X.ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLPDCA_1.Ratio	CLPDCA_1.Alt_average_sj	CLPDCA_1.Model_average_sj	CLPDCA_1.Alt_sj	CLPDCA_1.Model_sj	CLPDCA_1.isfiltered	CLPDCA_2.Ratio	CLPDCA_2.Alt_average_sj	CLPDCA_2.Model_average_sj	CLPDCA_2.Alt_sj	CLPDCA_2.Model_sj	CLPDCA_2.isfiltered	CLPDCA_3.Ratio	CLPDCA_3.Alt_average_sj	CLPDCA_3.Model_average_sj	CLPDCA_3.Alt_sj	CLPDCA_3.Model_sj	CLPDCA_3.isfiltered	CLPDCA_4.Ratio	CLPDCA_4.Alt_average_sj	CLPDCA_4.Model_average_sj	CLPDCA_4.Alt_sj	CLPDCA_4.Model_sj	CLPDCA_4.isfiltered	Sham_1.Ratio	Sham_1.Alt_average_sj	Sham_1.Model_average_sj	Sham_1.Alt_sj	Sham_1.Model_sj	Sham_1.isfiltered	Sham_2.Ratio	Sham_2.Alt_average_sj	Sham_2.Model_average_sj	Sham_2.Alt_sj	Sham_2.Model_sj	Sham_2.isfiltered	Sham_3.Ratio	Sham_3.Alt_average_sj	Sham_3.Model_average_sj	Sham_3.Alt_sj	Sham_3.Model_sj	Sham_3.isfiltered	Sham_4.Ratio	Sham_4.Alt_average_sj	Sham_4.Model_average_sj	Sham_4.Alt_sj	Sham_4.Model_sj	Sham_4.isfiltered	Pvalue	Tvalue	DiffType	Gene	Symbol	Chr	GeneType	Description
known_NIR_377	chr1	16718231	16726520	-	16718231	16727216	A5SS	ENSMUST00000115352.10	known	0.04	1	25	1	25	n	0.10	3	26	3	26	y	0.12	6	42	6	42	y	0.12	3	21	3	21	y	0.26	6	17	6	17	y	0.22	5	18	5	18	y	0.17	3	15	3	15	y	0.22	7	25	7	25	y	0.00355832611663762	-4.63697018939236	down	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_380	chr1	16718231	16727136	-	16718231	16727216	A5SS	ENSMUST00000115352.10	known	0.19	6	25	6	25	y	0.28	10	26	10	26	y	0.25	14	42	14	42	y	0.25	7	21	7	21	y	0.39	11	17	11	17	y	0.51	19	18	19	18	y	0.32	7	15	7	15	y	0.43	19	25	19	25	y	0.0157386531003128	-3.87047304022074	down	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_488	chr1	178152878	178157433	-	178156972	178157433	A3SS	ENSMUST00000037748.9	known	0.01	6	404	6	404	y	0.01	6	422	6	422	y	0.01	7	615	7	615	y	0.03	15	433	15	433	y	0.05	20	414	20	414	y	0.02	11	518	11	518	y	0.05	25	505	25	505	y	0.04	21	535	21	535	y	0.0313774679281493	-2.88675134594813	down	ENSMUSG00000039630.11	Hnrnpu	chr1	protein_coding	heterogeneous nuclear ribonucleoprotein U
known_NIR_553	chr1	185064518	185070303	+	185064460	185070303	A5SS	ENSMUST00000027916.13	known	0.03	3	83	3	83	y	0.04	3	76	3	76	y	0.03	3	84	3	84	y	0.02	3	136	3	136	y	0.07	5	68	5	68	y	0.05	7	132	7	132	y	0.04	5	115	5	115	y	0.06	7	103	7	103	y	0.0216793077491661	-3.27326835353989	down	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_609	chr1	21310883;21315256	21315162;21319975	+	21310883	21319975	cassetteExon	ENSMUST00000027067.15	known	0.12	223.0	1706	131;315	1706	y	0.11	105.5	869	59;152	869	y	0.11	14.5	123	8;21	123	y	0.12	207.0	1464	132;282	1464	y	0.13	288.5	1888	170;407	1888	y	0.12	336.5	2413	204;469	2413	y	0.13	288.0	1944	160;416	1944	y	0.12	320.0	2289	193;447	2289	y	0.0498252627805766	-2.44948974278318	down	ENSMUSG00000025934.16	Gsta3	chr1	protein_coding	glutathione S-transferase, alpha 3
known_NIR_787	chr1	53360369	53362326	+	53360369;53360726	53360655;53362326	ES	ENSMUST00000027265.10	known	0.07	6	79.0	6	82;76	y	0.12	8	56.5	8	52;61	y	0.07	5	69.0	5	81;57	y	0.10	6	55.0	6	53;57	y	0.11	7	56.0	7	59;53	y	0.15	16	92.5	16	83;102	y	0.19	16	67.0	16	59;75	y	0.20	19	74.0	19	75;73	y	0.0299544623423321	-3.02895121362914	down	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
known_NIR_807	chr1	57417105	57419201	+	57417105	57421902	A3SS	ENSMUST00000042734.3	known	0.08	2	22	2	22	y	0.12	2	15	2	15	y	0.10	2	18	2	18	y	0.10	4	38	4	38	y	0.28	9	23	9	23	y	0.15	5	29	5	29	y	0.20	3	12	3	12	y	0.33	8	16	8	16	y	0.0372864080790204	-3.41226674755003	down	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
known_NIR_810	chr1	58002420	58004510	-	58002420	58004488	A5SS	ENSMUST00000114410.10	known	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.50	3	3	3	3	n	0.09	1	10	1	10	n	0.0322905888999756	-3.30536476602079	down	ENSMUSG00000054770.17	Kctd18	chr1	protein_coding	potassium channel tetramerisation domain containing 18
known_NIR_829	chr1	58750751	58752730	+	58750751	58752455	A3SS	ENSMUST00000149874.8	known	0.90	46	5	46	5	y	0.97	32	1	32	1	n	0.88	60	8	60	8	y	0.91	50	5	50	5	y	1.00	31	0	31	0	n	0.94	49	3	49	3	y	1.00	42	0	42	0	n	0.98	60	1	60	1	n	0.0383539656612115	-2.71068738274197	down	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_938	chr1	74431408	74432437	+	74431123	74432437	A5SS	ENSMUST00000027367.14	known	0.01	1	197	1	197	n	0.01	1	120	1	120	n	0.00	0	155	0	155	n	0.01	2	195	2	195	y	0.04	6	128	6	128	y	0.03	8	246	8	246	y	0.02	4	174	4	174	y	0.02	4	232	4	232	y	0.0166979601915548	-3.70328039909021	down	ENSMUSG00000026176.14	Ctdsp1	chr1	protein_coding	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
known_NIR_1069	chr1	87282208	87291826	+	87282208	87282693	3pMXE	ENSMUST00000174846.8	known	0.62	5	3	5	3	n	0.75	3	1	3	1	n	0.93	25	2	25	2	y	0.62	16	10	16	10	y	1.00	11	0	11	0	n	1.00	33	0	33	0	n	1.00	9	0	9	0	n	0.83	29	6	29	6	y	0.0454310969229394	-2.68305478167339	down	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1077	chr1	87437109	87468381	-	87437109	87437815	5pMXE	ENSMUST00000027477.15	known	0.79	30	8	30	8	y	0.90	26	3	26	3	y	0.75	3	1	3	1	n	0.80	40	10	40	10	y	0.89	33	4	33	4	y	0.96	54	2	54	2	y	0.96	53	2	53	2	y	0.86	37	6	37	6	y	0.0403624498244933	-2.64146900238599	down	ENSMUSG00000026259.15	Ngef	chr1	protein_coding	neuronal guanine nucleotide exchange factor
known_NIR_1296	chr10	120051554	120056656	+	120051554	120053409	3pMXE	ENSMUST00000156877.8	known	0.00	0	329	0	329	n	0.01	3	369	3	369	y	0.00	0	468	0	468	n	0.00	0	371	0	371	n	0.02	7	326	7	326	y	0.01	3	583	3	583	y	0.01	3	390	3	390	y	0.01	3	428	3	428	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
known_NIR_1297	chr10	120051554	120056656	+	120051554;120053514	120053409;120056656	ES	ENSMUST00000020446.11	known	0.00	0	349.5	0	329;370	n	0.01	3	386.0	3	369;403	y	0.00	0	477.0	0	468;486	n	0.00	0	414.0	0	371;457	n	0.02	7	353.5	7	326;381	y	0.01	3	563.5	3	583;544	y	0.01	3	403.5	3	390;417	y	0.01	3	459.5	3	428;491	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
known_NIR_1341	chr10	127120084	127120204	-	127120081	127120204	A3SS	ENSMUST00000126243.9	known	0.34	18	35	18	35	y	0.44	21	27	21	27	y	0.44	36	45	36	45	y	0.48	20	22	20	22	y	0.56	22	17	22	17	y	0.45	26	32	26	32	y	0.53	24	21	24	21	y	0.60	33	22	33	22	y	0.0452152869828269	-2.52357307257618	down	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
known_NIR_1344	chr10	127132502;127132609	127132586;127132742	-	127132502	127132742	cassetteExon	ENSMUST00000037290.12	known	0.12	19.5	138	22;17	138	y	0.07	12.0	158	13;11	158	y	0.04	8.5	201	8;9	201	y	0.05	5.5	114	6;5	114	y	0.16	20.5	111	22;19	111	y	0.13	22.5	156	25;20	156	y	0.20	37.5	149	40;35	149	y	0.15	23.0	133	24;22	133	y	0.00857222477619692	-3.89711431702997	down	ENSMUSG00000040354.15	Mars1	chr10	protein_coding	methionine-tRNA synthetase 1
known_NIR_1387	chr10	128087957	128088064	+	128087957	128088061	A3SS	ENSMUST00000055539.11	known	0.00	0	3	0	3	n	0.50	6	6	6	6	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	1.00	2	0	2	0	n	0.46	6	7	6	7	y	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.0158623233026516	-3.34608080865218	down	ENSMUSG00000039994.16	Timeless	chr10	protein_coding	timeless circadian clock 1
known_NIR_1401	chr10	128245217	128246283	-	128245217	128245605	5pMXE	ENSMUST00000026439.14	known	0.04	4	90	4	90	y	0.02	1	65	1	65	n	0.02	2	83	2	83	y	0.02	2	82	2	82	y	0.05	4	78	4	78	y	0.04	3	82	3	82	y	0.03	4	115	4	115	y	0.05	4	82	4	82	y	0.0448673860955738	-2.52810291480115	down	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
known_NIR_1407	chr10	128324228	128324765	+	128323886	128324765	A5SS	ENSMUST00000026433.9	known	0.93	96	7	96	7	y	0.94	92	6	92	6	y	0.94	100	6	100	6	y	0.96	89	4	89	4	y	0.99	81	1	81	1	n	0.96	152	7	152	7	y	0.98	109	2	109	2	y	0.97	99	3	99	3	y	0.0113037840257861	-3.60555127546399	down	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
known_NIR_1537	chr10	29230443	29237980	-	29230443	29237281	A5SS&ES	ENSMUST00000037548.11	known	0.17	3	15	3	15	y	0.16	4	21	4	21	y	0.08	2	24	2	24	y	0.34	10	19	10	19	y	0.33	4	8	4	8	y	0.40	10	15	10	15	y	0.48	13	14	13	14	y	0.46	11	13	11	13	y	0.015903325889664	-3.5792878782572	down	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1551	chr10	34273237	34274110	-	34200458	34274110	A3SS	ENSMUST00000105512.8	known	0.00	0	23	0	23	n	0.05	1	20	1	20	n	0.00	0	40	0	40	n	0.00	0	41	0	41	n	0.07	2	25	2	25	y	0.07	3	38	3	38	y	0.07	3	37	3	37	y	0.03	1	35	1	35	n	0.0265019779382493	-2.96730147588351	down	ENSMUSG00000039480.15	Nt5dc1	chr10	protein_coding	5'-nucleotidase domain containing 1
known_NIR_1752	chr10	75345538	75345866	-	75345667	75345866	A3SS	ENSMUST00000145890.8	known	0.00	0	162	0	162	n	0.00	0	155	0	155	n	0.01	1	146	1	146	n	0.02	3	177	3	177	y	0.03	4	125	4	125	y	0.02	4	210	4	210	y	0.02	3	145	3	145	y	0.02	4	179	4	179	y	0.0435576347221575	-2.77746029931765	down	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1772	chr10	75729518	75729604	+	75729518	75730873	A3SS	ENSMUST00000218506.2	known	0.91	31	3	31	3	y	0.88	38	5	38	5	y	0.94	146	10	146	10	y	0.93	14	1	14	1	n	0.96	79	3	79	3	y	0.97	87	3	87	3	y	0.93	93	7	93	7	y	1.00	29	0	29	0	n	0.0435590588198888	-2.55376959227624	down	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
known_NIR_1876	chr10	79894563	79894639	-	79894566	79894639	A3SS	ENSMUST00000219260.2	known	0.80	40	10	40	10	y	0.80	41	10	41	10	y	0.83	123	26	123	26	y	0.83	45	9	45	9	y	0.89	24	3	24	3	y	0.88	60	8	60	8	y	0.87	33	5	33	5	y	1.00	38	0	38	0	n	0.0468842378523586	-3.01675990694229	down	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1997	chr10	81323418	81323514	-	81323439	81323514	A3SS	ENSMUST00000020463.14	known	0.02	3	126	3	126	y	0.03	3	99	3	99	y	0.01	1	113	1	113	n	0.03	4	114	4	114	y	0.07	7	97	7	97	y	0.04	6	137	6	137	y	0.07	8	115	8	115	y	0.07	8	112	8	112	y	0.00613689009024312	-4.49561189559213	down	ENSMUSG00000020238.15	Ncln	chr10	protein_coding	nicalin
known_NIR_1998	chr10	81324189	81324262	-	81324192	81324262	A3SS	ENSMUST00000020463.14	known	0.27	35	95	35	95	y	0.25	33	100	33	100	y	0.25	40	121	40	121	y	0.26	36	104	36	104	y	0.29	36	88	36	88	y	0.36	69	123	69	123	y	0.35	51	94	51	94	y	0.32	53	112	53	112	y	0.0153777292936246	-4.38856946905627	down	ENSMUSG00000020238.15	Ncln	chr10	protein_coding	nicalin
known_NIR_2001	chr10	81412133	81412363	+	81412133	81412432	A3SS	ENSMUST00000140433.8	known	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.06	1	16	1	16	n	0.05	1	19	1	19	n	0.07	2	26	2	26	y	0.11	3	25	3	25	y	0.0117497512000286	-5.51340097956296	down	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
known_NIR_2053	chr10	88010795	88013996	+	88010795	88012935	3pMXE	ENSMUST00000219059.2	known	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.04	1	24	1	24	n	0.00	0	22	0	22	n	0.14	3	19	3	19	y	0.09	2	20	2	20	y	0.15	2	11	2	11	y	0.04	1	23	1	23	n	0.0260726550557365	-3.488343349764	down	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
known_NIR_2054	chr10	88010795	88013996	+	88010795;88013028	88012935;88013996	ES	ENSMUST00000052355.15	known	0.00	0	15.5	0	15;16	n	0.00	0	18.5	0	15;22	n	0.05	1	20.5	1	24;17	n	0.00	0	16.5	0	22;11	n	0.15	3	17.0	3	19;15	y	0.08	2	24.0	2	20;28	y	0.15	2	11.0	2	11;11	y	0.05	1	20.0	1	23;17	n	0.0244209949289398	-3.36753829022413	down	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
known_NIR_2454	chr11	116186515;116187624	116187556;116191092	-	116186515;116188489	116188397;116191092	MXE	ENSMUST00000106413.10	known	0.20	0.5	2.0	1;0	1;3	n	0.15	1.0	5.5	2;0	2;9	n	0.60	3.0	2.0	4;2	2;2	y	0.43	1.5	2.0	2;1	0;4	n	0.50	3.5	3.5	2;5	2;5	y	0.60	1.5	1.0	1;2	0;2	n	0.78	3.5	1.0	5;2	1;1	n	1.00	2.0	0.0	1;3	0;0	n	0.0484066223909302	-2.47222894823148	down	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2473	chr11	116741787;116742577	116742474;116742847	-	116741787	116742847	cassetteExon	ENSMUST00000092404.13	known	0.13	33.0	212	45;21	212	y	0.14	30.5	188	47;14	188	y	0.13	32.5	226	41;24	226	y	0.14	25.0	158	33;17	158	y	0.16	22.5	114	33;12	114	y	0.18	42.0	194	52;32	194	y	0.17	32.0	159	41;23	159	y	0.18	43.0	198	50;36	198	y	0.00118023553704492	-6.70820393249937	down	ENSMUSG00000034120.19	Srsf2	chr11	protein_coding	serine and arginine-rich splicing factor 2
known_NIR_2525	chr11	119891412;119893911	119893864;119897185	+	119891412	119897185	cassetteExon	ENSMUST00000026436.10	known	0.39	34.5	53	35;34	53	y	0.42	37.0	51	31;43	51	y	0.46	18.0	21	15;21	21	y	0.43	25.5	34	21;30	34	y	0.49	27.5	29	21;34	29	y	0.49	32.0	33	31;33	33	y	0.48	40.0	44	30;50	44	y	0.49	27.5	29	22;33	29	y	0.0210006513208514	-4.26660092991431	down	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
known_NIR_2679	chr11	29476565	29479929	+	29476843	29479929	A5SS&ES	ENSMUST00000133452.8	known	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.07	3	38	3	38	y	0.07	3	43	3	43	y	0.06	2	29	2	29	y	0.04	2	44	2	44	y	0.0230542637670071	-3.30747546315826	down	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2689	chr11	3076058;3077219	3077131;3077479	+	3076058	3077479	cassetteExon	ENSMUST00000145164.8	known	0.09	4.0	41	3;5	41	y	0.09	3.5	34	2;5	34	y	0.04	4.5	109	3;6	109	y	0.00	0.0	32	0;0	32	n	0.15	4.5	26	5;4	26	y	0.23	7.0	24	2;12	24	y	0.15	3.5	20	0;7	20	n	0.11	4.0	32	4;4	32	y	0.0202599332175825	-3.15394489822708	down	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
known_NIR_2798	chr11	4722638	4730578	-	4718273	4730578	A3SS	ENSMUST00000056290.13	known	0.04	1	25	1	25	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.03	1	32	1	32	n	0.08	2	22	2	22	y	0.10	2	19	2	19	y	0.22	5	18	5	18	y	0.11	2	16	2	16	y	0.0337929115000114	-3.3229241783491	down	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2816	chr11	49104469	49105891	+	49105481	49105891	A5SS&ES	ENSMUST00000180016.2	known	0.78	7	2	7	2	n	0.50	2	2	2	2	n	0.79	19	5	19	5	y	0.71	15	6	15	6	y	0.82	9	2	9	2	y	1.00	10	0	10	0	n	1.00	7	0	7	0	n	0.92	12	1	12	1	n	0.0292687967396568	-3.00784315063937	down	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2842	chr11	5014478;5015015	5014837;5015215	-	5014478	5015215	cassetteExon	ENSMUST00000122886.8	known	0.45	7.5	9	14;1	9	n	0.23	3.0	10	6;0	10	n	0.49	22.0	23	37;7	23	y	0.33	6.0	12	12;0	12	n	0.62	6.5	4	12;1	4	n	0.51	10.5	10	19;2	10	y	0.52	5.5	5	11;0	5	n	0.73	11.0	4	21;1	4	n	0.0314272501543785	-2.80914655150387	down	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2843	chr11	5014478;5015094	5014837;5015215	-	5014478	5015215	cassetteExon	ENSMUST00000122886.8	known	0.57	12.0	9	14;10	9	y	0.44	8.0	10	6;10	10	y	0.60	34.0	23	37;31	23	y	0.61	19.0	12	12;26	12	y	0.78	14.5	4	12;17	4	y	0.70	23.0	10	19;27	10	y	0.73	13.5	5	11;16	5	y	0.85	23.5	4	21;26	4	y	0.00675641612449793	-4.10530183844177	down	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2921	chr11	54356249	54356913	+	54329214	54356913	A5SS	ENSMUST00000046835.14	known	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.19	3	13	3	13	y	0.50	7	7	7	7	y	0.25	7	21	7	21	y	0.45	5	6	5	6	y	0.33	6	12	6	12	y	0.00622062661507142	-4.19833531503568	down	ENSMUSG00000035992.16	Fnip1	chr11	protein_coding	folliculin interacting protein 1
known_NIR_2988	chr11	59344471	59344654	+	59344471	59344618	A3SS	ENSMUST00000108777.10	known	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.00888864164383608	-6.09077671365564	down	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
known_NIR_3196	chr11	69983616	69983809	+	69983616	69983882	A3SS	ENSMUST00000102572.8	known	0.02	9	588	9	588	y	0.02	12	553	12	553	y	0.02	8	319	8	319	y	0.03	21	649	21	649	y	0.03	18	558	18	558	y	0.03	23	807	23	807	y	0.03	18	636	18	636	y	0.04	30	805	30	805	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
known_NIR_3209	chr11	70126294	70126850	-	70126294	70126823	A5SS	ENSMUST00000108575.9	known	0.81	22	5	22	5	y	0.76	34	11	34	11	y	0.75	38	13	38	13	y	0.82	27	6	27	6	y	0.88	21	3	21	3	y	0.83	30	6	30	6	y	0.85	22	4	22	4	y	0.90	35	4	35	4	y	0.0146257330638106	-3.41121146168976	down	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3423	chr11	79455772	79456244	+	79455772	79456247	A3SS	ENSMUST00000108251.9	known	0.73	11	4	11	4	y	0.80	8	2	8	2	y	0.81	21	5	21	5	y	0.71	10	4	10	4	y	0.87	13	2	13	2	y	0.91	21	2	21	2	y	1.00	9	0	9	0	n	0.88	23	3	23	3	y	0.00805948998020477	-3.94027031824045	down	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
known_NIR_3656	chr11	99276462	99276737	-	99276462	99276757	A5SS	ENSMUST00000103131.5	known	0.11	2	17	2	17	y	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.12	3	23	3	23	y	0.12	5	36	5	36	y	0.14	3	19	3	19	y	0.16	3	16	3	16	y	0.0264241624659688	-3.52608033187164	down	ENSMUSG00000019761.11	Krt10	chr11	protein_coding	keratin 10
known_NIR_3705	chr12	103403964	103405660	+	103401832	103405660	A5SS	ENSMUST00000076788.12	known	0.99	378	3	378	3	y	0.99	312	2	312	2	y	0.98	457	10	457	10	y	0.99	432	3	432	3	y	0.99	306	4	306	4	y	1.00	445	2	445	2	y	1.00	260	1	260	1	n	1.00	313	0	313	0	n	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3929	chr12	3823640;3824610	3824570;3829619	+	3823640	3829619	cassetteExon	ENSMUST00000173199.8	known	0.38	21.0	35	13;29	35	y	0.40	33.0	50	32;34	50	y	0.37	22.0	37	20;24	37	y	0.43	28.0	37	27;29	37	y	0.53	23.5	21	21;26	21	y	0.47	40.5	45	36;45	45	y	0.45	35.5	44	27;44	44	y	0.52	41.5	38	40;43	38	y	0.00771761083085671	-4.16531029887709	down	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_4105	chr12	76618416	76618821	+	76618416	76618824	A3SS	ENSMUST00000075249.6	known	0.30	16	37	16	37	y	0.35	8	15	8	15	y	0.33	14	28	14	28	y	0.28	12	31	12	31	y	0.47	16	18	16	18	y	0.47	27	31	27	31	y	0.43	16	21	16	21	y	0.47	34	39	34	39	y	0.000484603349399322	-7.84452582160666	down	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
known_NIR_4123	chr12	79235881	79237543	-	79235881	79238500	A5SS	ENSMUST00000161204.8	known	0.00	0	87	0	87	n	0.00	0	53	0	53	n	0.00	0	112	0	112	n	0.01	1	114	1	114	n	0.01	1	110	1	110	n	0.01	1	142	1	142	n	0.02	3	121	3	121	y	0.01	1	147	1	147	n	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000066441.15	Rdh11	chr12	protein_coding	retinol dehydrogenase 11
known_NIR_4361	chr13	104286691;104288690	104288673;104290804	-	104286691	104290804	cassetteExon	ENSMUST00000144060.8	known	0.52	26.0	24	28;24	24	y	0.51	14.5	14	14;15	14	y	0.43	26.5	35	28;25	35	y	0.42	24.0	33	28;20	33	y	0.57	21.0	16	22;20	16	y	0.68	39.5	19	40;39	19	y	0.53	17.0	15	16;18	15	y	0.59	32.0	22	34;30	22	y	0.0257233646741385	-2.98020596942929	down	ENSMUSG00000021711.18	Trappc13	chr13	protein_coding	trafficking protein particle complex 13
known_NIR_4559	chr13	34228510	34234264	+	34228510;34230935	34230769;34234264	ES	ENSMUST00000040656.8	known	0.01	3	440.5	3	460;421	y	0.01	4	364.5	4	349;380	y	0.02	3	149.5	3	156;143	y	0.01	7	464.5	7	492;437	y	0.02	10	412.0	10	425;399	y	0.02	11	661.0	11	687;635	y	0.03	13	455.5	13	478;433	y	0.03	15	504.5	15	542;467	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4560	chr13	34228510	34234264	+	34230935	34234264	A5SS&ES	ENSMUST00000222691.2	known	0.01	3	421	3	421	y	0.01	4	380	4	380	y	0.02	3	143	3	143	y	0.02	7	437	7	437	y	0.02	10	399	10	399	y	0.02	11	635	11	635	y	0.03	13	433	13	433	y	0.03	15	467	15	467	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4660	chr13	45147214	45149307	-	45147214	45155393	A5SS	ENSMUST00000072329.15	known	0.00	0	97	0	97	n	0.00	0	75	0	75	n	0.01	1	112	1	112	n	0.01	1	86	1	86	n	0.03	2	68	2	68	y	0.01	1	108	1	108	n	0.02	2	80	2	80	y	0.02	2	123	2	123	y	0.0273393097919095	-3	down	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
known_NIR_4669	chr13	46932469;46934140	46934102;46938722	-	46932469	46938722	cassetteExon	ENSMUST00000056978.8	known	0.86	12.5	2	12;13	2	y	0.86	6.0	1	9;3	1	n	0.79	11.0	3	12;10	3	y	0.83	15.0	3	13;17	3	y	1.00	6.5	0	6;7	0	n	1.00	18.5	0	17;20	0	n	1.00	11.0	0	12;10	0	n	1.00	10.0	0	12;8	0	n	0.0021599649447033	-9.94987437106621	down	ENSMUSG00000021375.12	Kif13a	chr13	protein_coding	kinesin family member 13A
known_NIR_4697	chr13	53063351	53073037	-	53052772	53073037	A3SS	ENSMUST00000137064.8	known	0.01	2	136	2	136	y	0.03	4	124	4	124	y	0.01	1	101	1	101	n	0.02	3	188	3	188	y	0.04	6	142	6	142	y	0.03	7	230	7	230	y	0.06	7	115	7	115	y	0.03	6	189	6	189	y	0.0439153235056009	-2.63493019696104	down	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4730	chr13	54832301	54835844	-	54832301	54841542	A5SS	ENSMUST00000037422.16	known	0.15	5	28	5	28	y	0.07	2	28	2	28	y	0.09	5	51	5	51	y	0.12	5	37	5	37	y	0.20	5	20	5	20	y	0.18	10	45	10	45	y	0.17	5	25	5	25	y	0.15	6	35	6	35	y	0.0218609552606592	-3.31510931173373	down	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4914	chr13	67065232	67070820	-	67065237	67070820	A3SS	ENSMUST00000021991.11	known	0.10	9	78	9	78	y	0.12	10	71	10	71	y	0.09	8	79	8	79	y	0.06	5	72	5	72	y	0.16	11	58	11	58	y	0.18	19	85	19	85	y	0.10	9	79	9	79	y	0.16	15	77	15	77	y	0.0395135202375172	-2.691946385511	down	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_5171	chr14	20406565;20413518	20413331;20424398	+	20406565;20409984	20408092;20424398	MXE	ENSMUST00000224079.2	known	0.50	23.0	23.0	3;43	45;1	n	0.47	18.0	20.5	1;35	39;2	n	0.45	17.0	21.0	2;32	42;0	n	0.53	23.5	21.0	1;46	41;1	n	0.53	21.0	19.0	2;40	37;1	n	0.57	37.5	28.5	14;61	53;4	y	0.59	22.5	15.5	4;41	31;0	n	0.54	28.0	23.5	6;50	47;0	n	0.0214742347461451	-3.1436209919735	down	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5268	chr14	26163789	26181197	-	26163789;26181109	26181059;26181197	ES	ENSMUST00000145738.8	known	0.68	25	12.0	25	3;21	y	0.65	18	9.5	18	3;16	y	0.67	39	19.0	39	4;34	y	0.75	38	13.0	38	1;25	n	0.73	27	10.0	27	5;15	y	0.76	48	15.5	48	8;23	y	0.79	32	8.5	32	3;14	y	0.86	52	8.5	52	2;15	y	0.0348628373032304	-2.76001742028327	down	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5275	chr14	26163789;26180615	26180565;26181197	-	26163789;26181109	26174693;26181197	MXE	ENSMUST00000090359.11	known	0.39	8.0	12.5	11;5	4;21	y	0.38	5.0	8.0	7;3	0;16	n	0.29	10.5	26.0	13;8	18;34	y	0.39	12.5	19.5	20;5	14;25	y	0.51	10.5	10.0	17;4	5;15	y	0.39	10.0	15.5	12;8	8;23	y	0.52	11.5	10.5	17;6	7;14	y	0.50	12.5	12.5	21;4	10;15	y	0.0245439115940087	-3.0275361440839	down	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5302	chr14	30437832	30487920	+	30460587	30487920	A5SS&ES	ENSMUST00000227201.2	known	0.50	4	4	4	4	n	0.67	8	4	8	4	y	0.47	9	10	9	10	y	0.40	4	6	4	6	y	0.71	5	2	5	2	n	0.62	10	6	10	6	y	0.67	8	4	8	4	y	0.75	9	3	9	3	y	0.0451525212863094	-2.78699378552495	down	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
known_NIR_5348	chr14	30961694	30962816	-	30961694;30962390	30962231;30962816	ES	ENSMUST00000226565.2	known	0.00	0	19.5	0	22;17	n	0.05	1	20.0	1	27;13	n	0.00	0	22.0	0	22;22	n	0.00	0	18.0	0	22;14	n	0.12	3	21.0	3	20;22	y	0.06	2	30.0	2	39;21	y	0.11	3	25.0	3	32;18	y	0.06	2	30.5	2	37;24	y	0.0112715826296641	-3.69274472937998	down	ENSMUSG00000021902.8	Phf7	chr14	protein_coding	PHD finger protein 7
known_NIR_5471	chr14	45567560	45568287	+	45567389	45568287	A5SS	ENSMUST00000022380.9	known	0.00	1	203	1	203	n	0.00	0	163	0	163	n	0.00	0	299	0	299	n	0.00	0	296	0	296	n	0.02	5	224	5	224	y	0.01	3	297	3	297	y	0.02	3	177	3	177	y	0.01	3	313	3	313	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5472	chr14	45567560	45568287	+	45567640	45568287	A5SS	ENSMUST00000227148.2	known	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.50	3	3	3	3	n	0.33	3	6	3	6	n	0.30	3	7	3	7	y	0.0204914431288315	-3.30058400114334	down	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5661	chr14	55841700	55842509	+	55841700;55842010	55841925;55842509	ES	ENSMUST00000134863.8	known	0.18	3	13.5	3	4;23	y	0.35	6	11.0	6	3;19	y	0.46	16	18.5	16	11;26	y	0.45	17	20.5	17	10;31	y	0.54	10	8.5	10	5;12	y	0.48	16	17.5	16	5;30	y	0.64	8	4.5	8	0;9	n	0.60	17	11.5	17	5;18	y	0.0426043699070128	-2.77899581938609	down	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5786	chr14	66965449	66969013	+	66965280	66969013	A5SS	ENSMUST00000159365.8	known	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.62	5	3	5	3	n	0.62	5	3	5	3	n	0.0128138380717826	-4.26542131383847	down	ENSMUSG00000045875.14	Adra1a	chr14	protein_coding	adrenergic receptor, alpha 1a
known_NIR_5863	chr14	75575637	75576749	+	75575010	75576749	A5SS	ENSMUST00000022577.6	known	0.00	0	24	0	24	n	0.06	3	49	3	49	y	0.02	3	174	3	174	y	0.09	5	49	5	49	y	0.19	6	26	6	26	y	0.28	15	38	15	38	y	0.28	7	18	7	18	y	0.20	6	24	6	24	y	0.000995529601691702	-6.12825877028341	down	ENSMUSG00000022000.12	Zc3h13	chr14	protein_coding	zinc finger CCCH type containing 13
known_NIR_5919	chr15	100308112	100310115	-	100308112	100310072	A5SS	ENSMUST00000023774.12	known	0.07	2	27	2	27	y	0.00	0	25	0	25	n	0.01	2	203	2	203	y	0.03	1	31	1	31	n	0.07	2	25	2	25	y	0.09	5	51	5	51	y	0.07	2	27	2	27	y	0.13	6	41	6	41	y	0.024846603929468	-2.98098237568937	down	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
known_NIR_6003	chr15	102396712	102398187	+	102396712	102398190	A3SS	ENSMUST00000231089.2	known	0.70	33	14	33	14	y	0.71	30	12	30	12	y	0.77	37	11	37	11	y	0.74	26	9	26	9	y	0.88	28	4	28	4	y	0.83	44	9	44	9	y	0.80	33	8	33	8	y	0.84	53	10	53	10	y	0.0033394624787636	-4.70102133515957	down	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6006	chr15	102396712;102397249	102397211;102398190	+	102396712	102398190	cassetteExon	ENSMUST00000231089.2	known	0.96	326.5	14	522;131	14	y	0.96	322.5	12	520;125	12	y	0.97	394.5	11	624;165	11	y	0.98	363.0	9	551;175	9	y	0.99	310.5	4	484;137	4	y	0.98	432.0	9	676;188	9	y	0.98	350.5	8	556;145	8	y	0.98	507.5	10	790;225	10	y	0.0435576347221585	-2.77746029931763	down	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6037	chr15	103152455	103154773	+	103152455	103152683	3pMXE	ENSMUST00000036004.16	known	0.19	30	126	30	126	y	0.15	27	159	27	159	y	0.17	41	207	41	207	y	0.14	18	112	18	112	y	0.32	37	79	37	79	y	0.18	36	162	36	162	y	0.28	42	107	42	107	y	0.33	61	126	61	126	y	0.0380441978985198	-3.19464986835028	down	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6038	chr15	103152455	103154773	+	103152455;103154393	103152683;103154773	ES	ENSMUST00000230489.2	known	0.32	30	63.0	30	126;0	n	0.25	27	79.5	27	159;0	n	0.28	41	103.5	41	207;0	n	0.24	18	56.0	18	112;0	n	0.48	37	40.5	37	79;2	y	0.31	36	81.0	36	162;0	n	0.44	42	53.5	42	107;0	n	0.49	61	63.5	61	126;1	n	0.0242890308395222	-3.48746478449386	down	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6106	chr15	31582183	31584111	+	31582219	31584111	A5SS	ENSMUST00000226951.2	known	0.03	15	481	15	481	y	0.04	17	437	17	437	y	0.04	9	208	9	208	y	0.04	24	575	24	575	y	0.04	20	436	20	436	y	0.05	43	757	43	757	y	0.05	27	510	27	510	y	0.05	24	444	24	444	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
known_NIR_6244	chr15	58011837	58014002	+	58011829	58014002	A5SS	ENSMUST00000067563.9	known	0.18	2	9	2	9	y	0.23	3	10	3	10	y	0.14	3	18	3	18	y	0.22	2	7	2	7	n	0.33	7	14	7	14	y	0.26	5	14	5	14	y	0.22	4	14	4	14	y	0.33	5	10	5	10	y	0.0377280504668406	-2.71054391230555	down	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6321	chr15	74827566;74829312	74829264;74829629	+	74827566	74829629	cassetteExon	ENSMUST00000189186.7	known	0.01	3.0	337	2;4	337	y	0.00	0.0	275	0;0	275	n	0.00	1.0	241	2;0	241	n	0.00	0.5	321	1;0	321	n	0.02	4.5	216	9;0	216	n	0.01	3.0	230	3;3	230	y	0.01	2.5	171	1;4	171	n	0.01	2.0	282	2;2	282	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6578	chr15	81882500	81883706	-	81882433	81883706	A3SS	ENSMUST00000146628.8	known	0.01	1	165	1	165	n	0.01	1	145	1	145	n	0.00	1	232	1	232	n	0.01	1	163	1	163	n	0.02	2	128	2	128	y	0.02	4	212	4	212	y	0.01	1	151	1	151	n	0.02	3	191	3	191	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022472.17	Desi1	chr15	protein_coding	desumoylating isopeptidase 1
known_NIR_6845	chr16	11224760	11231090	+	11221696	11231090	A5SS	ENSMUST00000180792.8	known	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.36	4	7	4	7	y	0.08	1	11	1	11	n	0.33	3	6	3	6	n	0.25	1	3	1	3	n	0.0357142559081495	-2.80287482511229	down	ENSMUSG00000071669.15	Snx29	chr16	protein_coding	sorting nexin 29
known_NIR_7176	chr16	31911303;31914526	31914371;31915818	-	31911303	31915818	cassetteExon	ENSMUST00000232321.2	known	0.07	3.0	40	5;1	40	n	0.09	3.0	32	4;2	32	y	0.12	6.0	43	8;4	43	y	0.10	4.0	36	3;5	36	y	0.14	4.0	25	5;3	25	y	0.17	8.5	43	11;6	43	y	0.16	6.5	34	9;4	34	y	0.15	6.5	37	9;4	37	y	0.00445361010917431	-4.89897948556636	down	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7201	chr16	32677415	32697633	-	32677415	32688463	5pMXE	ENSMUST00000115105.9	known	0.29	2	5	2	5	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.44	4	5	4	5	n	0.56	5	4	5	4	n	0.75	6	2	6	2	n	1.00	5	0	5	0	n	0.71	5	2	5	2	n	0.00972640452308893	-4.23063885066378	down	ENSMUSG00000035629.20	Rubcn	chr16	protein_coding	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
known_NIR_7258	chr16	3713664	3715115	+	3702670	3715115	A5SS	ENSMUST00000176625.8	known	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.36	5	9	5	9	y	0.23	3	10	3	10	y	0.38	3	5	3	5	n	0.52	15	14	15	14	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.0435347685873803	-2.68461874649444	down	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7274	chr16	38369998	38370445	-	38369795	38370445	A3SS	ENSMUST00000036210.7	known	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.11	2	17	2	17	y	0.33	2	4	2	4	n	0.24	5	16	5	16	y	0.18	2	9	2	9	y	0.17	4	20	4	20	y	0.0153761384210973	-3.35555364429482	down	ENSMUSG00000034064.15	Poglut1	chr16	protein_coding	protein O-glucosyltransferase 1
known_NIR_7320	chr16	4520172	4524432	+	4520172;4523824	4523708;4524432	ES	ENSMUST00000060067.12	known	0.86	295	47.5	295	45;50	y	0.86	263	41.5	263	39;44	y	0.83	330	68.5	330	79;58	y	0.85	233	42.0	233	45;39	y	0.87	223	33.0	223	26;40	y	0.90	355	38.0	355	36;40	y	0.87	273	40.5	273	46;35	y	0.92	286	26.5	286	26;27	y	0.0384775492642787	-2.82842712474619	down	ENSMUSG00000004069.18	Dnaja3	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member A3
known_NIR_7491	chr16	90535557	90544263	+	90535557	90543530	A3SS&ES	ENSMUST00000125429.3	known	0.15	5	28	5	28	y	0.21	6	22	6	22	y	0.30	15	35	15	35	y	0.19	5	22	5	22	y	0.36	8	14	8	14	y	0.39	12	19	12	19	y	0.52	12	11	12	11	y	0.32	6	13	6	13	y	0.015692887665257	-3.44777031076234	down	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7494	chr16	90535557	90544412	+	90535557;90543614	90543530;90544412	ES	ENSMUST00000125429.3	known	0.92	271	23.5	271	28;19	y	0.92	213	18.0	213	22;14	y	0.93	502	35.0	502	35;35	y	0.93	222	16.5	222	22;11	y	0.93	187	14.5	187	14;15	y	0.94	262	16.5	262	19;14	y	0.96	258	11.5	258	11;12	y	0.95	198	10.5	198	13;8	y	0.0453983125632169	-2.82842712474618	down	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_8036	chr17	31378061	31379624	+	31378061	31380395	A3SS	ENSMUST00000148215.9	known	0.06	1	15	1	15	n	0.00	0	23	0	23	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.10	3	26	3	26	y	0.21	4	15	4	15	y	0.27	4	11	4	11	y	0.0137880867867873	-4.21225391019494	down	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
known_NIR_8151	chr17	33165977	33166310	-	33165977	33166287	A5SS	ENSMUST00000075253.13	known	0.00	0	102	0	102	n	0.00	0	66	0	66	n	0.00	0	71	0	71	n	0.00	0	147	0	147	n	0.02	2	113	2	113	y	0.01	1	146	1	146	n	0.02	2	131	2	131	y	0.01	2	162	2	162	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8313	chr17	35340774	35342029	+	35340774	35341205	3pMXE	ENSMUST00000177018.2	known	0.83	10	2	10	2	y	0.70	14	6	14	6	y	0.82	18	4	18	4	y	0.81	13	3	13	3	y	1.00	10	0	10	0	n	0.90	18	2	18	2	y	0.86	24	4	24	4	y	0.93	13	1	13	1	n	0.0202857006350757	-3.13213097911219	down	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8408	chr17	44413555	44416602	-	44413555	44416540	A5SS	ENSMUST00000024757.14	known	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.44	7	9	7	9	y	0.62	8	5	8	5	y	-	-	-	-	-	-	0.75	3	1	3	1	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.0344875405205249	-2.8894472361809	down	ENSMUSG00000023961.17	Enpp4	chr17	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 4
known_NIR_8613	chr17	64600019	64615617	-	64604904	64615617	3pMXE	ENSMUST00000232842.2	known	0.34	12	23	12	23	y	0.26	9	25	9	25	y	0.16	13	69	13	69	y	0.27	17	45	17	45	y	0.39	14	22	14	22	y	0.38	18	30	18	30	y	0.35	7	13	7	13	y	0.37	23	40	23	40	y	0.0496743900818855	-3.02439647920053	down	ENSMUSG00000024083.17	Pja2	chr17	protein_coding	praja ring finger ubiquitin ligase 2
known_NIR_8624	chr17	66418726	66420858	+	66418644	66420858	A5SS	ENSMUST00000072383.14	known	0.19	4	17	4	17	y	0.12	3	21	3	21	y	0.00	0	24	0	24	n	0.26	6	17	6	17	y	0.39	7	11	7	11	y	0.42	10	14	10	14	y	0.46	6	7	6	7	y	0.29	6	15	6	15	y	0.0126852206613291	-3.73562741683872	down	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
known_NIR_8694	chr17	74922352	74925431	+	74922325	74925431	A5SS	ENSMUST00000180037.8	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.11	2	16	2	16	y	0.0483153826866759	-2.57951318670681	down	ENSMUSG00000024073.17	Birc6	chr17	protein_coding	baculoviral IAP repeat-containing 6
known_NIR_8738	chr17	83527585	83528482	+	83527585	83528395	A3SS	ENSMUST00000170794.8	known	0.00	0	35	0	35	n	0.00	0	44	0	44	n	0.00	0	59	0	59	n	0.00	0	47	0	47	n	0.07	3	40	3	40	y	0.03	2	59	2	59	y	0.02	1	49	1	49	n	0.03	2	57	2	57	y	0.0430149067349815	-3.38240712601273	down	ENSMUSG00000024247.15	Pkdcc	chr17	protein_coding	protein kinase domain containing, cytoplasmic
known_NIR_8753	chr17	84990722	84994048	+	84990722	84994045	A3SS	ENSMUST00000045714.15	known	0.57	43	32	43	32	y	0.56	39	31	39	31	y	0.49	59	61	59	61	y	0.58	68	49	68	49	y	0.64	63	35	63	35	y	0.64	77	43	77	43	y	0.74	82	29	82	29	y	0.66	121	61	121	61	y	0.0090807867135966	-3.82675682485969	down	ENSMUSG00000024254.16	Abcg8	chr17	protein_coding	ATP binding cassette subfamily G member 8
known_NIR_8754	chr17	84994149;84996116	84995960;84999228	+	84994149	84999228	cassetteExon	ENSMUST00000170725.8	known	0.89	56.5	7	54;59	7	y	0.91	48.0	5	46;50	5	y	0.94	91.5	6	83;100	6	y	0.93	95.0	7	94;96	7	y	0.96	88.5	4	81;96	4	y	0.96	118.0	5	104;132	5	y	0.97	75.0	2	84;66	2	y	0.95	134.5	7	132;137	7	y	0.0248919711132918	-3.59726264087885	down	ENSMUSG00000024254.16	Abcg8	chr17	protein_coding	ATP binding cassette subfamily G member 8
known_NIR_8990	chr18	35695345	35710611	+	35690422	35710611	A5SS	ENSMUST00000237592.2	known	-	-	-	-	-	-	0.83	5	1	5	1	n	0.80	8	2	8	2	y	0.78	7	2	7	2	n	0.91	10	1	10	1	n	1.00	10	0	10	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	0.00152333348261103	-6.50273603894973	down	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_9175	chr18	60659437	60659673	+	60659437	60667665	A3SS	ENSMUST00000223984.2	known	0.23	6	20	6	20	y	0.20	3	12	3	12	y	0.18	6	27	6	27	y	0.28	12	31	12	31	y	0.47	8	9	8	9	y	0.28	12	31	12	31	y	0.45	9	11	9	11	y	0.39	13	20	13	20	y	0.0179880585157322	-3.65231199928332	down	ENSMUSG00000024603.9	Dctn4	chr18	protein_coding	dynactin 4
known_NIR_9200	chr18	61713558	61715107	+	61713558	61720497	A3SS	ENSMUST00000165721.8	known	0.00	0	64	0	64	n	0.00	0	55	0	55	n	0.00	0	84	0	84	n	0.00	0	61	0	61	n	0.02	1	40	1	40	n	0.04	4	104	4	104	y	0.04	2	49	2	49	y	0.04	3	69	3	69	y	0.00598625569770709	-7	down	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9299	chr18	7920250	7921425	+	7920250	7921422	A3SS	ENSMUST00000171042.8	known	0.02	2	83	2	83	y	0.04	3	79	3	79	y	0.04	6	130	6	130	y	0.02	2	88	2	88	y	0.05	3	58	3	58	y	0.06	8	122	8	122	y	0.11	10	82	10	82	y	0.07	10	133	10	133	y	0.0401359275851754	-2.95932015124686	down	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9311	chr18	80299618	80299997	+	80298625	80299997	A5SS	ENSMUST00000131780.8	known	0.74	51	18	51	18	y	0.69	58	26	58	26	y	0.62	26	16	26	16	y	0.74	62	22	62	22	y	0.84	64	12	64	12	y	0.83	100	20	100	20	y	0.76	84	26	84	26	y	0.88	99	14	99	14	y	0.0141829723714225	-3.43876037058376	down	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9500	chr19	34277582	34284525	+	34268144	34284525	A5SS	ENSMUST00000025691.13	known	0.02	1	40	1	40	n	0.03	1	37	1	37	n	0.08	7	81	7	81	y	0.07	4	55	4	55	y	0.11	4	34	4	34	y	0.08	4	48	4	48	y	0.08	4	44	4	44	y	0.14	9	55	9	55	y	0.0433448167645503	-2.55288883019029	down	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
known_NIR_9660	chr19	41951473	41951840	-	41951517	41951840	A3SS	ENSMUST00000167927.8	known	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.03	1	38	1	38	n	0.03	1	29	1	29	n	0.03	1	28	1	28	n	0.07	2	26	2	26	y	0.07	4	51	4	51	y	0.0262276848894054	-3.08666041661089	down	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9677	chr19	4242270	4242749	+	4242270	4242744	A3SS	ENSMUST00000046094.6	known	0.00	0	389	0	389	n	0.00	0	308	0	308	n	0.00	0	403	0	403	n	0.00	0	421	0	421	n	0.01	4	300	4	300	y	0.03	17	524	17	524	y	0.03	11	391	11	391	y	0.01	5	389	5	389	y	0.040519326353834	-3.46410161513775	down	ENSMUSG00000040385.8	Ppp1ca	chr19	protein_coding	protein phosphatase 1 catalytic subunit alpha
known_NIR_9706	chr19	44110399	44110599	-	44110399	44111583	A5SS	ENSMUST00000026218.7	known	0.16	3	16	3	16	y	0.00	0	20	0	20	n	0.03	1	30	1	30	n	0.18	6	27	6	27	y	0.31	9	20	9	20	y	0.19	8	34	8	34	y	0.31	5	11	5	11	y	0.25	8	24	8	24	y	0.0231482495010623	-3.21365038654509	down	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9726	chr19	44978118	44980577	+	44977796	44980577	A5SS	ENSMUST00000026225.15	known	0.01	2	195	2	195	y	0.00	0	134	0	134	n	0.00	0	72	0	72	n	0.01	2	287	2	287	y	0.01	2	211	2	211	y	0.01	4	299	4	299	y	0.02	4	205	4	205	y	0.02	7	280	7	280	y	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
known_NIR_9727	chr19	44978118	44980577	+	44979797	44980577	A5SS&ES	ENSMUST00000236662.2	known	0.02	2	87	2	87	y	0.00	0	59	0	59	n	0.00	0	21	0	21	n	0.03	2	78	2	78	y	0.03	2	70	2	70	y	0.04	4	101	4	101	y	0.06	4	61	4	61	y	0.06	7	111	7	111	y	0.0164113195774773	-3.29983164553722	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
known_NIR_9860	chr19	53920636;53922001	53921922;53931897	-	53920636	53931897	cassetteExon	ENSMUST00000135402.4	known	0.00	0.0	61	0;0	61	n	0.00	0.0	72	0;0	72	n	0.03	3.5	107	3;4	107	y	0.01	1.0	69	1;1	69	n	0.03	1.5	45	1;2	45	n	0.03	2.5	88	3;2	88	y	0.04	2.5	66	3;2	66	y	0.03	1.5	45	0;3	45	n	0.0435462967323529	-3	down	ENSMUSG00000084957.4	Bbip1	chr19	protein_coding	BBSome interacting protein 1
known_NIR_9909	chr19	56286483	56297269	+	56286483;56295315	56295205;56297269	ES	ENSMUST00000078284.13	known	0.10	25	218.5	25	199;238	y	0.10	24	207.0	24	194;220	y	0.09	21	223.5	21	202;245	y	0.11	40	334.0	40	297;371	y	0.14	36	215.5	36	197;234	y	0.12	44	314.5	44	318;311	y	0.15	35	201.0	35	186;216	y	0.12	50	374.5	50	337;412	y	0.0144681911003896	-3.80601028449928	down	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
known_NIR_10145	chr2	103885371	103886346	+	103885371	103890227	A3SS	ENSMUST00000028603.10	known	0.24	43	139	43	139	y	0.23	30	98	30	98	y	0.28	34	87	34	87	y	0.21	56	213	56	213	y	0.27	50	132	50	132	y	0.30	96	224	96	224	y	0.28	55	141	55	141	y	0.30	80	185	80	185	y	0.0397647993828423	-2.87526965214031	down	ENSMUSG00000027180.13	Fbxo3	chr2	protein_coding	F-box protein 3
known_NIR_10236	chr2	120202113;120205040	120204969;120205900	-	120202113;120204460	120204392;120205900	MXE	ENSMUST00000090042.12	known	0.35	3.0	5.5	3;3	6;5	y	0.36	4.5	8.0	4;5	9;7	y	0.33	6.5	13.0	7;6	15;11	y	0.31	4.5	10.0	4;5	9;11	y	0.38	4.5	7.5	3;6	8;7	y	0.52	7.0	6.5	10;4	8;5	y	0.40	5.0	7.5	10;0	9;6	n	0.43	6.5	8.5	7;6	10;7	y	0.0479357314217437	-2.89187384976149	down	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
known_NIR_10338	chr2	125684679	125686730	-	125684631	125686730	A3SS	ENSMUST00000028635.6	known	0.00	0	75	0	75	n	0.03	1	34	1	34	n	0.00	0	117	0	117	n	0.02	2	95	2	95	y	0.05	3	61	3	61	y	0.03	3	102	3	102	y	0.04	2	52	2	52	y	0.04	3	76	3	76	y	0.0261377052147607	-3.22047024073016	down	ENSMUSG00000027206.14	Cops2	chr2	protein_coding	COP9 signalosome subunit 2
known_NIR_10346	chr2	126500497	126517276	-	126500497	126504911	A5SS&ES	ENSMUST00000039978.13	known	0.50	5	5	5	5	y	0.62	5	3	5	3	n	0.54	7	6	7	6	y	0.58	7	5	7	5	y	0.92	11	1	11	1	n	0.78	14	4	14	4	y	0.75	6	2	6	2	n	0.81	13	3	13	3	y	0.00193869150655168	-5.64349001875938	down	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
known_NIR_10354	chr2	127282522	127286337	-	127282522;127284044	127283794;127286337	ES	ENSMUST00000028848.4	known	0.00	0	67.5	0	80;55	n	0.00	0	46.0	0	59;33	n	0.04	1	25.0	1	23;27	n	0.00	0	40.5	0	40;41	n	0.06	3	43.5	3	44;43	y	0.03	2	75.0	2	96;54	y	0.04	3	68.0	3	70;66	y	0.05	3	63.5	3	62;65	y	0.0312486966326853	-2.94058817645882	down	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10355	chr2	127282522	127286337	-	127284044	127286337	A3SS&ES	ENSMUST00000137502.2	known	0.00	0	55	0	55	n	0.00	0	33	0	33	n	0.04	1	27	1	27	n	0.00	0	41	0	41	n	0.07	3	43	3	43	y	0.04	2	54	2	54	y	0.04	3	66	3	66	y	0.04	3	65	3	65	y	0.0263443679144878	-3	down	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10447	chr2	132691923	132703129	+	132691923;132696942	132696813;132703129	ES	ENSMUST00000028835.13	known	0.01	1	171.0	1	168;174	n	0.00	0	175.5	0	162;189	n	0.00	0	176.5	0	178;175	n	0.00	0	177.5	0	190;165	n	0.01	2	149.0	2	148;150	y	0.02	6	248.0	6	228;268	y	0.02	3	175.5	3	176;175	y	0.02	4	203.0	4	195;211	y	0.00542395034130874	-4.24264068711929	down	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10448	chr2	132691923;132703214	132703129;132704255	+	132691923	132704255	cassetteExon	ENSMUST00000110122.10	known	0.96	114.5	5	1;228	5	n	0.94	101.5	7	0;203	7	n	0.98	120.0	3	0;240	3	n	0.98	93.0	2	0;186	2	n	1.00	89.0	0	2;176	0	n	0.98	157.5	4	6;309	4	y	1.00	109.5	0	3;216	0	n	1.00	124.5	0	4;245	0	n	0.0435576347221575	-2.77746029931765	down	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10477	chr2	145664285	145686631	+	145664285	145664530	3pMXE	ENSMUST00000150449.2	known	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.62	8	5	8	5	y	0.80	4	1	4	1	n	0.64	16	9	16	9	y	0.50	4	4	4	4	n	0.75	6	2	6	2	n	0.046524981533916	-2.52129123175065	down	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
known_NIR_10974	chr2	24949085	24950151	+	24949085;24949706	24949617;24950151	ES	ENSMUST00000100334.11	known	0.02	4	157.5	4	146;169	y	0.01	2	153.0	2	140;166	y	0.02	3	177.5	3	156;199	y	0.02	5	204.0	5	194;214	y	0.03	4	146.0	4	139;153	y	0.03	6	233.5	6	226;241	y	0.03	6	176.5	6	167;186	y	0.03	5	173.0	5	149;197	y	0.0153924380733023	-5	down	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_11111	chr2	28359340	28359435	+	28358962	28359435	A5SS	ENSMUST00000038600.4	known	0.01	1	82	1	82	n	0.00	0	59	0	59	n	0.00	0	79	0	79	n	0.02	2	83	2	83	y	0.03	2	65	2	65	y	0.02	2	93	2	93	y	0.03	2	73	2	73	y	0.04	3	66	3	66	y	0.0121941868183737	-3.57623736407562	down	ENSMUSG00000035772.12	Mrps2	chr2	protein_coding	mitochondrial ribosomal protein S2
known_NIR_11115	chr2	28568217	28568979	+	28568217	28568964	A3SS	ENSMUST00000028155.12	known	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.11	1	8	1	8	n	0.50	4	4	4	4	n	0.30	3	7	3	7	y	0.36	5	9	5	9	y	0.18	4	18	4	18	y	0.0195537542373961	-3.36324387994287	down	ENSMUSG00000026812.17	Tsc1	chr2	protein_coding	TSC complex subunit 1
known_NIR_11139	chr2	29952787	29958281	+	29952292	29958281	A5SS	ENSMUST00000134364.8	known	0.05	2	41	2	41	y	0.00	0	30	0	30	n	0.05	2	41	2	41	y	0.03	1	34	1	34	n	0.13	6	40	6	40	y	0.08	3	33	3	33	y	0.05	2	37	2	37	y	0.08	3	35	3	35	y	0.0459173307484601	-2.57841835357068	down	ENSMUSG00000054766.14	Set	chr2	protein_coding	SET nuclear oncogene
known_NIR_11197	chr2	31473272	31482478	+	31473272	31482475	A3SS	ENSMUST00000113482.8	known	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.05	1	18	1	18	n	0.10	2	18	2	18	y	0.09	3	31	3	31	y	0.13	2	13	2	13	y	0.05	2	41	2	41	y	0.00957775937166043	-3.86168633620382	down	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
known_NIR_11218	chr2	32177657	32178043	-	32177657	32177898	5pMXE	ENSMUST00000140406.8	known	0.02	13	547	13	547	y	0.02	11	618	11	618	y	0.01	9	691	9	691	y	0.01	7	518	7	518	y	0.03	13	443	13	443	y	0.03	21	795	21	795	y	0.03	23	637	23	637	y	0.03	19	603	19	603	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000044627.12	Swi5	chr2	protein_coding	SWI5 recombination repair homolog (yeast)
known_NIR_11360	chr2	38954735	38955437	-	38954735	38955393	A5SS	ENSMUST00000039165.15	known	0.29	2	5	2	5	n	0.00	0	8	0	8	n	0.28	5	13	5	13	y	0.17	2	10	2	10	y	0.50	5	5	5	5	y	0.38	6	10	6	10	y	0.71	5	2	5	2	n	0.55	6	5	6	5	y	0.0107653225509749	-3.64570147440878	down	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
known_NIR_11412	chr2	52047936	52049489	-	52041468	52049489	A3SS	ENSMUST00000135200.2	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.0198039411803931	-7	down	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11477	chr2	6118924	6134853	-	6134640	6134853	3pMXE	ENSMUST00000194054.2	known	0.69	18	8	18	8	y	0.72	13	5	13	5	y	0.86	32	5	32	5	y	0.70	23	10	23	10	y	1.00	27	0	27	0	n	0.83	24	5	24	5	y	0.89	24	3	24	3	y	0.86	25	4	25	4	y	0.0309561441565915	-2.80874454808474	down	ENSMUSG00000045319.14	Proser2	chr2	protein_coding	proline and serine rich 2
known_NIR_11513	chr2	69700924	69701025	+	69700924	69701022	A3SS	ENSMUST00000090852.11	known	0.05	12	232	12	232	y	0.08	14	170	14	170	y	0.06	16	245	16	245	y	0.04	8	171	8	171	y	0.08	14	172	14	172	y	0.07	17	234	17	234	y	0.11	21	178	21	178	y	0.10	23	197	23	197	y	0.0408278529113471	-2.6	down	ENSMUSG00000068882.14	Ssb	chr2	protein_coding	Sjogren syndrome antigen B
known_NIR_11729	chr2	92209060	92209141	+	92209018	92209141	A5SS	ENSMUST00000155891.8	known	0.01	4	284	4	284	y	0.02	5	229	5	229	y	0.01	3	202	3	202	y	0.01	2	287	2	287	y	0.02	4	239	4	239	y	0.02	10	403	10	403	y	0.03	9	321	9	321	y	0.02	8	327	8	327	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
known_NIR_11802	chr3	106413168;106427395	106427325;106440671	-	106413168;106438594	106420119;106440671	MXE	ENSMUST00000068301.11	known	0.35	42.5	77.5	85;0	13;142	n	0.35	30.5	57.5	61;0	10;105	n	0.38	43.5	70.5	85;2	18;123	y	0.40	50.0	74.0	100;0	2;146	n	0.40	38.5	58.0	76;1	6;110	n	0.43	67.0	90.0	134;0	5;175	n	0.39	46.0	72.5	92;0	6;139	n	0.43	76.5	101.0	153;0	11;191	n	0.0388344486409511	-2.6549539521063	down	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11819	chr3	107577636;107578560	107578454;107579358	-	107577636	107579358	cassetteExon	ENSMUST00000138091.8	known	0.90	96.5	11	74;119	11	y	0.93	63.0	5	68;58	5	y	0.94	129.0	8	97;161	8	y	0.94	127.5	8	114;141	8	y	0.96	85.0	4	70;100	4	y	0.94	123.5	8	105;142	8	y	0.97	67.5	2	53;82	2	y	0.97	128.5	4	92;165	4	y	0.036034606460202	-2.75084790184853	down	ENSMUSG00000027893.15	Ahcyl1	chr3	protein_coding	S-adenosylhomocysteine hydrolase-like 1
known_NIR_11948	chr3	135144323	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.25	3	9	3	9	y	0.46	6	7	6	7	y	0.38	3	5	3	5	n	0.50	3	3	3	3	n	0.14	1	6	1	6	n	0.0497314835603461	-2.4751702481767	down	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11977	chr3	137923661	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	known	0.16	4	21	4	21	y	0.33	13	26	13	26	y	0.00	0	7	0	7	n	0.22	11	39	11	39	y	0.45	15	18	15	18	y	0.29	22	55	22	55	y	0.45	18	22	18	22	y	0.39	14	22	14	22	y	0.0425526001188048	-2.77017622355764	down	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_12097	chr3	154797195	154798572	-	154797195	154798936	A5SS	ENSMUST00000066568.6	known	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.09	2	21	2	21	y	0.41	7	10	7	10	y	0.33	5	10	5	10	y	0.61	11	7	11	7	y	0.25	7	21	7	21	y	0.0144906707966776	-4.23918154207853	down	ENSMUSG00000053870.8	Fpgt	chr3	protein_coding	fucose-1-phosphate guanylyltransferase
known_NIR_12112	chr3	157728587;157729868	157729760;157732362	-	157728587	157732362	cassetteExon	ENSMUST00000121326.8	known	0.10	2.5	22	1;4	22	n	0.03	0.5	18	0;1	18	n	0.07	2.5	31	1;4	31	n	0.04	1.5	32	0;3	32	n	0.13	2.0	13	0;4	13	n	0.09	4.0	43	0;8	43	n	0.13	3.5	23	0;7	23	n	0.13	5.5	36	0;11	36	n	0.0233483930529083	-3.20713490294909	down	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12196	chr3	37459640	37463657	-	37459643	37463657	A3SS	ENSMUST00000108118.9	known	0.14	6	38	6	38	y	0.21	6	22	6	22	y	0.12	5	37	5	37	y	0.14	4	24	4	24	y	0.23	5	17	5	17	y	0.27	15	40	15	40	y	0.38	19	31	19	31	y	0.23	10	34	10	34	y	0.0297903940856764	-3.08118011256661	down	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
known_NIR_12197	chr3	37466564;37469841	37469800;37470850	-	37466564	37470850	cassetteExon	ENSMUST00000052645.13	known	0.11	2.5	20	3;2	20	y	0.24	6.0	19	5;7	19	y	0.22	7.5	27	9;6	27	y	0.33	7.0	14	8;6	14	y	0.50	10.0	10	7;13	10	y	0.27	15.0	41	18;12	41	y	0.42	11.5	16	10;13	16	y	0.40	11.5	17	10;13	17	y	0.0393669226784879	-2.62615084795125	down	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
known_NIR_12384	chr3	88358804	88358995	-	88358774	88358995	A3SS	ENSMUST00000184487.8	known	0.44	4	5	4	5	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.28	5	13	5	13	y	0.50	3	3	3	3	n	0.39	7	11	7	11	y	0.50	2	2	2	2	n	0.50	8	8	8	8	y	0.045472732504999	-2.88564212348799	down	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12387	chr3	88362153	88363441	-	88362153	88362855	5pMXE	ENSMUST00000029700.12	known	0.15	17	97	17	97	y	0.15	15	87	15	87	y	0.14	15	94	15	94	y	0.12	17	123	17	123	y	0.21	22	82	22	82	y	0.16	26	140	26	140	y	0.22	15	53	15	53	y	0.21	33	125	33	125	y	0.0135035931131035	-3.92792202424786	down	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12388	chr3	88362153	88363441	-	88362153;88362991	88362855;88363441	ES	ENSMUST00000141471.2	known	0.25	17	51.5	17	97;6	y	0.25	15	46.0	15	87;5	y	0.23	15	51.5	15	94;9	y	0.20	17	67.5	17	123;12	y	0.31	22	49.5	22	82;17	y	0.26	26	75.0	26	140;10	y	0.34	15	28.5	15	53;4	y	0.32	33	69.0	33	125;13	y	0.0135444367707095	-3.62033094019108	down	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12454	chr3	89303389	89305266	+	89301700	89305266	A5SS	ENSMUST00000126926.2	known	0.42	15	21	15	21	y	0.31	8	18	8	18	y	0.44	7	9	7	9	y	0.55	23	19	23	19	y	0.61	28	18	28	18	y	0.68	27	13	27	13	y	0.60	26	17	26	17	y	0.62	21	13	21	13	y	0.0215756317370834	-3.77333046706596	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12487	chr3	89909783	89910552	-	89909780	89910552	A3SS	ENSMUST00000198322.5	known	0.79	38	10	38	10	y	0.76	39	12	39	12	y	0.79	49	13	49	13	y	0.80	37	9	37	9	y	0.81	48	11	48	11	y	0.82	62	14	62	14	y	0.84	63	12	63	12	y	0.82	60	13	60	13	y	0.0148331193466641	-3.50324524872685	down	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12596	chr3	95247376	95247473	-	95247373	95247473	A3SS	ENSMUST00000124638.8	known	0.80	16	4	16	4	y	0.77	10	3	10	3	y	0.91	20	2	20	2	y	0.83	24	5	24	5	y	1.00	25	0	25	0	n	0.97	33	1	33	1	n	0.94	15	1	15	1	n	0.90	36	4	36	4	y	0.0172915689034089	-3.38642730739298	down	ENSMUSG00000015697.15	Setdb1	chr3	protein_coding	SET domain, bifurcated 1
known_NIR_12738	chr4	108405367	108406423	+	108405367	108406438	A3SS	ENSMUST00000043368.12	known	0.25	4	12	4	12	y	0.17	1	5	1	5	n	0.14	4	25	4	25	y	0.17	4	19	4	19	y	0.33	9	18	9	18	y	0.48	10	11	10	11	y	0.39	7	11	7	11	y	0.26	10	28	10	28	y	0.0211598065865971	-3.49206357461506	down	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
known_NIR_12868	chr4	119028239	119030860	-	119028239	119031335	A5SS	ENSMUST00000106355.5	known	0.20	2	8	2	8	y	0.33	5	10	5	10	y	0.33	5	10	5	10	y	0.15	2	11	2	11	y	0.38	3	5	3	5	n	0.62	8	5	8	5	y	0.50	6	6	6	6	y	0.55	6	5	6	5	y	0.00904415596294345	-3.8077105348787	down	ENSMUSG00000045268.14	Zfp691	chr4	protein_coding	zinc finger protein 691
known_NIR_13204	chr4	137049930	137056024	-	137048503	137056024	A3SS	ENSMUST00000051477.13	known	0.01	4	402	4	402	y	0.01	5	380	5	380	y	0.03	16	553	16	553	y	0.01	3	414	3	414	y	0.03	10	285	10	285	y	0.03	16	489	16	489	y	0.04	18	386	18	386	y	0.03	13	475	13	475	y	0.0307597787889486	-3.13049516849971	down	ENSMUSG00000006699.18	Cdc42	chr4	protein_coding	cell division cycle 42
known_NIR_13233	chr4	137944051	137949400	+	137944051;137949034	137948837;137949400	ES	ENSMUST00000105827.8	known	0.11	5	38.5	5	24;53	y	0.18	7	31.0	7	21;41	y	0.14	9	54.0	9	27;81	y	0.19	15	65.0	15	44;86	y	0.28	16	40.5	16	25;56	y	0.27	22	60.0	22	54;66	y	0.19	10	41.5	10	33;50	y	0.24	20	62.5	20	34;91	y	0.0168820712138868	-3.286335345031	down	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13234	chr4	137944051	137949400	+	137949034	137949400	A5SS&ES	ENSMUST00000105826.8	known	0.09	5	53	5	53	y	0.15	7	41	7	41	y	0.10	9	81	9	81	y	0.15	15	86	15	86	y	0.22	16	56	16	56	y	0.25	22	66	22	66	y	0.17	10	50	10	50	y	0.18	20	91	20	91	y	0.0154388551876306	-3.37391097412544	down	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13317	chr4	148234123	148236071	-	148234123	148236470	A5SS	ENSMUST00000168503.8	known	0.41	42	60	42	60	y	0.40	35	52	35	52	y	0.33	52	104	52	104	y	0.52	44	41	44	41	y	0.60	36	24	36	24	y	0.53	58	51	58	51	y	0.51	36	34	36	34	y	0.61	41	26	41	26	y	0.0242394959800406	-3.17033288269591	down	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13348	chr4	148709833	148710502	-	148709833	148711138	A5SS	ENSMUST00000165113.8	known	0.00	0	153	0	153	n	0.00	0	98	0	98	n	0.01	2	234	2	234	y	0.00	0	211	0	211	n	0.01	1	164	1	164	n	0.01	2	167	2	167	y	0.01	1	159	1	159	n	0.02	3	163	3	163	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13463	chr4	156028470;156030874	156030712;156033464	+	156028470	156033464	cassetteExon	ENSMUST00000103175.8	known	0.84	54.0	10	21;87	10	y	0.78	40.0	11	15;65	11	y	0.82	89.5	19	26;153	19	y	0.84	42.5	8	16;69	8	y	0.93	42.5	3	13;72	3	y	0.85	61.5	11	22;101	11	y	0.89	63.0	8	23;103	8	y	0.90	71.5	8	28;115	8	y	0.0162933969997207	-3.33384724379117	down	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13573	chr4	41771213	41773465	-	41771235	41773465	A3SS	ENSMUST00000136768.8	known	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.24	4	13	4	13	y	0.19	3	13	3	13	y	0.30	3	7	3	7	y	0.0452770745908208	-2.69589189490556	down	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13593	chr4	43037206	43045648	-	43037206	43039966	5pMXE	ENSMUST00000107958.8	known	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.10	2	19	2	19	y	0.13	2	13	2	13	y	0.33	6	12	6	12	y	0.52	11	10	11	10	y	0.50	5	5	5	5	y	0.48	11	12	11	12	y	0.00254923082419365	-6.95858609672737	down	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13653	chr4	45853366;45855629	45855375;45858147	+	45853366	45858147	cassetteExon	ENSMUST00000107782.8	known	0.39	7.0	11	0;14	11	n	0.45	9.0	11	0;18	11	n	0.32	13.0	28	3;23	28	y	0.39	13.0	20	4;22	20	y	0.59	11.5	8	2;21	8	y	0.47	11.5	13	2;21	13	y	0.48	7.5	8	0;15	8	n	0.44	15.5	20	3;28	20	y	0.0453084986221186	-2.5471001743641	down	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
known_NIR_13835	chr4	97909191	97951250	+	97909191;97929916	97929788;97951250	ES	ENSMUST00000075448.13	known	0.00	0	17.0	0	14;20	n	0.00	0	14.0	0	6;22	n	0.09	5	53.0	5	37;69	y	0.00	0	25.0	0	25;25	n	0.10	2	17.5	2	13;22	y	0.15	6	35.0	6	34;36	y	0.05	1	17.5	1	16;19	n	0.16	6	32.5	6	40;25	y	0.0346618686760871	-2.73015027208521	down	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13836	chr4	97909191	97951250	+	97929916	97951250	A5SS&ES	ENSMUST00000107057.8	known	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.07	5	69	5	69	y	0.00	0	25	0	25	n	0.08	2	22	2	22	y	0.14	6	36	6	36	y	0.05	1	19	1	19	n	0.19	6	25	6	25	y	0.0442344582546065	-2.72387815350136	down	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13939	chr5	108731015;108732244	108732098;108733207	-	108731015	108733207	cassetteExon	ENSMUST00000156110.8	known	0.85	72.0	13	67;77	13	y	0.82	69.5	15	75;64	15	y	0.87	108.0	16	97;119	16	y	0.84	92.5	17	107;78	17	y	0.89	63.0	8	76;50	8	y	0.89	104.0	13	113;95	13	y	0.87	76.5	11	83;70	11	y	0.86	79.5	13	87;72	13	y	0.0483750678819886	-2.53332222960036	down	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13958	chr5	110144499	110154810	+	110144499	110151219	3pMXE	ENSMUST00000142180.2	known	0.25	5	15	5	15	y	0.50	4	4	4	4	n	0.33	7	14	7	14	y	0.35	8	15	8	15	y	0.47	9	10	9	10	y	0.53	9	8	9	8	y	0.60	9	6	9	6	y	0.65	11	6	11	6	y	0.0222594472620661	-3.13382153136672	down	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
known_NIR_14028	chr5	114584367	114588302	+	114584367	114588338	A3SS	ENSMUST00000137167.8	known	0.20	18	71	18	71	y	0.17	9	43	9	43	y	0.16	13	66	13	66	y	0.23	21	70	21	70	y	0.35	28	51	28	51	y	0.25	29	88	29	88	y	0.24	28	89	28	89	y	0.27	26	72	26	72	y	0.0309007567565041	-2.96156766846422	down	ENSMUSG00000041939.15	Mvk	chr5	protein_coding	mevalonate kinase
known_NIR_14087	chr5	121522167	121522820	-	121522167	121523372	A5SS	ENSMUST00000152265.8	known	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.00	0	45	0	45	n	0.02	1	43	1	43	n	0.04	2	44	2	44	y	0.02	1	59	1	59	n	0.04	1	26	1	26	n	0.07	5	65	5	65	y	0.0272485570955982	-3.27326835353989	down	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14270	chr5	129792958	129793791	+	129793005	129793791	A5SS	ENSMUST00000119604.8	known	0.76	16	5	16	5	y	0.68	17	8	17	8	y	0.78	21	6	21	6	y	0.67	22	11	22	11	y	0.82	18	4	18	4	y	0.81	21	5	21	5	y	0.76	16	5	16	5	y	0.88	29	4	29	4	y	0.0435762376867536	-2.55808652053164	down	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14461	chr5	139216593	139219226	+	139216593;139216992	139216882;139219226	ES	ENSMUST00000058716.14	known	0.19	2	8.5	2	4;13	y	0.10	1	9.5	1	9;10	n	0.08	1	11.0	1	12;10	n	0.19	2	8.5	2	7;10	y	0.29	2	5.0	2	3;7	y	0.24	3	9.5	3	7;12	y	0.24	2	6.5	2	7;6	y	0.21	2	7.5	2	7;8	y	0.0277562842632609	-3.1304951684997	down	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14462	chr5	139216593	139219226	+	139216992	139219226	5pMXE	ENSMUST00000126108.2	known	0.13	2	13	2	13	y	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.17	2	10	2	10	y	0.22	2	7	2	7	n	0.20	3	12	3	12	y	0.25	2	6	2	6	n	0.20	2	8	2	8	y	0.00749292108502086	-4.33333333333333	down	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14512	chr5	143084255	143098654	-	143084260	143098654	A3SS	ENSMUST00000053498.13	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.33	1	2	1	2	n	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.07	1	14	1	14	n	0.0266432078716156	-4.07692307692308	down	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
known_NIR_14797	chr5	33424381;33426978	33426786;33432123	-	33424381	33432123	cassetteExon	ENSMUST00000079746.10	known	0.87	76.0	11	113;39	11	y	0.92	48.0	4	66;30	4	y	0.91	103.0	10	140;66	10	y	0.89	83.5	10	114;53	10	y	0.92	54.5	5	91;18	5	y	0.97	111.5	3	161;62	3	y	0.92	73.0	6	112;34	6	y	0.95	88.0	5	117;59	5	y	0.0425591175828314	-2.57260968875712	down	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14813	chr5	33879272	33879650	+	33879298	33879650	A5SS	ENSMUST00000201437.4	known	0.80	8	2	8	2	y	0.78	7	2	7	2	n	0.89	8	1	8	1	n	0.77	10	3	10	3	y	1.00	13	0	13	0	n	0.86	19	3	19	3	y	0.90	9	1	9	1	n	0.92	22	2	22	2	y	0.0341044237721342	-2.73578801855594	down	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_15118	chr5	92221137	92231388	-	92221137	92231194	A5SS	ENSMUST00000167918.8	known	0.93	42	3	42	3	y	0.87	20	3	20	3	y	0.89	111	14	111	14	y	0.94	64	4	64	4	y	0.93	41	3	41	3	y	0.97	56	2	56	2	y	0.98	42	1	42	1	n	0.99	66	1	66	1	n	0.0311474533453959	-2.84161333666989	down	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
known_NIR_15529	chr6	145160510	145160910	+	145157202	145160910	A5SS	ENSMUST00000111725.8	known	0.50	2	2	2	2	n	0.57	4	3	4	3	n	0.29	2	5	2	5	n	0.33	1	2	1	2	n	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.86	6	1	6	1	n	0.71	10	4	10	4	y	0.0408474852526867	-2.73209303927019	down	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
known_NIR_15531	chr6	145166450;145170923	145170800;145177821	-	145166450	145177821	cassetteExon	ENSMUST00000032399.12	known	0.34	20.0	38	25;15	38	y	0.41	21.5	31	24;19	31	y	0.31	46.5	103	53;40	103	y	0.44	24.0	30	26;22	30	y	0.46	23.5	28	16;31	28	y	0.52	35.0	32	35;35	32	y	0.44	26.0	33	24;28	33	y	0.46	40.5	48	38;43	48	y	0.0430814972439715	-2.73294081846669	down	ENSMUSG00000030265.15	Kras	chr6	protein_coding	Kirsten rat sarcoma viral oncogene homolog
known_NIR_15577	chr6	149043202	149048656	+	149043202	149045532	3pMXE	ENSMUST00000111547.2	known	0.06	2	33	2	33	y	0.10	4	35	4	35	y	0.01	1	68	1	68	n	0.06	3	50	3	50	y	0.17	8	40	8	40	y	0.20	12	49	12	49	y	0.09	3	32	3	32	y	0.14	9	57	9	57	y	0.0226370613849837	-3.10133309706048	down	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15799	chr6	48420421	48421905	-	48420421	48422287	A5SS	ENSMUST00000101443.10	known	0.06	1	16	1	16	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.04	1	22	1	22	n	0.29	5	12	5	12	y	0.06	2	29	2	29	y	0.22	8	28	8	28	y	0.29	11	27	11	27	y	0.0429364480746792	-3.18052182252302	down	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15959	chr6	71828864	71829747	+	71828864	71829714	A3SS	ENSMUST00000064062.13	known	0.62	73	44	73	44	y	0.55	32	26	32	26	y	0.55	73	60	73	60	y	0.55	58	47	58	47	y	0.65	51	27	51	27	y	0.58	91	67	91	67	y	0.64	71	40	71	40	y	0.64	96	55	96	55	y	0.044995962979899	-2.5298221281347	down	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15995	chr6	72338522	72339259	-	72338522	72339224	A5SS	ENSMUST00000069580.12	known	0.08	16	190	16	190	y	0.10	16	138	16	138	y	0.12	27	190	27	190	y	0.10	23	208	23	208	y	0.12	23	177	23	177	y	0.16	49	252	49	252	y	0.14	33	200	33	200	y	0.14	32	203	32	203	y	0.013399964712331	-3.46410161513776	down	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_16235	chr6	93678362	93684985	-	93678362;93681341	93681258;93684985	ES	ENSMUST00000089317.12	known	0.93	19	1.5	19	1;2	n	0.91	15	1.5	15	1;2	n	0.94	16	1.0	16	0;2	n	0.91	21	2.0	21	1;3	n	1.00	17	0.0	17	0;0	n	0.97	33	1.0	33	2;0	n	1.00	15	0.0	15	0;0	n	0.95	21	1.0	21	0;2	n	0.0103999256116085	-4.00378608698105	down	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16361	chr7	101885761	101886329	+	101885749	101886329	A5SS	ENSMUST00000120879.8	known	0.46	40	47	40	47	y	0.49	32	33	32	33	y	0.47	33	37	33	37	y	0.55	41	34	41	34	y	0.58	44	32	44	32	y	0.55	48	40	48	40	y	0.56	41	32	41	32	y	0.56	39	31	39	31	y	0.0348408961677054	-3.3152155594482	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16450	chr7	114152045	114153826	-	114152588	114153826	A3SS	ENSMUST00000032908.15	known	0.09	5	48	5	48	y	0.11	2	17	2	17	y	0.10	4	35	4	35	y	0.07	4	55	4	55	y	0.18	12	54	12	54	y	0.14	9	57	9	57	y	0.11	5	41	5	41	y	0.16	8	43	8	43	y	0.0256841547760603	-3.19771044853596	down	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16485	chr7	118449912	118452112	-	118449912	118451626	A5SS	ENSMUST00000116280.9	known	0.09	4	43	4	43	y	0.12	6	44	6	44	y	0.17	11	55	11	55	y	0.19	13	54	13	54	y	0.24	13	41	13	41	y	0.23	14	47	14	47	y	0.17	10	48	10	48	y	0.21	11	41	11	41	y	0.049761213968791	-2.53500088919052	down	ENSMUSG00000030980.18	Knop1	chr7	protein_coding	lysine rich nucleolar protein 1
known_NIR_16608	chr7	126498095	126521982	-	126496110	126521982	A3SS	ENSMUST00000121612.4	known	0.97	100	3	100	3	y	0.97	75	2	75	2	y	0.97	67	2	67	2	y	0.98	99	2	99	2	y	1.00	84	0	84	0	n	0.99	129	1	129	1	n	1.00	133	0	133	0	n	0.98	169	3	169	3	y	0.0166979601915548	-3.70328039909021	down	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16759	chr7	130511358	130512562	+	130511465	130512562	A5SS	ENSMUST00000120441.8	known	0.67	2	1	2	1	n	0.60	3	2	3	2	n	0.76	16	5	16	5	y	0.50	2	2	2	2	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00682975995813157	-6.68412027256067	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16811	chr7	136978080	137012369	-	136989430	137012369	3pMXE	ENSMUST00000135335.2	known	0.07	2	25	2	25	y	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.03	1	28	1	28	n	0.12	4	28	4	28	y	0.08	3	36	3	36	y	0.18	5	23	5	23	y	0.07	2	25	2	25	y	0.0313836531726146	-2.92004831031453	down	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16919	chr7	140877529;140881599	140881513;140890675	-	140877529	140890675	cassetteExon	ENSMUST00000209600.2	known	0.81	21.5	5	39;4	5	y	0.78	29.0	8	54;4	8	y	0.81	17.0	4	31;3	4	y	0.85	22.5	4	42;3	4	y	0.86	19.0	3	35;3	3	y	0.91	31.0	3	62;0	3	n	0.86	18.0	3	32;4	3	y	0.96	22.5	1	45;0	1	n	0.0292446638273291	-3.04511531353531	down	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_17027	chr7	143030042	143033457	+	143030042;143033119	143033022;143033457	ES	ENSMUST00000052348.12	known	0.01	4	319.5	4	332;307	y	0.01	2	218.0	2	205;231	y	0.00	0	71.0	0	73;69	n	0.00	0	380.5	0	368;393	n	0.02	5	295.5	5	263;328	y	0.02	8	371.5	8	371;372	y	0.02	6	297.0	6	289;305	y	0.01	4	427.5	4	425;430	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
known_NIR_17189	chr7	25415612;25416424	25416279;25418343	-	25415612	25418343	cassetteExon	ENSMUST00000002683.3	known	0.15	5.5	32	7;4	32	y	0.16	6.5	34	6;7	34	y	0.08	5.0	54	5;5	54	y	0.08	3.0	34	3;3	34	y	0.19	7.0	29	10;4	29	y	0.16	6.5	35	7;6	35	y	0.24	7.0	22	8;6	22	y	0.17	6.0	30	8;4	30	y	0.0432424404063804	-2.58011474249358	down	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17275	chr7	28938036	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.49	30	31	30	31	y	0.66	31	16	31	16	y	0.52	28	26	28	26	y	0.67	51	25	51	25	y	0.84	67	13	67	13	y	0.72	67	26	67	26	y	0.81	57	13	57	13	y	0.74	88	31	88	31	y	0.0170703214007076	-3.52558780801635	down	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17498	chr7	44117583	44117730	+	44117614	44117730	A5SS	ENSMUST00000118493.8	known	0.12	2	14	2	14	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.12	3	22	3	22	y	0.09	1	10	1	10	n	0.12	3	22	3	22	y	0.25	6	18	6	18	y	0.0499194973432915	-2.46585883012693	down	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17504	chr7	44117583;44117841	44117730;44118234	+	44117583	44118234	cassetteExon	ENSMUST00000120852.8	known	0.50	3.0	3	2;4	3	n	0.33	1.0	2	0;2	2	n	0.50	1.0	1	0;2	1	n	0.33	2.0	4	0;4	4	n	0.67	2.0	1	3;1	1	n	0.69	4.5	2	1;8	2	n	0.60	3.0	2	3;3	2	n	0.80	4.0	1	6;2	1	n	0.00553495282789659	-4.28174419288837	down	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17632	chr7	44663759	44664889	-	44663759	44665504	A5SS	ENSMUST00000210056.2	known	0.60	3	2	3	2	n	0.83	5	1	5	1	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.0406614728757668	-3.45927815627787	down	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17680	chr7	44781836	44783322	-	44781836	44783306	A5SS	ENSMUST00000209467.2	known	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.17	4	20	4	20	y	0.06	1	17	1	17	n	0.17	4	19	4	19	y	0.0395241031029359	-2.62121638708301	down	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
known_NIR_17710	chr7	45124799	45125029	-	45115695	45125029	A3SS	ENSMUST00000210701.2	known	0.98	162	4	162	4	y	0.98	117	2	117	2	y	0.98	44	1	44	1	n	0.99	202	2	202	2	y	0.99	151	1	151	1	n	1.00	266	1	266	1	n	1.00	150	0	150	0	n	0.99	230	2	230	2	y	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000109926.2	Gm45808	chr7	protein_coding	predicted gene 45808
known_NIR_17804	chr7	46558711	46560493	-	46558816	46560493	A3SS	ENSMUST00000014546.15	known	0.06	3	49	3	49	y	0.03	1	38	1	38	n	0.00	0	85	0	85	n	0.05	2	42	2	42	y	0.08	4	44	4	44	y	0.10	8	70	8	70	y	0.14	7	44	7	44	y	0.08	5	59	5	59	y	0.0153969766739728	-3.35658556671309	down	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17963	chr7	67971653	67999982	+	67971653;67979147	67978970;67999982	ES	ENSMUST00000125685.9	known	0.03	1	30.5	1	28;33	n	0.00	0	26.0	0	24;28	n	0.00	0	20.5	0	16;25	n	0.00	0	54.5	0	48;61	n	0.05	1	20.5	1	15;26	n	0.06	3	45.5	3	43;48	y	0.03	1	31.5	1	28;35	n	0.02	1	41.0	1	32;50	n	0.0345486933283661	-2.75084790184853	down	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
known_NIR_17971	chr7	7243206	7270218	-	7243206;7247293	7244891;7270218	ES	ENSMUST00000210333.2	known	0.20	1	4.0	1	4;4	n	0.00	0	1.5	0	2;1	n	0.00	0	2.0	0	2;2	n	0.55	3	2.5	3	5;0	n	0.33	2	4.0	2	7;1	n	0.71	5	2.0	5	4;0	n	0.80	10	2.5	10	4;1	n	0.74	7	2.5	7	3;2	y	0.0357404167324223	-2.72447349376884	down	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_18090	chr7	89604812	89605552	-	89604812	89605463	A5SS	ENSMUST00000238981.2	known	0.11	5	40	5	40	y	0.10	7	62	7	62	y	0.06	4	62	4	62	y	0.03	1	33	1	33	n	0.15	8	44	8	44	y	0.14	11	66	11	66	y	0.16	7	38	7	38	y	0.15	10	58	10	58	y	0.0241636668790748	-3.96202907846531	down	ENSMUSG00000030619.11	Eed	chr7	protein_coding	embryonic ectoderm development
known_NIR_18140	chr7	98002337	98002684	-	98002337	98010449	A5SS	ENSMUST00000206414.2	known	0.59	54	38	54	38	y	0.62	46	28	46	28	y	0.59	40	28	40	28	y	0.60	41	27	41	27	y	0.83	24	5	24	5	y	0.66	50	26	50	26	y	0.68	27	13	27	13	y	0.71	10	4	10	4	y	0.0488234088053509	-3.09838667696593	down	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18152	chr7	98240091	98243959	-	98240091;98242873	98242538;98243959	ES	ENSMUST00000205911.2	known	0.14	1	6.0	1	12;0	n	0.14	1	6.0	1	11;1	n	0.14	2	12.0	2	21;3	y	0.31	2	4.5	2	9;0	n	0.38	4	6.5	4	13;0	n	0.30	3	7.0	3	14;0	n	0.28	4	10.5	4	19;2	y	0.29	2	5.0	2	9;1	n	0.0469671412358776	-2.69366181126889	down	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18155	chr7	98243192	98243959	-	98243017	98243959	A3SS	ENSMUST00000205276.2	known	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.50	5	5	5	5	y	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.0431547434070984	-2.88230676849157	down	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18205	chr8	105777247	105778364	+	105777247	105778100	3pMXE	ENSMUST00000212329.2	known	0.09	129	1370	129	1370	y	0.08	89	1045	89	1045	y	0.04	12	303	12	303	y	0.06	144	2089	144	2089	y	0.11	209	1725	209	1725	y	0.10	231	2194	231	2194	y	0.12	211	1564	211	1564	y	0.11	204	1611	204	1611	y	0.0248919711132919	-3.59726264087885	down	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18206	chr8	105777247	105778364	+	105777247;105778253	105778100;105778364	ES	ENSMUST00000093222.13	known	0.05	129	2510.5	129	1370;3651	y	0.05	89	1794.0	89	1045;2543	y	0.02	12	492.0	12	303;681	y	0.04	144	3444.5	144	2089;4800	y	0.07	209	2943.0	209	1725;4161	y	0.06	231	3627.0	231	2194;5060	y	0.07	211	2646.0	211	1564;3728	y	0.07	204	2645.0	204	1611;3679	y	0.024125660645063	-3.66666666666667	down	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18311	chr8	112185678	112187215	-	112185681	112187215	A3SS	ENSMUST00000038193.15	known	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.08	2	23	2	23	y	0.00	0	9	0	9	n	0.18	4	18	4	18	y	0.19	5	21	5	21	y	0.11	1	8	1	8	n	0.21	4	15	4	15	y	0.0102984007330902	-3.73615512236711	down	ENSMUSG00000031959.16	Wdr59	chr8	protein_coding	WD repeat domain 59
known_NIR_18695	chr8	3565556;3566568	3566507;3566681	+	3565556	3566681	cassetteExon	ENSMUST00000004681.14	known	0.53	4.5	4	1;8	4	n	0.47	3.5	4	3;4	4	y	0.46	11.0	13	10;12	13	y	0.38	8.0	13	2;14	13	y	0.56	5.0	4	3;7	4	y	0.71	10.0	4	7;13	4	y	0.85	5.5	1	4;7	1	n	0.71	17.0	7	11;23	7	y	0.0166857321731838	-3.70757913705204	down	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18912	chr8	70962284	70968045	-	70962284	70962768	5pMXE	ENSMUST00000129909.8	known	0.01	2	185	2	185	y	0.02	4	235	4	235	y	0.01	2	280	2	280	y	0.01	2	197	2	197	y	0.02	4	167	4	167	y	0.03	8	267	8	267	y	0.03	8	242	8	242	y	0.02	5	243	5	243	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_19060	chr8	84456886	84460043	-	84456886;84458666	84458532;84460043	ES	ENSMUST00000075843.13	known	0.00	0	2.5	0	3;2	n	0.00	0	2.0	0	1;3	n	0.19	2	8.5	2	10;7	y	0.20	1	4.0	1	2;6	n	0.44	2	2.5	2	3;2	n	0.40	2	3.0	2	3;3	n	0.57	2	1.5	2	2;1	n	0.57	4	3.0	4	4;2	y	0.00172810800212877	-5.5581722735449	down	ENSMUSG00000002885.15	Adgre5	chr8	protein_coding	adhesion G protein-coupled receptor E5
known_NIR_19160	chr8	94746332	94751170	-	94746332;94749517	94749403;94751170	ES	ENSMUST00000034204.11	known	0.00	0	66.0	0	55;77	n	0.00	0	79.5	0	84;75	n	0.00	0	150.5	0	129;172	n	0.00	0	69.5	0	66;73	n	0.02	1	64.5	1	67;62	n	0.02	2	99.5	2	94;105	y	0.02	2	86.5	2	87;86	y	0.03	4	117.5	4	105;130	y	0.00289581216186414	-9	down	ENSMUSG00000031754.11	Nudt21	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 21
known_NIR_19161	chr8	94746332	94751170	-	94749517	94751170	3pMXE	ENSMUST00000212911.2	known	0.00	0	77	0	77	n	0.00	0	75	0	75	n	0.00	0	172	0	172	n	0.00	0	73	0	73	n	0.02	1	62	1	62	n	0.02	2	105	2	105	y	0.02	2	86	2	86	y	0.03	4	130	4	130	y	0.00289581216186414	-9	down	ENSMUSG00000031754.11	Nudt21	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 21
known_NIR_19234	chr9	101071624	101075830	-	101071624	101088330	A5SS	ENSMUST00000075941.12	known	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.08	1	12	1	12	n	0.21	3	11	3	11	y	0.0109452846125733	-3.68309888426911	down	ENSMUSG00000043154.16	Ppp2r3a	chr9	protein_coding	protein phosphatase 2, regulatory subunit B'', alpha
known_NIR_19429	chr9	107955096	107956889	-	107955096	107956468	5pMXE	ENSMUST00000178267.8	known	0.43	9	12	9	12	y	0.36	5	9	5	9	y	0.38	8	13	8	13	y	0.26	9	25	9	25	y	0.56	14	11	14	11	y	0.40	12	18	12	18	y	0.67	14	7	14	7	y	0.49	17	18	17	18	y	0.0499932423968981	-2.56495533186154	down	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19662	chr9	121524808	121534280	-	121524808	121533990	5pMXE	ENSMUST00000111560.10	known	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.29	2	5	2	5	n	0.12	1	7	1	7	n	0.44	4	5	4	5	n	0.56	5	4	5	4	n	0.75	3	1	3	1	n	0.50	3	3	3	3	n	0.00315027550004407	-4.78887599895146	down	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
known_NIR_19677	chr9	121681675	121686578	-	121685938	121686578	A3SS&ES	ENSMUST00000213124.2	known	0.98	402	8	402	8	y	0.99	281	2	281	2	y	0.98	391	10	391	10	y	0.98	381	7	381	7	y	1.00	332	0	332	0	n	0.99	460	3	460	3	y	0.99	407	4	407	4	y	1.00	374	1	374	1	n	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19744	chr9	124074380	124075190	-	124067348	124075190	A3SS	ENSMUST00000186041.2	known	0.90	9	1	9	1	n	0.83	5	1	5	1	n	0.67	4	2	4	2	n	0.85	11	2	11	2	y	1.00	6	0	6	0	n	0.91	10	1	10	1	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	0.0369027421198789	-3.02298884193467	down	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19745	chr9	124196747	124197153	+	124196069	124197153	A5SS	ENSMUST00000239563.2	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.56	5	4	5	4	n	0.59	10	7	10	7	y	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.00179900555668323	-7.56405939210691	down	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
known_NIR_19833	chr9	21588973;21589347	21589249;21589612	+	21588973	21589612	cassetteExon	ENSMUST00000034707.15	known	0.02	1.5	66	3;0	66	n	0.00	0.0	87	0;0	87	n	0.03	2.0	73	0;4	73	n	0.03	2.5	70	4;1	70	n	0.09	3.5	35	4;3	35	y	0.05	4.5	78	6;3	78	y	0.04	3.0	67	3;3	67	y	0.05	4.0	71	6;2	71	y	0.0349960182933897	-2.85175912736015	down	ENSMUSG00000032187.17	Smarca4	chr9	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
known_NIR_20066	chr9	47730115	47759465	+	47730115;47740707	47740675;47759465	ES	ENSMUST00000085909.9	known	0.85	14	2.5	14	2;3	y	0.96	11	0.5	11	1;0	n	0.90	9	1.0	9	1;1	n	0.88	14	2.0	14	2;2	y	0.98	22	0.5	22	0;1	n	0.97	19	0.5	19	0;1	n	0.98	22	0.5	22	0;1	n	0.95	19	1.0	19	1;1	n	0.0471035567794056	-2.98583227028742	down	ENSMUSG00000032076.21	Cadm1	chr9	protein_coding	cell adhesion molecule 1
known_NIR_20257	chr9	62252169	62279002	+	62248836	62279002	A5SS	ENSMUST00000085519.13	known	0.02	4	185	4	185	y	0.01	2	199	2	199	y	0.00	0	140	0	140	n	0.02	4	208	4	208	y	0.07	14	177	14	177	y	0.05	11	227	11	227	y	0.05	12	211	12	211	y	0.02	4	247	4	247	y	0.0342249049491965	-3.07958941544842	down	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20258	chr9	62252169	62279002	+	62249533	62279002	A5SS	ENSMUST00000135395.8	known	0.20	4	16	4	16	y	0.12	2	14	2	14	y	0.00	0	9	0	9	n	0.18	4	18	4	18	y	0.54	14	12	14	12	y	0.42	11	15	11	15	y	0.57	12	9	12	9	y	0.18	4	18	4	18	y	0.0333134197848123	-3.04312250170853	down	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20259	chr9	62252169	62279002	+	62249785	62279002	A5SS	ENSMUST00000156461.2	known	0.31	4	9	4	9	y	0.33	2	4	2	4	n	0.00	0	10	0	10	n	0.33	4	8	4	8	y	0.78	14	4	14	4	y	0.55	11	9	11	9	y	0.67	12	6	12	6	y	0.40	4	6	4	6	y	0.0208262722521798	-3.11090170495457	down	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20379	chr9	74860341	74860996	+	74860290	74860996	A5SS	ENSMUST00000216809.2	known	0.34	13	25	13	25	y	0.46	13	15	13	15	y	0.46	6	7	6	7	y	0.60	24	16	24	16	y	0.78	25	7	25	7	y	0.63	19	11	19	11	y	0.59	17	12	17	12	y	0.68	17	8	17	8	y	0.0242646116483749	-3.05313390099013	down	ENSMUSG00000034858.17	Fam214a	chr9	protein_coding	family with sequence similarity 214, member A
known_NIR_20648	chrX	149335340	149336000	+	149335340	149335955	A3SS	ENSMUST00000066337.13	known	0.09	13	133	13	133	y	0.10	12	114	12	114	y	0.12	9	69	9	69	y	0.08	20	246	20	246	y	0.12	19	145	19	145	y	0.12	33	241	33	241	y	0.15	30	165	30	165	y	0.13	37	255	37	255	y	0.0273107830256495	-2.93141950921103	down	ENSMUSG00000025270.14	Alas2	chrX	protein_coding	aminolevulinic acid synthase 2, erythroid
known_NIR_20715	chrX	168102586	168102972	-	168102586	168103111	A5SS	ENSMUST00000033717.9	known	0.41	7	10	7	10	y	0.33	2	4	2	4	n	0.59	22	15	22	15	y	0.39	7	11	7	11	y	0.62	8	5	8	5	y	0.69	11	5	11	5	y	0.69	9	4	9	4	y	0.47	7	8	7	8	y	0.0495429270816562	-2.45714612591085	down	ENSMUSG00000031352.11	Hccs	chrX	protein_coding	holocytochrome c synthetase
known_NIR_20735	chrX	20564767	20565469	+	20564767	20564848	A3SS	ENSMUST00000115364.8	known	0.04	3	67	3	67	y	0.00	0	70	0	70	n	0.00	0	102	0	102	n	0.00	0	65	0	65	n	0.05	3	57	3	57	y	0.07	6	74	6	74	y	0.05	4	76	4	76	y	0.06	4	59	4	59	y	0.0109042589936611	-4.28438235961612	down	ENSMUSG00000031065.15	Cdk16	chrX	protein_coding	cyclin-dependent kinase 16
known_NIR_20913	chrX	73332320;73332625	73332590;73332711	+	73332320	73332711	cassetteExon	ENSMUST00000069722.13	known	0.10	2.0	19	0;4	19	n	0.11	2.5	20	0;5	20	n	0.05	1.0	21	0;2	21	n	0.19	5.0	22	2;8	22	y	0.29	8.0	20	1;15	20	n	0.19	7.0	30	0;14	30	n	0.30	9.0	21	0;18	21	n	0.32	10.0	21	1;19	21	n	0.00742520715354129	-3.963119945523	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_21036	chrX	98511179	98511729	-	98511188	98511729	A3SS	ENSMUST00000113790.8	known	0.00	0	31	0	31	n	0.03	1	38	1	38	n	0.00	0	30	0	30	n	0.06	4	58	4	58	y	0.08	3	35	3	35	y	0.09	4	41	4	41	y	0.17	8	38	8	38	y	0.15	8	45	8	45	y	0.0120766774177492	-3.79094414163938	down	ENSMUSG00000034403.17	Pja1	chrX	protein_coding	praja ring finger ubiquitin ligase 1
novel_NIR_284	chr1	140016578	140026702	-	140016578	140028546	A5SS	ENSMUST00000192919.6	novel	0.19	10	42	10	42	n	0.30	18	43	18	43	n	0.26	14	40	14	40	y	0.13	4	26	4	26	n	0.40	18	27	18	27	n	0.38	21	35	21	35	y	0.42	17	23	17	23	y	0.29	14	35	14	35	n	0.0198945381448836	-3.22245031715178	down	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_825	chr1	39604413	39615789	-	39604413	39616413	A5SS	ENSMUST00000195136.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.0156470487758018	-4.97014925373134	down	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_1049	chr1	7190823	7217861	+	7159440	7217861	A5SS	ENSMUST00000182114.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.91	10	1	10	1	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.0281859153369248	-5.82973928858059	down	ENSMUSG00000051285.18	Pcmtd1	chr1	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
novel_NIR_1649	chr10	128807196	128819588	+	128807196	128813472	3pMXE	ENSMUST00000181142.2	novel	0.52	28	26	28	26	y	0.46	26	30	26	30	y	0.44	4	5	4	5	y	0.49	41	43	41	43	y	0.60	50	33	50	33	y	0.53	91	81	91	81	y	0.53	65	58	65	58	y	0.51	90	88	90	88	y	0.0494195726462333	-2.4641136920656	down	ENSMUSG00000097691.2	9030616G12Rik	chr10	lncRNA	RIKEN cDNA 9030616G12 gene
novel_NIR_1773	chr10	4636956	4662313	+	4562155	4662313	A5SS	ENSMUST00000067086.14	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	0.000318343440071157	-19	down	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1774	chr10	4636956	4662313	+	4619332	4662313	A5SS	ENSMUST00000149195.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.50	4	4	4	4	y	0.33	1	2	1	2	n	0.50	4	4	4	4	y	0.00347103872683626	-8.45648335460099	down	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1810	chr10	59186385	59187905	+	59186422	59187905	A5SS	ENSMUST00000009789.15	novel	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.15	9	51	9	51	y	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.10	2	19	2	19	n	0.17	2	10	2	10	y	0.18	2	9	2	9	y	0.0408088906765185	-2.84493880689696	down	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
novel_NIR_2031	chr10	79963934	79965744	+	79963934	79964225	A3SS&ES	ENSMUST00000144883.8	novel	0.46	6	7	6	7	y	0.47	8	9	8	9	y	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.78	7	2	7	2	y	0.73	8	3	8	3	y	0.64	7	4	7	4	y	0.64	9	5	9	5	y	0.0416101461143699	-3.1150912710075	down	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2541	chr11	113583328	113590032	+	113583328	113585338	3pMXE	ENSMUST00000042227.15	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.08	1	12	1	12	n	0.20	2	8	2	8	y	0.0310528188122684	-3.84460945972542	down	ENSMUSG00000041623.18	D11Wsu47e	chr11	protein_coding	DNA segment, Chr 11, Wayne State University 47, expressed
novel_NIR_2806	chr11	121189681	121197594	+	121189681	121190410	3pMXE	ENSMUST00000151492.2	novel	0.24	4	13	4	13	y	0.27	3	8	3	8	y	0.24	12	37	12	37	y	0.19	4	17	4	17	y	0.31	4	9	4	9	y	0.37	16	27	16	27	y	0.29	4	10	4	10	y	0.32	6	13	6	13	y	0.0103121577859756	-3.68251077511745	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2807	chr11	121189681	121197594	+	121189681;121190619	121190410;121197594	ES	ENSMUST00000106113.2	novel	0.23	4	13.5	4	13;14	y	0.29	3	7.5	3	8;7	y	0.30	12	27.5	12	37;18	y	0.22	4	14.0	4	17;11	y	0.33	4	8.0	4	9;7	y	0.42	16	22.0	16	27;17	y	0.30	4	9.5	4	10;9	y	0.33	6	12.0	6	13;11	y	0.044313828336488	-2.57260968875712	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2966	chr11	4086797	4087174	+	4086797	4087309	A3SS	ENSMUST00000145705.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.0387968213685622	-4.92800147686227	down	ENSMUSG00000003581.15	Rnf215	chr11	protein_coding	ring finger protein 215
novel_NIR_3077	chr11	51158158	51161364	+	51158158	51158992	A3SS&ES	ENSMUST00000130641.8	novel	0.35	7	13	7	13	y	0.12	1	7	1	7	n	0.25	9	27	9	27	y	0.30	3	7	3	7	y	0.50	8	8	8	8	y	0.59	10	7	10	7	y	0.40	6	9	6	9	y	0.42	8	11	8	11	y	0.0151188066588898	-3.38735399228495	down	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3079	chr11	51158158	51161364	+	51158158;51159058	51158992;51161364	ES	ENSMUST00000126131.8	novel	0.45	7	8.5	7	13;4	y	0.18	1	4.5	1	7;2	n	0.34	9	17.5	9	27;8	y	0.38	3	5.0	3	7;3	y	0.64	8	4.5	8	8;1	y	0.69	10	4.5	10	7;2	y	0.57	6	4.5	6	9;0	y	0.53	8	7.0	8	11;3	y	0.0101651263175838	-4.004580328994	down	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3756	chr11	94174411	94175580	+	94174411	94175482	A3SS	ENSMUST00000208510.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000094091.4	Gm21885	chr11	protein_coding	predicted gene, 21885
novel_NIR_3850	chr11	98933490	98939052	+	98934450	98939052	5pMXE	ENSMUST00000130530.8	novel	0.02	1	63	1	63	n	0.11	6	49	6	49	n	0.00	0	51	0	51	n	0.07	5	64	5	64	n	0.21	11	42	11	42	y	0.21	14	54	14	54	y	0.12	7	53	7	53	n	0.12	11	83	11	83	n	0.0186572892378016	-3.19979838074516	down	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_4103	chr12	111696546	111700103	+	111696546	111717621	A3SS	ENSMUST00000163220.10	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.0377495513506237	-5	down	ENSMUSG00000037787.15	Coa8	chr12	protein_coding	cytochrome c oxidase assembly factor 8
novel_NIR_4128	chr12	111929787	111933017	-	111929787	111933128	A5SS	ENSMUST00000223191.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.62	5	3	5	3	y	0.33	1	2	1	2	n	0.88	7	1	7	1	y	0.0235093514635159	-3.22982803375902	down	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
novel_NIR_4153	chr12	112564071	112566428	+	112555969	112566428	A5SS	ENSMUST00000220786.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.0394597897898668	-3.04308952761586	down	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4837	chr13	120237525	120237621	-	120237525	120237628	A5SS	ENSMUST00000178271.3	novel	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.09	4	39	4	39	n	0.13	2	13	2	13	n	0.12	1	7	1	7	n	0.30	7	16	7	16	y	0.22	2	7	2	7	y	0.17	2	10	2	10	y	0.0273128745613837	-2.92212917590699	down	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4912	chr13	24197443	24208306	-	24197443;24206619	24206479;24208306	ES	ENSMUST00000072889.12	novel	0.04	1	27.0	1	15;39	n	0.04	1	27.5	1	25;30	n	0.00	0	26.5	0	21;32	n	0.00	0	31.0	0	29;33	n	0.10	4	35.0	4	32;38	n	0.11	4	32.5	4	34;31	n	0.09	4	43.0	4	32;54	n	0.09	2	20.5	2	21;20	n	0.00343705405321158	-6.2	down	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_5172	chr13	55359656	55361017	+	55359920	55361017	5pMXE	ENSMUST00000225194.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.044930247819585	-4.55721536911849	down	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5173	chr13	55359656	55361017	+	55360430	55361017	5pMXE	ENSMUST00000225169.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.0444669140940908	-4.58257569495584	down	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5308	chr13	67078287	67078389	-	67078287	67079670	A5SS	ENSMUST00000172597.8	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00788678095453256	-6.35399419782315	down	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
novel_NIR_5318	chr13	67321239	67324512	+	67321372	67324512	5pMXE	ENSMUST00000225334.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000058900.6	Rsl1	chr13	protein_coding	regulator of sex limited protein 1
novel_NIR_5432	chr13	92985583;92986031	92985933;92986798	+	92985583	92986798	cassetteExon	ENSMUST00000076169.4	novel	0.33	1.0	2	1;1	2	n	0.00	0.0	4	0;0	4	n	0.25	1.0	3	2;0	3	n	0.27	1.5	4	1;2	4	n	0.54	3.5	3	3;4	3	y	0.30	3.0	7	2;4	7	y	0.60	1.5	1	0;3	1	n	0.44	4.0	5	3;5	5	y	0.0396070929389564	-2.62724328658816	down	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5492	chr14	103384468	103385944	-	103384465	103385944	A3SS	ENSMUST00000161008.8	novel	0.67	8	4	8	4	y	0.60	3	2	3	2	y	0.20	1	4	1	4	n	0.68	13	6	13	6	y	1.00	3	0	3	0	y	0.93	13	1	13	1	y	1.00	11	0	11	0	y	0.77	20	6	20	6	y	0.0338916170904715	-3.07166656539058	down	ENSMUSG00000033004.17	Mycbp2	chr14	protein_coding	MYC binding protein 2, E3 ubiquitin protein ligase
novel_NIR_5569	chr14	14546318	14547060	-	14546318	14547027	A5SS	ENSMUST00000052678.9	novel	0.79	27	7	27	7	y	0.77	10	3	10	3	y	0.85	40	7	40	7	y	0.82	31	7	31	7	y	0.90	18	2	18	2	y	0.87	40	6	40	6	y	0.84	27	5	27	5	y	0.90	53	6	53	6	y	0.0223923700859993	-3.0920827300957	down	ENSMUSG00000025278.10	Flnb	chr14	protein_coding	filamin, beta
novel_NIR_5924	chr14	51339248	51342264	+	51328710	51342264	A5SS	ENSMUST00000022428.13	novel	0.09	83	813	83	813	n	0.09	85	867	85	867	n	0.03	32	976	32	976	n	0.10	98	859	98	859	n	0.12	90	681	90	681	n	0.13	146	952	146	952	n	0.18	119	535	119	535	y	0.11	105	829	105	829	n	0.0419789532840427	-2.57685222005779	down	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
novel_NIR_5940	chr14	52149003	52149753	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.37	22	37	22	37	y	0.31	11	25	11	25	y	0.00	0	3	0	3	n	0.20	15	61	15	61	y	0.52	33	31	33	31	y	0.51	41	39	41	39	y	0.44	28	36	28	36	y	0.55	50	41	50	41	y	0.0346230493976981	-3.36851822281878	down	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_6011	chr14	55800956	55801531	+	55800956	55801510	A3SS	ENSMUST00000117701.8	novel	0.83	5	1	5	1	y	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.0283794443488709	-2.87128208118174	down	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6072	chr14	56912232	56913979	+	56912196	56913979	A5SS	ENSMUST00000116468.2	novel	0.10	3	28	3	28	n	0.10	2	19	2	19	n	0.20	9	35	9	35	y	0.17	5	24	5	24	y	0.43	9	12	9	12	y	0.21	7	26	7	26	y	0.24	6	19	6	19	y	0.36	12	21	12	21	y	0.0388294605660561	-2.92041361901754	down	ENSMUSG00000079184.11	Mphosph8	chr14	protein_coding	M-phase phosphoprotein 8
novel_NIR_6095	chr14	58036054	58038017	+	58036054	58042215	A3SS	ENSMUST00000111269.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.0489939621996472	-2.65657670976001	down	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6165	chr14	61841255	61862669	-	61841255	61869886	A5SS	ENSMUST00000182768.8	novel	0.05	1	19	1	19	n	0.04	1	23	1	23	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.12	3	23	3	23	n	0.17	2	10	2	10	y	0.12	3	23	3	23	n	0.0290394227512903	-3.06974150107718	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6166	chr14	61841255	61862669	-	61841255	61872974	A5SS	ENSMUST00000183054.8	novel	0.25	1	3	1	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.43	3	4	3	4	y	0.00482184455642774	-4.92951879203187	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6620	chr15	3487490	3611545	-	3487490	3611740	A5SS	ENSMUST00000161770.2	novel	0.08	4	48	4	48	n	0.14	5	30	5	30	n	0.09	2	20	2	20	n	0.08	5	61	5	61	n	0.28	16	41	16	41	y	0.22	15	54	15	54	y	0.18	8	36	8	36	y	0.17	10	48	10	48	y	0.0113252112454549	-3.99371365319531	down	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6623	chr15	3487490	3611627	-	3487490	3611740	A5SS	ENSMUST00000161770.2	novel	0.04	2	48	2	48	n	0.06	2	30	2	30	n	0.00	0	20	0	20	n	0.00	0	61	0	61	n	0.20	10	41	10	41	y	0.11	7	54	7	54	n	0.08	3	36	3	36	n	0.08	4	48	4	48	n	0.0385791726649227	-2.88044609339763	down	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6689	chr15	54783094	54815939	-	54783094	54783325	5pMXE	ENSMUST00000041591.16	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.27	3	8	3	8	y	0.50	2	2	2	2	y	0.29	2	5	2	5	y	0.0407141613526653	-4.8033184969521	down	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
novel_NIR_6717	chr15	58815979	58817166	-	58815979	58817211	A5SS	ENSMUST00000080371.8	novel	0.11	18	150	18	150	n	0.10	13	119	13	119	n	0.15	31	172	31	172	y	0.14	29	175	29	175	n	0.18	24	112	24	112	y	0.20	43	169	43	169	y	0.13	18	121	18	121	n	0.18	47	210	47	210	y	0.0492784989461727	-2.48768394869031	down	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6768	chr15	7183766	7183868	+	7170064	7183868	A5SS	ENSMUST00000226934.2	novel	0.00	0	49	0	49	n	0.08	2	22	2	22	n	0.00	0	3	0	3	n	0.03	4	137	4	137	n	0.09	11	106	11	106	n	0.08	13	147	13	147	n	0.12	13	91	13	91	n	0.13	14	96	14	96	n	0.0174478991232797	-3.47314864442571	down	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6867	chr15	76546211	76546311	+	76546211	76546301	A3SS	ENSMUST00000230451.2	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.19	3	13	3	13	y	0.14	3	18	3	18	n	0.16	3	16	3	16	y	0.00871072609855662	-6.1345908285072	down	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
novel_NIR_6906	chr15	77613348	77617012	+	77613348	77618665	A3SS	ENSMUST00000230979.2	novel	0.10	7	63	7	63	n	0.05	2	39	2	39	n	0.09	1	10	1	10	n	0.09	9	92	9	92	n	0.16	12	61	12	61	y	0.17	16	76	16	76	y	0.20	22	86	22	86	y	0.21	23	85	23	85	y	0.000759243993011483	-6.30148089081629	down	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
novel_NIR_7744	chr16	45647589	45680685	-	45647589	45664571	5pMXE	ENSMUST00000125433.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7848	chr16	64673388	64675917	+	64673388	64675914	A3SS	ENSMUST00000067744.8	novel	0.15	12	68	12	68	y	0.15	12	67	12	67	y	0.16	30	152	30	152	y	0.12	10	71	10	71	n	0.26	20	56	20	56	y	0.21	23	88	23	88	y	0.20	17	66	17	66	y	0.30	36	85	36	85	y	0.0186531767456442	-3.93291197589896	down	ENSMUSG00000054604.8	Cggbp1	chr16	protein_coding	CGG triplet repeat binding protein 1
novel_NIR_7900	chr16	84630762	84630882	-	84628395	84630882	A3SS	ENSMUST00000114193.8	novel	0.00	0	7	0	7	n	0.18	3	14	3	14	y	-	-	-	-	-	-	0.10	1	9	1	9	n	0.36	4	7	4	7	y	0.36	8	14	8	14	y	0.29	5	12	5	12	y	0.38	5	8	5	8	n	0.0271148410835766	-4.56445686991971	down	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7985	chr16	93393223	93394249	-	93393223	93396100	A5SS	ENSMUST00000123756.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.67	4	2	4	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.0289645935449529	-5.7473696648568	down	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_8085	chr17	15159842	15163821	-	15159842	15163359	5pMXE	ENSMUST00000228869.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	6	2	6	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0198039411803931	-7	down	ENSMUSG00000046991.13	Wdr27	chr17	protein_coding	WD repeat domain 27
novel_NIR_8132	chr17	22122816	22123523	-	22122816	22123511	A5SS	ENSMUST00000186313.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.0149345014131363	-8.09090909090909	down	ENSMUSG00000078546.9	Zfp995	chr17	protein_coding	zinc finger protein 995
novel_NIR_8225	chr17	25054149	25058401	+	25054149;25055496	25055410;25058401	ES	ENSMUST00000234372.2	novel	0.15	3	17.5	3	13;22	y	0.18	4	18.5	4	19;18	y	0.30	5	11.5	5	13;10	y	0.29	6	14.5	6	17;12	y	0.49	11	11.5	11	8;15	y	0.49	24	25.0	24	28;22	y	0.47	20	22.5	20	17;28	y	0.36	12	21.0	12	20;22	y	0.00441342718385527	-4.52023253269266	down	ENSMUSG00000024155.9	Meiob	chr17	protein_coding	meiosis specific with OB domains
novel_NIR_8587	chr17	35342214;35344291	35344209;35345134	-	35342214	35345134	cassetteExon	ENSMUST00000173576.2	novel	0.08	0.5	6	1;0	6	n	0.20	1.5	6	3;0	6	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.33	1.5	3	2;1	3	n	0.18	2.0	9	3;1	9	n	0.27	1.5	4	2;1	4	n	0.25	2.0	6	4;0	6	n	0.0199758189215626	-3.31997104014189	down	ENSMUSG00000092241.2	Gm20522	chr17	lncRNA	predicted gene 20522
novel_NIR_9016	chr17	86229369	86235937	-	86223781	86235937	A3SS	ENSMUST00000234707.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	y	0.38	3	5	3	5	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00152540481990736	-11.2009298494852	down	ENSMUSG00000117501.2	Gm30117	chr17	lncRNA	predicted gene, 30117
novel_NIR_9528	chr18	76033832;76096274	76096195;76144700	+	76033832	76144700	cassetteExon	ENSMUST00000058997.15	novel	0.14	0.5	3	1;0	3	n	0.00	0.0	3	0;0	3	n	0.11	0.5	4	1;0	4	n	-	-	-	-	-	-	0.33	1.5	3	2;1	3	n	0.67	2.0	1	2;2	1	y	0.33	1.5	3	0;3	3	n	1.00	2.5	0	3;2	0	y	0.0487653877168959	-3.0045924508488	down	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9529	chr18	76096274	76144700	+	76033832	76144700	A5SS	ENSMUST00000058997.15	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.50	3	3	3	3	y	1.00	2	0	2	0	n	0.0310720316650633	-3.84369167483826	down	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_10289	chr19	8320335	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	novel	0.19	3	13	3	13	y	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.32	6	13	6	13	y	0.23	7	23	7	23	y	0.53	9	8	9	8	y	0.33	10	20	10	20	n	0.0486091848785348	-2.4720028028593	down	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10349	chr2	104600525;104601020	104600844;104606517	-	104600525	104606517	cassetteExon	ENSMUST00000117237.2	novel	0.00	0.0	8	0;0	8	n	0.12	3.0	22	1;5	22	n	0.16	3.5	18	5;2	18	y	0.03	0.5	16	0;1	16	n	0.22	2.0	7	0;4	7	n	0.33	5.5	11	0;11	11	n	0.36	4.0	7	0;8	7	n	0.22	5.0	18	1;9	18	n	0.00788192424523857	-3.91216149810478	down	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10350	chr2	104601020	104606517	-	104600525	104606517	A3SS	ENSMUST00000117237.2	novel	0.00	0	8	0	8	n	0.19	5	22	5	22	n	0.10	2	18	2	18	n	0.06	1	16	1	16	n	0.36	4	7	4	7	y	0.50	11	11	11	11	y	0.53	8	7	8	7	y	0.33	9	18	9	18	n	0.00199158690046833	-5.3667061151934	down	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10354	chr2	106799903	106804647	-	106799903	106804617	A5SS	ENSMUST00000028536.13	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.31	5	11	5	11	y	0.33	3	6	3	6	y	0.42	8	11	8	11	y	0.50	4	4	4	4	y	0.42	8	11	8	11	y	0.0148952728488962	-4.00346470398435	down	ENSMUSG00000027122.16	Arl14ep	chr2	protein_coding	ADP-ribosylation factor-like 14 effector protein
novel_NIR_10399	chr2	118751313	118752086	+	118751313	118752077	A3SS	ENSMUST00000036578.7	novel	0.23	3	10	3	10	y	0.19	4	17	4	17	y	0.23	6	20	6	20	y	0.32	6	13	6	13	y	0.28	5	13	5	13	y	0.50	8	8	8	8	y	0.45	5	6	5	6	y	0.50	12	12	12	12	y	0.0268373608491137	-3.22118734385189	down	ENSMUSG00000040007.9	Bahd1	chr2	protein_coding	bromo adjacent homology domain containing 1
novel_NIR_11044	chr2	177193590;177194987	177194886;177198702	+	177193590	177198702	cassetteExon	ENSMUST00000142549.2	novel	0.17	11.0	54	0;22	54	n	0.10	6.5	59	0;13	59	n	0.15	5.5	30	0;11	30	n	0.24	16.0	51	0;32	51	n	0.31	15.5	35	0;31	35	n	0.28	22.0	57	15;29	57	y	0.29	29.5	72	15;44	72	y	0.20	11.5	46	0;23	46	n	0.0330421705450228	-2.78151794983659	down	ENSMUSG00000094786.2	Gm14403	chr2	protein_coding	predicted gene 14403
novel_NIR_11203	chr2	24972162	24972925	+	24972162	24972978	A3SS	ENSMUST00000150625.4	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.13	2	13	2	13	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	0.0224774757540882	-4.34714133601331	down	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_12175	chr3	131136109	131195851	-	131136109	131196169	A5SS	ENSMUST00000197057.2	novel	0.54	7	6	7	6	y	0.71	5	2	5	2	y	0.64	16	9	16	9	y	0.73	16	6	16	6	y	0.85	17	3	17	3	y	0.79	31	8	31	8	y	0.83	20	4	20	4	y	0.73	24	9	24	9	y	0.0348040815557981	-2.8761312813467	down	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12559	chr3	81882736	81897299	-	81882736	81883080	5pMXE	ENSMUST00000193879.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.21	3	11	3	11	y	0.12	2	14	2	14	n	0.25	3	9	3	9	y	0.0413507902677774	-2.70079244056807	down	ENSMUSG00000028011.17	Tdo2	chr3	protein_coding	tryptophan 2,3-dioxygenase
novel_NIR_12721	chr3	89303169	89305266	+	89301700	89305266	A5SS	ENSMUST00000126926.2	novel	0.19	5	21	5	21	y	0.25	6	18	6	18	y	0.10	1	9	1	9	n	0.17	4	19	4	19	y	0.45	15	18	15	18	y	0.46	11	13	11	13	y	0.47	15	17	15	17	y	0.52	14	13	14	13	y	0.000634136462593306	-8.59554991032392	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12890	chr3	98617673	98620744	-	98619633	98620744	A3SS	ENSMUST00000107022.8	novel	0.00	0	25	0	25	n	0.17	4	19	4	19	y	0.00	0	2	0	2	n	0.03	1	28	1	28	n	0.21	11	42	11	42	y	0.28	16	41	16	41	y	0.22	12	42	12	42	y	0.37	34	59	34	59	y	0.00713029859094098	-4.01663208837122	down	ENSMUSG00000063730.14	Hsd3b2	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
novel_NIR_13388	chr4	135961725	135961859	+	135961725	135961895	A3SS	ENSMUST00000047526.8	novel	0.11	2	16	2	16	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	20	0	20	n	0.08	1	11	1	11	n	0.21	7	26	7	26	y	0.16	3	16	3	16	y	0.12	3	21	3	21	n	0.025923195269833	-2.94083344689865	down	ENSMUSG00000036995.8	Asap3	chr4	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
novel_NIR_13414	chr4	137832747	137853121	+	137832747	137842464	3pMXE	ENSMUST00000058133.10	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.0377495513506237	-5	down	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13700	chr4	24902000	24903132	+	24901781	24903132	A5SS	ENSMUST00000151249.2	novel	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.08	1	11	1	11	n	0.19	3	13	3	13	y	0.29	6	15	6	15	y	0.31	5	11	5	11	y	0.15	2	11	2	11	y	0.25	1	3	1	3	n	0.0204232541239284	-3.18194319684001	down	ENSMUSG00000028261.14	Ndufaf4	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 4
novel_NIR_14032	chr4	86829944	86835631	+	86829990	86835631	A5SS	ENSMUST00000045224.14	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.06	1	15	1	15	n	0.40	2	3	2	3	y	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.29	2	5	2	5	y	0.0444165630687812	-3.2989562784692	down	ENSMUSG00000038007.15	Acer2	chr4	protein_coding	alkaline ceramidase 2
novel_NIR_14709	chr5	138092401	138094046	+	138092401	138098852	A3SS	ENSMUST00000066617.12	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.67	2	1	2	1	y	0.0033627784416592	-6.23917748105777	down	ENSMUSG00000029729.13	Zkscan1	chr5	protein_coding	zinc finger with KRAB and SCAN domains 1
novel_NIR_14840	chr5	146022660	146022739	+	146022660	146024181	A3SS	ENSMUST00000199212.5	novel	0.11	5	39	5	39	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.05	2	36	2	36	n	0.26	23	67	23	67	n	0.15	10	55	10	55	n	0.43	48	63	48	63	n	0.23	20	68	20	68	n	0.0229501062524863	-3.52882864119914	down	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_15415	chr5	92722572	92735375	+	92722572;92733270	92733115;92735375	ES	ENSMUST00000082382.8	novel	0.05	2	37.5	2	11;64	n	0.04	2	50.0	2	25;75	n	0.00	0	8.5	0	3;14	n	0.03	2	60.5	2	31;90	n	0.15	6	34.0	6	16;52	y	0.09	5	51.5	5	21;82	n	0.16	8	42.0	8	29;55	y	0.06	2	34.0	2	22;46	n	0.0300666412972527	-3.23199367767484	down	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15582	chr6	119377844	119394381	-	119377844;119378983	119378880;119394381	ES	ENSMUST00000189710.2	novel	-	-	-	-	-	-	0.00	0	2.0	0	4;0	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.57	2	1.5	2	3;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	0.0268711295957412	-5.97674418604651	down	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15851	chr6	138127860	138130559	+	138127860	138130494	A3SS	ENSMUST00000120939.8	novel	0.00	0	31	0	31	n	0.13	4	27	4	27	n	0.00	0	41	0	41	n	0.03	1	33	1	33	n	0.10	3	28	3	28	n	0.26	18	50	18	50	y	0.18	7	31	7	31	y	0.38	22	36	22	36	y	0.0415525371044139	-2.82712219866762	down	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_16054	chr6	34853706	34854611	-	34853706	34854510	A5SS	ENSMUST00000055097.11	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
novel_NIR_16080	chr6	38531998	38534235	+	38531998	38547445	A3SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.80	4	1	4	1	y	0.56	5	4	5	4	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	0.0472546763090654	-2.51965602881581	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16088	chr6	38531998;38536239	38536139;38547445	+	38531998	38547445	cassetteExon	ENSMUST00000163047.8	novel	0.00	0.0	4	0;0	4	n	0.40	2.0	3	0;4	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.75	3.0	1	0;6	1	n	0.50	4.0	4	1;7	4	n	-	-	-	-	-	-	0.67	6.0	3	5;7	3	y	0.0075445753845509	-4.34674228204556	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16093	chr6	38536239	38547445	+	38531998	38547445	A5SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.86	6	1	6	1	y	0.64	7	4	7	4	n	-	-	-	-	-	-	0.70	7	3	7	3	n	0.0185701807707271	-3.76568718978141	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16137	chr6	40620154	40621754	+	40620036	40621754	A5SS	ENSMUST00000201148.4	novel	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.23	5	17	5	17	y	0.26	5	14	5	14	y	0.58	7	5	7	5	y	0.33	6	12	6	12	y	0.50	4	4	4	4	y	0.42	13	18	13	18	y	0.011777809787875	-3.58237952409306	down	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16197	chr6	48571910	48573230	+	48571910	48573227	A3SS	ENSMUST00000009420.15	novel	0.38	11	18	11	18	y	0.36	14	25	14	25	y	0.36	12	21	12	21	y	0.39	22	34	22	34	y	0.44	22	28	22	28	y	0.46	25	29	25	29	y	0.47	23	26	23	26	y	0.40	20	30	20	30	y	0.0129313057541537	-4.06981329813668	down	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
novel_NIR_16853	chr7	119459138	119494294	-	119459138	119494781	A5SS	ENSMUST00000059851.14	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.04	1	23	1	23	n	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.17	2	10	2	10	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.0230406628339271	-3.14487249098634	down	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16871	chr7	120634845	120647061	+	120635024	120647061	A5SS	ENSMUST00000207332.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.0453953524225422	-3.18841263071994	down	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16947	chr7	126578168	126578473	+	126578168	126578477	A3SS	ENSMUST00000206346.2	novel	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.80	4	1	4	1	y	0.40	2	3	2	3	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.0215972999977841	-4.41260042050518	down	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
novel_NIR_17174	chr7	140486574;140486734	140486712;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.38	64.0	104	106;22	104	y	0.35	51.0	94	89;13	94	y	0.31	20.5	45	30;11	45	y	0.30	46.5	107	88;5	107	y	0.39	72.5	113	129;16	113	y	0.38	92.5	152	173;12	152	y	0.41	78.5	112	155;2	112	y	0.43	74.0	98	134;14	98	y	0.0265471986418339	-3.13164092575959	down	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17178	chr7	140486574;140486864	140486712;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.36	57.5	104	106;9	104	y	0.33	46.0	94	89;3	94	y	0.31	20.5	45	30;11	45	y	0.32	49.5	107	88;11	107	y	0.38	69.5	113	129;10	113	y	0.37	90.5	152	173;8	152	y	0.42	80.5	112	155;6	112	y	0.42	70.0	98	134;6	98	y	0.00796996508742536	-3.96658706568257	down	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17416	chr7	23834740	23835408	+	23834740	23836471	A3SS	ENSMUST00000205680.2	novel	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.33	2	4	2	4	y	0.56	5	4	5	4	y	0.38	3	5	3	5	y	1.00	4	0	4	0	y	0.0456633002499813	-3.17480504378692	down	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17453	chr7	25320517;25321472	25321398;25321769	+	25320517;25320937	25320849;25321769	MXE	ENSMUST00000126925.8	novel	0.49	9.0	9.5	3;15	15;4	y	0.45	4.5	5.5	0;9	7;4	n	0.33	2.0	4.0	1;3	3;5	n	0.30	4.0	9.5	0;8	14;5	n	0.59	8.0	5.5	1;15	8;3	n	0.68	11.5	5.5	2;21	7;4	y	0.63	8.5	5.0	3;14	8;2	y	0.55	10.5	8.5	2;19	15;2	y	0.00959267318551187	-4.10005118036603	down	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
novel_NIR_17553	chr7	30206202	30209198	+	30206202	30207821	3pMXE	ENSMUST00000142514.8	novel	0.10	10	95	10	95	n	0.17	22	105	22	105	y	0.00	0	5	0	5	n	0.00	0	69	0	69	n	0.19	15	64	15	64	y	0.14	18	112	18	112	n	0.22	25	91	25	91	y	0.22	28	101	28	101	y	0.0492718011137166	-2.74135551509107	down	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_18127	chr7	67888942	67899215	-	67888942	67908985	A5SS	ENSMUST00000207874.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00842838636300781	-10.8235294117647	down	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18345	chr7	98002337	98010275	-	98002337	98009228	5pMXE	ENSMUST00000179780.3	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.83	10	2	10	2	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.0185652133274241	-3.55831054583729	down	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18745	chr8	129960713	129960790	-	129948431	129960790	A3SS	ENSMUST00000188757.7	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	0.0299411465278855	-3.89898951616862	down	ENSMUSG00000071302.11	2610044O15Rik8	chr8	protein_coding	RIKEN cDNA 2610044O15 gene
novel_NIR_18774	chr8	19834866	20030551	+	20016688	20030551	5pMXE	ENSMUST00000140111.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.64	7	4	7	4	y	0.30	3	7	3	7	y	0.0429302186491389	-3.32646502012398	down	ENSMUSG00000071793.13	2610005L07Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 2610005L07 gene
novel_NIR_18806	chr8	25043856	25066166	-	25043856;25048259	25048164;25066166	ES	ENSMUST00000121992.2	novel	0.07	10	126.0	10	108;144	n	0.08	5	58.0	5	53;63	n	0.06	2	31.0	2	32;30	n	0.07	14	189.0	14	147;231	n	0.20	21	83.5	21	71;96	y	0.11	17	135.0	17	119;151	n	0.13	13	85.0	13	73;97	n	0.15	17	93.5	17	70;117	y	0.0251300282702596	-3.92646307756296	down	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_19466	chr8	95208491	95209195	+	95208491;95208693	95208604;95209195	ES	ENSMUST00000211816.2	novel	0.00	0	7.0	0	8;6	n	0.00	0	7.0	0	5;9	n	0.09	1	10.0	1	12;8	n	0.00	0	6.5	0	6;7	n	0.33	4	8.0	4	6;10	y	0.36	5	9.0	5	10;8	y	0.27	2	5.5	2	7;4	y	0.06	1	14.5	1	11;18	n	0.0353806051127748	-3.26165240081831	down	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19467	chr8	95208491	95209195	+	95208693	95209195	5pMXE	ENSMUST00000183132.2	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.29	4	10	4	10	y	0.38	5	8	5	8	y	0.33	2	4	2	4	y	0.05	1	18	1	18	n	0.0419792848392817	-3.00578855313807	down	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19662	chr9	107536663	107546052	-	107545945	107546052	A3SS&ES	ENSMUST00000192990.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	8	16	8	16	y	0.0205517742787546	-6.86751706933987	down	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19810	chr9	112933909	112952050	-	112933155	112952050	A3SS	ENSMUST00000214620.2	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	1.00	2	0	2	0	n	1.00	11	0	11	0	y	0.047048566461175	-2.56533301263985	down	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19945	chr9	124201170	124201277	+	124201056	124201277	A5SS	ENSMUST00000239563.2	novel	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.02	1	42	1	42	n	0.00	0	45	0	45	n	0.05	2	35	2	35	n	0.04	2	53	2	53	n	0.12	3	23	3	23	n	0.15	6	34	6	34	y	0.0478716127824899	-3.12114931294673	down	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_21192	chrX	49666901	49669216	-	49666901	49669690	A5SS	ENSMUST00000204974.3	novel	0.69	11	5	11	5	y	0.65	17	9	17	9	y	0.50	7	7	7	7	y	0.59	10	7	10	7	y	0.83	24	5	24	5	y	0.74	26	9	26	9	y	0.71	15	6	15	6	y	0.71	17	7	17	7	y	0.0358102040504008	-2.79302614110137	down	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21193	chrX	49666901;49669297	49669216;49669458	-	49666901	49669458	cassetteExon	ENSMUST00000203933.3	novel	0.23	8.5	29	11;6	29	y	0.28	11.0	29	17;5	29	y	0.18	5.0	23	7;3	23	y	0.32	9.0	19	10;8	19	y	0.48	20.5	22	24;17	22	y	0.46	16.5	19	26;7	19	y	0.33	12.0	24	15;9	24	y	0.34	14.5	28	17;12	28	y	0.0251509557940588	-3.02275633115927	down	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21324	chrX	8065143	8065306	-	8064324	8065306	A3SS	ENSMUST00000082320.12	novel	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.17	3	15	3	15	y	0.07	1	13	1	13	n	0.20	3	12	3	12	y	0.0126373150667957	-5.37075052858631	down	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
