000110781.2	Gm31992	chr10	lncRNA	predicted gene, 31992
novel_NIR_1840	chr10	62618071	62619013	-	62616413	62619013	A3SS	ENSMUST00000020268.7	novel	0.04	1	24	1	24	n	0.00	0	21	0	21	n	0.03	1	29	1	29	n	0.05	1	19	1	19	n	0.10	2	19	2	19	n	0.08	2	23	2	23	n	0.11	2	17	2	17	n	0.07	2	25	2	25	n	0.005768690811525	-4.24264068711928	down	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
novel_NIR_1846	chr10	62855306	62855994	-	62855306	62859499	A5SS	ENSMUST00000020263.14	novel	0.15	5	29	5	29	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.29	9	22	9	22	n	0.26	5	14	5	14	n	0.11	2	17	2	17	n	0.0450971149435978	-2.52648058091424	down	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
novel_NIR_2132	chr10	82014288	82025821	+	82014288	82028703	A3SS	ENSMUST00000156803.9	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.57	4	3	4	3	y	0.50	4	4	4	4	y	1.00	3	0	3	0	y	0.0129455178057773	-3.77581120524364	down	ENSMUSG00000112110.2	Gm15608	chr10	lncRNA	predicted gene 15608
novel_NIR_2147	chr10	83152653	83162283	-	83152653	83173090	A5SS	ENSMUST00000126617.2	novel	0.73	16	6	16	6	y	0.50	4	4	4	4	y	0.56	5	4	5	4	y	0.80	8	2	8	2	y	1.00	3	0	3	0	y	0.73	8	3	8	3	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.0266125792227731	-2.92211649035079	down	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2149	chr10	83152653	83162481	-	83152653	83158703	5pMXE	ENSMUST00000154926.2	novel	0.82	49	11	49	11	y	0.78	14	4	14	4	y	0.76	29	9	29	9	y	0.67	16	8	16	8	y	1.00	24	0	24	0	y	0.90	43	5	43	5	y	0.90	27	3	27	3	y	0.82	47	10	47	10	y	0.0236399941239526	-3.03329541213327	down	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2151	chr10	83152653	83162481	-	83152653	83173090	A5SS	ENSMUST00000126617.2	novel	0.89	49	6	49	6	y	0.78	14	4	14	4	y	0.88	29	4	29	4	y	0.89	16	2	16	2	y	1.00	24	0	24	0	y	0.93	43	3	43	3	y	1.00	27	0	27	0	y	1.00	47	0	47	0	y	0.0115016253991249	-3.83015157660847	down	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2393	chr11	102891182;102916283	102916253;102918086	-	102891182	102918086	cassetteExon	ENSMUST00000155490.3	novel	0.86	18.0	3	0;36	3	n	0.83	5.0	1	0;10	1	n	0.87	27.5	4	1;54	4	n	0.88	15.0	2	2;28	2	y	1.00	23.0	0	0;46	0	n	0.89	39.0	5	0;78	5	n	1.00	25.0	0	1;49	0	n	0.93	25.0	2	3;47	2	y	0.0325201245900367	-3.24261670673488	down	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2396	chr11	102916283	102918086	-	102891182	102918086	A3SS	ENSMUST00000155490.3	novel	0.92	36	3	36	3	n	0.91	10	1	10	1	y	0.93	54	4	54	4	n	0.93	28	2	28	2	n	1.00	46	0	46	0	y	0.94	78	5	78	5	y	1.00	49	0	49	0	n	0.96	47	2	47	2	n	0.0339084102815184	-3.33431358135726	down	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2741	chr11	120418029	120418127	-	120418029	120422259	A5SS	ENSMUST00000148579.2	novel	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.36	8	14	8	14	y	0.26	6	17	6	17	y	0.17	5	25	5	25	y	0.0062668795405259	-4.11549234758222	down	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2804	chr11	121181716	121185638	+	121181716	121187049	A3SS	ENSMUST00000153579.2	novel	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.033995244717093	-3.71196742483842	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2805	chr11	121181716	121187740	+	121181716;121187177	121187049;121187740	ES	ENSMUST00000153579.2	novel	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	2;2	n	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	0.0377495513506237	-5	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_3032	chr11	49145875	49151398	+	49136444	49151398	A5SS	ENSMUST00000081794.7	novel	0.12	4	28	4	28	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.37	10	17	10	17	y	0.22	5	18	5	18	y	0.22	4	14	4	14	y	0.00692775517352498	-4.22011987563219	down	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3283	chr11	60742784	60746526	+	60742784;60743337	60743245;60746526	ES	ENSMUST00000042281.14	novel	0.05	6	115.5	6	111;120	n	0.05	3	57.0	3	57;57	n	0.06	8	131.5	8	151;112	n	0.02	1	51.0	1	52;50	n	0.11	8	64.0	8	62;66	n	0.16	20	105.0	20	104;106	y	0.09	8	78.0	8	84;72	n	0.11	12	96.5	12	105;88	n	0.00921741906047193	-4.20039958139183	down	ENSMUSG00000042569.14	Dhrs7b	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 7B
novel_NIR_3285	chr11	60756174;60765632	60765541;60766586	-	60756174	60766586	cassetteExon	ENSMUST00000168218.8	novel	0.07	1.5	21	3;0	21	n	0.07	0.5	7	1;0	7	n	0.08	1.5	17	2;1	17	n	0.07	1.0	14	2;0	14	n	0.15	3.0	17	4;2	17	y	0.22	6.0	21	5;7	21	y	0.21	3.5	13	7;0	13	n	0.24	4.0	13	2;6	13	y	0.00588968093033207	-6.78595463644348	down	ENSMUSG00000043284.13	Tmem11	chr11	protein_coding	transmembrane protein 11
novel_NIR_3416	chr11	70329217	70329327	+	70329217	70329474	A3SS	ENSMUST00000084954.13	novel	0.13	6	40	6	40	n	0.00	0	27	0	27	n	0.03	2	56	2	56	n	0.05	1	20	1	20	n	0.16	5	27	5	27	y	0.13	7	47	7	47	n	0.14	6	37	6	37	n	0.12	6	42	6	42	n	0.0497303277693906	-2.92264810081239	down	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
novel_NIR_3437	chr11	70581378	70581645	-	70581378	70584975	A5SS	ENSMUST00000108543.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.0276049022612492	-4.02222641756122	down	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3673	chr11	8443337	8453758	-	8443337	8468199	A5SS	ENSMUST00000239091.2	novel	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.27	4	11	4	11	y	0.30	3	7	3	7	y	0.48	12	13	12	13	y	0.56	5	4	5	4	y	0.52	11	10	11	10	y	0.00447116950638705	-4.44709822520402	down	ENSMUSG00000020422.15	Tns3	chr11	protein_coding	tensin 3
novel_NIR_4002	chr12	104304804	104307003	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.96	363	14	363	14	y	0.97	264	9	264	9	y	0.96	296	12	296	12	y	0.94	267	18	267	18	y	0.97	140	5	140	5	y	0.97	197	7	197	7	y	0.98	127	3	127	3	y	0.99	217	3	217	3	y	0.0474548010379003	-2.5298221281347	down	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4320	chr12	44316084	44329558	+	44316084	44330094	A3SS	ENSMUST00000218954.2	novel	0.23	3	10	3	10	n	0.00	0	6	0	6	n	0.08	2	22	2	22	n	0.20	2	8	2	8	y	0.35	6	11	6	11	y	0.25	5	15	5	15	y	0.30	3	7	3	7	y	0.35	9	17	9	17	y	0.0324304601877044	-3.15920226176502	down	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4477	chr12	71403567	71409011	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.40	2	3	2	3	y	0.0256177901443604	-4.13811925973043	down	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_5119	chr13	4557845	4558227	-	4557845	4558167	A5SS	ENSMUST00000080361.13	novel	0.08	31	358	31	358	n	0.07	2	27	2	27	n	0.13	60	406	60	406	n	0.06	5	76	5	76	n	0.12	42	301	42	301	n	0.16	73	380	73	380	y	0.14	57	341	57	341	n	0.20	64	250	64	250	y	0.0233188628936418	-3.03108891324553	down	ENSMUSG00000054757.15	Akr1c20	chr13	protein_coding	aldo-keto reductase family 1, member C20
novel_NIR_5176	chr13	55458354	55459759	+	55458354	55459932	A3SS	ENSMUST00000224973.2	novel	0.06	3	51	3	51	n	0.12	4	30	4	30	n	0.08	3	33	3	33	n	0.00	0	25	0	25	n	0.15	3	17	3	17	y	0.12	5	36	5	36	n	0.16	5	26	5	26	y	0.27	10	27	10	27	y	0.0396644820928855	-2.66789187539966	down	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5295	chr13	64440042	64444942	-	64440042	64456636	A5SS	ENSMUST00000220895.2	novel	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.50	5	5	5	5	n	0.0338885710584359	-3.12326345944872	down	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5329	chr13	67629964	67631818	-	67629964	67632260	A5SS	ENSMUST00000019572.9	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.75	3	1	3	1	y	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.0330631436147759	-3.07649462906036	down	ENSMUSG00000059839.10	Zfp874b	chr13	protein_coding	zinc finger protein 874b
novel_NIR_5941	chr14	52149003	52149753	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.27	18	48	18	48	y	0.00	0	3	0	3	n	0.41	18	26	18	26	y	0.29	2	5	2	5	y	0.61	33	21	33	21	y	0.44	41	52	41	52	y	0.49	28	29	28	29	y	0.59	50	35	50	35	y	0.0356234034699685	-3.03516586986597	down	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_6313	chr14	75369151	75412697	+	75369151	75414255	A3SS	ENSMUST00000125833.8	novel	0.05	1	20	1	20	n	0.18	2	9	2	9	y	0.23	5	17	5	17	y	0.20	2	8	2	8	y	0.38	10	16	10	16	y	0.28	12	31	12	31	y	0.29	7	17	7	17	y	0.26	5	14	5	14	y	0.0328012049781886	-2.87883157424617	down	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6593	chr15	3418195	3487418	-	3418195	3612482	A5SS	ENSMUST00000160343.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.12	1	7	1	7	n	0.60	3	2	3	2	y	0.60	3	2	3	2	y	0.028252045736572	-3.98678238447874	down	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6703	chr15	57746942	57755261	-	57746942	57753738	5pMXE	ENSMUST00000226911.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.0164336170136756	-3.29874822131377	down	ENSMUSG00000022365.7	Derl1	chr15	protein_coding	Der1-like domain family, member 1
novel_NIR_6813	chr15	75869017	75869454	+	75869017	75869419	A3SS	ENSMUST00000089669.6	novel	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.15	4	23	4	23	y	0.17	4	20	4	20	y	0.11	3	25	3	25	n	0.11	2	17	2	17	n	0.00289581216186415	-9	down	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
novel_NIR_6919	chr15	78294144	78294243	+	78290944	78294243	A5SS	ENSMUST00000229791.2	novel	0.14	6	37	6	37	n	-	-	-	-	-	-	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.36	10	18	10	18	y	0.32	9	19	9	19	y	0.35	7	13	7	13	y	0.16	6	31	6	31	y	0.0136030893450398	-3.80282165161167	down	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6921	chr15	78294144	78294243	+	78291470	78294243	A5SS	ENSMUST00000043865.8	novel	0.30	6	14	6	14	y	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.50	10	10	10	10	y	0.47	9	10	9	10	y	0.41	7	10	7	10	y	0.30	6	14	6	14	y	0.0113390689512896	-3.96394642838784	down	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_7027	chr15	82287297;82287500	82287402;82287920	-	82287297	82287920	cassetteExon	ENSMUST00000230198.2	novel	0.30	56.5	131	0;113	131	n	0.17	13.5	64	0;27	64	n	0.30	45.0	104	0;90	104	n	0.10	7.0	60	0;14	60	n	0.39	39.0	60	0;78	60	n	0.38	82.5	133	11;154	133	y	0.43	83.0	108	0;166	108	n	0.41	62.5	91	0;125	91	n	0.0307333527357815	-3.63105916919687	down	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7028	chr15	82287500	82287920	-	82287297	82287920	A3SS	ENSMUST00000230198.2	novel	0.46	113	131	113	131	y	0.30	27	64	27	64	y	0.46	90	104	90	104	y	0.19	14	60	14	60	y	0.57	78	60	78	60	y	0.54	154	133	154	133	n	0.61	166	108	166	108	y	0.58	125	91	125	91	y	0.0402487717116763	-3.29328597941602	down	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7119	chr15	85213734	85243655	+	85220781	85243655	5pMXE	ENSMUST00000163242.3	novel	0.10	20	179	20	179	n	0.05	4	83	4	83	n	0.07	9	128	9	128	n	0.00	0	97	0	97	n	0.16	15	76	15	76	y	0.13	18	116	18	116	n	0.15	18	99	18	99	y	0.21	27	103	27	103	y	0.00797790471561185	-3.97535140628081	down	ENSMUSG00000016541.11	Atxn10	chr15	protein_coding	ataxin 10
novel_NIR_7150	chr15	89054820	89064868	-	89054820;89055319	89055270;89064868	ES	ENSMUST00000109331.9	novel	0.11	17	134.5	17	164;105	n	0.02	1	57.5	1	65;50	n	0.04	4	87.5	4	96;79	n	0.10	8	74.5	8	86;63	n	0.15	8	46.0	8	53;39	y	0.23	27	90.0	27	106;74	y	0.11	8	62.0	8	76;48	n	0.14	13	81.0	13	109;53	n	0.0383500608768371	-2.65877620515359	down	ENSMUSG00000036606.18	Plxnb2	chr15	protein_coding	plexin B2
novel_NIR_7776	chr16	45766076	45773578	+	45766076	45768663	3pMXE	ENSMUST00000134359.2	novel	0.29	4	10	4	10	y	0.20	1	4	1	4	n	0.48	14	15	14	15	y	0.29	2	5	2	5	y	0.76	19	6	19	6	y	0.80	45	11	45	11	y	0.75	15	5	15	5	y	0.33	5	10	5	10	y	0.0441094304918015	-2.75413077485679	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7781	chr16	45766076;45773675	45773374;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.11	2.5	19.5	0;5	34;5	n	0.18	1.0	4.5	0;2	9;0	n	0.22	5.0	17.5	0;10	31;4	n	0.14	1.0	6.0	0;2	11;1	n	0.40	8.5	13.0	0;17	23;3	n	0.41	14.5	21.0	0;29	41;1	n	0.48	6.0	6.5	0;12	11;2	n	0.26	3.5	10.0	2;5	19;1	y	0.00944140702960448	-4.33347203836188	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7782	chr16	45766076;45773675	45773377;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.11	2.5	19.5	0;5	34;5	n	0.18	1.0	4.5	0;2	9;0	n	0.22	5.0	17.5	0;10	31;4	n	0.14	1.0	6.0	0;2	11;1	n	0.42	9.5	13.0	2;17	23;3	y	0.46	18.0	21.0	7;29	41;1	y	0.50	6.5	6.5	1;12	11;2	n	0.20	2.5	10.0	0;5	19;1	n	0.0338913607086924	-3.26701475939294	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7783	chr16	45766076;45773675	45773578;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.19	4.5	19.5	4;5	34;5	y	0.25	1.5	4.5	1;2	9;0	n	0.41	12.0	17.5	14;10	31;4	y	0.25	2.0	6.0	2;2	11;1	y	0.58	18.0	13.0	19;17	23;3	y	0.64	37.0	21.0	45;29	41;1	y	0.68	13.5	6.5	15;12	11;2	y	0.33	5.0	10.0	5;5	19;1	y	0.0280193089916213	-3.08271000379566	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7912	chr16	86567285;86596022	86595896;86600861	-	86567285	86600861	cassetteExon	ENSMUST00000232333.2	novel	0.38	25.0	41	19;31	41	y	0.39	7.0	11	7;7	11	y	0.45	39.0	48	21;57	48	y	0.48	19.5	21	11;28	21	y	0.57	35.5	27	29;42	27	y	0.48	44.5	49	34;55	49	y	0.51	46.5	44	41;52	44	y	0.52	68.0	63	44;92	63	y	0.0221150145461133	-3.12358075880179	down	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7976	chr16	93384788	93386978	-	93384788	93386799	A5SS&ES	ENSMUST00000123756.8	novel	0.04	1	22	1	22	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.09	3	31	3	31	n	0.11	2	17	2	17	n	0.00203219866981195	-5.19615242270663	down	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_8331	chr17	27854307	27855539	-	27853449	27855539	A3SS	ENSMUST00000114881.9	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.47	8	9	8	9	y	0.17	1	5	1	5	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.0300520804284862	-4.27995389866979	down	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8585	chr17	35342214	35344209	-	35342214	35345134	A5SS	ENSMUST00000173576.2	novel	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.18	2	9	2	9	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.25	3	9	3	9	n	0.33	2	4	2	4	n	0.40	4	6	4	6	y	0.0333701708472747	-2.87682389850531	down	ENSMUSG00000092241.2	Gm20522	chr17	lncRNA	predicted gene 20522
novel_NIR_8851	chr17	71897517	71905145	-	71897517	71904931	A5SS	ENSMUST00000130952.8	novel	0.46	12	14	12	14	y	0.19	4	17	4	17	y	0.14	4	24	4	24	n	0.08	1	11	1	11	n	0.50	6	6	6	6	y	0.62	8	5	8	5	y	0.42	5	7	5	7	y	0.41	11	16	11	16	y	0.0403694148956387	-2.7854547770258	down	ENSMUSG00000085492.8	Trmt61b	chr17	lncRNA	tRNA methyltransferase 61B
novel_NIR_8949	chr17	8349131	8349562	-	8349131	8350875	A5SS	ENSMUST00000232307.2	novel	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.03	1	28	1	28	n	0.00	0	10	0	10	n	0.07	2	25	2	25	n	0.08	3	35	3	35	n	0.06	2	32	2	32	n	0.08	3	36	3	36	n	0.000693517741952284	-7.30536933033721	down	ENSMUSG00000116988.2	Gm49673	chr17	protein_coding	predicted gene, 49673
novel_NIR_8977	chr17	84580252	84590964	-	84580252	84617315	A5SS	ENSMUST00000047524.10	novel	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.31	4	9	4	9	y	0.20	2	8	2	8	y	0.09	1	10	1	10	n	0.0297741003781604	-3.90738505813863	down	ENSMUSG00000024251.11	Thada	chr17	protein_coding	thyroid adenoma associated
novel_NIR_9153	chr18	31768383	31769035	+	31768184	31769035	A5SS	ENSMUST00000234846.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0488364799442649	-4.35763823521538	down	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
novel_NIR_9362	chr18	60345241	60364096	+	60345241	60345628	A3SS&ES	ENSMUST00000031549.6	novel	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.30	3	7	3	7	n	0.38	6	10	6	10	y	0.58	15	11	15	11	y	0.29	4	10	4	10	y	0.51	23	22	23	22	y	0.0132289592864289	-3.48473419468033	down	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9518	chr18	75139054	75141722	+	75138971	75141722	A5SS	ENSMUST00000236421.2	novel	0.26	17	49	17	49	y	0.17	8	39	8	39	y	0.31	26	59	26	59	y	0.29	11	27	11	27	y	0.41	20	29	20	29	y	0.36	29	52	29	52	y	0.38	19	31	19	31	y	0.32	19	40	19	40	y	0.0291506297662922	-3.03628846110636	down	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9519	chr18	75139054	75141722	+	75139085	75141722	A5SS	ENSMUST00000040284.6	novel	0.08	17	204	17	204	n	0.06	8	118	8	118	n	0.12	26	190	26	190	n	0.08	11	120	11	120	n	0.15	20	114	20	114	y	0.13	29	196	29	196	n	0.12	19	145	19	145	n	0.11	19	148	19	148	n	0.0360136101951401	-2.79478278419107	down	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9520	chr18	75139054	75141722	+	75139185	75141722	A5SS	ENSMUST00000237263.2	novel	0.14	17	101	17	101	n	0.12	8	56	8	56	n	0.19	26	110	26	110	y	0.15	11	64	11	64	y	0.23	20	67	20	67	y	0.27	29	80	29	80	y	0.20	19	75	19	75	y	0.24	19	59	19	59	y	0.00619977079958853	-4.12310562561766	down	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9984	chr19	4493816	4497325	+	4493816	4494031	A3SS&ES	ENSMUST00000132579.2	novel	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	0.86	6	1	6	1	y	0.0102565087486201	-5.11296839264792	down	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9986	chr19	4493816	4497325	+	4493816;4494066	4494031;4497325	ES	ENSMUST00000154407.8	novel	0.50	1	1.0	1	2;0	n	0.50	1	1.0	1	2;0	n	0.57	2	1.5	2	3;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	0.67	3	1.5	3	2;1	y	0.86	3	0.5	3	1;0	y	0.92	6	0.5	6	1;0	y	0.0127477685784168	-4.5799774553156	down	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9992	chr19	44977796;44979403	44979049;44979612	+	44977796	44979612	cassetteExon	ENSMUST00000236662.2	novel	0.09	6.0	63	2;10	63	n	0.00	0.0	16	0;0	16	n	0.06	2.5	37	0;5	37	n	0.07	1.5	20	1;2	20	n	0.23	9.5	31	2;17	31	y	0.09	5.5	56	0;11	56	n	0.21	7.5	29	0;15	29	n	0.26	16.0	46	1;31	46	n	0.0228009158985642	-3.39229629366861	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9993	chr19	44977796;44979403	44979309;44979612	+	44977796	44979612	cassetteExon	ENSMUST00000236662.2	novel	0.09	6.0	63	2;10	63	n	0.00	0.0	16	0;0	16	n	0.10	4.0	37	3;5	37	n	0.07	1.5	20	1;2	20	n	0.24	10.0	31	3;17	31	y	0.15	9.5	56	8;11	56	y	0.27	10.5	29	6;15	29	y	0.26	16.5	46	2;31	46	y	0.00384183262097038	-4.6514257587759	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9996	chr19	44979403	44979612	+	44977796	44979612	A5SS	ENSMUST00000236662.2	novel	0.14	10	63	10	63	n	0.00	0	16	0	16	n	0.12	5	37	5	37	n	0.09	2	20	2	20	n	0.35	17	31	17	31	n	0.16	11	56	11	56	n	0.34	15	29	15	29	n	0.40	31	46	31	46	n	0.0148508640880761	-3.69274472937998	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_10034	chr19	46326859	46326959	-	46326869	46326959	A3SS	ENSMUST00000236651.2	novel	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.75	6	2	6	2	y	0.25	2	6	2	6	y	0.86	6	1	6	1	y	1.00	3	0	3	0	y	0.0379535420881843	-2.77318399147072	down	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
novel_NIR_10038	chr19	46626135	46632792	+	46612972	46632792	A5SS	ENSMUST00000156649.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.0377495513506237	-5	down	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10204	chr19	60209736	60214742	-	60209736	60213297	A5SS&ES	ENSMUST00000237339.2	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.75	6	2	6	2	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.039031480111312	-2.73243951379209	down	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10844	chr2	160159935	160175831	-	160159935	160169016	5pMXE	ENSMUST00000099127.3	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.44	4	5	4	5	y	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.0189667996912167	-3.48920962093566	down	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_11124	chr2	181493502	181497095	+	181493502	181496731	A3SS	ENSMUST00000029116.14	novel	0.05	3	62	3	62	n	0.00	0	23	0	23	n	0.16	13	66	13	66	y	0.04	1	22	1	22	n	0.15	9	51	9	51	y	0.14	10	64	10	64	n	0.24	7	22	7	22	y	0.15	13	73	13	73	y	0.0461742837097405	-2.58986023909421	down	ENSMUSG00000027589.15	Pcmtd2	chr2	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
novel_NIR_11579	chr2	52040641	52049489	-	52041468	52049489	A3SS&ES	ENSMUST00000135200.2	novel	0.50	3	3	3	3	y	-	-	-	-	-	-	0.29	4	10	4	10	y	0.50	1	1	1	1	n	0.83	5	1	5	1	y	0.88	7	1	7	1	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.00803472915514222	-5.41100851022953	down	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11620	chr2	5808786	5812242	-	5808786;5809844	5809722;5812242	ES	ENSMUST00000043864.9	novel	0.11	19	158.0	19	149;167	n	0.06	6	97.5	6	114;81	n	0.12	21	153.0	21	175;131	n	0.12	13	93.0	13	86;100	n	0.14	16	96.0	16	95;97	n	0.16	31	167.0	31	168;166	y	0.18	27	125.5	27	132;119	y	0.18	32	142.5	32	132;153	y	0.0140774887804401	-3.62103412188951	down	ENSMUSG00000039128.14	Cdc123	chr2	protein_coding	cell division cycle 123
novel_NIR_11621	chr2	5808786	5812242	-	5809844	5812242	3pMXE	ENSMUST00000138312.8	novel	0.10	19	167	19	167	n	0.07	6	81	6	81	n	0.14	21	131	21	131	n	0.12	13	100	13	100	n	0.14	16	97	16	97	n	0.16	31	166	31	166	y	0.18	27	119	27	119	y	0.17	32	153	32	153	y	0.0256841547760603	-3.19771044853596	down	ENSMUSG00000039128.14	Cdc123	chr2	protein_coding	cell division cycle 123
novel_NIR_11821	chr2	84681940	84683012	+	84680536	84683012	A5SS	ENSMUST00000121114.8	novel	0.04	1	25	1	25	n	0.06	1	17	1	17	n	0.27	6	16	6	16	y	0.05	1	19	1	19	n	0.30	3	7	3	7	y	0.50	7	7	7	7	y	0.33	3	6	3	6	y	0.17	2	10	2	10	y	0.0472132391960552	-2.51531258209013	down	ENSMUSG00000027075.17	Slc43a1	chr2	protein_coding	solute carrier family 43, member 1
novel_NIR_12081	chr3	120950165	120952285	-	120950165	120952417	A5SS	ENSMUST00000106466.10	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.05	1	19	1	19	n	0.25	2	6	2	6	y	0.24	4	13	4	13	y	0.0456891243706558	-3.30129342275306	down	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12202	chr3	135564002	135564569	+	135564002	135589958	A3SS	ENSMUST00000081978.10	novel	0.05	3	58	3	58	n	0.06	1	16	1	16	n	0.07	3	41	3	41	n	0.04	1	26	1	26	n	0.22	5	18	5	18	y	0.19	10	43	10	43	y	0.12	3	23	3	23	n	0.20	11	45	11	45	y	0.00712841766382302	-5.62059544153543	down	ENSMUSG00000053897.16	Slc39a8	chr3	protein_coding	solute carrier family 39 (metal ion transporter), member 8
novel_NIR_12237	chr3	138083326	138087589	+	138079968	138087589	A5SS	ENSMUST00000171054.6	novel	0.19	14	58	14	58	y	0.00	0	42	0	42	n	0.41	41	59	41	59	y	0.01	1	71	1	71	n	0.55	51	42	51	42	n	0.66	75	38	75	38	y	0.71	56	23	56	23	y	0.40	26	39	26	39	y	0.0132975283693608	-3.61437932434096	down	ENSMUSG00000090306.6	Adh6-ps1	chr3	transcribed_unprocessed_pseudogene	alcohol dehydrogenase 6 (class V), pseudogene 1
novel_NIR_12306	chr3	148694989;148704509	148704479;148706607	+	148694989	148706607	cassetteExon	ENSMUST00000196445.2	novel	0.11	1.0	8	1;1	8	n	0.14	0.5	3	0;1	3	n	0.00	0.0	9	0;0	9	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	1;0	1	n	0.43	4.5	6	4;5	6	y	0.69	4.5	2	4;5	2	y	0.25	2.0	6	1;3	6	n	0.0255223476836078	-3.53798877280011	down	ENSMUSG00000104786.2	Gm43573	chr3	lncRNA	predicted gene 43573
novel_NIR_12366	chr3	20034897	20036127	+	20035005	20036127	A5SS	ENSMUST00000172605.2	novel	0.67	6	3	6	3	y	0.69	11	5	11	5	y	0.46	6	7	6	7	y	0.47	7	8	7	8	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.82	9	2	9	2	y	0.0409181407980893	-2.97620312527719	down	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12431	chr3	37044037	37048924	+	37044037	37046826	3pMXE	ENSMUST00000211820.2	novel	0.88	14	2	14	2	y	0.85	11	2	11	2	y	0.92	11	1	11	1	y	0.89	8	1	8	1	y	1.00	7	0	7	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	0.00412494988463546	-7.96743371481683	down	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12432	chr3	37044037	37048924	+	37044037;37046876	37046826;37048924	ES	ENSMUST00000057272.15	novel	0.90	14	1.5	14	2;1	y	0.88	11	1.5	11	2;1	y	0.85	11	2.0	11	1;3	y	0.89	8	1.0	8	1;1	y	0.93	7	0.5	7	0;1	y	1.00	12	0.0	12	0;0	y	-	-	-	-	-	-	1.00	10	0.0	10	0;0	y	0.0356803872545513	-3.75958159660256	down	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12598	chr3	85982495;85984044	85983905;85986252	+	85982495	85986252	cassetteExon	ENSMUST00000238545.2	novel	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.00	0.0	13	0;0	13	n	0.09	0.5	5	0;1	5	n	0.08	0.5	6	0;1	6	n	0.22	4.0	14	5;3	14	y	0.14	1.0	6	2;0	6	n	0.08	1.0	12	1;1	12	n	0.0413640538136025	-2.68226630467276	down	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
novel_NIR_12712	chr3	89299813;89304737	89304580;89305266	+	89299813	89305266	cassetteExon	ENSMUST00000145400.8	novel	0.04	2.0	46	0;4	46	n	0.10	4.0	36	4;4	36	n	0.20	9.0	37	11;7	37	y	0.02	0.5	25	0;1	25	n	0.33	2.5	5	5;0	5	n	0.12	6.0	43	7;5	43	n	0.28	10.0	26	8;12	26	y	0.26	7.0	20	7;7	20	y	0.0408272383249165	-2.60472942637338	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12719	chr3	89303169	89305266	+	89299609	89305266	A5SS	ENSMUST00000152143.2	novel	0.65	11	6	11	6	y	0.27	3	8	3	8	y	0.30	8	19	8	19	y	0.12	1	7	1	7	n	0.75	15	5	15	5	y	0.58	11	8	11	8	y	0.68	15	7	15	7	y	0.78	14	4	14	4	y	0.0407867004893954	-3.00543686062191	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12739	chr3	89905287	89905835	-	89905410	89905835	A3SS	ENSMUST00000199163.2	novel	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.56	5	4	5	4	y	0.65	11	6	11	6	y	0.22	2	7	2	7	y	0.71	12	5	12	5	y	0.0190506787104388	-3.62941729991615	down	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12869	chr3	97536511	97540443	+	97536511	97536888	3pMXE	ENSMUST00000133017.8	novel	0.10	3	27	3	27	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.18	4	18	4	18	y	0.12	2	15	2	15	n	0.22	2	7	2	7	y	0.00645971238163043	-4.14281701143365	down	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
novel_NIR_13111	chr4	116567481	116571213	+	116567481	116568508	A3SS&ES	ENSMUST00000030452.13	novel	0.25	5	15	5	15	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.58	7	5	7	5	y	0.35	8	15	8	15	y	0.25	2	6	2	6	y	0.18	2	9	2	9	y	0.0454128057190126	-2.58512636483868	down	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13112	chr4	116567481	116571213	+	116570023	116571213	5pMXE	ENSMUST00000134192.2	novel	0.42	5	7	5	7	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	7	0	7	0	y	1.00	8	0	8	0	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.0274917318316199	-3.1120751163159	down	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13215	chr4	124743618	124744025	-	124743755	124744025	A3SS	ENSMUST00000163946.2	novel	0.04	7	151	7	151	n	0.04	5	120	5	120	n	0.05	5	103	5	103	n	0.04	4	91	4	91	n	0.09	7	74	7	74	n	0.07	10	127	10	127	n	0.11	16	127	16	127	n	0.07	6	81	6	81	n	0.0178656632502904	-4.29497479743925	down	ENSMUSG00000078570.11	1110065P20Rik	chr4	protein_coding	RIKEN cDNA 1110065P20 gene
novel_NIR_13309	chr4	131663178	131664365	-	131663178	131684954	A5SS	ENSMUST00000146443.8	novel	0.10	3	26	3	26	n	0.09	2	20	2	20	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.20	2	8	2	8	y	0.17	2	10	2	10	y	0.12	2	14	2	14	n	0.0324424545612822	-2.79599527477198	down	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13459	chr4	140969697	140972129	+	140970321	140972129	5pMXE	ENSMUST00000138096.8	novel	0.62	5	3	5	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.0177207411069677	-3.48075979494177	down	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
novel_NIR_13489	chr4	144813381	144813695	-	144813400	144813695	A3SS	ENSMUST00000036579.14	novel	0.12	10	73	10	73	n	0.08	2	24	2	24	n	0.12	7	52	7	52	n	0.11	5	42	5	42	n	0.16	6	31	6	31	y	0.20	14	57	14	57	y	0.19	5	22	5	22	y	0.18	11	50	11	50	y	0.00110942629176653	-5.88348405414552	down	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13529	chr4	14886682	14893501	+	14886682;14892499	14892393;14893501	ES	ENSMUST00000029875.4	novel	0.08	3	35.0	3	32;38	n	0.00	0	20.5	0	18;23	n	0.00	0	30.5	0	26;35	n	0.11	3	25.5	3	31;20	n	0.16	4	21.0	4	15;27	y	0.29	15	37.5	15	43;32	y	0.12	3	22.5	3	24;21	n	0.16	5	26.5	5	32;21	y	0.0295242831556725	-2.90305798508054	down	ENSMUSG00000028221.4	Pip4p2	chr4	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
novel_NIR_13708	chr4	32562009	32565508	-	32562009;32563226	32563063;32565508	ES	ENSMUST00000126225.2	novel	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.67	2	1.0	2	2;0	y	0.0149345014131363	-8.09090909090909	down	ENSMUSG00000086150.2	Bach2os	chr4	lncRNA	BTB and CNC homology 2, opposite strand
novel_NIR_13757	chr4	41371849	41378460	+	41371849	41387175	A3SS	ENSMUST00000132235.2	novel	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.73	8	3	8	3	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	0.62	5	3	5	3	y	0.92	11	1	11	1	y	0.0431131112197669	-2.82190358266829	down	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
novel_NIR_13838	chr4	44982241	44982879	+	44981550	44982879	A5SS	ENSMUST00000128973.2	novel	0.85	33	6	33	6	y	0.80	16	4	16	4	y	0.68	17	8	17	8	y	0.76	16	5	16	5	y	0.90	18	2	18	2	y	0.94	33	2	33	2	y	1.00	15	0	15	0	y	0.88	15	2	15	2	y	0.0142034407332786	-3.53101441900555	down	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_14003	chr4	81266927	81267239	-	81266981	81267239	A3SS	ENSMUST00000107262.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.0472778014501495	-3.44823886238029	down	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
novel_NIR_14070	chr4	95737913	95759285	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.67	4	2	4	2	y	0.00808087833688157	-6.2996785960256	down	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14346	chr5	114293606	114303570	+	114284886	114303570	A5SS	ENSMUST00000102582.8	novel	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.77	10	3	10	3	y	0.75	15	5	15	5	y	0.40	2	3	2	3	y	1.00	12	0	12	0	y	0.0081329069056279	-3.95947210557654	down	ENSMUSG00000042010.17	Acacb	chr5	protein_coding	acetyl-Coenzyme A carboxylase beta
novel_NIR_14483	chr5	122384737	122385983	-	122385680	122385983	A3SS&ES	ENSMUST00000111738.8	novel	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.0292942446973154	-3.31632772153933	down	ENSMUSG00000038593.19	Tctn1	chr5	protein_coding	tectonic family member 1
novel_NIR_14842	chr5	146022823	146024181	+	146022660	146024181	A5SS	ENSMUST00000199212.5	novel	0.09	4	39	4	39	n	0.00	0	2	0	2	n	0.03	1	35	1	35	n	0.00	0	4	0	4	n	0.31	30	67	30	67	n	0.14	9	55	9	55	n	0.39	40	63	40	63	n	0.13	10	68	10	68	n	0.0394772202880649	-3.14240596708302	down	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14892	chr5	151330082;151331532	151331465;151347978	+	151330082	151347978	cassetteExon	ENSMUST00000201142.4	novel	0.22	2.0	7	4;0	7	n	-	-	-	-	-	-	0.25	1.0	3	1;1	3	n	-	-	-	-	-	-	0.71	2.5	1	5;0	1	n	0.33	3.5	7	4;3	7	y	0.47	3.5	4	7;0	4	n	0.50	2.0	2	3;1	2	n	0.0398683746437921	-3.34865885999557	down	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14893	chr5	151330082;151331532	151331465;151353540	+	151330082;151351635	151347978;151353540	MXE	ENSMUST00000201142.4	novel	0.18	2.0	9.0	4;0	7;11	n	0.00	0.0	0.5	0;0	0;1	n	0.05	0.5	9.5	1;0	3;16	n	0.00	0.0	5.0	0;0	0;10	n	0.29	2.5	6.0	5;0	1;11	n	0.19	4.0	17.5	4;4	7;28	y	0.39	4.5	7.0	7;2	4;10	y	0.15	2.5	14.5	3;2	2;27	y	0.0297067630951279	-2.88147227704351	down	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_15002	chr5	31085223	31085787	+	31082199	31085787	A5SS	ENSMUST00000201571.4	novel	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.33	5	10	5	10	y	0.24	4	13	4	13	y	0.10	1	9	1	9	n	0.12	2	14	2	14	n	0.0386364189198909	-3.17578385801686	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15003	chr5	31085223	31085787	+	31084166	31085787	A5SS	ENSMUST00000202752.2	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.42	5	7	5	7	y	0.40	4	6	4	6	y	0.09	1	10	1	10	n	0.20	2	8	2	8	y	0.0463855116247541	-2.90215696313464	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15325	chr5	87239705	87240309	-	87239705	87240084	A5SS	ENSMUST00000132667.2	novel	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.32	6	13	6	13	y	0.30	6	14	6	14	y	0.24	4	13	4	13	y	0.0443567518243179	-2.53538443542654	down	ENSMUSG00000070704.11	Ugt2b36	chr5	protein_coding	UDP glucuronosyltransferase 2 family, polypeptide B36
novel_NIR_15364	chr5	90730012	90732092	+	90729873	90732092	A5SS	ENSMUST00000094615.8	novel	0.11	7	57	7	57	n	0.05	2	39	2	39	n	0.26	13	37	13	37	y	0.00	0	28	0	28	n	0.32	24	51	24	51	y	0.28	38	96	38	96	y	0.34	24	46	24	46	y	0.42	53	74	53	74	y	0.016800143933433	-3.69647366090619	down	ENSMUSG00000070690.8	Albfm1	chr5	protein_coding	albumin superfamily member 1
novel_NIR_15806	chr6	135132287	135140987	-	135132287	135145136	A5SS	ENSMUST00000204000.2	novel	0.88	59	8	59	8	y	0.83	20	4	20	4	y	0.87	55	8	55	8	y	0.92	22	2	22	2	y	0.95	60	3	60	3	y	0.93	62	5	62	5	y	0.92	69	6	69	6	y	0.93	57	4	57	4	y	0.0466863942490629	-2.94484823845661	down	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15879	chr6	141578890	141580115	+	141578890	141580110	A3SS	ENSMUST00000042812.9	novel	0.38	11	18	11	18	y	0.38	3	5	3	5	y	0.33	13	26	13	26	y	0.00	0	12	0	12	n	0.62	23	14	23	14	y	0.58	33	24	33	24	y	0.75	12	4	12	4	y	0.49	18	19	18	19	y	0.0256893441536468	-3.17405527136369	down	ENSMUSG00000030236.11	Slco1b2	chr6	protein_coding	solute carrier organic anion transporter family, member 1b2
novel_NIR_15884	chr6	141812736	141820477	+	141812736	141820312	A3SS	ENSMUST00000204491.2	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.12	4	29	4	29	n	0.11	3	25	3	25	n	0.04	1	24	1	24	n	0.05	2	38	2	38	n	0.029541363360541	-3.91918358845309	down	ENSMUSG00000107516.2	Gm30784	chr6	lncRNA	predicted gene, 30784
novel_NIR_16482	chr6	86415829	86416110	+	86415829	86416106	A3SS	ENSMUST00000143430.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.38	3	5	3	5	y	0.0168221391466116	-4.84014604303461	down	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
novel_NIR_16483	chr6	86415829	86416110	+	86415829	86420709	A3SS	ENSMUST00000141972.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.13	2	13	2	13	n	0.60	3	2	3	2	y	0.60	3	2	3	2	y	0.0281133893538219	-3.99428806227431	down	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
novel_NIR_16559	chr6	90202499	90209669	-	90202449	90209669	A3SS	ENSMUST00000204789.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.0350538096087997	-18.1428571428571	down	ENSMUSG00000092247.3	Gm20426	chr6	transcribed_processed_pseudogene	predicted gene 20426
novel_NIR_16650	chr7	100648307	100651919	-	100648307	100660919	A5SS	ENSMUST00000178340.3	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00155781419748203	-11.1212121212121	down	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_17414	chr7	23834740	23835408	+	23834740	23835411	A3SS	ENSMUST00000205736.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.71	5	2	5	2	y	0.60	3	2	3	2	y	0.80	4	1	4	1	y	0.0161130097393053	-3.7411112299465	down	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17578	chr7	30436784	30437086	+	30436784	30444974	A3SS	ENSMUST00000180820.8	novel	-	-	-	-	-	-	0.78	7	2	7	2	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	0.0148201613266951	-8.12276932106895	down	ENSMUSG00000097320.9	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
novel_NIR_17721	chr7	43106061	43106661	+	43106061	43112561	A3SS	ENSMUST00000203633.3	novel	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.0221457884124725	-4.37141326972466	down	ENSMUSG00000107482.3	Etfbl	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide like
novel_NIR_17746	chr7	44116269	44116603	+	44116237	44116603	A5SS	ENSMUST00000135624.2	novel	0.51	21	20	21	20	y	0.50	7	7	7	7	y	0.48	15	16	15	16	y	0.53	9	8	9	8	y	0.56	10	8	10	8	y	0.58	25	18	25	18	y	0.55	22	18	22	18	y	0.56	15	12	15	12	y	0.00538685344240848	-4.72780209780997	down	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
novel_NIR_17811	chr7	44640905	44641447	+	44636794	44641447	A5SS	ENSMUST00000152595.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.0115014593351988	-3.59433567698511	down	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17812	chr7	44640905	44641447	+	44640905	44641018	3pMXE	ENSMUST00000141011.2	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.40	4	6	4	6	y	0.0208905282610508	-3.16690764458076	down	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17874	chr7	45363697	45368677	+	45368004	45368677	5pMXE	ENSMUST00000209287.2	novel	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.08	1	11	1	11	n	0.0333681127392673	-3.73897307809442	down	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
novel_NIR_17921	chr7	4649939	4660562	-	4649939	4661678	A5SS	ENSMUST00000205374.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.0321841563135666	-3.79177436057791	down	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_18618	chr8	118429002	118434960	+	118429002;118434429	118434139;118434960	ES	ENSMUST00000212052.2	novel	0.33	1	2.0	1	0;4	n	0.00	0	0.5	0	0;1	n	0.44	2	2.5	2	3;2	y	0.00	0	2.0	0	4;0	n	0.43	5	6.5	5	3;10	y	0.53	4	3.5	4	3;4	y	0.71	6	2.5	6	3;2	y	0.80	8	2.0	8	3;1	y	0.0261583035325426	-3.01179935289883	down	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18655	chr8	122730829	122732291	+	122727870	122732291	A5SS	ENSMUST00000093078.13	novel	0.20	9	35	9	35	y	0.00	0	16	0	16	n	0.09	2	21	2	21	n	0.05	1	18	1	18	n	0.26	6	17	6	17	y	0.28	5	13	5	13	y	0.46	11	13	11	13	y	0.40	12	18	12	18	y	0.00630755966309374	-4.13440519156413	down	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
novel_NIR_18701	chr8	124474767	124480797	-	124474732	124480797	A3SS	ENSMUST00000181805.3	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.23	5	17	5	17	y	0.0169843979096467	-4.82312448864173	down	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_19228	chr8	71246686	71249357	-	71242729	71249357	A3SS	ENSMUST00000166004.3	novel	0.24	6	19	6	19	y	0.14	1	6	1	6	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.62	10	6	10	6	y	0.54	14	12	14	12	y	0.43	6	8	6	8	y	0.62	15	9	15	9	y	0.00104883171567825	-5.98311733047578	down	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
novel_NIR_19309	chr8	80438473	80439782	+	80438473	80439734	A3SS	ENSMUST00000048147.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.89	8	1	8	1	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.0117678307191507	-3.64640984141085	down	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19310	chr8	80438473	80439782	+	80438603	80439782	5pMXE	ENSMUST00000210812.2	novel	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.80	8	2	8	2	y	0.40	2	3	2	3	y	0.38	3	5	3	5	y	0.0127529478939012	-3.97662216911727	down	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19360	chr8	85594277	85594348	+	85594277	85594382	A3SS	ENSMUST00000109754.2	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.0353528470025174	-3.65563077506965	down	ENSMUSG00000003808.19	Farsa	chr8	protein_coding	phenylalanyl-tRNA synthetase, alpha subunit
novel_NIR_19602	chr9	106741746	106747402	-	106715656	106747402	A3SS	ENSMUST00000159620.9	novel	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.0201389618476639	-4.52903909476958	down	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
novel_NIR_19636	chr9	107458535	107460016	+	107456169	107460016	A5SS	ENSMUST00000127380.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00155781419748203	-11.1212121212121	down	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
novel_NIR_19642	chr9	107532632	107532784	-	107532666	107532784	A3SS	ENSMUST00000192211.2	novel	0.69	40	18	40	18	y	0.77	10	3	10	3	y	0.68	54	26	54	26	y	0.70	28	12	28	12	y	0.80	39	10	39	10	y	0.72	47	18	47	18	y	0.81	34	8	34	8	y	0.84	68	13	68	13	y	0.0473145651080684	-2.51866816400818	down	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19899	chr9	121681671	121686578	-	121685938	121686578	A3SS&ES	ENSMUST00000213147.2	novel	0.86	37	6	37	6	y	0.83	10	2	10	2	y	0.81	50	12	50	12	y	0.94	17	1	17	1	y	1.00	34	0	34	0	y	0.94	45	3	45	3	y	0.92	46	4	46	4	y	0.98	46	1	46	1	y	0.0311745438498154	-2.94883912309794	down	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_20607	chr9	70727824	70728133	-	70727824	70730655	A5SS	ENSMUST00000034731.10	novel	0.15	19	108	19	108	y	0.20	3	12	3	12	y	0.16	23	119	23	119	y	0.18	4	18	4	18	y	0.22	48	175	48	175	y	0.24	85	263	85	263	y	0.22	64	222	64	222	y	0.20	49	192	49	192	y	0.0155972696404602	-3.44979693621217	down	ENSMUSG00000032207.11	Lipc	chr9	protein_coding	lipase, hepatic
novel_NIR_21025	chrX	150706557	150707658	+	150706602	150707658	A5SS	ENSMUST00000026292.15	novel	0.42	77	108	77	108	y	0.34	26	50	26	50	y	0.43	54	72	54	72	y	0.41	32	46	32	46	y	0.52	60	55	60	55	y	0.49	78	80	78	80	y	0.43	49	64	49	64	y	0.45	63	78	63	78	y	0.0448478849422055	-2.52731908791745	down	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21079	chrX	16637258	16681490	-	16637258;16673955	16673774;16681490	ES	ENSMUST00000173143.2	novel	0.57	2	1.5	2	3;0	y	0.00	0	2.0	0	4;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	1.00	3	0.0	3	0;0	y	0.67	4	2.0	4	4;0	y	0.75	3	1.0	3	1;1	y	0.75	6	2.0	6	4;0	y	0.0123322263843532	-4.07478799045855	down	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
