X.ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLPDCA_1.Ratio	CLPDCA_1.Alt_average_sj	CLPDCA_1.Model_average_sj	CLPDCA_1.Alt_sj	CLPDCA_1.Model_sj	CLPDCA_1.isfiltered	CLPDCA_2.Ratio	CLPDCA_2.Alt_average_sj	CLPDCA_2.Model_average_sj	CLPDCA_2.Alt_sj	CLPDCA_2.Model_sj	CLPDCA_2.isfiltered	CLPDCA_3.Ratio	CLPDCA_3.Alt_average_sj	CLPDCA_3.Model_average_sj	CLPDCA_3.Alt_sj	CLPDCA_3.Model_sj	CLPDCA_3.isfiltered	CLPDCA_4.Ratio	CLPDCA_4.Alt_average_sj	CLPDCA_4.Model_average_sj	CLPDCA_4.Alt_sj	CLPDCA_4.Model_sj	CLPDCA_4.isfiltered	Sham_1.Ratio	Sham_1.Alt_average_sj	Sham_1.Model_average_sj	Sham_1.Alt_sj	Sham_1.Model_sj	Sham_1.isfiltered	Sham_2.Ratio	Sham_2.Alt_average_sj	Sham_2.Model_average_sj	Sham_2.Alt_sj	Sham_2.Model_sj	Sham_2.isfiltered	Sham_3.Ratio	Sham_3.Alt_average_sj	Sham_3.Model_average_sj	Sham_3.Alt_sj	Sham_3.Model_sj	Sham_3.isfiltered	Sham_4.Ratio	Sham_4.Alt_average_sj	Sham_4.Model_average_sj	Sham_4.Alt_sj	Sham_4.Model_sj	Sham_4.isfiltered	Pvalue	Tvalue	DiffType	Gene	Symbol	Chr	GeneType	Description
known_NIR_47	chr1	120171997	120197855	-	120171997	120197713	A5SS	ENSMUST00000112641.8	known	0.93	13	1	13	1	n	0.67	6	3	6	3	n	0.67	2	1	2	1	n	0.76	19	6	19	6	y	0.65	11	6	11	6	y	0.51	21	20	21	20	y	0.43	6	8	6	8	y	0.53	8	7	8	7	y	0.0271347314350583	2.9813372994385	up	ENSMUSG00000026389.17	Steap3	chr1	protein_coding	STEAP family member 3
known_NIR_375	chr1	16716053;16717277	16717212;16718179	-	16716053	16718179	cassetteExon	ENSMUST00000188641.7	known	0.02	4.5	223	4;5	223	y	0.02	4.0	208	5;3	208	y	0.03	10.0	303	7;13	303	y	0.01	3.0	217	3;3	217	y	0.00	1.0	253	1;1	253	n	0.01	4.0	264	4;4	264	y	0.01	3.0	222	2;4	222	y	0.01	2.0	278	2;2	278	y	0.0478566196408534	2.61116483933547	up	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_381	chr1	16718231	16727216	-	16718231	16727046	5pMXE	ENSMUST00000188641.7	known	0.22	25	91	25	91	y	0.25	26	80	26	80	y	0.30	42	100	42	100	y	0.18	21	97	21	97	y	0.15	17	100	17	100	y	0.14	18	114	18	114	y	0.15	15	83	15	83	y	0.19	25	110	25	110	y	0.0427979289033942	2.89714387336059	up	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_599	chr1	194786215	194789126	-	194781149	194789126	A3SS	ENSMUST00000193094.6	known	0.98	117	2	117	2	y	1.00	152	0	152	0	n	0.97	97	3	97	3	y	0.99	109	1	109	1	n	0.98	96	2	96	2	y	0.95	134	7	134	7	y	0.96	108	5	108	5	y	0.95	106	6	106	6	y	0.0403639628021936	2.61116483933547	up	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_703	chr1	38034922	38035974	-	38034922	38036190	A5SS	ENSMUST00000162031.8	known	0.31	31	69	31	69	y	0.27	21	58	21	58	y	0.31	35	77	35	77	y	0.23	31	106	31	106	y	0.24	17	53	17	53	y	0.21	24	92	24	92	y	0.11	10	78	10	78	y	0.16	17	87	17	87	y	0.0316962316051026	2.90700949866906	up	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_704	chr1	38034922	38035974	-	38034922	38036245	A5SS	ENSMUST00000193832.6	known	0.70	31	13	31	13	y	0.57	21	16	21	16	y	0.64	35	20	35	20	y	0.57	31	23	31	23	y	0.42	17	23	17	23	y	0.48	24	26	24	26	y	0.43	10	13	10	13	y	0.59	17	12	17	12	y	0.0326861878258655	2.8	up	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_789	chr1	53360369;53360726	53360464;53362326	+	53360369	53362326	cassetteExon	ENSMUST00000151296.8	known	0.86	38.0	6	0;76	6	n	0.79	30.5	8	0;61	8	n	0.85	28.5	5	0;57	5	n	0.83	28.5	6	0;57	6	n	0.79	26.5	7	0;53	7	n	0.76	51.0	16	0;102	16	n	0.70	37.5	16	0;75	16	n	0.66	36.5	19	0;73	19	n	0.0281729862464374	3.17188217024232	up	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
known_NIR_831	chr1	58752818	58761488	+	58752818	58756419	3pMXE	ENSMUST00000097723.3	known	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.67	8	4	8	4	y	0.83	5	1	5	1	n	0.60	6	4	6	4	y	0.46	6	7	6	7	y	0.58	7	5	7	5	y	0.60	6	4	6	4	y	0.00636166223707391	4.27156682361825	up	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_971	chr1	75187802	75187884	+	75187668	75187884	A5SS	ENSMUST00000123825.8	known	0.34	16	31	16	31	y	0.18	8	37	8	37	y	0.27	13	35	13	35	y	0.34	18	35	18	35	y	0.12	4	29	4	29	y	0.19	14	58	14	58	y	0.11	4	33	4	33	y	0.22	7	25	7	25	y	0.0427882595719394	2.63807132008501	up	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_972	chr1	75187802	75187884	+	75187696	75187884	A5SS	ENSMUST00000027401.11	known	0.09	16	164	16	164	y	0.05	8	169	8	169	y	0.07	13	161	13	161	y	0.09	18	184	18	184	y	0.03	4	141	4	141	y	0.06	14	236	14	236	y	0.02	4	184	4	184	y	0.04	7	184	7	184	y	0.0269261666278374	2.92306411107734	up	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_996	chr1	75412655;75412837	75412759;75413422	+	75412655	75413422	cassetteExon	ENSMUST00000037796.14	known	0.08	2.0	24	0;4	24	n	0.06	2.0	31	0;4	31	n	0.07	4.0	55	0;8	55	n	0.04	1.0	26	0;2	26	n	0.00	0.0	29	0;0	29	n	0.01	0.5	33	0;1	33	n	0.00	0.0	21	0;0	21	n	0.06	2.5	39	2;3	39	y	0.0441697385270668	2.69327520749061	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_998	chr1	75412837	75413422	+	75412956	75413422	A5SS	ENSMUST00000113584.8	known	0.18	4	18	4	18	y	0.10	4	38	4	38	y	0.14	8	51	8	51	y	0.05	2	35	2	35	y	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.07	3	40	3	40	y	0.0444555617316827	2.65080528188085	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1011	chr1	82705057;82705959	82705788;82706937	+	82705057	82706937	cassetteExon	ENSMUST00000078332.13	known	0.08	4.5	54	5;4	54	y	0.06	3.5	56	3;4	56	y	0.05	5.0	102	4;6	102	y	0.06	5.0	79	2;8	79	y	0.02	1.5	61	0;3	61	n	0.04	4.0	92	2;6	92	y	0.05	3.5	69	2;5	69	y	0.04	4.0	98	2;6	98	y	0.0307660079955187	2.80975743474508	up	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1164	chr1	92845848	92846628	+	92845848	92846660	A3SS	ENSMUST00000178816.8	known	1.00	9	0	9	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.25	2	6	2	6	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.41	9	13	9	13	y	0.00312670492169784	8.76598950844024	up	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1199	chr1	93757618	93763009	+	93757618;93760511	93760318;93763009	ES	ENSMUST00000097633.10	known	0.12	3	23.0	3	14;32	y	0.09	2	19.5	2	21;18	y	0.10	2	19.0	2	12;26	y	0.08	4	45.0	4	37;53	y	0.00	0	34.0	0	31;37	n	0.05	3	55.0	3	45;65	y	0.00	0	51.5	0	41;62	n	0.00	0	44.5	0	34;55	n	0.00205470815984547	5.61491520214444	up	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
known_NIR_1256	chr10	115208851	115220110	-	115208851;115212452	115212257;115220110	ES	ENSMUST00000218842.2	known	0.25	4	12.0	4	18;6	y	0.29	5	12.5	5	11;14	y	0.13	7	45.5	7	59;32	y	0.19	5	21.5	5	23;20	y	0.15	2	11.5	2	12;11	y	0.03	1	28.0	1	34;22	n	0.08	1	11.5	1	11;12	n	0.00	0	13.5	0	18;9	n	0.0204986885129387	3.12771621085612	up	ENSMUSG00000020137.6	Thap2	chr10	protein_coding	THAP domain containing, apoptosis associated protein 2
known_NIR_1302	chr10	121212639	121214000	+	121212639	121213927	A3SS	ENSMUST00000040344.7	known	0.02	3	178	3	178	y	0.03	5	141	5	141	y	0.03	6	221	6	221	y	0.02	6	294	6	294	y	0.00	1	206	1	206	n	0.02	7	300	7	300	y	0.00	0	225	0	225	n	0.00	0	301	0	301	n	0.019184626915828	3.46410161513775	up	ENSMUSG00000034707.8	Gns	chr10	protein_coding	glucosamine (N-acetyl)-6-sulfatase
known_NIR_1367	chr10	127836545	127843352	-	127836545	127843314	A5SS	ENSMUST00000219447.2	known	1.00	101	0	101	0	n	1.00	142	0	142	0	n	1.00	8	0	8	0	n	1.00	92	0	92	0	n	0.99	134	2	134	2	y	0.98	196	4	196	4	y	0.95	159	8	159	8	y	0.97	242	7	242	7	y	0.0485668565598008	3.22047024073017	up	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
known_NIR_1392	chr10	128158399	128159199	+	128158644	128159199	A5SS	ENSMUST00000219037.2	known	0.12	23	175	23	175	y	0.11	29	236	29	236	y	0.09	22	214	22	214	y	0.12	26	185	26	185	y	0.05	11	190	11	190	y	0.08	26	287	26	287	y	0.08	19	228	19	228	y	0.08	21	241	21	241	y	0.0109260063809751	3.63803437554499	up	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
known_NIR_1411	chr10	128326902;128327633	128327589;128327928	-	128326902	128327928	cassetteExon	ENSMUST00000164181.2	known	0.03	27.0	931	20;34	931	y	0.03	31.0	1183	31;31	1183	y	0.03	34.5	1164	32;37	1164	y	0.02	15.5	753	11;20	753	y	0.02	17.0	846	13;21	846	y	0.01	20.5	1388	18;23	1388	y	0.02	21.0	1212	18;24	1212	y	0.02	26.0	1183	22;30	1183	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1538	chr10	29230443;29237341	29237281;29237980	-	29230443	29237980	cassetteExon	ENSMUST00000160144.9	known	0.74	8.5	3	15;2	3	y	0.79	15.0	4	21;9	4	y	0.87	13.0	2	24;2	2	y	0.56	12.5	10	19;6	10	y	0.58	5.5	4	8;3	4	y	0.46	8.5	10	15;2	10	y	0.35	7.0	13	14;0	13	n	0.41	7.5	11	13;2	11	y	0.0139140587020655	3.54291388633285	up	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1639	chr10	59732317	59733313	+	59732269	59733313	A5SS	ENSMUST00000147914.8	known	0.54	29	25	29	25	y	0.54	27	23	27	23	y	0.55	32	26	32	26	y	0.45	26	32	26	32	y	0.45	31	38	31	38	y	0.31	23	51	23	51	y	0.42	30	42	30	42	y	0.35	24	44	24	44	y	0.0153449213227298	3.46696806297215	up	ENSMUSG00000020109.14	Dnajb12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member B12
known_NIR_1823	chr10	78187545	78188047	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	known	1.00	45	0	45	0	n	1.00	54	0	54	0	n	1.00	59	0	59	0	n	1.00	63	0	63	0	n	0.98	40	1	40	1	n	0.99	74	1	74	1	n	0.98	65	1	65	1	n	0.98	63	1	63	1	n	0.00598625569770705	7.00000000000002	up	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1860	chr10	79690555	79694586	+	79690555;79692368	79692338;79694586	ES	ENSMUST00000172282.8	known	0.03	3	106.0	3	87;125	y	0.02	2	88.5	2	80;97	y	0.01	3	311.5	3	275;348	y	0.01	1	181.0	1	164;198	n	0.00	0	128.5	0	109;148	n	0.00	0	182.0	0	154;210	n	0.00	0	113.0	0	92;134	n	0.00	0	157.0	0	134;180	n	0.0353528470025174	3.65563077506966	up	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1946	chr10	80639557	80639635	+	80639557	80639654	A3SS	ENSMUST00000148665.8	known	0.03	2	65	2	65	y	0.05	2	38	2	38	y	0.04	2	43	2	43	y	0.07	3	41	3	41	y	0.03	1	30	1	30	n	0.00	0	58	0	58	n	0.00	0	34	0	34	n	0.02	1	53	1	53	n	0.0221401194325061	3.07958941544842	up	ENSMUSG00000020211.16	Sf3a2	chr10	protein_coding	splicing factor 3a, subunit 2
known_NIR_2182	chr11	101302050	101302120	-	101302025	101302120	A3SS	ENSMUST00000107257.8	known	0.02	2	86	2	86	y	0.07	5	68	5	68	y	0.03	2	74	2	74	y	0.05	6	111	6	111	y	0.00	0	58	0	58	n	0.01	1	103	1	103	n	0.01	1	101	1	101	n	0.01	1	96	1	96	n	0.0476503883849479	3.07958941544842	up	ENSMUSG00000097239.8	Gm27029	chr11	protein_coding	predicted gene, 27029
known_NIR_2351	chr11	113590808	113593239	-	113590808;113592921	113592882;113593239	ES	ENSMUST00000173655.8	known	0.32	5	10.5	5	8;13	y	0.30	6	14.0	6	18;10	y	0.38	3	5.0	3	5;5	y	0.29	8	19.5	8	20;19	y	0.18	2	9.0	2	9;9	y	0.20	6	24.5	6	23;26	y	0.22	4	14.5	4	12;17	y	0.21	2	7.5	2	6;9	y	0.00522517779634475	5.48198631091354	up	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2352	chr11	113590808	113593239	-	113592921	113593239	A3SS&ES	ENSMUST00000106617.8	known	0.28	5	13	5	13	y	0.38	6	10	6	10	y	0.38	3	5	3	5	n	0.30	8	19	8	19	y	0.18	2	9	2	9	y	0.19	6	26	6	26	y	0.19	4	17	4	17	y	0.18	2	9	2	9	y	0.0101889405027344	5.66946709513841	up	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2360	chr11	114559511	114559607	+	114559435	114559607	A5SS	ENSMUST00000106602.10	known	0.04	18	448	18	448	y	0.03	16	522	16	522	y	0.04	28	712	28	712	y	0.04	19	418	19	418	y	0.02	11	455	11	455	y	0.03	19	595	19	595	y	0.03	14	526	14	526	y	0.02	15	601	15	601	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000057322.13	Rpl38	chr11	protein_coding	ribosomal protein L38
known_NIR_2677	chr11	29476487	29479929	+	29476565	29479929	A5SS	ENSMUST00000136351.8	known	0.86	6	1	6	1	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.57	4	3	4	3	n	0.73	8	3	8	3	y	0.67	4	2	4	2	n	0.78	7	2	7	2	n	0.00334292032944376	4.85678756483174	up	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2809	chr11	4833253	4833368	+	4833171	4833368	A5SS	ENSMUST00000136552.8	known	0.90	18	2	18	2	y	0.86	12	2	12	2	y	0.96	25	1	25	1	n	0.94	16	1	16	1	n	0.79	19	5	19	5	y	0.86	24	4	24	4	y	0.84	16	3	16	3	y	0.88	30	4	30	4	y	0.0494972012987086	2.46566787550334	up	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2840	chr11	5014478	5015215	-	5014478	5014837	5pMXE	ENSMUST00000156196.2	known	0.39	9	14	9	14	y	0.62	10	6	10	6	y	0.38	23	37	23	37	y	0.50	12	12	12	12	y	0.25	4	12	4	12	y	0.34	10	19	10	19	y	0.31	5	11	5	11	y	0.16	4	21	4	21	y	0.0268121353225453	3.01668631136698	up	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2841	chr11	5014478	5015215	-	5015094	5015215	A3SS	ENSMUST00000151936.2	known	0.47	9	10	9	10	y	0.50	10	10	10	10	y	0.43	23	31	23	31	y	0.32	12	26	12	26	y	0.19	4	17	4	17	y	0.27	10	27	10	27	y	0.24	5	16	5	16	y	0.13	4	26	4	26	y	0.0049378176636565	4.45929990565061	up	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2956	chr11	58105996	58110290	+	58105996;58107827	58107782;58110290	ES	ENSMUST00000209079.2	known	0.72	27	10.5	27	11;10	y	0.63	6	3.5	6	3;4	y	0.73	34	12.5	34	14;11	y	0.70	49	21.0	49	18;24	y	0.58	9	6.5	9	4;9	y	0.50	24	24.0	24	27;21	y	0.64	14	8.0	14	10;6	y	0.60	39	26.0	39	25;27	y	0.022975308261662	3.10131936733091	up	ENSMUSG00000069874.8	Irgm2	chr11	protein_coding	immunity-related GTPase family M member 2
known_NIR_2990	chr11	59344471	59344704	+	59344471	59344654	A3SS	ENSMUST00000045279.13	known	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	0.91	10	1	10	1	n	0.89	8	1	8	1	n	0.80	8	2	8	2	y	0.89	8	1	8	1	n	0.0139791399743395	5.17826544218146	up	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
known_NIR_3052	chr11	61139308	61139688	-	61138867	61139688	A3SS	ENSMUST00000208086.2	known	0.23	6	20	6	20	y	0.26	5	14	5	14	y	0.25	2	6	2	6	n	0.19	3	13	3	13	y	0.15	4	23	4	23	y	0.17	8	40	8	40	y	0.10	3	28	3	28	y	0.14	2	12	2	12	y	0.00495481274390643	4.33052244625683	up	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3154	chr11	69548669	69549392	-	69548847	69549392	A3SS&ES	ENSMUST00000155200.8	known	0.08	15	183	15	183	y	0.05	9	176	9	176	y	0.06	11	183	11	183	y	0.07	16	221	16	221	y	0.06	11	169	11	169	y	0.04	10	270	10	270	y	0.04	10	220	10	220	y	0.03	6	228	6	228	y	0.0467970393586551	2.49615088301353	up	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3233	chr11	70499252	70499666	+	70499252;70499525	70499415;70499666	ES	ENSMUST00000072237.13	known	0.13	5	33.5	5	40;27	y	0.10	3	27.5	3	25;30	y	0.15	7	40.5	7	44;37	y	0.16	7	35.5	7	36;35	y	0.04	1	27.0	1	31;23	n	0.08	5	54.0	5	52;56	y	0.03	1	29.5	1	28;31	n	0.12	5	38.0	5	35;41	y	0.0388126775742367	2.76047261519354	up	ENSMUSG00000020827.19	Mink1	chr11	protein_coding	misshapen-like kinase 1 (zebrafish)
known_NIR_3475	chr11	83746929	83752620	+	83746929	83752542	A3SS	ENSMUST00000021016.10	known	0.38	8	13	8	13	y	0.41	7	10	7	10	y	0.29	14	34	14	34	y	0.35	7	13	7	13	y	0.17	8	40	8	40	y	0.24	8	25	8	25	y	0.30	9	21	9	21	y	0.19	7	29	7	29	y	0.0144224827600546	3.42351355519252	up	ENSMUSG00000020679.12	Hnf1b	chr11	protein_coding	HNF1 homeobox B
known_NIR_3521	chr11	87479678	87480001	+	87479678	87479794	3pMXE	ENSMUST00000133202.3	known	0.17	2	10	2	10	y	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.19	3	13	3	13	y	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.04	1	22	1	22	n	0.05	1	21	1	21	n	0.00135058064142222	5.6300215680886	up	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3522	chr11	87479678	87480001	+	87479678;87479911	87479794;87480001	ES	ENSMUST00000239011.2	known	0.13	2	13.0	2	10;16	y	0.16	3	16.0	3	12;20	y	0.17	1	5.0	1	6;4	n	0.17	3	14.5	3	13;16	y	0.08	1	11.0	1	9;13	n	0.07	1	13.0	1	11;15	n	0.05	1	21.0	1	22;20	n	0.04	1	26.5	1	21;32	n	0.000311306730607003	7.41457373113639	up	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3523	chr11	87479678	87480001	+	87479911	87480001	A5SS	ENSMUST00000132723.8	known	0.11	2	16	2	16	y	0.13	3	20	3	20	y	0.20	1	4	1	4	n	0.16	3	16	3	16	y	0.07	1	13	1	13	n	0.06	1	15	1	15	n	0.05	1	20	1	20	n	0.03	1	32	1	32	n	0.00971414652500828	4.56460474064909	up	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3584	chr11	95304967	95305158	+	95304957	95305158	A5SS	ENSMUST00000107724.9	known	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.36	5	9	5	9	y	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.0039511949095393	5.65269539557668	up	ENSMUSG00000057522.16	Spop	chr11	protein_coding	speckle-type BTB/POZ protein
known_NIR_3639	chr11	98655231	98659100	+	98655231	98658983	A3SS	ENSMUST00000064187.12	known	0.28	7	18	7	18	y	0.19	3	13	3	13	y	0.11	2	16	2	16	y	0.10	2	18	2	18	y	0.00	0	18	0	18	n	0.08	2	22	2	22	y	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.0286412720212101	3.23498319610315	up	ENSMUSG00000058756.14	Thra	chr11	protein_coding	thyroid hormone receptor alpha
known_NIR_3663	chr12	100745569	100752397	+	100745569	100795858	A3SS	ENSMUST00000069782.11	known	0.12	4	30	4	30	y	0.20	4	16	4	16	y	0.17	3	15	3	15	y	0.09	5	51	5	51	y	0.03	1	32	1	32	n	0.06	4	64	4	64	y	0.08	2	22	2	22	y	0.10	4	35	4	35	y	0.0439553750010944	2.68804090552477	up	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
known_NIR_3686	chr12	102709653	102709758	-	102709653	102723800	A5SS	ENSMUST00000174651.2	known	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.0154255242576139	3.62144283901586	up	ENSMUSG00000041716.8	Gm20604	chr12	protein_coding	predicted gene 20604
known_NIR_3692	chr12	103401832	103405660	+	103401832	103402822	3pMXE	ENSMUST00000148824.2	known	0.01	3	286	3	286	y	0.01	2	306	2	306	y	0.02	10	470	10	470	y	0.01	3	431	3	431	y	0.01	4	346	4	346	y	0.00	2	426	2	426	y	0.00	1	292	1	292	n	0.00	0	348	0	348	n	0.0300197452875444	2.82842712474619	up	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3796	chr12	111696546	111717621	+	111696546	111700101	3pMXE	ENSMUST00000040519.12	known	0.01	1	79	1	79	n	0.03	3	87	3	87	y	0.02	1	59	1	59	n	0.03	2	78	2	78	y	0.00	0	84	0	84	n	0.02	2	120	2	120	y	0.00	0	107	0	107	n	0.00	0	94	0	94	n	0.0448673860955738	2.52810291480115	up	ENSMUSG00000037787.15	Coa8	chr12	protein_coding	cytochrome c oxidase assembly factor 8
known_NIR_3928	chr12	3823640	3829619	+	3824610	3829619	5pMXE	ENSMUST00000174414.2	known	0.55	35	29	35	29	y	0.60	50	34	50	34	y	0.61	37	24	37	24	y	0.56	37	29	37	29	y	0.45	21	26	21	26	y	0.50	45	45	45	45	y	0.50	44	44	44	44	y	0.47	38	43	38	43	y	0.00217696317112531	5.22232967867094	up	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3954	chr12	4905392	4907807	+	4905392	4906846	3pMXE	ENSMUST00000220215.2	known	0.71	5	2	5	2	n	0.57	4	3	4	3	n	0.75	9	3	9	3	y	0.80	8	2	8	2	y	0.62	8	5	8	5	y	0.50	6	6	6	6	y	0.31	5	11	5	11	y	0.47	7	8	7	8	y	0.0300512835950156	2.88057797206567	up	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
known_NIR_3996	chr12	59177905	59182850	+	59176682	59182850	A5SS	ENSMUST00000175912.8	known	0.68	46	22	46	22	y	0.54	25	21	25	21	y	0.70	26	11	26	11	y	0.68	67	32	67	32	y	0.53	26	23	26	23	y	0.47	69	78	69	78	y	0.48	28	30	28	30	y	0.41	37	54	37	54	y	0.00948240328584119	3.99617028915644	up	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4142	chr12	80996378	80996491	+	80996378	80996494	A3SS	ENSMUST00000094693.11	known	0.18	117	522	117	522	y	0.21	141	536	141	536	y	0.22	139	479	139	479	y	0.20	121	471	121	471	y	0.17	123	614	123	614	y	0.16	155	811	155	811	y	0.19	151	655	151	655	y	0.16	159	825	159	825	y	0.0273107830256495	2.93141950921103	up	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4181	chr12	83679191	83689403	+	83685965	83689403	A5SS&ES	ENSMUST00000182004.8	known	0.94	15	1	15	1	n	1.00	7	0	7	0	n	0.96	23	1	23	1	n	0.78	18	5	18	5	y	0.74	14	5	14	5	y	0.81	22	5	22	5	y	0.79	11	3	11	3	y	0.67	16	8	16	8	y	0.0322729569120368	2.91304347826087	up	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4187	chr12	83685965;83689293	83689176;83689403	+	83685965	83689403	cassetteExon	ENSMUST00000182004.8	known	0.91	10.0	1	7;13	1	n	1.00	5.0	0	4;6	0	n	0.95	18.0	1	12;24	1	n	0.63	8.5	5	10;7	5	y	0.41	3.5	5	2;5	5	y	0.71	12.0	5	7;17	5	y	0.40	2.0	3	1;3	3	n	0.47	7.0	8	3;11	8	y	0.0148063734074405	3.40498956939793	up	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4293	chr12	8822511	8839407	+	8821701	8839407	A5SS	ENSMUST00000020911.14	known	0.12	63	465	63	465	y	0.11	35	285	35	285	y	0.12	88	634	88	634	y	0.11	66	513	66	513	y	0.08	29	328	29	328	y	0.09	50	485	50	485	y	0.09	36	381	36	381	y	0.08	54	603	54	603	y	0.000324974679271083	7.34846922834954	up	ENSMUSG00000020592.15	Sdc1	chr12	protein_coding	syndecan 1
known_NIR_4306	chr12	98740578;98745526	98745367;98749841	+	98740578	98749841	cassetteExon	ENSMUST00000110104.10	known	0.44	21.5	27	43;0	27	n	0.49	22.5	23	45;0	23	n	0.62	34.0	21	68;0	21	n	0.54	28.0	24	56;0	24	n	0.36	19.5	34	39;0	34	n	0.44	38.0	49	76;0	49	n	0.34	20.0	38	40;0	38	n	0.45	32.0	39	64;0	39	n	0.0422411005140472	2.63767480669999	up	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4374	chr13	108189488	108228068	-	108189488;108217927	108217887;108228068	ES	ENSMUST00000163558.3	known	0.04	3	82.5	3	70;95	y	0.04	4	88.0	4	81;95	y	0.03	3	107.0	3	101;113	y	0.04	3	77.0	3	66;88	y	0.01	1	95.5	1	92;99	n	0.01	1	116.5	1	107;126	n	0.01	1	100.0	1	85;115	n	0.00	0	122.5	0	112;133	n	0.00014654258687457	8.48528137423857	up	ENSMUSG00000068184.8	Ndufaf2	chr13	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 2
known_NIR_4433	chr13	12262871	12265488	-	12262871;12264800	12264731;12265488	ES	ENSMUST00000099856.6	known	0.57	2	1.5	2	1;2	n	0.67	3	1.5	3	1;2	n	0.88	7	1.0	7	2;0	n	0.43	3	4.0	3	5;3	y	0.00	0	1.0	0	2;0	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	3;1	n	0.00	0	3.0	0	3;3	n	0.00668027708493538	6.7362327618153	up	ENSMUSG00000021311.10	Mtr	chr13	protein_coding	5-methyltetrahydrofolate-homocysteine methyltransferase
known_NIR_4701	chr13	53067097	53073037	-	53063351	53073037	A3SS	ENSMUST00000119311.8	known	0.94	33	2	33	2	y	0.85	22	4	22	4	y	0.97	28	1	28	1	n	0.91	31	3	31	3	y	0.79	22	6	22	6	y	0.80	28	7	28	7	y	0.83	34	7	34	7	y	0.86	36	6	36	6	y	0.0230067489470557	3.23877371429586	up	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4842	chr13	59950010;59950925	59950806;59953037	-	59950010	59953037	cassetteExon	ENSMUST00000071703.6	known	0.08	3.0	33	2;4	33	y	0.12	2.0	15	2;2	15	y	0.10	5.0	43	5;5	43	y	0.12	6.0	44	2;10	44	y	0.06	3.5	51	4;3	51	y	0.05	2.5	46	3;2	46	y	0.05	2.0	35	1;3	35	n	0.07	4.0	54	5;3	54	y	0.0090797977185607	4.43744398172068	up	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4918	chr13	67078287;67079722	67079670;67080999	-	67078287	67080999	cassetteExon	ENSMUST00000021991.11	known	0.04	1.0	23	2;0	23	n	0.03	1.0	35	1;1	35	n	0.02	1.0	41	2;0	41	n	0.05	1.0	19	1;1	19	n	0.00	0.0	35	0;0	35	n	0.00	0.0	64	0;0	64	n	0.00	0.0	23	0;0	23	n	0.01	0.5	37	0;1	37	n	0.0100549140365711	4.695048270345	up	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4926	chr13	67254376	67256513	-	67250845	67256513	A3SS	ENSMUST00000186303.7	known	1.00	11	0	11	0	n	0.92	12	1	12	1	n	1.00	7	0	7	0	n	0.94	17	1	17	1	n	0.94	15	1	15	1	n	0.76	16	5	16	5	y	0.84	16	3	16	3	y	0.87	20	3	20	3	y	0.0490677617070458	2.64097362278274	up	ENSMUSG00000100235.9	Gm28557	chr13	protein_coding	predicted gene 28557
known_NIR_4941	chr13	68733121	68733297	+	68732475	68733297	A5SS	ENSMUST00000222068.2	known	0.60	9	6	9	6	y	0.89	8	1	8	1	n	0.85	11	2	11	2	y	0.94	15	1	15	1	n	0.60	6	4	6	4	y	0.59	10	7	10	7	y	0.22	2	7	2	7	n	0.56	5	4	5	4	n	0.0338570159261076	2.76397553637731	up	ENSMUSG00000021532.12	Fastkd3	chr13	protein_coding	FAST kinase domains 3
known_NIR_4991	chr13	81806055	81813128	+	81806055	81813124	A3SS	ENSMUST00000224300.2	known	0.17	4	19	4	19	y	0.12	2	15	2	15	y	0.08	6	69	6	69	y	0.11	4	33	4	33	y	0.08	2	23	2	23	y	0.08	3	33	3	33	y	0.00	0	22	0	22	n	0.05	2	39	2	39	y	0.0440871117401844	2.53994634463571	up	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
known_NIR_5134	chr14	121835168	121837100	-	121835165	121837100	A3SS	ENSMUST00000212376.3	known	0.80	4	1	4	1	n	0.60	3	2	3	2	n	0.71	5	2	5	2	n	0.75	12	4	12	4	y	0.50	3	3	3	3	n	0.47	7	8	7	8	y	0.67	2	1	2	1	n	0.59	10	7	10	7	y	0.0446250208652754	2.53354848473999	up	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5200	chr14	20772647	20772964	+	20772647	20772896	A3SS	ENSMUST00000022358.9	known	0.04	2	44	2	44	y	0.07	4	56	4	56	y	0.03	3	84	3	84	y	0.06	4	62	4	62	y	0.00	0	44	0	44	n	0.00	0	51	0	51	n	0.04	2	45	2	45	y	0.00	0	43	0	43	n	0.0257240313441162	2.95419578350399	up	ENSMUSG00000021819.12	Zswim8	chr14	protein_coding	zinc finger SWIM-type containing 8
known_NIR_5448	chr14	40827217	40827469	+	40827217	40827304	A3SS	ENSMUST00000225720.2	known	0.25	187	553	187	553	y	0.31	172	381	172	381	y	0.29	256	626	256	626	y	0.27	306	819	306	819	y	0.25	182	554	182	554	y	0.22	303	1099	303	1099	y	0.24	171	549	171	549	y	0.25	355	1047	355	1047	y	0.0452098667788731	2.71746488194703	up	ENSMUSG00000037798.8	Mat1a	chr14	protein_coding	methionine adenosyltransferase I, alpha
known_NIR_5465	chr14	4198873	4199236	+	4198737	4199236	A5SS	ENSMUST00000080281.14	known	0.16	46	250	46	250	y	0.11	39	305	39	305	y	0.13	60	407	60	407	y	0.17	57	281	57	281	y	0.11	34	283	34	283	y	0.08	31	378	31	378	y	0.10	38	342	38	342	y	0.10	33	303	33	303	y	0.0385943756766683	2.97260216584117	up	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5544	chr14	52126854	52126985	+	52126674	52126985	A5SS	ENSMUST00000047899.13	known	0.28	11	29	11	29	y	0.21	8	30	8	30	y	0.33	4	8	4	8	y	0.21	8	31	8	31	y	0.13	2	13	2	13	y	0.15	7	40	7	40	y	0.21	5	19	5	19	y	0.14	5	31	5	31	y	0.0334677242158429	2.91214102869774	up	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5663	chr14	55841700;55842178	55841925;55842509	+	55841700	55842509	cassetteExon	ENSMUST00000130697.8	known	0.40	2.0	3	4;0	3	n	0.25	2.0	6	3;1	6	n	0.27	6.0	16	11;1	16	n	0.28	6.5	17	10;3	17	y	0.20	2.5	10	5;0	10	n	0.18	3.5	16	5;2	16	y	0.11	1.0	8	0;2	8	n	0.17	3.5	17	5;2	17	y	0.0195332471565003	3.45699575818819	up	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5772	chr14	66208393	66209181	+	66207348	66209181	A5SS	ENSMUST00000153460.8	known	0.04	8	185	8	185	y	0.06	10	144	10	144	y	0.05	11	203	11	203	y	0.04	9	242	9	242	y	0.03	6	186	6	186	y	0.02	7	337	7	337	y	0.01	2	203	2	203	y	0.04	12	279	12	279	y	0.0340084674736242	2.79976957577215	up	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5819	chr14	72836582	72840362	-	72836582	72889456	A5SS	ENSMUST00000089017.12	known	0.73	11	4	11	4	y	0.82	14	3	14	3	y	0.77	27	8	27	8	y	0.73	16	6	16	6	y	0.62	8	5	8	5	y	0.46	12	14	12	14	y	0.60	12	8	12	8	y	0.70	19	8	19	8	y	0.0359923560850701	3.08501450363406	up	ENSMUSG00000033487.15	Fndc3a	chr14	protein_coding	fibronectin type III domain containing 3A
known_NIR_5836	chr14	73391850	73392271	+	73391848	73392271	A5SS	ENSMUST00000163339.8	known	0.04	2	52	2	52	y	0.06	3	49	3	49	y	0.06	4	61	4	61	y	0.06	4	58	4	58	y	0.02	1	54	1	54	n	0.01	1	87	1	87	n	0.00	0	57	0	57	n	0.05	3	63	3	63	y	0.039550730787069	2.94058817645882	up	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5960	chr15	102109517	102110879	-	102097114	102110879	A3SS	ENSMUST00000230656.2	known	0.56	5	4	5	4	n	0.67	2	1	2	1	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	0.43	3	4	3	4	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.0121458136470847	3.58215147399091	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5961	chr15	102109517	102110879	-	102097397	102110879	A3SS	ENSMUST00000229043.2	known	0.15	5	29	5	29	y	0.09	2	21	2	21	y	0.13	5	33	5	33	y	0.08	3	33	3	33	y	0.08	3	33	3	33	y	0.05	2	41	2	41	y	0.00	0	35	0	35	n	0.06	3	44	3	44	y	0.0337372810436539	2.7406406388126	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_6005	chr15	102396712	102398190	+	102396712	102397211	3pMXE	ENSMUST00000230129.2	known	0.03	14	522	14	522	y	0.02	12	520	12	520	y	0.02	11	624	11	624	y	0.02	9	551	9	551	y	0.01	4	484	4	484	y	0.01	9	676	9	676	y	0.01	8	556	8	556	y	0.01	10	790	10	790	y	0.0153924380733023	5	up	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6043	chr15	10326631	10345744	+	10326631	10341860	A3SS&ES	ENSMUST00000145428.8	known	0.33	5	10	5	10	y	0.36	5	9	5	9	y	-	-	-	-	-	-	0.31	5	11	5	11	y	0.11	2	17	2	17	y	0.25	5	15	5	15	y	0.24	5	16	5	16	y	0.20	5	20	5	20	y	0.0180963189100198	3.80521195323595	up	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6092	chr15	27741365	27742458	-	27741365	27742390	5pMXE	ENSMUST00000227999.2	known	0.75	6	2	6	2	n	0.64	7	4	7	4	y	0.50	7	7	7	7	y	0.75	3	1	3	1	n	0.42	5	7	5	7	y	0.46	6	7	6	7	y	0.57	8	6	8	6	y	0.40	6	9	6	9	y	0.0369053331466188	2.80537225570232	up	ENSMUSG00000022263.11	Trio	chr15	protein_coding	triple functional domain (PTPRF interacting)
known_NIR_6116	chr15	3301649	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	known	0.65	26	14	26	14	y	0.76	25	8	25	8	y	0.81	26	6	26	6	y	0.64	27	15	27	15	y	0.59	16	11	16	11	y	0.50	23	23	23	23	y	0.64	23	13	23	13	y	0.57	26	20	26	20	y	0.0373046014145391	2.7544685102926	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6150	chr15	3581167	3612482	-	3418195	3612482	A3SS	ENSMUST00000160343.8	known	0.67	6	3	6	3	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.89	8	1	8	1	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.0249546678342478	3.46366434819114	up	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6341	chr15	75768768	75772981	-	75768768;75772611	75772540;75772981	ES	ENSMUST00000154584.9	known	0.31	123	275.0	123	244;306	y	0.31	133	299.5	133	302;297	y	0.36	166	297.5	166	288;307	y	0.30	112	264.0	112	253;275	y	0.27	86	236.0	86	240;232	y	0.25	110	330.5	110	303;358	y	0.28	121	305.0	121	297;313	y	0.28	128	329.5	128	321;338	y	0.0256233178356129	3.27326835353989	up	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6342	chr15	75768768	75772981	-	75772611	75772981	3pMXE	ENSMUST00000055220.7	known	0.29	123	306	123	306	y	0.31	133	297	133	297	y	0.35	166	307	166	307	y	0.29	112	275	112	275	y	0.27	86	232	86	232	y	0.24	110	358	110	358	y	0.28	121	313	121	313	y	0.27	128	338	128	338	y	0.042336665516253	2.71360210119987	up	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6364	chr15	75867173	75867676	+	75867173	75867635	3pMXE	ENSMUST00000161961.2	known	0.77	10	3	10	3	y	0.85	11	2	11	2	y	0.75	3	1	3	1	n	0.68	15	7	15	7	y	0.71	10	4	10	4	y	0.48	10	11	10	11	y	0.62	18	11	18	11	y	0.59	23	16	23	16	y	0.03598065951637	2.75744071634173	up	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
known_NIR_6404	chr15	76231989	76232096	-	76232007	76232096	A3SS	ENSMUST00000154477.8	known	0.69	11	5	11	5	y	0.50	9	9	9	9	y	1.00	8	0	8	0	n	0.60	6	4	6	4	y	0.33	3	6	3	6	n	0.39	7	11	7	11	y	0.47	9	10	9	10	y	0.00	0	9	0	9	n	0.0367639864627785	2.67684813810368	up	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6429	chr15	76384253	76384467	+	76384253	76384331	A3SS	ENSMUST00000228868.2	known	0.17	8	38	8	38	y	0.12	6	46	6	46	y	0.26	12	34	12	34	y	0.23	10	33	10	33	y	0.03	1	32	1	32	n	0.11	5	42	5	42	y	0.07	4	56	4	56	y	0.05	3	56	3	56	y	0.0167210191484757	3.65268466516861	up	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6430	chr15	76384253	76384467	+	76384253;76384396	76384331;76384467	ES	ENSMUST00000228757.2	known	0.21	8	31.0	8	38;24	y	0.13	6	39.0	6	46;32	y	0.31	12	27.0	12	34;20	y	0.28	10	26.0	10	33;19	y	0.03	1	31.0	1	32;30	n	0.12	5	36.0	5	42;30	y	0.08	4	47.0	4	56;38	y	0.06	3	48.5	3	56;41	y	0.020156506557424	3.61172894709184	up	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6642	chr15	83019590	83022333	-	83019590;83021755	83021669;83022333	ES	ENSMUST00000058793.14	known	0.13	5	34.0	5	36;32	y	0.11	3	24.0	3	20;28	y	0.11	5	40.5	5	38;43	y	0.05	2	40.0	2	36;44	y	0.03	1	33.5	1	20;47	n	0.02	1	61.5	1	53;70	n	0.03	1	28.0	1	23;33	n	0.06	3	51.5	3	35;68	y	0.024444082310131	3.35658556671309	up	ENSMUSG00000041815.15	Poldip3	chr15	protein_coding	polymerase (DNA-directed), delta interacting protein 3
known_NIR_6643	chr15	83019590	83022333	-	83021755	83022333	3pMXE	ENSMUST00000149802.2	known	0.14	5	32	5	32	y	0.10	3	28	3	28	y	0.10	5	43	5	43	y	0.04	2	44	2	44	y	0.02	1	47	1	47	n	0.01	1	70	1	70	n	0.03	1	33	1	33	n	0.04	3	68	3	68	y	0.0371183653922297	3.24037034920393	up	ENSMUSG00000041815.15	Poldip3	chr15	protein_coding	polymerase (DNA-directed), delta interacting protein 3
known_NIR_6871	chr16	13988355	14001340	+	13988355;13993303	13993155;14001340	ES	ENSMUST00000023359.13	known	0.05	2	34.5	2	40;29	y	0.08	4	43.5	4	40;47	y	0.04	2	50.5	2	49;52	y	0.05	3	58.0	3	54;62	y	0.00	0	41.0	0	42;40	n	0.04	3	68.0	3	68;68	y	0.00	0	41.5	0	48;35	n	0.02	1	51.0	1	50;52	n	0.0214358947332461	3.09838667696593	up	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6872	chr16	13988355	14001340	+	13993303	14001340	5pMXE	ENSMUST00000156041.2	known	0.06	2	29	2	29	y	0.08	4	47	4	47	y	0.04	2	52	2	52	y	0.05	3	62	3	62	y	0.00	0	40	0	40	n	0.04	3	68	3	68	y	0.00	0	35	0	35	n	0.02	1	52	1	52	n	0.0164585501848393	3.31280599255432	up	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_7047	chr16	20537419	20537574	+	20536744	20537574	A5SS	ENSMUST00000021405.8	known	0.04	2	47	2	47	y	0.05	2	38	2	38	y	0.09	3	31	3	31	y	0.09	4	41	4	41	y	0.00	0	26	0	26	n	0.06	3	45	3	45	y	0.02	1	50	1	50	n	0.00	0	49	0	49	n	0.0493485748360164	2.45973155641199	up	ENSMUSG00000021018.9	Polr2h	chr16	protein_coding	polymerase (RNA) II (DNA directed) polypeptide H
known_NIR_7126	chr16	23298890	23302145	-	23295154	23302145	A3SS	ENSMUST00000089883.7	known	0.05	6	126	6	126	y	0.05	5	93	5	93	y	0.04	7	190	7	190	y	0.04	7	170	7	170	y	0.02	2	129	2	129	y	0.02	4	185	4	185	y	0.03	4	132	4	132	y	0.02	4	182	4	182	y	0.00114013066076554	5.89188303637179	up	ENSMUSG00000022887.10	Masp1	chr16	protein_coding	mannan-binding lectin serine peptidase 1
known_NIR_7362	chr16	4772740	4773722	-	4771818	4773722	A3SS	ENSMUST00000023157.6	known	0.12	3	22	3	22	y	0.14	4	24	4	24	y	0.07	3	40	3	40	y	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.04	2	47	2	47	y	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.0124868389221995	4.02360874250657	up	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7493	chr16	90535557	90544412	+	90535557	90544263	A3SS	ENSMUST00000138984.8	known	0.98	271	5	271	5	y	0.97	213	6	213	6	y	0.97	502	15	502	15	y	0.98	222	5	222	5	y	0.96	187	8	187	8	y	0.96	262	12	262	12	y	0.96	258	12	258	12	y	0.97	198	6	198	6	y	0.0174670498044487	3.2732683535399	up	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7611	chr17	14109239;14111260	14111225;14116350	+	14109239	14116350	cassetteExon	ENSMUST00000170827.9	known	0.03	2.5	78	2;3	78	y	0.01	1.0	71	1;1	71	n	0.02	5.0	225	2;8	225	y	0.02	2.5	122	2;3	122	y	0.01	0.5	57	0;1	57	n	0.01	1.0	81	0;2	81	n	0.00	0.0	50	0;0	50	n	0.01	1.0	108	1;1	108	n	0.0478566196408534	2.61116483933547	up	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7648	chr17	22665874	22670060	+	22665874	22670078	A3SS	ENSMUST00000120222.8	known	0.14	3	18	3	18	y	0.23	7	23	7	23	y	0.11	2	16	2	16	y	0.25	10	30	10	30	y	0.00	0	24	0	24	n	0.03	1	36	1	36	n	0.00	0	17	0	17	n	0.15	4	23	4	23	y	0.03171528274408	2.78861069609867	up	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
known_NIR_7843	chr17	26311126;26311531	26311481;26312591	-	26311126	26312591	cassetteExon	ENSMUST00000236967.2	known	0.17	2.5	12	2;3	12	y	0.17	2.0	10	1;3	10	n	-	-	-	-	-	-	0.10	1.5	14	1;2	14	n	0.00	0.0	7	0;0	7	n	0.00	0.0	13	0;0	13	n	0.11	1.5	12	0;3	12	n	0.05	0.5	10	0;1	10	n	0.0289046039731788	3.04416956258876	up	ENSMUSG00000024177.10	Nme4	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 4
known_NIR_7907	chr17	27775723	27778507	+	27775685	27778507	A5SS	ENSMUST00000232265.2	known	0.23	13	44	13	44	y	0.27	16	43	16	43	y	0.25	10	30	10	30	y	0.33	13	26	13	26	y	0.20	9	35	9	35	y	0.18	16	71	16	71	y	0.24	11	34	11	34	y	0.17	9	44	9	44	y	0.0379031009879913	2.72809051831243	up	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7925	chr17	28195691	28204040	+	28195691;28197463	28197401;28204040	ES	ENSMUST00000114842.9	known	0.91	5	0.5	5	0;1	n	0.80	4	1.0	4	2;0	n	0.50	4	4.0	4	4;4	y	0.88	11	1.5	11	2;1	n	0.00	0	0.5	0	0;1	n	0.56	5	4.0	5	3;5	y	0.00	0	1.5	0	2;1	n	0.56	7	5.5	7	6;5	y	0.0480063672110039	2.63542693953221	up	ENSMUSG00000024219.17	Anks1	chr17	protein_coding	ankyrin repeat and SAM domain containing 1
known_NIR_8133	chr17	33149636	33165779	-	33160174	33165779	3pMXE	ENSMUST00000146718.2	known	0.01	1	145	1	145	n	0.02	2	98	2	98	y	0.01	1	98	1	98	n	0.02	4	179	4	179	y	0.00	0	170	0	170	n	0.00	1	214	1	214	n	0.00	0	166	0	166	n	0.01	2	195	2	195	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8156	chr17	33757686	33762172	+	33757669	33762172	A5SS	ENSMUST00000173931.8	known	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.75	3	1	3	1	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.0338185917731705	2.74205865992291	up	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8393	chr17	37163585	37167094	+	37163585;37165193	37165176;37167094	ES	ENSMUST00000130367.8	known	0.84	41	8.0	41	9;7	y	0.79	24	6.5	24	9;4	y	0.84	31	6.0	31	6;6	y	0.77	48	14.5	48	17;12	y	0.70	33	14.0	33	16;12	y	0.75	55	18.5	55	20;17	y	0.71	39	16.0	39	16;16	y	0.67	33	16.0	33	19;13	y	0.00562148477714992	4.22134907178567	up	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8430	chr17	45903187	45906408	-	45903187	45910399	A5SS	ENSMUST00000171847.8	known	0.61	17	11	17	11	y	0.58	15	11	15	11	y	0.60	12	8	12	8	y	0.55	21	17	21	17	y	0.50	11	11	11	11	y	0.47	22	25	22	25	y	0.55	16	13	16	13	y	0.51	29	28	29	28	y	0.0114627873373886	3.66187142395543	up	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8616	chr17	66090663	66110206	+	66090663	66110155	A3SS	ENSMUST00000161324.8	known	0.71	12	5	12	5	y	0.73	11	4	11	4	y	0.83	20	4	20	4	y	0.67	18	9	18	9	y	0.67	4	2	4	2	n	0.56	14	11	14	11	y	0.50	7	7	7	7	y	0.38	8	13	8	13	y	0.0326435457562471	2.99046515935575	up	ENSMUSG00000061950.18	Ppp4r1	chr17	protein_coding	protein phosphatase 4, regulatory subunit 1
known_NIR_8733	chr17	80533193	80535167	+	80533193	80533954	3pMXE	ENSMUST00000156869.2	known	0.93	26	2	26	2	y	0.91	31	3	31	3	y	0.98	48	1	48	1	n	0.92	24	2	24	2	y	0.71	15	6	15	6	y	0.87	34	5	34	5	y	0.86	32	5	32	5	y	0.81	26	6	26	6	y	0.0363240071763431	3.08060360596347	up	ENSMUSG00000055760.13	Gemin6	chr17	protein_coding	gem nuclear organelle associated protein 6
known_NIR_8888	chr18	32064603	32074690	+	32064603	32074793	A3SS	ENSMUST00000025254.9	known	0.05	7	125	7	125	y	0.09	10	103	10	103	y	0.07	5	62	5	62	y	0.09	10	106	10	106	y	0.03	2	76	2	76	y	0.05	6	119	6	119	y	0.03	3	103	3	103	y	0.06	4	64	4	64	y	0.0389814444523074	2.67223596832737	up	ENSMUSG00000024395.10	Lims2	chr18	protein_coding	LIM and senescent cell antigen like domains 2
known_NIR_8984	chr18	35571433;35626286	35625912;35631844	-	35571433	35631844	cassetteExon	ENSMUST00000235619.2	known	0.03	6.0	175	3;9	175	y	0.04	5.0	130	4;6	130	y	0.02	4.0	203	4;4	203	y	0.03	6.0	190	8;4	190	y	0.01	2.0	162	0;4	162	n	0.01	2.5	232	2;3	232	y	0.02	3.0	179	5;1	179	n	0.02	3.5	189	3;4	189	y	0.0273393097919095	3	up	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_9193	chr18	60965067	60965499	-	60965067;60965381	60965238;60965499	ES	ENSMUST00000175934.8	known	0.25	2	6.0	2	9;3	y	0.17	1	5.0	1	2;8	n	0.20	2	8.0	2	10;6	y	0.25	2	6.0	2	2;10	y	0.00	0	5.0	0	6;4	n	0.12	1	7.5	1	8;7	n	0.00	0	6.0	0	5;7	n	0.00	0	6.0	0	2;10	n	0.00305686347467664	5.22127498216848	up	ENSMUSG00000024613.17	Tcof1	chr18	protein_coding	treacle ribosome biogenesis factor 1
known_NIR_9307	chr18	80296608	80298587	+	80296608;80297690	80297556;80298587	ES	ENSMUST00000131780.8	known	0.21	2	7.5	2	12;3	y	0.33	9	18.0	9	36;0	n	0.19	2	8.5	2	17;0	n	0.21	3	11.0	3	21;1	n	0.12	2	15.0	2	28;2	y	0.11	2	16.5	2	31;2	y	0.05	1	19.0	1	36;2	n	0.19	2	8.5	2	15;2	y	0.0344479503381657	2.73335899750557	up	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9318	chr18	80779364	80781868	-	80779364;80780059	80780027;80781868	ES	ENSMUST00000091790.5	known	0.80	53	13.5	53	16;11	y	0.90	64	7.5	64	11;4	y	0.92	51	4.5	51	6;3	y	0.88	49	6.5	49	6;7	y	0.78	38	10.5	38	12;9	y	0.81	54	13.0	54	11;15	y	0.81	52	12.5	52	14;11	y	0.70	53	22.5	53	21;24	y	0.0353450102145515	2.7050089040023	up	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9319	chr18	80779364	80781868	-	80780059	80781868	3pMXE	ENSMUST00000225218.2	known	0.83	53	11	53	11	y	0.94	64	4	64	4	y	0.94	51	3	51	3	y	0.88	49	7	49	7	y	0.81	38	9	38	9	y	0.78	54	15	54	15	y	0.83	52	11	52	11	y	0.69	53	24	53	24	y	0.0265353906177049	2.94306882952784	up	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9374	chr19	10509363;10509698	10509622;10510184	+	10509363;10509560	10509495;10510184	MXE	ENSMUST00000236206.2	known	0.76	6.5	2.0	6;7	1;3	n	0.70	3.5	1.5	5;2	2;1	n	0.73	9.5	3.5	11;8	3;4	y	0.45	4.5	5.5	2;7	5;6	y	0.50	3.5	3.5	3;4	0;7	n	0.43	3.0	4.0	3;3	4;4	y	0.25	1.5	4.5	0;3	4;5	n	0.25	2.5	7.5	1;4	8;7	n	0.0196329244649089	3.16997322822659	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9469	chr19	28989453	28993801	+	28989453	28990188	3pMXE	ENSMUST00000225310.2	known	0.11	3	24	3	24	y	0.05	1	20	1	20	n	0.14	3	19	3	19	y	0.13	3	20	3	20	y	0.04	1	24	1	24	n	0.00	0	30	0	30	n	0.04	1	24	1	24	n	0.04	1	24	1	24	n	0.0225618127218094	3.44444444444444	up	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9470	chr19	28989453	28993801	+	28989453	28993406	A3SS	ENSMUST00000050148.5	known	0.07	3	40	3	40	y	0.03	1	37	1	37	n	0.05	3	58	3	58	y	0.07	3	42	3	42	y	0.03	1	39	1	39	n	0.00	0	56	0	56	n	0.02	1	50	1	50	n	0.02	1	51	1	51	n	0.0209810417618345	3.27326835353989	up	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9627	chr19	4108841	4109424	-	4108841	4109259	5pMXE	ENSMUST00000076451.7	known	0.13	7	46	7	46	y	0.20	10	39	10	39	y	0.17	20	96	20	96	y	0.23	11	37	11	37	y	0.12	2	15	2	15	y	0.10	8	70	8	70	y	0.06	2	33	2	33	y	0.10	4	36	4	36	y	0.0175672974202301	3.52953638862728	up	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
known_NIR_9628	chr19	4108841	4109424	-	4108841;4109294	4109259;4109424	ES	ENSMUST00000189808.7	known	0.15	7	41.0	7	46;36	y	0.22	10	34.5	10	39;30	y	0.19	20	83.5	20	96;71	y	0.26	11	31.5	11	37;26	y	0.12	2	14.0	2	15;13	y	0.12	8	59.5	8	70;49	y	0.07	2	28.0	2	33;23	y	0.11	4	31.0	4	36;26	y	0.0152034101033667	3.82546027838003	up	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
known_NIR_10103	chr19	8817932	8818472	+	8817148	8818472	A5SS	ENSMUST00000237654.2	known	0.77	50	15	50	15	y	0.79	37	10	37	10	y	0.82	40	9	40	9	y	0.83	53	11	53	11	y	0.65	37	20	37	20	y	0.65	60	33	60	33	y	0.74	51	18	51	18	y	0.75	56	19	56	19	y	0.0230570080490628	3.41414523200145	up	ENSMUSG00000118124.2	Gm50139	chr19	protein_coding	predicted gene, 50139
known_NIR_10224	chr2	119491140	119493074	-	119491140	119493261	A5SS	ENSMUST00000110802.8	known	0.15	3	17	3	17	y	0.22	2	7	2	7	n	0.23	3	10	3	10	y	0.20	5	20	5	20	y	0.09	2	20	2	20	y	0.07	2	25	2	25	y	0.00	0	11	0	11	n	0.17	4	20	4	20	y	0.03501303401777	2.9945823883556	up	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
known_NIR_10347	chr2	126500497;126505008	126504911;126517276	-	126500497	126517276	cassetteExon	ENSMUST00000110425.9	known	0.33	2.5	5	5;0	5	n	0.29	2.0	5	3;1	5	n	0.30	3.0	7	6;0	7	n	0.26	2.5	7	5;0	7	n	0.04	0.5	11	1;0	11	n	0.20	3.5	14	4;3	14	y	0.14	1.0	6	2;0	6	n	0.16	2.5	13	3;2	13	y	0.0120674572503845	4.32801424640367	up	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
known_NIR_10375	chr2	12983224	12985104	+	12983428	12985104	A5SS	ENSMUST00000154269.7	known	0.08	16	197	16	197	y	0.07	13	180	13	180	y	0.09	12	128	12	128	y	0.09	21	216	21	216	y	0.04	7	187	7	187	y	0.05	13	253	13	253	y	0.08	16	176	16	176	y	0.05	17	305	17	305	y	0.0419030225531744	2.77910133951951	up	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10519	chr2	152672022	152672306	-	152672022	152673523	A5SS	ENSMUST00000007803.12	known	0.95	18	1	18	1	n	0.81	25	6	25	6	y	0.90	38	4	38	4	y	0.75	27	9	27	9	y	0.70	14	6	14	6	y	0.60	30	20	30	20	y	0.56	20	16	20	16	y	0.71	24	10	24	10	y	0.0118834431526149	3.61255517197042	up	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10567	chr2	155423953	155434614	-	155423953	155429362	5pMXE	ENSMUST00000157008.8	known	0.03	4	121	4	121	y	0.04	4	107	4	107	y	0.05	10	209	10	209	y	0.03	5	158	5	158	y	0.03	3	100	3	100	y	0.01	3	202	3	202	y	0.01	2	151	2	151	y	0.02	5	227	5	227	y	0.0254739283431626	2.95419578350398	up	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10568	chr2	155423953	155434614	-	155423953;155429496	155429362;155434614	ES	ENSMUST00000079691.13	known	0.05	4	84.5	4	121;48	y	0.05	4	83.0	4	107;59	y	0.06	10	162.5	10	209;116	y	0.04	5	116.0	5	158;74	y	0.04	3	72.0	3	100;44	y	0.02	3	142.5	3	202;83	y	0.02	2	109.0	2	151;67	y	0.03	5	160.0	5	227;93	y	0.0121941868183737	3.57623736407562	up	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10684	chr2	164305288	164309068	+	164305288	164306278	3pMXE	ENSMUST00000109352.8	known	0.02	4	201	4	201	y	0.01	2	225	2	225	y	0.02	6	366	6	366	y	0.01	1	196	1	196	n	0.01	2	157	2	157	y	0.01	3	281	3	281	y	0.00	1	215	1	215	n	0.00	1	217	1	217	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
known_NIR_10821	chr2	176400217	176403674	+	176400189	176403674	A5SS	ENSMUST00000141122.2	known	0.82	9	2	9	2	y	1.00	9	0	9	0	n	0.82	9	2	9	2	y	0.80	16	4	16	4	y	0.71	12	5	12	5	y	0.67	8	4	8	4	y	0.50	4	4	4	4	n	0.75	9	3	9	3	y	0.031908706684337	2.80200224724002	up	ENSMUSG00000078879.11	Zfp973	chr2	protein_coding	zinc finger protein 973
known_NIR_11087	chr2	26845581	26848491	-	26845581	26846301	5pMXE	ENSMUST00000123126.2	known	0.08	6	72	6	72	y	0.06	3	44	3	44	y	0.05	3	52	3	52	y	0.02	1	41	1	41	n	0.02	1	40	1	40	n	0.03	2	75	2	75	y	0.00	0	56	0	56	n	0.00	0	61	0	61	n	0.0413737459272578	2.74397736228014	up	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
known_NIR_11088	chr2	26845581	26848491	-	26845581;26846375	26846301;26848491	ES	ENSMUST00000064244.11	known	0.08	6	67.5	6	72;63	y	0.07	3	43.0	3	44;42	y	0.05	3	52.0	3	52;52	y	0.03	1	37.0	1	41;33	n	0.03	1	34.0	1	40;28	n	0.03	2	67.0	2	75;59	y	0.00	0	51.5	0	56;47	n	0.00	0	55.0	0	61;49	n	0.0250849044205728	3.02097927657137	up	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
known_NIR_11161	chr2	30235951	30236365	-	30235951	30236071	5pMXE	ENSMUST00000142689.2	known	0.95	42	2	42	2	y	0.94	47	3	47	3	y	0.94	46	3	46	3	y	0.95	55	3	55	3	y	0.89	41	5	41	5	y	0.83	76	16	76	16	y	0.86	63	10	63	10	y	0.83	58	12	58	12	y	0.00634165904686252	6.31456937627316	up	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11162	chr2	30235951	30236365	-	30235951;30236085	30236071;30236365	ES	ENSMUST00000100215.11	known	0.94	42	2.5	42	2;3	y	0.93	47	3.5	47	3;4	y	0.93	46	3.5	46	3;4	y	0.96	55	2.5	55	3;2	y	0.90	41	4.5	41	5;4	y	0.86	76	12.0	76	16;8	y	0.87	63	9.5	63	10;9	y	0.83	58	11.5	58	12;11	y	0.00773296978767649	4.66628262628691	up	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11341	chr2	37474118	37476522	-	37470818	37476522	A3SS	ENSMUST00000183690.8	known	0.98	54	1	54	1	n	0.95	40	2	40	2	y	1.00	80	0	80	0	n	0.98	46	1	46	1	n	0.96	47	2	47	2	y	0.90	72	8	72	8	y	0.94	63	4	63	4	y	0.90	46	5	46	5	y	0.0320317767551924	2.88457184292247	up	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
known_NIR_11506	chr2	69553707;69561924	69561835;69562090	+	69553707	69562090	cassetteExon	ENSMUST00000040915.15	known	0.33	2.5	5	2;3	5	y	0.57	4.0	3	7;1	3	n	0.35	7.0	13	5;9	13	y	0.37	3.5	6	1;6	6	n	0.29	2.0	5	0;4	5	n	0.18	3.0	14	3;3	14	y	0.20	3.5	14	5;2	14	y	0.19	2.5	11	2;3	11	y	0.0336598717615719	3.10960493586289	up	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
known_NIR_11517	chr2	69821981	69824020	+	69821969	69824020	A5SS	ENSMUST00000055758.16	known	0.65	46	25	46	25	y	0.64	30	17	30	17	y	0.51	44	42	44	42	y	0.66	71	36	71	36	y	0.49	37	39	37	39	y	0.47	57	64	57	64	y	0.54	43	37	43	37	y	0.49	43	44	43	44	y	0.0367507268391061	3.07030007198086	up	ENSMUSG00000044308.18	Ubr3	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 3
known_NIR_11537	chr2	71283742;71331213	71331123;71337129	+	71283742	71337129	cassetteExon	ENSMUST00000037210.9	known	0.18	14.0	65	9;19	65	y	0.19	8.5	36	7;10	36	y	0.28	19.0	49	7;31	49	y	0.24	19.0	59	13;25	59	y	0.18	13.5	60	12;15	60	y	0.15	13.5	74	12;15	74	y	0.12	8.0	58	4;12	58	y	0.16	10.5	54	5;16	54	y	0.0491528372223229	2.65366089914757	up	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
known_NIR_11702	chr2	91509774	91510688	-	91509774;91510342	91510265;91510688	ES	ENSMUST00000076803.12	known	0.04	3	66.5	3	63;70	y	0.03	2	78.0	2	77;79	y	0.04	6	147.0	6	135;159	y	0.05	4	82.0	4	85;79	y	0.01	1	66.5	1	65;68	n	0.03	3	87.0	3	90;84	y	0.00	0	76.0	0	68;84	n	0.03	3	93.0	3	94;92	y	0.0498781845442338	2.63493019696104	up	ENSMUSG00000027244.15	Atg13	chr2	protein_coding	autophagy related 13
known_NIR_11767	chr3	102970769	102971550	+	102970769;102971473	102971432;102971550	ES	ENSMUST00000029445.13	known	0.09	4	40.0	4	37;43	y	0.06	2	32.0	2	31;33	y	0.03	2	76.5	2	77;76	y	0.04	2	48.5	2	46;51	y	0.02	1	40.0	1	39;41	n	0.00	0	53.0	0	50;56	n	0.00	0	52.5	0	54;51	n	0.00	0	63.5	0	71;56	n	0.0257884404742018	3.53553390593274	up	ENSMUSG00000027852.15	Nras	chr3	protein_coding	neuroblastoma ras oncogene
known_NIR_11805	chr3	106440818	106446759	-	106440818	106446506	A5SS	ENSMUST00000068301.11	known	0.09	11	112	11	112	y	0.12	10	70	10	70	y	0.07	8	112	8	112	y	0.09	12	125	12	125	y	0.00	0	88	0	88	n	0.06	9	150	9	150	y	0.00	0	116	0	116	n	0.07	11	154	11	154	y	0.0417228089029287	2.78994332985166	up	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11810	chr3	106455236;106457991	106457815;106459472	+	106455236	106459472	cassetteExon	ENSMUST00000067630.13	known	0.02	1.5	86	3;0	86	n	0.03	2.0	74	3;1	74	n	0.05	5.0	98	6;4	98	y	0.03	3.5	104	0;7	104	n	0.01	0.5	85	1;0	85	n	0.01	1.5	117	0;3	117	n	0.01	0.5	95	0;1	95	n	0.02	1.5	89	0;3	89	n	0.0428004269752684	2.95419578350399	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11818	chr3	107577636	107579358	-	107578560	107579358	3pMXE	ENSMUST00000153623.2	known	0.08	11	119	11	119	y	0.08	5	58	5	58	y	0.05	8	161	8	161	y	0.05	8	141	8	141	y	0.04	4	100	4	100	y	0.05	8	142	8	142	y	0.02	2	82	2	82	y	0.02	4	165	4	165	y	0.0303554680818533	2.8368325730679	up	ENSMUSG00000027893.15	Ahcyl1	chr3	protein_coding	S-adenosylhomocysteine hydrolase-like 1
known_NIR_11835	chr3	107988447	107993534	-	107988447	107992563	5pMXE	ENSMUST00000136712.8	known	0.84	16	3	16	3	y	0.75	12	4	12	4	y	0.75	30	10	30	10	y	0.69	22	10	22	10	y	0.67	14	7	14	7	y	0.63	12	7	12	7	y	0.62	10	6	10	6	y	0.65	17	9	17	9	y	0.027524515869215	3.5006893970797	up	ENSMUSG00000027889.18	Ampd2	chr3	protein_coding	adenosine monophosphate deaminase 2
known_NIR_11841	chr3	108479064	108480196	+	108479068	108480196	A5SS	ENSMUST00000131814.8	known	1.00	47	0	47	0	n	1.00	23	0	23	0	n	1.00	19	0	19	0	n	1.00	29	0	29	0	n	0.96	26	1	26	1	n	0.94	31	2	31	2	y	0.92	34	3	34	3	y	0.97	31	1	31	1	n	0.0178540164548452	4.73536997641783	up	ENSMUSG00000048100.14	Taf13	chr3	protein_coding	TATA-box binding protein associated factor 13
known_NIR_11843	chr3	108479429	108480196	+	108479068	108480196	A5SS	ENSMUST00000131814.8	known	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.80	8	2	8	2	y	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.0304995158840379	3.87135740854289	up	ENSMUSG00000048100.14	Taf13	chr3	protein_coding	TATA-box binding protein associated factor 13
known_NIR_11915	chr3	122305914	122306000	+	122304971	122306000	A5SS	ENSMUST00000029766.9	known	0.15	5	29	5	29	y	0.11	4	33	4	33	y	0.16	6	31	6	31	y	0.08	6	70	6	70	y	0.00	0	55	0	55	n	0.05	4	70	4	70	y	0.03	2	57	2	57	y	0.09	7	71	7	71	y	0.0205219898268085	3.12285747448873	up	ENSMUSG00000028121.9	Bcar3	chr3	protein_coding	breast cancer anti-estrogen resistance 3
known_NIR_12003	chr3	142017975	142020167	-	142018302	142020167	A3SS	ENSMUST00000029941.16	known	0.20	5	20	5	20	y	0.18	2	9	2	9	y	0.16	4	21	4	21	y	0.10	3	27	3	27	y	0.08	2	22	2	22	y	0.02	1	50	1	50	n	0.03	1	34	1	34	n	0.00	0	51	0	51	n	0.00407638904977799	4.63636363636364	up	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12356	chr3	87950486;87950908	87950774;87958469	+	87950486	87958469	cassetteExon	ENSMUST00000029707.13	known	0.07	1.0	14	1;1	14	n	0.12	2.0	15	1;3	15	n	0.05	2.0	39	2;2	39	y	0.07	1.0	13	1;1	13	n	0.02	0.5	21	1;0	21	n	0.00	0.0	12	0;0	12	n	0.02	0.5	20	0;1	20	n	0.04	1.0	23	1;1	23	n	0.0220584809396007	3.3789445374333	up	ENSMUSG00000028069.17	Gpatch4	chr3	protein_coding	G patch domain containing 4
known_NIR_12390	chr3	88362153;88363099	88362855;88363441	-	88362153	88363441	cassetteExon	ENSMUST00000123753.8	known	0.75	50.0	17	97;3	17	y	0.75	44.0	15	87;1	15	n	0.76	48.0	15	94;2	15	y	0.78	62.0	17	123;1	17	n	0.65	41.0	22	82;0	22	n	0.73	71.5	26	140;3	26	y	0.65	28.0	15	53;3	15	y	0.66	63.5	33	125;2	33	y	0.0146998730236698	4.25481471698382	up	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12726	chr4	108022858	108027058	+	108026979	108027058	5pMXE	ENSMUST00000135718.8	known	0.02	9	472	9	472	y	0.03	14	451	14	451	y	0.02	9	398	9	398	y	0.03	13	485	13	485	y	0.02	11	449	11	449	y	0.01	7	714	7	714	y	0.01	5	547	5	547	y	0.02	9	561	9	561	y	0.0498252627805767	2.44948974278318	up	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12973	chr4	128635877	128637147	+	128621663	128637147	A5SS	ENSMUST00000106079.10	known	0.18	2	9	2	9	y	0.36	5	9	5	9	y	0.21	7	26	7	26	y	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.09	1	10	1	10	n	0.0424042504497881	2.97671655082378	up	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12974	chr4	128635877	128637147	+	128621992	128637147	A5SS	ENSMUST00000133439.8	known	0.33	2	4	2	4	n	0.62	5	3	5	3	n	0.39	7	11	7	11	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.0179353483742373	3.49063031035668	up	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_13159	chr4	134260063	134262216	-	134260063	134262561	A5SS	ENSMUST00000116279.10	known	0.10	5	44	5	44	y	0.08	4	48	4	48	y	0.12	8	58	8	58	y	0.12	7	53	7	53	y	0.09	5	52	5	52	y	0.08	5	57	5	57	y	0.04	2	49	2	49	y	0.06	4	64	4	64	y	0.0437193421017436	2.55996055794858	up	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
known_NIR_13235	chr4	137944051;137949029	137948837;137949400	+	137944051	137949400	cassetteExon	ENSMUST00000097836.10	known	0.71	12.5	5	24;1	5	n	0.67	14.0	7	21;7	7	y	0.64	16.0	9	27;5	9	y	0.63	25.5	15	44;7	15	y	0.48	14.5	16	25;4	16	y	0.56	28.5	22	54;3	22	y	0.64	17.5	10	33;2	10	y	0.48	18.5	20	34;3	20	y	0.0410798289511203	2.89574373540561	up	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13239	chr4	137944605	137949400	+	137944051	137949400	A5SS	ENSMUST00000097836.10	known	0.17	1	5	1	5	n	0.30	3	7	3	7	y	0.31	4	9	4	9	y	0.12	2	15	2	15	y	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.09	1	10	1	10	n	0.13	3	20	3	20	y	0.0293787295640865	2.95187530888349	up	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13302	chr4	147945470	147945811	-	147945542	147945811	A3SS	ENSMUST00000030886.15	known	0.14	8	49	8	49	y	0.13	9	60	9	60	y	0.18	8	36	8	36	y	0.18	6	27	6	27	y	0.06	4	58	4	58	y	0.11	8	66	8	66	y	0.13	10	66	10	66	y	0.09	7	67	7	67	y	0.0239906292479469	3.01574813970021	up	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
known_NIR_13337	chr4	148701500	148702023	-	148701301	148702023	A3SS	ENSMUST00000188134.7	known	0.10	6	56	6	56	y	0.13	7	47	7	47	y	0.07	3	41	3	41	y	0.05	2	42	2	42	y	0.04	2	49	2	49	y	0.00	0	70	0	70	n	0.06	4	58	4	58	y	0.00	0	61	0	61	n	0.0358509930358226	2.7116307227332	up	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13462	chr4	156028470	156033464	+	156030874	156033464	A5SS&ES	ENSMUST00000024056.10	known	0.10	10	87	10	87	y	0.14	11	65	11	65	y	0.11	19	153	19	153	y	0.10	8	69	8	69	y	0.04	3	72	3	72	y	0.10	11	101	11	101	y	0.07	8	103	8	103	y	0.07	8	115	8	115	y	0.0356798545167757	2.74574770049664	up	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13579	chr4	41773350	41773465	-	41771213	41773465	A3SS	ENSMUST00000151142.8	known	0.80	4	1	4	1	n	0.78	7	2	7	2	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.57	4	3	4	3	n	0.57	4	3	4	3	n	0.00571694908984649	4.2804729854996	up	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13590	chr4	43037206	43039815	-	43037206	43045648	A5SS	ENSMUST00000107956.8	known	0.40	2	3	2	3	n	0.75	6	2	6	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.27	4	11	4	11	y	0.0406646547408412	2.66875695060897	up	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13684	chr4	53840783	53847477	+	53840783	53848866	A3SS	ENSMUST00000030127.13	known	0.02	3	193	3	193	y	0.01	2	218	2	218	y	0.02	6	309	6	309	y	0.01	3	219	3	219	y	0.00	0	163	0	163	n	0.01	3	302	3	302	y	0.01	2	205	2	205	y	0.00	1	289	1	289	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000028420.14	Tmem38b	chr4	protein_coding	transmembrane protein 38B
known_NIR_13732	chr4	62618050	62618235	+	62618131	62618235	A5SS	ENSMUST00000125369.8	known	0.13	2	13	2	13	y	0.08	1	12	1	12	n	0.05	1	18	1	18	n	0.05	1	20	1	20	n	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.0429965021282737	2.59237923682606	up	ENSMUSG00000059810.19	Rgs3	chr4	protein_coding	regulator of G-protein signaling 3
known_NIR_13773	chr4	82241947	82245966	-	82215048	82245966	A3SS	ENSMUST00000064770.9	known	0.62	5	3	5	3	n	0.56	9	7	9	7	y	0.64	14	8	14	8	y	0.69	27	12	27	12	y	0.53	9	8	9	8	y	0.45	15	18	15	18	y	0.54	13	11	13	11	y	0.57	20	15	20	15	y	0.0301383151299122	2.82735878585076	up	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13863	chr5	100516211	100517455	-	100516211	100523067	A5SS	ENSMUST00000182569.2	known	0.99	114	1	114	1	n	1.00	146	0	146	0	n	0.99	218	3	218	3	y	1.00	157	0	157	0	n	0.97	99	3	99	3	y	0.98	164	4	164	4	y	0.96	146	6	146	6	y	0.99	140	2	140	2	y	0.0453983125632166	2.82842712474619	up	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13866	chr5	100516211;100521574	100521284;100523067	-	100516211	100523067	cassetteExon	ENSMUST00000182569.2	known	0.99	84.5	1	22;147	1	n	1.00	92.5	0	24;161	0	n	0.98	121.5	3	37;206	3	y	1.00	96.0	0	28;164	0	n	0.96	74.5	3	21;128	3	y	0.97	123.0	4	36;210	4	y	0.94	102.5	6	21;184	6	y	0.98	94.5	2	28;161	2	y	0.0301783957783108	3.06452351073149	up	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13946	chr5	108777909	108786103	+	108777766	108786103	A5SS	ENSMUST00000146207.6	known	0.83	10	2	10	2	y	1.00	5	0	5	0	n	0.73	11	4	11	4	y	0.78	7	2	7	2	n	0.50	3	3	3	3	n	0.64	9	5	9	5	y	0.45	5	6	5	6	y	0.72	13	5	13	5	y	0.0237773485182104	3.0108036740852	up	ENSMUSG00000013495.16	Tmem175	chr5	protein_coding	transmembrane protein 175
known_NIR_13959	chr5	110144499;110151318	110151219;110154810	+	110144499	110154810	cassetteExon	ENSMUST00000112540.8	known	0.69	11.0	5	15;7	5	y	0.62	6.5	4	4;9	4	y	0.52	7.5	7	14;1	7	n	0.57	10.5	8	15;6	8	y	0.54	10.5	9	10;11	9	y	0.49	8.5	9	8;9	9	y	0.40	6.0	9	6;6	9	y	0.37	6.5	11	6;7	11	y	0.0313193694642196	2.80157762864111	up	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
known_NIR_13977	chr5	110526121	110526760	-	110526363	110526760	A3SS	ENSMUST00000196801.5	known	0.60	9	6	9	6	y	0.67	6	3	6	3	n	0.43	9	12	9	12	y	0.65	11	6	11	6	y	0.38	5	8	5	8	y	0.52	17	16	17	16	y	0.40	6	9	6	9	y	0.39	7	11	7	11	y	0.0493931935201872	2.59405960053399	up	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
known_NIR_14248	chr5	125465328	125466974	-	125465328	125466761	A5SS	ENSMUST00000136312.2	known	0.02	5	311	5	311	y	0.03	5	183	5	183	y	0.02	4	251	4	251	y	0.03	9	324	9	324	y	0.02	5	319	5	319	y	0.01	6	431	6	431	y	0.01	5	436	5	436	y	0.01	6	482	6	482	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
known_NIR_14307	chr5	134267746	134269097	-	134267746;134268425	134268351;134269097	ES	ENSMUST00000059042.15	known	0.07	12	160.0	12	151;169	y	0.06	10	158.5	10	144;173	y	0.07	9	113.0	9	97;129	y	0.06	9	141.0	9	136;146	y	0.03	4	145.5	4	132;159	y	0.04	11	246.5	11	213;280	y	0.02	5	202.5	5	186;219	y	0.05	12	221.5	12	219;224	y	0.0122088038324649	4.24264068711928	up	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14308	chr5	134267746	134269097	-	134268425	134269097	3pMXE	ENSMUST00000173888.8	known	0.07	12	169	12	169	y	0.05	10	173	10	173	y	0.07	9	129	9	129	y	0.06	9	146	9	146	y	0.02	4	159	4	159	y	0.04	11	280	11	280	y	0.02	5	219	5	219	y	0.05	12	224	12	224	y	0.0192769674941264	3.3717089216941	up	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14742	chr5	31302096	31302584	-	31302096	31302590	A5SS	ENSMUST00000154241.8	known	0.01	1	95	1	95	n	0.02	2	85	2	85	y	0.03	6	167	6	167	y	0.02	3	128	3	128	y	0.01	1	69	1	69	n	0.01	1	174	1	174	n	0.00	0	131	0	131	n	0.01	1	134	1	134	n	0.0478566196408534	2.61116483933547	up	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14796	chr5	33424381	33432123	-	33424381	33426786	5pMXE	ENSMUST00000201275.4	known	0.09	11	113	11	113	y	0.06	4	66	4	66	y	0.07	10	140	10	140	y	0.08	10	114	10	114	y	0.05	5	91	5	91	y	0.02	3	161	3	161	y	0.05	6	112	6	112	y	0.04	5	117	5	117	y	0.0107898116549913	3.65563077506965	up	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14949	chr5	62761999;62763552	62763418;62769047	-	62761999	62769047	cassetteExon	ENSMUST00000160620.3	known	1.00	6.0	0	6;6	0	n	1.00	8.0	0	11;5	0	n	0.93	14.0	1	15;13	1	n	0.90	17.5	2	19;16	2	y	0.80	16.5	4	24;9	4	y	0.82	9.0	2	10;8	2	y	0.83	10.0	2	19;1	2	n	0.74	17.0	6	21;13	6	y	0.00296392668453527	4.9475334914887	up	ENSMUSG00000037999.14	Arap2	chr5	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
known_NIR_15178	chr6	113247662	113254792	+	113247662	113254751	A3SS	ENSMUST00000113146.9	known	0.08	2	22	2	22	y	0.14	5	32	5	32	y	0.05	2	37	2	37	y	0.07	3	38	3	38	y	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.00	0	43	0	43	n	0.00	0	46	0	46	n	0.0219043195875987	4.38938112570174	up	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15258	chr6	116315451	116369485	+	116315451;116353824	116353654;116369485	ES	ENSMUST00000079012.13	known	0.10	6	57.0	6	51;63	y	0.10	5	43.0	5	32;54	y	0.14	10	61.0	10	64;58	y	0.10	9	85.0	9	72;98	y	0.09	5	48.0	5	43;53	y	0.04	5	128.0	5	105;151	y	0.05	3	57.5	3	46;69	y	0.04	3	80.0	3	64;96	y	0.012860221462122	3.53797136496472	up	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15582	chr6	149044213	149045513	+	149044213	149045532	A3SS	ENSMUST00000126406.8	known	0.01	1	95	1	95	n	0.04	4	89	4	89	y	0.02	6	369	6	369	y	0.03	4	147	4	147	y	0.00	0	82	0	82	n	0.01	2	167	2	167	y	0.00	0	94	0	94	n	0.00	1	210	1	210	n	0.0327788032416222	3.25041803331577	up	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15644	chr6	30126358	30140215	+	30126358	30144580	A3SS	ENSMUST00000115206.8	known	0.40	2	3	2	3	n	0.75	3	1	3	1	n	0.44	4	5	4	5	n	0.60	3	2	3	2	n	0.20	1	4	1	4	n	0.29	5	12	5	12	y	0.31	4	9	4	9	y	0.14	1	6	1	6	n	0.0215263746052088	3.49431123291071	up	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15716	chr6	35229717	35237345	+	35229980	35237345	A5SS	ENSMUST00000136110.2	known	0.68	366	171	366	171	y	0.72	485	188	485	188	y	0.71	473	189	473	189	y	0.69	396	174	396	174	y	0.68	334	155	334	155	y	0.64	618	341	618	341	y	0.67	386	190	386	190	y	0.68	371	171	371	171	y	0.0484096468930958	2.47152457704546	up	ENSMUSG00000073155.13	1810058I24Rik	chr6	protein_coding	RIKEN cDNA 1810058I24 gene
known_NIR_15768	chr6	42334919	42335777	+	42334919	42335103	3pMXE	ENSMUST00000203401.3	known	1.00	2	0	2	0	n	0.50	5	5	5	5	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00598625569770709	7	up	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15776	chr6	47535228	47553497	-	47535228	47553470	A5SS	ENSMUST00000081721.13	known	0.25	1	3	1	3	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.50	2	2	2	2	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.0201502973731398	3.22639714762719	up	ENSMUSG00000029687.17	Ezh2	chr6	protein_coding	enhancer of zeste 2 polycomb repressive complex 2 subunit
known_NIR_15879	chr6	51521732	51538998	+	51521629	51538998	A5SS	ENSMUST00000137212.8	known	0.31	23	52	23	52	y	0.21	14	54	14	54	y	0.26	75	213	75	213	y	0.15	17	93	17	93	y	0.07	4	52	4	52	y	0.10	9	79	9	79	y	0.17	10	48	10	48	y	0.12	8	60	8	60	y	0.0330211254101138	2.9242037791398	up	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15996	chr6	72394996	72395219	+	72394996	72395284	A3SS	ENSMUST00000065906.9	known	0.05	4	83	4	83	y	0.10	5	45	5	45	y	0.07	6	74	6	74	y	0.05	6	113	6	113	y	0.03	2	64	2	64	y	0.02	2	110	2	110	y	0.00	0	66	0	66	n	0.05	4	69	4	69	y	0.036174639797383	2.69920623252731	up	ENSMUSG00000053460.9	Ggcx	chr6	protein_coding	gamma-glutamyl carboxylase
known_NIR_16090	chr6	83953332	83960958	+	83958767	83960958	A5SS&ES	ENSMUST00000113836.6	known	0.23	3	10	3	10	y	0.20	4	16	4	16	y	0.23	6	20	6	20	y	0.32	6	13	6	13	y	0.15	3	17	3	17	y	0.20	7	28	7	28	y	0.15	5	28	5	28	y	0.15	2	11	2	11	y	0.0419127855690306	2.8614628994296	up	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16132	chr6	86371565	86373955	-	86371565	86372896	5pMXE	ENSMUST00000129650.2	known	0.23	27	93	27	93	y	0.25	18	54	18	54	y	0.21	30	115	30	115	y	0.19	40	172	40	172	y	0.16	20	106	20	106	y	0.11	28	216	28	216	y	0.19	24	105	24	105	y	0.18	31	139	31	139	y	0.0376016757339814	2.72915295688405	up	ENSMUSG00000029998.15	Pcyox1	chr6	protein_coding	prenylcysteine oxidase 1
known_NIR_16181	chr6	87902792;87909964	87909841;87910224	+	87902792	87910224	cassetteExon	ENSMUST00000032141.14	known	0.13	2.5	17	2;3	17	y	0.08	3.0	34	1;5	34	n	0.09	5.0	50	2;8	50	y	0.10	3.0	27	1;5	27	n	0.05	1.0	18	0;2	18	n	0.08	3.5	43	3;4	43	y	0.00	0.0	32	0;0	32	n	0.00	0.0	27	0;0	27	n	0.0329919519946801	3	up	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
known_NIR_16245	chr6	98922384	98922495	-	98922387	98922495	A3SS	ENSMUST00000113326.9	known	0.59	13	9	13	9	y	0.44	4	5	4	5	n	0.43	12	16	12	16	y	0.33	9	18	9	18	y	0.26	5	14	5	14	y	0.35	7	13	7	13	y	0.23	3	10	3	10	y	0.25	4	12	4	12	y	0.0383940734988894	2.92514290269111	up	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16268	chr7	100294876;100299239	100299135;100302861	-	100294876	100302861	cassetteExon	ENSMUST00000107046.8	known	0.09	6.0	58	4;8	58	y	0.10	8.5	73	8;9	73	y	0.10	5.5	51	7;4	51	y	0.09	6.0	61	7;5	61	y	0.05	3.5	62	3;4	62	y	0.08	11.5	134	13;10	134	y	0.08	7.0	83	8;6	83	y	0.06	4.5	65	2;7	65	y	0.0281586705241803	3.4219405926104	up	ENSMUSG00000030701.18	Plekhb1	chr7	protein_coding	pleckstrin homology domain containing, family B (evectins) member 1
known_NIR_16503	chr7	119391566	119391654	-	119391571	119391654	A3SS	ENSMUST00000106523.8	known	0.25	3	9	3	9	y	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.0144760422149459	3.54122639211186	up	ENSMUSG00000030929.18	Eri2	chr7	protein_coding	exoribonuclease 2
known_NIR_16554	chr7	126068500;126068742	126068660;126070294	-	126068500	126070294	cassetteExon	ENSMUST00000205440.2	known	0.06	4.0	61	5;3	61	y	0.04	2.5	67	3;2	67	y	0.04	3.0	82	2;4	82	y	0.08	5.5	61	3;8	61	y	0.03	1.5	50	2;1	50	n	0.01	1.5	114	1;2	114	n	0.01	1.0	74	2;0	74	n	0.04	3.0	82	4;2	82	y	0.0389814444523074	2.67223596832737	up	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16603	chr7	126496110	126521982	-	126496110	126496198	5pMXE	ENSMUST00000120007.8	known	0.02	3	126	3	126	y	0.02	2	114	2	114	y	0.02	2	104	2	104	y	0.01	2	133	2	133	y	0.00	0	124	0	124	n	0.01	1	186	1	186	n	0.00	0	145	0	145	n	0.01	3	218	3	218	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16616	chr7	126578168	126578477	+	126578168	126578494	A3SS	ENSMUST00000032920.5	known	0.01	2	143	2	143	y	0.02	3	133	3	133	y	0.01	1	182	1	182	n	0.02	3	135	3	135	y	0.00	0	111	0	111	n	0.00	0	146	0	146	n	0.00	0	150	0	150	n	0.00	0	137	0	137	n	0.013846832988859	5.19615242270663	up	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
known_NIR_16786	chr7	132429611	132438829	-	132433305	132438829	3pMXE	ENSMUST00000152410.8	known	0.22	4	14	4	14	y	0.19	5	22	5	22	y	0.13	3	20	3	20	y	0.21	5	19	5	19	y	0.04	1	23	1	23	n	0.15	6	34	6	34	y	0.06	1	15	1	15	n	0.05	1	19	1	19	n	0.0143101166519079	3.47527477924444	up	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
known_NIR_16813	chr7	136978080;136989430	136989100;137012369	-	136978080	137012369	cassetteExon	ENSMUST00000145881.8	known	0.93	27.0	2	29;25	2	y	1.00	18.5	0	20;17	0	n	1.00	8.5	0	6;11	0	n	0.96	25.0	1	22;28	1	n	0.86	25.0	4	22;28	4	y	0.91	30.0	3	24;36	3	y	0.83	25.0	5	27;23	5	y	0.92	22.0	2	19;25	2	y	0.0155417726661101	3.40132534234922	up	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16917	chr7	140877529	140890675	-	140877529;140881602	140881513;140890675	ES	ENSMUST00000080553.9	known	0.15	5	28.0	5	39;17	y	0.17	8	39.0	8	54;24	y	0.14	4	25.0	4	31;19	y	0.11	4	31.5	4	42;21	y	0.09	3	29.5	3	35;24	y	0.06	3	48.0	3	62;34	y	0.08	3	34.0	3	32;36	y	0.03	1	38.0	1	45;31	n	0.00537068024755561	4.25817748240936	up	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16920	chr7	140881599	140890675	-	140881602	140890675	A3SS	ENSMUST00000080553.9	known	0.19	4	17	4	17	y	0.14	4	24	4	24	y	0.14	3	19	3	19	y	0.12	3	21	3	21	y	0.11	3	24	3	24	y	0.00	0	34	0	34	n	0.10	4	36	4	36	y	0.00	0	31	0	31	n	0.0438589615286164	2.80648599432879	up	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16978	chr7	14161975	14171410	-	14161975	14170312	5pMXE	ENSMUST00000211800.2	known	0.82	36	8	36	8	y	0.79	26	7	26	7	y	1.00	1	0	1	0	n	0.78	68	19	68	19	y	0.54	32	27	32	27	y	0.68	53	25	53	25	y	0.68	46	22	46	22	y	0.77	20	6	20	6	y	0.0426915218600061	2.56815495002312	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_17038	chr7	143365037	143366500	-	143365037;143366344	143366227;143366500	ES	ENSMUST00000033415.15	known	0.29	10	25.0	10	26;24	y	0.35	9	16.5	9	19;14	y	0.28	9	23.5	9	26;21	y	0.23	9	30.5	9	32;29	y	0.23	8	26.5	8	28;25	y	0.08	3	36.5	3	39;34	y	0.07	2	28.0	2	26;30	y	0.15	5	29.0	5	25;33	y	0.0164064059830408	3.4840992190839	up	ENSMUSG00000031090.15	Nadsyn1	chr7	protein_coding	NAD synthetase 1
known_NIR_17067	chr7	16135231	16150698	+	16134966	16150698	A5SS	ENSMUST00000214735.2	known	0.75	3	1	3	1	n	0.64	7	4	7	4	y	0.62	13	8	13	8	y	0.62	5	3	5	3	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.46	6	7	6	7	y	0.42	8	11	8	11	y	0.0315350436676318	3.46230379392067	up	ENSMUSG00000059273.10	Zc3h4	chr7	protein_coding	zinc finger CCCH-type containing 4
known_NIR_17103	chr7	19095241	19102471	+	19095241	19102467	A3SS	ENSMUST00000140836.8	known	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.11	1	8	1	8	n	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.0289257933797008	3.04219616512186	up	ENSMUSG00000040734.15	Ppp1r13l	chr7	protein_coding	protein phosphatase 1, regulatory subunit 13 like
known_NIR_17181	chr7	25320517;25320937	25320849;25321769	+	25320517	25321769	cassetteExon	ENSMUST00000077338.12	known	0.10	9.5	86	15;4	86	y	0.06	5.5	87	7;4	87	y	0.09	4.0	43	3;5	43	y	0.08	9.5	114	14;5	114	y	0.06	5.5	84	8;3	84	y	0.04	5.5	125	7;4	125	y	0.04	5.0	117	8;2	117	y	0.06	8.5	142	15;2	142	y	0.0235448974419351	3.15296312547233	up	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
known_NIR_17445	chr7	3697413	3697597	+	3696888	3697597	A5SS	ENSMUST00000108630.8	known	0.14	5	30	5	30	y	0.06	2	32	2	32	y	0.09	3	29	3	29	y	0.09	4	42	4	42	y	0.05	2	35	2	35	y	0.00	0	51	0	51	n	0.06	3	48	3	48	y	0.00	0	46	0	46	n	0.0263745656849552	2.92856118055186	up	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17476	chr7	42139700	42155034	-	42139700;42150849	42150782;42155034	ES	ENSMUST00000174407.3	known	0.86	6	1.0	6	0;2	n	0.80	2	0.5	2	1;0	n	0.82	7	1.5	7	1;2	n	0.75	6	2.0	6	2;2	y	0.00	0	4.0	0	6;2	n	0.29	3	7.5	3	9;6	y	0.50	2	2.0	2	3;1	n	0.48	7	7.5	7	6;9	y	0.0220008824431732	4.14681334006609	up	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
known_NIR_17507	chr7	44117614	44118231	+	44117614	44118234	A3SS	ENSMUST00000035844.11	known	0.95	63	3	63	3	y	0.93	55	4	55	4	y	0.93	52	4	52	4	y	0.96	51	2	51	2	y	0.90	44	5	44	5	y	0.91	64	6	64	6	y	0.92	60	5	60	5	y	0.89	58	7	58	7	y	0.00945721941260726	3.78968364479934	up	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17630	chr7	44663017	44665504	-	44663017	44663629	5pMXE	ENSMUST00000211735.2	known	0.45	13	16	13	16	y	0.35	7	13	7	13	y	0.50	16	16	16	16	y	0.68	13	6	13	6	y	0.20	3	12	3	12	y	0.31	15	34	15	34	y	0.21	3	11	3	11	y	0.39	11	17	11	17	y	0.0447240574129854	2.63797905541005	up	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17755	chr7	45547090	45556342	+	45547090	45549056	3pMXE	ENSMUST00000210044.2	known	0.17	7	33	7	33	y	0.26	10	29	10	29	y	0.28	18	46	18	46	y	0.18	9	40	9	40	y	0.10	4	35	4	35	y	0.10	5	44	5	44	y	0.12	5	36	5	36	y	0.18	11	49	11	49	y	0.0316712146626165	2.89884717036395	up	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17900	chr7	64050092	64061583	+	64050254	64061583	A5SS	ENSMUST00000037205.11	known	0.16	46	240	46	240	y	0.15	45	260	45	260	y	0.14	11	70	11	70	y	0.14	40	239	40	239	y	0.12	37	268	37	268	y	0.13	51	354	51	354	y	0.11	38	301	38	301	y	0.12	43	329	43	329	y	0.00499569655677369	4.37095677831465	up	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
known_NIR_17939	chr7	67195216	67267741	-	67195216;67209717	67209606;67267741	ES	ENSMUST00000187953.8	known	0.09	4	43.0	4	53;33	y	0.14	6	36.5	6	42;31	y	0.14	8	48.5	8	79;18	y	0.12	7	52.0	7	55;49	y	0.08	2	22.5	2	32;13	y	0.05	3	62.5	3	77;48	y	0.05	2	35.0	2	43;27	y	0.10	4	37.5	4	45;30	y	0.0215575046905479	3.08512327330867	up	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17940	chr7	67195216	67267741	-	67195216;67209812	67209606;67267741	ES	ENSMUST00000053950.10	known	0.10	4	35.5	4	53;18	y	0.17	6	30.0	6	42;18	y	0.13	8	52.5	8	79;26	y	0.16	7	37.5	7	55;20	y	0.08	2	22.5	2	32;13	y	0.06	3	49.5	3	77;22	y	0.06	2	29.0	2	43;15	y	0.13	4	27.5	4	45;10	y	0.0456997100893147	2.51449978392256	up	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17951	chr7	67297593	67301671	+	67297593	67312075	A3SS	ENSMUST00000133710.8	known	-	-	-	-	-	-	0.33	2	4	2	4	n	0.22	2	7	2	7	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.0382883945082479	3.42801821764756	up	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17970	chr7	7243206	7244891	-	7243206	7270218	A5SS	ENSMUST00000209833.2	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.62	5	3	5	3	n	0.78	7	2	7	2	n	0.44	4	5	4	5	n	0.29	4	10	4	10	y	0.30	3	7	3	7	y	0.0350419785402307	2.74835815706303	up	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_18092	chr7	89776252	89776805	-	89776252	89779080	A5SS	ENSMUST00000209164.2	known	0.22	6	21	6	21	y	0.21	7	27	7	27	y	0.25	5	15	5	15	y	0.30	9	21	9	21	y	0.18	4	18	4	18	y	0.11	4	33	4	33	y	0.13	4	27	4	27	y	0.18	4	18	4	18	y	0.0127239566983758	3.52821142536399	up	ENSMUSG00000097162.3	2310010J17Rik	chr7	lncRNA	RIKEN cDNA 2310010J17 gene
known_NIR_18141	chr7	98002337	98008565	-	98002337;98002823	98002684;98008565	ES	ENSMUST00000094161.11	known	0.31	18	41.0	18	54;28	y	0.33	18	36.5	18	46;27	y	0.42	21	29.0	21	40;18	y	0.34	16	31.5	16	41;22	y	0.22	5	17.5	5	24;11	y	0.19	8	33.5	8	50;17	y	0.30	10	23.0	10	27;19	y	0.17	2	9.5	2	10;9	y	0.0138293673549759	3.47439614486152	up	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18142	chr7	98002337	98008565	-	98002823	98008565	3pMXE	ENSMUST00000206770.2	known	0.39	18	28	18	28	y	0.40	18	27	18	27	y	0.54	21	18	21	18	y	0.42	16	22	16	22	y	0.31	5	11	5	11	y	0.32	8	17	8	17	y	0.34	10	19	10	19	y	0.18	2	9	2	9	y	0.0246154664782994	2.98265165132414	up	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18247	chr8	106429028	106429243	+	106429028	106429240	A3SS	ENSMUST00000212634.2	known	0.60	6	4	6	4	y	0.70	7	3	7	3	y	0.67	2	1	2	1	n	0.65	11	6	11	6	y	0.33	3	6	3	6	n	0.42	5	7	5	7	y	0.38	3	5	3	5	n	0.50	3	3	3	3	n	0.00214507515234734	5.94833350444849	up	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18362	chr8	11608566	11611418	+	11607045	11611418	A5SS	ENSMUST00000210670.2	known	0.44	8	10	8	10	y	0.36	12	21	12	21	y	0.48	28	30	28	30	y	0.31	15	33	15	33	y	0.31	9	20	9	20	y	0.32	18	38	18	38	y	0.15	4	22	4	22	y	0.12	4	30	4	30	y	0.0409717714770633	2.65712372228532	up	ENSMUSG00000045969.9	Ing1	chr8	protein_coding	inhibitor of growth family, member 1
known_NIR_18432	chr8	123061998	123062252	+	123061998	123062171	A3SS	ENSMUST00000054052.15	known	0.05	6	114	6	114	y	0.08	7	85	7	85	y	0.06	9	138	9	138	y	0.03	4	123	4	123	y	0.00	0	81	0	81	n	0.03	6	169	6	169	y	0.03	3	110	3	110	y	0.00	0	99	0	99	n	0.026478960584075	2.95419578350399	up	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
known_NIR_18514	chr8	125600218	125600958	+	125600248	125600958	A5SS	ENSMUST00000034466.10	known	0.05	3	55	3	55	y	0.05	2	38	2	38	y	0.11	8	68	8	68	y	0.07	6	82	6	82	y	0.00	0	55	0	55	n	0.04	4	86	4	86	y	0.03	2	65	2	65	y	0.01	1	67	1	67	n	0.0301711092252488	2.97044262893002	up	ENSMUSG00000031985.10	Gnpat	chr8	protein_coding	glyceronephosphate O-acyltransferase
known_NIR_18564	chr8	13103469	13105293	+	13103473	13105293	A5SS	ENSMUST00000063820.12	known	0.03	51	1725	51	1725	y	0.03	54	2052	54	2052	y	0.04	47	1293	47	1293	y	0.04	70	1779	70	1779	y	0.02	42	1706	42	1706	y	0.03	82	2354	82	2354	y	0.02	48	1994	48	1994	y	0.03	66	2249	66	2249	y	0.0498252627805767	2.44948974278318	up	ENSMUSG00000031444.17	F10	chr8	protein_coding	coagulation factor X
known_NIR_18694	chr8	3565556	3566681	+	3566568	3566681	A5SS&ES	ENSMUST00000207146.2	known	0.33	4	8	4	8	y	0.50	4	4	4	4	n	0.52	13	12	13	12	y	0.48	13	14	13	14	y	0.36	4	7	4	7	y	0.24	4	13	4	13	y	0.12	1	7	1	7	n	0.23	7	23	7	23	y	0.0155299077547108	3.36312554585697	up	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18733	chr8	41537877	41586698	-	41537877	41586518	A5SS	ENSMUST00000059115.13	known	0.05	3	63	3	63	y	0.03	1	39	1	39	n	0.04	3	75	3	75	y	0.04	4	102	4	102	y	0.00	0	70	0	70	n	0.02	2	92	2	92	y	0.00	0	55	0	55	n	0.03	3	99	3	99	y	0.0261377052147607	3.22047024073016	up	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18899	chr8	70763141	70765356	+	70763141;70764346	70764278;70765356	ES	ENSMUST00000066469.14	known	0.01	3	505.0	3	500;510	y	0.02	9	590.5	9	579;602	y	0.02	19	843.5	19	819;868	y	0.02	7	451.5	7	454;449	y	0.00	2	416.0	2	413;419	y	0.00	3	643.5	3	621;666	y	0.01	4	636.0	4	636;636	y	0.01	3	534.0	3	529;539	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000055681.15	Cope	chr8	protein_coding	coatomer protein complex, subunit epsilon
known_NIR_18908	chr8	70962284	70962768	-	70962281	70962768	A3SS	ENSMUST00000140679.8	known	0.88	185	26	185	26	y	0.88	235	33	235	33	y	0.86	280	47	280	47	y	0.85	197	36	197	36	y	0.82	167	36	167	36	y	0.79	267	72	267	72	y	0.81	242	56	242	56	y	0.83	243	50	243	50	y	0.00301617956050545	4.83935479570466	up	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18938	chr8	71054966	71055085	-	71054966	71055051	A5SS	ENSMUST00000049908.11	known	0.15	2	11	2	11	y	0.08	2	23	2	23	y	0.05	1	18	1	18	n	0.12	2	15	2	15	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.00	0	16	0	16	n	0.0362861852900513	2.69170633964181	up	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18957	chr8	71242729;71249446	71249357;71252102	-	71242729	71252102	cassetteExon	ENSMUST00000212757.2	known	1.00	9.5	0	15;4	0	n	1.00	5.5	0	8;3	0	n	0.83	10.0	2	20;0	2	n	0.85	11.0	2	17;5	2	y	0.67	4.0	2	6;2	2	y	0.68	10.5	5	12;9	5	y	0.80	8.0	2	8;8	2	y	0.60	6.0	4	9;3	4	y	0.00988411164804211	3.73597430858767	up	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_19226	chr8	96575396	96580114	-	96575396;96579535	96579430;96580114	ES	ENSMUST00000212270.2	known	0.25	4	12.0	4	18;6	y	0.15	2	11.5	2	17;6	y	0.17	4	20.0	4	24;16	y	0.17	3	14.5	3	21;8	y	0.11	1	8.0	1	10;6	n	0.11	2	15.5	2	19;12	y	0.06	1	17.0	1	23;11	n	0.15	3	17.5	3	24;11	y	0.0373388106398943	2.68804090552477	up	ENSMUSG00000036534.7	Slc38a7	chr8	protein_coding	solute carrier family 38, member 7
known_NIR_19682	chr9	121681675;121685938	121685504;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.02	7.0	402	6;8	402	y	0.01	3.0	281	4;2	281	y	0.02	8.0	391	6;10	391	y	0.01	5.5	381	4;7	381	y	0.00	1.5	332	3;0	332	n	0.01	4.5	460	6;3	460	y	0.01	3.0	407	2;4	407	y	0.00	1.5	374	2;1	374	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19705	chr9	122180904	122194201	+	122180904	122204971	A3SS	ENSMUST00000111497.5	known	0.97	37	1	37	1	n	1.00	22	0	22	0	n	1.00	56	0	56	0	n	1.00	28	0	28	0	n	0.94	33	2	33	2	y	0.96	45	2	45	2	y	0.98	47	1	47	1	n	0.93	42	3	42	3	y	0.0285731188701243	2.98834947055051	up	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
known_NIR_19771	chr9	15416937	15436924	+	15404925	15436924	A5SS	ENSMUST00000215907.2	known	0.05	1	21	1	21	n	0.03	1	39	1	39	n	0.09	4	42	4	42	y	0.06	2	30	2	30	y	0.00	0	16	0	16	n	0.03	1	34	1	34	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.0191671500284161	3.42997170285018	up	ENSMUSG00000058173.13	Smco4	chr9	protein_coding	single-pass membrane protein with coiled-coil domains 4
known_NIR_19853	chr9	21839038	21840389	+	21839024	21840389	A5SS	ENSMUST00000006403.7	known	0.31	5	11	5	11	y	0.25	4	12	4	12	y	0.11	2	17	2	17	y	0.25	6	18	6	18	y	0.00	0	20	0	20	n	0.20	7	28	7	28	y	0.04	1	22	1	22	n	0.00	0	21	0	21	n	0.0377076645911923	2.66581270479552	up	ENSMUSG00000006241.17	Ccdc159	chr9	protein_coding	coiled-coil domain containing 159
known_NIR_19944	chr9	38629683	38633669	+	38630629	38633669	5pMXE	ENSMUST00000129598.2	known	0.14	3	18	3	18	y	0.37	11	19	11	19	y	0.32	10	21	10	21	y	0.29	9	22	9	22	y	0.17	4	20	4	20	y	0.07	3	37	3	37	y	0.12	2	15	2	15	y	0.13	6	41	6	41	y	0.0423793283354036	2.93845499650709	up	ENSMUSG00000023186.15	Vwa5a	chr9	protein_coding	von Willebrand factor A domain containing 5A
known_NIR_20017	chr9	44954092	44954998	+	44951880	44954998	A5SS	ENSMUST00000217097.2	known	0.90	65	7	65	7	y	0.94	58	4	58	4	y	0.90	53	6	53	6	y	0.95	139	8	139	8	y	0.90	46	5	46	5	y	0.82	91	20	91	20	y	0.85	64	11	64	11	y	0.82	56	12	56	12	y	0.0202996264079046	3.26035600200999	up	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
known_NIR_20060	chr9	46146024	46146617	-	46146024	46146820	A5SS	ENSMUST00000118649.8	known	0.10	2	19	2	19	y	0.14	3	18	3	18	y	0.14	5	31	5	31	y	0.06	2	29	2	29	y	0.03	1	32	1	32	n	0.03	1	39	1	39	n	0.04	1	27	1	27	n	0.02	1	46	1	46	n	0.0224033809194225	4.08603134764199	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20170	chr9	57063295	57063456	-	57063266	57063456	A3SS	ENSMUST00000214072.2	known	0.07	11	138	11	138	y	0.05	7	143	7	143	y	0.07	9	114	9	114	y	0.04	6	162	6	162	y	0.05	6	119	6	119	y	0.03	5	178	5	178	y	0.02	4	168	4	168	y	0.02	3	131	3	131	y	0.0372550314113828	2.66789187539966	up	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20184	chr9	57353456	57358639	-	57353456	57354360	5pMXE	ENSMUST00000215208.2	known	0.06	2	33	2	33	y	0.04	1	25	1	25	n	0.09	3	30	3	30	y	0.03	1	36	1	36	n	0.00	0	36	0	36	n	0.03	1	36	1	36	n	0.00	0	28	0	28	n	0.00	0	29	0	29	n	0.02804048035161	3.12358075880179	up	ENSMUSG00000040722.8	Scamp5	chr9	protein_coding	secretory carrier membrane protein 5
known_NIR_20185	chr9	57353456	57358639	-	57353456;57354516	57354360;57358639	ES	ENSMUST00000046587.8	known	0.07	2	25.0	2	33;17	y	0.04	1	22.0	1	25;19	n	0.08	3	35.0	3	30;40	y	0.03	1	31.0	1	36;26	n	0.00	0	26.5	0	36;17	n	0.03	1	28.0	1	36;20	n	0.00	0	21.0	0	28;14	n	0.00	0	27.5	0	29;26	n	0.0194036861741528	3.37638860322683	up	ENSMUSG00000040722.8	Scamp5	chr9	protein_coding	secretory carrier membrane protein 5
known_NIR_20224	chr9	58838398	58863242	-	58838458	58863242	A3SS	ENSMUST00000068664.7	known	0.43	3	4	3	4	n	0.50	2	2	2	2	n	0.61	11	7	11	7	y	0.43	6	8	6	8	y	0.00	0	6	0	6	n	0.39	7	11	7	11	y	0.33	3	6	3	6	n	0.17	3	15	3	15	y	0.0456796504166272	2.77562517503451	up	ENSMUSG00000032340.9	Neo1	chr9	protein_coding	neogenin
known_NIR_20234	chr9	59548379	59556113	+	59548379;59549093	59549024;59556113	ES	ENSMUST00000026267.16	known	1.00	18	0.0	18	0;0	n	0.76	13	4.0	13	2;6	y	0.88	11	1.5	11	2;1	n	0.97	15	0.5	15	1;0	n	0.71	10	4.0	10	5;3	y	0.85	22	4.0	22	5;3	y	0.71	12	5.0	12	2;8	y	0.67	8	4.0	8	2;6	y	0.0496901235478509	2.50682688963485	up	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20310	chr9	66943410	66955406	-	66943410	66950860	5pMXE	ENSMUST00000113696.8	known	0.01	1	87	1	87	n	0.02	1	60	1	60	n	0.01	2	211	2	211	y	0.01	1	83	1	83	n	0.00	0	66	0	66	n	0.00	0	84	0	84	n	0.00	0	64	0	64	n	0.00	0	59	0	59	n	0.0153924380733023	5	up	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20317	chr9	69910949	69914346	+	69910949	69911588	3pMXE	ENSMUST00000137472.2	known	0.86	132	22	132	22	y	0.87	111	17	111	17	y	0.84	197	38	197	38	y	0.87	136	21	136	21	y	0.83	86	18	86	18	y	0.76	125	39	125	39	y	0.79	83	22	83	22	y	0.80	139	35	139	35	y	0.0130647894321228	4.04411160944866	up	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20331	chr9	69924205	69929719	+	69924205;69926797	69926671;69929719	ES	ENSMUST00000118198.8	known	0.02	7	298.0	7	220;376	y	0.01	3	396.0	3	257;535	y	0.02	13	830.5	13	673;988	y	0.01	4	320.0	4	240;400	y	0.00	0	239.0	0	180;298	n	0.00	1	326.5	1	245;408	n	0.01	3	286.0	3	197;375	y	0.01	3	332.5	3	225;440	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20432	chr9	83830968	83834577	+	83807412	83834577	A5SS	ENSMUST00000190637.7	known	0.37	50	86	50	86	y	0.40	44	67	44	67	y	0.32	57	122	57	122	y	0.31	52	116	52	116	y	0.26	40	115	40	115	y	0.22	50	182	50	182	y	0.25	40	117	40	117	y	0.21	45	173	45	173	y	0.00603788173996095	4.72780209780997	up	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
known_NIR_20499	chr9	95921897	95927539	+	95921909	95927539	A5SS	ENSMUST00000034981.14	known	0.60	3	2	3	2	n	0.78	7	2	7	2	n	0.88	15	2	15	2	y	0.80	4	1	4	1	n	0.50	2	2	2	2	n	0.58	7	5	7	5	y	0.57	4	3	4	3	n	0.50	6	6	6	6	y	0.0245664692656509	3.61312199513944	up	ENSMUSG00000032410.14	Xrn1	chr9	protein_coding	5'-3' exoribonuclease 1
known_NIR_20559	chrX	10583943	10584226	+	10583943	10584223	A3SS	ENSMUST00000115524.8	known	0.81	92	21	92	21	y	0.87	39	6	39	6	y	0.84	27	5	27	5	y	0.79	113	30	113	30	y	0.73	86	32	86	32	y	0.72	130	50	130	50	y	0.73	122	44	122	44	y	0.78	133	38	133	38	y	0.00847785041013933	3.95452878006223	up	ENSMUSG00000008035.13	Mid1ip1	chrX	protein_coding	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
known_NIR_20593	chrX	13415600	13418612	-	13415600;13417221	13417186;13418612	ES	ENSMUST00000115438.10	known	0.61	7	4.5	7	9;0	n	0.67	3	1.5	3	2;1	n	0.89	17	2.0	17	4;0	n	0.75	12	4.0	12	7;1	n	0.53	5	4.5	5	9;0	n	0.50	8	8.0	8	13;3	y	0.56	7	5.5	7	8;3	y	0.50	6	6.0	6	9;3	y	0.0380751726559923	3.3342566409976	up	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20599	chrX	134643727;134644271	134644191;134645248	+	134643727	134645248	cassetteExon	ENSMUST00000113144.8	known	0.67	4.0	2	2;6	2	y	0.60	1.5	1	1;2	1	n	0.50	2.0	2	0;4	2	n	1.00	1.5	0	1;2	0	n	0.25	1.0	3	0;2	3	n	0.14	0.5	3	0;1	3	n	0.33	2.0	4	4;0	4	n	0.29	2.0	5	4;0	5	n	0.0205653355660595	3.80161216517839	up	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20601	chrX	134643727;134644363	134644191;134645248	+	134643727	134645248	cassetteExon	ENSMUST00000113144.8	known	0.67	4.0	2	2;6	2	y	0.75	3.0	1	1;5	1	n	0.81	8.5	2	0;17	2	n	1.00	4.0	0	1;7	0	n	0.45	2.5	3	0;5	3	n	0.54	3.5	3	0;7	3	n	0.64	7.0	4	4;10	4	y	0.69	11.0	5	4;18	5	y	0.0446318339130717	2.57765201629121	up	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20619	chrX	137984467	137985937	-	137984647	137985937	A3SS&ES	ENSMUST00000060824.4	known	1.00	9	0	9	0	n	0.81	29	7	29	7	y	0.73	90	34	90	34	y	0.92	11	1	11	1	n	0.60	6	4	6	4	y	0.67	24	12	24	12	y	0.76	13	4	13	4	y	0.68	15	7	15	7	y	0.0429329470127873	2.76016487877329	up	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
known_NIR_20744	chrX	23127812;23160519	23160454;23181369	-	23127812	23181369	cassetteExon	ENSMUST00000115313.8	known	1.00	0.5	0	0;1	0	n	1.00	0.5	0	0;1	0	n	0.33	1.0	2	1;1	2	n	1.00	1.5	0	1;2	0	n	0.00	0.0	3	0;0	3	n	0.50	1.0	1	1;1	1	n	0.33	2.5	5	2;3	5	y	0.33	1.0	2	0;2	2	n	0.0401863830693765	2.74683544303797	up	ENSMUSG00000036782.14	Klhl13	chrX	protein_coding	kelch-like 13
known_NIR_20767	chrX	41156933	41157234	+	41155679	41157234	A5SS	ENSMUST00000141316.8	known	0.23	5	17	5	17	y	0.12	1	7	1	7	n	0.27	7	19	7	19	y	0.24	5	16	5	16	y	0.11	2	17	2	17	y	0.13	4	26	4	26	y	0.07	1	13	1	13	n	0.14	2	12	2	12	y	0.0439981432534652	2.82702601150583	up	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20810	chrX	49659168	49662101	-	49659168;49662018	49661892;49662101	ES	ENSMUST00000204974.3	known	0.42	7	9.5	7	16;3	y	0.48	10	11.0	10	14;8	y	0.44	13	16.5	13	31;2	y	0.36	10	17.5	10	31;4	y	0.19	3	13.0	3	24;2	y	0.36	9	16.0	9	29;3	y	0.16	3	16.0	3	26;6	y	0.33	10	20.0	10	35;5	y	0.0367147881566282	2.95951231400196	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20854	chrX	72825709	72826281	-	72825709	72825904	5pMXE	ENSMUST00000145341.2	known	0.34	37	72	37	72	y	0.29	29	71	29	71	y	0.26	30	86	30	86	y	0.30	49	112	49	112	y	0.26	32	93	32	93	y	0.20	43	175	43	175	y	0.15	22	123	22	123	y	0.18	34	154	34	154	y	0.0150195337430238	3.50823207722812	up	ENSMUSG00000002010.18	Idh3g	chrX	protein_coding	isocitrate dehydrogenase 3 (NAD+), gamma
known_NIR_20855	chrX	72825709	72826281	-	72825709;72825915	72825904;72826281	ES	ENSMUST00000052761.9	known	0.32	37	77.0	37	72;82	y	0.28	29	74.5	29	71;78	y	0.25	30	89.5	30	86;93	y	0.31	49	108.5	49	112;105	y	0.26	32	90.5	32	93;88	y	0.20	43	168.5	43	175;162	y	0.15	22	120.5	22	123;118	y	0.18	34	158.5	34	154;163	y	0.0199454512309312	3.29187053352629	up	ENSMUSG00000002010.18	Idh3g	chrX	protein_coding	isocitrate dehydrogenase 3 (NAD+), gamma
known_NIR_20909	chrX	73332119	73332711	+	73332625	73332711	A5SS	ENSMUST00000156212.8	known	0.91	42	4	42	4	y	0.86	32	5	32	5	y	0.88	15	2	15	2	y	0.83	38	8	38	8	y	0.72	38	15	38	15	y	0.73	37	14	37	14	y	0.74	50	18	50	18	y	0.71	46	19	46	19	y	0.0014994383060681	8.04315284526582	up	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
novel_NIR_73	chr1	130566970	130568066	-	130566970	130570710	A5SS	ENSMUST00000171642.8	novel	0.14	14	85	14	85	n	0.17	16	80	16	80	y	0.16	43	230	43	230	y	0.10	10	87	10	87	n	0.09	6	62	6	62	n	0.07	7	99	7	99	n	0.03	2	64	2	64	n	0.12	10	73	10	73	n	0.0387654536194261	2.66287609379578	up	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
novel_NIR_180	chr1	133565194	133566271	-	133565197	133566271	A3SS	ENSMUST00000191896.6	novel	0.16	18	92	18	92	y	0.12	10	73	10	73	n	0.13	18	120	18	120	n	0.14	15	89	15	89	n	0.10	11	96	11	96	n	0.10	14	120	14	120	n	0.09	8	82	8	82	n	0.07	9	113	9	113	n	0.00560097584880052	4.28438235961613	up	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_239	chr1	13739339	13742350	+	13739091	13742350	A5SS	ENSMUST00000088542.4	novel	0.29	8	20	8	20	y	0.26	6	17	6	17	y	0.14	4	25	4	25	n	0.18	6	27	6	27	y	0.04	1	27	1	27	n	0.14	7	43	7	43	n	0.10	3	26	3	26	n	0.04	2	47	2	47	n	0.0207039262139655	3.23529411764706	up	ENSMUSG00000067813.4	Xkr9	chr1	protein_coding	X-linked Kx blood group related 9
novel_NIR_386	chr1	157354025	157356734	+	157352423	157356734	A5SS	ENSMUST00000086130.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0222864813497627	4.09472489562443	up	ENSMUSG00000026589.15	Sec16b	chr1	protein_coding	SEC16 homolog B (S. cerevisiae)
novel_NIR_415	chr1	160864894	160865075	+	160864422	160865075	A5SS	ENSMUST00000159119.8	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.0394590987516206	4.88392882177825	up	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
novel_NIR_668	chr1	184554747	184554932	-	184554747	184559305	A5SS	ENSMUST00000162261.8	novel	0.57	12	9	12	9	y	0.65	20	11	20	11	y	1.00	15	0	15	0	y	0.42	11	15	11	15	y	0.14	2	12	2	12	n	0.17	5	25	5	25	y	0.33	6	12	6	12	y	0.35	11	20	11	20	y	0.0358539489758883	3.07263812945128	up	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_669	chr1	184554747	184554932	-	184554747	184559385	A5SS	ENSMUST00000162866.7	novel	0.63	12	7	12	7	y	0.69	20	9	20	9	y	0.68	15	7	15	7	y	0.69	11	5	11	5	y	0.17	2	10	2	10	y	0.26	5	14	5	14	y	0.43	6	8	6	8	y	0.46	11	13	11	13	y	0.0137960628180831	4.84873484994735	up	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_795	chr1	37065726	37074718	+	37065726	37074789	A3SS	ENSMUST00000117172.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00530890186149396	5.84534241979608	up	ENSMUSG00000050122.20	Vwa3b	chr1	protein_coding	von Willebrand factor A domain containing 3B
novel_NIR_939	chr1	58752818	58753276	+	58752818	58756419	A3SS	ENSMUST00000097723.3	novel	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.71	10	4	10	4	y	0.80	4	1	4	1	y	0.64	7	4	7	4	y	0.30	3	7	3	7	y	0.38	3	5	3	5	y	0.33	2	4	2	4	y	0.0200386326655171	3.88175944735273	up	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_1121	chr1	75412655	75412798	+	75412655	75412790	A3SS	ENSMUST00000113584.8	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.0377495513506237	5	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1331	chr1	92845848	92846565	+	92845848	92846660	A3SS	ENSMUST00000178816.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.00159282664510887	11.0375278706045	up	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1393	chr1	97644365	97645167	-	97644329	97645167	A3SS	ENSMUST00000112845.8	novel	0.05	2	35	2	35	n	0.06	1	15	1	15	n	0.02	1	47	1	47	n	0.04	1	27	1	27	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.0493357117702655	2.47152457704546	up	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1547	chr10	127836540	127843314	-	127836545	127843314	A3SS	ENSMUST00000219447.2	novel	1.00	5	0	5	0	y	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	0.80	8	2	8	2	y	0.76	13	4	13	4	y	0.50	8	8	8	8	y	0.80	28	7	28	7	y	0.0290830177479892	3.94277244403662	up	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1548	chr10	127836545	127843298	-	127836545	127843314	A5SS	ENSMUST00000219447.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.42	5	7	5	7	y	0.00349140603939534	8.43945726351779	up	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1993	chr10	78187545	78187835	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00598625569770709	7	up	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1995	chr10	78187545	78187867	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	0.83	5	1	5	1	y	0.94	16	1	16	1	y	0.83	5	1	5	1	y	0.88	7	1	7	1	y	0.0156216513909146	4.97309836189404	up	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_2037	chr10	79989967	79990168	+	79989967	79990165	A3SS	ENSMUST00000099492.10	novel	0.46	24	28	24	28	y	0.38	30	50	30	50	y	0.31	30	66	30	66	y	0.38	25	41	25	41	y	0.26	22	62	22	62	y	0.32	29	62	29	62	y	0.33	19	39	19	39	y	0.23	17	57	17	57	y	0.0484743006049454	2.50529013878728	up	ENSMUSG00000035621.14	Midn	chr10	protein_coding	midnolin
novel_NIR_2097	chr10	80702494	80703237	+	80702494	80703234	A3SS	ENSMUST00000035597.10	novel	0.33	4	8	4	8	y	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.0490069119957367	2.90785781829068	up	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
novel_NIR_2577	chr11	115167008	115168091	-	115167008	115167635	5pMXE	ENSMUST00000021078.3	novel	0.54	19	16	19	16	y	0.53	24	21	24	21	y	0.58	18	13	18	13	y	0.28	10	26	10	26	y	0.32	13	28	13	28	y	0.24	13	41	13	41	y	0.15	8	44	8	44	y	0.33	17	35	17	35	y	0.0393250456461384	2.77628388127473	up	ENSMUSG00000018861.9	Fdxr	chr11	protein_coding	ferredoxin reductase
novel_NIR_2605	chr11	115513674	115514698	-	115514418	115514698	A3SS&ES	ENSMUST00000144083.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0377495513506237	5	up	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2824	chr11	16833613	16839913	+	16833613	16834254	3pMXE	ENSMUST00000125984.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.0262641307324393	6.04825556246074	up	ENSMUSG00000020122.17	Egfr	chr11	protein_coding	epidermal growth factor receptor
novel_NIR_2866	chr11	23445064	23446787	-	23445064	23446766	A5SS	ENSMUST00000147157.8	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.0255536112946458	6.13513513513513	up	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
novel_NIR_3212	chr11	59344471	59344635	+	59344471	59344654	A3SS	ENSMUST00000045279.13	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.0221457884124725	4.37141326972466	up	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
novel_NIR_3415	chr11	70126290	70126823	-	70126294	70126823	A3SS	ENSMUST00000108575.9	novel	0.38	3	5	3	5	y	0.21	3	11	3	11	y	0.43	10	13	10	13	y	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.0373027088252733	2.83363920624348	up	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
novel_NIR_3829	chr11	98136495	98154296	+	98136495	98140536	3pMXE	ENSMUST00000107539.8	novel	0.43	3	4	3	4	y	0.33	2	4	2	4	y	0.38	5	8	5	8	y	0.50	5	5	5	5	y	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.11	1	8	1	8	n	0.0105674555650311	3.73582138242076	up	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3830	chr11	98136495	98154296	+	98136495;98140926	98140536;98154296	ES	ENSMUST00000147441.8	novel	0.32	3	6.5	3	4;9	y	0.29	2	5.0	2	4;6	y	0.36	5	9.0	5	8;10	y	0.37	5	8.5	5	5;12	y	0.22	1	3.5	1	3;4	n	0.07	1	13.0	1	7;19	n	0.25	2	6.0	2	5;7	y	0.12	1	7.0	1	8;6	n	0.0199162275020614	3.69507013561131	up	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3844	chr11	98932954	98939052	+	98935738	98939052	5pMXE	ENSMUST00000123946.2	novel	0.64	9	5	9	5	y	0.86	6	1	6	1	y	0.64	9	5	9	5	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.60	6	4	6	4	y	0.38	5	8	5	8	y	0.00	0	6	0	6	n	0.0268654477664863	3.12551503293546	up	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3845	chr11	98932954	98939052	+	98938229	98939052	5pMXE	ENSMUST00000140772.2	novel	0.69	9	4	9	4	y	0.75	6	2	6	2	y	0.39	9	14	9	14	y	0.44	4	5	4	5	y	0.00	0	8	0	8	n	0.30	6	14	6	14	y	0.29	5	12	5	12	y	0.00	0	4	0	4	n	0.0145560624252012	3.39966756576868	up	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3943	chr12	103824315	103829450	-	103824315	103825260	A5SS&ES	ENSMUST00000124717.2	novel	0.32	22	46	22	46	y	0.35	20	37	20	37	y	0.22	15	53	15	53	y	0.28	23	58	23	58	y	0.21	13	48	13	48	y	0.13	11	75	11	75	n	0.21	12	45	12	45	y	0.19	24	100	24	100	y	0.0230709514170644	3.17287734323417	up	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3971	chr12	103954745	103956148	-	103954748	103956148	A3SS	ENSMUST00000176246.3	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.18	2	9	2	9	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.0448353843926757	3.32652001571534	up	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_4063	chr12	110760807	110769839	+	110760807;110763441	110763377;110769839	ES	ENSMUST00000194118.2	novel	0.69	9	4.0	9	3;5	y	0.52	6	5.5	6	2;9	y	0.74	7	2.5	7	2;3	y	0.38	3	5.0	3	5;5	y	0.50	6	6.0	6	5;7	y	0.00	0	5.0	0	5;5	n	0.30	3	7.0	3	6;8	y	0.12	1	7.0	1	5;9	n	0.0446501750472857	2.57960400065175	up	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
novel_NIR_4367	chr12	52551170	52562862	+	52551170	52589275	A3SS	ENSMUST00000217820.2	novel	1.00	4	0	4	0	y	0.83	5	1	5	1	y	0.88	23	3	23	3	y	1.00	16	0	16	0	y	0.43	3	4	3	4	y	0.67	10	5	10	5	y	0.70	7	3	7	3	y	0.68	15	7	15	7	y	0.00925745705729318	4.00119029908898	up	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4371	chr12	52566750	52589275	+	52551170	52589275	A5SS	ENSMUST00000217820.2	novel	1.00	7	0	7	0	y	0.88	7	1	7	1	y	0.84	16	3	16	3	y	1.00	10	0	10	0	y	0.00	0	4	0	4	n	0.64	9	5	9	5	y	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.0271469121592171	3.7495141898779	up	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4374	chr12	54697456	54703119	-	54697456	54703150	A5SS	ENSMUST00000218147.2	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.0474206555843196	2.82842712474619	up	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
novel_NIR_5376	chr13	74788056;74789701	74789660;74794290	+	74788056	74794290	cassetteExon	ENSMUST00000221526.2	novel	1.00	1.0	0	0;2	0	n	1.00	0.5	0	0;1	0	n	1.00	1.5	0	0;3	0	n	0.71	5.0	2	2;8	2	y	0.20	0.5	2	0;1	2	n	0.54	3.5	3	1;6	3	n	0.08	0.5	6	0;1	6	n	0.56	2.5	2	1;4	2	n	0.00943248897279008	4.13117969941959	up	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5378	chr13	74789701	74794290	+	74788056	74794290	A5SS	ENSMUST00000221526.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.80	8	2	8	2	n	0.33	1	2	1	2	n	0.67	6	3	6	3	n	0.14	1	6	1	6	n	0.67	4	2	4	2	n	0.0256165499111419	3.53799909163881	up	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5592	chr14	20738681	20752980	-	20738681;20738907	20738833;20752980	ES	ENSMUST00000180987.2	novel	0.33	1	2.0	1	2;2	n	0.57	2	1.5	2	2;1	y	0.50	1	1.0	1	2;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	1;3	n	-	-	-	-	-	-	0.022531298757377	6.54892377614983	up	ENSMUSG00000097577.3	6230400D17Rik	chr14	lncRNA	RIKEN cDNA 6230400D17 gene
novel_NIR_6027	chr14	55875650	55877842	-	55875962	55877842	3pMXE	ENSMUST00000130167.8	novel	0.83	5	1	5	1	y	0.77	10	3	10	3	y	0.83	15	3	15	3	y	1.00	2	0	2	0	y	0.73	8	3	8	3	y	0.75	6	2	6	2	y	0.64	7	4	7	4	y	0.50	1	1	1	1	n	0.0370839459664222	2.68266832157521	up	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6275	chr14	70556389;70585971	70585772;70588729	-	70556389	70588729	cassetteExon	ENSMUST00000146453.2	novel	0.16	4.0	21	5;3	21	y	0.19	2.5	11	2;3	11	y	0.09	11.5	110	13;10	110	n	0.15	6.5	37	3;10	37	y	0.03	0.5	17	0;1	17	n	0.09	3.0	31	6;0	31	n	0.00	0.0	15	0;0	15	n	0.07	3.0	37	3;3	37	n	0.0138617849034129	3.43840953036752	up	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6366	chr14	87694554	87696197	+	87694554	87696193	A3SS	ENSMUST00000169504.8	novel	0.17	2	10	2	10	y	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.06	1	17	1	17	n	0.00205846742614128	5.17826544218146	up	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
novel_NIR_6744	chr15	66502919	66504555	+	66502894	66504555	A5SS	ENSMUST00000229033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00816340186582448	11	up	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
novel_NIR_6782	chr15	74828562	74829629	+	74829312	74829629	A5SS&ES	ENSMUST00000191145.7	novel	0.50	4	4	4	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.0377495513506237	5	up	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6798	chr15	75773104	75782071	-	75773104	75781309	5pMXE	ENSMUST00000144614.8	novel	0.30	3	7	3	7	y	0.60	6	4	6	4	y	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.0465500844204285	3.27645142268898	up	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_7430	chr16	21620106	21627428	+	21625869	21627428	A5SS&ES	ENSMUST00000211443.2	novel	0.56	5	4	5	4	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.33	4	8	4	8	y	0.0100976711607616	3.92003492996214	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7483	chr16	23012317	23037513	+	23012317	23022241	3pMXE	ENSMUST00000232204.2	novel	0.17	5	24	5	24	y	0.21	7	26	7	26	y	0.33	1	2	1	2	n	0.17	5	25	5	25	y	0.14	1	6	1	6	n	0.10	4	37	4	37	n	0.03	1	28	1	28	n	0.00	0	29	0	29	n	0.0225293154798516	3.07704296106244	up	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7631	chr16	36711854	36713696	+	36711854	36715193	A3SS	ENSMUST00000114812.9	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.36	4	7	4	7	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.0286034072051464	4.1339917320248	up	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_8520	chr17	34249708	34249959	-	34249708	34250522	A5SS	ENSMUST00000173810.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	5	up	ENSMUSG00000024327.17	Slc39a7	chr17	protein_coding	solute carrier family 39 (zinc transporter), member 7
novel_NIR_8751	chr17	51146768	51159561	-	51120869	51159561	A3SS	ENSMUST00000024717.10	novel	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.12	2	14	2	14	n	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.0145187405855149	5.10753918455249	up	ENSMUSG00000023923.11	Tbc1d5	chr17	protein_coding	TBC1 domain family, member 5
novel_NIR_8965	chr17	84442012	84442265	-	84442108	84442265	A3SS	ENSMUST00000234741.2	novel	0.78	14	4	14	4	y	0.80	20	5	20	5	y	1.00	4	0	4	0	y	0.88	15	2	15	2	y	0.71	12	5	12	5	y	0.66	27	14	27	14	y	0.72	21	8	21	8	y	0.65	17	9	17	9	y	0.0303450326722023	3.40168025708304	up	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_9142	chr18	24604141	24608582	+	24604037	24608582	A5SS	ENSMUST00000234303.2	novel	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.60	6	4	6	4	y	0.79	11	3	11	3	y	0.0149043765195194	5.05906077656312	up	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9813	chr19	37152385	37184941	-	37152385	37184632	5pMXE	ENSMUST00000126188.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00268544264625521	9.23579631883463	up	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_10004	chr19	45411679	45459454	+	45411679;45445049	45444972;45459454	ES	ENSMUST00000065601.13	novel	0.18	3	14.0	3	14;14	y	0.45	5	6.0	5	4;8	y	0.32	4	8.5	4	6;11	y	0.19	4	17.0	4	13;21	y	0.00	0	9.5	0	4;15	n	0.00	0	22.5	0	19;26	n	0.09	1	10.5	1	11;10	n	0.18	4	18.5	4	14;23	y	0.0344415646457848	2.8321088772035	up	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10005	chr19	45411679	45459454	+	45445049	45459454	A5SS&ES	ENSMUST00000111936.4	novel	0.18	3	14	3	14	y	0.38	5	8	5	8	y	0.27	4	11	4	11	y	0.16	4	21	4	21	y	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.09	1	10	1	10	n	0.15	4	23	4	23	y	0.0263307484424797	3.01288250692554	up	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10113	chr19	55303204	55303932	-	55303204	55304112	A5SS	ENSMUST00000226103.2	novel	0.78	7	2	7	2	y	0.38	5	8	5	8	y	0.53	19	17	19	17	y	0.48	12	13	12	13	y	0.22	2	7	2	7	y	0.32	8	17	8	17	y	0.30	6	14	6	14	y	0.20	4	16	4	16	y	0.0387541774416596	3.13767859815992	up	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10216	chr19	61106785	61115445	-	61106788	61115445	A3SS	ENSMUST00000127290.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.0377495513506237	5	up	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10540	chr2	129147241	129148039	+	129147241	129148080	A3SS	ENSMUST00000144178.2	novel	-	-	-	-	-	-	0.70	7	3	7	3	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.00663009524869736	4.54905237945447	up	ENSMUSG00000085498.2	Gm14023	chr2	lncRNA	predicted gene 14023
novel_NIR_10719	chr2	153187098	153187541	-	153184784	153187541	A3SS	ENSMUST00000128026.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0387968213685622	4.92800147686227	up	ENSMUSG00000073236.5	2500004C02Rik	chr2	lncRNA	RIKEN cDNA 2500004C02 gene
novel_NIR_10918	chr2	164721581	164724695	+	164722018	164724695	5pMXE	ENSMUST00000122810.2	novel	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.25	3	9	3	9	y	0.0244873621682829	3.08777982318254	up	ENSMUSG00000039849.7	Pcif1	chr2	protein_coding	phosphorylated CTD interacting factor 1
novel_NIR_10999	chr2	172971870	172972834	+	172971870	172973499	A3SS	ENSMUST00000142207.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.0156470487758018	4.97014925373134	up	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_11001	chr2	172971870	172979793	+	172971870	172973499	3pMXE	ENSMUST00000142207.8	novel	1.00	22	0	22	0	y	1.00	24	0	24	0	y	1.00	46	0	46	0	y	1.00	31	0	31	0	y	0.88	7	1	7	1	y	0.88	22	3	22	3	y	0.86	12	2	12	2	y	0.92	12	1	12	1	y	0.00276902794531063	9.13927326374879	up	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_11631	chr2	5850196	5852932	+	5850196	5859627	A3SS	ENSMUST00000026927.10	novel	0.08	3	35	3	35	n	0.15	4	22	4	22	y	0.07	7	96	7	96	n	0.08	4	46	4	46	n	0.00	0	32	0	32	n	0.04	2	44	2	44	n	0.03	1	35	1	35	n	0.00	0	40	0	40	n	0.0162369833918946	3.66187142395543	up	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
novel_NIR_11670	chr2	5932942	5934449	-	5930078	5934449	A3SS	ENSMUST00000151649.2	novel	0.50	4	4	4	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.0446477866610998	2.82296072823721	up	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_12351	chr3	157737285	157740409	-	157737285	157737628	A5SS&ES	ENSMUST00000137444.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.0377495513506237	5	up	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12501	chr3	57209057	57217679	-	57209057	57209149	5pMXE	ENSMUST00000196979.5	novel	0.75	3	1	3	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00146195568956408	26.125	up	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12549	chr3	79530985	79535522	-	79530985	79535788	A5SS	ENSMUST00000120992.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.55	6	5	6	5	y	0.71	5	2	5	2	y	0.50	2	2	2	2	y	0.33	2	4	2	4	y	0.57	4	3	4	3	y	0.33	1	2	1	2	n	0.0328402962446343	3.00694445373644	up	ENSMUSG00000027809.15	Etfdh	chr3	protein_coding	electron transferring flavoprotein, dehydrogenase
novel_NIR_12772	chr3	90414933	90416079	-	90414933	90416081	A5SS	ENSMUST00000131868.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.0387968213685622	4.92800147686227	up	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
novel_NIR_13031	chr4	108405367	108406426	+	108405367	108406423	A3SS	ENSMUST00000097925.9	novel	0.60	6	4	6	4	y	0.75	3	1	3	1	y	0.76	13	4	13	4	y	0.56	5	4	5	4	y	0.25	3	9	3	9	y	0.23	3	10	3	10	y	0.46	6	7	6	7	y	0.29	4	10	4	10	y	0.00267085389685883	4.91607894239222	up	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
novel_NIR_13370	chr4	135071980	135073627	-	135071980	135074046	A5SS	ENSMUST00000105861.8	novel	0.11	4	33	4	33	n	0.18	6	27	6	27	y	0.07	5	63	5	63	n	0.14	8	49	8	49	n	0.00	0	43	0	43	n	0.07	3	41	3	41	n	0.03	1	32	1	32	n	0.04	3	74	3	74	n	0.0217353801127683	3.286335345031	up	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
novel_NIR_14117	chr4	99104198	99106262	+	99104198	99106202	A3SS	ENSMUST00000030279.15	novel	0.10	3	26	3	26	n	0.20	2	8	2	8	y	0.11	2	17	2	17	n	0.22	6	21	6	21	y	0.00	0	11	0	11	n	0.00	0	40	0	40	n	0.10	2	18	2	18	n	0.04	1	26	1	26	n	0.0211708396735094	3.16513517366856	up	ENSMUSG00000028550.16	Atg4c	chr4	protein_coding	autophagy related 4C, cysteine peptidase
novel_NIR_14293	chr5	110429247	110431512	-	110425640	110431512	A3SS	ENSMUST00000155266.2	novel	1.00	9	0	9	0	y	1.00	3	0	3	0	n	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.69	9	4	9	4	y	0.73	11	4	11	4	y	0.80	4	1	4	1	y	0.80	4	1	4	1	y	0.0321218203915603	3.09581504558334	up	ENSMUSG00000029499.12	Pxmp2	chr5	protein_coding	peroxisomal membrane protein 2
novel_NIR_14369	chr5	115120440	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	8	2	8	2	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.82	9	2	9	2	y	0.00	0	4	0	4	n	0.048847626321252	2.80868019764122	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14696	chr5	137568221	137568334	+	137568196	137568334	A5SS	ENSMUST00000031729.13	novel	0.39	98	153	98	153	y	0.38	84	136	84	136	y	0.41	130	184	130	184	y	0.42	163	227	163	227	y	0.32	97	206	97	206	y	0.34	160	307	160	307	y	0.38	107	177	107	177	y	0.35	130	243	130	243	y	0.0167913084809633	3.39180598296644	up	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14697	chr5	137568221	137568334	+	137568215	137568334	A5SS	ENSMUST00000200190.5	novel	0.79	98	26	98	26	y	0.81	84	20	84	20	y	0.78	130	37	130	37	y	0.75	163	55	163	55	y	0.72	97	38	97	38	y	0.76	160	51	160	51	y	0.75	107	36	107	36	y	0.70	130	55	130	55	y	0.0364465914311174	2.68866428968932	up	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14699	chr5	137568221	137569250	+	137569041	137569250	5pMXE	ENSMUST00000196471.5	novel	0.38	6	10	6	10	y	0.33	4	8	4	8	y	0.40	4	6	4	6	y	0.33	10	20	10	20	y	0.17	2	10	2	10	y	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.19	3	13	3	13	y	0.0412902043925123	3.14660301333558	up	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14959	chr5	25498246	25499555	-	25498246	25503868	A5SS	ENSMUST00000172556.8	novel	0.86	6	1	6	1	y	0.83	5	1	5	1	y	0.78	7	2	7	2	y	0.91	10	1	10	1	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.80	4	1	4	1	y	0.0334178151872606	3.23330814607719	up	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_15291	chr5	77032048	77032159	-	77032048	77033894	A5SS	ENSMUST00000135697.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.83	5	1	5	1	y	0.83	5	1	5	1	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.0499113429148774	3.14516538465638	up	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15764	chr6	129210116	129210741	-	129210116	129210848	A5SS	ENSMUST00000181517.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.0321380422427239	3.04750599961338	up	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_16218	chr6	48815299	48815409	-	48815299	48818282	A5SS	ENSMUST00000205147.3	novel	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.11	2	16	2	16	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.0414147422804148	2.62612865719445	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_17101	chr7	136978080	136978662	-	136978080	137012369	A5SS	ENSMUST00000145881.8	novel	0.71	5	2	5	2	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.75	3	1	3	1	y	0.20	1	4	1	4	n	0.62	5	3	5	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.0124792259614582	3.97994974842648	up	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
novel_NIR_17882	chr7	45647849	45648074	-	45646398	45648074	A3SS	ENSMUST00000211780.2	novel	0.50	7	7	7	7	y	0.75	15	5	15	5	y	0.80	4	1	4	1	y	0.62	10	6	10	6	y	0.27	6	16	6	16	y	0.42	13	18	13	18	y	0.36	5	9	5	9	y	0.60	9	6	9	6	y	0.0391818169722402	2.62837716735337	up	ENSMUSG00000030834.8	Abcc6	chr7	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 6
novel_NIR_18678	chr8	123962560	123962889	-	123962588	123962889	A3SS	ENSMUST00000098327.2	novel	0.33	7	14	7	14	y	0.33	3	6	3	6	y	0.50	2	2	2	2	y	0.38	8	13	8	13	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00239851871853275	9.60003238336507	up	ENSMUSG00000033594.12	Spata2l	chr8	protein_coding	spermatogenesis associated 2-like
novel_NIR_18679	chr8	123962560	123962889	-	123962662	123962889	A3SS	ENSMUST00000212818.2	novel	0.78	7	2	7	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.89	8	1	8	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.000412032566846203	17.4235908370203	up	ENSMUSG00000033594.12	Spata2l	chr8	protein_coding	spermatogenesis associated 2-like
novel_NIR_18759	chr8	13419580	13420172	+	13419580	13420169	A3SS	ENSMUST00000210501.2	novel	0.73	8	3	8	3	y	0.57	4	3	4	3	y	0.75	3	1	3	1	y	0.43	6	8	6	8	y	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00732547911929884	4.58031771221469	up	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18776	chr8	20158175	20163110	+	20157999	20163110	A5SS	ENSMUST00000153748.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.44	4	5	4	5	y	0.043472540381087	2.99698113131085	up	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_19847	chr9	119191604	119193563	+	119188380	119193563	A5SS	ENSMUST00000215822.2	novel	0.86	18	3	18	3	y	0.78	7	2	7	2	y	0.69	24	11	24	11	y	0.72	18	7	18	7	y	0.50	12	12	12	12	y	0.39	13	20	13	20	y	0.65	11	6	11	6	y	0.62	18	11	18	11	y	0.0247105507837831	3.16048266781653	up	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_20136	chr9	34966945	35027572	-	34966945	35010195	5pMXE	ENSMUST00000214526.2	novel	0.50	2	2	2	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.0104441587574281	3.72058269380868	up	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20270	chr9	45843071	45843691	-	45843071	45847132	A5SS	ENSMUST00000034590.4	novel	0.18	2	9	2	9	y	0.09	1	10	1	10	n	0.25	1	3	1	3	n	0.13	2	13	2	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.0181008975161637	4.71146457312563	up	ENSMUSG00000032085.6	Tagln	chr9	protein_coding	transgelin
novel_NIR_20502	chr9	63124307	63142571	-	63124307;63124647	63124621;63142571	ES	ENSMUST00000034920.11	novel	0.37	13	22.5	13	27;18	y	0.26	12	34.0	12	33;35	y	0.26	8	23.0	8	26;20	y	0.32	17	36.0	17	40;32	y	0.11	4	32.0	4	36;28	n	0.25	14	41.5	14	41;42	y	0.22	11	38.5	11	41;36	y	0.20	9	37.0	9	42;32	y	0.0373246836127964	2.6753353724045	up	ENSMUSG00000058444.9	Map2k5	chr9	protein_coding	mitogen-activated protein kinase kinase 5
novel_NIR_20709	chr9	79665861	79666554	-	79665861	79666432	5pMXE	ENSMUST00000215933.2	novel	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.21	6	23	6	23	y	0.29	2	5	2	5	y	0.07	1	13	1	13	n	0.20	4	16	4	16	y	0.10	2	19	2	19	n	0.11	3	24	3	24	n	0.0279431204541904	2.8887415229139	up	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
