#ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLPDCA_1:Ratio	CLPDCA_1:Alt_average_sj	CLPDCA_1:Model_average_sj	CLPDCA_1:Alt_sj	CLPDCA_1:Model_sj	CLPDCA_1:isfiltered	CLPDCA_2:Ratio	CLPDCA_2:Alt_average_sj	CLPDCA_2:Model_average_sj	CLPDCA_2:Alt_sj	CLPDCA_2:Model_sj	CLPDCA_2:isfiltered	CLPDCA_3:Ratio	CLPDCA_3:Alt_average_sj	CLPDCA_3:Model_average_sj	CLPDCA_3:Alt_sj	CLPDCA_3:Model_sj	CLPDCA_3:isfiltered	CLPDCA_4:Ratio	CLPDCA_4:Alt_average_sj	CLPDCA_4:Model_average_sj	CLPDCA_4:Alt_sj	CLPDCA_4:Model_sj	CLPDCA_4:isfiltered	CLP_1:Ratio	CLP_1:Alt_average_sj	CLP_1:Model_average_sj	CLP_1:Alt_sj	CLP_1:Model_sj	CLP_1:isfiltered	CLP_2:Ratio	CLP_2:Alt_average_sj	CLP_2:Model_average_sj	CLP_2:Alt_sj	CLP_2:Model_sj	CLP_2:isfiltered	CLP_3:Ratio	CLP_3:Alt_average_sj	CLP_3:Model_average_sj	CLP_3:Alt_sj	CLP_3:Model_sj	CLP_3:isfiltered	CLP_4:Ratio	CLP_4:Alt_average_sj	CLP_4:Model_average_sj	CLP_4:Alt_sj	CLP_4:Model_sj	CLP_4:isfiltered	Sham_1:Ratio	Sham_1:Alt_average_sj	Sham_1:Model_average_sj	Sham_1:Alt_sj	Sham_1:Model_sj	Sham_1:isfiltered	Sham_2:Ratio	Sham_2:Alt_average_sj	Sham_2:Model_average_sj	Sham_2:Alt_sj	Sham_2:Model_sj	Sham_2:isfiltered	Sham_3:Ratio	Sham_3:Alt_average_sj	Sham_3:Model_average_sj	Sham_3:Alt_sj	Sham_3:Model_sj	Sham_3:isfiltered	Sham_4:Ratio	Sham_4:Alt_average_sj	Sham_4:Model_average_sj	Sham_4:Alt_sj	Sham_4:Model_sj	Sham_4:isfiltered	CLP_vs_Sham:Pvalue	CLP_vs_Sham:Tvalue	CLP_vs_Sham:DiffType	CLPDCA_vs_Sham:Pvalue	CLPDCA_vs_Sham:Tvalue	CLPDCA_vs_Sham:DiffType	Gene	Symbol	Chr	GeneType	Description
known_NIR_395	chr1	170027582	170034683	-	170027582;170032772	170032684;170034683	ES	ENSMUST00000150821.8	known	0.00	0	25.0	0	31;19	n	0.00	0	15.5	0	17;14	n	0.03	1	38.0	1	40;36	n	0.02	1	41.0	1	42;40	n	0.02	1	53.5	1	56;51	n	0.00	0	28.0	0	31;25	n	0.00	0	39.0	0	41;37	n	0.03	1	30.0	1	33;27	n	0.05	1	20.0	1	19;21	n	0.09	4	38.5	4	45;32	y	0.06	1	16.5	1	21;12	n	0.09	4	42.0	4	45;39	y	0.00418573061200276	-4.70678724331642	down	0.00418573061200276	-4.70678724331642	down	ENSMUSG00000026667.15	Uhmk1	chr1	protein_coding	U2AF homology motif (UHM) kinase 1
known_NIR_580	chr1	191308063	191314511	+	191308063	191318636	A3SS	ENSMUST00000194785.2	known	0.87	20	3	20	3	y	0.95	20	1	20	1	n	0.97	37	1	37	1	n	0.90	38	4	38	4	y	0.93	54	4	54	4	y	0.87	20	3	20	3	y	0.96	23	1	23	1	n	0.93	13	1	13	1	n	1.00	15	0	15	0	n	1.00	43	0	43	0	n	1.00	10	0	10	0	n	1.00	37	0	37	0	n	0.0261486717497017	-4.10605030690164	down	0.0428029670057896	-3.38910840441737	down	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_615	chr1	24069609	24069823	-	24069021	24069823	A3SS	ENSMUST00000188712.7	known	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.10	4	36	4	36	y	0.04	1	25	1	25	n	0.07	2	27	2	27	y	0.14	3	18	3	18	y	0.00	0	18	0	18	n	0.04	1	27	1	27	n	0.25	4	12	4	12	y	0.21	3	11	3	11	y	0.27	4	11	4	11	y	0.12	4	28	4	28	y	0.015329932356033	-3.3717089216941	down	0.00612469520812448	-4.35056424634518	down	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_748	chr1	45958330	45960316	-	45958160	45960316	A3SS	ENSMUST00000027137.11	known	0.02	3	132	3	132	y	0.02	2	101	2	101	y	0.02	3	125	3	125	y	0.00	0	129	0	129	n	0.02	3	175	3	175	y	0.00	0	54	0	54	n	0.01	2	145	2	145	y	0.01	1	118	1	118	n	0.02	2	85	2	85	y	0.04	8	218	8	218	y	0.03	3	113	3	113	y	0.04	8	202	8	202	y	0.0121941868183737	-3.57623736407562	down	0.0448673860955737	-2.52810291480115	down	ENSMUSG00000025993.11	Slc40a1	chr1	protein_coding	solute carrier family 40 (iron-regulated transporter), member 1
known_NIR_830	chr1	58752818	58756419	+	58752818	58765465	A3SS	ENSMUST00000140940.8	known	0.02	1	43	1	43	n	0.03	1	34	1	34	n	0.07	4	56	4	56	y	0.02	1	56	1	56	n	0.07	6	79	6	79	y	0.04	2	44	2	44	y	0.00	0	49	0	49	n	0.04	2	55	2	55	y	0.08	4	46	4	46	y	0.12	7	53	7	53	y	0.17	5	25	5	25	y	0.08	4	49	4	49	y	0.0313651947649638	-2.91385758707179	down	0.0270633053739892	-3.16943152114814	down	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_991	chr1	75412655	75413422	+	75412837	75413422	5pMXE	ENSMUST00000131545.8	known	0.86	24	4	24	4	y	0.89	31	4	31	4	y	0.87	55	8	55	8	y	0.93	26	2	26	2	y	0.93	41	3	41	3	y	0.88	28	4	28	4	y	0.91	40	4	40	4	y	0.93	28	2	28	2	y	1.00	29	0	29	0	n	0.97	33	1	33	1	n	1.00	21	0	21	0	n	0.93	39	3	39	3	y	0.0250159174921613	-3.06954565901271	down	0.00846561647696945	-3.85727138144589	down	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1016	chr1	82713228	82728241	+	82713228;82724863	82724804;82728241	ES	ENSMUST00000073025.12	known	0.57	54	41.0	54	13;69	y	0.59	56	39.5	56	21;58	y	0.55	58	48.0	58	11;85	y	0.60	50	33.0	50	18;48	y	0.49	40	41.5	40	16;67	y	0.46	22	25.5	22	11;40	y	0.48	58	63.0	58	34;92	y	0.61	37	24.0	37	12;36	y	0.61	41	26.0	41	12;40	y	0.66	78	40.5	78	15;66	y	0.67	67	33.0	67	14;52	y	0.60	64	43.5	64	25;62	y	0.0258098084701191	-3.27326835353989	down	0.0388802860849664	-2.76887462097269	down	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1165	chr1	92845848	92846660	+	92845848	92846595	A3SS	ENSMUST00000027487.15	known	0.00	0	126	0	126	n	0.00	0	112	0	112	n	0.00	0	89	0	89	n	0.00	0	143	0	143	n	0.05	8	160	8	160	y	0.00	0	48	0	48	n	0.00	0	143	0	143	n	0.00	0	83	0	83	n	0.05	6	107	6	107	y	0.05	7	144	7	144	y	0.05	7	132	7	132	y	0.08	13	156	13	156	y	0.0278992032043422	-3.08697453256516	down	0.00460968363730602	-7.66666666666667	down	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1205	chr1	9620169;9620872	9620786;9623148	+	9620169	9623148	cassetteExon	ENSMUST00000027044.15	known	0.01	0.5	67	1;0	67	n	0.01	1.0	76	1;1	76	n	0.00	0.0	28	0;0	28	n	0.00	0.5	104	0;1	104	n	0.01	1.0	100	2;0	100	n	0.00	0.0	50	0;0	50	n	0.01	0.5	97	1;0	97	n	0.01	0.5	48	1;0	48	n	0.01	1.0	77	0;2	77	n	0.02	2.5	143	3;2	143	y	0.02	1.5	81	3;0	81	n	0.02	2.0	93	4;0	93	n	0.0300197452875444	-2.82842712474619	down	0.017467049804449	-3.27326835353989	down	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_2333	chr11	109541899	109544605	+	109541450	109544605	A5SS	ENSMUST00000106677.8	known	0.94	187	13	187	13	y	0.97	151	5	151	5	y	0.94	377	24	377	24	y	0.97	233	8	233	8	y	0.96	272	10	272	10	y	0.96	191	8	191	8	y	0.94	246	17	246	17	y	0.94	155	10	155	10	y	0.99	130	1	130	1	n	0.99	290	4	290	4	y	0.99	154	2	154	2	y	1.00	265	0	265	0	n	0.0023172109243023	-6.75511502103171	down	0.0186337975543464	-4.16025147168921	down	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
known_NIR_2456	chr11	116187624	116191092	-	116188489	116191092	A3SS&ES	ENSMUST00000139699.8	known	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.50	2	2	2	2	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.0429413522910037	-2.56851806843427	down	0.0255707655625445	-2.95127636265631	down	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_3076	chr11	62236144	62240221	-	62236144	62240179	A5SS	ENSMUST00000101066.10	known	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.03	1	38	1	38	n	0.00	0	44	0	44	n	0.00	0	59	0	59	n	0.00	0	28	0	28	n	0.00	0	46	0	46	n	0.00	0	39	0	39	n	0.03	1	33	1	33	n	0.02	1	44	1	44	n	0.07	3	40	3	40	y	0.07	3	38	3	38	y	0.0364463452548051	-3.61222822798952	down	0.0480970961576868	-2.64231303630327	down	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3180	chr11	69810162;69810304	69810275;69811989	-	69810162;69811260	69811167;69811989	MXE	ENSMUST00000043419.10	known	0.09	1.5	15.0	3;0	22;8	n	0.12	1.5	10.5	3;0	18;3	n	0.02	0.5	23.0	1;0	25;21	n	0.00	0.0	18.0	0;0	20;16	n	0.00	0.0	15.0	0;0	16;14	n	0.17	3.5	17.5	1;6	24;11	n	0.00	0.0	28.0	0;0	34;22	n	0.00	0.0	10.5	0;0	16;5	n	0.22	5.5	19.5	0;11	26;13	n	0.18	4.5	21.0	3;6	25;17	y	0.11	2.5	19.5	0;5	23;16	n	0.20	4.5	17.5	2;7	19;16	y	0.0419347854872636	-2.767714794535	down	0.0186083230973414	-3.23126718382944	down	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3967	chr12	54738868	54739560	-	54738880	54739560	A3SS	ENSMUST00000161592.8	known	0.00	0	62	0	62	n	0.00	0	62	0	62	n	0.00	0	119	0	119	n	0.02	2	90	2	90	y	0.00	0	97	0	97	n	0.00	0	46	0	46	n	0.00	0	92	0	92	n	0.00	0	47	0	47	n	0.05	3	58	3	58	y	0.05	5	98	5	98	y	0.03	3	90	3	90	y	0.03	3	94	3	94	y	0.00616537313883716	-6.92820323027551	down	0.00395758466635652	-4.58257569495584	down	ENSMUSG00000054302.16	Eapp	chr12	protein_coding	E2F-associated phosphoprotein
known_NIR_4071	chr12	72126430	72131305	-	72126430	72131423	A5SS	ENSMUST00000019862.3	known	0.02	1	50	1	50	n	0.02	1	50	1	50	n	0.03	1	29	1	29	n	0.00	0	67	0	67	n	0.05	3	60	3	60	y	0.00	0	23	0	23	n	0.02	1	65	1	65	n	0.03	1	38	1	38	n	0.10	6	54	6	54	y	0.06	5	85	5	85	y	0.04	2	48	2	48	y	0.08	5	57	5	57	y	0.0365200450780456	-2.71360210119987	down	0.0187278849435457	-3.65563077506965	down	ENSMUSG00000019718.9	L3hypdh	chr12	protein_coding	L-3-hydroxyproline dehydratase (trans-)
known_NIR_4503	chr13	24005058	24006278	+	24005092	24006278	A5SS	ENSMUST00000141717.8	known	0.55	323	259	323	259	y	0.57	401	299	401	299	y	0.54	390	336	390	336	y	0.55	338	279	338	279	y	0.57	348	267	348	267	y	0.56	173	135	173	135	y	0.61	472	305	472	305	y	0.54	137	116	137	116	y	0.63	360	211	360	211	y	0.61	572	361	572	361	y	0.61	439	283	439	283	y	0.61	502	324	502	324	y	0.0489906927564684	-2.89470384406204	down	0.000302865674735824	-7.7771377104782	down	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4654	chr13	4486446	4497032	+	4486446	4488489	A3SS&ES	ENSMUST00000021630.15	known	0.01	26	2256	26	2256	y	0.00	0	1628	0	1628	n	0.00	0	53	0	53	n	0.01	21	2288	21	2288	y	0.00	0	2473	0	2473	n	0.00	0	78	0	78	n	0.01	36	2592	36	2592	y	0.00	0	306	0	306	n	0.01	38	2783	38	2783	y	0.02	65	3839	65	3839	y	0.02	45	2832	45	2832	y	0.01	34	2986	34	2986	y	0.017467049804449	-3.27326835353989	down	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
known_NIR_4665	chr13	4657202	4657390	-	4652796	4657390	A3SS	ENSMUST00000091848.7	known	0.00	0	122	0	122	n	0.00	0	97	0	97	n	0.00	0	64	0	64	n	0.00	0	124	0	124	n	0.00	0	149	0	149	n	0.00	0	57	0	57	n	0.01	2	137	2	137	y	0.00	0	61	0	61	n	0.02	2	112	2	112	y	0.01	1	162	1	162	n	0.01	1	116	1	116	n	0.01	1	124	1	124	n	0.0300197452875444	-2.82842712474619	down	0.0153924380733023	-5	down	ENSMUSG00000045410.19	Akr1e1	chr13	protein_coding	aldo-keto reductase family 1, member E1
known_NIR_4688	chr13	49361622	49369230	-	49361622	49369413	A5SS	ENSMUST00000048946.7	known	0.37	11	19	11	19	y	0.52	12	11	12	11	y	0.31	10	22	10	22	y	0.45	14	17	14	17	y	0.42	14	19	14	19	y	0.36	8	14	8	14	y	0.49	20	21	20	21	y	0.30	8	19	8	19	y	0.56	14	11	14	11	y	0.58	21	15	21	15	y	0.62	15	9	15	9	y	0.52	16	15	16	15	y	0.0144077139997796	-3.88301000512493	down	0.0332370393363202	-3.1253547788767	down	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
known_NIR_5768	chr14	66207348	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.06	185	2904	185	2904	y	0.05	144	2762	144	2762	y	0.05	203	3826	203	3826	y	0.06	242	3986	242	3986	y	0.05	260	4786	260	4786	y	0.05	129	2598	129	2598	y	0.07	272	3905	272	3905	y	0.06	178	2995	178	2995	y	0.07	186	2653	186	2653	y	0.08	337	3960	337	3960	y	0.08	203	2449	203	2449	y	0.07	279	3453	279	3453	y	0.0264653665333921	-3.13049516849971	down	0.00271368203509378	-4.89897948556636	down	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5902	chr14	8512701	8515107	+	8508578	8515107	A5SS	ENSMUST00000065865.10	known	0.32	25	53	25	53	y	0.25	16	48	16	48	y	0.22	14	50	14	50	y	0.27	25	66	25	66	y	0.29	23	57	23	57	y	0.13	5	34	5	34	y	0.24	21	65	21	65	y	0.31	15	33	15	33	y	0.37	24	41	24	41	y	0.42	35	48	35	48	y	0.44	28	36	28	36	y	0.40	31	46	31	46	y	0.0202061775643672	-3.84049940319149	down	0.0020633990190637	-5.52764497179127	down	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_7065	chr16	21614725;21625869	21625721;21627428	+	21614725;21621847	21619465;21627428	MXE	ENSMUST00000209728.2	known	0.24	2.5	8.0	1;4	8;8	n	0.00	0.0	2.0	0;0	4;0	n	0.17	1.5	7.5	0;3	9;6	n	0.16	1.5	8.0	0;3	14;2	n	0.30	3.5	8.0	0;7	11;5	n	0.07	0.5	7.0	0;1	11;3	n	0.10	1.0	9.5	2;0	12;7	n	0.14	0.5	3.0	1;0	5;1	n	0.52	5.5	5.0	8;3	5;5	y	0.32	5.5	11.5	2;9	21;2	y	0.50	7.0	7.0	7;7	13;1	n	0.54	6.5	5.5	5;8	10;1	n	0.0045335662061577	-4.40734943299123	down	0.00381764337806529	-4.56822354930589	down	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7213	chr16	32877275	32877506	+	32876925	32877506	A5SS	ENSMUST00000115079.8	known	0.03	4	113	4	113	y	0.04	5	116	5	116	y	0.02	2	103	2	103	y	0.04	5	113	5	113	y	0.04	5	127	5	127	y	0.00	0	51	0	51	n	0.00	0	132	0	132	n	0.00	0	76	0	76	n	0.06	6	96	6	96	y	0.09	11	114	11	114	y	0.05	5	99	5	99	y	0.08	12	131	12	131	y	0.00450535854027133	-4.43129367525598	down	0.017711293154785	-3.63803437554499	down	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7244	chr16	35892507	35905387	+	35892507;35903186	35903061;35905387	ES	ENSMUST00000164916.9	known	0.01	1	125.5	1	94;157	n	0.01	1	127.0	1	96;158	n	0.01	2	135.5	2	91;180	y	0.01	2	150.5	2	112;189	y	0.01	2	160.0	2	111;209	y	0.00	0	61.5	0	52;71	n	0.01	2	187.0	2	130;244	y	0.00	0	90.5	0	70;111	n	0.04	6	151.0	6	124;178	y	0.02	4	184.0	4	154;214	y	0.05	7	136.0	7	93;179	y	0.03	5	162.0	5	112;212	y	0.0122088038324649	-4.24264068711929	down	0.030466291662171	-3.87298334620742	down	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7603	chr17	13135516;13136770	13136685;13136930	+	13135516	13136930	cassetteExon	ENSMUST00000089024.13	known	0.96	176.5	7	166;187	7	y	0.96	151.0	6	148;154	6	y	0.97	197.0	7	197;197	7	y	0.97	266.5	9	270;263	9	y	0.96	225.0	10	229;221	10	y	0.93	89.0	7	94;84	7	y	0.95	241.5	13	256;227	13	y	0.96	127.5	5	146;109	5	y	0.99	166.0	1	174;158	1	n	0.99	278.0	2	293;263	2	y	0.98	205.5	5	191;220	5	y	0.99	278.5	3	269;288	3	y	0.00892448323451219	-5.00000000000002	down	0.00114013066076552	-5.89188303637181	down	ENSMUSG00000068039.14	Tcp1	chr17	protein_coding	t-complex protein 1
known_NIR_7746	chr17	25077283	25079920	+	25076598	25079920	A5SS	ENSMUST00000164251.8	known	0.00	3	1318	3	1318	y	0.00	3	1177	3	1177	y	0.00	0	506	0	506	n	0.00	3	1459	3	1459	y	0.01	8	1418	8	1418	y	0.00	0	332	0	332	n	0.00	4	1599	4	1599	y	0.00	0	548	0	548	n	0.01	15	1193	15	1193	y	0.01	20	1819	20	1819	y	0.02	29	1565	29	1565	y	0.01	19	1665	19	1665	y	0.0300197452875444	-2.82842712474619	down	0.0153924380733023	-5	down	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7809	chr17	26003699	26004402	-	26003699	26003978	5pMXE	ENSMUST00000129917.8	known	0.07	2	26	2	26	y	0.03	1	28	1	28	n	0.06	2	30	2	30	y	0.09	2	20	2	20	y	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.11	3	24	3	24	y	0.12	1	7	1	7	n	0.11	2	16	2	16	y	0.15	5	29	5	29	y	0.26	9	25	9	25	y	0.17	4	20	4	20	y	0.0464859576732244	-2.50207014881394	down	0.0331582358207878	-3.22623653046977	down	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7935	chr17	28537381	28537792	+	28537381	28539764	A3SS	ENSMUST00000114803.9	known	0.05	1	20	1	20	n	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.13	3	20	3	20	y	0.04	2	43	2	43	y	0.12	3	22	3	22	y	0.14	4	25	4	25	y	0.0182101412797831	-4.70102133515957	down	0.0484695262732276	-2.4828176658071	down	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_8179	chr17	33999617	33999757	-	33999621	33999757	A3SS	ENSMUST00000002360.17	known	0.03	6	201	6	201	y	0.06	15	236	15	236	y	0.02	7	327	7	327	y	0.04	10	269	10	269	y	0.05	20	379	20	379	y	0.03	13	388	13	388	y	0.04	21	538	21	538	y	0.02	8	337	8	337	y	0.08	9	100	9	100	y	0.06	21	317	21	317	y	0.05	10	200	10	200	y	0.10	20	185	20	185	y	0.0343399639072225	-2.92306411107734	down	0.0490306765884853	-2.50106360353674	down	ENSMUSG00000002289.17	Angptl4	chr17	protein_coding	angiopoietin-like 4
known_NIR_8455	chr17	46329805;46333274	46333203;46334991	-	46329805;46332048	46331917;46334991	MXE	ENSMUST00000071648.12	known	0.12	33.0	244.0	2;64	371;117	y	0.13	26.0	181.5	2;50	276;87	y	0.10	30.5	289.5	1;60	391;188	n	0.14	35.5	221.5	0;71	326;117	n	0.11	41.0	339.0	1;81	508;170	n	0.14	14.5	91.5	0;29	128;55	n	0.12	30.5	221.5	1;60	313;130	n	0.11	15.0	117.5	0;30	171;64	n	0.15	40.5	234.0	1;80	344;124	n	0.14	47.0	294.0	1;93	420;168	n	0.16	46.0	242.5	5;87	353;132	y	0.15	54.0	311.5	4;104	469;154	y	0.0154590667337747	-3.67423461417477	down	0.0401694278344841	-2.90548799087456	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8567	chr17	56904815	56905644	+	56904815	56906623	A3SS	ENSMUST00000182951.8	known	0.77	36	11	36	11	y	0.76	28	9	28	9	y	0.77	48	14	48	14	y	0.88	37	5	37	5	y	0.82	42	9	42	9	y	0.79	30	8	30	8	y	0.82	47	10	47	10	y	0.86	30	5	30	5	y	0.88	43	6	43	6	y	0.93	40	3	40	3	y	0.93	28	2	28	2	y	0.96	52	2	52	2	y	0.00360787624846147	-4.67238363484516	down	0.0116275744957036	-3.9496835316263	down	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8741	chr17	8391840	8401060	+	8391840	8394351	3pMXE	ENSMUST00000162586.2	known	0.92	36	3	36	3	y	0.92	24	2	24	2	y	0.85	40	7	40	7	y	0.94	30	2	30	2	y	0.91	32	3	32	3	y	0.88	22	3	22	3	y	0.89	42	5	42	5	y	0.93	25	2	25	2	y	1.00	28	0	28	0	n	0.92	35	3	35	3	y	1.00	25	0	25	0	n	1.00	42	0	42	0	n	0.0215564306587065	-3.38910840441736	down	0.0417695628347326	-2.58011474249358	down	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
known_NIR_8894	chr18	32269000	32271001	-	32269000	32271182	A5SS	ENSMUST00000234651.2	known	0.01	5	480	5	480	y	0.02	8	493	8	493	y	0.02	5	295	5	295	y	0.01	8	645	8	645	y	0.02	9	578	9	578	y	0.01	3	206	3	206	y	0.01	6	592	6	592	y	0.01	3	326	3	326	y	0.03	14	516	14	516	y	0.03	22	790	22	790	y	0.02	12	585	12	585	y	0.02	15	724	15	724	y	0.017467049804449	-3.27326835353989	down	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8901	chr18	32558020	32565036	+	32558020;32564795	32564724;32565036	ES	ENSMUST00000234857.2	known	0.67	21	10.5	21	6;15	y	0.57	16	12.0	16	9;15	y	0.57	21	16.0	21	10;22	y	0.64	21	12.0	21	12;12	y	0.51	19	18.5	19	21;16	y	0.71	15	6.0	15	6;6	y	0.55	58	47.5	58	41;54	y	0.57	15	11.5	15	11;12	y	0.79	15	4.0	15	2;6	y	0.74	21	7.5	21	7;8	y	0.69	22	10.0	22	11;9	y	0.68	25	11.5	25	6;17	y	0.0403752269287993	-2.78151794983659	down	0.0199932666787928	-3.1429363309631	down	ENSMUSG00000024381.17	Bin1	chr18	protein_coding	bridging integrator 1
known_NIR_9663	chr19	4198728	4199341	+	4198735	4199341	A5SS	ENSMUST00000008893.9	known	0.27	24	65	24	65	y	0.29	17	42	17	42	y	0.21	19	71	19	71	y	0.21	21	78	21	78	y	0.23	27	90	27	90	y	0.19	11	46	11	46	y	0.29	26	65	26	65	y	0.21	7	26	7	26	y	0.27	22	60	22	60	y	0.34	44	84	44	84	y	0.33	28	57	28	57	y	0.35	39	71	39	71	y	0.0173835077428064	-3.29187053352629	down	0.0304153685631672	-2.83383850431243	down	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_10252	chr2	120398242	120414750	+	120398287	120414750	A5SS	ENSMUST00000110711.9	known	0.03	2	64	2	64	y	0.02	1	52	1	52	n	0.07	6	83	6	83	y	0.04	4	89	4	89	y	0.05	6	105	6	105	y	0.09	5	53	5	53	y	0.03	2	66	2	66	y	0.04	2	49	2	49	y	0.12	5	35	5	35	y	0.07	4	56	4	56	y	0.12	6	42	6	42	y	0.11	9	73	9	73	y	0.0255806290931841	-2.95999821013012	down	0.00690397257737317	-4.04411160944866	down	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
known_NIR_11313	chr2	34985935	34990577	-	34985935	34987900	A5SS&ES	ENSMUST00000154817.2	known	0.01	13	1325	13	1325	y	0.01	11	968	11	968	y	0.01	3	501	3	501	y	0.02	35	1589	35	1589	y	0.01	21	1828	21	1828	y	0.01	3	340	3	340	y	0.02	23	1502	23	1502	y	0.02	15	662	15	662	y	0.02	24	1210	24	1210	y	0.03	49	1707	49	1707	y	0.02	20	1206	20	1206	y	0.03	46	1727	46	1727	y	0.0498252627805767	-2.44948974278318	down	0.017467049804449	-3.27326835353989	down	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11548	chr2	72817976	72818712	+	72817976	72818716	A3SS	ENSMUST00000123087.8	known	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.11	2	17	2	17	y	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.30	3	7	3	7	y	0.10	1	9	1	9	n	0.039654254724911	-2.67171713582518	down	0.0187314132672581	-4.65228726800424	down	ENSMUSG00000063714.16	Sp3os	chr2	lncRNA	trans-acting transcription factor 3, opposite strand
known_NIR_11837	chr3	108107478	108108076	-	108107478	108107943	A5SS	ENSMUST00000106655.2	known	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.44	4	5	4	5	n	0.20	1	4	1	4	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.83	5	1	5	1	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.67	2	1	2	1	n	0.0233739641680522	-3.07693255638256	down	0.0168426930341452	-3.28235096798455	down	ENSMUSG00000048796.8	Cyb561d1	chr3	protein_coding	cytochrome b-561 domain containing 1
known_NIR_11871	chr3	116298095	116300484	-	116298117	116300484	A3SS	ENSMUST00000000348.15	known	0.10	3	27	3	27	y	0.04	1	23	1	23	n	0.06	3	47	3	47	y	0.14	4	24	4	24	y	0.09	4	40	4	40	y	0.00	0	28	0	28	n	0.10	3	26	3	26	y	0.00	0	30	0	30	n	0.23	5	17	5	17	y	0.24	8	26	8	26	y	0.14	4	24	4	24	y	0.15	4	23	4	23	y	0.00949036021486836	-3.75574812709948	down	0.0228889170754655	-3.06316482145579	down	ENSMUSG00000000339.15	Rtca	chr3	protein_coding	RNA 3'-terminal phosphate cyclase
known_NIR_12113	chr3	157728996	157732362	-	157728996;157729868	157729760;157732362	ES	ENSMUST00000126716.9	known	0.27	2	5.5	2	7;4	y	0.00	0	0.5	0	0;1	n	0.31	2	4.5	2	5;4	y	0.25	1	3.0	1	3;3	n	0.00	0	7.0	0	5;9	n	0.00	0	3.0	0	1;5	n	0.00	0	6.5	0	3;10	n	0.00	0	3.0	0	3;3	n	0.46	3	3.5	3	3;4	y	0.46	6	7.0	6	6;8	y	0.60	6	4.0	6	1;7	n	0.42	4	5.5	4	0;11	n	0.00116137955585026	-12.2860296297938	down	0.0201454920671461	-3.44251561425776	down	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12372	chr3	88301877;88303117	88303021;88303212	-	88301877	88303212	cassetteExon	ENSMUST00000193338.6	known	0.13	5.0	34	7;3	34	y	0.13	4.5	31	4;5	31	y	0.12	2.0	14	2;2	14	y	0.16	5.5	29	6;5	29	y	0.11	5.5	44	5;6	44	y	0.16	3.5	19	5;2	19	y	0.04	2.0	46	4;0	46	n	0.03	0.5	17	0;1	17	n	0.20	6.0	24	4;8	24	y	0.15	9.5	54	10;9	54	y	0.16	7.5	40	9;6	40	y	0.21	6.5	25	9;4	25	y	0.0452609702867676	-2.79130200918403	down	0.0476248272607546	-2.63493019696104	down	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
known_NIR_12741	chr4	108687780	108688903	-	108687780	108689610	A5SS	ENSMUST00000102740.8	known	0.50	1	1	1	1	n	0.25	3	9	3	9	y	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.64	7	4	7	4	y	0.50	3	3	3	3	n	0.00814268557971833	-3.91068482467373	down	0.033034644088856	-2.78028658483602	down	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_13121	chr4	132997120;132998125	132997981;132998274	-	132997120	132998274	cassetteExon	ENSMUST00000105907.9	known	0.05	4.0	69	4;4	69	y	0.02	1.5	65	0;3	65	n	0.07	6.0	76	6;6	76	y	0.05	3.5	65	4;3	65	y	0.04	2.5	61	5;0	61	n	0.02	0.5	30	1;0	30	n	0.03	2.0	76	0;4	76	n	0.07	3.0	41	4;2	41	y	0.08	4.0	45	2;6	45	y	0.07	6.5	85	5;8	85	y	0.10	6.0	56	6;6	56	y	0.07	5.5	78	3;8	78	y	0.0257177704619378	-3.09838667696593	down	0.0455487344230518	-2.6	down	ENSMUSG00000028857.17	Tmem222	chr4	protein_coding	transmembrane protein 222
known_NIR_13607	chr4	43570906	43571189	-	43570911	43571189	A3SS	ENSMUST00000128403.8	known	0.00	0	17	0	17	n	0.00	0	17	0	17	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.00	0	23	0	23	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.11	2	16	2	16	y	0.12	3	21	3	21	y	0.13	2	13	2	13	y	0.11	2	16	2	16	y	0.000148250183677307	-24.5449494897534	down	0.000148250183677307	-24.5449494897534	down	ENSMUSG00000028467.16	Gba2	chr4	protein_coding	glucosidase beta 2
known_NIR_13707	chr4	59517755	59524404	-	59517755	59524395	A5SS	ENSMUST00000030076.12	known	0.00	0	23	0	23	n	0.08	1	12	1	12	n	0.05	2	38	2	38	y	0.07	2	25	2	25	y	0.08	4	44	4	44	y	0.11	3	24	3	24	y	0.15	4	22	4	22	y	0.00	0	20	0	20	n	0.12	3	21	3	21	y	0.19	10	43	10	43	y	0.29	4	10	4	10	y	0.21	8	30	8	30	y	0.047687337579636	-2.48750378291733	down	0.0144418414102671	-3.88658565297216	down	ENSMUSG00000028382.16	Ptbp3	chr4	protein_coding	polypyrimidine tract binding protein 3
known_NIR_13820	chr4	9576973	9583812	-	9542310	9583812	A3SS	ENSMUST00000078139.13	known	0.71	30	12	30	12	y	0.71	35	14	35	14	y	0.65	74	39	74	39	y	0.60	46	31	46	31	y	0.68	76	36	76	36	y	0.54	32	27	32	27	y	0.70	43	18	43	18	y	0.58	41	30	41	30	y	0.78	39	11	39	11	y	0.72	55	21	55	21	y	0.78	31	9	31	9	y	0.74	42	15	42	15	y	0.0363564566267671	-3.13762014816561	down	0.0373908135650445	-2.86731172181664	down	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13937	chr5	108724545;108725115	108724694;108728773	-	108724545	108728773	cassetteExon	ENSMUST00000156110.8	known	0.06	5.5	82	2;9	82	y	0.04	4.0	89	6;2	89	y	0.02	3.0	134	3;3	134	y	0.06	5.5	89	7;4	89	y	0.05	7.0	121	6;8	121	y	0.05	2.5	49	2;3	49	y	0.09	10.5	108	9;12	108	y	0.07	5.0	64	2;8	64	y	0.09	5.5	57	6;5	57	y	0.11	11.5	98	13;10	98	y	0.09	8.5	88	10;7	88	y	0.10	8.5	80	8;9	80	y	0.0339390678350573	-3.03614588222994	down	0.00622029148750037	-4.9045433482176	down	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_14239	chr5	125119031	125119809	-	125119028	125119809	A3SS	ENSMUST00000125053.8	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.29	2	5	2	5	n	0.25	4	12	4	12	y	0.0424460941371839	-2.90361287742279	down	0.000473822331593367	-6.85772120175293	down	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14249	chr5	125528836;125529309	125529212;125531390	+	125528836	125531390	cassetteExon	ENSMUST00000049040.14	known	0.01	0.5	61	0;1	61	n	0.02	1.5	76	0;3	76	n	0.03	2.0	65	3;1	65	n	0.01	0.5	76	1;0	76	n	0.04	4.0	108	3;5	108	y	0.04	2.0	52	1;3	52	n	0.03	3.0	100	3;3	100	y	0.03	2.0	66	2;2	66	y	0.06	4.5	76	2;7	76	y	0.05	5.5	115	5;6	115	y	0.06	5.5	91	6;5	91	y	0.05	4.5	82	3;6	82	y	0.0027136820350938	-4.89897948556636	down	0.00118023553704493	-6.70820393249937	down	ENSMUSG00000037905.14	Bri3bp	chr5	protein_coding	Bri3 binding protein
known_NIR_14531	chr5	144817510	144818428	-	144817519	144818428	A3SS	ENSMUST00000110677.8	known	0.18	4	18	4	18	y	0.09	2	21	2	21	y	0.17	4	20	4	20	y	0.14	3	18	3	18	y	0.21	9	33	9	33	y	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.23	5	17	5	17	y	0.26	12	35	12	35	y	0.26	7	20	7	20	y	0.39	11	17	11	17	y	0.0132376110085231	-3.61836454540875	down	0.0206412086355116	-3.41226674755003	down	ENSMUSG00000038780.15	Smurf1	chr5	protein_coding	SMAD specific E3 ubiquitin protein ligase 1
known_NIR_14856	chr5	35998745;36006249	36006148;36014472	+	35998745	36014472	cassetteExon	ENSMUST00000151636.8	known	0.58	5.5	4	6;5	4	y	0.40	2.0	3	1;3	3	n	0.33	1.5	3	3;0	3	n	0.60	3.0	2	1;5	2	n	0.78	7.0	2	5;9	2	y	0.60	1.5	1	1;2	1	n	0.60	1.5	1	1;2	1	n	0.50	2.0	2	2;2	2	n	1.00	1.5	0	1;2	0	n	0.64	3.5	2	1;6	2	n	1.00	1.5	0	1;2	0	n	1.00	2.0	0	2;2	0	n	0.0413601070500836	-2.70426394389691	down	0.0097669022892441	-3.86228714671179	down	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_15143	chr5	97247539	97251219	-	97247602	97251219	A3SS	ENSMUST00000069453.9	known	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.07	2	25	2	25	y	0.14	2	12	2	12	y	0.19	4	17	4	17	y	0.0125052267205118	-4.05507201200625	down	0.0161684078828462	-3.92307692307692	down	ENSMUSG00000055725.12	Paqr3	chr5	protein_coding	progestin and adipoQ receptor family member III
known_NIR_15307	chr6	120376043	120379467	+	120376018	120379467	A5SS	ENSMUST00000135802.8	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.08	2	22	2	22	y	0.09	1	10	1	10	n	0.25	5	15	5	15	y	0.25	3	9	3	9	y	0.11	2	16	2	16	y	0.0294336825620481	-3.23784440077598	down	0.0287478974831372	-3.47771306881065	down	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
known_NIR_15551	chr6	146914016;146914445	146914416;146917720	+	146914016	146917720	cassetteExon	ENSMUST00000016631.14	known	0.14	2.5	16	3;2	16	y	0.11	2.0	16	2;2	16	y	0.07	3.0	38	3;3	38	y	0.08	1.5	17	2;1	17	n	0.10	3.5	32	4;3	32	y	0.12	1.5	11	2;1	11	n	0.17	4.0	20	4;4	20	y	0.09	2.0	20	3;1	20	n	0.18	3.0	14	3;3	14	y	0.25	6.5	20	8;5	20	y	0.20	3.0	12	4;2	12	y	0.17	5.0	24	4;6	24	y	0.0191029704006164	-3.17887765695611	down	0.00585615722854658	-4.20084025208403	down	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15630	chr6	29356696	29361559	+	29356696	29361293	A3SS&ES	ENSMUST00000173694.5	known	0.44	41	53	41	53	y	0.36	27	48	27	48	y	0.33	131	265	131	265	y	0.38	54	87	54	87	y	0.40	83	124	83	124	y	0.39	82	130	82	130	y	0.40	67	101	67	101	y	0.33	71	146	71	146	y	0.51	39	38	39	38	y	0.58	86	63	86	63	y	0.53	39	34	39	34	y	0.48	86	92	86	92	y	0.00195568812564737	-5.38516480713451	down	0.00338351652056125	-4.70871261835897	down	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15753	chr6	40448759	40449005	+	40448393	40449005	A5SS	ENSMUST00000114779.9	known	0.31	22	48	22	48	y	0.27	15	40	15	40	y	0.20	12	47	12	47	y	0.28	18	47	18	47	y	0.37	28	48	28	48	y	0.29	9	22	9	22	y	0.31	23	51	23	51	y	0.29	10	24	10	24	y	0.38	21	34	21	34	y	0.35	28	51	28	51	y	0.41	28	41	28	41	y	0.38	24	40	24	40	y	0.0333989563195473	-2.88296295672283	down	0.00897217592865727	-4.3726973286189	down	ENSMUSG00000029911.15	Ssbp1	chr6	protein_coding	single-stranded DNA binding protein 1
known_NIR_15842	chr6	48815299	48817930	-	48815299	48817295	5pMXE	ENSMUST00000164733.4	known	0.38	255	415	255	415	y	0.33	246	503	246	503	y	0.37	427	741	427	741	y	0.46	340	396	340	396	y	0.38	465	753	465	753	y	0.30	222	516	222	516	y	0.45	441	533	441	533	y	0.35	329	622	329	622	y	0.48	296	321	296	321	y	0.44	352	444	352	444	y	0.50	248	246	248	246	y	0.48	314	342	314	342	y	0.0366777859382481	-3.10756082910204	down	0.0372490825916779	-3	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_16374	chr7	105039559;105040874	105040784;105049091	-	105039559	105049091	cassetteExon	ENSMUST00000179474.9	known	0.04	0.5	11	1;0	11	n	0.14	1.0	6	0;2	6	n	0.18	2.0	9	4;0	9	n	0.00	0.0	16	0;0	16	n	0.07	1.5	20	3;0	20	n	0.00	0.0	6	0;0	6	n	0.10	1.5	13	2;1	13	n	0.09	1.0	10	2;0	10	n	0.30	3.0	7	4;2	7	y	0.30	3.5	8	4;3	8	y	0.47	3.5	4	4;3	4	y	0.14	3.0	18	6;0	18	n	0.0328519430501247	-3.34277792549592	down	0.043787207603839	-2.67592133758737	down	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
known_NIR_16836	chr7	139697269	139706239	+	139697269	139708931	A3SS	ENSMUST00000209908.2	known	0.26	9	25	9	25	y	0.29	9	22	9	22	y	0.33	4	8	4	8	y	0.36	15	27	15	27	y	0.25	12	36	12	36	y	0.40	4	6	4	6	y	0.39	22	34	22	34	y	0.29	5	12	5	12	y	0.51	31	30	31	30	y	0.47	27	31	27	31	y	0.36	19	34	19	34	y	0.54	37	32	37	32	y	0.0440271584632386	-2.54328178783171	down	0.0181784214360078	-3.54826210058195	down	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16986	chr7	14161975	14180367	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.13	89	584	89	584	y	0.15	70	400	70	400	y	0.19	5	22	5	22	y	0.18	208	957	208	957	y	0.04	26	579	26	579	y	0.08	1	12	1	12	n	0.05	32	566	32	566	y	0.02	1	53	1	53	n	0.37	309	535	309	535	y	0.31	354	804	354	804	y	0.26	181	517	181	517	y	0.24	127	397	127	397	y	0.00132465182839255	-7.83480271683283	down	0.0126053350163037	-4.12604440405607	down	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16987	chr7	14161975	14180521	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.26	203	584	203	584	y	0.26	141	400	141	400	y	0.21	6	22	6	22	y	0.33	461	957	461	957	y	0.13	90	579	90	579	y	0.29	5	12	5	12	y	0.17	119	566	119	566	y	0.12	7	53	7	53	y	0.55	645	535	645	535	y	0.50	809	804	809	804	y	0.42	377	517	377	517	y	0.44	315	397	315	397	y	0.00112279739731996	-6.12904702146299	down	0.00164613304504555	-5.52134332092386	down	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_18153	chr7	98240091	98243959	-	98240091;98243017	98242538;98243959	ES	ENSMUST00000205276.2	known	0.11	1	8.0	1	12;4	n	0.11	1	8.0	1	11;5	n	0.12	2	15.0	2	21;9	y	0.22	2	7.0	2	9;5	y	0.14	2	12.5	2	20;5	y	0.00	0	4.5	0	7;2	n	0.18	4	18.0	4	19;17	y	0.20	2	8.0	2	12;4	y	0.38	4	6.5	4	13;0	n	0.24	3	9.5	3	14;5	y	0.24	4	12.5	4	19;6	y	0.24	2	6.5	2	9;4	y	0.0464463420000859	-2.54021365676096	down	0.0240782896929857	-3.06370137161255	down	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18518	chr8	126461088	126462807	+	126459970	126462807	A5SS	ENSMUST00000146055.8	known	0.86	38	6	38	6	y	0.82	31	7	31	7	y	0.70	14	6	14	6	y	0.91	21	2	21	2	y	0.76	26	8	26	8	y	0.86	12	2	12	2	y	0.90	35	4	35	4	y	0.75	15	5	15	5	y	0.91	32	3	32	3	y	1.00	35	0	35	0	n	1.00	40	0	40	0	n	1.00	21	0	21	0	n	0.0144001938907006	-3.69094295092221	down	0.0318920092734033	-3.09227894193366	down	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18594	chr8	14939118;14940623	14940492;14944572	+	14939118	14944572	cassetteExon	ENSMUST00000027554.8	known	0.00	0.0	25	0;0	25	n	0.00	0.0	41	0;0	41	n	0.04	2.5	65	4;1	65	n	0.00	0.0	35	0;0	35	n	0.02	1.0	40	1;1	40	n	0.02	0.5	26	1;0	26	n	0.03	1.0	32	1;1	32	n	0.00	0.0	16	0;0	16	n	0.07	1.5	20	3;0	20	n	0.07	2.0	28	1;3	28	n	0.08	2.0	22	2;2	22	y	0.06	1.0	16	0;2	16	n	0.000814495615579615	-7	down	0.00524393749754293	-5.55492059863531	down	ENSMUSG00000026317.8	Cln8	chr8	protein_coding	CLN8 transmembrane ER and ERGIC protein
known_NIR_18950	chr8	71212113;71212899	71212739;71213014	-	71212113	71213014	cassetteExon	ENSMUST00000038626.10	known	0.06	4.0	61	6;2	61	y	0.06	3.5	60	2;5	60	y	0.09	4.0	40	2;6	40	y	0.04	2.5	59	2;3	59	y	0.06	4.5	65	8;1	65	n	0.08	2.5	30	2;3	30	y	0.03	2.0	74	1;3	74	n	0.07	2.5	32	2;3	32	y	0.11	6.0	50	6;6	50	y	0.10	9.5	84	7;12	84	y	0.11	6.5	53	5;8	53	y	0.09	5.5	58	5;6	58	y	0.0215663395477411	-3.59726264087885	down	0.0222560662076203	-3.51953076051248	down	ENSMUSG00000035559.10	Mpv17l2	chr8	protein_coding	MPV17 mitochondrial membrane protein-like 2
known_NIR_19044	chr8	80008283	80010838	-	80008283	80021543	A5SS	ENSMUST00000048718.4	known	0.77	27	8	27	8	y	0.78	21	6	21	6	y	0.65	17	9	17	9	y	0.74	37	13	37	13	y	0.73	33	12	33	12	y	0.70	7	3	7	3	y	0.79	23	6	23	6	y	0.78	14	4	14	4	y	0.89	17	2	17	2	y	0.76	37	12	37	12	y	0.84	36	7	36	7	y	0.90	45	5	45	5	y	0.0499400002544366	-2.54047852134149	down	0.041866576647166	-2.58234315265575	down	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
known_NIR_19909	chr9	34966945	35010195	-	34966945	35027994	A5SS	ENSMUST00000034537.8	known	0.01	2	145	2	145	y	0.00	0	96	0	96	n	0.00	0	119	0	119	n	0.00	0	89	0	89	n	0.00	0	252	0	252	n	0.00	0	78	0	78	n	0.01	1	178	1	178	n	0.01	1	83	1	83	n	0.02	3	122	3	122	y	0.02	4	180	4	180	y	0.03	3	102	3	102	y	0.01	2	134	2	134	y	0.0273393097919095	-3	down	0.0148041432566231	-3.65563077506966	down	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19910	chr9	34966945	35010195	-	34966945	35030299	A5SS	ENSMUST00000213526.2	known	0.04	2	45	2	45	y	0.00	0	70	0	70	n	0.00	0	61	0	61	n	0.00	0	66	0	66	n	0.00	0	105	0	105	n	0.00	0	78	0	78	n	0.01	1	80	1	80	n	0.02	1	63	1	63	n	0.04	3	67	3	67	y	0.06	4	60	4	60	y	0.10	3	27	3	27	y	0.04	2	45	2	45	y	0.0281254951539046	-3.51631710477147	down	0.0313774679281493	-2.88675134594813	down	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19951	chr9	42173427	42175418	-	42173427	42175502	A5SS	ENSMUST00000052725.15	known	0.09	21	201	21	201	y	0.09	9	91	9	91	y	0.05	14	278	14	278	y	0.11	31	242	31	242	y	0.11	44	362	44	362	y	0.04	7	165	7	165	y	0.12	37	272	37	272	y	0.04	8	198	8	198	y	0.16	52	264	52	264	y	0.13	61	407	61	407	y	0.17	59	294	59	294	y	0.13	62	418	62	418	y	0.0402612278227381	-2.90868211647066	down	0.00918014195762762	-3.8423663968392	down	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
known_NIR_20460	chr9	89095309	89097262	+	89093534	89097262	A5SS	ENSMUST00000118887.8	known	0.03	1	35	1	35	n	0.08	3	35	3	35	y	0.02	1	48	1	48	n	0.09	4	41	4	41	y	0.00	0	62	0	62	n	0.06	1	17	1	17	n	0.03	2	57	2	57	y	0.06	2	29	2	29	y	0.14	6	38	6	38	y	0.15	8	47	8	47	y	0.11	4	33	4	33	y	0.11	4	32	4	32	y	0.00297902511896371	-5.09116882454314	down	0.0170680799546916	-3.56067296445475	down	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20742	chrX	20826258	20827874	-	20826258	20827919	A5SS	ENSMUST00000129899.8	known	0.03	3	110	3	110	y	0.03	4	131	4	131	y	0.05	9	163	9	163	y	0.04	6	135	6	135	y	0.03	5	172	5	172	y	0.03	3	101	3	101	y	0.04	6	154	6	154	y	0.02	2	102	2	102	y	0.07	7	94	7	94	y	0.05	9	167	9	167	y	0.09	11	114	11	114	y	0.07	11	143	11	143	y	0.00951608277659585	-4.38178046004133	down	0.0195150653843224	-3.43375853466993	down	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
known_NIR_20912	chrX	73332320;73332625	73332535;73332711	+	73332320	73332711	cassetteExon	ENSMUST00000069722.13	known	0.10	2.0	19	0;4	19	n	0.11	2.5	20	0;5	20	n	0.05	1.0	21	0;2	21	n	0.15	4.0	22	0;8	22	n	0.19	7.0	29	0;14	29	n	0.22	2.5	9	0;5	9	n	0.18	11.5	52	0;23	52	n	0.14	3.0	19	0;6	19	n	0.29	8.0	20	1;15	20	n	0.19	7.0	30	0;14	30	n	0.30	9.0	21	0;18	21	n	0.33	10.5	21	2;19	21	y	0.0439086240726467	-2.74718734845771	down	0.00436386175805	-4.77026392945467	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_21031	chrX	93411091	93423532	+	93410932	93423532	A5SS	ENSMUST00000113896.8	known	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.00890431761529044	-6.08697152544446	down	0.0115679929609971	-3.58540882341951	down	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
novel_NIR_447	chr1	163977213	163979008	-	163977213	163979428	A5SS	ENSMUST00000133341.3	novel	0.21	9	33	9	33	y	0.20	9	37	9	37	y	0.00	0	38	0	38	n	0.26	10	28	10	28	y	0.31	17	37	17	37	y	0.27	6	16	6	16	y	0.21	11	41	11	41	y	0.33	14	29	14	29	y	0.44	24	30	24	30	y	0.42	23	32	23	32	y	0.32	19	41	19	41	y	0.42	25	34	25	34	y	0.019342178246574	-3.16962326277225	down	0.019124174469725	-3.66566218213814	down	ENSMUSG00000086593.3	Gm16548	chr1	lncRNA	predicted gene 16548
novel_NIR_972	chr1	60511025	60532697	-	60529480	60532697	3pMXE	ENSMUST00000140485.8	novel	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.00	0	91	0	91	n	0.08	1	12	1	12	n	0.07	3	38	3	38	n	0.00	0	38	0	38	n	0.12	2	15	2	15	n	0.00	0	25	0	25	n	0.18	2	9	2	9	y	0.08	2	24	2	24	n	0.18	2	9	2	9	y	0.15	4	23	4	23	y	0.0391189106934572	-2.66076042095096	down	0.0118374905737804	-3.5913909801043	down	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_1425	chr10	111444612;111446678	111446432;111446900	+	111444612	111446900	cassetteExon	ENSMUST00000219137.2	novel	0.21	18.0	66	17;19	66	y	0.25	21.0	63	23;19	63	y	0.12	12.0	86	11;13	86	n	0.27	29.5	78	27;32	78	y	0.15	21.0	122	22;20	122	y	0.09	7.5	73	10;5	73	n	0.15	17.0	99	14;20	99	y	0.12	10.5	80	18;3	80	n	0.37	28.0	47	20;36	47	y	0.32	41.5	88	42;41	88	y	0.40	38.5	57	40;37	57	y	0.32	36.5	77	33;40	77	y	0.000153468639778925	-9.21764801698541	down	0.0158773422159266	-3.619815474144	down	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1775	chr10	4636956	4662313	+	4660294	4662313	5pMXE	ENSMUST00000105588.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.44	4	5	4	5	y	0.0109718440560266	-4.36759707713774	down	0.00100851395444787	-12.8869839405293	down	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1831	chr10	61532521	61534028	+	61532521	61535222	A3SS	ENSMUST00000219768.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00681917041332744	-5.22617549307942	down	0.0199662583148904	-3.20075278442909	down	ENSMUSG00000020087.6	Tysnd1	chr10	protein_coding	trypsin domain containing 1
novel_NIR_3313	chr11	6216967	6217418	-	6216917	6217418	A3SS	ENSMUST00000151446.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.83	5	1	5	1	y	0.0168135637860991	-3.94860298993788	down	0.0458671856677077	-3.06350430945413	down	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
novel_NIR_4554	chr12	76624050	76624453	+	76624050	76624449	A3SS	ENSMUST00000075249.6	novel	0.02	1	44	1	44	n	0.09	3	32	3	32	n	0.03	1	33	1	33	n	0.00	0	40	0	40	n	0.05	3	56	3	56	n	0.04	1	26	1	26	n	0.06	4	59	4	59	n	0.00	0	42	0	42	n	0.11	4	34	4	34	n	0.07	4	52	4	52	n	0.16	7	38	7	38	y	0.11	7	54	7	54	n	0.0187396052506349	-3.3129457822454	down	0.0274405712410024	-2.89918054170676	down	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
novel_NIR_5239	chr13	63023125	63027195	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.70	16	7	16	7	y	0.60	6	4	6	4	y	0.60	12	8	12	8	y	0.50	6	6	6	6	y	0.79	11	3	11	3	y	0.67	4	2	4	2	y	1.00	2	0	2	0	y	0.80	20	5	20	5	n	0.83	5	1	5	1	y	0.78	14	4	14	4	y	0.0373464159511324	-2.6901787616469	down	0.00864219454863616	-3.9010001395172	down	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5246	chr13	63023125;63027445	63027195;63035465	-	63023125	63035465	cassetteExon	ENSMUST00000134814.2	novel	0.43	1.5	2	3;0	2	n	0.33	1.0	2	2;0	2	n	0.53	8.0	7	16;0	7	n	0.43	3.0	4	6;0	4	n	0.43	6.0	8	12;0	8	n	0.33	3.0	6	6;0	6	n	0.65	5.5	3	11;0	3	n	0.50	2.0	2	4;0	2	n	1.00	1.0	0	2;0	0	n	0.69	11.0	5	20;2	5	y	0.71	2.5	1	5;0	1	n	0.64	7.0	4	14;0	4	n	0.0379682731454563	-2.67660311340123	down	0.0187208652091956	-3.62586283355098	down	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5348	chr13	73476836	73478979	+	73476739	73478979	A5SS	ENSMUST00000221730.2	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.0158076179028352	-4.95164740731644	down	0.0257123770829802	-3.13967449270529	down	ENSMUSG00000021607.10	Mrpl36	chr13	protein_coding	mitochondrial ribosomal protein L36
novel_NIR_5354	chr13	73912009	73912264	+	73912009	73932638	A3SS	ENSMUST00000017900.9	novel	0.07	3	37	3	37	n	0.12	3	23	3	23	n	0.00	0	33	0	33	n	0.04	2	54	2	54	n	0.18	11	50	11	50	y	0.00	0	13	0	13	n	0.12	6	42	6	42	n	0.00	0	29	0	29	n	0.33	13	26	13	26	y	0.27	20	53	20	53	y	0.18	6	27	6	27	y	0.23	9	30	9	30	y	0.0209890065565354	-3.22394392522415	down	0.00339823068271858	-4.8066409756039	down	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
novel_NIR_6301	chr14	75368644	75414255	+	75368644	75435517	A3SS	ENSMUST00000143539.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.38	3	5	3	5	y	0.00747674039516293	-11.5	down	0.00601253957392704	-5.81488890911977	down	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6766	chr15	7183766	7183868	+	7159307	7183868	A5SS	ENSMUST00000067190.12	novel	0.00	0	35	0	35	n	0.06	2	31	2	31	n	0.00	0	36	0	36	n	0.06	4	67	4	67	n	0.03	3	93	3	93	n	0.00	0	25	0	25	n	0.02	1	54	1	54	n	0.11	4	31	4	31	n	0.17	11	54	11	54	n	0.12	13	100	13	100	n	0.17	13	64	13	64	y	0.13	14	94	14	94	n	0.0131060631028242	-3.90909090909091	down	0.00206967555567211	-5.4031317399374	down	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_7344	chr16	17199753	17207205	-	17199753;17204193	17204100;17207205	ES	ENSMUST00000036161.12	novel	0.06	1	17.0	1	17;17	n	0.00	0	14.0	0	19;9	n	0.00	0	25.0	0	17;33	n	0.00	0	18.5	0	25;12	n	0.09	3	29.0	3	31;27	n	0.00	0	9.5	0	11;8	n	0.00	0	21.5	0	24;19	n	0.00	0	13.0	0	13;13	n	0.11	2	15.5	2	14;17	n	0.15	4	23.0	4	20;26	y	0.11	1	8.5	1	10;7	n	0.04	1	24.5	1	22;27	n	0.0469358471573462	-2.49371680063743	down	0.0228541364699423	-3.19949508551403	down	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
novel_NIR_7465	chr16	22739138	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	novel	0.53	8	7	8	7	y	0.56	9	7	9	7	y	0.38	11	18	11	18	y	0.33	3	6	3	6	y	0.38	8	13	8	13	y	0.00	0	13	0	13	n	0.38	3	5	3	5	y	0.22	4	14	4	14	y	0.54	13	11	13	11	y	0.59	16	11	16	11	y	0.65	13	7	13	7	y	0.79	19	5	19	5	y	0.0131948647393485	-3.78750396779115	down	0.0485002767186999	-2.47019974748052	down	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7467	chr16	22739138	22747825	+	22740625	22747825	A5SS&ES	ENSMUST00000232097.2	novel	0.14	8	49	8	49	n	0.13	9	60	9	60	n	0.16	11	57	11	57	y	0.06	3	48	3	48	n	0.14	8	49	8	49	n	0.00	0	32	0	32	n	0.04	3	65	3	65	n	0.09	4	43	4	43	n	0.19	13	56	13	56	y	0.18	16	75	16	75	y	0.23	13	44	13	44	y	0.20	19	74	19	74	y	0.0168346386188254	-4.10947387765176	down	0.0290322809589164	-3.1917517372038	down	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_9133	chr18	20999263	21000874	-	20999263	21000817	A5SS	ENSMUST00000225661.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.0297024972758426	-2.88894650723368	down	0.0213541639876143	-4.43129367525598	down	ENSMUSG00000033382.16	Trappc8	chr18	protein_coding	trafficking protein particle complex 8
novel_NIR_9618	chr19	10183182	10183788	+	10183488	10183788	A5SS	ENSMUST00000153854.8	novel	0.60	6	4	6	4	y	0.45	5	6	5	6	y	0.42	5	7	5	7	y	0.50	1	1	1	1	n	0.20	2	8	2	8	y	0.42	5	7	5	7	y	0.50	5	5	5	5	y	0.36	4	7	4	7	y	1.00	2	0	2	0	y	0.85	11	2	11	2	y	1.00	3	0	3	0	y	0.55	6	5	6	5	y	0.0120438927200907	-3.8826853291661	down	0.0365450810222936	-3.15911225491293	down	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
novel_NIR_9950	chr19	4209459	4211063	-	4209459	4209565	A5SS&ES	ENSMUST00000130469.8	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00598625569770709	-7	down	0.00542395034130874	-4.24264068711928	down	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_10037	chr19	46626135	46632792	+	46612018	46632792	A5SS	ENSMUST00000111855.5	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.0300351571802689	-4.25896785104134	down	0.0377495513506237	-5	down	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10182	chr19	58443026	58443134	-	58443026	58443630	A5SS	ENSMUST00000026076.14	novel	0.10	5	44	5	44	n	0.03	1	28	1	28	n	0.13	13	86	13	86	n	0.12	13	98	13	98	n	0.02	2	80	2	80	n	0.00	0	55	0	55	n	0.18	10	46	10	46	y	0.09	4	40	4	40	n	0.30	9	21	9	21	y	0.19	13	54	13	54	y	0.24	6	19	6	19	y	0.15	8	47	8	47	y	0.0313926465911935	-2.83535905486006	down	0.0226751068667501	-3.16650248190562	down	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10184	chr19	58443026	58443134	-	58443026	58443893	A5SS	ENSMUST00000131877.2	novel	0.21	5	19	5	19	y	0.07	1	13	1	13	n	0.23	13	43	13	43	y	0.31	13	29	13	29	y	0.04	2	44	2	44	n	0.00	0	20	0	20	n	0.26	10	29	10	29	y	0.09	4	42	4	42	n	0.64	9	5	9	5	y	0.52	13	12	13	12	y	0.43	6	8	6	8	y	0.31	8	18	8	18	y	0.00630426785652958	-4.18209281117217	down	0.0227818968686621	-3.1457793313915	down	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_11066	chr2	180333841	180342859	-	180333841	180343754	A5SS	ENSMUST00000087517.10	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.16	3	16	3	16	y	0.07	1	14	1	14	n	0.14	2	12	2	12	n	0.06	1	17	1	17	n	0.0230376339197881	-4.30718463324745	down	0.0230376339197881	-4.30718463324745	down	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11067	chr2	180333841	180342859	-	180333841	180351703	A5SS	ENSMUST00000103057.8	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.0398107534200715	-3.48847115952861	down	0.0398107534200715	-3.48847115952861	down	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11867	chr2	90982909	90982997	-	90982909	90984780	A5SS	ENSMUST00000111373.8	novel	0.00	0	22	0	22	n	0.11	2	17	2	17	n	0.00	0	20	0	20	n	0.23	6	20	6	20	y	0.22	5	18	5	18	y	0.00	0	10	0	10	n	0.11	2	16	2	16	n	0.15	2	11	2	11	y	0.25	3	9	3	9	y	0.29	9	22	9	22	y	0.27	4	11	4	11	y	0.25	3	9	3	9	y	0.0482827320899909	-3.0855720242738	down	0.0442439996835181	-3.23289543648195	down	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_12024	chr3	107951744	107952196	-	107951744	107952126	5pMXE	ENSMUST00000106670.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00598625569770709	-7	down	0.00598625569770709	-7	down	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12025	chr3	107951744	107952196	-	107951744	107952161	5pMXE	ENSMUST00000178808.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00598625569770709	-7	down	0.00598625569770709	-7	down	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12642	chr3	88323417	88327808	-	88323422	88327808	A3SS	ENSMUST00000193433.6	novel	0.00	0	63	0	63	n	0.00	0	41	0	41	n	0.07	5	63	5	63	n	0.00	0	92	0	92	n	0.06	7	106	7	106	n	0.03	1	39	1	39	n	0.00	0	105	0	105	n	0.07	5	62	5	62	n	0.11	11	92	11	92	n	0.11	12	94	12	94	n	0.20	20	78	20	78	y	0.15	17	97	17	97	y	0.00982528069864807	-3.85695556037275	down	0.00438296814115378	-4.52678730212593	down	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
novel_NIR_13361	chr4	134260063	134262500	-	134260063	134262216	5pMXE	ENSMUST00000154769.8	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.44	4	5	4	5	y	0.50	2	2	2	2	y	0.43	3	4	3	4	y	0.000992054736187143	-6.1227235408363	down	0.00172009482103113	-5.51839518537726	down	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
novel_NIR_13453	chr4	140846092	140862130	-	140846092	140867003	A5SS	ENSMUST00000094549.11	novel	0.03	1	32	1	32	n	0.07	3	38	3	38	n	0.00	0	56	0	56	n	0.07	3	42	3	42	n	0.02	1	61	1	61	n	0.00	0	27	0	27	n	0.03	1	38	1	38	n	0.03	1	36	1	36	n	0.17	5	24	5	24	y	0.09	6	58	6	58	n	0.14	7	44	7	44	n	0.14	8	49	8	49	n	0.00295464995926004	-6.37905225659013	down	0.00805985720184409	-3.89293996226701	down	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13454	chr4	140847684	140862130	-	140847684	140867003	A5SS	ENSMUST00000148204.8	novel	0.30	16	37	16	37	y	0.18	8	36	8	36	y	0.00	0	31	0	31	n	0.28	25	64	25	64	y	0.17	15	73	15	73	y	0.00	0	31	0	31	n	0.20	17	67	17	67	y	0.03	1	37	1	37	n	0.36	21	37	21	37	y	0.42	46	64	46	64	y	0.32	33	70	33	70	y	0.55	51	42	51	42	y	0.00448773052407683	-4.41665783335983	down	0.0430723954644237	-2.6180245405558	down	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13482	chr4	144619945	144620152	+	144619945	144620155	A3SS	ENSMUST00000142808.8	novel	0.00	0	20	0	20	n	0.13	2	13	2	13	n	0.00	0	3	0	3	n	0.05	1	19	1	19	n	0.13	3	20	3	20	n	0.00	0	3	0	3	n	0.08	2	23	2	23	n	0.00	0	5	0	5	n	0.14	3	18	3	18	n	0.19	4	17	4	17	y	0.29	9	22	9	22	y	0.14	4	25	4	25	n	0.0282232999913969	-2.88410416396454	down	0.0217375162071626	-3.09728201711373	down	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13639	chr4	155846716	155847827	+	155845743	155847827	A5SS	ENSMUST00000155010.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.62	5	3	5	3	y	0.0193457923295135	-7.08489311533802	down	0.0193457923295135	-7.08489311533802	down	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_15270	chr5	73493275	73495874	-	73489543	73495874	A3SS	ENSMUST00000200830.4	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.17	1	5	1	5	n	0.55	6	5	6	5	y	0.0412166296624606	-3.44064356901643	down	0.0412166296624606	-3.44064356901643	down	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
novel_NIR_15476	chr6	113247662	113254756	+	113247662	113254792	A3SS	ENSMUST00000151149.2	novel	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.0138189706904542	-8.41829962611461	down	0.00245318680015085	-9.52631578947368	down	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
novel_NIR_15529	chr6	116261776	116264943	+	116263573	116264943	5pMXE	ENSMUST00000221069.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.0387968213685622	-4.92800147686227	down	0.0387968213685622	-4.92800147686227	down	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15791	chr6	133083546	133084827	+	133082568	133084827	A5SS	ENSMUST00000191462.2	novel	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.15	6	33	6	33	y	0.07	3	40	3	40	n	0.00	0	12	0	12	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.32	8	17	8	17	y	0.34	22	42	22	42	y	0.22	10	36	10	36	y	0.21	10	37	10	37	y	0.00159999210211421	-6.7452607269143	down	0.00353442197173363	-4.67282092040782	down	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_17839	chr7	44796917	44797149	-	44796945	44797149	A3SS	ENSMUST00000211362.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.56	5	4	5	4	y	0.037743146268843	-3.12213740458015	down	0.0430318180086551	-4.07113492710878	down	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
novel_NIR_18433	chr8	105783163	105783990	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.02	1	40	1	40	n	0.00	0	29	0	29	n	0.00	0	1	0	1	n	0.05	2	41	2	41	n	0.00	0	44	0	44	n	-	-	-	-	-	-	0.04	2	52	2	52	n	0.00	0	6	0	6	n	0.18	9	42	9	42	y	0.17	11	52	11	52	y	0.22	11	40	11	40	y	0.18	7	32	7	32	y	0.000363573139591121	-10.0438990248432	down	4.51615286730957e-05	-10.4926277974222	down	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18459	chr8	106055090	106055222	+	106055090	106055404	A3SS	ENSMUST00000109372.3	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.35	6	11	6	11	n	0.75	3	1	3	1	n	0.67	4	2	4	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.30	3	7	3	7	y	0.75	3	1	3	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	y	0.90	9	1	9	1	y	0.0174804594705149	-3.66311003041305	down	0.0317284652613051	-3.38997047962436	down	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18461	chr8	106055090;106055279	106055222;106055404	+	106055090	106055404	cassetteExon	ENSMUST00000109372.3	novel	0.27	1.5	4	0;3	4	n	0.00	0.0	2	0;0	2	n	0.31	5.0	11	6;4	11	y	0.67	2.0	1	3;1	1	n	0.64	3.5	2	4;3	2	y	0.11	1.0	8	2;0	8	n	0.56	2.5	2	3;2	2	y	0.18	1.5	7	3;0	7	n	0.67	2.0	1	3;1	1	n	1.00	8.0	0	12;4	0	y	1.00	4.0	0	8;0	0	n	0.82	4.5	1	9;0	1	n	0.0240465980314837	-3.22217614410683	down	0.0180222232796485	-3.5209797830781	down	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_19225	chr8	71216524	71216721	-	71216524	71217192	A5SS	ENSMUST00000222087.4	novel	0.35	39	74	39	74	y	0.21	20	77	20	77	y	0.05	5	86	5	86	n	0.59	44	31	44	31	y	0.37	52	88	52	88	y	0.20	14	56	14	56	y	0.37	51	86	51	86	y	0.38	21	35	21	35	y	0.62	53	33	53	33	y	0.77	88	26	88	26	y	0.60	55	37	55	37	y	0.71	53	22	53	22	y	0.00111592151361792	-5.86658908309415	down	0.0402321179307718	-3.09558128779874	down	ENSMUSG00000031838.11	Ifi30	chr8	protein_coding	interferon gamma inducible protein 30
novel_NIR_19401	chr8	86750967	86751827	+	86750967	86753086	A3SS	ENSMUST00000053771.14	novel	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.30	6	14	6	14	n	0.13	4	26	4	26	n	0.00	0	14	0	14	n	0.22	6	21	6	21	n	0.16	3	16	3	16	y	0.50	6	6	6	6	y	0.27	6	16	6	16	y	0.43	3	4	3	4	y	0.38	8	13	8	13	y	0.00723728186192916	-3.98857794869327	down	0.0207994860250112	-3.26248217491689	down	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19944	chr9	124201170	124201277	+	124201025	124201277	A5SS	ENSMUST00000216394.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.40	4	6	4	6	y	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.50	3	3	3	3	y	1.00	6	0	6	0	y	0.0295102519455809	-3.1846690864247	down	0.00482674138255483	-5.23267241755258	down	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_20673	chr9	77834679	77864423	+	77829303	77864423	A5SS	ENSMUST00000133757.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0377495513506237	-5	down	0.0276637430286762	-4.03743700537085	down	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
