X.ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLP_1.Ratio	CLP_1.Alt_average_sj	CLP_1.Model_average_sj	CLP_1.Alt_sj	CLP_1.Model_sj	CLP_1.isfiltered	CLP_2.Ratio	CLP_2.Alt_average_sj	CLP_2.Model_average_sj	CLP_2.Alt_sj	CLP_2.Model_sj	CLP_2.isfiltered	CLP_3.Ratio	CLP_3.Alt_average_sj	CLP_3.Model_average_sj	CLP_3.Alt_sj	CLP_3.Model_sj	CLP_3.isfiltered	CLP_4.Ratio	CLP_4.Alt_average_sj	CLP_4.Model_average_sj	CLP_4.Alt_sj	CLP_4.Model_sj	CLP_4.isfiltered	Sham_1.Ratio	Sham_1.Alt_average_sj	Sham_1.Model_average_sj	Sham_1.Alt_sj	Sham_1.Model_sj	Sham_1.isfiltered	Sham_2.Ratio	Sham_2.Alt_average_sj	Sham_2.Model_average_sj	Sham_2.Alt_sj	Sham_2.Model_sj	Sham_2.isfiltered	Sham_3.Ratio	Sham_3.Alt_average_sj	Sham_3.Model_average_sj	Sham_3.Alt_sj	Sham_3.Model_sj	Sham_3.isfiltered	Sham_4.Ratio	Sham_4.Alt_average_sj	Sham_4.Model_average_sj	Sham_4.Alt_sj	Sham_4.Model_sj	Sham_4.isfiltered	Pvalue	Tvalue	DiffType	Gene	Symbol	Chr	GeneType	Description
known_NIR_20	chr1	105592358	105592699	+	105592358	105605888	A3SS	ENSMUST00000186807.7	known	0.24	4	13	4	13	y	0.00	0	5	0	5	n	0.10	1	9	1	9	n	0.17	2	10	2	10	y	0.41	7	10	7	10	y	0.43	3	4	3	4	n	0.27	4	11	4	11	y	0.18	2	9	2	9	y	0.0481772129180475	-2.4873919361588	down	ENSMUSG00000026319.14	Relch	chr1	protein_coding	RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
known_NIR_50	chr1	121234692;121247701	121247326;121255420	-	121234692;121240054	121234869;121255420	MXE	ENSMUST00000186915.2	known	0.07	20.0	269.5	2;38	539;0	n	0.04	13.5	345.0	10;17	690;0	n	0.07	26.0	351.0	5;47	702;0	n	0.05	12.5	227.5	0;25	455;0	n	0.08	12.0	145.0	0;24	290;0	n	0.14	26.5	168.5	2;51	337;0	n	0.09	16.5	164.5	0;33	328;1	n	0.10	21.0	179.0	5;37	357;1	n	0.0329715308909293	-2.97260216584117	down	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_59	chr1	121247701	121255295	-	121247701	121260221	A5SS	ENSMUST00000071064.13	known	0.12	14	99	14	99	y	0.05	9	188	9	188	y	0.13	23	155	23	155	y	0.12	15	106	15	106	y	0.16	11	57	11	57	y	0.33	20	40	20	40	y	0.27	15	40	15	40	y	0.31	18	41	18	41	y	0.0156443976694709	-3.8502677054341	down	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_60	chr1	121247701	121260221	-	121247701	121255420	5pMXE	ENSMUST00000003818.14	known	0.72	99	38	99	38	y	0.92	188	17	188	17	y	0.77	155	47	155	47	y	0.81	106	25	106	25	y	0.70	57	24	57	24	y	0.44	40	51	40	51	y	0.55	40	33	40	33	y	0.53	41	37	41	37	y	0.011883217115366	3.64017628587218	up	ENSMUSG00000003721.15	Insig2	chr1	protein_coding	insulin induced gene 2
known_NIR_75	chr1	130566970	130570710	-	130566970	130570671	A5SS	ENSMUST00000027657.14	known	0.05	225	4562	225	4562	y	0.05	142	2820	142	2820	y	0.04	163	3554	163	3554	y	0.04	129	2978	129	2978	y	0.03	62	1879	62	1879	y	0.03	99	3073	99	3073	y	0.03	64	1962	64	1962	y	0.03	73	2638	73	2638	y	0.0138468329888591	5.19615242270663	up	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
known_NIR_76	chr1	130585051;130585216	130585200;130589185	-	130585051	130589185	cassetteExon	ENSMUST00000027657.14	known	0.04	162.5	4041	211;114	4041	y	0.03	83.5	2386	115;52	2386	y	0.04	106.0	2772	140;72	2772	y	0.04	109.0	2865	135;83	2865	y	0.03	52.0	1529	62;42	1529	y	0.02	57.5	2634	79;36	2634	y	0.03	45.0	1367	55;35	1367	y	0.03	74.5	2189	95;54	2189	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
known_NIR_94	chr1	131109991	131139994	-	131109991	131127590	5pMXE	ENSMUST00000068564.15	known	0.82	9	2	9	2	y	0.67	2	1	2	1	n	0.82	9	2	9	2	y	0.62	5	3	5	3	n	1.00	8	0	8	0	n	0.87	13	2	13	2	y	0.85	11	2	11	2	y	1.00	11	0	11	0	n	0.0253207945109978	-3.00966030514986	down	ENSMUSG00000026430.17	Rassf5	chr1	protein_coding	Ras association (RalGDS/AF-6) domain family member 5
known_NIR_95	chr1	131135461	131139994	-	131109991	131139994	A3SS	ENSMUST00000027688.15	known	0.10	1	9	1	9	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.00	0	5	0	5	n	0.20	2	8	2	8	y	0.28	5	13	5	13	y	0.15	2	11	2	11	y	0.15	2	11	2	11	y	0.0138540174438255	-3.44166680876217	down	ENSMUSG00000026430.17	Rassf5	chr1	protein_coding	Ras association (RalGDS/AF-6) domain family member 5
known_NIR_124	chr1	133202112	133202531	+	133202112	133209521	A3SS	ENSMUST00000189598.2	known	0.41	9	13	9	13	y	0.40	2	3	2	3	n	0.47	8	9	8	9	y	0.60	6	4	6	4	y	0.33	5	10	5	10	y	0.42	8	11	8	11	y	0.25	2	6	2	6	n	0.23	3	10	3	10	y	0.0423224579561895	2.57270265588808	up	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_169	chr1	136202638	136204276	-	136202611	136204276	A3SS	ENSMUST00000048309.12	known	0.04	1	27	1	27	n	0.05	1	19	1	19	n	0.00	0	20	0	20	n	0.06	1	17	1	17	n	0.11	2	17	2	17	y	0.08	2	24	2	24	y	0.10	1	9	1	9	n	0.05	1	19	1	19	n	0.0436933819042273	-2.54657219416999	down	ENSMUSG00000041570.15	Camsap2	chr1	protein_coding	calmodulin regulated spectrin-associated protein family, member 2
known_NIR_197	chr1	143615422	143617386	+	143615496	143617386	A5SS	ENSMUST00000126514.2	known	0.15	14	77	14	77	y	0.15	6	33	6	33	y	0.15	10	58	10	58	y	0.24	11	35	11	35	y	0.05	2	41	2	41	y	0.07	5	66	5	66	y	0.03	2	68	2	68	y	0.03	2	77	2	77	y	0.00622787624346405	5.21422605092113	up	ENSMUSG00000018196.19	Glrx2	chr1	protein_coding	glutaredoxin 2 (thioltransferase)
known_NIR_221	chr1	152644684	152650011	+	152644684;152647291	152647115;152650011	ES	ENSMUST00000077755.11	known	0.00	0	254.0	0	221;287	n	0.01	2	136.5	2	120;153	y	0.01	2	210.5	2	182;239	y	0.00	0	144.5	0	131;158	n	0.02	3	125.0	3	104;146	y	0.01	2	237.5	2	204;271	y	0.01	1	166.5	1	143;190	n	0.02	5	205.5	5	170;241	y	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000008475.14	Arpc5	chr1	protein_coding	actin related protein 2/3 complex, subunit 5
known_NIR_224	chr1	152722014	152724485	-	152722014	152724347	A5SS	ENSMUST00000073441.13	known	0.84	42	8	42	8	y	0.83	24	5	24	5	y	0.76	22	7	22	7	y	0.85	23	4	23	4	y	0.92	24	2	24	2	y	0.89	34	4	34	4	y	0.96	26	1	26	1	n	0.89	33	4	33	4	y	0.0120235227996796	-3.61222822798953	down	ENSMUSG00000042772.16	Smg7	chr1	protein_coding	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
known_NIR_279	chr1	160862289	160863322	+	160862027	160863322	A5SS	ENSMUST00000160152.8	known	0.86	6	1	6	1	n	1.00	4	0	4	0	n	0.88	7	1	7	1	n	1.00	7	0	7	0	n	0.29	2	5	2	5	n	0.50	5	5	5	5	y	0.33	2	4	2	4	n	0.80	4	1	4	1	n	0.0241168265435974	3.73063628069309	up	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
known_NIR_319	chr1	162501225	162504260	-	162501225;162501720	162501668;162504260	ES	ENSMUST00000182149.8	known	0.31	14	30.5	14	28;33	y	0.23	5	17.0	5	13;21	y	0.36	16	29.0	16	38;20	y	0.42	9	12.5	9	13;12	y	0.27	10	26.5	10	24;29	y	0.14	5	31.0	5	28;34	y	0.16	5	25.5	5	20;31	y	0.22	10	35.0	10	36;34	y	0.0410037885952887	2.6555381460616	up	ENSMUSG00000040225.16	Prrc2c	chr1	protein_coding	proline-rich coiled-coil 2C
known_NIR_395	chr1	170027582	170034683	-	170027582;170032772	170032684;170034683	ES	ENSMUST00000150821.8	known	0.02	1	53.5	1	56;51	n	0.00	0	28.0	0	31;25	n	0.00	0	39.0	0	41;37	n	0.03	1	30.0	1	33;27	n	0.05	1	20.0	1	19;21	n	0.09	4	38.5	4	45;32	y	0.06	1	16.5	1	21;12	n	0.09	4	42.0	4	45;39	y	0.00418573061200276	-4.70678724331642	down	ENSMUSG00000026667.15	Uhmk1	chr1	protein_coding	U2AF homology motif (UHM) kinase 1
known_NIR_432	chr1	171157094	171165820	+	171157094;171158853	171158802;171165820	ES	ENSMUST00000111299.8	known	0.56	29	22.5	29	1;44	n	0.60	13	8.5	13	0;17	n	0.60	28	19.0	28	0;38	n	0.70	23	10.0	23	0;20	n	0.46	15	17.5	15	0;35	n	0.36	16	29.0	16	1;57	n	0.53	17	15.0	17	2;28	y	0.33	10	20.0	10	1;39	n	0.0155227804097626	3.55526218395717	up	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_433	chr1	171157094	171165820	+	171157094;171158853	171158821;171165820	ES	ENSMUST00000111300.8	known	0.50	29	29.5	29	15;44	y	0.53	13	11.5	13	6;17	y	0.53	28	24.5	28	11;38	y	0.65	23	12.5	23	5;20	y	0.34	15	28.5	15	22;35	y	0.29	16	38.5	16	20;57	y	0.47	17	19.0	17	10;28	y	0.26	10	29.0	10	19;39	y	0.0117142515209091	3.72391761187575	up	ENSMUSG00000013973.13	Dedd	chr1	protein_coding	death effector domain-containing
known_NIR_452	chr1	171938141	171938217	+	171938141	171938244	A3SS	ENSMUST00000135192.8	known	0.01	4	300	4	300	y	0.02	5	234	5	234	y	0.02	4	197	4	197	y	0.02	5	226	5	226	y	0.01	2	162	2	162	y	0.01	2	255	2	255	y	0.00	0	140	0	140	n	0.01	2	236	2	236	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000026553.18	Copa	chr1	protein_coding	coatomer protein complex subunit alpha
known_NIR_484	chr1	177271658	177274655	+	177270161	177274655	A5SS	ENSMUST00000195002.2	known	0.20	4	16	4	16	y	0.33	4	8	4	8	y	0.30	3	7	3	7	y	0.38	6	10	6	10	y	0.10	1	9	1	9	n	0.12	3	22	3	22	y	0.17	2	10	2	10	y	0.27	3	8	3	8	y	0.0428160559711691	2.56160538057942	up	ENSMUSG00000063659.12	Zbtb18	chr1	protein_coding	zinc finger and BTB domain containing 18
known_NIR_555	chr1	185081032;185082078	185082034;185084379	+	185081032	185084379	cassetteExon	ENSMUST00000027916.13	known	0.09	17.0	165	15;19	165	y	0.14	9.5	60	11;8	60	y	0.08	14.5	171	14;15	171	y	0.07	6.5	88	7;6	88	y	0.04	5.5	124	6;5	124	y	0.04	7.5	160	8;7	160	y	0.07	9.0	129	10;8	129	y	0.04	6.0	145	7;5	145	y	0.0470548818342134	2.75198593263602	up	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_559	chr1	185821756	185846461	-	185821756;185832559	185832390;185846461	ES	ENSMUST00000045388.8	known	0.02	1	49.5	1	61;38	n	0.03	1	29.5	1	32;27	n	0.08	4	45.5	4	61;30	y	0.00	0	31.5	0	34;29	n	0.04	2	44.0	2	51;37	y	0.21	12	46.5	12	58;35	y	0.19	8	35.0	8	39;31	y	0.18	9	40.0	9	56;24	y	0.0431680141962206	-2.88902506339383	down	ENSMUSG00000039246.9	Lyplal1	chr1	protein_coding	lysophospholipase-like 1
known_NIR_580	chr1	191308063	191314511	+	191308063	191318636	A3SS	ENSMUST00000194785.2	known	0.93	54	4	54	4	y	0.87	20	3	20	3	y	0.96	23	1	23	1	n	0.93	13	1	13	1	n	1.00	15	0	15	0	n	1.00	43	0	43	0	n	1.00	10	0	10	0	n	1.00	37	0	37	0	n	0.0261486717497017	-4.10605030690164	down	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_582	chr1	191308063	191318636	+	191308063;191315437	191315291;191318636	ES	ENSMUST00000194877.6	known	0.15	4	22.0	4	7;37	y	0.21	3	11.0	3	1;21	n	0.05	1	19.0	1	2;36	n	0.11	1	8.0	1	1;15	n	0.00	0	12.0	0	4;20	n	0.00	0	15.0	0	1;29	n	0.00	0	7.0	0	0;14	n	0.00	0	17.5	0	2;33	n	0.030700384951195	3.86157541760903	up	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_615	chr1	24069609	24069823	-	24069021	24069823	A3SS	ENSMUST00000188712.7	known	0.07	2	27	2	27	y	0.14	3	18	3	18	y	0.00	0	18	0	18	n	0.04	1	27	1	27	n	0.25	4	12	4	12	y	0.21	3	11	3	11	y	0.27	4	11	4	11	y	0.12	4	28	4	28	y	0.015329932356033	-3.3717089216941	down	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_647	chr1	36213211	36213977	-	36213291	36213977	A3SS	ENSMUST00000046875.14	known	0.00	0	162	0	162	n	0.00	0	105	0	105	n	0.01	1	87	1	87	n	0.01	1	108	1	108	n	0.02	1	40	1	40	n	0.06	5	81	5	81	y	0.03	2	57	2	57	y	0.03	2	61	2	61	y	0.0345840183550241	-3.286335345031	down	ENSMUSG00000037470.15	Uggt1	chr1	protein_coding	UDP-glucose glycoprotein glucosyltransferase 1
known_NIR_658	chr1	36463584	36463919	-	36459116	36463919	A3SS	ENSMUST00000192969.6	known	0.92	57	5	57	5	y	1.00	20	0	20	0	n	0.90	53	6	53	6	y	1.00	20	0	20	0	n	0.83	20	4	20	4	y	0.91	51	5	51	5	y	0.87	41	6	41	6	y	0.82	50	11	50	11	y	0.0284289015960128	2.92044037135101	up	ENSMUSG00000001143.14	Lman2l	chr1	protein_coding	lectin, mannose-binding 2-like
known_NIR_679	chr1	37411500	37416659	+	37411500;37413370	37413353;37416659	ES	ENSMUST00000027287.11	known	0.38	9	14.5	9	14;15	y	0.64	8	4.5	8	4;5	y	0.64	14	8.0	14	7;9	y	0.46	9	10.5	9	9;12	y	0.84	8	1.5	8	2;1	n	0.80	18	4.5	18	4;5	y	0.62	5	3.0	5	2;4	y	0.79	23	6.0	23	6;6	y	0.0320574609093406	-2.84619798322697	down	ENSMUSG00000026113.18	Inpp4a	chr1	protein_coding	inositol polyphosphate-4-phosphatase, type I
known_NIR_693	chr1	37469574	37470378	+	37469574	37470374	A3SS	ENSMUST00000027285.13	known	0.12	7	53	7	53	y	0.06	2	33	2	33	y	0.10	6	54	6	54	y	0.08	4	46	4	46	y	0.06	2	31	2	31	y	0.04	3	65	3	65	y	0.00	0	30	0	30	n	0.00	0	55	0	55	n	0.0172726595757374	3.28439249215942	up	ENSMUSG00000026111.16	Unc50	chr1	protein_coding	unc-50 homolog
known_NIR_699	chr1	37929665	37933020	+	37932104	37933020	A5SS&ES	ENSMUST00000160082.3	known	0.16	56	285	56	285	y	0.09	15	154	15	154	y	0.20	54	216	54	216	y	0.16	26	141	26	141	y	0.21	46	174	46	174	y	0.22	69	238	69	238	y	0.21	65	244	65	244	y	0.25	63	192	63	192	y	0.04744011522252	-2.82842712474619	down	ENSMUSG00000026087.12	Mrpl30	chr1	protein_coding	mitochondrial ribosomal protein L30
known_NIR_747	chr1	44197495	44197965	+	44197419	44197965	A5SS	ENSMUST00000027214.4	known	0.32	7	15	7	15	y	0.25	3	9	3	9	y	0.31	4	9	4	9	y	0.24	4	13	4	13	y	0.00	0	8	0	8	n	0.19	4	17	4	17	y	0.15	2	11	2	11	y	0.12	3	22	3	22	y	0.0191644389245709	3.60776055954107	up	ENSMUSG00000026048.17	Ercc5	chr1	protein_coding	excision repair cross-complementing rodent repair deficiency, complementation group 5
known_NIR_748	chr1	45958330	45960316	-	45958160	45960316	A3SS	ENSMUST00000027137.11	known	0.02	3	175	3	175	y	0.00	0	54	0	54	n	0.01	2	145	2	145	y	0.01	1	118	1	118	n	0.02	2	85	2	85	y	0.04	8	218	8	218	y	0.03	3	113	3	113	y	0.04	8	202	8	202	y	0.0121941868183737	-3.57623736407562	down	ENSMUSG00000025993.11	Slc40a1	chr1	protein_coding	solute carrier family 40 (iron-regulated transporter), member 1
known_NIR_776	chr1	52158767	52159071	+	52158782	52159071	A5SS	ENSMUST00000186574.7	known	0.33	13	26	13	26	y	0.33	2	4	2	4	n	0.19	6	25	6	25	y	0.37	7	12	7	12	y	0.20	9	35	9	35	y	0.19	9	39	9	39	y	0.22	6	21	6	21	y	0.09	4	43	4	43	y	0.0411013662009671	2.65361388801511	up	ENSMUSG00000026104.15	Stat1	chr1	protein_coding	signal transducer and activator of transcription 1
known_NIR_820	chr1	58483798	58484491	-	58483798	58484305	A5SS	ENSMUST00000114348.8	known	0.04	1	24	1	24	n	0.06	1	16	1	16	n	0.00	0	30	0	30	n	0.00	0	16	0	16	n	0.19	3	13	3	13	y	0.11	4	34	4	34	y	0.11	3	25	3	25	y	0.21	5	19	5	19	y	0.00864549743323433	-4.29375868399281	down	ENSMUSG00000026035.16	Ppil3	chr1	protein_coding	peptidylprolyl isomerase (cyclophilin)-like 3
known_NIR_830	chr1	58752818	58756419	+	58752818	58765465	A3SS	ENSMUST00000140940.8	known	0.07	6	79	6	79	y	0.04	2	44	2	44	y	0.00	0	49	0	49	n	0.04	2	55	2	55	y	0.08	4	46	4	46	y	0.12	7	53	7	53	y	0.17	5	25	5	25	y	0.08	4	49	4	49	y	0.0313651947649638	-2.91385758707179	down	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_854	chr1	62825460	62854492	+	62851743	62854492	A5SS&ES	ENSMUST00000114157.3	known	0.21	3	11	3	11	y	0.12	1	7	1	7	n	0.13	2	13	2	13	y	0.18	2	9	2	9	y	0.50	2	2	2	2	n	0.71	5	2	5	2	n	0.29	2	5	2	5	n	0.50	1	1	1	1	n	0.0251643575022984	-3.84974191609163	down	ENSMUSG00000025969.16	Nrp2	chr1	protein_coding	neuropilin 2
known_NIR_903	chr1	71636546	71637533	-	71636831	71637533	A3SS	ENSMUST00000187938.7	known	0.55	1898	1551	1898	1551	y	0.52	1126	1024	1126	1024	y	0.59	1736	1192	1736	1192	y	0.51	1208	1160	1208	1160	y	0.62	877	537	877	537	y	0.61	1411	896	1411	896	y	0.59	931	635	931	635	y	0.61	1174	755	1174	755	y	0.0301055323970493	-3.41396725435278	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_904	chr1	71636546	71637533	-	71636906	71637533	A3SS	ENSMUST00000188894.7	known	0.58	1898	1375	1898	1375	y	0.39	1126	1769	1126	1769	y	0.60	1736	1154	1736	1154	y	0.45	1208	1455	1208	1455	y	0.70	877	371	877	371	y	0.66	1411	737	1411	737	y	0.71	931	376	931	376	y	0.70	1174	509	1174	509	y	0.0314192791174076	-3.60983213333917	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_905	chr1	71636546;71636831	71636801;71637533	-	71636546	71637533	cassetteExon	ENSMUST00000188674.7	known	0.29	780.0	1898	9;1551	1898	y	0.32	539.5	1126	55;1024	1126	y	0.26	616.5	1736	41;1192	1736	y	0.33	602.0	1208	44;1160	1208	y	0.24	272.5	877	8;537	877	y	0.25	461.5	1411	27;896	1411	y	0.26	322.0	931	9;635	931	y	0.25	385.5	1174	16;755	1174	y	0.0466166947001749	3.06186217847897	up	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_906	chr1	71636546;71636906	71636801;71637533	-	71636546	71637533	cassetteExon	ENSMUST00000188674.7	known	0.27	692.0	1898	9;1375	1898	y	0.45	912.0	1126	55;1769	1126	y	0.26	597.5	1736	41;1154	1736	y	0.38	749.5	1208	44;1455	1208	y	0.18	189.5	877	8;371	877	y	0.21	382.0	1411	27;737	1411	y	0.17	192.5	931	9;376	931	y	0.18	262.5	1174	16;509	1174	y	0.0401567648701286	3.33635641550392	up	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_907	chr1	71636831	71637533	-	71636906	71637533	A3SS	ENSMUST00000188894.7	known	0.53	1551	1375	1551	1375	y	0.37	1024	1769	1024	1769	y	0.51	1192	1154	1192	1154	y	0.44	1160	1455	1160	1455	y	0.59	537	371	537	371	y	0.55	896	737	896	737	y	0.63	635	376	635	376	y	0.60	755	509	755	509	y	0.0292370343866088	-3.25424005398829	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_908	chr1	71641656	71644129	-	71641656;71643088	71642819;71644129	ES	ENSMUST00000188894.7	known	0.99	3754	27.0	3754	30;24	y	0.98	2634	63.5	2634	70;57	y	0.99	2467	19.5	2467	27;12	y	0.99	2664	32.0	2664	41;23	y	1.00	1141	3.5	1141	4;3	y	1.00	1955	6.5	1955	7;6	y	1.00	1168	2.5	1168	2;3	y	1.00	1610	6.5	1610	8;5	y	0.0153924380733025	-4.99999999999998	down	ENSMUSG00000026193.16	Fn1	chr1	protein_coding	fibronectin 1
known_NIR_915	chr1	71927873	71929463	+	71927873	71928791	3pMXE	ENSMUST00000187594.7	known	0.85	285	49	285	49	y	0.83	243	50	243	50	y	0.86	280	44	280	44	y	0.79	195	51	195	51	y	0.92	168	15	168	15	y	0.90	263	30	263	30	y	0.88	198	26	198	26	y	0.90	189	20	189	20	y	0.0142667925258861	-3.85714285714286	down	ENSMUSG00000099707.7	Gm8883	chr1	lncRNA	predicted gene 8883
known_NIR_991	chr1	75412655	75413422	+	75412837	75413422	5pMXE	ENSMUST00000131545.8	known	0.93	41	3	41	3	y	0.88	28	4	28	4	y	0.91	40	4	40	4	y	0.93	28	2	28	2	y	1.00	29	0	29	0	n	0.97	33	1	33	1	n	1.00	21	0	21	0	n	0.93	39	3	39	3	y	0.0250159174921613	-3.06954565901271	down	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_992	chr1	75412655	75413422	+	75412956	75413422	A5SS	ENSMUST00000145166.8	known	0.37	41	69	41	69	y	0.40	28	42	28	42	y	0.50	40	40	40	40	y	0.39	28	43	28	43	y	0.66	29	15	29	15	y	0.63	33	19	33	19	y	0.53	21	19	21	19	y	0.49	39	40	39	40	y	0.019491116691839	-3.27326835353989	down	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_997	chr1	75412655;75412956	75412759;75413422	+	75412655	75413422	cassetteExon	ENSMUST00000037796.14	known	0.46	35.0	41	1;69	41	n	0.43	21.5	28	1;42	28	n	0.33	20.0	40	0;40	40	n	0.44	22.0	28	1;43	28	n	0.21	7.5	29	0;15	29	n	0.22	9.5	33	0;19	33	n	0.31	9.5	21	0;19	21	n	0.35	21.0	39	2;40	39	y	0.0199127840934996	3.1748429432936	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1016	chr1	82713228	82728241	+	82713228;82724863	82724804;82728241	ES	ENSMUST00000073025.12	known	0.49	40	41.5	40	16;67	y	0.46	22	25.5	22	11;40	y	0.48	58	63.0	58	34;92	y	0.61	37	24.0	37	12;36	y	0.61	41	26.0	41	12;40	y	0.66	78	40.5	78	15;66	y	0.67	67	33.0	67	14;52	y	0.60	64	43.5	64	25;62	y	0.0258098084701191	-3.27326835353989	down	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1017	chr1	82713228	82728241	+	82724863	82728241	5pMXE	ENSMUST00000162794.2	known	0.37	40	67	40	67	y	0.35	22	40	22	40	y	0.39	58	92	58	92	y	0.51	37	36	37	36	y	0.51	41	40	41	40	y	0.54	78	66	78	66	y	0.56	67	52	67	52	y	0.51	64	62	64	62	y	0.0340103008001157	-3.2921346097961	down	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1079	chr1	87701953	87703479	+	87701953	87702535	3pMXE	ENSMUST00000129431.2	known	0.52	47	43	47	43	y	0.45	18	22	18	22	y	0.48	28	30	28	30	y	0.49	26	27	26	27	y	0.57	26	20	26	20	y	0.66	45	23	45	23	y	0.67	35	17	35	17	y	0.64	44	25	44	25	y	0.00234026230805751	-5.60315525728221	down	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1080	chr1	87701953	87703479	+	87701953;87702591	87702535;87703479	ES	ENSMUST00000027512.13	known	0.54	47	39.5	47	43;36	y	0.46	18	21.5	18	22;21	y	0.51	28	26.5	28	30;23	y	0.53	26	23.5	26	27;20	y	0.57	26	20.0	26	20;20	y	0.63	45	26.5	45	23;30	y	0.66	35	18.0	35	17;19	y	0.66	44	23.0	44	25;21	y	0.005259815055605	-4.33389071108769	down	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1081	chr1	87701953;87702850	87702535;87703479	+	87701953	87703479	cassetteExon	ENSMUST00000137638.8	known	0.32	22.5	47	43;2	47	y	0.38	11.0	18	22;0	18	n	0.36	15.5	28	30;1	28	n	0.34	13.5	26	27;0	26	n	0.28	10.0	26	20;0	26	n	0.20	11.5	45	23;0	45	n	0.20	8.5	35	17;0	35	n	0.22	12.5	44	25;0	44	n	0.00235420686826793	5.45544725589981	up	ENSMUSG00000026289.16	Atg16l1	chr1	protein_coding	autophagy related 16-like 1 (S. cerevisiae)
known_NIR_1092	chr1	88035521	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.79	207	54	207	54	y	0.97	96	3	96	3	y	0.79	254	68	254	68	y	0.87	109	16	109	16	y	0.54	149	128	149	128	y	0.70	242	104	242	104	y	0.60	206	139	206	139	y	0.54	219	183	219	183	y	0.00399627768827881	4.56070170039655	up	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1098	chr1	88067053	88142766	+	87999400	88142766	A5SS	ENSMUST00000073772.5	known	0.88	393	54	393	54	y	0.98	151	3	151	3	y	0.84	358	68	358	68	y	0.93	207	16	207	16	y	0.72	331	128	331	128	y	0.82	468	104	468	104	y	0.71	341	139	341	139	y	0.70	434	183	434	183	y	0.00626394582633664	4.1281677584334	up	ENSMUSG00000090175.2	Ugt1a9	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A9
known_NIR_1104	chr1	88129222	88142766	+	88035521	88142766	A5SS	ENSMUST00000113138.8	known	0.14	33	207	33	207	y	0.21	25	96	25	96	y	0.20	63	254	63	254	y	0.17	23	109	23	109	y	0.23	45	149	45	149	y	0.26	85	242	85	242	y	0.27	75	206	75	206	y	0.20	55	219	55	219	y	0.0363767369407195	-2.68328157299975	down	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
known_NIR_1110	chr1	88140593	88142766	+	88035521	88142766	A5SS	ENSMUST00000113138.8	known	0.67	417	207	417	207	y	0.58	133	96	133	96	y	0.72	655	254	655	254	y	0.49	105	109	105	109	y	0.86	882	149	882	149	y	0.87	1605	242	1605	242	y	0.83	1037	206	1037	206	y	0.82	1027	219	1027	219	y	0.0173254822256567	-4.41275340779845	down	ENSMUSG00000090145.8	Ugt1a6b	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A6B
known_NIR_1111	chr1	88140593	88142766	+	88067053	88142766	A5SS	ENSMUST00000113135.6	known	0.51	417	393	417	393	y	0.47	133	151	133	151	y	0.65	655	358	655	358	y	0.34	105	207	105	207	y	0.73	882	331	882	331	y	0.77	1605	468	1605	468	y	0.75	1037	341	1037	341	y	0.70	1027	434	1027	434	y	0.0279166250158054	-3.73802647142405	down	ENSMUSG00000090124.8	Ugt1a7c	chr1	protein_coding	UDP glucuronosyltransferase 1 family, polypeptide A7C
known_NIR_1165	chr1	92845848	92846660	+	92845848	92846595	A3SS	ENSMUST00000027487.15	known	0.05	8	160	8	160	y	0.00	0	48	0	48	n	0.00	0	143	0	143	n	0.00	0	83	0	83	n	0.05	6	107	6	107	y	0.05	7	144	7	144	y	0.05	7	132	7	132	y	0.08	13	156	13	156	y	0.0278992032043422	-3.08697453256516	down	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1180	chr1	93406790	93416850	+	93406790	93416846	A3SS	ENSMUST00000027495.15	known	0.00	0	50	0	50	n	0.00	0	21	0	21	n	0.00	0	33	0	33	n	0.00	0	27	0	27	n	0.10	3	26	3	26	y	0.08	4	45	4	45	y	0.06	2	30	2	30	y	0.03	1	38	1	38	n	0.0202357201766644	-4.52097913470618	down	ENSMUSG00000026276.21	Septin2	chr1	protein_coding	septin 2
known_NIR_1205	chr1	9620169;9620872	9620786;9623148	+	9620169	9623148	cassetteExon	ENSMUST00000027044.15	known	0.01	1.0	100	2;0	100	n	0.00	0.0	50	0;0	50	n	0.01	0.5	97	1;0	97	n	0.01	0.5	48	1;0	48	n	0.01	1.0	77	0;2	77	n	0.02	2.5	143	3;2	143	y	0.02	1.5	81	3;0	81	n	0.02	2.0	93	4;0	93	n	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1218	chr1	97753762	97759180	-	97753765	97759180	A3SS	ENSMUST00000058762.15	known	0.23	7	24	7	24	y	0.17	5	25	5	25	y	0.16	10	51	10	51	y	0.24	5	16	5	16	y	0.00	0	14	0	14	n	0.00	0	25	0	25	n	0.16	5	27	5	27	y	0.00	0	20	0	20	n	0.0195757645255541	3.56289417132099	up	ENSMUSG00000026335.17	Pam	chr1	protein_coding	peptidylglycine alpha-amidating monooxygenase
known_NIR_1270	chr10	116363854	116384938	-	116363854;116373353	116373126;116384938	ES	ENSMUST00000169576.8	known	0.72	28	11.0	28	20;2	y	0.73	11	4.0	11	8;0	n	0.69	24	11.0	24	18;4	y	0.73	15	5.5	15	9;2	y	0.87	24	3.5	24	7;0	n	0.81	23	5.5	23	11;0	n	0.80	20	5.0	20	8;2	y	0.81	34	8.0	34	16;0	n	0.00263394372741873	-5.64619500834758	down	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1272	chr10	116363854;116373183	116373126;116384938	-	116363854	116384938	cassetteExon	ENSMUST00000105267.8	known	0.28	11.0	28	20;2	28	y	0.35	6.0	11	8;4	11	y	0.33	12.0	24	18;6	24	y	0.32	7.0	15	9;5	15	y	0.17	5.0	24	7;3	24	y	0.25	7.5	23	11;4	23	y	0.22	5.5	20	8;3	20	y	0.30	14.5	34	16;13	34	y	0.0441511328645796	2.74574770049665	up	ENSMUSG00000020166.16	Cnot2	chr10	protein_coding	CCR4-NOT transcription complex, subunit 2
known_NIR_1284	chr10	117185372	117191840	-	117191757	117191840	3pMXE	ENSMUST00000175888.2	known	0.96	51	2	51	2	y	0.97	33	1	33	1	n	1.00	61	0	61	0	n	0.94	31	2	31	2	y	0.91	31	3	31	3	y	0.92	67	6	67	6	y	0.90	38	4	38	4	y	0.91	42	4	42	4	y	0.0147526680821338	4.37269732861889	up	ENSMUSG00000055531.13	Cpsf6	chr10	protein_coding	cleavage and polyadenylation specific factor 6
known_NIR_1310	chr10	122845536	122846399	-	122845536;122845835	122845818;122846399	ES	ENSMUST00000073792.11	known	0.66	75	38.5	75	36;41	y	0.73	61	22.0	61	21;23	y	0.78	96	26.5	96	27;26	y	0.78	50	14.0	50	13;15	y	0.88	46	6.0	46	8;4	y	0.84	95	18.0	95	17;19	y	0.85	54	9.5	54	9;10	y	0.78	95	26.5	95	25;28	y	0.0326924796252531	-2.83315298789931	down	ENSMUSG00000034602.16	Mon2	chr10	protein_coding	MON2 homolog, regulator of endosome to Golgi trafficking
known_NIR_1382	chr10	128035627;128036171	128036013;128037075	+	128035627;128036834	128036755;128037075	MXE	ENSMUST00000143827.8	known	0.03	9.0	257.0	15;3	1;513	n	0.03	3.5	98.5	6;1	0;197	n	0.03	7.0	240.0	14;0	0;480	n	0.04	7.0	151.0	12;2	0;302	n	0.02	6.5	267.0	13;0	0;534	n	0.02	9.0	399.5	16;2	2;797	y	0.03	7.5	288.5	15;0	3;574	n	0.01	10.0	711.5	20;0	6;1417	n	0.0478566196408534	2.61116483933547	up	ENSMUSG00000044005.14	Gls2	chr10	protein_coding	glutaminase 2 (liver, mitochondrial)
known_NIR_1412	chr10	128328271	128329408	-	128328271;128328578	128328471;128329408	ES	ENSMUST00000217969.2	known	0.02	16	944.5	16	1831;58	y	0.01	8	530.0	8	1023;37	y	0.02	19	991.0	19	1916;66	y	0.02	10	534.0	10	1032;36	y	0.01	4	610.5	4	1181;40	y	0.00	3	933.0	3	1786;80	y	0.01	6	779.5	6	1515;44	y	0.01	5	805.5	5	1548;63	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1414	chr10	128328271	128329408	-	128328404	128329408	A3SS	ENSMUST00000220307.2	known	0.76	16	5	16	5	y	0.80	8	2	8	2	y	0.76	19	6	19	6	y	0.83	10	2	10	2	y	0.67	4	2	4	2	n	0.60	3	2	3	2	n	0.46	6	7	6	7	y	0.71	5	2	5	2	n	0.0426984247879447	3.08695652173913	up	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1416	chr10	128328271;128328914	128328471;128329408	-	128328271	128329408	cassetteExon	ENSMUST00000218713.2	known	0.98	915.5	16	1831;0	16	n	0.98	511.5	8	1023;0	8	n	0.98	958.0	19	1916;0	19	n	0.98	516.0	10	1032;0	10	n	0.99	590.5	4	1181;0	4	n	1.00	893.0	3	1786;0	3	n	0.99	758.0	6	1515;1	6	n	0.99	775.0	5	1548;2	5	y	0.0153924380733025	-4.99999999999998	down	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1494	chr10	21870724	21870865	+	21868306	21870865	A5SS	ENSMUST00000150089.8	known	0.93	13	1	13	1	n	0.93	14	1	14	1	n	0.80	16	4	16	4	y	0.89	8	1	8	1	n	1.00	25	0	25	0	n	1.00	24	0	24	0	n	1.00	5	0	5	0	n	0.93	25	2	25	2	y	0.0453912417969827	-2.69149533850435	down	ENSMUSG00000019970.16	Sgk1	chr10	protein_coding	serum/glucocorticoid regulated kinase 1
known_NIR_1518	chr10	24707704	24718597	-	24707704	24711914	5pMXE	ENSMUST00000020169.9	known	0.23	36	118	36	118	y	0.20	14	56	14	56	y	0.35	43	79	43	79	y	0.18	20	90	20	90	y	0.65	34	18	34	18	y	0.53	68	61	68	61	y	0.43	22	29	22	29	y	0.45	58	70	58	70	y	0.00547265423235554	-4.38018795391567	down	ENSMUSG00000019989.9	Enpp3	chr10	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 3
known_NIR_1530	chr10	29189360	29193503	+	29189293	29193503	A5SS	ENSMUST00000160399.8	known	0.11	6	49	6	49	y	0.13	2	13	2	13	y	0.06	2	34	2	34	y	0.04	1	22	1	22	n	0.17	8	40	8	40	y	0.13	6	40	6	40	y	0.18	7	31	7	31	y	0.21	10	38	10	38	y	0.0183505461927771	-3.27326835353989	down	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1532	chr10	29189729	29193503	+	29189360	29193503	A5SS	ENSMUST00000161605.8	known	0.94	98	6	98	6	y	0.95	35	2	35	2	y	0.96	48	2	48	2	y	0.98	48	1	48	1	n	0.90	73	8	73	8	y	0.93	86	6	86	6	y	0.91	71	7	71	7	y	0.91	97	10	97	10	y	0.00655106588683762	4.24264068711928	up	ENSMUSG00000019883.12	Echdc1	chr10	protein_coding	enoyl Coenzyme A hydratase domain containing 1
known_NIR_1621	chr10	53951366	53952559	-	53951366	53951622	5pMXE	ENSMUST00000003843.16	known	0.01	2	276	2	276	y	0.02	3	120	3	120	y	0.01	1	191	1	191	n	0.03	4	143	4	143	y	0.01	1	131	1	131	n	0.00	1	250	1	250	n	0.00	0	128	0	128	n	0.00	0	250	0	250	n	0.0435576347221575	2.77746029931765	up	ENSMUSG00000003746.17	Man1a	chr10	protein_coding	mannosidase 1, alpha
known_NIR_1622	chr10	57362697;57367025	57366954;57371994	+	57362697	57371994	cassetteExon	ENSMUST00000220353.2	known	0.05	3.5	63	1;6	63	n	0.05	0.5	10	1;0	10	n	0.07	2.5	33	1;4	33	n	0.02	0.5	32	0;1	32	n	0.10	3.0	28	2;4	28	y	0.06	2.5	39	3;2	39	y	0.08	2.0	24	0;4	24	n	0.12	4.0	30	2;6	30	y	0.0440470185868183	-2.57260968875712	down	ENSMUSG00000019878.9	Hsf2	chr10	protein_coding	heat shock factor 2
known_NIR_1627	chr10	58091704	58092569	+	58091704	58092642	A3SS	ENSMUST00000057659.14	known	0.10	2	19	2	19	y	0.06	1	16	1	16	n	0.10	1	9	1	9	n	0.05	1	19	1	19	n	0.00	0	16	0	16	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00975092968303951	5.89363552987764	up	ENSMUSG00000038039.14	Gcc2	chr10	protein_coding	GRIP and coiled-coil domain containing 2
known_NIR_1634	chr10	59188081;59191242	59191172;59197683	+	59188081;59190232	59190162;59197683	MXE	ENSMUST00000009789.15	known	0.67	24.0	12.0	19;29	13;11	y	0.40	6.0	9.0	6;6	8;10	y	0.55	16.0	13.0	17;15	19;7	y	0.58	7.0	5.0	8;6	7;3	y	0.62	5.0	3.0	5;5	1;5	n	0.78	19.5	5.5	16;23	1;10	n	0.89	12.0	1.5	10;14	2;1	n	0.72	9.0	3.5	8;10	2;5	y	0.0438876891858979	-2.54328289299652	down	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
known_NIR_1640	chr10	59732323	59733313	+	59732269	59733313	A5SS	ENSMUST00000147914.8	known	0.63	67	39	67	39	y	0.57	29	22	29	22	y	0.60	64	42	64	42	y	0.65	44	24	44	24	y	0.52	41	38	41	38	y	0.56	66	51	66	51	y	0.51	43	42	43	42	y	0.58	60	44	60	44	y	0.027129841396788	2.90868211647067	up	ENSMUSG00000020109.14	Dnajb12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member B12
known_NIR_1697	chr10	62626821	62627995	-	62626821	62627984	A5SS	ENSMUST00000020268.7	known	0.84	21	4	21	4	y	0.75	9	3	9	3	y	0.71	12	5	12	5	y	0.78	14	4	14	4	y	0.89	16	2	16	2	y	0.84	21	4	21	4	y	0.83	10	2	10	2	y	0.88	15	2	15	2	y	0.0375252651670557	-2.89470384406204	down	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
known_NIR_1699	chr10	62803521	62805559	+	62803521	62805555	A3SS	ENSMUST00000131422.8	known	0.08	3	35	3	35	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.14	3	18	3	18	y	0.17	5	24	5	24	y	0.04	1	22	1	22	n	0.11	3	25	3	25	y	0.0358512400031659	-2.77143483846	down	ENSMUSG00000036875.16	Dna2	chr10	protein_coding	DNA replication helicase/nuclease 2
known_NIR_1720	chr10	69049205	69051132	+	68991361	69051132	A5SS	ENSMUST00000167286.8	known	0.44	15	19	15	19	y	0.35	8	15	8	15	y	0.27	6	16	6	16	y	0.35	6	11	6	11	y	0.62	10	6	10	6	y	0.69	29	13	29	13	y	0.73	22	8	22	8	y	0.55	11	9	11	9	y	0.00146846409871284	-5.59583267515531	down	ENSMUSG00000019944.15	Rhobtb1	chr10	protein_coding	Rho-related BTB domain containing 1
known_NIR_1804	chr10	77458250	77477294	+	77466728	77477294	A5SS&ES	ENSMUST00000174113.8	known	0.01	1	139	1	139	n	0.01	1	119	1	119	n	0.02	3	124	3	124	y	0.02	2	81	2	81	y	0.01	1	73	1	73	n	0.00	0	86	0	86	n	0.00	0	96	0	96	n	0.01	1	76	1	76	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000112241.2	Gm49325	chr10	protein_coding	predicted gene, 49325
known_NIR_1805	chr10	77458250;77466728	77466560;77477294	+	77458250	77477294	cassetteExon	ENSMUST00000172813.2	known	0.99	151.5	1	164;139	1	n	0.99	123.5	1	128;119	1	n	0.98	130.5	3	137;124	3	y	0.98	104.5	2	128;81	2	y	0.99	73.0	1	73;73	1	n	1.00	82.5	0	79;86	0	n	1.00	99.5	0	103;96	0	n	0.99	76.0	1	76;76	1	n	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000009293.18	Ube2g2	chr10	protein_coding	ubiquitin-conjugating enzyme E2G 2
known_NIR_1842	chr10	79386240	79390380	-	79386240	79390908	A5SS	ENSMUST00000062855.15	known	0.38	3	5	3	5	n	0.29	2	5	2	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	2	4	2	4	n	0.60	3	2	3	2	n	1.00	1	0	1	0	n	0.55	6	5	6	5	y	0.0421998607440938	-2.64928486131057	down	ENSMUSG00000042570.15	Mier2	chr10	protein_coding	MIER family member 2
known_NIR_1855	chr10	79574244	79574516	-	79574284	79574516	A3SS	ENSMUST00000159082.8	known	0.00	0	44	0	44	n	0.00	0	17	0	17	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.09	2	20	2	20	y	0.05	2	38	2	38	y	0.05	1	19	1	19	n	0.02	1	44	1	44	n	0.0353528470025174	-3.65563077506965	down	ENSMUSG00000020329.13	Polrmt	chr10	protein_coding	polymerase (RNA) mitochondrial (DNA directed)
known_NIR_1877	chr10	79908352	79911062	-	79908352	79918449	A5SS	ENSMUST00000219260.2	known	0.23	8	27	8	27	y	0.48	12	13	12	13	y	0.32	8	17	8	17	y	0.34	11	21	11	21	y	0.12	2	15	2	15	y	0.05	1	18	1	18	n	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.00610597405062489	5.01901147542783	up	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1884	chr10	79962936	79963792	+	79962936	79963738	A3SS	ENSMUST00000144883.8	known	0.02	6	316	6	316	y	0.02	2	125	2	125	y	0.02	7	374	7	374	y	0.04	6	139	6	139	y	0.01	3	257	3	257	y	0.01	4	357	4	357	y	0.00	0	314	0	314	n	0.01	4	303	4	303	y	0.0307597787889486	3.13049516849971	up	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
known_NIR_1896	chr10	80101012	80109841	+	80097409	80109841	A5SS	ENSMUST00000156935.8	known	0.94	105	7	105	7	y	0.93	52	4	52	4	y	0.92	70	6	70	6	y	0.88	44	6	44	6	y	0.86	62	10	62	10	y	0.86	87	14	87	14	y	0.89	57	7	57	7	y	0.84	71	14	71	14	y	0.0179771110243771	3.29178080915518	up	ENSMUSG00000069565.13	Dazap1	chr10	protein_coding	DAZ associated protein 1
known_NIR_1904	chr10	80231119	80231270	-	80231035	80231270	A3SS	ENSMUST00000092295.10	known	0.09	28	299	28	299	y	0.07	12	160	12	160	y	0.06	16	266	16	266	y	0.09	15	160	15	160	y	0.03	7	194	7	194	y	0.05	18	320	18	320	y	0.07	22	277	22	277	y	0.04	13	277	13	277	y	0.0391664064465137	2.63964807038436	up	ENSMUSG00000035478.15	Mbd3	chr10	protein_coding	methyl-CpG binding domain protein 3
known_NIR_1929	chr10	80475067	80475371	+	80475067	80475414	A3SS	ENSMUST00000079773.14	known	0.01	2	247	2	247	y	0.01	1	177	1	177	n	0.02	5	266	5	266	y	0.02	2	123	2	123	y	0.01	1	136	1	136	n	0.00	0	253	0	253	n	0.00	0	216	0	216	n	0.00	0	209	0	209	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000003345.17	Csnk1g2	chr10	protein_coding	casein kinase 1, gamma 2
known_NIR_1986	chr10	81150952;81153237	81153160;81153600	+	81150952	81153600	cassetteExon	ENSMUST00000163075.8	known	0.15	5.5	32	4;7	32	y	0.17	2.5	12	2;3	12	y	0.16	4.5	23	5;4	23	y	0.23	3.0	10	4;2	10	y	0.10	1.5	13	1;2	13	n	0.14	5.5	35	5;6	35	y	0.12	3.5	25	2;5	25	y	0.08	2.5	27	3;2	27	y	0.0254478371837432	3.05063648747657	up	ENSMUSG00000034902.18	Pip5k1c	chr10	protein_coding	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma
known_NIR_2010	chr10	82062427	82063279	-	82062427	82063365	A5SS	ENSMUST00000041264.15	known	0.50	2	2	2	2	n	-	-	-	-	-	-	0.57	4	3	4	3	n	0.25	1	3	1	3	n	0.80	4	1	4	1	n	0.62	8	5	8	5	y	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.0484404716855963	-3.04645099891797	down	ENSMUSG00000062931.16	Zfp938	chr10	protein_coding	zinc finger protein 938
known_NIR_2057	chr10	88055222	88060894	+	88055222	88070256	A3SS	ENSMUST00000020248.16	known	0.04	6	150	6	150	y	0.04	3	67	3	67	y	0.03	5	146	5	146	y	0.02	1	58	1	58	n	0.00	0	98	0	98	n	0.01	1	174	1	174	n	0.00	0	135	0	135	n	0.02	2	117	2	117	y	0.0101755401234568	3.69274472937998	up	ENSMUSG00000020056.17	Washc3	chr10	protein_coding	WASH complex subunit 3
known_NIR_2077	chr10	89627343	89638881	+	89627343;89630486	89630345;89638881	ES	ENSMUST00000020112.7	known	0.06	4	65.5	4	66;65	y	0.00	0	18.0	0	21;15	n	0.07	3	37.0	3	41;33	y	0.00	0	30.5	0	38;23	n	0.16	5	26.5	5	25;28	y	0.06	3	46.0	3	53;39	y	0.19	6	25.5	6	30;21	y	0.14	7	44.5	7	42;47	y	0.024258901556717	-3.12471400905369	down	ENSMUSG00000019951.11	Uhrf1bp1l	chr10	protein_coding	UHRF1 (ICBP90) binding protein 1-like
known_NIR_2101	chr10	93908483	93910045	+	93881495	93910045	A5SS	ENSMUST00000020208.5	known	0.17	2	10	2	10	y	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.08	2	24	2	24	y	0.25	2	6	2	6	n	0.24	10	32	10	32	y	0.14	3	18	3	18	y	0.28	8	21	8	21	y	0.0192325541132549	-3.25950766894365	down	ENSMUSG00000020021.5	Fgd6	chr10	protein_coding	FYVE, RhoGEF and PH domain containing 6
known_NIR_2131	chr10	97318409	97319201	+	97315651	97319201	A5SS	ENSMUST00000105287.11	known	0.44	77	99	77	99	y	0.57	75	56	75	56	y	0.40	76	115	76	115	y	0.53	47	41	47	41	y	0.18	12	54	12	54	y	0.19	12	52	12	52	y	0.12	10	73	10	73	y	0.15	13	73	13	73	y	0.00163108832534401	7.67811750184204	up	ENSMUSG00000019929.17	Dcn	chr10	protein_coding	decorin
known_NIR_2197	chr11	101865765	101875438	-	101865765	101872443	5pMXE	ENSMUST00000125794.2	known	0.01	1	79	1	79	n	0.03	1	39	1	39	n	0.02	1	55	1	55	n	0.00	0	45	0	45	n	0.12	4	30	4	30	y	0.04	3	79	3	79	y	0.07	3	37	3	37	y	0.07	3	41	3	41	y	0.0292398510583222	-3.3717089216941	down	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
known_NIR_2198	chr11	101865765	101875438	-	101865765;101872669	101872443;101875438	ES	ENSMUST00000003612.13	known	0.01	1	70.0	1	79;61	n	0.02	1	43.0	1	39;47	n	0.02	1	50.0	1	55;45	n	0.00	0	37.0	0	45;29	n	0.14	4	24.5	4	30;19	y	0.04	3	69.0	3	79;59	y	0.08	3	35.0	3	37;33	y	0.06	3	44.0	3	41;47	y	0.0490344112514131	-3.05063648747657	down	ENSMUSG00000003518.14	Dusp3	chr11	protein_coding	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
known_NIR_2220	chr11	102184168	102184472	-	102184147	102184472	A3SS	ENSMUST00000141516.8	known	0.17	14	68	14	68	y	0.18	5	23	5	23	y	0.22	14	49	14	49	y	0.22	10	35	10	35	y	0.11	5	40	5	40	y	0.16	12	62	12	62	y	0.15	7	41	7	41	y	0.05	3	56	3	56	y	0.0405959541416966	2.83582171808348	up	ENSMUSG00000059995.13	Atxn7l3	chr11	protein_coding	ataxin 7-like 3
known_NIR_2305	chr11	106668387;106669633	106669543;106669910	-	106668387	106669910	cassetteExon	ENSMUST00000155107.8	known	0.26	4.5	13	9;0	13	n	-	-	-	-	-	-	0.21	3.0	11	4;2	11	y	0.20	0.5	2	1;0	2	n	0.07	1.0	13	2;0	13	n	0.10	1.5	13	2;1	13	n	0.13	1.5	10	3;0	10	n	0.19	3.0	13	6;0	13	n	0.0247750859027769	3.18752338713169	up	ENSMUSG00000020718.13	Polg2	chr11	protein_coding	polymerase (DNA directed), gamma 2, accessory subunit
known_NIR_2322	chr11	107517540	107518176	+	107517540	107518179	A3SS	ENSMUST00000100305.8	known	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.30	3	7	3	7	y	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.0253967587393477	-2.96560082843521	down	ENSMUSG00000020721.17	Helz	chr11	protein_coding	helicase with zinc finger domain
known_NIR_2324	chr11	109256588	109283172	+	109256588	109271041	3pMXE	ENSMUST00000106702.4	known	0.79	33	9	33	9	y	0.61	20	13	20	13	y	0.74	26	9	26	9	y	0.67	24	12	24	12	y	0.62	25	15	25	15	y	0.58	36	26	36	26	y	0.50	18	18	18	18	y	0.57	27	20	27	20	y	0.0335582593412383	2.89193511665273	up	ENSMUSG00000020611.15	Gna13	chr11	protein_coding	guanine nucleotide binding protein, alpha 13
known_NIR_2333	chr11	109541899	109544605	+	109541450	109544605	A5SS	ENSMUST00000106677.8	known	0.96	272	10	272	10	y	0.96	191	8	191	8	y	0.94	246	17	246	17	y	0.94	155	10	155	10	y	0.99	130	1	130	1	n	0.99	290	4	290	4	y	0.99	154	2	154	2	y	1.00	265	0	265	0	n	0.0023172109243023	-6.75511502103171	down	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
known_NIR_2340	chr11	113354921;113413831	113413727;113414292	-	113354921	113414292	cassetteExon	ENSMUST00000071539.10	known	0.01	1.0	98	1;1	98	n	0.01	0.5	66	1;0	66	n	0.02	1.0	49	2;0	49	n	0.01	0.5	57	0;1	57	n	0.01	0.5	36	0;1	36	n	0.00	0.0	63	0;0	63	n	0.00	0.0	32	0;0	32	n	0.00	0.0	46	0;0	46	n	0.0300197452875444	2.82842712474619	up	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2341	chr11	113452950	113456412	-	113452950	113456502	A5SS	ENSMUST00000071539.10	known	0.07	3	43	3	43	y	0.05	2	39	2	39	y	0.06	3	46	3	46	y	0.05	2	35	2	35	y	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.0109042589936611	4.28438235961612	up	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2354	chr11	113620491	113630105	-	113620491	113641556	A5SS	ENSMUST00000106616.2	known	0.15	4	23	4	23	y	0.00	0	17	0	17	n	0.10	3	28	3	28	y	0.05	1	21	1	21	n	0.18	3	14	3	14	y	0.20	9	37	9	37	y	0.22	6	21	6	21	y	0.12	3	23	3	23	y	0.0406036023602296	-2.70358877516411	down	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2355	chr11	113620491	113630105	-	113620491	113642514	A5SS	ENSMUST00000053536.5	known	0.07	4	52	4	52	y	0.00	0	16	0	16	n	0.10	3	27	3	27	y	0.06	1	15	1	15	n	0.23	3	10	3	10	y	0.17	9	43	9	43	y	0.20	6	24	6	24	y	0.08	3	35	3	35	y	0.0321580765225448	-2.91487624034083	down	ENSMUSG00000041598.8	Cdc42ep4	chr11	protein_coding	CDC42 effector protein (Rho GTPase binding) 4
known_NIR_2364	chr11	114742812	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	known	0.88	29	4	29	4	y	0.85	11	2	11	2	y	0.94	16	1	16	1	n	0.92	12	1	12	1	n	1.00	15	0	15	0	n	1.00	18	0	18	0	n	0.93	13	1	13	1	n	1.00	29	0	29	0	n	0.0194848631636447	-3.18439175937776	down	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2368	chr11	114743099	114754293	+	114742069	114754293	A5SS	ENSMUST00000133245.2	known	0.78	14	4	14	4	y	0.80	8	2	8	2	y	0.95	20	1	20	1	n	0.83	5	1	5	1	n	1.00	7	0	7	0	n	1.00	20	0	20	0	n	0.90	9	1	9	1	n	1.00	15	0	15	0	n	0.0300486177291841	-2.96363501972164	down	ENSMUSG00000051043.17	Gprc5c	chr11	protein_coding	G protein-coupled receptor, family C, group 5, member C
known_NIR_2372	chr11	114891899	114892313	-	114891811	114892313	A3SS	ENSMUST00000092464.10	known	0.22	2	7	2	7	n	0.50	4	4	4	4	n	0.14	2	12	2	12	y	0.40	4	6	4	6	y	0.00	0	11	0	11	n	0.00	0	7	0	7	n	0.20	2	8	2	8	y	0.00	0	9	0	9	n	0.0405288293305479	2.75409849240193	up	ENSMUSG00000044811.14	Cd300c2	chr11	protein_coding	CD300C molecule 2
known_NIR_2395	chr11	115320231;115320608	115320461;115320712	+	115320231	115320712	cassetteExon	ENSMUST00000123345.2	known	0.55	6.0	5	8;4	5	y	0.67	2.0	1	2;2	1	n	0.41	3.5	5	2;5	5	y	0.64	3.5	2	2;5	2	n	0.74	8.5	3	7;10	3	y	0.72	13.0	5	16;10	5	y	0.82	4.5	1	3;6	1	n	0.86	12.5	2	3;22	2	y	0.0246752539361364	-3.24304936015247	down	ENSMUSG00000016940.19	Kctd2	chr11	protein_coding	potassium channel tetramerisation domain containing 2
known_NIR_2445	chr11	116072846	116080241	-	116072846;116074450	116074290;116080241	ES	ENSMUST00000148601.2	known	0.64	1173	657.5	1173	1275;40	y	0.53	453	402.5	453	780;25	y	0.67	1319	646.5	1319	1256;37	y	0.59	614	434.0	614	846;22	y	0.73	1033	380.5	1033	739;22	y	0.76	2232	714.5	2232	1389;40	y	0.74	1125	392.5	1125	747;38	y	0.69	1381	612.5	1381	1176;49	y	0.0199663538655403	-3.60255164825966	down	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2446	chr11	116072846;116074450	116074290;116089048	-	116072846;116080401	116080241;116089048	MXE	ENSMUST00000072948.11	known	0.50	1164.5	1150.0	1275;1054	1173;1127	y	0.60	720.5	475.0	780;661	453;497	y	0.49	1155.5	1222.0	1256;1055	1319;1125	y	0.58	789.5	580.5	846;733	614;547	y	0.41	659.0	951.5	739;579	1033;870	y	0.39	1282.0	2028.0	1389;1175	2232;1824	y	0.39	674.0	1045.5	747;601	1125;966	y	0.45	1093.0	1313.0	1176;1010	1381;1245	y	0.0104463498655833	4.24793689690486	up	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2448	chr11	116074450	116089048	-	116080401	116089048	3pMXE	ENSMUST00000124684.2	known	0.48	1054	1127	1054	1127	y	0.57	661	497	661	497	y	0.48	1055	1125	1055	1125	y	0.57	733	547	733	547	y	0.40	579	870	579	870	y	0.39	1175	1824	1175	1824	y	0.38	601	966	601	966	y	0.45	1010	1245	1010	1245	y	0.0111276339107422	3.9634695544549	up	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2449	chr11	116074450;116080401	116080241;116089048	-	116074450	116089048	cassetteExon	ENSMUST00000066587.12	known	0.36	583.5	1054	40;1127	1054	y	0.28	261.0	661	25;497	661	y	0.36	581.0	1055	37;1125	1055	y	0.28	284.5	733	22;547	733	y	0.44	446.0	579	22;870	579	y	0.44	932.0	1175	40;1824	1175	y	0.46	502.0	601	38;966	601	y	0.39	647.0	1010	49;1245	1010	y	0.00892591393876503	-4.09090909090909	down	ENSMUSG00000020777.17	Acox1	chr11	protein_coding	acyl-Coenzyme A oxidase 1, palmitoyl
known_NIR_2456	chr11	116187624	116191092	-	116188489	116191092	A3SS&ES	ENSMUST00000139699.8	known	0.33	1	2	1	2	n	0.00	0	6	0	6	n	0.22	2	7	2	7	n	0.50	2	2	2	2	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.0429413522910037	-2.56851806843427	down	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2468	chr11	116734600	116739080	+	116734600	116736589	3pMXE	ENSMUST00000128784.2	known	0.75	58	19	58	19	y	0.80	37	9	37	9	y	0.70	71	31	71	31	y	0.81	35	8	35	8	y	0.90	54	6	54	6	y	0.89	79	10	79	10	y	0.83	54	11	54	11	y	0.83	68	14	68	14	y	0.0237957727625993	-3.08643743390384	down	ENSMUSG00000090266.11	Mettl23	chr11	protein_coding	methyltransferase like 23
known_NIR_2481	chr11	117157421	117181224	+	117109757	117181224	A5SS	ENSMUST00000093907.11	known	0.12	4	30	4	30	y	0.20	2	8	2	8	y	0.16	5	26	5	26	y	0.21	3	11	3	11	y	0.04	1	25	1	25	n	0.08	2	23	2	23	y	0.00	0	17	0	17	n	0.12	3	22	3	22	y	0.0154841516517337	3.40817821956109	up	ENSMUSG00000059248.14	Septin9	chr11	protein_coding	septin 9
known_NIR_2542	chr11	120031512;120038664	120038547;120041806	-	120031512;120032471	120032426;120041806	MXE	ENSMUST00000132239.8	known	0.44	106.0	135.5	3;209	270;1	n	0.49	81.0	85.5	7;155	171;0	n	0.46	73.0	86.5	3;143	171;2	y	0.46	82.0	98.0	3;161	196;0	n	0.40	31.0	46.0	1;61	92;0	n	0.39	62.0	95.0	1;123	190;0	n	0.41	39.5	58.0	0;79	116;0	n	0.44	45.5	59.0	1;90	118;0	n	0.0126197632513948	3.51631710477147	up	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2552	chr11	120357558	120358008	-	120357593	120358008	A3SS	ENSMUST00000143233.8	known	0.14	6	37	6	37	y	0.12	2	15	2	15	y	0.18	6	28	6	28	y	0.16	3	16	3	16	y	0.08	2	23	2	23	y	0.00	0	38	0	38	n	0.07	2	26	2	26	y	0.11	4	34	4	34	y	0.0264670002045716	3.19374388453426	up	ENSMUSG00000057594.13	Arl16	chr11	protein_coding	ADP-ribosylation factor-like 16
known_NIR_2566	chr11	120503427	120503672	-	120503427	120503856	A5SS	ENSMUST00000026129.16	known	0.30	263	603	263	603	y	0.32	113	236	113	236	y	0.25	217	656	217	656	y	0.29	110	265	110	265	y	0.24	164	533	164	533	y	0.24	271	870	271	870	y	0.25	215	657	215	657	y	0.24	246	774	246	774	y	0.046300847654319	3.1814297614599	up	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2602	chr11	120602721	120604519	-	120602721;120603538	120603266;120604519	ES	ENSMUST00000106154.8	known	0.91	129	13.0	129	19;7	y	0.86	51	8.0	51	13;3	y	0.93	137	10.5	137	12;9	y	0.86	43	7.0	43	10;4	y	0.97	107	3.0	107	4;2	y	0.93	134	10.0	134	16;4	y	0.95	140	8.0	140	9;7	y	0.97	109	3.5	109	7;0	n	0.0265015839444136	-3.21666578548505	down	ENSMUSG00000025144.18	Cenpx	chr11	protein_coding	centromere protein X
known_NIR_2619	chr11	121181716	121186855	+	121181716	121187049	A3SS	ENSMUST00000153579.2	known	0.97	39	1	39	1	n	0.96	22	1	22	1	n	0.93	26	2	26	2	y	0.90	19	2	19	2	y	1.00	11	0	11	0	n	1.00	28	0	28	0	n	1.00	11	0	11	0	n	1.00	19	0	19	0	n	0.0321194160504166	-3.79473319220206	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
known_NIR_2663	chr11	23446881	23447775	-	23446876	23447775	A3SS	ENSMUST00000109539.8	known	0.89	166	21	166	21	y	0.93	53	4	53	4	y	0.88	115	16	115	16	y	0.95	55	3	55	3	y	0.85	88	16	88	16	y	0.84	118	22	118	22	y	0.84	94	18	94	18	y	0.89	109	13	109	13	y	0.033527339740492	2.8239820062917	up	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
known_NIR_2733	chr11	33105220	33106003	-	33104060	33106003	A3SS	ENSMUST00000075641.10	known	0.11	59	489	59	489	y	0.11	25	193	25	193	y	0.09	55	538	55	538	y	0.12	24	181	24	181	y	0.08	33	392	33	392	y	0.06	36	549	36	549	y	0.09	47	466	47	466	y	0.08	56	662	56	662	y	0.0150107166402726	3.3717089216941	up	ENSMUSG00000057113.14	Npm1	chr11	protein_coding	nucleophosmin 1
known_NIR_2765	chr11	40626893	40627395	+	40626893	40627320	A3SS	ENSMUST00000020578.11	known	0.00	0	92	0	92	n	0.04	3	72	3	72	y	0.04	5	109	5	109	y	0.02	1	42	1	42	n	0.05	3	62	3	62	y	0.08	9	105	9	105	y	0.08	8	90	8	90	y	0.08	8	94	8	94	y	0.00885240562272023	-3.90557564601693	down	ENSMUSG00000020328.11	Nudcd2	chr11	protein_coding	NudC domain containing 2
known_NIR_2784	chr11	46327836	46331390	+	46330802	46331390	A5SS&ES	ENSMUST00000109232.4	known	0.00	0	65	0	65	n	0.03	1	35	1	35	n	0.02	1	60	1	60	n	0.00	0	25	0	25	n	0.10	3	28	3	28	y	0.02	1	55	1	55	n	0.06	2	31	2	31	y	0.09	4	43	4	43	y	0.047411421627455	-2.82453925057203	down	ENSMUSG00000020397.16	Med7	chr11	protein_coding	mediator complex subunit 7
known_NIR_2806	chr11	4824103	4833368	+	4833253	4833368	5pMXE	ENSMUST00000139737.2	known	0.88	377	50	377	50	y	0.82	76	17	76	17	y	0.90	334	37	334	37	y	0.77	102	31	102	31	y	0.95	336	19	336	19	y	0.95	471	24	471	24	y	0.95	325	16	325	16	y	0.93	395	30	395	30	y	0.0384065871447074	-3.42062802065417	down	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2808	chr11	4824103;4833253	4832901;4833368	+	4824103	4833368	cassetteExon	ENSMUST00000038570.9	known	0.06	25.0	377	0;50	377	n	0.11	9.5	76	2;17	76	y	0.06	20.5	334	4;37	334	y	0.13	15.5	102	0;31	102	n	0.03	9.5	336	0;19	336	n	0.02	12.0	471	0;24	471	n	0.02	8.0	325	0;16	325	n	0.04	15.0	395	0;30	395	n	0.0348175284979514	3.39161723734601	up	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2819	chr11	49104469;49105481	49105382;49105891	+	49104469	49105891	cassetteExon	ENSMUST00000109198.8	known	0.27	4.5	12	2;7	12	y	0.22	2.5	9	0;5	9	n	0.08	1.5	17	1;2	17	n	0.22	2.0	7	3;1	7	n	0.10	1.0	9	0;2	9	n	0.05	0.5	10	1;0	10	n	0.00	0.0	7	0;0	7	n	0.04	0.5	12	0;1	12	n	0.0263689841855428	3.27652048385377	up	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2828	chr11	49763726;49765162	49765091;49769058	+	49763726;49764734	49764663;49769058	MXE	ENSMUST00000109179.9	known	0.85	86.0	15.5	93;79	12;19	y	0.88	48.5	6.5	51;46	5;8	y	0.91	83.5	8.5	77;90	6;11	y	0.92	64.0	5.5	53;75	4;7	y	0.97	95.5	3.0	88;103	2;4	y	0.93	88.0	6.5	86;90	4;9	y	0.92	59.0	5.0	48;70	3;7	y	0.95	105.5	6.0	101;110	9;3	y	0.0388104344626247	-2.71865066761325	down	ENSMUSG00000020366.19	Mapk9	chr11	protein_coding	mitogen-activated protein kinase 9
known_NIR_2835	chr11	50067713	50073319	+	50067713	50068503	3pMXE	ENSMUST00000143480.2	known	1.00	23	0	23	0	n	1.00	3	0	3	0	n	0.91	31	3	31	3	y	1.00	11	0	11	0	n	0.96	25	1	25	1	n	0.86	25	4	25	4	y	0.85	22	4	22	4	y	0.90	19	2	19	2	y	0.0451209950050944	2.52953038828156	up	ENSMUSG00000020381.11	Mrnip	chr11	protein_coding	MRN complex interacting protein
known_NIR_2863	chr11	5049477	5049748	+	5049566	5049748	A5SS	ENSMUST00000101610.10	known	0.11	6	47	6	47	y	0.14	3	19	3	19	y	0.12	5	37	5	37	y	0.08	2	22	2	22	y	0.04	1	27	1	27	n	0.08	4	46	4	46	y	0.00	0	42	0	42	n	0.03	1	35	1	35	n	0.0125505600766787	3.62033094019108	up	ENSMUSG00000034175.14	Rhbdd3	chr11	protein_coding	rhomboid domain containing 3
known_NIR_2878	chr11	51158158	51162627	+	51158158;51159058	51158992;51162627	ES	ENSMUST00000130641.8	known	0.86	57	9.0	57	10;8	y	0.79	28	7.5	28	10;5	y	0.78	45	12.5	45	17;8	y	0.85	32	5.5	32	8;3	y	0.89	33	4.0	33	8;0	n	0.94	64	4.0	64	7;1	n	0.85	38	6.5	38	9;4	y	0.88	53	7.5	53	11;4	y	0.0450869074685041	-2.52810291480115	down	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
known_NIR_2925	chr11	54830561	54846847	-	54830561	54831537	A5SS&ES	ENSMUST00000155316.2	known	0.10	2	18	2	18	y	0.33	4	8	4	8	y	0.06	1	15	1	15	n	0.08	1	11	1	11	n	0.30	3	7	3	7	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.31	4	9	4	9	y	0.0354175869389084	-2.76457613112503	down	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2926	chr11	54830561	54846847	-	54830561;54831708	54831537;54846847	ES	ENSMUST00000108889.10	known	0.14	2	12.5	2	18;7	y	0.35	4	7.5	4	8;7	y	0.07	1	12.5	1	15;10	n	0.09	1	10.0	1	11;9	n	0.35	3	5.5	3	7;4	y	0.50	6	6.0	6	6;6	y	0.36	4	7.0	4	8;6	y	0.38	4	6.5	4	9;4	y	0.0263148551385807	-3.21912774281333	down	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2927	chr11	54830561	54846847	-	54831708	54846847	3pMXE	ENSMUST00000151736.2	known	0.22	2	7	2	7	n	0.36	4	7	4	7	y	0.09	1	10	1	10	n	0.10	1	9	1	9	n	0.43	3	4	3	4	n	0.50	6	6	6	6	y	0.40	4	6	4	6	y	0.50	4	4	4	4	n	0.0181492464442193	-3.8948834400661	down	ENSMUSG00000020400.18	Tnip1	chr11	protein_coding	TNFAIP3 interacting protein 1
known_NIR_2997	chr11	59645935	59648350	+	59645935	59655206	A3SS	ENSMUST00000072031.13	known	0.03	7	253	7	253	y	0.04	5	122	5	122	y	0.04	10	215	10	215	y	0.02	2	124	2	124	y	0.01	1	116	1	116	n	0.01	3	197	3	197	y	0.02	3	168	3	168	y	0.01	1	182	1	182	n	0.0166979601915548	3.70328039909021	up	ENSMUSG00000005417.18	Mprip	chr11	protein_coding	myosin phosphatase Rho interacting protein
known_NIR_3026	chr11	60098083	60101162	-	60098083	60111279	A5SS	ENSMUST00000020846.8	known	0.71	110	46	110	46	y	0.42	11	15	11	15	y	0.55	43	35	43	35	y	0.50	21	21	21	21	y	0.87	184	27	184	27	y	0.87	295	45	295	45	y	0.91	243	24	243	24	y	0.86	241	38	241	38	y	0.0108450787315017	-5.34860235667331	down	ENSMUSG00000020538.16	Srebf1	chr11	protein_coding	sterol regulatory element binding transcription factor 1
known_NIR_3069	chr11	6216917	6217418	-	6216971	6217418	A3SS	ENSMUST00000004507.11	known	0.07	6	79	6	79	y	0.06	3	51	3	51	y	0.05	4	80	4	80	y	0.05	2	42	2	42	y	0.00	0	61	0	61	n	0.00	0	72	0	72	n	0.03	2	59	2	59	y	0.02	1	53	1	53	n	0.00370316011371883	5.05756338254115	up	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
known_NIR_3076	chr11	62236144	62240221	-	62236144	62240179	A5SS	ENSMUST00000101066.10	known	0.00	0	59	0	59	n	0.00	0	28	0	28	n	0.00	0	46	0	46	n	0.00	0	39	0	39	n	0.03	1	33	1	33	n	0.02	1	44	1	44	n	0.07	3	40	3	40	y	0.07	3	38	3	38	y	0.0364463452548051	-3.61222822798952	down	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3094	chr11	62424780;62425048	62424872;62427108	-	62424780	62427108	cassetteExon	ENSMUST00000018653.8	known	0.02	2.0	104	4;0	104	n	0.07	2.5	31	3;2	31	y	0.04	4.0	95	6;2	95	y	0.05	1.5	29	3;0	29	n	0.02	1.5	60	2;1	60	n	0.01	1.5	116	1;2	116	n	0.01	1.0	73	2;0	73	n	0.01	0.5	89	0;1	89	n	0.0486576625012574	3.03614588222994	up	ENSMUSG00000018509.9	Cenpv	chr11	protein_coding	centromere protein V
known_NIR_3106	chr11	6339513	6345125	+	6339140	6345125	A5SS	ENSMUST00000109787.8	known	1.00	11	0	11	0	n	1.00	9	0	9	0	n	1.00	13	0	13	0	n	0.71	5	2	5	2	n	0.75	3	1	3	1	n	0.79	11	3	11	3	y	0.33	1	2	1	2	n	0.44	4	5	4	5	n	0.0476373393569801	2.59585875875269	up	ENSMUSG00000041164.16	Zmiz2	chr11	protein_coding	zinc finger, MIZ-type containing 2
known_NIR_3128	chr11	68713491;68717030	68716996;68720741	-	68713491	68720741	cassetteExon	ENSMUST00000018880.14	known	0.29	15.0	36	14;16	36	y	0.36	13.0	23	11;15	23	y	0.29	17.0	42	17;17	42	y	0.20	8.5	34	7;10	34	y	0.18	5.5	25	5;6	25	y	0.09	6.5	65	6;7	65	y	0.11	6.0	48	4;8	48	y	0.15	9.0	50	7;11	50	y	0.0107858040879469	3.96237579501595	up	ENSMUSG00000018736.15	Ndel1	chr11	protein_coding	nudE neurodevelopment protein 1 like 1
known_NIR_3135	chr11	68989834	68991335	+	68986129	68991335	A5SS	ENSMUST00000101004.9	known	0.31	4	9	4	9	y	0.17	2	10	2	10	y	0.27	4	11	4	11	y	0.29	2	5	2	5	n	0.22	2	7	2	7	n	0.06	1	16	1	16	n	0.00	0	2	0	2	n	0.00	0	6	0	6	n	0.0264192709301483	3.13774673061013	up	ENSMUSG00000020893.18	Per1	chr11	protein_coding	period circadian clock 1
known_NIR_3164	chr11	69729475	69729746	+	69729399	69729746	A5SS	ENSMUST00000133967.8	known	0.87	811	121	811	121	y	0.86	333	53	333	53	y	0.83	779	156	779	156	y	0.87	354	52	354	52	y	0.89	572	73	572	73	y	0.90	861	92	861	92	y	0.88	720	96	720	96	y	0.89	821	103	821	103	y	0.0334976754042943	-3.15296312547233	down	ENSMUSG00000070394.11	Tmem256	chr11	protein_coding	transmembrane protein 256
known_NIR_3180	chr11	69810162;69810304	69810275;69811989	-	69810162;69811260	69811167;69811989	MXE	ENSMUST00000043419.10	known	0.00	0.0	15.0	0;0	16;14	n	0.17	3.5	17.5	1;6	24;11	n	0.00	0.0	28.0	0;0	34;22	n	0.00	0.0	10.5	0;0	16;5	n	0.22	5.5	19.5	0;11	26;13	n	0.18	4.5	21.0	3;6	25;17	y	0.11	2.5	19.5	0;5	23;16	n	0.20	4.5	17.5	2;7	19;16	y	0.0419347854872636	-2.767714794535	down	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3240	chr11	70540172	70540271	+	70540120	70540271	A5SS	ENSMUST00000141695.8	known	0.99	126	1	126	1	n	1.00	42	0	42	0	n	0.99	101	1	101	1	n	0.95	58	3	58	3	y	0.94	98	6	98	6	y	0.94	148	9	148	9	y	0.95	117	6	117	6	y	0.95	124	7	124	7	y	0.0388506763095764	3.27326835353988	up	ENSMUSG00000040746.16	Rnf167	chr11	protein_coding	ring finger protein 167
known_NIR_3296	chr11	72326590;72327658	72327265;72327965	+	72326590	72327965	cassetteExon	ENSMUST00000108499.2	known	0.84	109.0	21	85;133	21	y	0.79	41.5	11	21;62	11	y	0.77	99.0	29	52;146	29	y	0.78	53.5	15	31;76	15	y	0.82	80.0	18	39;121	18	y	0.90	112.5	13	74;151	13	y	0.84	83.0	16	51;115	16	y	0.88	92.0	13	70;114	13	y	0.0359666677486888	-2.71068738274197	down	ENSMUSG00000040471.18	Ggt6	chr11	protein_coding	gamma-glutamyltransferase 6
known_NIR_3309	chr11	74540520;74540944	74540916;74547249	+	74540520	74547249	cassetteExon	ENSMUST00000117818.2	known	0.04	7.5	163	5;10	163	y	0.07	5.0	67	3;7	67	y	0.05	5.5	96	1;10	96	n	0.03	2.5	92	0;5	92	n	0.01	1.0	72	0;2	72	n	0.01	1.5	123	0;3	123	n	0.04	3.5	77	0;7	77	n	0.02	2.5	142	0;5	142	n	0.0491582347608026	2.48043189240934	up	ENSMUSG00000020741.18	Cluh	chr11	protein_coding	clustered mitochondria (cluA/CLU1) homolog
known_NIR_3342	chr11	75547027	75548318	+	75542491	75548318	A5SS	ENSMUST00000069057.13	known	0.13	4	26	4	26	y	0.00	0	13	0	13	n	0.15	2	11	2	11	y	0.11	2	16	2	16	y	0.40	2	3	2	3	n	0.12	3	21	3	21	y	0.40	6	9	6	9	y	0.33	7	14	7	14	y	0.0390878546762981	-2.89577062771634	down	ENSMUSG00000017774.20	Myo1c	chr11	protein_coding	myosin IC
known_NIR_3412	chr11	78858859	78862143	-	78858859	78860540	5pMXE	ENSMUST00000140073.2	known	0.92	1353	115	1353	115	y	0.92	725	62	725	62	y	0.90	1137	120	1137	120	y	0.92	701	62	701	62	y	0.89	847	108	847	108	y	0.89	1219	152	1219	152	y	0.89	967	118	967	118	y	0.91	1243	116	1243	116	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000001123.16	Lgals9	chr11	protein_coding	lectin, galactose binding, soluble 9
known_NIR_3415	chr11	79132982	79133325	-	79132982	79135289	A5SS	ENSMUST00000017821.12	known	0.50	29	29	29	29	y	0.53	9	8	9	8	y	0.52	30	28	30	28	y	0.37	11	19	11	19	y	0.40	14	21	14	21	y	0.28	10	26	10	26	y	0.33	9	18	9	18	y	0.27	28	77	28	77	y	0.0163547376845382	3.36067220166722	up	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3416	chr11	79132982	79135289	-	79134401	79135289	3pMXE	ENSMUST00000145772.8	known	0.26	29	84	29	84	y	0.17	8	40	8	40	y	0.25	28	82	28	82	y	0.31	19	42	19	42	y	0.40	21	32	21	32	y	0.47	26	29	26	29	y	0.40	18	27	18	27	y	0.52	77	70	77	70	y	0.00283316489663195	-4.85666795109812	down	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3417	chr11	79132982;79134401	79134226;79135289	-	79132982	79135289	cassetteExon	ENSMUST00000017821.12	known	0.61	45.0	29	6;84	29	y	0.74	22.5	8	5;40	8	y	0.61	44.0	28	6;82	28	y	0.54	22.0	19	2;42	19	y	0.45	17.5	21	3;32	21	y	0.37	15.5	26	2;29	26	y	0.43	13.5	18	0;27	18	n	0.34	39.0	77	8;70	77	y	0.00566063027481651	4.64584116592567	up	ENSMUSG00000017677.12	Wsb1	chr11	protein_coding	WD repeat and SOCS box-containing 1
known_NIR_3420	chr11	79150248	79164603	-	79150248	79164488	A5SS	ENSMUST00000208339.2	known	0.58	19	14	19	14	y	0.36	4	7	4	7	y	0.59	24	17	24	17	y	0.32	11	23	11	23	y	0.61	11	7	11	7	y	0.64	18	10	18	10	y	0.83	10	2	10	2	y	0.67	26	13	26	13	y	0.0453579546490219	-2.60169218556159	down	ENSMUSG00000108822.2	Gm44787	chr11	lncRNA	predicted gene 44787
known_NIR_3477	chr11	83873133;83876377	83876075;83877640	+	83873133	83877640	cassetteExon	ENSMUST00000049714.15	known	0.93	12.5	1	11;14	1	n	0.91	10.0	1	13;7	1	n	0.85	11.5	2	14;9	2	y	1.00	9.0	0	9;9	0	n	0.62	5.0	3	6;4	3	y	0.71	15.0	6	10;20	6	y	0.82	9.0	2	6;12	2	y	0.61	11.0	7	10;12	7	y	0.00979160562986093	4.02324809887831	up	ENSMUSG00000034940.16	Synrg	chr11	protein_coding	synergin, gamma
known_NIR_3499	chr11	85244059	85245714	+	85244059;85245505	85245420;85245714	ES	ENSMUST00000108061.8	known	0.74	13	4.5	13	5;4	y	0.75	6	2.0	6	2;2	y	0.76	8	2.5	8	3;2	y	0.62	5	3.0	5	3;3	y	0.89	4	0.5	4	0;1	n	1.00	13	0.0	13	0;0	n	0.89	4	0.5	4	1;0	n	0.80	6	1.5	6	2;1	n	0.0158499086279677	-3.38607503901281	down	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3500	chr11	85250505;85251888	85251850;85256378	+	85250505	85256378	cassetteExon	ENSMUST00000108056.8	known	0.11	3.5	29	2;5	29	y	0.11	1.0	8	0;2	8	n	0.04	1.5	35	2;1	35	n	0.14	3.0	19	3;3	19	y	0.00	0.0	11	0;0	11	n	0.02	0.5	32	0;1	32	n	0.00	0.0	5	0;0	5	n	0.06	1.5	22	1;2	22	n	0.0242242264710587	3.13785816221094	up	ENSMUSG00000059439.16	Bcas3	chr11	protein_coding	breast carcinoma amplified sequence 3
known_NIR_3527	chr11	87483076;87483852	87483724;87484215	+	87483076	87484215	cassetteExon	ENSMUST00000103179.10	known	0.58	9.5	7	1;18	7	n	0.73	8.0	3	5;11	3	y	0.43	3.0	4	0;6	4	n	0.55	8.5	7	0;17	7	n	0.17	2.0	10	1;3	10	n	0.50	5.0	5	0;10	5	n	0.33	2.5	5	0;5	5	n	0.37	3.5	6	1;6	6	n	0.0465722190936358	2.50516026997279	up	ENSMUSG00000018401.18	Mtmr4	chr11	protein_coding	myotubularin related protein 4
known_NIR_3534	chr11	87965551	87966999	+	87965551	87967017	A3SS	ENSMUST00000018521.11	known	0.14	4	24	4	24	y	0.16	3	16	3	16	y	0.19	5	21	5	21	y	0.27	3	8	3	8	y	0.06	1	17	1	17	n	0.11	2	17	2	17	y	0.00	0	8	0	8	n	0.14	3	19	3	19	y	0.0364931265174637	2.68447493822352	up	ENSMUSG00000018377.11	Vezf1	chr11	protein_coding	vascular endothelial zinc finger 1
known_NIR_3556	chr11	94002972;94004127	94004089;94004999	+	94002972	94004999	cassetteExon	ENSMUST00000041956.14	known	0.13	13.0	84	14;12	84	y	0.33	14.0	28	14;14	28	y	0.21	23.0	87	22;24	87	y	0.26	13.5	39	13;14	39	y	0.09	4.5	43	7;2	43	y	0.08	6.5	70	8;5	70	y	0.09	6.0	60	4;8	60	y	0.04	4.0	109	5;3	109	y	0.0288327015432247	3.59951030401732	up	ENSMUSG00000020859.17	Spag9	chr11	protein_coding	sperm associated antigen 9
known_NIR_3648	chr11	98935738	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	known	0.31	5	11	5	11	y	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.29	2	5	2	5	n	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.57	8	6	8	6	y	1.00	6	0	6	0	n	0.0448791353751691	-2.66484480014131	down	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3651	chr11	98938229	98939052	+	98933328	98939052	A5SS	ENSMUST00000177105.2	known	0.39	7	11	7	11	y	0.44	4	5	4	5	n	0.31	4	9	4	9	y	0.55	6	5	6	5	y	0.73	8	3	8	3	y	0.70	14	6	14	6	y	0.67	12	6	12	6	y	1.00	4	0	4	0	n	0.0109030121767186	-3.86967584720482	down	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
known_NIR_3670	chr12	101017921	101019688	-	101017921	101019727	A5SS	ENSMUST00000048305.10	known	0.20	22	90	22	90	y	0.13	6	40	6	40	y	0.12	8	58	8	58	y	0.17	7	34	7	34	y	0.32	10	21	10	21	y	0.24	13	42	13	42	y	0.23	10	33	10	33	y	0.33	31	62	31	62	y	0.00977137104390526	-3.90434404721515	down	ENSMUSG00000041846.16	Ppp4r3a	chr12	protein_coding	protein phosphatase 4 regulatory subunit 3A
known_NIR_3678	chr12	101914304	101914534	-	101914307	101914534	A3SS	ENSMUST00000021606.12	known	0.24	5	16	5	16	y	0.17	2	10	2	10	y	0.27	3	8	3	8	y	0.19	3	13	3	13	y	0.00	0	6	0	6	n	0.13	3	20	3	20	y	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.0180918079117368	3.4701687563303	up	ENSMUSG00000021189.12	Atxn3	chr12	protein_coding	ataxin 3
known_NIR_3681	chr12	102292171	102292593	+	102292171	102317141	A3SS	ENSMUST00000056950.14	known	0.04	1	25	1	25	n	0.14	2	12	2	12	y	0.11	3	25	3	25	y	0.14	2	12	2	12	y	0.00	0	25	0	25	n	0.03	1	30	1	30	n	0.06	1	15	1	15	n	0.05	1	20	1	20	n	0.0464485437869575	2.68105094842194	up	ENSMUSG00000044456.17	Rin3	chr12	protein_coding	Ras and Rab interactor 3
known_NIR_3757	chr12	110452386	110488925	+	110432454	110488925	A5SS	ENSMUST00000220509.2	known	0.34	64	122	64	122	y	0.15	15	82	15	82	y	0.23	35	114	35	114	y	0.26	24	67	24	67	y	0.41	29	42	29	42	y	0.37	62	107	62	107	y	0.43	42	55	42	55	y	0.48	48	52	48	52	y	0.0121505002184951	-3.90644891017278	down	ENSMUSG00000017843.15	Ppp2r5c	chr12	protein_coding	protein phosphatase 2, regulatory subunit B', gamma
known_NIR_3763	chr12	110745912	110759548	+	110745912	110769839	A3SS	ENSMUST00000193053.6	known	0.37	25	43	25	43	y	0.17	4	20	4	20	y	0.26	11	32	11	32	y	0.35	15	28	15	28	y	0.32	8	17	8	17	y	0.50	22	22	22	22	y	0.51	19	18	19	18	y	0.46	26	30	26	30	y	0.0453278130670544	-2.52064895371808	down	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
known_NIR_3788	chr12	111508744;111509275	111509214;111509534	+	111508744	111509534	cassetteExon	ENSMUST00000222388.2	known	0.97	341.5	10	2;681	10	y	0.96	161.5	6	1;322	6	n	0.98	328.5	8	4;653	8	y	0.97	182.5	5	0;365	5	n	1.00	230.5	1	2;459	1	n	0.99	352.0	3	0;704	3	n	0.99	257.5	3	1;514	3	n	0.98	315.0	5	3;627	5	y	0.013399964712331	-3.46410161513775	down	ENSMUSG00000021282.18	Eif5	chr12	protein_coding	eukaryotic translation initiation factor 5
known_NIR_3827	chr12	112645379	112645810	+	112645379	112645988	A3SS	ENSMUST00000174780.2	known	0.50	4	4	4	4	n	0.50	2	2	2	2	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	0.85	11	2	11	2	y	0.80	4	1	4	1	n	0.67	2	1	2	1	n	0.0144331242263267	-3.7570182486337	down	ENSMUSG00000037638.6	Zbtb42	chr12	protein_coding	zinc finger and BTB domain containing 42
known_NIR_3830	chr12	112898670	112902415	-	112898670	112901976	A5SS	ENSMUST00000222793.2	known	0.05	4	83	4	83	y	0.00	0	26	0	26	n	0.02	2	111	2	111	y	0.00	0	34	0	34	n	0.08	5	58	5	58	y	0.10	10	88	10	88	y	0.03	3	89	3	89	y	0.07	5	68	5	68	y	0.0335161851116514	-2.78151794983659	down	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3831	chr12	112898670	112902415	-	112898670;112902177	112901976;112902415	ES	ENSMUST00000002881.5	known	0.08	4	45.0	4	83;7	y	0.00	0	15.0	0	26;4	n	0.03	2	65.5	2	111;20	y	0.00	0	19.0	0	34;4	n	0.14	5	31.5	5	58;5	y	0.16	10	52.0	10	88;16	y	0.06	3	50.0	3	89;11	y	0.11	5	40.0	5	68;12	y	0.0209786704903525	-3.12551503293546	down	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3832	chr12	112898670	112902415	-	112898670;112902213	112901976;112902415	ES	ENSMUST00000221397.2	known	0.05	4	82.5	4	83;82	y	0.00	0	26.0	0	26;26	n	0.02	2	98.5	2	111;86	y	0.00	0	31.5	0	34;29	n	0.08	5	59.0	5	58;60	y	0.10	10	86.0	10	88;84	y	0.03	3	85.5	3	89;82	y	0.07	5	70.0	5	68;72	y	0.0335161851116514	-2.78151794983659	down	ENSMUSG00000002804.5	Nudt14	chr12	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 14
known_NIR_3872	chr12	24555033	24559453	+	24555033;24559180	24559083;24559453	ES	ENSMUST00000075954.9	known	0.39	7	11.0	7	11;11	y	0.40	2	3.0	2	0;6	n	0.14	2	12.0	2	9;15	y	0.33	1	2.0	1	1;3	n	0.00	0	8.5	0	6;11	n	0.18	1	4.5	1	4;5	n	0.00	0	7.5	0	5;10	n	0.22	2	7.0	2	4;10	y	0.0428307123157093	2.56212744441414	up	ENSMUSG00000059669.9	Taf1b	chr12	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, B
known_NIR_3889	chr12	30947805	30954869	-	30947805	30954717	A5SS	ENSMUST00000219697.2	known	0.52	117	109	117	109	y	0.62	57	35	57	35	y	0.48	99	109	99	109	y	0.57	62	47	62	47	y	0.44	67	85	67	85	y	0.42	107	147	107	147	y	0.46	92	106	92	106	y	0.47	114	130	114	130	y	0.0393011896644015	3.09220843218044	up	ENSMUSG00000044573.17	Acp1	chr12	protein_coding	acid phosphatase 1, soluble
known_NIR_3955	chr12	4935858	4944538	-	4935858;4941421	4941315;4944538	ES	ENSMUST00000020962.12	known	0.12	11	84.5	11	85;84	y	0.08	4	48.0	4	51;45	y	0.07	6	74.0	6	77;71	y	0.06	3	50.5	3	47;54	y	0.15	7	39.5	7	40;39	y	0.09	7	70.0	7	77;63	y	0.14	7	41.5	7	45;38	y	0.15	10	58.0	10	64;52	y	0.0427556406258754	-2.56776295506548	down	ENSMUSG00000020634.13	Ubxn2a	chr12	protein_coding	UBX domain protein 2A
known_NIR_3967	chr12	54738868	54739560	-	54738880	54739560	A3SS	ENSMUST00000161592.8	known	0.00	0	97	0	97	n	0.00	0	46	0	46	n	0.00	0	92	0	92	n	0.00	0	47	0	47	n	0.05	3	58	3	58	y	0.05	5	98	5	98	y	0.03	3	90	3	90	y	0.03	3	94	3	94	y	0.00616537313883716	-6.92820323027551	down	ENSMUSG00000054302.16	Eapp	chr12	protein_coding	E2F-associated phosphoprotein
known_NIR_4001	chr12	59184572	59193122	+	59184572	59191485	3pMXE	ENSMUST00000175803.2	known	0.18	94	427	94	427	y	0.09	23	231	23	231	y	0.15	73	410	73	410	y	0.11	30	235	30	235	y	0.22	71	257	71	257	y	0.21	121	456	121	456	y	0.22	69	241	69	241	y	0.17	88	419	88	419	y	0.027932036985044	-3.09728201711373	down	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4002	chr12	59184572	59193122	+	59184572;59191556	59191485;59193122	ES	ENSMUST00000219140.3	known	0.18	94	428.0	94	427;429	y	0.10	23	216.0	23	231;201	y	0.15	73	402.5	73	410;395	y	0.12	30	222.0	30	235;209	y	0.21	71	269.0	71	257;281	y	0.21	121	446.5	121	456;437	y	0.22	69	243.5	69	241;246	y	0.18	88	400.5	88	419;382	y	0.0223373184728102	-3.45699575818819	down	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4006	chr12	59184572;59193148	59193122;59193633	+	59184572;59191556	59191485;59193633	MXE	ENSMUST00000175912.8	known	0.57	284.5	215.0	94;475	427;3	y	0.52	128.5	117.0	23;234	231;3	y	0.57	272.0	205.5	73;471	410;1	n	0.53	134.5	120.5	30;239	235;6	y	0.62	208.5	128.5	71;346	257;0	n	0.61	353.0	229.5	121;585	456;3	y	0.62	194.0	121.0	69;319	241;1	n	0.56	267.0	210.5	88;446	419;2	y	0.0304268593130369	-2.82453925057203	down	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4014	chr12	64969542	64970281	+	64969188	64970281	A5SS	ENSMUST00000058135.6	known	0.55	6	5	6	5	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.18	2	9	2	9	y	0.00	0	2	0	2	n	0.18	2	9	2	9	y	0.0163143704752582	3.44090623658256	up	ENSMUSG00000047227.6	Gm527	chr12	protein_coding	predicted gene 527
known_NIR_4022	chr12	65102094;65102307	65102208;65102412	+	65102094	65102412	cassetteExon	ENSMUST00000120580.8	known	0.31	7.5	17	9;6	17	y	0.52	5.5	5	5;6	5	y	0.30	10.5	24	12;9	24	y	0.60	7.5	5	11;4	5	y	0.16	3.0	16	5;1	16	n	0.11	3.5	27	7;0	27	n	0.22	4.0	14	4;4	14	y	0.24	7.0	22	6;8	22	y	0.0379866757383019	3.08606699924184	up	ENSMUSG00000035597.20	Prpf39	chr12	protein_coding	pre-mRNA processing factor 39
known_NIR_4034	chr12	69629119	69629305	-	69629119	69629294	A5SS	ENSMUST00000058639.11	known	0.50	4	4	4	4	n	0.12	1	7	1	7	n	0.38	5	8	5	8	y	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.50	5	5	5	5	y	0.62	5	3	5	3	n	0.75	6	2	6	2	n	0.0355675717627169	-2.79444073657573	down	ENSMUSG00000049882.11	Vcpkmt	chr12	protein_coding	valosin containing protein lysine (K) methyltransferase
known_NIR_4071	chr12	72126430	72131305	-	72126430	72131423	A5SS	ENSMUST00000019862.3	known	0.05	3	60	3	60	y	0.00	0	23	0	23	n	0.02	1	65	1	65	n	0.03	1	38	1	38	n	0.10	6	54	6	54	y	0.06	5	85	5	85	y	0.04	2	48	2	48	y	0.08	5	57	5	57	y	0.0365200450780456	-2.71360210119987	down	ENSMUSG00000019718.9	L3hypdh	chr12	protein_coding	L-3-hydroxyproline dehydratase (trans-)
known_NIR_4107	chr12	76812412	76822368	+	76812412;76820167	76820032;76822368	ES	ENSMUST00000041262.14	known	0.10	27	244.5	27	263;226	y	0.12	24	175.0	24	196;154	y	0.09	27	280.0	27	277;283	y	0.14	23	141.5	23	152;131	y	0.05	11	203.0	11	229;177	y	0.07	19	263.5	19	299;228	y	0.07	17	226.5	17	230;223	y	0.10	29	255.0	29	282;228	y	0.0386139762132636	2.64231303630326	up	ENSMUSG00000090258.8	Churc1	chr12	protein_coding	churchill domain containing 1
known_NIR_4126	chr12	80215790;80217022	80216957;80218503	-	80215790;80217540	80217460;80218503	MXE	ENSMUST00000021554.16	known	0.12	7.5	54.0	6;9	43;65	y	0.14	4.5	27.5	9;0	21;34	n	0.10	6.0	51.5	6;6	54;49	y	0.11	4.0	31.0	4;4	25;37	y	0.05	1.5	30.0	2;1	24;36	n	0.00	0.0	69.0	0;0	63;75	n	0.08	4.5	48.5	6;3	42;55	y	0.06	4.5	74.5	4;5	69;80	y	0.0178402678143292	3.67658012007223	up	ENSMUSG00000015143.16	Actn1	chr12	protein_coding	actinin, alpha 1
known_NIR_4135	chr12	80720068	80723906	+	80720068;80722708	80722623;80723906	ES	ENSMUST00000085245.7	known	0.00	0	54.5	0	65;44	n	0.00	0	41.0	0	41;41	n	0.00	0	41.5	0	53;30	n	0.00	0	40.0	0	45;35	n	0.07	2	28.0	2	30;26	y	0.07	5	68.5	5	75;62	y	0.11	5	39.0	5	42;36	y	0.08	4	45.5	4	57;34	y	0.00317866764575425	-8.71646397262368	down	ENSMUSG00000048833.10	Slc39a9	chr12	protein_coding	solute carrier family 39 (zinc transporter), member 9
known_NIR_4143	chr12	81184786	81197426	+	81184786	81197393	A3SS	ENSMUST00000110347.9	known	0.85	194	33	194	33	y	0.82	107	23	107	23	y	0.87	168	25	168	25	y	0.83	115	23	115	23	y	0.89	105	13	105	13	y	0.90	169	19	169	19	y	0.88	100	13	100	13	y	0.88	128	17	128	17	y	0.0196450179707787	-3.7263540204487	down	ENSMUSG00000021136.14	Smoc1	chr12	protein_coding	SPARC related  modular calcium binding 1
known_NIR_4148	chr12	81518945	81521361	-	81519125	81521361	A3SS	ENSMUST00000166664.2	known	0.12	20	153	20	153	y	0.10	12	107	12	107	y	0.16	31	159	31	159	y	0.18	22	103	22	103	y	0.19	26	108	26	108	y	0.22	35	127	35	127	y	0.19	29	125	29	125	y	0.18	30	140	30	140	y	0.0491063641754292	-2.72179412617966	down	ENSMUSG00000021139.18	Gm20498	chr12	protein_coding	predicted gene 20498
known_NIR_4219	chr12	84446186	84447604	-	84446186	84452180	A5SS	ENSMUST00000021662.12	known	0.58	94	68	94	68	y	0.52	22	20	22	20	y	0.57	77	58	77	58	y	0.55	21	17	21	17	y	0.65	61	33	61	33	y	0.67	141	68	141	68	y	0.68	77	37	77	37	y	0.64	77	43	77	43	y	0.000984127197643872	-6.53279567680169	down	ENSMUSG00000021236.17	Entpd5	chr12	protein_coding	ectonucleoside triphosphate diphosphohydrolase 5
known_NIR_4230	chr12	84820451	84821317	+	84820682	84821317	5pMXE	ENSMUST00000220726.2	known	0.48	80	85	80	85	y	0.58	44	32	44	32	y	0.47	85	96	85	96	y	0.56	48	38	48	38	y	0.43	54	71	54	71	y	0.49	99	101	99	101	y	0.39	54	86	54	86	y	0.40	55	83	55	83	y	0.0392920379478363	2.65619551103338	up	ENSMUSG00000021241.8	Isca2	chr12	protein_coding	iron-sulfur cluster assembly 2
known_NIR_4319	chr13	100138947;100146248	100146158;100151894	-	100138947	100151894	cassetteExon	ENSMUST00000221344.2	known	0.33	2.5	5	3;2	5	y	0.33	0.5	1	0;1	1	n	0.50	1.0	1	0;2	1	n	0.00	0.0	1	0;0	1	n	1.00	2.0	0	0;4	0	n	1.00	1.0	0	2;0	0	n	0.50	1.0	1	1;1	1	n	0.50	1.0	1	0;2	1	n	0.0454287709300454	-2.5802281578608	down	ENSMUSG00000021646.10	Mccc2	chr13	protein_coding	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
known_NIR_4351	chr13	103900514	103900804	-	103900514	103905825	A5SS	ENSMUST00000074616.7	known	0.54	14	12	14	12	y	0.57	8	6	8	6	y	0.69	20	9	20	9	y	0.36	4	7	4	7	y	0.25	3	9	3	9	y	0.21	4	15	4	15	y	0.46	6	7	6	7	y	0.30	7	16	7	16	y	0.0379178575347656	2.6853489569653	up	ENSMUSG00000032621.9	Srek1	chr13	protein_coding	splicing regulatory glutamine/lysine-rich protein 1
known_NIR_4357	chr13	103964531;103966839	103966696;103970006	-	103964531	103970006	cassetteExon	ENSMUST00000022222.12	known	0.16	17.0	90	10;24	90	y	0.13	6.5	43	8;5	43	y	0.16	14.0	72	10;18	72	y	0.17	8.5	43	6;11	43	y	0.27	19.5	52	19;20	52	y	0.24	24.0	75	18;30	75	y	0.26	15.5	44	17;14	44	y	0.16	14.5	76	7;22	76	y	0.0467728796005029	-2.93359338512578	down	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4358	chr13	103966839	103970006	-	103959914	103970006	A3SS	ENSMUST00000188997.7	known	0.45	24	29	24	29	y	0.24	5	16	5	16	y	0.40	18	27	18	27	y	0.55	11	9	11	9	y	0.69	20	9	20	9	y	0.54	30	26	30	26	y	0.58	14	10	14	10	y	0.61	22	14	22	14	y	0.0489415072883531	-2.70633286204647	down	ENSMUSG00000021709.15	Erbin	chr13	protein_coding	Erbb2 interacting protein
known_NIR_4359	chr13	104172231	104172962	-	104172231	104173362	A5SS	ENSMUST00000109315.5	known	0.25	26	80	26	80	y	0.20	9	37	9	37	y	0.30	31	72	31	72	y	0.30	21	48	21	48	y	0.18	10	47	10	47	y	0.19	19	82	19	82	y	0.18	16	72	16	72	y	0.16	12	64	12	64	y	0.0339173700307576	3.43451865147752	up	ENSMUSG00000021710.12	Nln	chr13	protein_coding	neurolysin (metallopeptidase M3 family)
known_NIR_4393	chr13	114954859	114957338	+	114954859;114955993	114955872;114957338	ES	ENSMUST00000166104.9	known	0.08	33	396.5	33	284;509	y	0.07	12	149.0	12	126;172	y	0.09	33	339.0	33	256;422	y	0.08	14	169.5	14	116;223	y	0.12	36	256.0	36	193;319	y	0.12	48	362.5	48	283;442	y	0.09	27	263.5	27	200;327	y	0.13	52	342.5	52	264;421	y	0.0193317139068523	-3.65563077506965	down	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4394	chr13	114954859	114957338	+	114955993	114957338	A5SS&ES	ENSMUST00000184672.8	known	0.06	33	509	33	509	y	0.07	12	172	12	172	y	0.07	33	422	33	422	y	0.06	14	223	14	223	y	0.10	36	319	36	319	y	0.10	48	442	48	442	y	0.08	27	327	27	327	y	0.11	52	421	52	421	y	0.00824791810192661	-4.695048270345	down	ENSMUSG00000015536.15	Mocs2	chr13	protein_coding	molybdenum cofactor synthesis 2
known_NIR_4439	chr13	12619350	12624457	+	12619350	12620584	3pMXE	ENSMUST00000221560.2	known	0.00	0	37	0	37	n	0.00	0	16	0	16	n	0.00	0	47	0	47	n	0.00	0	27	0	27	n	0.14	7	44	7	44	y	0.06	2	30	2	30	y	0.15	6	34	6	34	y	0.05	2	36	2	36	y	0.0314568678280041	-3.82546027838003	down	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
known_NIR_4440	chr13	12619350	12624457	+	12619350	12621716	3pMXE	ENSMUST00000071973.8	known	0.00	0	216	0	216	n	0.00	0	176	0	176	n	0.00	0	128	0	128	n	0.00	0	170	0	170	n	0.06	7	103	7	103	y	0.02	2	112	2	112	y	0.06	6	93	6	93	y	0.02	2	90	2	90	y	0.040519326353834	-3.46410161513775	down	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
known_NIR_4473	chr13	17859370	17869224	-	17847187	17869224	A3SS	ENSMUST00000068545.6	known	0.53	59	52	59	52	y	0.68	23	11	23	11	y	0.56	63	49	63	49	y	0.64	30	17	30	17	y	0.47	38	42	38	42	y	0.50	72	73	72	73	y	0.42	44	61	44	61	y	0.49	42	43	42	43	y	0.023015542403376	3.39529730298391	up	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
known_NIR_4490	chr13	21580744	21586562	-	21580744	21586842	A5SS	ENSMUST00000116434.11	known	0.32	11	23	11	23	y	0.30	3	7	3	7	y	0.27	6	16	6	16	y	0.24	4	13	4	13	y	0.20	3	12	3	12	y	0.18	3	14	3	14	y	0.16	3	16	3	16	y	0.17	5	24	5	24	y	0.00448361750502566	5.3923022056375	up	ENSMUSG00000021327.20	Zkscan3	chr13	protein_coding	zinc finger with KRAB and SCAN domains 3
known_NIR_4502	chr13	23999256;24001590	24001504;24003001	+	23999256	24003001	cassetteExon	ENSMUST00000141717.8	known	0.77	311.0	92	284;338	92	y	0.81	173.5	42	171;176	42	y	0.75	300.5	98	268;333	98	y	0.85	126.0	22	127;125	22	y	0.76	260.0	82	243;277	82	y	0.70	392.5	172	386;399	172	y	0.65	294.0	161	263;325	161	y	0.66	349.5	182	329;370	182	y	0.0223262721678518	3.07020654424081	up	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4503	chr13	24005058	24006278	+	24005092	24006278	A5SS	ENSMUST00000141717.8	known	0.57	348	267	348	267	y	0.56	173	135	173	135	y	0.61	472	305	472	305	y	0.54	137	116	137	116	y	0.63	360	211	360	211	y	0.61	572	361	572	361	y	0.61	439	283	439	283	y	0.61	502	324	502	324	y	0.0489906927564684	-2.89470384406204	down	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4515	chr13	24601407	24612812	+	24601407;24606674	24606583;24612812	ES	ENSMUST00000224953.2	known	0.03	2	68.0	2	69;67	y	0.03	1	30.5	1	27;34	n	0.04	2	52.0	2	57;47	y	0.02	1	48.0	1	58;38	n	0.00	0	52.0	0	57;47	n	0.02	2	81.0	2	99;63	y	0.00	0	43.0	0	42;44	n	0.01	1	66.5	1	74;59	n	0.0121941868183737	3.57623736407562	up	ENSMUSG00000016756.18	Cmah	chr13	protein_coding	cytidine monophospho-N-acetylneuraminic acid hydroxylase
known_NIR_4530	chr13	25064904;25066662	25066524;25067724	+	25064904	25067724	cassetteExon	ENSMUST00000141572.8	known	1.00	7.5	0	8;7	0	n	1.00	1.0	0	1;1	0	n	1.00	5.5	0	8;3	0	n	-	-	-	-	-	-	0.64	3.5	2	2;5	2	n	0.76	12.5	4	9;16	4	y	0.88	7.5	1	6;9	1	n	0.91	10.0	1	8;12	1	n	0.0463460512186156	3.28228563881609	up	ENSMUSG00000006711.16	D130043K22Rik	chr13	protein_coding	RIKEN cDNA D130043K22 gene
known_NIR_4544	chr13	34115629	34119552	-	34115629	34180226	A5SS	ENSMUST00000076532.14	known	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.29	4	10	4	10	y	0.10	1	9	1	9	n	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.0262257147692119	4.10146613683877	up	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4546	chr13	34115629	34119602	-	34115629	34119552	A5SS	ENSMUST00000171252.8	known	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.60	6	4	6	4	y	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.0201389618476639	-4.52903909476958	down	ENSMUSG00000060147.16	Serpinb6a	chr13	protein_coding	serine (or cysteine) peptidase inhibitor, clade B, member 6a
known_NIR_4622	chr13	39127142	39138085	-	39127142;39128630	39128476;39138085	ES	ENSMUST00000021870.12	known	0.25	14	41.5	14	37;46	y	0.11	4	32.5	4	42;23	y	0.28	12	31.0	12	25;37	y	0.29	11	26.5	11	28;25	y	0.46	14	16.5	14	17;16	y	0.47	14	16.0	14	17;15	y	0.32	6	12.5	6	12;13	y	0.31	8	17.5	8	17;18	y	0.0398205992883747	-2.61668464433328	down	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4623	chr13	39127142	39138085	-	39128630	39138085	3pMXE	ENSMUST00000225331.2	known	0.23	14	46	14	46	y	0.15	4	23	4	23	y	0.24	12	37	12	37	y	0.31	11	25	11	25	y	0.47	14	16	14	16	y	0.48	14	15	14	15	y	0.32	6	13	6	13	y	0.31	8	18	8	18	y	0.0321634062114874	-2.86609790034041	down	ENSMUSG00000021432.16	Slc35b3	chr13	protein_coding	solute carrier family 35, member B3
known_NIR_4654	chr13	4486446	4497032	+	4486446	4488489	A3SS&ES	ENSMUST00000021630.15	known	0.00	0	2473	0	2473	n	0.00	0	78	0	78	n	0.01	36	2592	36	2592	y	0.00	0	306	0	306	n	0.01	38	2783	38	2783	y	0.02	65	3839	65	3839	y	0.02	45	2832	45	2832	y	0.01	34	2986	34	2986	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
known_NIR_4665	chr13	4657202	4657390	-	4652796	4657390	A3SS	ENSMUST00000091848.7	known	0.00	0	149	0	149	n	0.00	0	57	0	57	n	0.01	2	137	2	137	y	0.00	0	61	0	61	n	0.02	2	112	2	112	y	0.01	1	162	1	162	n	0.01	1	116	1	116	n	0.01	1	124	1	124	n	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000045410.19	Akr1e1	chr13	protein_coding	aldo-keto reductase family 1, member E1
known_NIR_4688	chr13	49361622	49369230	-	49361622	49369413	A5SS	ENSMUST00000048946.7	known	0.42	14	19	14	19	y	0.36	8	14	8	14	y	0.49	20	21	20	21	y	0.30	8	19	8	19	y	0.56	14	11	14	11	y	0.58	21	15	21	15	y	0.62	15	9	15	9	y	0.52	16	15	16	15	y	0.0144077139997796	-3.88301000512493	down	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
known_NIR_4727	chr13	54831902	54832151	-	54831963	54832151	A3SS	ENSMUST00000125871.8	known	0.14	3	19	3	19	y	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.08	1	11	1	11	n	0.33	3	6	3	6	n	0.15	3	17	3	17	y	0.44	8	10	8	10	y	0.38	8	13	8	13	y	0.0319279583649288	-3.28565656048487	down	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4777	chr13	56243454	56243937	-	56237670	56243937	A3SS	ENSMUST00000016081.13	known	0.14	12	74	12	74	y	0.19	15	66	15	66	y	0.10	11	104	11	104	y	0.12	9	64	9	64	y	0.05	6	111	6	111	y	0.09	14	145	14	145	y	0.07	7	94	7	94	y	0.09	11	118	11	118	y	0.0394530499292657	2.89966752385147	up	ENSMUSG00000015937.16	Macroh2a1	chr13	protein_coding	macroH2A.1 histone
known_NIR_4784	chr13	58308052	58311247	+	58308052;58310695	58310652;58311247	ES	ENSMUST00000051490.15	known	0.59	90	63.0	90	64;62	y	0.61	39	24.5	39	20;29	y	0.55	100	81.0	100	77;85	y	0.72	59	22.5	59	21;24	y	0.50	64	65.0	64	73;57	y	0.47	88	98.0	88	91;105	y	0.50	85	83.5	85	85;82	y	0.49	86	90.0	86	85;95	y	0.0368216192687101	3.44102712548164	up	ENSMUSG00000050002.15	Idnk	chr13	protein_coding	idnK gluconokinase homolog (E. coli)
known_NIR_4795	chr13	58544713	58546970	-	58544713	58545567	5pMXE	ENSMUST00000177497.8	known	0.01	5	560	5	560	y	0.00	1	303	1	303	n	0.00	2	487	2	487	y	0.00	0	345	0	345	n	0.02	5	308	5	308	y	0.01	3	506	3	506	y	0.02	7	312	7	312	y	0.01	7	507	7	507	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4796	chr13	58544713	58546970	-	58544713;58545610	58545567;58546970	ES	ENSMUST00000116403.9	known	0.01	5	551.5	5	560;543	y	0.00	1	287.5	1	303;272	n	0.00	2	464.5	2	487;442	y	0.00	0	333.5	0	345;322	n	0.02	5	290.5	5	308;273	y	0.01	3	484.0	3	506;462	y	0.02	7	303.0	7	312;294	y	0.01	7	475.5	7	507;444	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4797	chr13	58544713	58546970	-	58545610	58546970	3pMXE	ENSMUST00000176558.2	known	0.01	5	543	5	543	y	0.00	1	272	1	272	n	0.00	2	442	2	442	y	0.00	0	322	0	322	n	0.02	5	273	5	273	y	0.01	3	462	3	462	y	0.02	7	294	7	294	y	0.02	7	444	7	444	y	0.00542395034130874	-4.24264068711929	down	ENSMUSG00000021546.19	Hnrnpk	chr13	protein_coding	heterogeneous nuclear ribonucleoprotein K
known_NIR_4890	chr13	64293494	64297884	-	64293494	64300203	A5SS	ENSMUST00000152644.9	known	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.00	0	8	0	8	n	0.00	0	6	0	6	n	0.44	4	5	4	5	n	0.22	2	7	2	7	n	0.62	5	3	5	3	n	0.50	6	6	6	6	y	0.0136641991366243	-3.50783565111135	down	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
known_NIR_4891	chr13	64293494	64297884	-	64293494	64300414	A5SS	ENSMUST00000059817.12	known	0.50	4	4	4	4	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	n	1.00	2	0	2	0	n	0.83	5	1	5	1	n	0.50	6	6	6	6	y	0.0327161846971191	-3.26187665861404	down	ENSMUSG00000044934.14	Zfp367	chr13	protein_coding	zinc finger protein 367
known_NIR_4919	chr13	67079371	67080999	-	67078287	67080999	A3SS	ENSMUST00000021991.11	known	0.29	14	35	14	35	y	0.43	16	21	16	21	y	0.19	7	29	7	29	y	0.38	13	21	13	21	y	0.17	7	35	7	35	y	0.15	11	64	11	64	y	0.00	0	23	0	23	n	0.12	5	37	5	37	y	0.019696812829594	3.26360316998033	up	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4923	chr13	67111535;67112272	67112138;67114454	+	67111535	67114454	cassetteExon	ENSMUST00000021990.4	known	0.02	3.0	132	3;3	132	y	0.01	1.0	73	0;2	73	n	0.01	1.5	165	0;3	165	n	0.01	1.0	92	2;0	92	n	0.00	0.0	107	0;0	107	n	0.00	0.0	213	0;0	213	n	0.00	0.5	122	0;1	122	n	0.00	0.0	141	0;0	141	n	0.0153924380733023	5	up	ENSMUSG00000021518.5	Ptdss1	chr13	protein_coding	phosphatidylserine synthase 1
known_NIR_4929	chr13	67591453;67595551	67595483;67596940	-	67591453	67596940	cassetteExon	ENSMUST00000225778.2	known	0.07	4.5	59	7;2	59	y	0.08	1.5	17	1;2	17	n	0.10	4.0	36	6;2	36	y	0.06	1.5	24	1;2	24	n	0.01	0.5	37	1;0	37	n	0.02	1.0	48	0;2	48	n	0.03	1.0	28	0;2	28	n	0.07	4.0	50	5;3	50	y	0.0338312753311336	2.87006761864476	up	ENSMUSG00000069206.15	Zfp874a	chr13	protein_coding	zinc finger protein 874a
known_NIR_4931	chr13	67642848	67648021	-	67642848	67648490	A5SS	ENSMUST00000076123.12	known	0.07	1	13	1	13	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	5	0	5	n	0.29	2	5	2	5	n	0.45	5	6	5	6	y	0.80	4	1	4	1	n	0.25	1	3	1	3	n	0.0492114279089483	-2.84058397970397	down	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
known_NIR_4933	chr13	67642848;67648036	67648021;67648530	-	67642848	67648530	cassetteExon	ENSMUST00000171518.8	known	0.09	0.5	5	1;0	5	n	0.00	0.0	1	0;0	1	n	0.33	0.5	1	1;0	1	n	0.00	0.0	2	0;0	2	n	0.25	1.0	3	2;0	3	n	0.54	3.5	3	5;2	3	y	1.00	2.0	0	4;0	0	n	1.00	0.5	0	1;0	0	n	0.0410785293394676	-2.95949578689448	down	ENSMUSG00000071291.11	Zfp58	chr13	protein_coding	zinc finger protein 58
known_NIR_4948	chr13	73475588	73476397	-	73475588	73476458	A5SS	ENSMUST00000223293.2	known	0.06	46	772	46	772	y	0.06	26	432	26	432	y	0.08	83	916	83	916	y	0.04	16	435	16	435	y	0.09	64	681	64	681	y	0.07	72	963	72	963	y	0.09	84	831	84	831	y	0.09	76	776	76	776	y	0.0478566196408535	-2.61116483933547	down	ENSMUSG00000021606.9	Ndufs6	chr13	protein_coding	NADH:ubiquinone oxidoreductase core subunit S6
known_NIR_4971	chr13	74631062;74632141	74632018;74641969	-	74631062	74641969	cassetteExon	ENSMUST00000202645.4	known	0.71	36.0	15	28;44	15	y	0.70	16.0	7	9;23	7	y	0.76	35.0	11	20;50	11	y	0.78	25.0	7	9;41	7	y	0.67	22.5	11	14;31	11	y	0.68	31.5	15	14;49	15	y	0.62	19.5	12	8;31	12	y	0.68	19.5	9	9;30	9	y	0.0229733350856559	3.11644512478999	up	ENSMUSG00000069208.10	Zfp825	chr13	protein_coding	zinc finger protein 825
known_NIR_5000	chr13	84370553	84405880	+	84370553;84399452	84399349;84405880	ES	ENSMUST00000224501.2	known	0.23	5	16.5	5	13;20	y	0.27	3	8.0	3	7;9	y	0.17	2	9.5	2	8;11	y	0.25	2	6.0	2	7;5	y	0.00	0	6.5	0	6;7	n	0.17	2	10.0	2	10;10	y	0.13	1	6.5	1	7;6	n	0.12	1	7.5	1	9;6	n	0.033392007673239	2.93948175626108	up	ENSMUSG00000035762.12	Tmem161b	chr13	protein_coding	transmembrane protein 161B
known_NIR_5006	chr13	85345680	85350560	+	85345680	85350452	A3SS	ENSMUST00000022030.11	known	0.12	8	60	8	60	y	0.15	4	23	4	23	y	0.13	7	45	7	45	y	0.12	3	21	3	21	y	0.06	2	34	2	34	y	0.10	7	62	7	62	y	0.11	4	32	4	32	y	0.05	3	55	3	55	y	0.0340189121683635	3.06186217847897	up	ENSMUSG00000021548.11	Ccnh	chr13	protein_coding	cyclin H
known_NIR_5009	chr13	8911301	8920673	-	8911301	8921519	A5SS	ENSMUST00000054251.13	known	0.70	7	3	7	3	y	0.57	4	3	4	3	n	0.50	3	3	3	3	n	1.00	1	0	1	0	n	0.33	2	4	2	4	n	0.38	3	5	3	5	n	0.00	0	1	0	1	n	0.45	5	6	5	6	y	0.0358018448354664	2.70305244682777	up	ENSMUSG00000021147.18	Wdr37	chr13	protein_coding	WD repeat domain 37
known_NIR_5034	chr13	93311226	93312027	-	93311214	93312027	A3SS	ENSMUST00000225868.2	known	0.69	44	20	44	20	y	0.61	14	9	14	9	y	0.68	44	21	44	21	y	0.66	19	10	19	10	y	0.56	35	27	35	27	y	0.61	59	37	59	37	y	0.46	26	31	26	31	y	0.58	45	33	45	33	y	0.0367714850653204	2.90125816462178	up	ENSMUSG00000042167.7	Tent2	chr13	protein_coding	terminal nucleotidyltransferase 2
known_NIR_5131	chr14	121823754	121828723	-	121823754	121829224	A5SS	ENSMUST00000211803.2	known	0.17	1	5	1	5	n	0.22	2	7	2	7	n	0.31	5	11	5	11	y	0.29	2	5	2	5	n	0.00	0	5	0	5	n	0.18	2	9	2	9	y	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.0436198210420957	2.66821121742847	up	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5132	chr14	121823754;121828766	121828723;121831748	-	121823754;121829360	121829224;121831748	MXE	ENSMUST00000040700.9	known	0.29	2.0	5.0	1;3	5;5	n	0.20	1.0	4.0	2;0	7;1	n	0.29	3.5	8.5	5;2	11;6	y	0.25	1.0	3.0	2;0	5;1	n	0.00	0.0	3.5	0;0	5;2	n	0.11	1.0	8.5	2;0	9;8	n	0.17	0.5	2.5	1;0	5;0	n	0.00	0.0	3.5	0;0	5;2	n	0.0135670501964999	3.96202907846531	up	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5134	chr14	121835168	121837100	-	121835165	121837100	A3SS	ENSMUST00000212376.3	known	0.25	2	6	2	6	n	0.00	0	2	0	2	n	0.31	4	9	4	9	y	0.25	1	3	1	3	n	0.50	3	3	3	3	n	0.47	7	8	7	8	y	0.67	2	1	2	1	n	0.59	10	7	10	7	y	0.00709863188122639	-4.30105598298922	down	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5138	chr14	123150704;123161089	123161034;123163542	+	123150704	123163542	cassetteExon	ENSMUST00000100291.3	known	0.85	11.5	2	11;12	2	y	1.00	3.5	0	3;4	0	n	0.90	9.0	1	7;11	1	n	0.75	3.0	1	2;4	1	n	0.67	4.0	2	5;3	2	y	0.79	7.5	2	8;7	2	y	0.75	9.0	3	8;10	3	y	0.60	7.5	5	5;10	5	y	0.0438003249543361	2.57207363046575	up	ENSMUSG00000075463.4	4930594M22Rik	chr14	lncRNA	RIKEN cDNA 4930594M22 gene
known_NIR_5139	chr14	14211006	14212838	+	14210951	14212838	A5SS	ENSMUST00000164598.8	known	0.05	21	417	21	417	y	0.06	22	354	22	354	y	0.05	13	248	13	248	y	0.04	15	364	15	364	y	0.03	6	177	6	177	y	0.01	4	293	4	293	y	0.01	2	176	2	176	y	0.03	6	197	6	197	y	0.00686878756026516	4.24264068711929	up	ENSMUSG00000021751.14	Acox2	chr14	protein_coding	acyl-Coenzyme A oxidase 2, branched chain
known_NIR_5152	chr14	20344860;20347699	20347583;20350655	+	20344860	20350655	cassetteExon	ENSMUST00000022343.6	known	0.26	4.5	13	1;8	13	n	0.29	2.5	6	0;5	6	n	0.21	6.5	24	0;13	24	n	0.22	2.5	9	0;5	9	n	0.09	2.0	21	2;2	21	y	0.13	1.5	10	0;3	10	n	0.17	4.0	19	0;8	19	n	0.09	2.0	21	0;4	21	n	0.00334856070959807	4.69668218313862	up	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5155	chr14	20344860;20350747	20350655;20354021	+	20344860;20345334	20345156;20354021	MXE	ENSMUST00000225722.2	known	0.78	21.0	6.0	13;29	11;1	n	0.72	6.5	2.5	6;7	5;0	n	0.85	30.0	5.5	24;36	11;0	n	0.76	8.0	2.5	9;7	4;1	n	0.91	24.0	2.5	21;27	5;0	n	0.80	20.5	5.0	10;31	10;0	n	0.90	18.0	2.0	19;17	3;1	n	0.88	29.5	4.0	21;38	8;0	n	0.042402770850646	-2.57368475361867	down	ENSMUSG00000021809.11	Nudt13	chr14	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 13
known_NIR_5173	chr14	20408208;20409984	20409823;20424398	+	20408208;20413518	20413331;20424398	MXE	ENSMUST00000051915.7	known	0.55	23.0	19.0	44;2	7;31	y	0.46	12.5	14.5	25;0	5;24	n	0.46	26.5	31.0	51;2	9;53	y	0.54	11.0	9.5	20;2	1;18	n	0.34	13.5	26.5	26;1	13;40	n	0.33	19.5	39.0	35;4	17;61	y	0.37	14.5	25.0	29;0	9;41	n	0.42	21.5	29.5	43;0	9;50	n	0.00545074881395641	4.31676926878399	up	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5191	chr14	20724805	20726026	+	20724456	20726026	A5SS	ENSMUST00000048657.10	known	0.41	29	41	29	41	y	0.34	14	27	14	27	y	0.35	17	31	17	31	y	0.28	10	26	10	26	y	0.45	13	16	13	16	y	0.58	31	22	31	22	y	0.44	12	15	12	15	y	0.51	24	23	24	23	y	0.0122869505339745	-3.58568582800318	down	ENSMUSG00000039367.12	Sec24c	chr14	protein_coding	Sec24 related gene family, member C (S. cerevisiae)
known_NIR_5197	chr14	20753265	20753344	+	20753265	20753358	A3SS	ENSMUST00000071215.5	known	0.05	11	229	11	229	y	0.06	5	84	5	84	y	0.04	11	251	11	251	y	0.07	9	113	9	113	y	0.07	14	178	14	178	y	0.09	26	272	26	272	y	0.08	22	267	22	267	y	0.08	21	239	21	239	y	0.0216793077491661	-3.27326835353989	down	ENSMUSG00000063787.5	Chchd1	chr14	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 1
known_NIR_5219	chr14	21102768	21142435	+	21102768	21103790	3pMXE	ENSMUST00000223558.2	known	0.77	347	102	347	102	y	0.73	178	65	178	65	y	0.77	306	93	306	93	y	0.77	212	64	212	64	y	0.84	247	47	247	47	y	0.83	325	65	325	65	y	0.79	238	64	238	64	y	0.79	306	82	306	82	y	0.0210222895534833	-3.17792961552351	down	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5222	chr14	21102768;21104084	21103790;21142435	+	21102768	21142435	cassetteExon	ENSMUST00000045376.11	known	0.14	54.5	347	102;7	347	y	0.16	34.5	178	65;4	178	y	0.14	51.0	306	93;9	306	y	0.14	34.5	212	64;5	212	y	0.10	27.5	247	47;8	247	y	0.10	35.5	325	65;6	325	y	0.13	35.0	238	64;6	238	y	0.13	45.5	306	82;9	306	y	0.0316858628534035	3	up	ENSMUSG00000039197.11	Adk	chr14	protein_coding	adenosine kinase
known_NIR_5280	chr14	26174755;26180615	26180565;26181197	-	26174755	26181197	cassetteExon	ENSMUST00000112331.9	known	0.40	4.0	6	4;4	6	y	0.64	3.5	2	3;4	2	n	0.65	7.5	4	10;5	4	y	0.38	2.5	4	1;4	4	n	0.83	5.0	1	6;4	1	n	0.62	8.0	5	8;8	5	y	0.88	7.0	1	8;6	1	n	0.69	4.5	2	5;4	2	y	0.0485676722597192	-2.49224537163367	down	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5306	chr14	30618727	30619814	+	30618727;30619530	30619480;30619814	ES	ENSMUST00000120269.11	known	0.12	2849	20686.5	2849	11679;29694	y	0.10	1666	14822.5	1666	8369;21276	y	0.14	3038	18862.0	3038	10832;26892	y	0.12	2069	15819.5	2069	9233;22406	y	0.08	700	7745.0	700	4389;11101	y	0.11	1669	14197.0	1669	8159;20235	y	0.09	864	8940.0	864	4994;12886	y	0.08	1144	12408.0	1144	7025;17791	y	0.0327937176457763	2.77746029931765	up	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5307	chr14	30618727	30619814	+	30618727;30619530	30619483;30619814	ES	ENSMUST00000078490.14	known	0.11	2849	23105.5	2849	16517;29694	y	0.09	1666	16638.0	1666	12000;21276	y	0.13	3038	21144.5	3038	15397;26892	y	0.10	2069	17638.5	2069	12871;22406	y	0.07	700	8687.0	700	6273;11101	y	0.09	1669	15920.5	1669	11606;20235	y	0.08	864	10101.5	864	7317;12886	y	0.08	1144	14013.0	1144	10235;17791	y	0.0401694278344841	2.90548799087456	up	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5381	chr14	31818585	31821406	+	31818585	31821346	A3SS	ENSMUST00000022462.14	known	0.07	4	57	4	57	y	0.04	2	45	2	45	y	0.02	1	41	1	41	n	0.09	4	43	4	43	y	0.00	0	37	0	37	n	0.00	0	72	0	72	n	0.00	0	47	0	47	n	0.00	0	45	0	45	n	0.0384193972639982	3.53797136496472	up	ENSMUSG00000021906.15	Oxnad1	chr14	protein_coding	oxidoreductase NAD-binding domain containing 1
known_NIR_5404	chr14	33990909	33995444	-	33990909;33991493	33991428;33995444	ES	ENSMUST00000228337.2	known	0.62	12	7.5	12	10;5	y	0.65	16	8.5	16	14;3	y	0.76	11	3.5	11	3;4	y	0.62	8	5.0	8	5;5	y	1.00	4	0.0	4	0;0	n	0.77	5	1.5	5	3;0	n	0.80	4	1.0	4	2;0	n	1.00	2	0.0	2	0;0	n	0.0256751907641986	-3.25404732909906	down	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5405	chr14	33990909	34030997	-	33990909;33991493	33991428;34030997	ES	ENSMUST00000111917.3	known	0.40	4	6.0	4	10;2	y	0.38	5	8.0	5	14;2	y	0.67	6	3.0	6	3;3	y	0.62	4	2.5	4	5;0	n	1.00	7	0.0	7	0;0	n	0.84	13	2.5	13	3;2	y	0.67	2	1.0	2	2;0	n	1.00	8	0.0	8	0;0	n	0.0160468794580965	-3.3217013552665	down	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5407	chr14	33990909;33995533	33995444;34030997	-	33990909	34030997	cassetteExon	ENSMUST00000227375.2	known	0.62	6.5	4	12;1	4	n	0.62	8.0	5	16;0	5	n	0.60	9.0	6	11;7	6	y	0.53	4.5	4	8;1	4	n	0.22	2.0	7	4;0	7	n	0.16	2.5	13	5;0	13	n	0.50	2.0	2	4;0	2	n	0.20	2.0	8	2;2	8	y	0.0214405615613012	4.00332927259893	up	ENSMUSG00000041471.10	Shld2	chr14	protein_coding	shieldin complex subunit 2
known_NIR_5464	chr14	4198873	4199236	+	4198477	4199236	A5SS	ENSMUST00000147121.2	known	0.90	52	6	52	6	y	0.95	38	2	38	2	y	0.83	39	8	39	8	y	0.86	24	4	24	4	y	0.83	34	7	34	7	y	0.82	31	7	31	7	y	0.76	38	12	38	12	y	0.69	33	15	33	15	y	0.039436901101925	2.65490935614013	up	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5473	chr14	45567640	45568287	+	45567389	45568287	A5SS	ENSMUST00000022380.9	known	0.01	2	292	2	292	y	0.01	2	138	2	138	y	0.00	0	258	0	258	n	0.01	2	148	2	148	y	0.02	5	224	5	224	y	0.01	3	297	3	297	y	0.03	6	177	6	177	y	0.02	7	313	7	313	y	0.0478566196408534	-2.61116483933547	down	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5492	chr14	47710174;47738327	47738251;47766632	+	47710174	47766632	cassetteExon	ENSMUST00000043112.9	known	0.56	2.5	2	3;2	2	n	-	-	-	-	-	-	1.00	1.0	0	1;1	0	n	0.60	3.0	2	4;2	2	n	0.43	1.5	2	2;1	2	n	0.14	0.5	3	1;0	3	n	0.27	1.5	4	2;1	4	n	0.00	0.0	3	0;0	3	n	0.0436062873718011	3.03970177091896	up	ENSMUSG00000037536.15	Fbxo34	chr14	protein_coding	F-box protein 34
known_NIR_5497	chr14	47941734	47943220	+	47941734;47941945	47941877;47943220	ES	ENSMUST00000187839.8	known	0.33	6	12.0	6	11;13	y	0.42	4	5.5	4	7;4	y	0.40	12	18.0	12	18;18	y	0.56	12	9.5	12	9;10	y	0.60	14	9.5	14	6;13	y	0.64	16	9.0	16	11;7	y	0.65	12	6.5	12	10;3	y	0.50	14	14.0	14	15;13	y	0.0317284031942714	-2.87523642599414	down	ENSMUSG00000021843.18	Ktn1	chr14	protein_coding	kinectin 1
known_NIR_5528	chr14	51162491	51162670	+	51162486	51162670	A5SS	ENSMUST00000049411.12	known	0.08	7	79	7	79	y	0.15	10	56	10	56	y	0.13	10	67	10	67	y	0.15	8	45	8	45	y	0.03	2	65	2	65	y	0.05	4	82	4	82	y	0.05	4	84	4	84	y	0.06	5	85	5	85	y	0.0115761380241713	4.5254833995939	up	ENSMUSG00000035960.15	Apex1	chr14	protein_coding	apurinic/apyrimidinic endonuclease 1
known_NIR_5542	chr14	52126293	52126985	+	52126293;52126674	52126604;52126985	ES	ENSMUST00000047899.13	known	0.04	1	23.0	1	26;20	n	0.00	0	15.0	0	16;14	n	0.07	1	14.0	1	10;18	n	0.00	0	9.0	0	10;8	n	0.11	2	15.5	2	18;13	y	0.05	2	39.0	2	38;40	y	0.10	2	18.5	2	18;19	y	0.08	3	32.5	3	34;31	y	0.039338179913159	-2.66769412194335	down	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5547	chr14	52149003	52149412	-	52149003	52150780	A5SS	ENSMUST00000004673.15	known	0.05	36	670	36	670	y	0.01	2	183	2	183	y	0.05	32	559	32	559	y	0.02	4	241	4	241	y	0.08	31	372	31	372	y	0.06	39	591	39	591	y	0.08	36	404	36	404	y	0.08	41	500	41	500	y	0.0178851149278323	-3.70970413401187	down	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
known_NIR_5651	chr14	55798876	55800349	+	55798899	55800349	A5SS	ENSMUST00000117236.8	known	0.13	79	531	79	531	y	0.14	38	240	38	240	y	0.18	108	497	108	497	y	0.10	34	290	34	290	y	0.17	73	350	73	350	y	0.17	130	635	130	635	y	0.22	107	389	107	389	y	0.20	134	549	134	549	y	0.046571089257177	-2.55288883019029	down	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
known_NIR_5677	chr14	55880412	55881054	-	55880412	55880839	A5SS	ENSMUST00000122358.8	known	0.45	9	11	9	11	y	0.64	9	5	9	5	y	0.50	8	8	8	8	y	0.46	6	7	6	7	y	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.18	2	9	2	9	y	0.43	6	8	6	8	y	0.0436740223254912	2.58734932471774	up	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
known_NIR_5694	chr14	56848794	56851142	-	56848794;56849196	56849130;56851142	ES	ENSMUST00000160334.8	known	0.77	68	20.0	68	21;19	y	0.74	28	10.0	28	12;8	y	0.78	48	13.5	48	15;12	y	0.81	59	14.0	59	14;14	y	0.89	29	3.5	29	3;4	y	0.82	30	6.5	30	7;6	y	0.87	29	4.5	29	4;5	y	0.80	37	9.0	37	9;9	y	0.0379802365813541	-2.74562589193457	down	ENSMUSG00000090038.8	Gm16573	chr14	lncRNA	predicted gene 16573
known_NIR_5707	chr14	58074103	58076547	-	58074103;58075124	58075048;58076547	ES	ENSMUST00000089473.5	known	0.12	4	30.0	4	31;29	y	0.09	2	19.5	2	21;18	y	0.22	6	21.0	6	19;23	y	0.15	3	17.5	3	18;17	y	0.00	0	23.5	0	27;20	n	0.03	1	28.0	1	31;25	n	0.00	0	20.5	0	18;23	n	0.07	2	26.5	2	26;27	y	0.0145154795007328	3.70328039909021	up	ENSMUSG00000021969.9	Zdhhc20	chr14	protein_coding	zinc finger, DHHC domain containing 20
known_NIR_5738	chr14	61861931;61862811	61862669;61869886	-	61861931	61869886	cassetteExon	ENSMUST00000183066.8	known	0.08	0.5	6	0;1	6	n	-	-	-	-	-	-	0.33	1.0	2	0;2	2	n	0.11	0.5	4	0;1	4	n	0.38	3.0	5	2;4	5	y	0.50	3.0	3	0;6	3	n	0.60	3.0	2	3;3	2	n	0.33	2.0	4	1;3	4	n	0.0470024635783803	-2.80563216752258	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5739	chr14	61862811	61869886	-	61841255	61869886	A3SS	ENSMUST00000182768.8	known	0.06	1	17	1	17	n	0.00	0	5	0	5	n	0.10	2	19	2	19	y	0.17	1	5	1	5	n	0.21	4	15	4	15	y	0.21	6	23	6	23	y	0.23	3	10	3	10	y	0.12	3	23	3	23	y	0.0491236231654402	-2.53752327875902	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
known_NIR_5759	chr14	65054585	65059503	-	65054585	65063050	A5SS	ENSMUST00000022544.14	known	0.09	1	10	1	10	n	0.20	1	4	1	4	n	0.25	3	9	3	9	y	0.27	3	8	3	8	y	0.07	1	14	1	14	n	0.08	1	11	1	11	n	0.00	0	13	0	13	n	0.06	1	17	1	17	n	0.025760944203924	3.40046602172147	up	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5760	chr14	65061147	65063050	-	65054585	65063050	A3SS	ENSMUST00000022544.14	known	0.55	12	10	12	10	y	0.71	10	4	10	4	y	0.55	11	9	11	9	y	0.50	8	8	8	8	y	0.22	4	14	4	14	y	0.45	9	11	9	11	y	0.28	5	13	5	13	y	0.26	6	17	6	17	y	0.00705514957199482	4.02738614266017	up	ENSMUSG00000021972.15	Hmbox1	chr14	protein_coding	homeobox containing 1
known_NIR_5768	chr14	66207348	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.05	260	4786	260	4786	y	0.05	129	2598	129	2598	y	0.07	272	3905	272	3905	y	0.06	178	2995	178	2995	y	0.07	186	2653	186	2653	y	0.08	337	3960	337	3960	y	0.08	203	2449	203	2449	y	0.07	279	3453	279	3453	y	0.0264653665333921	-3.13049516849971	down	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5793	chr14	69610570;69659448	69659347;69740431	-	69610570	69740431	cassetteExon	ENSMUST00000183917.8	known	0.80	8.0	2	1;15	2	n	1.00	4.5	0	0;9	0	n	0.67	2.0	1	0;4	1	n	1.00	2.0	0	0;4	0	n	0.33	0.5	1	0;1	1	n	0.45	2.5	3	1;4	3	n	0.67	6.0	3	3;9	3	y	0.56	2.5	2	1;4	2	n	0.0156919976264591	3.34888224283779	up	ENSMUSG00000093954.9	Gm16867	chr14	protein_coding	predicted gene, 16867
known_NIR_5837	chr14	73392334	73399380	+	73392334;73395885	73395828;73399380	ES	ENSMUST00000163339.8	known	0.96	56	2.5	56	4;1	n	0.98	22	0.5	22	0;1	n	0.91	46	4.5	46	3;6	y	0.92	30	2.5	30	3;2	y	0.88	40	5.5	40	5;6	y	0.90	49	5.5	49	7;4	y	0.88	32	4.5	32	4;5	y	0.91	36	3.5	36	4;3	y	0.0485630877002623	2.75589127304775	up	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5886	chr14	79875614	79879336	-	79875617	79879336	A3SS	ENSMUST00000165835.8	known	0.00	0	9	0	9	n	0.00	0	1	0	1	n	0.08	1	11	1	11	n	0.00	0	2	0	2	n	0.19	5	22	5	22	y	0.11	4	31	4	31	y	0.09	4	43	4	43	y	0.27	4	11	4	11	y	0.0301656462218483	-3.17045624929367	down	ENSMUSG00000022025.14	Cnmd	chr14	protein_coding	chondromodulin
known_NIR_5902	chr14	8512701	8515107	+	8508578	8515107	A5SS	ENSMUST00000065865.10	known	0.29	23	57	23	57	y	0.13	5	34	5	34	y	0.24	21	65	21	65	y	0.31	15	33	15	33	y	0.37	24	41	24	41	y	0.42	35	48	35	48	y	0.44	28	36	28	36	y	0.40	31	46	31	46	y	0.0202061775643672	-3.84049940319149	down	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5905	chr14	8512701	8515107	+	8512303	8515107	A5SS	ENSMUST00000225202.2	known	0.61	23	15	23	15	y	0.36	5	9	5	9	y	0.60	21	14	21	14	y	0.45	15	18	15	18	y	0.86	24	4	24	4	y	0.78	35	10	35	10	y	0.70	28	12	28	12	y	0.72	31	12	31	12	y	0.0148000943967273	-3.68927340475514	down	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5921	chr15	100367717	100370430	+	100367717;100369656	100369541;100370430	ES	ENSMUST00000037001.10	known	0.05	4	75.5	4	66;85	y	0.08	4	45.5	4	39;52	y	0.09	6	62.0	6	67;57	y	0.06	2	30.5	2	30;31	y	0.05	2	37.5	2	36;39	y	0.01	1	76.5	1	74;79	n	0.02	1	42.0	1	40;44	n	0.00	0	75.0	0	71;79	n	0.0128569226587943	3.53553390593274	up	ENSMUSG00000037353.10	Letmd1	chr15	protein_coding	LETM1 domain containing 1
known_NIR_5931	chr15	100573354	100576884	-	100573354	100579024	A5SS	ENSMUST00000230572.2	known	0.72	56	22	56	22	y	0.71	24	10	24	10	y	0.60	56	38	56	38	y	0.85	41	7	41	7	y	0.41	32	47	32	47	y	0.50	39	39	39	39	y	0.51	47	46	47	46	y	0.61	33	21	33	21	y	0.0188104144994021	3.24452690425629	up	ENSMUSG00000023031.9	Cela1	chr15	protein_coding	chymotrypsin-like elastase family, member 1
known_NIR_5939	chr15	102086221	102087216	-	102086221;102087051	102086962;102087216	ES	ENSMUST00000023805.3	known	0.02	33	1858.0	33	1798;1918	y	0.03	19	608.0	19	607;609	y	0.01	12	1292.0	12	1207;1377	y	0.02	17	665.5	17	650;681	y	0.01	5	946.5	5	914;979	y	0.01	11	1680.0	11	1658;1702	y	0.01	9	962.0	9	960;964	y	0.00	8	1689.0	8	1667;1711	y	0.0478566196408534	2.61116483933547	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5940	chr15	102086221	102087216	-	102087051	102087216	3pMXE	ENSMUST00000230253.2	known	0.02	33	1918	33	1918	y	0.03	19	609	19	609	y	0.01	12	1377	12	1377	y	0.02	17	681	17	681	y	0.01	5	979	5	979	y	0.01	11	1702	11	1702	y	0.01	9	964	9	964	y	0.00	8	1711	8	1711	y	0.0478566196408534	2.61116483933547	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_6002	chr15	102396712	102398187	+	102396712	102397211	3pMXE	ENSMUST00000230129.2	known	0.07	44	613	44	613	y	0.07	22	285	22	285	y	0.08	54	638	54	638	y	0.07	22	274	22	274	y	0.05	28	484	28	484	y	0.06	44	676	44	676	y	0.06	33	556	33	556	y	0.06	53	790	53	790	y	0.00542395034130871	4.24264068711929	up	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6004	chr15	102396712	102398187	+	102396712;102397249	102397211;102398187	ES	ENSMUST00000077037.13	known	0.08	44	521.0	44	613;429	y	0.08	22	255.5	22	285;226	y	0.09	54	533.5	54	638;429	y	0.08	22	238.0	22	274;202	y	0.06	28	405.5	28	484;327	y	0.07	44	585.5	44	676;495	y	0.06	33	508.0	33	556;460	y	0.07	53	693.5	53	790;597	y	0.00395758466635652	4.58257569495584	up	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6042	chr15	10326631	10345744	+	10326631	10328367	3pMXE	ENSMUST00000005400.13	known	0.00	0	10	0	10	n	0.00	0	1	0	1	n	0.12	2	15	2	15	y	0.00	0	4	0	4	n	0.13	2	13	2	13	y	0.28	5	13	5	13	y	0.38	5	8	5	8	y	0.25	5	15	5	15	y	0.0127059170728556	-3.86023424816477	down	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6043	chr15	10326631	10345744	+	10326631	10341860	A3SS&ES	ENSMUST00000145428.8	known	0.00	0	6	0	6	n	-	-	-	-	-	-	0.11	2	17	2	17	y	0.00	0	2	0	2	n	0.11	2	17	2	17	y	0.25	5	15	5	15	y	0.24	5	16	5	16	y	0.20	5	20	5	20	y	0.0238762761574953	-3.36137226879317	down	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6073	chr15	12343237;12343407	12343359;12349454	+	12343237	12349454	cassetteExon	ENSMUST00000059680.7	known	0.02	6.0	253	9;3	253	y	0.01	2.0	151	3;1	151	n	0.02	6.0	248	8;4	248	y	0.02	3.5	202	3;4	202	y	0.03	5.0	149	8;2	149	y	0.03	6.0	210	9;3	210	y	0.03	4.0	152	3;5	152	y	0.02	5.5	246	8;3	246	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
known_NIR_6082	chr15	25941036	25964310	+	25933712	25964310	A5SS	ENSMUST00000228327.2	known	0.27	17	45	17	45	y	0.58	34	25	34	25	y	0.33	15	30	15	30	y	0.49	19	20	19	20	y	0.15	5	29	5	29	y	0.19	8	35	8	35	y	0.12	3	22	3	22	y	0.24	15	47	15	47	y	0.0358162673661067	3.1939475650152	up	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6086	chr15	25941329	25964310	+	25933712	25964310	A5SS	ENSMUST00000228327.2	known	0.51	46	45	46	45	y	0.79	92	25	92	25	y	0.79	111	30	111	30	y	0.69	45	20	45	20	y	0.22	8	29	8	29	y	0.42	25	35	25	35	y	0.27	8	22	8	22	y	0.41	33	47	33	47	y	0.00537400542128223	4.40206563083535	up	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6117	chr15	3301649	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	known	0.79	37	10	37	10	y	0.85	11	2	11	2	y	0.76	26	8	26	8	y	0.81	13	3	13	3	y	0.62	16	10	16	10	y	0.64	23	13	23	13	y	0.79	23	6	23	6	y	0.63	26	15	26	15	y	0.0375005473816871	2.98305669472241	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6121	chr15	3302287	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	known	0.81	43	10	43	10	y	0.83	10	2	10	2	y	0.76	25	8	25	8	y	0.82	14	3	14	3	y	0.58	14	10	14	10	y	0.71	32	13	32	13	y	0.68	13	6	13	6	y	0.67	31	15	31	15	y	0.00727046033851939	4.52903909476957	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6149	chr15	3487490	3611740	-	3487490	3612482	A5SS	ENSMUST00000069451.11	known	0.11	57	441	57	441	y	0.10	16	150	16	150	y	0.09	50	515	50	515	y	0.08	16	197	16	197	y	0.08	41	467	41	467	y	0.06	54	820	54	820	y	0.07	36	493	36	493	y	0.08	48	574	48	574	y	0.0340084674736242	2.79976957577215	up	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6162	chr15	36791232	36794389	-	36791232	36793723	5pMXE	ENSMUST00000110362.4	known	0.00	0	126	0	126	n	0.02	2	82	2	82	y	0.02	2	129	2	129	y	0.00	0	96	0	96	n	0.03	2	56	2	56	y	0.04	5	127	5	127	y	0.02	1	64	1	64	n	0.03	4	124	4	124	y	0.0337095521893972	-2.82842712474619	down	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6163	chr15	36791232	36794389	-	36791232;36793919	36793723;36794389	ES	ENSMUST00000022894.14	known	0.00	0	70.0	0	126;14	n	0.04	2	45.5	2	82;9	y	0.03	2	71.5	2	129;14	y	0.00	0	52.0	0	96;8	n	0.06	2	31.5	2	56;7	y	0.07	5	67.5	5	127;8	y	0.03	1	36.0	1	64;8	n	0.05	4	70.5	4	124;17	y	0.0411459742270663	-2.6148057867317	down	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6164	chr15	36791232	36794389	-	36793922	36794389	3pMXE	ENSMUST00000227067.2	known	0.00	0	10	0	10	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.33	2	4	2	4	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.67	4	2	4	2	n	0.00535476679631533	-4.3245192544037	down	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6165	chr15	36791232;36793922	36793723;36794389	-	36791232	36794389	cassetteExon	ENSMUST00000110361.8	known	1.00	68.0	0	126;10	0	n	0.96	44.0	2	82;6	2	y	0.97	69.5	2	129;10	2	y	1.00	52.5	0	96;9	0	n	0.94	30.0	2	56;4	2	y	0.93	65.0	5	127;3	5	y	0.97	32.5	1	64;1	1	n	0.94	63.0	4	124;2	4	y	0.032769048843692	2.78543007265578	up	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6166	chr15	36793922	36794389	-	36793919	36794389	A3SS	ENSMUST00000022894.14	known	0.42	10	14	10	14	y	0.40	6	9	6	9	y	0.42	10	14	10	14	y	0.53	9	8	9	8	y	0.36	4	7	4	7	y	0.27	3	8	3	8	y	0.11	1	8	1	8	n	0.11	2	17	2	17	y	0.0256034924782549	3.35044238735446	up	ENSMUSG00000022285.18	Ywhaz	chr15	protein_coding	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
known_NIR_6177	chr15	38514853	38518341	-	38514853	38519153	A5SS	ENSMUST00000065308.13	known	0.07	9	114	9	114	y	0.11	7	54	7	54	y	0.11	13	108	13	108	y	0.07	3	39	3	39	y	0.05	3	62	3	62	y	0.05	6	113	6	113	y	0.07	5	68	5	68	y	0.03	4	117	4	117	y	0.0337095521893971	2.82842712474619	up	ENSMUSG00000037458.16	Azin1	chr15	protein_coding	antizyme inhibitor 1
known_NIR_6200	chr15	43141818;43144624	43144415;43145999	-	43141818	43145999	cassetteExon	ENSMUST00000022960.4	known	0.01	1.5	153	1;2	153	n	0.00	0.0	51	0;0	51	n	0.01	2.0	179	2;2	179	y	0.00	0.0	103	0;0	103	n	0.02	3.0	139	2;4	139	y	0.01	2.5	192	0;5	192	n	0.02	3.0	122	4;2	122	y	0.01	2.0	154	1;3	154	n	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000022336.4	Eif3e	chr15	protein_coding	eukaryotic translation initiation factor 3, subunit E
known_NIR_6205	chr15	44295904	44297297	+	44295904	44297250	A3SS	ENSMUST00000226355.2	known	0.91	39	4	39	4	y	0.89	17	2	17	2	y	0.84	36	7	36	7	y	0.94	16	1	16	1	n	0.73	19	7	19	7	y	0.73	30	11	30	11	y	0.81	22	5	22	5	y	0.58	28	20	28	20	y	0.0242482858571847	3.48145743447796	up	ENSMUSG00000022338.9	Eny2	chr15	protein_coding	ENY2 transcription and export complex 2 subunit
known_NIR_6219	chr15	54713523;54714818	54714744;54723439	-	54713523	54723439	cassetteExon	ENSMUST00000041591.16	known	0.03	5.5	166	5;6	166	y	0.04	2.5	58	4;1	58	n	0.03	3.5	123	3;4	123	y	0.02	2.5	134	1;4	134	n	0.01	1.0	97	2;0	97	n	0.01	1.0	142	2;0	142	n	0.02	2.0	84	2;2	84	y	0.01	1.5	143	0;3	143	n	0.0148041432566231	3.65563077506965	up	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
known_NIR_6301	chr15	7170064	7183868	+	7159307	7183868	A5SS	ENSMUST00000067190.12	known	0.19	22	93	22	93	y	0.14	4	25	4	25	y	0.22	15	54	15	54	y	0.03	1	31	1	31	n	0.66	106	54	106	54	y	0.60	147	100	147	100	y	0.59	91	64	91	64	y	0.51	96	94	96	94	y	0.000214221831612089	-8.57727575881319	down	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
known_NIR_6336	chr15	75734330	75735158	+	75734330	75735254	A3SS	ENSMUST00000023238.6	known	0.01	2	160	2	160	y	0.02	2	115	2	115	y	0.03	5	156	5	156	y	0.03	4	115	4	115	y	0.00	0	84	0	84	n	0.01	1	111	1	111	n	0.00	0	66	0	66	n	0.01	1	88	1	88	n	0.0264653665333922	3.13049516849971	up	ENSMUSG00000022575.6	Gsdmd	chr15	protein_coding	gasdermin D
known_NIR_6351	chr15	75773104	75781309	-	75773104	75781094	5pMXE	ENSMUST00000154584.9	known	0.01	4	283	4	283	y	0.00	0	143	0	143	n	0.02	5	314	5	314	y	0.02	3	141	3	141	y	0.03	6	202	6	202	y	0.03	7	245	7	245	y	0.02	5	229	5	229	y	0.03	7	269	7	269	y	0.0435576347221575	-2.77746029931765	down	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6434	chr15	76468834	76471958	+	76460694	76471958	A5SS	ENSMUST00000162503.8	known	0.02	1	64	1	64	n	0.00	0	19	0	19	n	0.02	1	54	1	54	n	0.00	0	17	0	17	n	0.04	2	55	2	55	y	0.12	11	78	11	78	y	0.12	10	73	10	73	y	0.10	9	79	9	79	y	0.0163565902955607	-4.29497479743925	down	ENSMUSG00000022550.19	Adck5	chr15	protein_coding	aarF domain containing kinase 5
known_NIR_6441	chr15	76486787	76486991	-	76486848	76486991	A3SS	ENSMUST00000231042.2	known	0.07	3	40	3	40	y	0.07	1	14	1	14	n	0.07	3	41	3	41	y	0.04	1	22	1	22	n	0.03	1	33	1	33	n	0.00	0	34	0	34	n	0.05	2	36	2	36	y	0.02	1	40	1	40	n	0.0296651463644818	2.92306411107734	up	ENSMUSG00000034022.9	Cpsf1	chr15	protein_coding	cleavage and polyadenylation specific factor 1
known_NIR_6492	chr15	78319910	78322687	+	78319910	78321101	3pMXE	ENSMUST00000160916.8	known	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.00	0	8	0	8	n	0.00	0	1	0	1	n	0.80	4	1	4	1	n	0.17	1	5	1	5	n	0.67	2	1	2	1	n	0.29	2	5	2	5	n	0.0488571966971239	-3.21265335672373	down	ENSMUSG00000033287.17	Kctd17	chr15	protein_coding	potassium channel tetramerisation domain containing 17
known_NIR_6498	chr15	78349508	78352626	-	78349543	78352626	A3SS	ENSMUST00000017086.5	known	0.26	170	495	170	495	y	0.29	48	120	48	120	y	0.23	132	450	132	450	y	0.28	73	192	73	192	y	0.20	95	379	95	379	y	0.21	172	639	172	639	y	0.21	108	413	108	413	y	0.23	164	554	164	554	y	0.0205024256511632	3.58394478112802	up	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6530	chr15	79555209	79556098	+	79555209;79555492	79555374;79556098	ES	ENSMUST00000023062.5	known	0.02	5	306.0	5	296;316	y	0.01	1	157.0	1	148;166	n	0.01	4	301.5	4	292;311	y	0.02	4	158.5	4	143;174	y	0.03	7	212.5	7	196;229	y	0.02	7	306.0	7	289;323	y	0.03	7	248.0	7	229;267	y	0.02	5	254.5	5	234;275	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000022427.5	Tomm22	chr15	protein_coding	translocase of outer mitochondrial membrane 22
known_NIR_6531	chr15	79555209	79556098	+	79555492	79556098	5pMXE	ENSMUST00000127292.2	known	0.02	5	316	5	316	y	0.01	1	166	1	166	n	0.01	4	311	4	311	y	0.02	4	174	4	174	y	0.03	7	229	7	229	y	0.02	7	323	7	323	y	0.03	7	267	7	267	y	0.02	5	275	5	275	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000022427.5	Tomm22	chr15	protein_coding	translocase of outer mitochondrial membrane 22
known_NIR_6569	chr15	81695921	81699145	+	81687087	81699145	A5SS	ENSMUST00000109553.10	known	0.72	79	31	79	31	y	1.00	15	0	15	0	n	0.69	83	37	83	37	y	0.85	34	6	34	6	y	0.49	47	48	47	48	y	0.56	106	83	106	83	y	0.65	84	46	84	46	y	0.56	91	72	91	72	y	0.0302238059174238	3.20530382378016	up	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6571	chr15	81696492	81699145	+	81695921	81699145	A5SS	ENSMUST00000023024.8	known	0.18	17	79	17	79	y	0.25	5	15	5	15	y	0.16	16	83	16	83	y	0.24	11	34	11	34	y	0.10	5	47	5	47	y	0.17	22	106	22	106	y	0.05	4	84	4	84	y	0.12	12	91	12	91	y	0.0266440893033343	2.93141950921103	up	ENSMUSG00000022389.16	Tef	chr15	protein_coding	thyrotroph embryonic factor
known_NIR_6579	chr15	81883815;81886811	81886742;81887959	-	81883815	81887959	cassetteExon	ENSMUST00000146628.8	known	0.96	131.0	6	136;126	6	y	0.99	71.0	1	76;66	1	n	0.93	96.0	7	99;93	7	y	0.94	63.5	4	65;62	4	y	0.85	71.5	13	72;71	13	y	0.84	110.5	21	120;101	21	y	0.93	84.5	6	86;83	6	y	0.92	119.5	10	131;108	10	y	0.0497712014740383	2.6148057867317	up	ENSMUSG00000022472.17	Desi1	chr15	protein_coding	desumoylating isopeptidase 1
known_NIR_6602	chr15	82287297	82287920	-	82287539	82287920	3pMXE	ENSMUST00000230843.2	known	0.05	131	2657	131	2657	y	0.07	64	830	64	830	y	0.04	104	2801	104	2801	y	0.06	60	911	60	911	y	0.03	60	2115	60	2115	y	0.04	133	3310	133	3310	y	0.03	108	3045	108	3045	y	0.04	91	2450	91	2450	y	0.0453983125632167	2.82842712474619	up	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6603	chr15	82287297;82287539	82287398;82287920	-	82287297	82287920	cassetteExon	ENSMUST00000230198.2	known	0.95	2767.5	131	2878;2657	131	y	0.93	796.5	64	763;830	64	y	0.96	2734.0	104	2667;2801	104	y	0.94	906.5	60	902;911	60	y	0.97	2066.0	60	2017;2115	60	y	0.96	3310.0	133	3310;3310	133	y	0.97	3127.5	108	3210;3045	108	y	0.96	2408.0	91	2366;2450	91	y	0.0453983125632162	-2.8284271247462	down	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6605	chr15	82287297;82288107	82287920;82290108	-	82287297;82289839	82287398;82290108	MXE	ENSMUST00000229911.2	known	0.03	67.0	2365.5	131;3	2878;1853	y	0.04	32.0	690.0	64;0	763;617	n	0.03	55.5	2160.0	104;7	2667;1653	y	0.04	33.0	806.0	60;6	902;710	y	0.02	30.5	1751.0	60;1	2017;1485	n	0.02	69.5	2772.5	133;6	3310;2235	y	0.02	54.0	2503.5	108;0	3210;1797	n	0.02	45.5	2046.5	91;0	2366;1727	n	0.013846832988859	5.19615242270663	up	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
known_NIR_6628	chr15	82575795;82576244	82576073;82577014	-	82575795	82577014	cassetteExon	ENSMUST00000100380.5	known	0.30	25.5	59	9;42	59	y	0.36	5.0	9	2;8	9	y	0.24	20.0	63	7;33	63	y	0.42	15.5	21	6;25	21	y	0.11	12.5	106	5;20	106	y	0.14	19.0	118	7;31	118	y	0.18	18.5	85	6;31	85	y	0.16	13.5	71	2;25	71	y	0.0125978256775498	4.39673947567156	up	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
known_NIR_6644	chr15	83050407	83056313	-	83050407	83054338	5pMXE	ENSMUST00000162834.3	known	0.99	614	8	614	8	y	1.00	173	0	173	0	n	0.99	493	6	493	6	y	0.99	192	1	192	1	n	0.97	572	15	572	15	y	0.99	793	10	793	10	y	0.97	622	20	622	20	y	0.98	700	11	700	11	y	0.0435576347221585	2.77746029931763	up	ENSMUSG00000018042.19	Cyb5r3	chr15	protein_coding	cytochrome b5 reductase 3
known_NIR_6708	chr15	89010640	89010844	-	89010640	89010833	A5SS	ENSMUST00000129398.8	known	0.82	18	4	18	4	y	0.75	9	3	9	3	y	0.78	14	4	14	4	y	0.85	17	3	17	3	y	1.00	10	0	10	0	n	0.94	15	1	15	1	n	0.91	20	2	20	2	y	0.94	16	1	16	1	n	0.00239681040157966	-5.090496180606	down	ENSMUSG00000062906.13	Hdac10	chr15	protein_coding	histone deacetylase 10
known_NIR_6757	chr15	93339593;93350054	93349998;93353332	+	93339593	93353332	cassetteExon	ENSMUST00000109256.11	known	0.69	17.5	8	17;18	8	y	0.70	11.5	5	9;14	5	y	0.69	18.0	8	20;16	8	y	0.45	9.0	11	9;9	11	y	0.86	19.0	3	21;17	3	y	0.90	28.0	3	32;24	3	y	0.87	13.0	2	15;11	2	y	0.76	18.5	6	21;16	6	y	0.0298829999698191	-3.1599997721291	down	ENSMUSG00000036167.17	Pphln1	chr15	protein_coding	periphilin 1
known_NIR_6764	chr15	96917742	96929015	-	96917742	96918184	5pMXE	ENSMUST00000166223.2	known	0.86	874	142	874	142	y	0.86	263	44	263	44	y	0.86	638	106	638	106	y	0.86	458	77	458	77	y	0.94	811	52	811	52	y	0.93	1188	94	1188	94	y	0.93	635	47	635	47	y	0.95	1510	80	1510	80	y	0.000512695408574066	-16.18922200388	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6765	chr15	96917742	96929015	-	96917742	96953736	A5SS	ENSMUST00000023101.10	known	0.98	874	14	874	14	y	0.97	263	9	263	9	y	0.98	638	10	638	10	y	0.98	458	8	458	8	y	1.00	811	2	811	2	y	0.99	1188	7	1188	7	y	1.00	635	2	635	2	y	1.00	1510	5	1510	5	y	0.00131073191803929	-5.65685424949238	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6766	chr15	96917742	96947831	-	96917742	96918184	5pMXE	ENSMUST00000166223.2	known	0.21	37	142	37	142	y	0.20	11	44	11	44	y	0.34	54	106	54	106	y	0.13	12	77	12	77	y	0.70	121	52	121	52	y	0.59	133	94	133	94	y	0.68	102	47	102	47	y	0.78	285	80	285	80	y	0.000221565299416568	-7.97129161466678	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6767	chr15	96917742	96947831	-	96917742	96929015	5pMXE	ENSMUST00000230086.2	known	0.04	37	874	37	874	y	0.04	11	263	11	263	y	0.08	54	638	54	638	y	0.03	12	458	12	458	y	0.13	121	811	121	811	y	0.10	133	1188	133	1188	y	0.14	102	635	102	635	y	0.16	285	1510	285	1510	y	0.00234499386603228	-5.08729761414893	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6768	chr15	96917742	96947831	-	96917742	96953736	A5SS	ENSMUST00000023101.10	known	0.73	37	14	37	14	y	0.55	11	9	11	9	y	0.84	54	10	54	10	y	0.60	12	8	12	8	y	0.98	121	2	121	2	y	0.95	133	7	133	7	y	0.98	102	2	102	2	y	0.98	285	5	285	5	y	0.0201102087174405	-4.44019306453132	down	ENSMUSG00000022464.15	Slc38a4	chr15	protein_coding	solute carrier family 38, member 4
known_NIR_6810	chr15	99290921;99298088	99297942;99299461	+	99290921;99291611	99291576;99299461	MXE	ENSMUST00000160635.8	known	0.02	1.0	45.0	1;1	35;55	n	0.00	0.0	16.0	0;0	12;20	n	0.00	0.0	25.5	0;0	19;32	n	0.02	0.5	20.5	1;0	16;25	n	0.03	1.0	31.0	0;2	22;40	n	0.04	2.0	49.0	2;2	38;60	y	0.06	1.5	24.5	2;1	17;32	n	0.04	1.5	39.5	1;2	30;49	n	0.00902874004308701	-3.80601028449928	down	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6815	chr15	99291264	99299461	+	99298088	99299461	A5SS&ES	ENSMUST00000161778.8	known	0.93	14	1	14	1	n	1.00	17	0	17	0	n	1.00	23	0	23	0	n	1.00	12	0	12	0	n	0.89	16	2	16	2	y	0.86	12	2	12	2	y	0.89	8	1	8	1	n	0.95	37	2	37	2	y	0.0164963200916035	3.3023719320147	up	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6821	chr15	99298088	99299461	+	99291611	99299461	A5SS	ENSMUST00000162624.8	known	0.02	1	55	1	55	n	0.00	0	20	0	20	n	0.00	0	32	0	32	n	0.00	0	25	0	25	n	0.05	2	40	2	40	y	0.03	2	60	2	60	y	0.03	1	32	1	32	n	0.04	2	49	2	49	y	0.00335990948770375	-4.695048270345	down	ENSMUSG00000023010.16	Tmbim6	chr15	protein_coding	transmembrane BAX inhibitor motif containing 6
known_NIR_6841	chr16	10959635	10963106	-	10959635	10963044	A5SS	ENSMUST00000037633.16	known	0.19	20	87	20	87	y	0.23	15	50	15	50	y	0.16	16	86	16	86	y	0.20	11	43	11	43	y	0.31	22	49	22	49	y	0.27	17	46	17	46	y	0.31	19	43	19	43	y	0.30	21	48	21	48	y	0.00171474594635543	-5.93849595989879	down	ENSMUSG00000037965.16	Zc3h7a	chr16	protein_coding	zinc finger CCCH type containing 7 A
known_NIR_6874	chr16	14008096	14009454	+	14008096	14010206	A3SS	ENSMUST00000117958.8	known	0.78	7	2	7	2	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	1.00	2	0	2	0	n	0.75	6	2	6	2	n	0.50	4	4	4	4	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.0332382009677213	2.7516077481871	up	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6875	chr16	14008096	14010206	+	14008096	14009582	A3SS	ENSMUST00000023359.13	known	0.05	2	35	2	35	y	0.05	1	20	1	20	n	0.04	1	27	1	27	n	0.00	0	14	0	14	n	0.09	2	21	2	21	y	0.10	4	38	4	38	y	0.08	2	24	2	24	y	0.12	3	23	3	23	y	0.00658940467503046	-4.26660092991431	down	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6879	chr16	15374407	15398923	-	15374407;15395004	15394879;15398923	ES	ENSMUST00000229859.2	known	0.14	13	81.0	13	79;83	y	0.16	11	57.5	11	59;56	y	0.17	18	90.5	18	88;93	y	0.12	6	43.5	6	42;45	y	0.11	7	54.5	7	55;54	y	0.13	13	84.5	13	81;88	y	0.11	8	67.0	8	68;66	y	0.08	7	78.5	7	74;83	y	0.0386139762132635	2.64231303630327	up	ENSMUSG00000022674.16	Ube2v2	chr16	protein_coding	ubiquitin-conjugating enzyme E2 variant 2
known_NIR_6940	chr16	17449921	17456360	+	17449921;17453432	17453346;17456360	ES	ENSMUST00000006053.13	known	0.44	7	9.0	7	5;13	y	0.60	6	4.0	6	7;1	n	0.48	6	6.5	6	8;5	y	0.40	4	6.0	4	4;8	y	0.67	6	3.0	6	5;1	n	0.67	9	4.5	9	4;5	y	0.55	6	5.0	6	6;4	y	0.62	12	7.5	12	10;5	y	0.0342550773897953	-2.85298383409359	down	ENSMUSG00000005899.15	Smpd4	chr16	protein_coding	sphingomyelin phosphodiesterase 4
known_NIR_6987	chr16	18230707	18243054	-	18230707	18232016	5pMXE	ENSMUST00000165430.8	known	0.98	877	20	877	20	y	0.99	243	2	243	2	y	0.91	833	84	833	84	y	0.97	300	8	300	8	y	0.54	611	513	611	513	y	0.58	934	687	934	687	y	0.43	635	837	635	837	y	0.68	685	321	685	321	y	0.0023669450803808	7.39939478034779	up	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
known_NIR_6988	chr16	18230707	18245106	-	18230707	18232016	5pMXE	ENSMUST00000165430.8	known	0.94	292	20	292	20	y	0.98	92	2	92	2	y	0.76	272	84	272	84	y	0.92	88	8	88	8	y	0.34	262	513	262	513	y	0.30	296	687	296	687	y	0.22	238	837	238	837	y	0.42	230	321	230	321	y	0.000112123998067036	9.09512569871411	up	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
known_NIR_7045	chr16	20528474	20528630	-	20528430	20528630	A3SS	ENSMUST00000007207.15	known	0.02	2	86	2	86	y	0.00	0	8	0	8	n	0.03	3	83	3	83	y	0.00	0	22	0	22	n	0.07	5	65	5	65	y	0.08	9	105	9	105	y	0.05	4	72	4	72	y	0.02	2	104	2	104	y	0.0404794144356916	-2.79478278419107	down	ENSMUSG00000022843.18	Clcn2	chr16	protein_coding	chloride channel, voltage-sensitive 2
known_NIR_7049	chr16	20547683	20547814	-	20547596	20547814	A3SS	ENSMUST00000115437.4	known	0.02	2	97	2	97	y	0.04	2	53	2	53	y	0.02	2	92	2	92	y	0.01	1	66	1	66	n	0.00	0	65	0	65	n	0.01	1	88	1	88	n	0.00	0	58	0	58	n	0.00	0	95	0	95	n	0.0428004269752684	2.95419578350399	up	ENSMUSG00000022847.16	Thpo	chr16	protein_coding	thrombopoietin
known_NIR_7055	chr16	20555192	20555659	+	20555133	20555659	A5SS	ENSMUST00000115423.8	known	0.12	4	30	4	30	y	0.13	2	13	2	13	y	0.18	6	28	6	28	y	0.08	1	12	1	12	n	0.07	2	27	2	27	y	0.05	2	37	2	37	y	0.05	1	18	1	18	n	0.00	0	17	0	17	n	0.017818081315094	3.34471176249816	up	ENSMUSG00000006958.15	Chrd	chr16	protein_coding	chordin
known_NIR_7061	chr16	21614725	21619525	+	21614725	21625721	A3SS	ENSMUST00000211443.2	known	1.00	10	0	10	0	n	1.00	10	0	10	0	n	0.88	14	2	14	2	y	0.93	14	1	14	1	n	0.64	14	8	14	8	y	0.87	13	2	13	2	y	0.63	12	7	12	7	y	0.58	7	5	7	5	y	0.0170350902403879	3.83856758111985	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7064	chr16	21614725	21627428	+	21614725;21625869	21625721;21627428	ES	ENSMUST00000211443.2	known	0.90	32	3.5	32	0;7	n	0.96	13	0.5	13	0;1	n	0.97	31	1.0	31	2;0	n	0.96	13	0.5	13	1;0	n	0.82	25	5.5	25	8;3	y	0.86	34	5.5	34	2;9	y	0.82	32	7.0	32	7;7	y	0.72	17	6.5	17	5;8	y	0.0101506003446875	4.20590717591506	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7065	chr16	21614725;21625869	21625721;21627428	+	21614725;21621847	21619465;21627428	MXE	ENSMUST00000209728.2	known	0.30	3.5	8.0	0;7	11;5	n	0.07	0.5	7.0	0;1	11;3	n	0.10	1.0	9.5	2;0	12;7	n	0.14	0.5	3.0	1;0	5;1	n	0.52	5.5	5.0	8;3	5;5	y	0.32	5.5	11.5	2;9	21;2	y	0.50	7.0	7.0	7;7	13;1	n	0.54	6.5	5.5	5;8	10;1	n	0.0045335662061577	-4.40734943299123	down	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7069	chr16	21621847	21627428	+	21625869	21627428	A5SS&ES	ENSMUST00000211443.2	known	0.42	5	7	5	7	y	0.75	3	1	3	1	n	1.00	7	0	7	0	n	1.00	1	0	1	0	n	0.62	5	3	5	3	n	0.18	2	9	2	9	y	0.12	1	7	1	7	n	0.11	1	8	1	8	n	0.0273208914315305	2.91307037322862	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7124	chr16	23109388	23136314	+	23075851	23136314	A5SS	ENSMUST00000023601.14	known	0.86	190	32	190	32	y	0.95	278	14	278	14	y	0.81	110	25	110	25	y	0.94	346	22	346	22	y	0.71	42	17	42	17	y	0.68	71	34	71	34	y	0.67	36	18	36	18	y	0.81	97	23	97	23	y	0.00977909425907931	3.72927574278511	up	ENSMUSG00000022885.17	St6gal1	chr16	protein_coding	beta galactoside alpha 2,6 sialyltransferase 1
known_NIR_7134	chr16	23346356;23373683	23373448;23378522	+	23346356;23362621	23353330;23378522	MXE	ENSMUST00000211460.2	known	0.40	17.0	25.5	3;31	51;0	n	0.28	4.0	10.5	0;8	21;0	n	0.41	15.5	22.5	4;27	45;0	n	0.38	10.5	17.0	0;21	34;0	n	0.52	17.5	16.0	3;32	32;0	n	0.43	16.5	22.0	2;31	44;0	n	0.54	19.0	16.0	8;30	31;1	n	0.44	14.0	17.5	4;24	35;0	n	0.0304983052131477	-2.82044096163084	down	ENSMUSG00000109783.2	Gm45338	chr16	lncRNA	predicted gene 45338
known_NIR_7145	chr16	29407177;29407694	29407641;29408499	+	29407177	29408499	cassetteExon	ENSMUST00000160597.8	known	0.37	30.5	51	32;29	51	y	0.40	15.5	23	12;19	23	y	0.38	24.0	40	25;23	40	y	0.32	12.5	27	13;12	27	y	0.31	18.5	42	17;20	42	y	0.24	30.0	94	28;32	94	y	0.35	29.0	53	30;28	53	y	0.28	30.0	77	21;39	77	y	0.0492255659539388	2.51461891161995	up	ENSMUSG00000038084.17	Opa1	chr16	protein_coding	OPA1, mitochondrial dynamin like GTPase
known_NIR_7180	chr16	32066343	32070641	+	32066085	32070641	A5SS	ENSMUST00000141820.8	known	0.55	11	9	11	9	y	0.78	7	2	7	2	n	0.68	19	9	19	9	y	0.67	6	3	6	3	n	0.50	3	3	3	3	n	0.44	11	14	11	14	y	0.45	5	6	5	6	y	0.44	8	10	8	10	y	0.0160987493629712	4.31707601436939	up	ENSMUSG00000022787.11	Wdr53	chr16	protein_coding	WD repeat domain 53
known_NIR_7213	chr16	32877275	32877506	+	32876925	32877506	A5SS	ENSMUST00000115079.8	known	0.04	5	127	5	127	y	0.00	0	51	0	51	n	0.00	0	132	0	132	n	0.00	0	76	0	76	n	0.06	6	96	6	96	y	0.09	11	114	11	114	y	0.05	5	99	5	99	y	0.08	12	131	12	131	y	0.00450535854027133	-4.43129367525598	down	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7214	chr16	32877275	32877506	+	32876987	32877506	A5SS	ENSMUST00000115078.8	known	0.29	5	12	5	12	y	0.00	0	5	0	5	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.40	6	9	6	9	y	0.41	11	16	11	16	y	0.29	5	12	5	12	y	0.57	12	9	12	9	y	0.0107204060003518	-3.72474497238084	down	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7244	chr16	35892507	35905387	+	35892507;35903186	35903061;35905387	ES	ENSMUST00000164916.9	known	0.01	2	160.0	2	111;209	y	0.00	0	61.5	0	52;71	n	0.01	2	187.0	2	130;244	y	0.00	0	90.5	0	70;111	n	0.04	6	151.0	6	124;178	y	0.02	4	184.0	4	154;214	y	0.05	7	136.0	7	93;179	y	0.03	5	162.0	5	112;212	y	0.0122088038324649	-4.24264068711929	down	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7261	chr16	3717832	3718557	+	3717832	3729315	A3SS	ENSMUST00000176233.2	known	0.86	24	4	24	4	y	1.00	2	0	2	0	n	0.88	21	3	21	3	y	0.88	7	1	7	1	n	0.75	15	5	15	5	y	0.83	30	6	30	6	y	0.84	21	4	21	4	y	0.77	20	6	20	6	y	0.0370737299526712	2.7622429735347	up	ENSMUSG00000093575.2	Gm20695	chr16	protein_coding	predicted gene 20695
known_NIR_7264	chr16	3717832	3729315	+	3717832	3718507	3pMXE	ENSMUST00000151988.8	known	0.02	4	196	4	196	y	0.00	0	57	0	57	n	0.01	3	198	3	198	y	0.01	1	99	1	99	n	0.04	5	126	5	126	y	0.03	6	202	6	202	y	0.02	4	178	4	178	y	0.04	6	147	6	147	y	0.0121941868183737	-3.57623736407562	down	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7281	chr16	4311744	4314269	-	4311744	4359544	A5SS	ENSMUST00000133440.2	known	-	-	-	-	-	-	-	-	-	-	-	-	0.90	26	3	26	3	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.0334754167131482	19	up	ENSMUSG00000022519.15	Srl	chr16	protein_coding	sarcalumenin
known_NIR_7315	chr16	44565856	44566563	-	44565856	44566362	A5SS	ENSMUST00000162512.8	known	0.09	3	31	3	31	y	0.00	0	9	0	9	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.11	3	24	3	24	y	0.24	4	13	4	13	y	0.17	6	29	6	29	y	0.017925429948942	-3.36776741107931	down	ENSMUSG00000022668.11	Gtpbp8	chr16	protein_coding	GTP-binding protein 8 (putative)
known_NIR_7331	chr16	45646458	45680685	-	45646458	45664571	5pMXE	ENSMUST00000036355.13	known	0.50	17	17	17	17	y	0.56	5	4	5	4	n	0.42	5	7	5	7	y	0.45	5	6	5	6	y	0.73	11	4	11	4	y	0.79	19	5	19	5	y	0.83	5	1	5	1	n	1.00	17	0	17	0	n	0.00384310488370997	-5.41632407083893	down	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
known_NIR_7349	chr16	46269331	46274987	-	46258431	46274987	A3SS	ENSMUST00000023335.13	known	0.79	151	39	151	39	y	0.88	35	5	35	5	y	0.80	138	35	138	35	y	0.92	56	5	56	5	y	0.67	69	34	69	34	y	0.73	128	47	128	47	y	0.69	94	43	94	43	y	0.83	172	35	172	35	y	0.0488165156218414	2.47368421052632	up	ENSMUSG00000022656.16	Nectin3	chr16	protein_coding	nectin cell adhesion molecule 3
known_NIR_7379	chr16	49688475	49704528	+	49688475;49689443	49689381;49704528	ES	ENSMUST00000229640.2	known	0.57	174	130.5	174	146;115	y	0.61	102	66.0	102	66;66	y	0.63	165	97.0	165	108;86	y	0.61	84	53.5	84	54;53	y	0.75	101	33.5	101	30;37	y	0.75	183	62.0	183	57;67	y	0.65	110	59.0	110	52;66	y	0.70	200	84.0	200	86;82	y	0.012825572249133	-3.97535140628081	down	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7381	chr16	49727175	49731232	+	49727175	49728417	A3SS&ES	ENSMUST00000230281.2	known	0.61	191	124	191	124	y	0.62	122	76	122	76	y	0.62	209	127	209	127	y	0.67	108	54	108	54	y	0.53	102	92	102	92	y	0.61	157	99	157	99	y	0.55	126	103	126	103	y	0.57	164	126	164	126	y	0.0261194313434527	2.98240454031731	up	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7382	chr16	49727175;49728441	49728417;49731232	+	49727175	49731232	cassetteExon	ENSMUST00000229640.2	known	0.38	115.0	191	124;106	191	y	0.35	66.5	122	76;57	122	y	0.36	117.5	209	127;108	209	y	0.32	51.5	108	54;49	108	y	0.46	86.5	102	92;81	102	y	0.39	99.0	157	99;99	157	y	0.44	100.0	126	103;97	126	y	0.42	118.0	164	126;110	164	y	0.00895301708043422	-3.85164443259822	down	ENSMUSG00000055447.20	Cd47	chr16	protein_coding	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
known_NIR_7390	chr16	5013835	5015419	-	5013922	5015419	A3SS	ENSMUST00000147567.2	known	0.01	1	71	1	71	n	0.00	0	27	0	27	n	0.04	2	54	2	54	y	0.00	0	16	0	16	n	0.08	3	36	3	36	y	0.06	4	65	4	65	y	0.11	7	55	7	55	y	0.04	2	47	2	47	y	0.0189249264221778	-3.39411254969543	down	ENSMUSG00000023143.11	Nagpa	chr16	protein_coding	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
known_NIR_7400	chr16	55844801	55849966	-	55838890	55849966	A3SS	ENSMUST00000140227.2	known	0.98	132	3	132	3	y	0.98	49	1	49	1	n	0.98	127	3	127	3	y	0.96	51	2	51	2	y	1.00	82	0	82	0	n	1.00	89	0	89	0	n	0.99	78	1	78	1	n	0.98	103	2	103	2	y	0.0448673860955743	-2.52810291480115	down	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7405	chr16	55845000	55849966	-	55838890	55849966	A3SS	ENSMUST00000140227.2	known	0.75	9	3	9	3	y	0.67	2	1	2	1	n	0.62	5	3	5	3	n	0.75	6	2	6	2	n	-	-	-	-	-	-	1.00	12	0	12	0	n	0.94	16	1	16	1	n	0.80	8	2	8	2	y	0.0457547433580563	-3.20535717142661	down	ENSMUSG00000071533.12	Pcnp	chr16	protein_coding	PEST proteolytic signal containing nuclear protein
known_NIR_7473	chr16	86598325	86600861	-	86567285	86600861	A3SS	ENSMUST00000232333.2	known	0.05	2	41	2	41	y	0.00	0	11	0	11	n	0.00	0	48	0	48	n	0.00	0	21	0	21	n	0.13	4	27	4	27	y	0.04	2	49	2	49	y	0.06	3	44	3	44	y	0.06	4	63	4	63	y	0.0494728062765369	-2.56815495002312	down	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
known_NIR_7511	chr16	91468353	91468836	+	91468353	91471583	A3SS	ENSMUST00000140312.8	known	0.60	15	10	15	10	y	0.65	17	9	17	9	y	0.58	7	5	7	5	y	0.53	8	7	8	7	y	0.33	5	10	5	10	y	0.15	2	11	2	11	y	0.44	4	5	4	5	n	0.15	2	11	2	11	y	0.0152487332366916	4.26305570867256	up	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7515	chr16	91470910	91471583	+	91468353	91471583	A5SS	ENSMUST00000140312.8	known	0.29	4	10	4	10	y	0.36	5	9	5	9	y	0.55	6	5	6	5	y	0.36	4	7	4	7	y	0.00	0	10	0	10	n	0.21	3	11	3	11	y	0.00	0	5	0	5	n	0.21	3	11	3	11	y	0.0136418953206626	3.45825233354277	up	ENSMUSG00000022961.19	Son	chr16	protein_coding	Son DNA binding protein
known_NIR_7543	chr16	93574381;93577335	93577261;93577645	+	93574381	93577645	cassetteExon	ENSMUST00000045004.11	known	0.03	1.5	57	3;0	57	n	0.03	1.0	29	0;2	29	n	0.06	3.5	52	5;2	52	y	0.04	1.5	37	3;0	37	n	0.01	0.5	46	1;0	46	n	0.01	0.5	75	0;1	75	n	0.02	1.5	59	0;3	59	n	0.03	2.0	69	1;3	69	n	0.0439153235056009	2.63493019696104	up	ENSMUSG00000022946.11	Dop1b	chr16	protein_coding	DOP1 leucine zipper like protein B
known_NIR_7558	chr16	94171051	94172603	-	94171051	94171225	5pMXE	ENSMUST00000113910.8	known	0.20	7	28	7	28	y	0.08	1	12	1	12	n	0.29	6	15	6	15	y	0.06	1	16	1	16	n	0.50	9	9	9	9	y	0.69	29	13	29	13	y	0.43	6	8	6	8	y	0.47	9	10	9	10	y	0.00363931479618341	-4.62463955026764	down	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7559	chr16	94171051	94172603	-	94171051	94171464	5pMXE	ENSMUST00000113906.9	known	0.15	7	40	7	40	y	0.02	1	48	1	48	n	0.10	6	56	6	56	y	0.03	1	34	1	34	n	0.26	9	25	9	25	y	0.50	29	29	29	29	y	0.18	6	28	6	28	y	0.27	9	24	9	24	y	0.0374490495602119	-3.0182794769703	down	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7560	chr16	94171051	94172603	-	94171051	94171600	5pMXE	ENSMUST00000113914.8	known	0.37	7	12	7	12	y	0.12	1	7	1	7	n	0.35	6	11	6	11	y	0.07	1	14	1	14	n	0.64	9	5	9	5	y	0.58	29	21	29	21	y	0.55	6	5	6	5	y	0.50	9	9	9	9	y	0.0159312634609117	-4.11429152502568	down	ENSMUSG00000022940.18	Pigp	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class P
known_NIR_7573	chr16	96174347	96187686	+	96174347;96179584	96179285;96187686	ES	ENSMUST00000113794.8	known	0.89	117	15.0	117	21;9	y	0.90	83	9.5	83	9;10	y	0.93	99	7.5	99	5;10	y	0.89	65	8.0	65	6;10	y	0.93	62	4.5	62	6;3	y	0.95	100	5.0	100	6;4	y	0.94	86	5.5	86	6;5	y	0.97	90	2.5	90	5;0	n	0.0125824220761204	-3.53009043248731	down	ENSMUSG00000000159.17	Igsf5	chr16	protein_coding	immunoglobulin superfamily, member 5
known_NIR_7602	chr17	13135516	13136930	+	13136770	13136930	A5SS&ES	ENSMUST00000147724.8	known	0.04	10	221	10	221	y	0.08	7	84	7	84	y	0.05	13	227	13	227	y	0.04	5	109	5	109	y	0.01	1	158	1	158	n	0.01	2	263	2	263	y	0.02	5	220	5	220	y	0.01	3	288	3	288	y	0.0205872927985535	4.08603134764199	up	ENSMUSG00000068039.14	Tcp1	chr17	protein_coding	t-complex protein 1
known_NIR_7603	chr17	13135516;13136770	13136685;13136930	+	13135516	13136930	cassetteExon	ENSMUST00000089024.13	known	0.96	225.0	10	229;221	10	y	0.93	89.0	7	94;84	7	y	0.95	241.5	13	256;227	13	y	0.96	127.5	5	146;109	5	y	0.99	166.0	1	174;158	1	n	0.99	278.0	2	293;263	2	y	0.98	205.5	5	191;220	5	y	0.99	278.5	3	269;288	3	y	0.00892448323451219	-5.00000000000002	down	ENSMUSG00000068039.14	Tcp1	chr17	protein_coding	t-complex protein 1
known_NIR_7746	chr17	25077283	25079920	+	25076598	25079920	A5SS	ENSMUST00000164251.8	known	0.01	8	1418	8	1418	y	0.00	0	332	0	332	n	0.00	4	1599	4	1599	y	0.00	0	548	0	548	n	0.01	15	1193	15	1193	y	0.01	20	1819	20	1819	y	0.02	29	1565	29	1565	y	0.01	19	1665	19	1665	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7786	chr17	25488453	25491512	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.45	9	11	9	11	y	0.60	3	2	3	2	n	0.50	8	8	8	8	y	0.57	4	3	4	3	n	0.33	4	8	4	8	y	0.52	15	14	15	14	y	0.33	4	8	4	8	y	0.27	4	11	4	11	y	0.0471954414451488	2.61391895404692	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7789	chr17	25488453	25492295	-	25488453	25493136	A5SS	ENSMUST00000173713.8	known	0.62	89	55	89	55	y	0.75	45	15	45	15	y	0.72	90	35	90	35	y	0.69	51	23	51	23	y	0.50	47	47	47	47	y	0.57	97	73	97	73	y	0.58	52	38	52	38	y	0.64	75	42	75	42	y	0.0221226229813746	3.06449576430436	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7790	chr17	25488453	25492295	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.89	89	11	89	11	y	0.96	45	2	45	2	y	0.92	90	8	90	8	y	0.94	51	3	51	3	y	0.85	47	8	47	8	y	0.87	97	14	97	14	y	0.87	52	8	52	8	y	0.87	75	11	75	11	y	0.0196035144559877	3.96942093018723	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7794	chr17	25488453	25492456	-	25488453	25493136	A5SS	ENSMUST00000173713.8	known	0.17	11	55	11	55	y	0.21	4	15	4	15	y	0.19	8	35	8	35	y	0.15	4	23	4	23	y	0.04	2	47	2	47	y	0.03	2	73	2	73	y	0.10	4	38	4	38	y	0.14	7	42	7	42	y	0.0205486562816642	3.53746344753976	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7795	chr17	25488453	25492456	-	25488453	25493147	A5SS	ENSMUST00000049911.16	known	0.50	11	11	11	11	y	0.67	4	2	4	2	n	0.50	8	8	8	8	y	0.57	4	3	4	3	n	0.20	2	8	2	8	y	0.12	2	14	2	14	y	0.33	4	8	4	8	y	0.39	7	11	7	11	y	0.00872151498599057	4.09514179673961	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7809	chr17	26003699	26004402	-	26003699	26003978	5pMXE	ENSMUST00000129917.8	known	0.00	0	20	0	20	n	0.00	0	12	0	12	n	0.11	3	24	3	24	y	0.12	1	7	1	7	n	0.11	2	16	2	16	y	0.15	5	29	5	29	y	0.26	9	25	9	25	y	0.17	4	20	4	20	y	0.0464859576732244	-2.50207014881394	down	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7810	chr17	26003699	26004402	-	26003699;26004168	26003978;26004402	ES	ENSMUST00000140738.8	known	0.00	0	21.0	0	20;22	n	0.00	0	11.0	0	12;10	n	0.12	3	21.0	3	24;18	y	0.09	1	10.0	1	7;13	n	0.11	2	16.0	2	16;16	y	0.19	5	22.0	5	29;15	y	0.33	9	18.0	9	25;11	y	0.17	4	20.0	4	20;20	y	0.0441300732284115	-2.63944017352539	down	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7826	chr17	26083013	26083177	-	26083013	26083225	A5SS	ENSMUST00000237876.2	known	0.00	0	160	0	160	n	0.00	0	42	0	42	n	0.01	2	194	2	194	y	0.00	0	73	0	73	n	0.01	1	128	1	128	n	0.01	2	293	2	293	y	0.02	5	239	5	239	y	0.01	2	158	2	158	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000025732.7	Mcrip2	chr17	protein_coding	MAPK regulated corepressor interacting protein 2
known_NIR_7852	chr17	26439554	26444902	-	26439554	26444886	A5SS	ENSMUST00000114988.8	known	0.13	10	68	10	68	y	0.25	7	21	7	21	y	0.19	12	51	12	51	y	0.24	7	22	7	22	y	0.04	2	51	2	51	y	0.07	6	81	6	81	y	0.00	0	37	0	37	n	0.08	7	77	7	77	y	0.00482497224695137	4.71832049171612	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7853	chr17	26439554	26462964	-	26439554	26444886	A5SS&ES	ENSMUST00000114988.8	known	0.39	44	68	44	68	y	0.47	19	21	19	21	y	0.32	24	51	24	51	y	0.35	12	22	12	22	y	0.16	10	51	10	51	y	0.28	31	81	31	81	y	0.14	6	37	6	37	y	0.23	23	77	23	77	y	0.00769755192199643	3.93182458062452	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7856	chr17	26439554	26462964	-	26439554;26444997	26444886;26462964	ES	ENSMUST00000234687.2	known	0.47	44	50.5	44	68;33	y	0.57	19	14.5	19	21;8	y	0.42	24	32.5	24	51;14	y	0.41	12	17.0	12	22;12	y	0.24	10	32.0	10	51;13	y	0.39	31	49.0	31	81;17	y	0.20	6	24.0	6	37;11	y	0.33	23	46.0	23	77;15	y	0.0206825895648541	3.14290591800098	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7857	chr17	26439554	26462980	-	26439554	26444886	A5SS&ES	ENSMUST00000234687.2	known	0.39	44	68	44	68	y	0.54	25	21	25	21	y	0.41	36	51	36	51	y	0.52	24	22	24	22	y	0.33	25	51	25	51	y	0.33	40	81	40	81	y	0.41	26	37	26	37	y	0.32	36	77	36	77	y	0.0454157500810256	2.7090349632099	up	ENSMUSG00000024187.16	Fam234a	chr17	protein_coding	family with sequence similarity 234, member A
known_NIR_7896	chr17	27237144	27244311	+	27237144	27241225	3pMXE	ENSMUST00000142141.3	known	0.19	17	74	17	74	y	0.07	2	25	2	25	y	0.12	9	67	9	67	y	0.18	6	28	6	28	y	0.07	4	56	4	56	y	0.03	3	92	3	92	y	0.01	1	66	1	66	n	0.04	3	71	3	71	y	0.0271583915579246	3.34392257413628	up	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7897	chr17	27237144;27241314	27241225;27244311	+	27237144	27244311	cassetteExon	ENSMUST00000122106.9	known	0.76	53.0	17	74;32	17	y	0.89	16.5	2	25;8	2	y	0.84	47.5	9	67;28	9	y	0.76	18.5	6	28;9	6	y	0.92	46.5	4	56;37	4	y	0.95	63.0	3	92;34	3	y	0.98	43.5	1	66;21	1	n	0.94	51.5	3	71;32	3	y	0.0179726232910912	-3.93139038874195	down	ENSMUSG00000048731.16	Ggnbp1	chr17	protein_coding	gametogenetin binding protein 1
known_NIR_7935	chr17	28537381	28537792	+	28537381	28539764	A3SS	ENSMUST00000114803.9	known	0.00	0	36	0	36	n	0.00	0	13	0	13	n	0.00	0	17	0	17	n	0.00	0	14	0	14	n	0.13	3	20	3	20	y	0.04	2	43	2	43	y	0.12	3	22	3	22	y	0.14	4	25	4	25	y	0.0182101412797831	-4.70102133515957	down	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7939	chr17	28539830	28545126	+	28539830;28541745	28541620;28545126	ES	ENSMUST00000114803.9	known	0.28	8	20.5	8	31;10	y	0.44	4	5.0	4	7;3	y	0.25	6	18.0	6	27;9	y	0.53	5	4.5	5	7;2	y	0.18	3	14.0	3	19;9	y	0.11	4	31.0	4	38;24	y	0.13	3	19.5	3	26;13	y	0.21	6	23.0	6	31;15	y	0.0403043506528714	3.09728201711373	up	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_7974	chr17	29171731	29180388	+	29171543	29180388	A5SS	ENSMUST00000118762.9	known	0.07	2	28	2	28	y	0.00	0	16	0	16	n	0.08	2	22	2	22	y	0.05	1	18	1	18	n	0.15	2	11	2	11	y	0.20	9	35	9	35	y	0.19	5	22	5	22	y	0.11	2	17	2	17	y	0.00637618343742762	-4.1367470379923	down	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7975	chr17	29171731	29180388	+	29171731;29177031	29176853;29180388	ES	ENSMUST00000233064.2	known	0.15	2	11.0	2	0;22	n	0.00	0	6.0	0	1;11	n	0.24	2	6.5	2	0;13	n	0.12	1	7.5	1	2;13	n	0.50	2	2.0	2	0;4	n	0.62	9	5.5	9	1;10	n	0.71	5	2.0	5	0;4	n	0.25	2	6.0	2	2;10	y	0.0208532033424305	-3.52386609305938	down	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7976	chr17	29171731	29180388	+	29177031	29180388	A5SS&ES	ENSMUST00000233197.2	known	0.08	2	22	2	22	y	0.00	0	11	0	11	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.33	2	4	2	4	n	0.47	9	10	9	10	y	0.56	5	4	5	4	n	0.17	2	10	2	10	y	0.0297077440311688	-3.49978535308065	down	ENSMUSG00000005936.20	Kctd20	chr17	protein_coding	potassium channel tetramerisation domain containing 20
known_NIR_7992	chr17	29257598;29258883	29258428;29259749	+	29257598	29259749	cassetteExon	ENSMUST00000130216.3	known	0.10	20.5	177	22;19	177	y	0.13	12.5	84	11;14	84	y	0.12	19.0	138	19;19	138	y	0.10	10.0	88	10;10	88	y	0.09	10.0	101	9;11	101	y	0.07	13.0	168	14;12	168	y	0.10	15.5	143	18;13	143	y	0.09	16.0	165	8;24	165	y	0.0444277767619923	2.55376959227625	up	ENSMUSG00000071172.14	Srsf3	chr17	protein_coding	serine and arginine-rich splicing factor 3
known_NIR_8025	chr17	30224282	30354297	+	30224282;30279824	30279784;30354297	ES	ENSMUST00000226208.3	known	0.16	26	134.5	26	123;146	y	0.20	19	74.0	19	66;82	y	0.18	24	109.5	24	96;123	y	0.28	22	55.5	22	49;62	y	0.17	14	67.0	14	62;72	y	0.13	15	102.0	15	91;113	y	0.10	7	66.5	7	56;77	y	0.10	13	111.0	13	97;125	y	0.0492949601209675	2.57307008361071	up	ENSMUSG00000044477.13	Zfand3	chr17	protein_coding	zinc finger, AN1-type domain 3
known_NIR_8066	chr17	31832267	31834448	-	31832267;31833544	31833503;31834448	ES	ENSMUST00000236853.2	known	0.60	872	590.0	872	548;632	y	0.64	387	221.5	387	204;239	y	0.58	828	595.0	828	551;639	y	0.63	429	253.5	429	230;277	y	0.51	558	527.0	558	482;572	y	0.53	845	761.5	845	699;824	y	0.54	656	559.5	656	527;592	y	0.57	1201	923.0	1201	880;966	y	0.00698980014083912	4.03299643453399	up	ENSMUSG00000024039.16	Cbs	chr17	protein_coding	cystathionine beta-synthase
known_NIR_8076	chr17	31867868;31870686	31870620;31873953	-	31867868;31871542	31871476;31873953	MXE	ENSMUST00000166526.9	known	0.92	286.5	25.5	314;259	14;37	y	0.91	116.0	11.5	126;106	5;18	y	0.91	279.0	27.5	314;244	17;38	y	0.92	134.5	12.0	152;117	4;20	y	0.94	197.0	11.5	220;174	9;14	y	0.94	274.5	17.5	315;234	17;18	y	0.93	254.0	18.5	271;237	18;19	y	0.94	269.5	16.5	314;225	16;17	y	0.00114013066076554	-5.89188303637181	down	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8077	chr17	31867868;31870782	31870620;31873953	-	31867868;31871542	31871476;31873953	MXE	ENSMUST00000166526.9	known	0.86	157.0	25.5	314;0	14;37	n	0.85	63.0	11.5	126;0	5;18	n	0.85	159.0	27.5	314;4	17;38	y	0.86	76.0	12.0	152;0	4;20	n	0.91	110.0	11.5	220;0	9;14	n	0.90	157.5	17.5	315;0	17;18	n	0.88	135.5	18.5	271;0	18;19	n	0.90	157.0	16.5	314;0	16;17	n	0.00301328367096412	-6.13967850737422	down	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8078	chr17	31870686	31873953	-	31871542	31873953	3pMXE	ENSMUST00000235600.2	known	0.88	259	37	259	37	y	0.85	106	18	106	18	y	0.87	244	38	244	38	y	0.85	117	20	117	20	y	0.93	174	14	174	14	y	0.93	234	18	234	18	y	0.93	237	19	237	19	y	0.93	225	17	225	17	y	0.00289581216186415	-8.99999999999999	down	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8079	chr17	31870686;31871542	31871476;31873953	-	31870686	31873953	cassetteExon	ENSMUST00000014684.6	known	0.10	27.5	259	18;37	259	y	0.11	13.0	106	8;18	106	y	0.10	27.5	244	17;38	244	y	0.09	12.0	117	4;20	117	y	0.05	10.0	174	6;14	174	y	0.07	18.5	234	19;18	234	y	0.05	11.5	237	4;19	237	y	0.05	13.0	225	9;17	225	y	0.00051317340275143	6.97137002317335	up	ENSMUSG00000061613.14	U2af1	chr17	protein_coding	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
known_NIR_8094	chr17	32531347;32532236	32532079;32533085	-	32531347	32533085	cassetteExon	ENSMUST00000002699.7	known	0.28	16.5	42	14;19	42	y	0.21	5.5	21	3;8	21	y	0.22	13.0	47	7;19	47	y	0.19	6.0	25	6;6	25	y	0.21	7.5	29	3;12	29	y	0.10	5.5	50	1;10	50	n	0.14	5.0	31	5;5	31	y	0.06	4.0	61	0;8	61	n	0.0483705212229609	2.60773811234816	up	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8096	chr17	32535641	32537745	-	32536852	32537745	A3SS&ES	ENSMUST00000235205.2	known	0.07	4	54	4	54	y	0.09	3	30	3	30	y	0.04	1	23	1	23	n	0.03	1	28	1	28	n	0.00	0	26	0	26	n	0.00	0	46	0	46	n	0.00	0	24	0	24	n	0.04	2	46	2	46	y	0.0347630147577835	2.79130200918403	up	ENSMUSG00000024045.7	Akap8	chr17	protein_coding	A kinase (PRKA) anchor protein 8
known_NIR_8106	chr17	32555712	32557431	-	32555712;32557328	32557245;32557431	ES	ENSMUST00000236503.2	known	0.07	4	51.0	4	76;26	y	0.05	1	17.5	1	20;15	n	0.11	5	40.5	5	57;24	y	0.00	0	27.0	0	43;11	n	0.13	5	33.0	5	56;10	y	0.15	6	33.0	6	55;11	y	0.08	3	33.0	3	46;20	y	0.19	8	34.0	8	48;20	y	0.0482108855557341	-2.47376674574435	down	ENSMUSG00000002625.11	Akap8l	chr17	protein_coding	A kinase (PRKA) anchor protein 8-like
known_NIR_8164	chr17	33865719	33867787	-	33865633	33867787	A3SS	ENSMUST00000148178.8	known	0.08	19	224	19	224	y	0.08	11	123	11	123	y	0.07	22	316	22	316	y	0.07	9	125	9	125	y	0.07	16	205	16	205	y	0.06	17	251	17	251	y	0.07	15	194	15	194	y	0.06	13	223	13	223	y	0.0498252627805766	2.44948974278318	up	ENSMUSG00000059208.16	Hnrnpm	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein M
known_NIR_8179	chr17	33999617	33999757	-	33999621	33999757	A3SS	ENSMUST00000002360.17	known	0.05	20	379	20	379	y	0.03	13	388	13	388	y	0.04	21	538	21	538	y	0.02	8	337	8	337	y	0.08	9	100	9	100	y	0.06	21	317	21	317	y	0.05	10	200	10	200	y	0.10	20	185	20	185	y	0.0343399639072225	-2.92306411107734	down	ENSMUSG00000002289.17	Angptl4	chr17	protein_coding	angiopoietin-like 4
known_NIR_8297	chr17	35169451	35170861	-	35169451	35169674	5pMXE	ENSMUST00000174464.2	known	0.48	53	57	53	57	y	0.53	48	42	48	42	y	0.43	48	63	48	63	y	0.47	29	33	29	33	y	0.39	29	45	29	45	y	0.38	37	61	37	61	y	0.31	23	52	23	52	y	0.35	34	63	34	63	y	0.00479685057457282	4.39400302342094	up	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8298	chr17	35169451	35170861	-	35169451;35169823	35169674;35170861	ES	ENSMUST00000173811.8	known	0.57	53	40.0	53	57;23	y	0.59	48	33.5	48	42;25	y	0.50	48	48.0	48	63;33	y	0.53	29	26.0	29	33;19	y	0.46	29	33.5	29	45;22	y	0.42	37	50.5	37	61;40	y	0.36	23	41.0	23	52;30	y	0.41	34	48.5	34	63;34	y	0.00337044042893696	4.68827254940319	up	ENSMUSG00000092203.8	1110038B12Rik	chr17	lncRNA	RIKEN cDNA 1110038B12 gene
known_NIR_8314	chr17	35340774	35342029	+	35341436	35342029	A5SS&ES	ENSMUST00000173380.2	known	0.78	14	4	14	4	y	0.71	5	2	5	2	n	0.83	15	3	15	3	y	0.83	5	1	5	1	n	0.83	10	2	10	2	y	1.00	18	0	18	0	n	0.89	24	3	24	3	y	0.93	13	1	13	1	n	0.0354194646407563	-2.74135551509107	down	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8323	chr17	35361360	35361703	+	35361360	35361474	3pMXE	ENSMUST00000173535.8	known	0.51	59	57	59	57	y	0.43	30	40	30	40	y	0.61	72	47	72	47	y	0.47	36	40	36	40	y	0.62	51	31	51	31	y	0.68	85	40	85	40	y	0.76	57	18	57	18	y	0.67	67	33	67	33	y	0.0118640824856699	-3.67624064885733	down	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8324	chr17	35361360;35361581	35361474;35361703	+	35361360	35361703	cassetteExon	ENSMUST00000166426.9	known	0.51	62.0	59	57;67	59	y	0.59	44.0	30	40;48	30	y	0.43	55.0	72	47;63	72	y	0.54	42.5	36	40;45	36	y	0.34	26.5	51	31;22	51	y	0.36	47.0	85	40;54	85	y	0.30	25.0	57	18;32	57	y	0.34	35.0	67	33;37	67	y	0.00784796579217839	5.09854115911792	up	ENSMUSG00000024392.18	Bag6	chr17	protein_coding	BCL2-associated athanogene 6
known_NIR_8330	chr17	3541012	3553156	+	3527553	3553156	A5SS	ENSMUST00000169838.9	known	0.78	7	2	7	2	n	1.00	6	0	6	0	n	0.35	7	13	7	13	y	0.71	5	2	5	2	n	0.00	0	13	0	13	n	0.36	9	16	9	16	y	0.31	5	11	5	11	y	0.12	4	29	4	29	y	0.0232157647114792	3.22697957976598	up	ENSMUSG00000023800.16	Tiam2	chr17	protein_coding	T cell lymphoma invasion and metastasis 2
known_NIR_8358	chr17	36212946	36215182	-	36212946;36215068	36215000;36215182	ES	ENSMUST00000061052.12	known	0.33	13	26.0	13	22;30	y	0.22	2	7.0	2	6;8	y	0.40	13	19.5	13	17;22	y	0.37	8	13.5	8	12;15	y	0.57	19	14.5	19	11;18	y	0.42	19	26.5	19	29;24	y	0.50	12	12.0	12	10;14	y	0.61	24	15.5	24	12;19	y	0.0145933828972153	-3.39880842857864	down	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8359	chr17	36212946	36215182	-	36215068	36215182	3pMXE	ENSMUST00000140990.8	known	0.30	13	30	13	30	y	0.20	2	8	2	8	y	0.37	13	22	13	22	y	0.35	8	15	8	15	y	0.51	19	18	19	18	y	0.44	19	24	19	24	y	0.46	12	14	12	14	y	0.56	24	19	24	19	y	0.00854086159718033	-4.03008417291854	down	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8361	chr17	36212946;36213330	36213248;36215182	-	36212946	36215182	cassetteExon	ENSMUST00000077494.13	known	0.43	10.0	13	17;3	13	y	0.43	1.5	2	2;1	2	n	0.41	9.0	13	11;7	13	y	0.47	7.0	8	9;5	8	y	0.33	9.5	19	11;8	19	y	0.32	9.0	19	13;5	19	y	0.37	7.0	12	8;6	12	y	0.27	9.0	24	10;8	24	y	0.0055847341518537	4.66628262628691	up	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
known_NIR_8396	chr17	37269687	37275249	+	37269594	37275249	A5SS	ENSMUST00000040177.7	known	0.06	5	76	5	76	y	0.00	0	34	0	34	n	0.04	3	68	3	68	y	0.00	0	41	0	41	n	0.05	2	42	2	42	y	0.09	5	52	5	52	y	0.06	3	51	3	51	y	0.10	7	62	7	62	y	0.0419797654481047	-2.61116483933547	down	ENSMUSG00000036214.15	Polr1has	chr17	protein_coding	RNA polymerase I subunit H, antisense
known_NIR_8452	chr17	46329805	46334991	-	46329805	46331917	5pMXE	ENSMUST00000143985.2	known	0.11	64	508	64	508	y	0.09	12	128	12	128	y	0.11	40	313	40	313	y	0.14	29	171	29	171	y	0.07	25	344	25	344	y	0.08	38	420	38	420	y	0.08	30	353	30	353	y	0.07	35	469	35	469	y	0.0312781410896991	3.50324524872685	up	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8453	chr17	46329805;46332048	46331917;46334991	-	46329805	46334991	cassetteExon	ENSMUST00000024747.14	known	0.84	339.0	64	508;170	64	y	0.88	91.5	12	128;55	12	y	0.85	221.5	40	313;130	40	y	0.80	117.5	29	171;64	29	y	0.90	234.0	25	344;124	25	y	0.89	294.0	38	420;168	38	y	0.89	242.5	30	353;132	30	y	0.90	311.5	35	469;154	35	y	0.0480347340749334	-3.13049516849971	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8454	chr17	46329805;46333274	46333203;46334991	-	46329805	46334991	cassetteExon	ENSMUST00000024747.14	known	0.39	41.0	64	1;81	64	n	0.55	14.5	12	0;29	12	n	0.43	30.5	40	1;60	40	n	0.34	15.0	29	0;30	29	n	0.62	40.5	25	1;80	25	n	0.55	47.0	38	1;93	38	n	0.61	46.0	30	5;87	30	y	0.61	54.0	35	4;104	35	y	0.0259012296030664	-3.57400065234793	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8455	chr17	46329805;46333274	46333203;46334991	-	46329805;46332048	46331917;46334991	MXE	ENSMUST00000071648.12	known	0.11	41.0	339.0	1;81	508;170	n	0.14	14.5	91.5	0;29	128;55	n	0.12	30.5	221.5	1;60	313;130	n	0.11	15.0	117.5	0;30	171;64	n	0.15	40.5	234.0	1;80	344;124	n	0.14	47.0	294.0	1;93	420;168	n	0.16	46.0	242.5	5;87	353;132	y	0.15	54.0	311.5	4;104	469;154	y	0.0154590667337747	-3.67423461417477	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8458	chr17	46332048;46333274	46333221;46334991	-	46332048	46334991	cassetteExon	ENSMUST00000071648.12	known	0.19	40.5	170	0;81	170	n	0.21	14.5	55	0;29	55	n	0.19	30.0	130	0;60	130	n	0.19	15.0	64	0;30	64	n	0.24	40.0	124	0;80	124	n	0.23	49.5	168	6;93	168	y	0.25	43.5	132	0;87	132	n	0.25	52.0	154	0;104	154	n	0.00047553216038563	-6.86199362588884	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8459	chr17	46472252	46472643	+	46472252	46474409	A3SS	ENSMUST00000024748.14	known	0.27	11	30	11	30	y	0.29	6	15	6	15	y	0.19	7	29	7	29	y	0.21	6	23	6	23	y	0.20	5	20	5	20	y	0.17	5	24	5	24	y	0.09	2	21	2	21	y	0.09	4	40	4	40	y	0.0327696482205815	2.78326135653873	up	ENSMUSG00000023952.14	Gtpbp2	chr17	protein_coding	GTP binding protein 2
known_NIR_8489	chr17	46981111;46983773	46983451;46985123	-	46981111	46985123	cassetteExon	ENSMUST00000233247.2	known	0.88	30.0	4	1;59	4	n	0.80	24.0	6	2;46	6	y	0.74	32.0	11	2;62	11	y	0.66	13.5	7	0;27	7	n	0.59	8.5	6	0;17	6	n	0.68	29.5	14	0;59	14	n	0.49	15.5	16	0;31	16	n	0.65	16.5	9	1;32	9	n	0.0372065207293225	2.67430089732471	up	ENSMUSG00000023971.10	Rrp36	chr17	protein_coding	ribosomal RNA processing 36
known_NIR_8533	chr17	49735592	49742123	+	49740324	49742123	5pMXE	ENSMUST00000174268.2	known	0.00	1	229	1	229	n	0.00	0	137	0	137	n	0.01	2	238	2	238	y	0.00	0	134	0	134	n	0.01	2	199	2	199	y	0.01	2	222	2	222	y	0.01	1	176	1	176	n	0.02	4	209	4	209	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000064120.15	Mocs1	chr17	protein_coding	molybdenum cofactor synthesis 1
known_NIR_8551	chr17	56403276	56403851	+	56403276	56403848	A3SS	ENSMUST00000226053.2	known	0.27	8	22	8	22	y	0.20	4	16	4	16	y	0.26	9	25	9	25	y	0.23	3	10	3	10	y	0.17	4	19	4	19	y	0.11	3	25	3	25	y	0.14	4	25	4	25	y	0.20	3	12	3	12	y	0.015404094248349	3.4	up	ENSMUSG00000002833.12	Hdgfl2	chr17	protein_coding	HDGF like 2
known_NIR_8567	chr17	56904815	56905644	+	56904815	56906623	A3SS	ENSMUST00000182951.8	known	0.82	42	9	42	9	y	0.79	30	8	30	8	y	0.82	47	10	47	10	y	0.86	30	5	30	5	y	0.88	43	6	43	6	y	0.93	40	3	40	3	y	0.93	28	2	28	2	y	0.96	52	2	52	2	y	0.00360787624846147	-4.67238363484516	down	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8568	chr17	56904815	56906623	+	56904815;56906220	56905644;56906623	ES	ENSMUST00000182533.8	known	0.15	9	50.5	9	42;59	y	0.22	8	28.5	8	30;27	y	0.16	10	54.0	10	47;61	y	0.15	5	28.0	5	30;26	y	0.14	6	37.0	6	43;31	y	0.05	3	55.5	3	40;71	y	0.06	2	34.0	2	28;40	y	0.04	2	49.5	2	52;47	y	0.0158954140563443	3.43375853466993	up	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8569	chr17	56906220	56906623	+	56904815	56906623	A5SS	ENSMUST00000182951.8	known	0.87	59	9	59	9	y	0.77	27	8	27	8	y	0.86	61	10	61	10	y	0.84	26	5	26	5	y	0.84	31	6	31	6	y	0.96	71	3	71	3	y	0.95	40	2	40	2	y	0.96	47	2	47	2	y	0.0488328676543417	-2.50404253311193	down	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8586	chr17	57352640	57354186	-	57352663	57354186	A3SS	ENSMUST00000040280.14	known	0.02	14	845	14	845	y	0.04	7	170	7	170	y	0.03	17	641	17	641	y	0.02	5	284	5	284	y	0.01	4	442	4	442	y	0.01	9	759	9	759	y	0.02	8	493	8	493	y	0.01	6	646	6	646	y	0.0435576347221575	2.77746029931765	up	ENSMUSG00000046329.15	Slc25a23	chr17	protein_coding	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
known_NIR_8618	chr17	66161194	66165968	-	66161194;66164788	66164657;66165968	ES	ENSMUST00000024905.11	known	0.00	0	66.0	0	63;69	n	0.03	1	39.0	1	40;38	n	0.00	0	60.0	0	64;56	n	0.03	1	31.5	1	24;39	n	0.06	2	32.0	2	31;33	y	0.03	2	55.5	2	58;53	y	0.05	2	41.0	2	43;39	y	0.05	2	39.5	2	46;33	y	0.0257087970199699	-3.03614588222994	down	ENSMUSG00000024096.18	Ralbp1	chr17	protein_coding	ralA binding protein 1
known_NIR_8630	chr17	69690415	69692416	+	69690264	69692416	A5SS	ENSMUST00000112674.8	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	0.86	6	1	6	1	n	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.67	4	2	4	2	n	0.50	6	6	6	6	y	0.50	3	3	3	3	n	0.00370424423720125	4.83244683083853	up	ENSMUSG00000049672.16	Zbtb14	chr17	protein_coding	zinc finger and BTB domain containing 14
known_NIR_8656	chr17	7251590	7256121	+	7252512	7256121	A5SS	ENSMUST00000232106.2	known	0.18	6	27	6	27	y	0.14	3	19	3	19	y	0.18	7	32	7	32	y	0.00	0	17	0	17	n	0.45	14	17	14	17	y	0.40	20	30	20	30	y	0.28	11	29	11	29	y	0.27	7	19	7	19	y	0.0107903068483262	-3.64598637273879	down	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8657	chr17	7251590;7252512	7252455;7256121	+	7251590	7256121	cassetteExon	ENSMUST00000231963.2	known	0.86	37.0	6	47;27	6	y	0.86	18.0	3	17;19	3	y	0.85	39.0	7	46;32	7	y	1.00	23.5	0	30;17	0	n	0.67	29.0	14	41;17	14	y	0.64	35.0	20	40;30	20	y	0.77	36.0	11	43;29	11	y	0.80	28.0	7	37;19	7	y	0.0170300353520753	3.27582498025722	up	ENSMUSG00000094724.9	Rnaset2b	chr17	protein_coding	ribonuclease T2B
known_NIR_8687	chr17	74663164	74674243	+	74663164;74666344	74666249;74674243	ES	ENSMUST00000224711.2	known	0.13	10	66.5	10	75;58	y	0.16	3	16.0	3	16;16	y	0.15	10	55.5	10	47;64	y	0.12	6	43.0	6	40;46	y	0.05	2	40.0	2	40;40	y	0.06	4	61.0	4	66;56	y	0.12	5	35.0	5	35;35	y	0.05	3	62.5	3	64;61	y	0.0168196194762685	3.65563077506965	up	ENSMUSG00000024068.9	Spast	chr17	protein_coding	spastin
known_NIR_8727	chr17	80351994;80352451	80352369;80356037	-	80351994	80356037	cassetteExon	ENSMUST00000184635.8	known	0.16	12.0	64	10;14	64	y	0.17	4.5	22	5;4	22	y	0.11	6.0	48	3;9	48	y	0.19	6.0	26	5;7	26	y	0.10	5.5	48	5;6	48	y	0.05	3.0	52	4;2	52	y	0.10	4.5	41	3;6	41	y	0.12	8.0	58	6;10	58	y	0.0289217246443832	2.87121967794601	up	ENSMUSG00000024095.16	Hnrnpll	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein L-like
known_NIR_8741	chr17	8391840	8401060	+	8391840	8394351	3pMXE	ENSMUST00000162586.2	known	0.91	32	3	32	3	y	0.88	22	3	22	3	y	0.89	42	5	42	5	y	0.93	25	2	25	2	y	1.00	28	0	28	0	n	0.92	35	3	35	3	y	1.00	25	0	25	0	n	1.00	42	0	42	0	n	0.0215564306587065	-3.38910840441736	down	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
known_NIR_8777	chr17	87565517	87571569	-	87565517	87566178	A5SS&ES	ENSMUST00000129616.8	known	0.06	17	260	17	260	y	0.06	15	233	15	233	y	0.08	18	209	18	209	y	0.10	23	207	23	207	y	0.05	7	123	7	123	y	0.03	6	167	6	167	y	0.05	8	145	8	145	y	0.04	7	151	7	151	y	0.0339390678350574	3.03614588222994	up	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8786	chr17	87565517;87566309	87566178;87573263	-	87565517;87571793	87571569;87573263	MXE	ENSMUST00000144236.9	known	0.93	184.0	14.0	260;108	17;11	y	0.93	156.0	11.5	233;79	15;8	y	0.93	138.5	10.5	209;68	18;3	y	0.90	142.0	15.5	207;77	23;8	y	0.95	83.5	4.0	123;44	7;1	n	0.94	126.0	8.0	167;85	6;10	y	0.96	98.0	4.0	145;51	8;0	n	0.95	107.5	5.5	151;64	7;4	y	0.0261377052147613	-3.22047024073014	down	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8787	chr17	87565517;87571793	87571569;87573263	-	87565517	87573263	cassetteExon	ENSMUST00000024963.11	known	0.04	14.0	372	17;11	372	y	0.05	11.5	219	15;8	219	y	0.04	10.5	276	18;3	276	y	0.06	15.5	223	23;8	223	y	0.03	4.0	140	7;1	140	n	0.03	8.0	248	6;10	248	y	0.02	4.0	180	8;0	180	n	0.03	5.5	195	7;4	195	y	0.0166979601915548	3.70328039909021	up	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8790	chr17	87566309;87571793	87571569;87573263	-	87566309	87573263	cassetteExon	ENSMUST00000151155.8	known	0.08	9.5	108	8;11	108	y	0.07	6.0	79	4;8	79	y	0.07	5.0	68	7;3	68	y	0.07	6.0	77	4;8	77	y	0.06	3.0	44	5;1	44	n	0.06	5.0	85	0;10	85	n	0.05	2.5	51	5;0	51	n	0.07	4.5	64	5;4	64	y	0.0478566196408533	2.61116483933547	up	ENSMUSG00000024150.13	Mcfd2	chr17	protein_coding	multiple coagulation factor deficiency 2
known_NIR_8854	chr18	14769675	14773314	-	14769675;14770541	14770449;14773314	ES	ENSMUST00000040964.13	known	0.86	41	6.5	41	7;6	y	0.81	24	5.5	24	5;6	y	0.76	27	8.5	27	8;9	y	0.78	23	6.5	23	4;9	y	0.88	43	6.0	43	8;4	y	0.85	37	6.5	37	8;5	y	0.88	38	5.0	38	5;5	y	0.95	42	2.0	42	0;4	n	0.0280689045762029	-2.88022760575412	down	ENSMUSG00000037013.18	Ss18	chr18	protein_coding	SS18, nBAF chromatin remodeling complex subunit
known_NIR_8877	chr18	24604037	24604119	+	24604037	24608582	A3SS	ENSMUST00000234303.2	known	0.98	43	1	43	1	n	1.00	15	0	15	0	n	0.97	33	1	33	1	n	1.00	6	0	6	0	n	0.90	18	2	18	2	y	0.97	29	1	29	1	n	0.86	25	4	25	4	y	0.93	39	3	39	3	y	0.0469224451384276	2.96495206817084	up	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
known_NIR_8883	chr18	31813724	31815063	+	31813724	31815060	A3SS	ENSMUST00000235017.2	known	0.50	18	18	18	18	y	0.48	10	11	10	11	y	0.39	7	11	7	11	y	0.42	5	7	5	7	y	0.59	10	7	10	7	y	0.57	12	9	12	9	y	0.64	14	8	14	8	y	0.70	14	6	14	6	y	0.00389312570012769	-4.58621627205036	down	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
known_NIR_8894	chr18	32269000	32271001	-	32269000	32271182	A5SS	ENSMUST00000234651.2	known	0.02	9	578	9	578	y	0.01	3	206	3	206	y	0.01	6	592	6	592	y	0.01	3	326	3	326	y	0.03	14	516	14	516	y	0.03	22	790	22	790	y	0.02	12	585	12	585	y	0.02	15	724	15	724	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8897	chr18	32270663;32271000	32270830;32271182	-	32270663	32271182	cassetteExon	ENSMUST00000234386.2	known	0.28	32.0	84	39;25	84	y	0.27	10.5	28	13;8	28	y	0.22	27.5	98	30;25	98	y	0.27	11.5	31	8;15	31	y	0.09	8.0	78	12;4	78	y	0.14	14.0	89	12;16	89	y	0.11	9.0	70	10;8	70	y	0.16	16.5	84	24;9	84	y	0.000654270267818775	6.54846187598099	up	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8898	chr18	32271000	32271182	-	32269000	32271182	A3SS	ENSMUST00000234651.2	known	0.04	25	578	25	578	y	0.04	8	206	8	206	y	0.04	25	592	25	592	y	0.04	15	326	15	326	y	0.01	4	516	4	516	y	0.02	16	790	16	790	y	0.01	8	585	8	585	y	0.01	9	724	9	724	y	0.00160886712173925	11	up	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8901	chr18	32558020	32565036	+	32558020;32564795	32564724;32565036	ES	ENSMUST00000234857.2	known	0.51	19	18.5	19	21;16	y	0.71	15	6.0	15	6;6	y	0.55	58	47.5	58	41;54	y	0.57	15	11.5	15	11;12	y	0.79	15	4.0	15	2;6	y	0.74	21	7.5	21	7;8	y	0.69	22	10.0	22	11;9	y	0.68	25	11.5	25	6;17	y	0.0403752269287993	-2.78151794983659	down	ENSMUSG00000024381.17	Bin1	chr18	protein_coding	bridging integrator 1
known_NIR_8907	chr18	3273578	3280949	-	3273578	3295040	A5SS	ENSMUST00000154470.8	known	0.87	41	6	41	6	y	0.83	15	3	15	3	y	0.78	38	11	38	11	y	0.82	23	5	23	5	y	0.86	32	5	32	5	y	0.93	42	3	42	3	y	1.00	25	0	25	0	n	0.92	58	5	58	5	y	0.0290611599781092	-3.00357568660885	down	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8930	chr18	3276729	3295040	-	3276729;3288092	3287904;3295040	ES	ENSMUST00000150235.8	known	0.40	2	3.0	2	2;4	n	0.00	0	4.5	0	0;9	n	0.18	1	4.5	1	4;5	n	0.25	1	3.0	1	0;6	n	0.57	2	1.5	2	0;3	n	0.40	2	3.0	2	5;1	n	0.32	3	6.5	3	2;11	y	0.67	5	2.5	5	1;4	n	0.049310650473281	-2.45826498363543	down	ENSMUSG00000063889.17	Crem	chr18	protein_coding	cAMP responsive element modulator
known_NIR_8966	chr18	34738741	34739728	-	34738741;34739519	34739473;34739728	ES	ENSMUST00000003876.10	known	0.23	11	37.5	11	32;43	y	0.14	2	12.5	2	12;13	y	0.15	5	27.5	5	31;24	y	0.19	5	21.0	5	19;23	y	0.06	2	29.0	2	27;31	y	0.10	2	18.5	2	17;20	y	0.08	2	22.0	2	18;26	y	0.10	4	36.5	4	34;39	y	0.0134243593859858	4.07768688895708	up	ENSMUSG00000003778.15	Brd8	chr18	protein_coding	bromodomain containing 8
known_NIR_9043	chr18	36787319	36788476	+	36787319	36788527	A3SS	ENSMUST00000006205.14	known	0.75	78	26	78	26	y	0.75	36	12	36	12	y	0.82	71	16	71	16	y	0.76	28	9	28	9	y	0.69	31	14	31	14	y	0.70	58	25	58	25	y	0.63	37	22	37	22	y	0.70	40	17	40	17	y	0.00917221617284492	3.78075622687563	up	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9149	chr18	50055782;50059048	50058986;50064978	+	50055782	50064978	cassetteExon	ENSMUST00000180611.8	known	0.04	1.0	27	1;1	27	n	0.00	0.0	8	0;0	8	n	0.00	0.0	16	0;0	16	n	0.00	0.0	19	0;0	19	n	0.10	1.5	13	3;0	13	n	0.12	3.0	21	3;3	21	y	0.07	1.0	14	1;1	14	n	0.09	1.5	15	1;2	15	n	0.00106970194842277	-5.88897274573418	down	ENSMUSG00000037416.14	Dmxl1	chr18	protein_coding	Dmx-like 1
known_NIR_9159	chr18	54081226	54086317	+	54081226	54081717	3pMXE	ENSMUST00000236399.2	known	0.83	122	25	122	25	y	0.82	69	15	69	15	y	0.80	113	28	113	28	y	0.85	78	14	78	14	y	0.92	87	8	87	8	y	0.94	109	7	109	7	y	0.89	104	13	104	13	y	0.86	117	19	117	19	y	0.0131007548478906	-3.80623661717577	down	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
known_NIR_9160	chr18	54081226	54086317	+	54081226;54081740	54081717;54086317	ES	ENSMUST00000069597.8	known	0.82	122	26.0	122	25;27	y	0.83	69	14.0	69	15;13	y	0.80	113	27.5	113	28;27	y	0.85	78	14.0	78	14;14	y	0.92	87	8.0	87	8;8	y	0.93	109	8.5	109	7;10	y	0.90	104	11.0	104	13;9	y	0.87	117	17.5	117	19;16	y	0.0036360470953868	-4.75270820628804	down	ENSMUSG00000073563.4	Csnk1g3	chr18	protein_coding	casein kinase 1, gamma 3
known_NIR_9162	chr18	56533647	56602605	+	56565429	56602605	5pMXE	ENSMUST00000070166.6	known	0.46	48	56	48	56	y	0.22	12	42	12	42	y	0.51	42	40	42	40	y	0.46	27	32	27	32	y	0.75	39	13	39	13	y	0.58	62	44	62	44	y	0.55	39	32	39	32	y	0.70	55	24	55	24	y	0.0311335648121338	-2.87690024573732	down	ENSMUSG00000001700.11	Gramd3	chr18	protein_coding	GRAM domain containing 3
known_NIR_9173	chr18	6052923;6056993	6056979;6057517	-	6052923	6057517	cassetteExon	ENSMUST00000182066.8	known	0.20	5.0	20	5;5	20	y	0.26	2.5	7	2;3	7	y	0.28	5.5	14	3;8	14	y	0.21	4.0	15	5;3	15	y	0.33	5.0	10	6;4	10	y	0.30	12.0	28	14;10	28	y	0.30	6.0	14	6;6	14	y	0.41	12.0	17	10;14	17	y	0.0261025511339401	-3.01190480867851	down	ENSMUSG00000041225.17	Arhgap12	chr18	protein_coding	Rho GTPase activating protein 12
known_NIR_9198	chr18	61702633;61705028	61704945;61708481	+	61702633	61708481	cassetteExon	ENSMUST00000165123.8	known	0.12	21.0	147	15;27	147	y	0.19	22.0	95	17;27	95	y	0.14	22.5	133	16;29	133	y	0.16	17.5	93	13;22	93	y	0.11	13.0	102	12;14	102	y	0.08	13.0	153	12;14	153	y	0.07	7.5	98	7;8	98	y	0.12	18.5	141	13;24	141	y	0.0251188787751143	3.01140688525669	up	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9231	chr18	6489330	6490463	-	6462991	6490463	A3SS	ENSMUST00000028100.13	known	0.15	3	17	3	17	y	0.33	5	10	5	10	y	0.24	4	13	4	13	y	0.15	3	17	3	17	y	0.64	9	5	9	5	y	0.50	11	11	11	11	y	0.50	12	12	12	12	y	0.38	6	10	6	10	y	0.00622510767360303	-4.20200854764075	down	ENSMUSG00000024240.14	Epc1	chr18	protein_coding	enhancer of polycomb homolog 1
known_NIR_9232	chr18	65130492	65207795	+	65157060	65207795	5pMXE	ENSMUST00000080418.7	known	0.02	1	42	1	42	n	0.00	0	19	0	19	n	0.00	0	33	0	33	n	0.06	2	29	2	29	y	0.11	2	16	2	16	y	0.17	5	24	5	24	y	0.19	4	17	4	17	y	0.09	3	30	3	30	y	0.00788519053339231	-4.33389071108769	down	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9233	chr18	65159155	65207795	+	65130492	65207795	A5SS	ENSMUST00000235343.2	known	0.89	8	1	8	1	n	1.00	5	0	5	0	n	1.00	10	0	10	0	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	0.77	17	5	17	5	y	0.56	5	4	5	4	n	0.73	8	3	8	3	y	0.0363238726840791	2.71535846654823	up	ENSMUSG00000024589.19	Nedd4l	chr18	protein_coding	neural precursor cell expressed, developmentally down-regulated gene 4-like
known_NIR_9293	chr18	7870027	7871531	+	7870027	7871549	A3SS	ENSMUST00000171042.8	known	0.08	3	35	3	35	y	0.13	4	26	4	26	y	0.09	4	43	4	43	y	0.07	3	39	3	39	y	0.03	1	34	1	34	n	0.00	0	54	0	54	n	0.07	2	27	2	27	y	0.04	2	47	2	47	y	0.0260475131012122	2.94484823845661	up	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9303	chr18	80250558	80251325	+	80250558	80261919	A3SS	ENSMUST00000145963.9	known	0.10	9	79	9	79	y	0.13	6	41	6	41	y	0.08	7	86	7	86	y	0.05	2	42	2	42	y	0.04	3	66	3	66	y	0.04	3	68	3	68	y	0.02	2	88	2	88	y	0.02	1	65	1	65	n	0.0316048919533067	3.3717089216941	up	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
known_NIR_9306	chr18	80258791	80261919	+	80250558	80261919	A5SS	ENSMUST00000145963.9	known	0.05	4	79	4	79	y	0.00	0	41	0	41	n	0.04	4	86	4	86	y	0.00	0	42	0	42	n	0.08	6	66	6	66	y	0.11	8	68	8	68	y	0.09	9	88	9	88	y	0.06	4	65	4	65	y	0.0107316385767948	-3.72677996249965	down	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
known_NIR_9313	chr18	80299618	80299997	+	80299533	80299997	A5SS	ENSMUST00000129043.8	known	0.80	90	23	90	23	y	0.75	12	4	12	4	y	0.81	61	14	61	14	y	0.77	37	11	37	11	y	0.86	64	10	64	10	y	0.83	100	21	100	21	y	0.90	84	9	84	9	y	0.86	99	16	99	16	y	0.00697643678949298	-4.02099751960028	down	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9372	chr19	10509363;10509698	10509495;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.38	10.0	16	10;10	16	y	0.43	4.5	6	3;6	6	y	0.32	7.0	15	5;9	15	y	0.33	4.0	8	4;4	8	y	0.13	2.0	13	0;4	13	n	0.14	3.5	22	4;3	22	y	0.30	3.5	8	4;3	8	y	0.30	6.0	14	8;4	14	y	0.0453206067575975	2.73214523479052	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9373	chr19	10509363;10509698	10509622;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.32	7.5	16	5;10	16	y	0.37	3.5	6	1;6	6	n	0.32	7.0	15	5;9	15	y	0.38	5.0	8	6;4	8	y	0.21	3.5	13	3;4	13	y	0.12	3.0	22	3;3	22	y	0.16	1.5	8	0;3	8	n	0.15	2.5	14	1;4	14	n	0.000299137954303438	7.61509623850214	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9375	chr19	10509363;10509698	10509625;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.30	7.0	16	4;10	16	y	0.33	3.0	6	0;6	6	n	0.25	5.0	15	1;9	15	n	0.20	2.0	8	0;4	8	n	0.16	2.5	13	1;4	13	n	0.12	3.0	22	3;3	22	y	0.24	2.5	8	2;3	8	y	0.18	3.0	14	2;4	14	y	0.0470948857114755	2.50202230344504	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9402	chr19	10585836;10587191	10587156;10588066	+	10585836	10588066	cassetteExon	ENSMUST00000025649.10	known	0.03	4.5	168	5;4	168	y	0.04	4.5	122	5;4	122	y	0.02	4.0	163	4;4	163	y	0.05	5.5	101	7;4	101	y	0.02	2.5	99	3;2	99	y	0.02	3.0	166	4;2	166	y	0.01	1.0	86	2;0	86	n	0.00	0.5	169	1;0	169	n	0.0340084674736242	2.79976957577215	up	ENSMUSG00000024740.11	Ddb1	chr19	protein_coding	damage specific DNA binding protein 1
known_NIR_9458	chr19	26729441;26737331	26737278;26748338	+	26729441	26748338	cassetteExon	ENSMUST00000176769.9	known	0.44	58.0	73	58;58	73	y	0.44	21.5	27	23;20	27	y	0.49	63.0	65	69;57	65	y	0.53	34.5	30	43;26	30	y	0.59	63.0	44	53;73	44	y	0.57	79.5	59	83;76	59	y	0.62	75.5	47	79;72	47	y	0.59	83.0	58	87;79	58	y	0.00690148161085446	-4.873672965233	down	ENSMUSG00000024921.18	Smarca2	chr19	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
known_NIR_9477	chr19	29700905;29707359	29707232;29712516	-	29700905	29712516	cassetteExon	ENSMUST00000175726.8	known	0.26	3.5	10	2;5	10	y	0.20	0.5	2	0;1	2	n	0.23	1.5	5	0;3	5	n	0.29	4.0	10	2;6	10	y	0.17	1.0	5	0;2	5	n	0.09	1.0	10	0;2	10	n	0.11	0.5	4	1;0	4	n	0.19	3.0	13	4;2	13	y	0.0150415116516034	3.42169031353948	up	ENSMUSG00000046138.16	9930021J03Rik	chr19	protein_coding	RIKEN cDNA 9930021J03 gene
known_NIR_9492	chr19	32597586	32611286	+	32573275	32611286	A5SS	ENSMUST00000235594.2	known	0.54	36	31	36	31	y	0.05	1	21	1	21	n	0.46	36	43	36	43	y	0.14	3	18	3	18	y	0.79	134	36	134	36	y	0.61	110	69	110	69	y	0.66	87	45	87	45	y	0.80	165	42	165	42	y	0.0323497310915962	-3.24879770291169	down	ENSMUSG00000024899.8	Papss2	chr19	protein_coding	3'-phosphoadenosine 5'-phosphosulfate synthase 2
known_NIR_9516	chr19	3576934	3625641	-	3576934;3594255	3594108;3625641	ES	ENSMUST00000025846.16	known	0.26	19	54.5	19	65;44	y	0.30	10	23.0	10	28;18	y	0.27	12	33.0	12	48;18	y	0.31	9	20.5	9	17;24	y	0.26	5	14.0	5	15;13	y	0.22	10	35.0	10	32;38	y	0.18	4	18.5	4	20;17	y	0.18	10	46.0	10	51;41	y	0.020752196838713	3.32649571929558	up	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9517	chr19	3576934	3625641	-	3594255	3625641	A3SS&ES	ENSMUST00000225446.2	known	0.30	19	44	19	44	y	0.36	10	18	10	18	y	0.40	12	18	12	18	y	0.27	9	24	9	24	y	0.28	5	13	5	13	y	0.21	10	38	10	38	y	0.19	4	17	4	17	y	0.20	10	41	10	41	y	0.0229887673897566	3.1532073921026	up	ENSMUSG00000024908.16	Ppp6r3	chr19	protein_coding	protein phosphatase 6, regulatory subunit 3
known_NIR_9530	chr19	37103788	37116531	-	37103788	37116462	A5SS	ENSMUST00000079754.11	known	0.60	9	6	9	6	y	0.50	2	2	2	2	n	0.67	8	4	8	4	y	0.40	4	6	4	6	y	0.78	7	2	7	2	n	0.80	12	3	12	3	y	1.00	11	0	11	0	n	0.67	8	4	8	4	y	0.0252534955527819	-2.98240902617162	down	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
known_NIR_9543	chr19	38113095	38113206	-	38113095	38113403	A5SS	ENSMUST00000025951.14	known	0.97	5431	152	5431	152	y	0.98	1091	20	1091	20	y	0.97	5098	150	5098	150	y	0.98	1692	39	1692	39	y	0.96	4180	157	4180	157	y	0.96	5967	264	5967	264	y	0.96	5255	212	5255	212	y	0.97	4790	163	4790	163	y	0.0174670498044487	3.2732683535399	up	ENSMUSG00000024990.14	Rbp4	chr19	protein_coding	retinol binding protein 4, plasma
known_NIR_9552	chr19	3832852	3836389	+	3818340	3836389	A5SS	ENSMUST00000052699.13	known	0.14	2	12	2	12	y	0.20	1	4	1	4	n	0.38	5	8	5	8	y	0.14	1	6	1	6	n	0.50	3	3	3	3	n	0.44	7	9	7	9	y	0.40	2	3	2	3	n	0.30	3	7	3	7	y	0.0357906751382769	-2.76001742028327	down	ENSMUSG00000045098.20	Kmt5b	chr19	protein_coding	lysine methyltransferase 5B
known_NIR_9579	chr19	39792303	39795610	-	39792374	39795610	A3SS	ENSMUST00000160476.9	known	1.00	2	0	2	0	n	-	-	-	-	-	-	1.00	3	0	3	0	n	-	-	-	-	-	-	0.10	1	9	1	9	n	0.50	2	2	2	2	n	0.44	4	5	4	5	n	0.20	1	4	1	4	n	0.00544980771948809	7.23316537338124	up	ENSMUSG00000025004.17	Cyp2c40	chr19	protein_coding	cytochrome P450, family 2, subfamily c, polypeptide 40
known_NIR_9600	chr19	40362061	40370965	-	40362061;40365460	40365428;40370965	ES	ENSMUST00000226047.2	known	0.95	28	1.5	28	0;3	n	0.92	11	1.0	11	0;2	n	0.86	12	2.0	12	0;4	n	0.89	25	3.0	25	1;5	n	0.89	4	0.5	4	0;1	n	0.83	17	3.5	17	4;3	y	0.78	7	2.0	7	0;4	n	0.81	15	3.5	15	3;4	y	0.043989457006181	2.56265451781479	up	ENSMUSG00000025006.19	Sorbs1	chr19	protein_coding	sorbin and SH3 domain containing 1
known_NIR_9630	chr19	4147733	4147817	+	4147507	4147817	A5SS	ENSMUST00000025779.11	known	0.22	66	237	66	237	y	0.23	35	114	35	114	y	0.21	35	134	35	134	y	0.29	55	136	55	136	y	0.15	27	152	27	152	y	0.15	27	150	27	150	y	0.16	35	183	35	183	y	0.12	26	188	26	188	y	0.00809327639210596	4.63709152390236	up	ENSMUSG00000024856.11	Cdk2ap2	chr19	protein_coding	CDK2-associated protein 2
known_NIR_9631	chr19	4147907	4148005	+	4147917	4148005	A5SS	ENSMUST00000025779.11	known	0.05	25	459	25	459	y	0.08	24	288	24	288	y	0.06	22	326	22	326	y	0.07	20	250	20	250	y	0.04	9	235	9	235	y	0.04	12	265	12	265	y	0.02	7	318	7	318	y	0.03	9	298	9	298	y	0.00801297051076949	4.04411160944866	up	ENSMUSG00000024856.11	Cdk2ap2	chr19	protein_coding	CDK2-associated protein 2
known_NIR_9662	chr19	4198728	4199341	+	4198721	4199341	A5SS	ENSMUST00000123874.8	known	0.69	27	12	27	12	y	0.69	11	5	11	5	y	0.65	26	14	26	14	y	0.64	7	4	7	4	y	0.76	22	7	22	7	y	0.72	44	17	44	17	y	0.90	28	3	28	3	y	0.87	39	6	39	6	y	0.0382534888749498	-3.2189122858353	down	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9663	chr19	4198728	4199341	+	4198735	4199341	A5SS	ENSMUST00000008893.9	known	0.23	27	90	27	90	y	0.19	11	46	11	46	y	0.29	26	65	26	65	y	0.21	7	26	7	26	y	0.27	22	60	22	60	y	0.34	44	84	44	84	y	0.33	28	57	28	57	y	0.35	39	71	39	71	y	0.0173835077428064	-3.29187053352629	down	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9695	chr19	43749163	43751312	+	43749163	43751342	A3SS	ENSMUST00000026199.14	known	1.00	33	0	33	0	n	1.00	11	0	11	0	n	0.91	52	5	52	5	y	0.87	20	3	20	3	y	0.73	22	8	22	8	y	0.87	45	7	45	7	y	0.83	34	7	34	7	y	0.84	43	8	43	8	y	0.0292738624851722	2.85247272128091	up	ENSMUSG00000025193.15	Cutc	chr19	protein_coding	cutC copper transporter
known_NIR_9731	chr19	45352325;45395025	45394984;45411572	+	45352325	45411572	cassetteExon	ENSMUST00000065601.13	known	0.25	4.0	12	2;6	12	y	0.20	2.5	10	1;4	10	n	0.17	3.0	15	1;5	15	n	0.36	5.0	9	4;6	9	y	0.40	2.0	3	1;3	3	n	0.43	6.0	8	8;4	8	y	0.53	4.5	4	3;6	4	y	0.31	4.0	9	4;4	9	y	0.0314297822263659	-2.79908691326257	down	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
known_NIR_9749	chr19	46067697	46068350	+	46067697	46068347	A3SS	ENSMUST00000165017.2	known	0.60	47	31	47	31	y	0.49	21	22	21	22	y	0.45	13	16	13	16	y	0.64	16	9	16	9	y	0.40	8	12	8	12	y	0.49	25	26	25	26	y	0.32	9	19	9	19	y	0.23	9	30	9	30	y	0.0427400265588298	2.59263718906214	up	ENSMUSG00000015176.12	Nolc1	chr19	protein_coding	nucleolar and coiled-body phosphoprotein 1
known_NIR_9755	chr19	46320079	46320196	-	46320112	46320196	A3SS	ENSMUST00000235485.2	known	0.10	5	46	5	46	y	0.19	4	17	4	17	y	0.09	5	53	5	53	y	0.11	4	31	4	31	y	0.18	4	18	4	18	y	0.21	12	46	12	46	y	0.21	8	30	8	30	y	0.23	15	50	15	50	y	0.0258323712452907	-3.38872302034399	down	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
known_NIR_9777	chr19	46612018	46632792	+	46587732	46632792	A5SS	ENSMUST00000138302.9	known	0.08	10	109	10	109	y	0.09	6	59	6	59	y	0.03	4	123	4	123	y	0.10	8	72	8	72	y	0.00	0	50	0	50	n	0.00	0	85	0	85	n	0.02	1	44	1	44	n	0.00	0	65	0	65	n	0.0158765704701045	4.28660704987056	up	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9778	chr19	46612018	46632792	+	46595198	46632792	A5SS	ENSMUST00000099376.11	known	0.04	10	237	10	237	y	0.06	6	100	6	100	y	0.01	4	267	4	267	y	0.07	8	99	8	99	y	0.00	0	103	0	103	n	0.00	0	180	0	180	n	0.01	1	110	1	110	n	0.00	0	200	0	200	n	0.0463990315271815	3.15682074900988	up	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
known_NIR_9899	chr19	55901077	55905771	+	55901077	55905786	A3SS	ENSMUST00000111662.11	known	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.08	1	12	1	12	n	0.00	0	9	0	9	n	0.22	2	7	2	7	n	0.21	4	15	4	15	y	0.12	2	15	2	15	y	0.05	1	18	1	18	n	0.0395698386129369	-2.8948515141983	down	ENSMUSG00000024985.21	Tcf7l2	chr19	protein_coding	transcription factor 7 like 2, T cell specific, HMG box
known_NIR_9950	chr19	5767224	5770714	-	5767224	5767690	A5SS&ES	ENSMUST00000049295.15	known	0.46	6	7	6	7	y	0.00	0	1	0	1	n	0.33	6	12	6	12	y	0.17	1	5	1	5	n	0.50	2	2	2	2	n	0.80	4	1	4	1	n	1.00	6	0	6	0	n	0.60	3	2	3	2	n	0.0176525668685633	-3.25449609625289	down	ENSMUSG00000024937.16	Ehbp1l1	chr19	protein_coding	EH domain binding protein 1-like 1
known_NIR_9957	chr19	5806959;5807203	5807063;5807339	+	5806959	5807339	cassetteExon	ENSMUST00000081496.6	known	0.16	1.5	8	1;2	8	n	0.11	0.5	4	1;0	4	n	0.24	3.5	11	2;5	11	y	-	-	-	-	-	-	0.00	0.0	3	0;0	3	n	0.00	0.0	5	0;0	5	n	0.00	0.0	1	0;0	1	n	0.00	0.0	4	0;0	4	n	0.0461873051416056	4.49029962226068	up	ENSMUSG00000024940.12	Ltbp3	chr19	protein_coding	latent transforming growth factor beta binding protein 3
known_NIR_9990	chr19	60800111	60803050	+	60800111	60803030	A3SS	ENSMUST00000128357.8	known	0.75	44	15	44	15	y	0.86	32	5	32	5	y	0.87	40	6	40	6	y	0.83	39	8	39	8	y	0.88	30	4	30	4	y	0.92	35	3	35	3	y	0.93	27	2	27	2	y	1.00	33	0	33	0	n	0.0296264830970092	-2.8445989382101	down	ENSMUSG00000024993.16	Dennd10	chr19	protein_coding	DENN domain containing 10
known_NIR_10011	chr19	6114228;6117052	6116998;6117699	-	6114228;6117349	6116341;6117699	MXE	ENSMUST00000161090.8	known	0.03	10.0	299.0	0;20	319;279	n	0.01	1.5	134.5	0;3	126;143	n	0.02	7.0	353.0	1;13	405;301	n	0.02	4.0	174.0	0;8	197;151	n	0.04	14.0	331.5	0;28	367;296	n	0.04	22.5	493.5	0;45	562;425	n	0.04	17.5	389.5	1;34	464;315	n	0.04	14.5	380.5	3;26	470;291	y	0.0162766034594286	-4.89897948556636	down	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10013	chr19	6117052	6117699	-	6117052	6117153	A5SS&ES	ENSMUST00000162549.2	known	0.07	20	273	20	273	y	0.02	3	119	3	119	y	0.04	13	280	13	280	y	0.06	8	134	8	134	y	0.09	28	282	28	282	y	0.11	45	378	45	378	y	0.09	34	338	34	338	y	0.07	26	367	26	367	y	0.0239684944691547	-3.08666041661089	down	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10014	chr19	6117052	6117699	-	6117052;6117349	6117153;6117699	ES	ENSMUST00000159084.8	known	0.07	20	276.0	20	273;279	y	0.02	3	131.0	3	119;143	y	0.04	13	290.5	13	280;301	y	0.05	8	142.5	8	134;151	y	0.09	28	289.0	28	282;296	y	0.10	45	401.5	45	378;425	y	0.09	34	326.5	34	338;315	y	0.07	26	329.0	26	367;291	y	0.0177685467476308	-3.49446242012041	down	ENSMUSG00000024799.17	Tm7sf2	chr19	protein_coding	transmembrane 7 superfamily member 2
known_NIR_10035	chr19	6403220	6403291	+	6403220	6403308	A3SS	ENSMUST00000133696.8	known	0.00	0	35	0	35	n	0.00	0	13	0	13	n	0.00	0	42	0	42	n	0.00	0	10	0	10	n	0.10	2	18	2	18	y	0.05	2	37	2	37	y	0.03	1	36	1	36	n	0.05	2	39	2	39	y	0.0309152072016079	-3.85120444808304	down	ENSMUSG00000024948.16	Map4k2	chr19	protein_coding	mitogen-activated protein kinase kinase kinase kinase 2
known_NIR_10086	chr19	8321777	8321872	-	8315343	8321872	A3SS	ENSMUST00000096269.11	known	0.49	85	88	85	88	y	0.37	7	12	7	12	y	0.35	65	120	65	120	y	0.42	14	19	14	19	y	0.30	77	177	77	177	y	0.24	75	233	75	233	y	0.34	99	192	99	192	y	0.33	112	223	112	223	y	0.0376705482276162	2.73011375710987	up	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
known_NIR_10113	chr19	8920083	8920829	+	8919746	8920829	A5SS	ENSMUST00000096240.3	known	0.03	2	74	2	74	y	0.03	1	33	1	33	n	0.05	3	61	3	61	y	0.03	1	37	1	37	n	0.00	0	37	0	37	n	0.00	0	46	0	46	n	0.00	0	49	0	49	n	0.02	1	61	1	61	n	0.00542395034130875	4.24264068711928	up	ENSMUSG00000071646.10	Mta2	chr19	protein_coding	metastasis-associated gene family, member 2
known_NIR_10220	chr2	119046788	119047110	+	119046788;119047022	119046913;119047110	ES	ENSMUST00000090174.11	known	0.00	0	61.0	0	43;79	n	0.00	0	26.0	0	21;31	n	0.00	0	52.0	0	41;63	n	0.00	0	31.0	0	30;32	n	0.02	1	40.0	1	35;45	n	0.03	2	66.5	2	54;79	y	0.03	2	63.5	2	61;66	y	0.02	1	62.5	1	49;76	n	0.00323903707654442	-8.66025403784439	down	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10221	chr2	119046788	119047110	+	119047022	119047110	A5SS	ENSMUST00000147584.2	known	0.00	0	79	0	79	n	0.00	0	31	0	31	n	0.00	0	63	0	63	n	0.00	0	32	0	32	n	0.02	1	45	1	45	n	0.02	2	79	2	79	y	0.03	2	66	2	66	y	0.01	1	76	1	76	n	0.0162766034594286	-4.89897948556636	down	ENSMUSG00000068580.12	Zfyve19	chr2	protein_coding	zinc finger, FYVE domain containing 19
known_NIR_10233	chr2	119858057	119860624	+	119858057	119860539	A3SS	ENSMUST00000044675.5	known	0.38	3	5	3	5	n	0.22	2	7	2	7	n	0.21	3	11	3	11	y	0.33	1	2	1	2	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00	0	5	0	5	n	0.00	0	9	0	9	n	0.00642444244458882	6.82908219575395	up	ENSMUSG00000098789.8	Jmjd7	chr2	protein_coding	jumonji domain containing 7
known_NIR_10250	chr2	120369973	120385712	-	120369973;120376385	120376324;120385712	ES	ENSMUST00000055241.13	known	0.11	5	42.0	5	25;59	y	0.03	1	36.0	1	30;42	n	0.05	3	53.5	3	40;67	y	0.08	2	22.5	2	11;34	y	0.00	0	22.5	0	20;25	n	0.00	0	37.5	0	26;49	n	0.05	1	18.0	1	15;21	n	0.00	0	40.5	0	39;42	n	0.0471004031878492	2.55744805236402	up	ENSMUSG00000027288.17	Zfp106	chr2	protein_coding	zinc finger protein 106
known_NIR_10252	chr2	120398242	120414750	+	120398287	120414750	A5SS	ENSMUST00000110711.9	known	0.05	6	105	6	105	y	0.09	5	53	5	53	y	0.03	2	66	2	66	y	0.04	2	49	2	49	y	0.12	5	35	5	35	y	0.07	4	56	4	56	y	0.12	6	42	6	42	y	0.11	9	73	9	73	y	0.0255806290931841	-2.95999821013012	down	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
known_NIR_10318	chr2	12404948;12408977	12408809;12410671	-	12404948;12405887	12405836;12410671	MXE	ENSMUST00000129348.2	known	0.05	3.5	61.5	1;6	116;7	n	0.00	0.0	9.0	0;0	16;2	n	0.05	2.0	41.5	2;2	80;3	y	0.00	0.0	20.5	0;0	40;1	n	0.13	6.0	41.5	0;12	78;5	n	0.10	6.0	54.5	3;9	98;11	y	0.07	2.5	33.0	1;4	62;4	n	0.08	4.5	54.5	3;6	103;6	y	0.0118597466124062	-3.57527742918674	down	ENSMUSG00000026767.13	Mindy3	chr2	protein_coding	MINDY lysine 48 deubiquitinase 3
known_NIR_10439	chr2	132398896;132400602	132400527;132406547	-	132398896	132406547	cassetteExon	ENSMUST00000148833.8	known	0.85	86.0	15	69;103	15	y	0.90	77.5	9	65;90	9	y	0.90	109.0	12	97;121	12	y	0.93	49.5	4	39;60	4	y	0.81	90.0	21	75;105	21	y	0.82	161.5	35	125;198	35	y	0.85	66.0	12	50;82	12	y	0.79	104.0	27	87;121	27	y	0.0110992928520423	3.73196144565885	up	ENSMUSG00000027346.16	Gpcpd1	chr2	protein_coding	glycerophosphocholine phosphodiesterase 1
known_NIR_10472	chr2	144398333	144401127	+	144398262	144401127	A5SS	ENSMUST00000028916.15	known	0.17	1	5	1	5	n	0.23	3	10	3	10	y	0.25	3	9	3	9	y	0.16	3	16	3	16	y	0.00	0	10	0	10	n	0.10	1	9	1	9	n	0.00	0	6	0	6	n	0.08	1	11	1	11	n	0.00404495963051095	4.58257569495584	up	ENSMUSG00000027429.17	Sec23b	chr2	protein_coding	SEC23 homolog B, COPII coat complex component
known_NIR_10487	chr2	148523375	148525514	+	148523135	148525514	A5SS	ENSMUST00000028928.8	known	0.28	8	21	8	21	y	0.20	1	4	1	4	n	0.32	6	13	6	13	y	0.13	3	20	3	20	y	0.44	8	10	8	10	y	0.59	13	9	13	9	y	0.55	6	5	6	5	y	0.29	8	20	8	20	y	0.0310139815441057	-2.96170126579685	down	ENSMUSG00000027439.10	Gzf1	chr2	protein_coding	GDNF-inducible zinc finger protein 1
known_NIR_10514	chr2	152542188	152546542	+	152542188	152545915	3pMXE	ENSMUST00000079247.4	known	0.92	996	84	996	84	y	0.90	802	94	802	94	y	0.91	996	93	996	93	y	0.92	746	65	746	65	y	0.93	700	54	700	54	y	0.94	986	59	986	59	y	0.95	977	55	977	55	y	0.95	879	49	879	49	y	0.00441695651352166	-4.43129367525597	down	ENSMUSG00000019188.17	H13	chr2	protein_coding	histocompatibility 13
known_NIR_10515	chr2	152542188;152546114	152545915;152546542	+	152542188	152546542	cassetteExon	ENSMUST00000125366.8	known	0.08	85.5	996	84;87	996	y	0.09	83.5	802	94;73	802	y	0.08	85.5	996	93;78	996	y	0.07	55.0	746	65;45	746	y	0.07	50.5	700	54;47	700	y	0.05	53.5	986	59;48	986	y	0.05	56.5	977	55;58	977	y	0.06	53.0	879	49;57	879	y	0.0121941868183737	3.57623736407562	up	ENSMUSG00000019188.17	H13	chr2	protein_coding	histocompatibility 13
known_NIR_10516	chr2	152624202	152670367	-	152624202	152671347	A5SS	ENSMUST00000007803.12	known	0.01	1	105	1	105	n	0.02	1	55	1	55	n	0.02	2	110	2	110	y	0.01	1	67	1	67	n	0.00	0	70	0	70	n	0.00	0	105	0	105	n	0.00	0	75	0	75	n	0.01	1	74	1	74	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10521	chr2	152672040	152673523	-	152672022	152673523	A3SS	ENSMUST00000007803.12	known	0.32	6	13	6	13	y	0.25	3	9	3	9	y	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.00	0	6	0	6	n	0.00	0	20	0	20	n	0.20	4	16	4	16	y	0.09	1	10	1	10	n	0.0260880897983365	3.09560819408152	up	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10525	chr2	152856202	152857154	-	152856005	152857154	A3SS	ENSMUST00000028972.9	known	0.01	1	76	1	76	n	0.03	1	32	1	32	n	0.01	1	95	1	95	n	0.02	1	41	1	41	n	0.00	0	63	0	63	n	0.00	0	75	0	75	n	0.00	0	62	0	62	n	0.00	0	75	0	75	n	0.0353528470025174	3.65563077506966	up	ENSMUSG00000027472.15	Pdrg1	chr2	protein_coding	p53 and DNA damage regulated 1
known_NIR_10607	chr2	156019305;156019826	156019553;156021097	-	156019305;156020872	156020800;156021097	MXE	ENSMUST00000155837.8	known	0.01	0.5	36.0	0;1	27;45	n	0.00	0.0	21.0	0;0	10;32	n	0.00	0.0	31.5	0;0	26;37	n	0.08	1.5	16.5	2;1	8;25	n	0.13	2.5	17.0	3;2	12;22	y	0.06	1.0	14.5	0;2	11;18	n	0.07	1.5	21.5	0;3	13;30	n	0.13	3.0	20.0	3;3	11;29	y	0.0321220864230581	-2.77746029931765	down	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10609	chr2	156019826	156021097	-	156020872	156021097	3pMXE	ENSMUST00000137340.2	known	0.02	1	45	1	45	n	0.00	0	32	0	32	n	0.00	0	37	0	37	n	0.04	1	25	1	25	n	0.08	2	22	2	22	y	0.10	2	18	2	18	y	0.09	3	30	3	30	y	0.09	3	29	3	29	y	0.00186404475126849	-7.20576692122892	down	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10610	chr2	156019826;156020872	156020800;156021097	-	156019826	156021097	cassetteExon	ENSMUST00000154677.8	known	0.97	30.0	1	15;45	1	n	1.00	20.0	0	8;32	0	n	1.00	25.0	0	13;37	0	n	0.94	15.0	1	5;25	1	n	0.86	12.5	2	3;22	2	y	0.89	15.5	2	13;18	2	y	0.88	23.0	3	16;30	3	y	0.87	20.0	3	11;29	3	y	0.0024952202870958	6.50985032550704	up	ENSMUSG00000027620.17	Rbm39	chr2	protein_coding	RNA binding motif protein 39
known_NIR_10678	chr2	163536076	163545406	+	163500412	163545406	A5SS	ENSMUST00000147385.8	known	0.10	5	47	5	47	y	0.08	3	33	3	33	y	0.11	5	40	5	40	y	0.10	2	18	2	18	y	0.06	1	16	1	16	n	0.05	2	38	2	38	y	0.04	1	23	1	23	n	0.03	1	32	1	32	n	0.00112921907451139	5.82435206036491	up	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10680	chr2	163536076	163545406	+	163501155	163545406	A5SS	ENSMUST00000099105.9	known	0.31	5	11	5	11	y	0.33	3	6	3	6	n	0.28	5	13	5	13	y	0.33	2	4	2	4	n	0.08	1	11	1	11	n	0.14	2	12	2	12	y	0.10	1	9	1	9	n	0.17	1	5	1	5	n	0.000529680835930809	8.13249067507321	up	ENSMUSG00000035268.15	Pkig	chr2	protein_coding	protein kinase inhibitor, gamma
known_NIR_10692	chr2	164404724	164407712	+	164404724	164405228	3pMXE	ENSMUST00000146270.2	known	0.03	4	122	4	122	y	0.02	2	100	2	100	y	0.04	8	175	8	175	y	0.01	1	119	1	119	n	0.00	0	34	0	34	n	0.01	1	110	1	110	n	0.00	0	49	0	49	n	0.00	0	32	0	32	n	0.0327788032416222	3.25041803331577	up	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10693	chr2	164404724;164405371	164405228;164407712	+	164404724	164407712	cassetteExon	ENSMUST00000109344.9	known	0.94	61.5	4	122;1	4	n	0.96	51.0	2	100;2	2	y	0.92	89.0	8	175;3	8	y	0.98	60.0	1	119;1	1	n	1.00	17.0	0	34;0	0	n	0.98	55.5	1	110;1	1	n	1.00	24.5	0	49;0	0	n	1.00	16.0	0	32;0	0	n	0.032778803241622	-3.25041803331577	down	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10694	chr2	164405371	164407712	+	164405371	164405977	3pMXE	ENSMUST00000125051.2	known	0.01	1	124	1	124	n	0.02	2	87	2	87	y	0.02	3	186	3	186	y	0.01	1	98	1	98	n	0.00	0	42	0	42	n	0.01	1	73	1	73	n	0.00	0	56	0	56	n	0.00	0	41	0	41	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10695	chr2	164405371	164407712	+	164405371;164406132	164405977;164407712	ES	ENSMUST00000017867.10	known	0.01	1	114.5	1	124;105	n	0.02	2	91.5	2	87;96	y	0.01	3	204.0	3	186;222	y	0.01	1	113.5	1	98;129	n	0.00	0	39.0	0	42;36	n	0.01	1	91.0	1	73;109	n	0.00	0	52.5	0	56;49	n	0.00	0	42.5	0	41;44	n	0.0300197452875444	2.82842712474619	up	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10696	chr2	164406132	164407712	+	164404724	164407712	A5SS	ENSMUST00000109344.9	known	0.96	105	4	105	4	y	0.98	96	2	96	2	y	0.97	222	8	222	8	y	0.99	129	1	129	1	n	1.00	36	0	36	0	n	0.99	109	1	109	1	n	1.00	49	0	49	0	n	1.00	44	0	44	0	n	0.0327788032416219	-3.25041803331578	down	ENSMUSG00000017723.12	Wfdc2	chr2	protein_coding	WAP four-disulfide core domain 2
known_NIR_10706	chr2	164675116	164675950	+	164675770	164675950	5pMXE	ENSMUST00000146525.2	known	0.05	12	245	12	245	y	0.00	0	120	0	120	n	0.07	16	201	16	201	y	0.03	4	140	4	140	y	0.09	12	116	12	116	y	0.07	18	242	18	242	y	0.13	19	128	19	128	y	0.14	29	185	29	185	y	0.0202481338741427	-3.1436209919735	down	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10707	chr2	164675116;164675770	164675612;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.91	122.5	12	0;245	12	n	1.00	60.0	0	0;120	0	n	0.86	100.5	16	0;201	16	n	0.95	70.0	4	0;140	4	n	0.83	58.0	12	0;116	12	n	0.87	121.5	18	1;242	18	n	0.77	64.0	19	0;128	19	n	0.76	93.5	29	2;185	29	y	0.0214785817799512	3.10524882756994	up	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10708	chr2	164675116;164675770	164675644;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.91	128.5	12	12;245	12	y	1.00	63.0	0	6;120	0	n	0.87	108.0	16	15;201	16	y	0.95	75.5	4	11;140	4	y	0.84	61.0	12	6;116	12	y	0.88	126.5	18	11;242	18	y	0.78	67.5	19	7;128	19	y	0.78	100.5	29	16;185	29	y	0.0233707850075717	3.03620040483674	up	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10709	chr2	164675116;164675770	164675728;164675950	+	164675116	164675950	cassetteExon	ENSMUST00000103093.10	known	0.91	125.5	12	6;245	12	y	1.00	60.0	0	0;120	0	n	0.87	103.5	16	6;201	16	y	0.95	71.0	4	2;140	4	y	0.83	59.5	12	3;116	12	y	0.87	124.5	18	7;242	18	y	0.78	66.0	19	4;128	19	y	0.76	93.0	29	1;185	29	n	0.0170006527682223	3.28619847997273	up	ENSMUSG00000017760.17	Ctsa	chr2	protein_coding	cathepsin A
known_NIR_10728	chr2	165647297	165649439	-	165647297	165649595	A5SS	ENSMUST00000109266.11	known	0.16	5	26	5	26	y	0.08	1	11	1	11	n	0.22	5	18	5	18	y	0.08	1	12	1	12	n	0.50	8	8	8	8	y	0.39	7	11	7	11	y	0.26	6	17	6	17	y	0.47	7	8	7	8	y	0.00780202398269759	-4.25139743675997	down	ENSMUSG00000039671.19	Zmynd8	chr2	protein_coding	zinc finger, MYND-type containing 8
known_NIR_10745	chr2	167293005	167293127	+	167288456	167293127	A5SS	ENSMUST00000047815.13	known	0.07	3	38	3	38	y	0.12	2	15	2	15	y	0.06	2	31	2	31	y	0.04	1	23	1	23	n	0.00	0	21	0	21	n	0.00	0	36	0	36	n	0.06	2	33	2	33	y	0.00	0	29	0	29	n	0.0450004875799938	2.53477833637873	up	ENSMUSG00000039463.15	Slc9a8	chr2	protein_coding	solute carrier family 9 (sodium/hydrogen exchanger), member 8
known_NIR_10753	chr2	167345521	167352796	+	167345521;167349117	167348967;167352796	ES	ENSMUST00000109214.8	known	0.03	6	220.0	6	191;249	y	0.06	6	101.5	6	72;131	y	0.04	8	191.5	8	145;238	y	0.05	6	109.5	6	97;122	y	0.02	2	113.0	2	88;138	y	0.02	4	219.5	4	185;254	y	0.03	4	126.5	4	105;148	y	0.02	5	199.5	5	171;228	y	0.0327788032416222	3.25041803331577	up	ENSMUSG00000006418.18	Rnf114	chr2	protein_coding	ring finger protein 114
known_NIR_10783	chr2	172952798	172955172	+	172952798	172971020	A3SS	ENSMUST00000142207.8	known	0.14	5	32	5	32	y	0.11	8	67	8	67	y	0.14	10	59	10	59	y	0.11	7	56	7	56	y	0.06	2	31	2	31	y	0.04	2	55	2	55	y	0.07	2	26	2	26	y	0.12	3	23	3	23	y	0.0456638318821047	2.7495454169735	up	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
known_NIR_10798	chr2	173458216	173501116	-	173450672	173501116	A3SS	ENSMUST00000148213.2	known	0.20	2	8	2	8	y	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	2	4	2	4	n	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.0205517742787546	6.86751706933987	up	ENSMUSG00000055897.14	Ppp4r1l-ps	chr2	transcribed_unprocessed_pseudogene	protein phosphatase 4, regulatory subunit 1-like, pseudogene
known_NIR_10862	chr2	180902191	180906763	-	180902191	180906774	A5SS	ENSMUST00000049032.13	known	0.00	0	21	0	21	n	0.00	0	15	0	15	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.12	2	15	2	15	y	0.08	2	22	2	22	y	0.15	2	11	2	11	y	0.22	6	21	6	21	y	0.0466044568202294	-2.50442373190754	down	ENSMUSG00000038705.14	Gmeb2	chr2	protein_coding	glucocorticoid modulatory element binding protein 2
known_NIR_10888	chr2	181190634;181190793	181190719;181191066	+	181190634	181191066	cassetteExon	ENSMUST00000072334.12	known	0.44	52.5	68	59;46	68	y	0.39	29.0	45	30;28	45	y	0.41	42.5	61	48;37	61	y	0.42	27.0	38	29;25	38	y	0.56	34.5	27	39;30	27	y	0.47	51.0	58	57;45	58	y	0.48	31.5	34	28;35	34	y	0.54	46.5	40	50;43	40	y	0.0143605563227024	-3.98734933305733	down	ENSMUSG00000000826.17	Dnajc5	chr2	protein_coding	DnaJ heat shock protein family (Hsp40) member C5
known_NIR_10897	chr2	181216830	181223196	-	181216830	181223649	A5SS	ENSMUST00000057816.15	known	0.00	0	24	0	24	n	0.00	0	13	0	13	n	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.11	3	24	3	24	y	0.10	3	26	3	26	y	0.04	1	25	1	25	n	0.06	2	31	2	31	y	0.0183133509094078	-4.69122943243946	down	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
known_NIR_11048	chr2	26277683;26279077	26278598;26279161	-	26277683;26278572	26278504;26279161	MXE	ENSMUST00000028293.12	known	0.08	3.5	39.5	0;7	54;25	n	0.07	1.0	13.0	0;2	18;8	n	0.06	2.5	41.0	2;3	53;29	y	0.12	2.0	15.0	1;3	17;13	n	0.06	1.5	25.0	2;1	29;21	n	0.05	2.0	39.5	1;3	48;31	n	0.04	1.0	27.0	0;2	31;23	n	0.02	0.5	28.0	1;0	39;17	n	0.0498345399976947	2.55117121657312	up	ENSMUSG00000026927.18	Entr1	chr2	protein_coding	endosome associated trafficking regulator 1
known_NIR_11102	chr2	27354205	27365058	-	27354205	27365589	A5SS	ENSMUST00000077737.13	known	0.06	1	16	1	16	n	0.10	1	9	1	9	n	0.11	2	16	2	16	y	0.12	1	7	1	7	n	0.06	1	15	1	15	n	0.00	0	14	0	14	n	0.00	0	9	0	9	n	0.00	0	18	0	18	n	0.00633568476783508	4.13578433212913	up	ENSMUSG00000026918.17	Brd3	chr2	protein_coding	bromodomain containing 3
known_NIR_11206	chr2	31650127	31668346	+	31579954	31668346	A5SS	ENSMUST00000075759.13	known	0.16	3	16	3	16	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.41	7	10	7	10	y	0.31	4	9	4	9	y	0.45	5	6	5	6	y	0.40	10	15	10	15	y	0.000568508712235469	-7.08850060133052	down	ENSMUSG00000026842.17	Abl1	chr2	protein_coding	c-abl oncogene 1, non-receptor tyrosine kinase
known_NIR_11212	chr2	32108771	32109229	+	32108771	32109226	A3SS	ENSMUST00000036691.14	known	0.70	33	14	33	14	y	0.63	19	11	19	11	y	0.69	29	13	29	13	y	0.69	20	9	20	9	y	0.79	22	6	22	6	y	0.70	32	14	32	14	y	0.79	19	5	19	5	y	0.76	32	10	32	10	y	0.0230972813220987	-3.10437886566587	down	ENSMUSG00000039262.17	Prrc2b	chr2	protein_coding	proline-rich coiled-coil 2B
known_NIR_11242	chr2	32311611	32313806	-	32311611	32341079	A5SS	ENSMUST00000028160.15	known	0.96	191	7	191	7	y	0.94	105	7	105	7	y	0.97	171	6	171	6	y	0.94	101	6	101	6	y	0.99	320	3	320	3	y	0.98	487	9	487	9	y	0.96	90	4	90	4	y	0.98	636	10	636	10	y	0.0444277767619917	-2.55376959227626	down	ENSMUSG00000026819.16	Slc25a25	chr2	protein_coding	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
known_NIR_11277	chr2	33345135	33354926	-	33345135	33352278	5pMXE	ENSMUST00000095035.3	known	0.73	16	6	16	6	y	0.77	10	3	10	3	y	0.83	10	2	10	2	y	0.85	11	2	11	2	y	0.93	14	1	14	1	n	0.88	15	2	15	2	y	0.92	12	1	12	1	n	0.86	19	3	19	3	y	0.0248275568812929	-3.19184567106224	down	ENSMUSG00000026788.14	Zbtb43	chr2	protein_coding	zinc finger and BTB domain containing 43
known_NIR_11292	chr2	3437530	3438067	+	3437530	3438026	A3SS	ENSMUST00000100463.10	known	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.40	2	3	2	3	n	0.18	2	9	2	9	y	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.0321907490531857	-3.79147348001732	down	ENSMUSG00000026648.19	Dclre1c	chr2	protein_coding	DNA cross-link repair 1C
known_NIR_11309	chr2	34757049	34764657	-	34757049	34760762	5pMXE	ENSMUST00000028225.12	known	0.03	2	65	2	65	y	0.05	1	20	1	20	n	0.08	5	56	5	56	y	0.03	1	30	1	30	n	0.14	5	32	5	32	y	0.16	13	69	13	69	y	0.10	5	46	5	46	y	0.10	6	52	6	52	y	0.00744782327598888	-4.05885275838946	down	ENSMUSG00000026869.13	Psmd5	chr2	protein_coding	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
known_NIR_11313	chr2	34985935	34990577	-	34985935	34987900	A5SS&ES	ENSMUST00000154817.2	known	0.01	21	1828	21	1828	y	0.01	3	340	3	340	y	0.02	23	1502	23	1502	y	0.02	15	662	15	662	y	0.02	24	1210	24	1210	y	0.03	49	1707	49	1707	y	0.02	20	1206	20	1206	y	0.03	46	1727	46	1727	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11315	chr2	34985935;34988092	34987900;34990577	-	34985935	34990577	cassetteExon	ENSMUST00000134940.9	known	0.98	1194.0	21	1828;560	21	y	0.99	222.0	3	340;104	3	y	0.98	974.0	23	1502;446	23	y	0.97	439.0	15	662;216	15	y	0.97	791.0	24	1210;372	24	y	0.96	1108.0	49	1707;509	49	y	0.97	758.5	20	1206;311	20	y	0.96	1143.0	46	1727;559	46	y	0.0273393097919095	3	up	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11339	chr2	37333468	37359528	+	37333468	37359389	A3SS	ENSMUST00000133434.8	known	0.00	0	14	0	14	n	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.10	1	9	1	9	n	0.29	5	12	5	12	y	0.38	3	5	3	5	n	0.33	2	4	2	4	n	0.0305455974771935	-2.84794916022489	down	ENSMUSG00000035437.16	Rabgap1	chr2	protein_coding	RAB GTPase activating protein 1
known_NIR_11359	chr2	38937778	38940171	-	38937778;38938450	38938322;38940171	ES	ENSMUST00000039165.15	known	0.10	3	27.0	3	33;21	y	0.00	0	21.0	0	23;19	n	0.00	0	18.0	0	15;21	n	0.00	0	22.0	0	19;25	n	0.22	3	10.5	3	16;5	y	0.21	4	15.0	4	18;12	y	0.15	3	16.5	3	17;16	y	0.27	6	16.5	6	20;13	y	0.00175666347138022	-5.34352874909322	down	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
known_NIR_11364	chr2	43489654	43492255	+	43489654;43490808	43490737;43492255	ES	ENSMUST00000028223.9	known	0.07	27	352.5	27	338;367	y	0.04	6	128.0	6	133;123	y	0.07	22	286.5	22	278;295	y	0.08	16	182.0	16	171;193	y	0.09	34	352.0	34	330;374	y	0.09	43	418.5	43	408;429	y	0.14	40	253.0	40	258;248	y	0.13	85	568.0	85	552;584	y	0.028162135435693	-3.01675990694229	down	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
known_NIR_11365	chr2	43494300	43495623	+	43494300	43518965	A3SS	ENSMUST00000028223.9	known	0.01	2	276	2	276	y	0.03	3	117	3	117	y	0.02	5	255	5	255	y	0.02	3	132	3	132	y	0.00	0	281	0	281	n	0.01	2	334	2	334	y	0.00	1	246	1	246	n	0.01	3	384	3	384	y	0.0273393097919095	3	up	ENSMUSG00000026866.17	Kynu	chr2	protein_coding	kynureninase
known_NIR_11377	chr2	48830412	48840130	-	48830412	48839129	5pMXE	ENSMUST00000028098.11	known	0.16	5	27	5	27	y	0.14	2	12	2	12	y	0.24	5	16	5	16	y	0.15	2	11	2	11	y	0.00	0	14	0	14	n	0.07	1	13	1	13	n	0.12	3	22	3	22	y	0.06	1	16	1	16	n	0.0170930961693413	3.27350991424672	up	ENSMUSG00000026761.13	Orc4	chr2	protein_coding	origin recognition complex, subunit 4
known_NIR_11434	chr2	58645434;58649943	58649795;58653687	+	58645434	58653687	cassetteExon	ENSMUST00000071543.12	known	0.01	1.0	113	2;0	113	n	0.00	0.0	10	0;0	10	n	0.01	2.0	235	4;0	235	n	0.00	0.0	11	0;0	11	n	0.03	21.0	636	14;28	636	y	0.03	22.5	825	9;36	825	y	0.03	14.0	511	6;22	511	y	0.03	39.0	1265	11;67	1265	y	0.00323903707654442	-8.66025403784439	down	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11436	chr2	58670160	58680041	+	58670160	58681790	A3SS	ENSMUST00000071543.12	known	0.99	139	1	139	1	n	1.00	8	0	8	0	n	1.00	359	1	359	1	n	1.00	10	0	10	0	n	0.98	1040	22	1040	22	y	0.99	1190	13	1190	13	y	0.99	974	9	974	9	y	0.98	1764	28	1764	28	y	0.0174670498044487	3.2732683535399	up	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11444	chr2	59045158;59119596	59119562;59135410	+	59045158;59096844	59096732;59135410	MXE	ENSMUST00000183625.8	known	0.49	31.5	32.5	6;57	58;7	y	0.54	10.0	8.5	3;17	15;2	y	0.52	31.5	29.0	4;59	51;7	y	0.48	14.5	15.5	3;26	30;1	n	0.58	28.5	21.0	6;51	40;2	y	0.55	46.0	37.0	12;80	70;4	y	0.52	30.0	28.0	6;54	53;3	y	0.57	52.0	39.5	11;93	71;8	y	0.0473735320003166	-2.48768394869031	down	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11453	chr2	59178385;59180966	59180838;59182606	+	59178385	59182606	cassetteExon	ENSMUST00000168631.8	known	0.29	39.5	98	37;42	98	y	0.33	12.5	25	14;11	25	y	0.21	35.0	135	27;43	135	y	0.26	11.5	32	10;13	32	y	0.25	30.0	92	29;31	92	y	0.15	31.0	171	27;35	171	y	0.19	33.5	144	32;35	144	y	0.16	29.5	154	29;30	154	y	0.0463659927586007	2.51106641597839	up	ENSMUSG00000026991.21	Pkp4	chr2	protein_coding	plakophilin 4
known_NIR_11548	chr2	72817976	72818712	+	72817976	72818716	A3SS	ENSMUST00000123087.8	known	0.12	1	7	1	7	n	0.00	0	3	0	3	n	0.11	2	17	2	17	y	0.00	0	5	0	5	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.30	3	7	3	7	y	0.10	1	9	1	9	n	0.039654254724911	-2.67171713582518	down	ENSMUSG00000063714.16	Sp3os	chr2	lncRNA	trans-acting transcription factor 3, opposite strand
known_NIR_11552	chr2	73178103	73178481	-	73174101	73178481	A3SS	ENSMUST00000076463.12	known	0.22	20	69	20	69	y	0.25	36	108	36	108	y	0.32	23	48	23	48	y	0.24	23	74	23	74	y	0.16	11	58	11	58	y	0.13	12	81	12	81	y	0.17	9	45	9	45	y	0.15	15	87	15	87	y	0.0114946026375062	4.49427116254046	up	ENSMUSG00000041762.17	Gpr155	chr2	protein_coding	G protein-coupled receptor 155
known_NIR_11556	chr2	73649492;73653650	73653545;73658816	-	73649492	73658816	cassetteExon	ENSMUST00000124737.8	known	0.93	56.5	4	55;58	4	y	1.00	36.5	0	34;39	0	n	0.90	36.5	4	37;36	4	y	0.95	37.0	2	37;37	2	y	0.84	31.0	6	32;30	6	y	0.87	45.0	7	35;55	7	y	0.89	41.0	5	44;38	5	y	0.85	39.0	7	45;33	7	y	0.0207464759101296	3.47208158796788	up	ENSMUSG00000027104.19	Atf2	chr2	protein_coding	activating transcription factor 2
known_NIR_11574	chr2	76496154;76497786	76497671;76502041	-	76496154	76502041	cassetteExon	ENSMUST00000002809.14	known	0.12	2.5	18	3;2	18	y	0.00	0.0	4	0;0	4	n	0.03	0.5	18	0;1	18	n	0.00	0.0	15	0;0	15	n	0.18	2.0	9	3;1	9	n	0.12	1.0	7	0;2	7	n	0.25	4.0	12	5;3	12	y	0.22	4.0	14	5;3	14	y	0.00817190720165602	-3.88005544898604	down	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
known_NIR_11597	chr2	83555263	83566857	+	83555263	83566854	A3SS	ENSMUST00000125360.8	known	0.40	2	3	2	3	n	0.33	2	4	2	4	n	0.00	0	3	0	3	n	0.50	4	4	4	4	n	1.00	1	0	1	0	n	0.43	3	4	3	4	n	1.00	1	0	1	0	n	1.00	4	0	4	0	n	0.0238936523068215	-3.07319324425497	down	ENSMUSG00000027087.12	Itgav	chr2	protein_coding	integrin alpha V
known_NIR_11673	chr2	91024041	91025378	-	91024041	91025076	A5SS	ENSMUST00000111356.8	known	0.75	143	47	143	47	y	0.70	63	27	63	27	y	0.71	111	45	111	45	y	0.76	72	23	72	23	y	0.77	105	31	105	31	y	0.82	141	31	141	31	y	0.76	102	33	102	33	y	0.79	139	37	139	37	y	0.0324163437976639	-2.77910133951951	down	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
known_NIR_11738	chr2	93826737	93833398	-	93826737;93831858	93831770;93833398	ES	ENSMUST00000111240.8	known	0.04	3	68.5	3	67;70	y	0.03	1	32.5	1	27;38	n	0.03	2	73.0	2	70;76	y	0.03	1	33.0	1	25;41	n	0.04	2	50.0	2	46;54	y	0.08	8	94.0	8	83;105	y	0.06	4	62.5	4	60;65	y	0.06	4	68.0	4	52;84	y	0.0381483790299247	-3.22047024073016	down	ENSMUSG00000040174.15	Alkbh3	chr2	protein_coding	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
known_NIR_11812	chr3	106473500	106478009	+	106473500	106480289	A3SS	ENSMUST00000029507.13	known	0.89	266	33	266	33	y	0.87	80	12	80	12	y	0.88	251	35	251	35	y	0.87	113	17	113	17	y	0.86	134	22	134	22	y	0.81	178	41	178	41	y	0.81	128	30	128	30	y	0.77	140	43	140	43	y	0.0346365154918731	3.41396725435278	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11813	chr3	106479009	106480289	+	106473500	106480289	A5SS	ENSMUST00000029507.13	known	0.90	282	33	282	33	y	0.87	78	12	78	12	y	0.90	315	35	315	35	y	0.86	108	17	108	17	y	0.84	115	22	115	22	y	0.85	226	41	226	41	y	0.84	158	30	158	30	y	0.79	160	43	160	43	y	0.0235197542133014	3.08512327330868	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11837	chr3	108107478	108108076	-	108107478	108107943	A5SS	ENSMUST00000106655.2	known	0.20	1	4	1	4	n	0.40	2	3	2	3	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.83	5	1	5	1	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.67	2	1	2	1	n	0.0233739641680522	-3.07693255638256	down	ENSMUSG00000048796.8	Cyb561d1	chr3	protein_coding	cytochrome b-561 domain containing 1
known_NIR_11868	chr3	115801531	115804271	+	115802186	115804271	5pMXE	ENSMUST00000106502.2	known	0.64	7	4	7	4	y	0.75	9	3	9	3	y	0.85	11	2	11	2	y	0.86	12	2	12	2	y	0.59	10	7	10	7	y	0.36	4	7	4	7	y	0.50	4	4	4	4	n	0.14	1	6	1	6	n	0.0221835330182535	3.41103239957607	up	ENSMUSG00000027963.15	Extl2	chr3	protein_coding	exostosin-like glycosyltransferase 2
known_NIR_11871	chr3	116298095	116300484	-	116298117	116300484	A3SS	ENSMUST00000000348.15	known	0.09	4	40	4	40	y	0.00	0	28	0	28	n	0.10	3	26	3	26	y	0.00	0	30	0	30	n	0.23	5	17	5	17	y	0.24	8	26	8	26	y	0.14	4	24	4	24	y	0.15	4	23	4	23	y	0.00949036021486836	-3.75574812709948	down	ENSMUSG00000000339.15	Rtca	chr3	protein_coding	RNA 3'-terminal phosphate cyclase
known_NIR_11885	chr3	119517835	119519715	-	119517835;119518294	119518261;119519715	ES	ENSMUST00000029780.12	known	0.32	3	6.5	3	8;5	y	0.00	0	1.0	0	0;2	n	0.43	12	16.0	12	17;15	y	0.18	1	4.5	1	4;5	n	0.62	10	6.0	10	6;6	y	0.38	3	5.0	3	5;5	y	0.70	7	3.0	7	4;2	y	0.54	7	6.0	7	5;7	y	0.0324443471537205	-2.8408978751079	down	ENSMUSG00000028134.12	Ptbp2	chr3	protein_coding	polypyrimidine tract binding protein 2
known_NIR_11928	chr3	129805521	129827480	-	129805521;129814291	129814187;129827480	ES	ENSMUST00000001079.15	known	0.68	25	11.5	25	13;10	y	0.51	9	8.5	9	8;9	y	0.35	6	11.0	6	9;13	y	0.44	4	5.0	4	4;6	y	0.77	5	1.5	5	3;0	n	0.65	11	6.0	11	5;7	y	0.74	7	2.5	7	3;2	y	0.77	10	3.0	10	4;2	y	0.0348931612301247	-3.15095110233163	down	ENSMUSG00000001052.16	Sec24b	chr3	protein_coding	Sec24 related gene family, member B (S. cerevisiae)
known_NIR_11945	chr3	134994448	134995316	+	134994100	134995316	A5SS	ENSMUST00000120397.8	known	0.04	1	26	1	26	n	0.00	0	3	0	3	n	0.05	2	37	2	37	y	0.00	0	5	0	5	n	0.09	4	42	4	42	y	0.10	8	70	8	70	y	0.09	5	48	5	48	y	0.10	8	76	8	76	y	0.00986381428916244	-5.3851648071345	down	ENSMUSG00000028167.16	Bdh2	chr3	protein_coding	3-hydroxybutyrate dehydrogenase, type 2
known_NIR_11959	chr3	135144631	135145405	+	135144323	135145405	A5SS	ENSMUST00000196591.5	known	0.78	7	2	7	2	n	0.83	5	1	5	1	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.45	5	6	5	6	y	0.50	3	3	3	3	n	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.0355380523840072	2.87183263447095	up	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11996	chr3	141983762	142009704	-	141988873	142009704	A3SS&ES	ENSMUST00000200650.5	known	1.00	54	0	54	0	n	1.00	13	0	13	0	n	0.97	31	1	31	1	n	1.00	35	0	35	0	n	0.96	26	1	26	1	n	0.98	51	1	51	1	n	0.93	37	3	37	3	y	0.94	29	2	29	2	y	0.0285731188701243	2.98834947055051	up	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12032	chr3	146156385	146159918	+	146156385	146160102	A3SS	ENSMUST00000061937.13	known	0.00	0	66	0	66	n	0.00	0	32	0	32	n	0.00	0	52	0	52	n	0.03	1	32	1	32	n	0.05	2	41	2	41	y	0.02	1	56	1	56	n	0.03	1	35	1	35	n	0.04	2	53	2	53	y	0.0327835930545124	-2.77910133951951	down	ENSMUSG00000028189.13	Ctbs	chr3	protein_coding	chitobiase
known_NIR_12037	chr3	146302988	146315734	+	146302988	146318038	A3SS	ENSMUST00000121133.2	known	0.57	41	31	41	31	y	0.52	15	14	15	14	y	0.43	30	39	30	39	y	0.48	15	16	15	16	y	0.67	44	22	44	22	y	0.59	58	40	58	40	y	0.62	40	25	40	25	y	0.62	87	53	87	53	y	0.0160522780259577	-3.67276580155794	down	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12039	chr3	146302988	146318038	+	146302988;146316243	146315734;146318038	ES	ENSMUST00000147409.2	known	0.02	31	1684.0	31	41;3327	y	0.03	14	400.5	14	15;786	y	0.02	39	1676.5	39	30;3323	y	0.02	16	832.0	16	15;1649	y	0.01	22	1713.5	22	44;3383	y	0.01	40	3181.0	40	58;6304	y	0.01	25	1926.0	25	40;3812	y	0.01	53	3898.0	53	87;7709	y	0.0153924380733023	5	up	ENSMUSG00000028186.15	Uox	chr3	protein_coding	urate oxidase
known_NIR_12093	chr3	154303164	154310529	+	154302921	154310529	A5SS	ENSMUST00000192462.6	known	0.01	1	119	1	119	n	0.06	3	49	3	49	y	0.06	8	127	8	127	y	0.05	3	56	3	56	y	0.01	1	107	1	107	n	0.02	4	168	4	168	y	0.00	0	119	0	119	n	0.00	0	118	0	118	n	0.0438361699248297	2.92306411107734	up	ENSMUSG00000028199.19	Cryz	chr3	protein_coding	crystallin, zeta
known_NIR_12113	chr3	157728996	157732362	-	157728996;157729868	157729760;157732362	ES	ENSMUST00000126716.9	known	0.00	0	7.0	0	5;9	n	0.00	0	3.0	0	1;5	n	0.00	0	6.5	0	3;10	n	0.00	0	3.0	0	3;3	n	0.46	3	3.5	3	3;4	y	0.46	6	7.0	6	6;8	y	0.60	6	4.0	6	1;7	n	0.42	4	5.5	4	0;11	n	0.00116137955585026	-12.2860296297938	down	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12116	chr3	157730398	157732362	-	157728996	157732362	A3SS	ENSMUST00000147304.3	known	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	3	3	3	3	n	0.40	4	6	4	6	y	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00381042421312346	8.18879344153759	up	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12143	chr3	22131118;22157111	22157031;22203106	+	22131118	22203106	cassetteExon	ENSMUST00000202747.4	known	0.12	1.0	7	1;1	7	n	0.04	0.5	12	0;1	12	n	0.23	3.0	10	1;5	10	n	0.14	2.0	12	1;3	12	n	-	-	-	-	-	-	0.33	7.0	14	4;10	14	y	0.23	1.5	5	1;2	5	n	0.38	2.5	4	3;2	4	n	0.0317492182457715	-3.07099387898554	down	ENSMUSG00000027630.14	Tbl1xr1	chr3	protein_coding	transducin (beta)-like 1X-linked receptor 1
known_NIR_12150	chr3	27697238	27765269	-	27697238	27764495	5pMXE	ENSMUST00000046157.10	known	0.62	21	13	21	13	y	0.71	17	7	17	7	y	0.46	6	7	6	7	y	0.68	15	7	15	7	y	0.75	6	2	6	2	n	1.00	5	0	5	0	n	1.00	1	0	1	0	n	1.00	5	0	5	0	n	0.00896455512839546	-3.82132117776981	down	ENSMUSG00000039286.13	Fndc3b	chr3	protein_coding	fibronectin type III domain containing 3B
known_NIR_12155	chr3	28860741	28860819	+	28860741	28860886	A3SS	ENSMUST00000043867.11	known	0.04	37	931	37	931	y	0.02	12	733	12	733	y	0.04	41	1087	41	1087	y	0.01	9	666	9	666	y	0.04	23	540	23	540	y	0.08	53	632	53	632	y	0.07	54	703	54	703	y	0.08	57	659	57	659	y	0.0174216304490538	-3.3123146848433	down	ENSMUSG00000039221.11	Rpl22l1	chr3	protein_coding	ribosomal protein L22 like 1
known_NIR_12162	chr3	32564881	32567150	+	32564738	32567150	A5SS	ENSMUST00000193287.6	known	0.95	21	1	21	1	n	0.92	12	1	12	1	n	1.00	13	0	13	0	n	1.00	16	0	16	0	n	0.81	13	3	13	3	y	0.65	15	8	15	8	y	0.71	5	2	5	2	n	0.83	24	5	24	5	y	0.00840377045527619	4.64813273948195	up	ENSMUSG00000027667.14	Zfp639	chr3	protein_coding	zinc finger protein 639
known_NIR_12168	chr3	32785405	32786707	-	32785405	32787738	A5SS	ENSMUST00000043966.8	known	0.00	0	54	0	54	n	0.00	0	23	0	23	n	0.00	0	46	0	46	n	0.00	0	33	0	33	n	0.02	1	40	1	40	n	0.01	1	72	1	72	n	0.02	1	56	1	56	n	0.03	2	62	2	62	y	0.0162766034594286	-4.89897948556636	down	ENSMUSG00000037531.9	Mrpl47	chr3	protein_coding	mitochondrial ribosomal protein L47
known_NIR_12189	chr3	35975336	35986934	-	35975336	35986342	5pMXE	ENSMUST00000178098.8	known	0.82	70	15	70	15	y	0.93	25	2	25	2	y	0.81	63	15	63	15	y	0.97	37	1	37	1	n	0.71	42	17	42	17	y	0.74	64	23	64	23	y	0.77	46	14	46	14	y	0.70	50	21	50	21	y	0.0244802544026439	3.55557718314801	up	ENSMUSG00000027708.15	Dcun1d1	chr3	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)
known_NIR_12231	chr3	54712888	54714620	-	54712888	54713173	5pMXE	ENSMUST00000182246.2	known	0.95	62	3	62	3	y	0.91	30	3	30	3	y	0.93	37	3	37	3	y	0.92	23	2	23	2	y	1.00	37	0	37	0	n	0.96	49	2	49	2	y	0.95	41	2	41	2	y	0.96	55	2	55	2	y	0.0309763250825572	-2.85835840404199	down	ENSMUSG00000036615.8	Rfxap	chr3	protein_coding	regulatory factor X-associated protein
known_NIR_12324	chr3	83820692	83826758	-	83820695	83826758	A3SS	ENSMUST00000191758.6	known	0.00	0	26	0	26	n	0.00	0	6	0	6	n	0.09	3	31	3	31	y	0.06	1	17	1	17	n	0.07	1	14	1	14	n	0.19	8	35	8	35	y	0.21	7	27	7	27	y	0.22	8	29	8	29	y	0.0215016619655844	-3.26225930398296	down	ENSMUSG00000033767.15	Tmem131l	chr3	protein_coding	transmembrane 131 like
known_NIR_12347	chr3	87826958	87829124	+	87827135	87829124	A5SS	ENSMUST00000119968.8	known	0.22	45	160	45	160	y	0.19	24	105	24	105	y	0.22	42	149	42	149	y	0.21	22	83	22	83	y	0.12	18	138	18	138	y	0.13	31	211	31	211	y	0.10	20	179	20	179	y	0.16	33	175	33	175	y	0.0026645039313473	5.74456264653803	up	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12348	chr3	87826958;87827135	87827110;87829124	+	87826958	87829124	cassetteExon	ENSMUST00000121920.8	known	0.66	89.0	45	18;160	45	y	0.71	58.0	24	11;105	24	y	0.65	78.0	42	7;149	42	y	0.66	43.0	22	3;83	22	y	0.80	71.0	18	4;138	18	y	0.78	113.0	31	15;211	31	y	0.82	93.0	20	7;179	20	y	0.74	93.5	33	12;175	33	y	0.00218782997877075	-5.27656187902292	down	ENSMUSG00000019710.14	Mrpl24	chr3	protein_coding	mitochondrial ribosomal protein L24
known_NIR_12352	chr3	87834181	87834870	-	87834181;87834424	87834362;87834870	ES	ENSMUST00000160648.8	known	0.20	5	20.0	5	17;23	y	0.12	1	7.0	1	6;8	n	0.11	2	17.0	2	17;17	y	0.06	1	14.5	1	12;17	n	0.00	0	20.0	0	20;20	n	0.08	2	22.0	2	19;25	y	0.00	0	15.5	0	13;18	n	0.05	1	20.5	1	21;20	n	0.0476429063089565	2.56706651812425	up	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12353	chr3	87834181	87834870	-	87834424	87834870	A3SS	ENSMUST00000168070.2	known	0.18	5	23	5	23	y	0.11	1	8	1	8	n	0.11	2	17	2	17	y	0.06	1	17	1	17	n	0.00	0	20	0	20	n	0.07	2	25	2	25	y	0.00	0	18	0	18	n	0.05	1	20	1	20	n	0.0347397460284836	2.79478278419107	up	ENSMUSG00000004896.17	Rrnad1	chr3	protein_coding	ribosomal RNA adenine dimethylase domain containing 1
known_NIR_12372	chr3	88301877;88303117	88303021;88303212	-	88301877	88303212	cassetteExon	ENSMUST00000193338.6	known	0.11	5.5	44	5;6	44	y	0.16	3.5	19	5;2	19	y	0.04	2.0	46	4;0	46	n	0.03	0.5	17	0;1	17	n	0.20	6.0	24	4;8	24	y	0.15	9.5	54	10;9	54	y	0.16	7.5	40	9;6	40	y	0.21	6.5	25	9;4	25	y	0.0452609702867676	-2.79130200918403	down	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
known_NIR_12394	chr3	88459824	88460037	-	88459824	88460103	A5SS	ENSMUST00000029698.15	known	0.04	18	492	18	492	y	0.03	7	236	7	236	y	0.03	15	504	15	504	y	0.04	10	253	10	253	y	0.04	15	358	15	358	y	0.07	32	434	32	434	y	0.05	22	399	22	399	y	0.06	23	389	23	389	y	0.0453983125632167	-2.82842712474619	down	ENSMUSG00000028062.16	Lamtor2	chr3	protein_coding	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
known_NIR_12437	chr3	89110393;89110667	89110499;89110779	+	89110393	89110779	cassetteExon	ENSMUST00000077367.11	known	0.10	10.0	86	9;11	86	y	0.02	1.5	60	1;2	60	n	0.06	3.0	51	2;4	51	y	0.06	4.0	58	3;5	58	y	0.09	3.0	32	5;1	32	n	0.14	9.5	59	11;8	59	y	0.14	8.5	53	10;7	53	y	0.10	5.0	43	4;6	43	y	0.0351968080458463	-2.74250378563422	down	ENSMUSG00000028048.12	Gba	chr3	protein_coding	glucosidase, beta, acid
known_NIR_12455	chr3	89318687	89318868	-	89318687	89319053	A5SS	ENSMUST00000107426.8	known	0.51	19	18	19	18	y	0.52	14	13	14	13	y	0.55	26	21	26	21	y	0.56	20	16	20	16	y	0.61	23	15	23	15	y	0.69	31	14	31	14	y	0.57	17	13	17	13	y	0.61	20	13	20	13	y	0.0347045572540631	-3.05329013445517	down	ENSMUSG00000042642.14	Flad1	chr3	protein_coding	flavin adenine dinucleotide synthetase 1
known_NIR_12478	chr3	89905310	89905632	-	89905310	89905835	A5SS	ENSMUST00000079724.9	known	0.11	36	300	36	300	y	0.09	20	198	20	198	y	0.08	24	292	24	292	y	0.10	18	159	18	159	y	0.06	12	196	12	196	y	0.07	21	280	21	280	y	0.05	14	241	14	241	y	0.05	14	290	14	290	y	0.00424735534597244	4.66628262628691	up	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
known_NIR_12536	chr3	90448624	90449301	+	90444724	90449301	A5SS	ENSMUST00000098911.10	known	0.23	19	63	19	63	y	0.31	9	20	9	20	y	0.12	10	76	10	76	y	0.25	7	21	7	21	y	0.00	0	38	0	38	n	0.04	3	64	3	64	y	0.06	4	64	4	64	y	0.15	12	69	12	69	y	0.0187059161856175	3.24895907277128	up	ENSMUSG00000074457.11	S100a16	chr3	protein_coding	S100 calcium binding protein A16
known_NIR_12541	chr3	90602601	90602975	-	90602604	90602975	A3SS	ENSMUST00000069960.12	known	0.28	27	70	27	70	y	0.25	16	47	16	47	y	0.16	14	73	14	73	y	0.19	7	29	7	29	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.18	3	14	3	14	y	0.0212529976136694	3.32205298513375	up	ENSMUSG00000056071.13	S100a9	chr3	protein_coding	S100 calcium binding protein A9 (calgranulin B)
known_NIR_12595	chr3	95226264	95227373	+	95222656	95227373	A5SS	ENSMUST00000015858.12	known	0.35	215	406	215	406	y	0.20	55	227	55	227	y	0.32	166	353	166	353	y	0.27	84	229	84	229	y	0.47	213	241	213	241	y	0.42	268	365	268	365	y	0.46	238	277	238	277	y	0.43	236	314	236	314	y	0.0115831250961072	-4.58705743264797	down	ENSMUSG00000015714.12	Cers2	chr3	protein_coding	ceramide synthase 2
known_NIR_12678	chr4	102972020	102972757	+	102971716	102972757	A5SS	ENSMUST00000136092.2	known	0.00	0	7	0	7	n	0.00	0	3	0	3	n	0.14	1	6	1	6	n	-	-	-	-	-	-	0.33	2	4	2	4	n	0.21	3	11	3	11	y	0.25	1	3	1	3	n	0.25	3	9	3	9	y	0.025088218899724	-4.02364552615636	down	ENSMUSG00000028522.17	Mier1	chr4	protein_coding	MEIR1 treanscription regulator
known_NIR_12702	chr4	107151145	107163979	-	107151145	107154794	A5SS&ES	ENSMUST00000134366.8	known	0.01	4	368	4	368	y	0.02	5	229	5	229	y	0.02	7	313	7	313	y	0.02	3	188	3	188	y	0.01	4	282	4	282	y	0.01	2	335	2	335	y	0.00	1	245	1	245	n	0.00	0	105	0	105	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12703	chr4	107151145	107163979	-	107151145;107154937	107154794;107163979	ES	ENSMUST00000082426.11	known	0.01	4	408.5	4	368;449	y	0.02	5	262.5	5	229;296	y	0.02	7	348.0	7	313;383	y	0.01	3	216.0	3	188;244	y	0.01	4	316.5	4	282;351	y	0.00	2	438.5	2	335;542	y	0.00	1	316.5	1	245;388	n	0.00	0	114.5	0	105;124	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000034785.16	Dio1	chr4	protein_coding	deiodinase, iodothyronine, type I
known_NIR_12741	chr4	108687780	108688903	-	108687780	108689610	A5SS	ENSMUST00000102740.8	known	0.33	3	6	3	6	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.64	7	4	7	4	y	0.50	3	3	3	3	n	0.00814268557971833	-3.91068482467373	down	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12746	chr4	108687780;108689648	108689610;108690705	-	108687780	108690705	cassetteExon	ENSMUST00000102742.11	known	0.04	6.0	139	6;6	139	y	0.05	4.5	88	4;5	88	y	0.05	6.5	121	6;7	121	y	0.03	3.0	88	3;3	88	y	0.01	1.0	122	1;1	122	n	0.03	3.5	122	3;4	122	y	0.03	4.0	132	4;4	132	y	0.01	1.5	136	3;0	136	n	0.0250214565852385	3	up	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12753	chr4	108944682	108955700	-	108930346	108955700	A3SS	ENSMUST00000126288.8	known	0.92	48	4	48	4	y	0.96	27	1	27	1	n	0.97	33	1	33	1	n	1.00	36	0	36	0	n	0.91	29	3	29	3	y	0.88	38	5	38	5	y	0.83	19	4	19	4	y	0.85	40	7	40	7	y	0.00760956788858733	3.94749715806733	up	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12755	chr4	108948896	108955700	-	108930346	108955700	A3SS	ENSMUST00000126288.8	known	0.99	359	4	359	4	y	0.99	100	1	100	1	n	1.00	290	1	290	1	n	1.00	131	0	131	0	n	0.99	214	3	214	3	y	0.99	359	5	359	5	y	0.98	195	4	195	4	y	0.98	310	7	310	7	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12758	chr4	108959789	108990941	-	108959789	108975092	5pMXE	ENSMUST00000084366.13	known	0.12	25	192	25	192	y	0.10	8	73	8	73	y	0.18	29	136	29	136	y	0.16	19	102	19	102	y	0.19	25	109	25	109	y	0.23	44	146	44	146	y	0.31	39	88	39	88	y	0.22	40	143	40	143	y	0.0241307499724246	-3.0994057155322	down	ENSMUSG00000028559.18	Osbpl9	chr4	protein_coding	oxysterol binding protein-like 9
known_NIR_12786	chr4	115431961	115432104	+	115431961	115432087	A3SS	ENSMUST00000030486.15	known	0.93	79	6	79	6	y	0.88	15	2	15	2	y	0.96	120	5	120	5	y	0.75	12	4	12	4	y	0.75	6	2	6	2	n	0.78	21	6	21	6	y	0.68	13	6	13	6	y	0.71	5	2	5	2	n	0.0396507174435911	2.92306411107734	up	ENSMUSG00000028712.13	Cyp4a31	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 31
known_NIR_12789	chr4	115484137	115485866	-	115484137	115485533	A5SS&ES	ENSMUST00000135569.8	known	0.98	40	1	40	1	n	1.00	16	0	16	0	n	0.97	31	1	31	1	n	1.00	10	0	10	0	n	0.95	18	1	18	1	n	0.90	18	2	18	2	y	0.92	23	2	23	2	y	0.86	25	4	25	4	y	0.0176110650393355	3.93892771133865	up	ENSMUSG00000028713.18	Cyp4b1	chr4	protein_coding	cytochrome P450, family 4, subfamily b, polypeptide 1
known_NIR_12837	chr4	117142708	117143048	-	117142708	117143126	A5SS	ENSMUST00000030439.15	known	0.74	39	14	39	14	y	0.69	36	16	36	16	y	0.71	48	20	48	20	y	0.76	32	10	32	10	y	0.54	21	18	21	18	y	0.59	35	24	35	24	y	0.64	37	21	37	21	y	0.66	29	15	29	15	y	0.0138358603906526	3.78327568992854	up	ENSMUSG00000028677.20	Rnf220	chr4	protein_coding	ring finger protein 220
known_NIR_12863	chr4	118384534	118386396	+	118384441	118386396	A5SS	ENSMUST00000106367.8	known	0.38	11	18	11	18	y	0.44	4	5	4	5	n	0.51	21	20	21	20	y	0.56	10	8	10	8	y	0.57	23	17	23	17	y	0.69	31	14	31	14	y	0.71	22	9	22	9	y	0.55	17	14	17	14	y	0.0322776820166173	-2.77431659678298	down	ENSMUSG00000028536.13	2610528J11Rik	chr4	protein_coding	RIKEN cDNA 2610528J11 gene
known_NIR_12876	chr4	119136408	119138767	-	119136396	119138767	A3SS	ENSMUST00000079644.13	known	0.03	31	870	31	870	y	0.04	21	453	21	453	y	0.04	34	925	34	925	y	0.04	20	435	20	435	y	0.03	21	631	21	631	y	0.02	27	1061	27	1061	y	0.03	28	797	28	797	y	0.02	19	886	19	886	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000028639.15	Ybx1	chr4	protein_coding	Y box protein 1
known_NIR_12883	chr4	119209849	119210267	-	119207071	119210267	A3SS	ENSMUST00000238759.2	known	0.44	4	5	4	5	n	0.50	2	2	2	2	n	0.62	8	5	8	5	y	0.57	4	3	4	3	n	0.73	8	3	8	3	y	0.75	18	6	18	6	y	0.82	14	3	14	3	y	0.57	12	9	12	9	y	0.0336034923097899	-2.80630710004965	down	ENSMUSG00000028637.17	Ccdc30	chr4	protein_coding	coiled-coil domain containing 30
known_NIR_12921	chr4	123814234	123814744	+	123813845	123814744	A5SS	ENSMUST00000030399.7	known	0.02	2	111	2	111	y	0.00	0	48	0	48	n	0.00	0	97	0	97	n	0.00	0	68	0	68	n	0.03	2	73	2	73	y	0.02	2	124	2	124	y	0.03	2	70	2	70	y	0.01	1	116	1	116	n	0.0448673860955738	-2.52810291480115	down	ENSMUSG00000028646.17	Rragc	chr4	protein_coding	Ras-related GTP binding C
known_NIR_12978	chr4	128684106	128699805	-	128684106;128688769	128688644;128699805	ES	ENSMUST00000106072.9	known	0.18	1	4.5	1	5;4	n	0.33	2	4.0	2	5;3	y	0.25	2	6.0	2	10;2	y	0.14	1	6.0	1	9;3	n	0.18	1	4.5	1	3;6	n	0.00	0	5.5	0	9;2	n	0.00	0	4.5	0	7;2	n	0.00	0	2.5	0	5;0	n	0.0263623774546811	2.93287741160527	up	ENSMUSG00000028799.16	Zfp362	chr4	protein_coding	zinc finger protein 362
known_NIR_12996	chr4	129494927	129495663	+	129495326	129495663	A5SS&ES	ENSMUST00000129515.8	known	0.43	15	20	15	20	y	0.40	6	9	6	9	y	0.46	19	22	19	22	y	0.48	10	11	10	11	y	0.64	23	13	23	13	y	0.54	22	19	22	19	y	0.70	19	8	19	8	y	0.52	22	20	22	20	y	0.0265738805698025	-3.43182867742791	down	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13008	chr4	129494927;129495326	129495200;129495663	+	129494927	129495663	cassetteExon	ENSMUST00000150110.8	known	0.55	18.5	15	17;20	15	y	0.52	6.5	6	4;9	6	y	0.51	19.5	19	17;22	19	y	0.44	8.0	10	5;11	10	y	0.26	8.0	23	3;13	23	y	0.41	15.5	22	12;19	22	y	0.32	9.0	19	10;8	19	y	0.38	13.5	22	7;20	22	y	0.00890277937370349	4.00300140239297	up	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13011	chr4	129494927;129495418	129495200;129495663	+	129494927	129495663	cassetteExon	ENSMUST00000150110.8	known	0.39	9.5	15	17;2	15	y	0.37	3.5	6	4;3	6	y	0.37	11.0	19	17;5	19	y	0.35	5.5	10	5;6	10	y	0.16	4.5	23	3;6	23	y	0.25	7.5	22	12;3	22	y	0.24	6.0	19	10;2	19	y	0.15	4.0	22	7;1	22	n	0.00491010196509272	6.20752231839188	up	ENSMUSG00000028797.21	Tmem234	chr4	protein_coding	transmembrane protein 234
known_NIR_13040	chr4	129512155	129512285	-	129511709	129512285	A3SS	ENSMUST00000046675.12	known	0.33	14	29	14	29	y	0.17	2	10	2	10	y	0.36	9	16	9	16	y	0.23	3	10	3	10	y	0.58	11	8	11	8	y	0.49	20	21	20	21	y	0.38	8	13	8	13	y	0.41	12	17	12	17	y	0.0221282915594647	-3.06370358934694	down	ENSMUSG00000040795.13	Iqcc	chr4	protein_coding	IQ motif containing C
known_NIR_13069	chr4	131663178;131664775	131664326;131684954	-	131663178	131684954	cassetteExon	ENSMUST00000146443.8	known	0.85	149.0	26	166;132	26	y	0.86	121.5	20	152;91	20	y	0.86	134.5	22	153;116	22	y	0.85	100.5	18	118;83	18	y	0.90	77.5	9	90;65	9	y	0.94	131.0	8	131;131	8	y	0.90	91.5	10	100;83	10	y	0.91	139.0	14	180;98	14	y	0.00624708602101342	-5.81084825535899	down	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13074	chr4	131691498	131695099	-	131685130	131695099	A3SS	ENSMUST00000135579.8	known	0.09	7	74	7	74	y	0.09	8	80	8	80	y	0.06	3	45	3	45	y	0.10	6	56	6	56	y	0.07	2	28	2	28	y	0.05	3	63	3	63	y	0.06	3	47	3	47	y	0.05	3	54	3	54	y	0.0419030225531745	2.77910133951951	up	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
known_NIR_13094	chr4	132065549	132067236	-	132066552	132067236	3pMXE	ENSMUST00000131307.8	known	0.91	10	1	10	1	n	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.67	2	1	2	1	n	0.57	8	6	8	6	y	0.67	4	2	4	2	n	0.58	7	5	7	5	y	0.75	3	1	3	1	n	0.0383364972700005	2.81971804229295	up	ENSMUSG00000028896.14	Rcc1	chr4	protein_coding	regulator of chromosome condensation 1
known_NIR_13109	chr4	132400343	132417016	+	132400343;132408204	132408067;132417016	ES	ENSMUST00000135299.8	known	0.94	25	1.5	25	1;2	n	0.91	15	1.5	15	2;1	n	0.91	21	2.0	21	2;2	y	0.91	24	2.5	24	4;1	n	0.94	16	1.0	16	0;2	n	1.00	27	0.0	27	0;0	n	1.00	19	0.0	19	0;0	n	0.94	23	1.5	23	0;3	n	0.0485566704091129	-2.78151794983659	down	ENSMUSG00000028886.16	Eya3	chr4	protein_coding	EYA transcriptional coactivator and phosphatase 3
known_NIR_13121	chr4	132997120;132998125	132997981;132998274	-	132997120	132998274	cassetteExon	ENSMUST00000105907.9	known	0.04	2.5	61	5;0	61	n	0.02	0.5	30	1;0	30	n	0.03	2.0	76	0;4	76	n	0.07	3.0	41	4;2	41	y	0.08	4.0	45	2;6	45	y	0.07	6.5	85	5;8	85	y	0.10	6.0	56	6;6	56	y	0.07	5.5	78	3;8	78	y	0.0257177704619378	-3.09838667696593	down	ENSMUSG00000028857.17	Tmem222	chr4	protein_coding	transmembrane protein 222
known_NIR_13165	chr4	134652743	134654046	+	134653461	134654046	5pMXE	ENSMUST00000149003.2	known	0.93	337	27	337	27	y	0.91	81	8	81	8	y	0.96	389	15	389	15	y	0.93	184	14	184	14	y	0.96	267	11	267	11	y	0.98	961	15	961	15	y	0.95	198	11	198	11	y	0.97	606	17	606	17	y	0.0438809207452044	-2.67223596832737	down	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13169	chr4	134653132	134654046	+	134653461	134654046	A5SS	ENSMUST00000149003.2	known	0.16	5	27	5	27	y	0.00	0	8	0	8	n	0.29	6	15	6	15	y	0.12	2	14	2	14	y	0.39	7	11	7	11	y	0.29	6	15	6	15	y	0.45	9	11	9	11	y	0.39	11	17	11	17	y	0.0197258259892777	-3.4743182359474	down	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13170	chr4	134653132;134653461	134653337;134654046	+	134653132	134654046	cassetteExon	ENSMUST00000154837.8	known	0.77	17.0	5	7;27	5	y	1.00	4.0	0	0;8	0	n	0.61	9.5	6	4;15	6	y	0.82	9.0	2	4;14	2	y	0.48	6.5	7	2;11	7	y	0.60	9.0	6	3;15	6	y	0.53	10.0	9	9;11	9	y	0.53	12.5	11	8;17	11	y	0.0403735240726398	3.15424041341116	up	ENSMUSG00000037266.19	Rsrp1	chr4	protein_coding	arginine/serine rich protein 1
known_NIR_13279	chr4	140970321	140972129	+	140968055	140972129	A5SS	ENSMUST00000141834.9	known	0.04	3	71	3	71	y	0.05	1	19	1	19	n	0.04	2	46	2	46	y	0.04	1	25	1	25	n	0.04	2	43	2	43	y	0.00	0	63	0	63	n	0.00	0	48	0	48	n	0.00	0	46	0	46	n	0.0435463480809013	3.15296312547233	up	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
known_NIR_13322	chr4	148234123	148236399	-	148234123	148235545	5pMXE	ENSMUST00000105706.8	known	0.54	7	6	7	6	y	0.50	10	10	10	10	y	0.61	11	7	11	7	y	0.57	8	6	8	6	y	0.75	6	2	6	2	n	0.83	10	2	10	2	y	0.58	7	5	7	5	y	0.82	9	2	9	2	y	0.0387299969035054	-3.04895676241166	down	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13331	chr4	148657486	148657568	+	148657426	148657568	A5SS	ENSMUST00000017408.14	known	0.21	9	33	9	33	y	0.20	3	12	3	12	y	0.15	5	28	5	28	y	0.11	2	16	2	16	y	0.00	0	30	0	30	n	0.09	4	42	4	42	y	0.07	2	28	2	28	y	0.09	3	32	3	32	y	0.0160246800975054	3.32733071802503	up	ENSMUSG00000017264.17	Exosc10	chr4	protein_coding	exosome component 10
known_NIR_13393	chr4	152383230;152383702	152383594;152384128	+	152383230	152384128	cassetteExon	ENSMUST00000048892.14	known	0.24	9.5	30	7;12	30	y	0.27	6.5	18	7;6	18	y	0.22	8.5	31	6;11	31	y	0.17	6.0	29	5;7	29	y	0.09	2.0	20	2;2	20	y	0.06	3.5	51	3;4	51	y	0.10	3.5	32	3;4	32	y	0.07	3.0	43	2;4	43	y	0.00295131559373545	6.32831881684378	up	ENSMUSG00000039662.17	Icmt	chr4	protein_coding	isoprenylcysteine carboxyl methyltransferase
known_NIR_13406	chr4	154108274;154108807	154108524;154109961	-	154108274	154109961	cassetteExon	ENSMUST00000125533.9	known	0.08	1.0	12	0;2	12	n	0.14	0.5	3	1;0	3	n	0.06	1.0	15	0;2	15	n	0.14	0.5	3	0;1	3	n	0.33	2.5	5	1;4	5	n	0.12	2.0	15	4;0	15	n	0.38	5.0	8	3;7	8	y	0.33	1.5	3	3;0	3	n	0.0429406366756201	-3.01101729745329	down	ENSMUSG00000078350.12	Smim1	chr4	protein_coding	small integral membrane protein 1
known_NIR_13419	chr4	155167211	155170662	-	155167211;155167774	155167566;155170662	ES	ENSMUST00000149796.2	known	0.77	344	105.0	344	136;74	y	0.77	176	51.5	176	66;37	y	0.78	292	83.0	292	115;51	y	0.79	186	49.0	186	56;42	y	0.81	197	47.0	197	51;43	y	0.83	332	67.0	332	87;47	y	0.85	268	48.5	268	57;40	y	0.83	255	54.0	255	58;50	y	0.002888615659502	-5.54684070985142	down	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
known_NIR_13420	chr4	155167211;155167693	155167566;155170662	-	155167211	155170662	cassetteExon	ENSMUST00000030914.4	known	0.19	82.0	344	136;28	344	y	0.20	44.0	176	66;22	176	y	0.18	62.0	292	115;9	292	y	0.14	30.5	186	56;5	186	y	0.13	30.5	197	51;10	197	y	0.14	53.0	332	87;19	332	y	0.11	32.5	268	57;8	268	y	0.12	33.5	255	58;9	255	y	0.0199063198081445	3.58394478112802	up	ENSMUSG00000029048.4	Rer1	chr4	protein_coding	retention in endoplasmic reticulum sorting receptor 1
known_NIR_13531	chr4	3939131	3939424	+	3938962	3939424	A5SS	ENSMUST00000149544.8	known	0.84	27	5	27	5	y	0.79	15	4	15	4	y	0.66	29	15	29	15	y	0.80	12	3	12	3	y	0.45	10	12	10	12	y	0.66	19	10	19	10	y	0.67	18	9	18	9	y	0.60	12	8	12	8	y	0.0345493433369797	2.77278883174319	up	ENSMUSG00000042198.13	Chchd7	chr4	protein_coding	coiled-coil-helix-coiled-coil-helix domain containing 7
known_NIR_13566	chr4	41740976	41745002	-	41740976	41741102	5pMXE	ENSMUST00000059354.15	known	0.04	16	437	16	437	y	0.10	17	151	17	151	y	0.06	20	318	20	318	y	0.05	10	184	10	184	y	0.02	4	237	4	237	y	0.03	11	307	11	307	y	0.01	4	306	4	306	y	0.01	3	265	3	265	y	0.0351199937933983	3.21565320454723	up	ENSMUSG00000036078.17	Sigmar1	chr4	protein_coding	sigma non-opioid intracellular receptor 1
known_NIR_13607	chr4	43570906	43571189	-	43570911	43571189	A3SS	ENSMUST00000128403.8	known	0.00	0	23	0	23	n	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	1	0	1	n	0.11	2	16	2	16	y	0.12	3	21	3	21	y	0.13	2	13	2	13	y	0.11	2	16	2	16	y	0.000148250183677307	-24.5449494897534	down	ENSMUSG00000028467.16	Gba2	chr4	protein_coding	glucosidase beta 2
known_NIR_13637	chr4	45105644;45106888	45106615;45107913	-	45105644	45107913	cassetteExon	ENSMUST00000107810.3	known	0.03	5.0	146	0;10	146	n	0.02	1.0	60	0;2	60	n	0.03	4.0	149	0;8	149	n	0.03	1.5	52	0;3	52	n	0.03	2.5	92	0;5	92	n	0.05	8.0	158	2;14	158	y	0.05	7.5	158	0;15	158	n	0.05	6.0	124	0;12	124	n	0.0307597787889487	-3.1304951684997	down	ENSMUSG00000078713.9	Tomm5	chr4	protein_coding	translocase of outer mitochondrial membrane 5
known_NIR_13707	chr4	59517755	59524404	-	59517755	59524395	A5SS	ENSMUST00000030076.12	known	0.08	4	44	4	44	y	0.11	3	24	3	24	y	0.15	4	22	4	22	y	0.00	0	20	0	20	n	0.12	3	21	3	21	y	0.19	10	43	10	43	y	0.29	4	10	4	10	y	0.21	8	30	8	30	y	0.047687337579636	-2.48750378291733	down	ENSMUSG00000028382.16	Ptbp3	chr4	protein_coding	polypyrimidine tract binding protein 3
known_NIR_13711	chr4	59775549	59783728	-	59782334	59783728	3pMXE	ENSMUST00000138097.2	known	0.50	8	8	8	8	y	0.50	1	1	1	1	n	0.67	6	3	6	3	n	1.00	3	0	3	0	n	0.60	3	2	3	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.0453641019919868	2.53950165714175	up	ENSMUSG00000038544.15	Inip	chr4	protein_coding	INTS3 and NABP interacting protein
known_NIR_13714	chr4	60139352	60140650	-	60139352	60139691	5pMXE	ENSMUST00000074700.9	known	0.00	5	2638	5	2638	y	0.00	0	1412	0	1412	n	0.00	5	1991	5	1991	y	0.00	1	918	1	918	n	0.03	70	2686	70	2686	y	0.03	56	1761	56	1761	y	0.02	70	2754	70	2754	y	0.06	29	421	29	421	y	0.0272618544093613	-4.04145188432738	down	ENSMUSG00000078688.12	Mup2	chr4	protein_coding	major urinary protein 2
known_NIR_13733	chr4	62618131	62618235	+	62615569	62618235	A5SS	ENSMUST00000084521.11	known	0.88	7	1	7	1	n	1.00	3	0	3	0	n	0.89	16	2	16	2	y	1.00	6	0	6	0	n	0.55	6	5	6	5	y	0.85	17	3	17	3	y	0.58	7	5	7	5	y	0.80	16	4	16	4	y	0.0392411247365891	2.98360643466062	up	ENSMUSG00000059810.19	Rgs3	chr4	protein_coding	regulator of G-protein signaling 3
known_NIR_13820	chr4	9576973	9583812	-	9542310	9583812	A3SS	ENSMUST00000078139.13	known	0.68	76	36	76	36	y	0.54	32	27	32	27	y	0.70	43	18	43	18	y	0.58	41	30	41	30	y	0.78	39	11	39	11	y	0.72	55	21	55	21	y	0.78	31	9	31	9	y	0.74	42	15	42	15	y	0.0363564566267671	-3.13762014816561	down	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13862	chr5	100185840	100186433	-	100185840	100186579	A5SS	ENSMUST00000128187.8	known	0.04	5	116	5	116	y	0.04	2	43	2	43	y	0.03	3	103	3	103	y	0.05	3	59	3	59	y	0.00	0	79	0	79	n	0.03	4	111	4	111	y	0.02	2	92	2	92	y	0.00	0	138	0	138	n	0.0261377052147607	3.22047024073016	up	ENSMUSG00000029328.16	Hnrnpdl	chr5	protein_coding	heterogeneous nuclear ribonucleoprotein D-like
known_NIR_13892	chr5	104195012	104198444	+	104194704	104198444	A5SS	ENSMUST00000128511.8	known	0.90	72	8	72	8	y	0.86	32	5	32	5	y	0.81	64	15	64	15	y	0.85	28	5	28	5	y	0.66	35	18	35	18	y	0.81	69	16	69	16	y	0.70	51	22	51	22	y	0.73	59	22	59	22	y	0.0176197874256238	3.53815185068681	up	ENSMUSG00000029310.14	Nudt9	chr5	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 9
known_NIR_13935	chr5	108724545	108728773	-	108724545	108724694	5pMXE	ENSMUST00000199010.2	known	0.95	121	6	121	6	y	0.96	49	2	49	2	y	0.92	108	9	108	9	y	0.97	64	2	64	2	y	0.90	57	6	57	6	y	0.88	98	13	98	13	y	0.90	88	10	88	10	y	0.91	80	8	80	8	y	0.0091706174211512	4.2	up	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13937	chr5	108724545;108725115	108724694;108728773	-	108724545	108728773	cassetteExon	ENSMUST00000156110.8	known	0.05	7.0	121	6;8	121	y	0.05	2.5	49	2;3	49	y	0.09	10.5	108	9;12	108	y	0.07	5.0	64	2;8	64	y	0.09	5.5	57	6;5	57	y	0.11	11.5	98	13;10	98	y	0.09	8.5	88	10;7	88	y	0.10	8.5	80	8;9	80	y	0.0339390678350573	-3.03614588222994	down	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13987	chr5	110938820	110938918	-	110938802	110938918	A3SS	ENSMUST00000031490.11	known	0.23	27	88	27	88	y	0.16	9	46	9	46	y	0.27	24	66	24	66	y	0.15	7	40	7	40	y	0.37	21	36	21	36	y	0.31	39	86	39	86	y	0.22	15	54	15	54	y	0.33	30	60	30	60	y	0.0498529898494638	-2.4550631054896	down	ENSMUSG00000029512.12	Ulk1	chr5	protein_coding	unc-51 like kinase 1
known_NIR_14033	chr5	114935975	114936579	+	114935975	114936582	A3SS	ENSMUST00000102578.11	known	0.17	8	39	8	39	y	0.23	7	23	7	23	y	0.21	9	34	9	34	y	0.12	5	35	5	35	y	0.07	2	25	2	25	y	0.08	3	34	3	34	y	0.09	3	31	3	31	y	0.11	3	25	3	25	y	0.023728042685692	3.6908862769576	up	ENSMUSG00000041870.18	Ankrd13a	chr5	protein_coding	ankyrin repeat domain 13a
known_NIR_14038	chr5	115123353	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	known	1.00	4	0	4	0	n	-	-	-	-	-	-	1.00	9	0	9	0	n	1.00	3	0	3	0	n	0.86	12	2	12	2	y	0.78	7	2	7	2	n	0.82	9	2	9	2	y	0.60	6	4	6	4	y	0.0263179649931134	4.09599990110759	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
known_NIR_14069	chr5	119812358;119813367	119813308;119813623	+	119812358	119813623	cassetteExon	ENSMUST00000079719.11	known	0.10	4.5	40	8;1	40	n	0.00	0.0	17	0;0	17	n	0.09	2.5	24	2;3	24	y	0.04	0.5	12	1;0	12	n	0.22	5.5	20	6;5	20	y	0.13	9.5	62	10;9	62	y	0.20	2.5	10	2;3	10	y	0.09	1.5	16	0;3	16	n	0.0386449802800007	-2.68599930652972	down	ENSMUSG00000018604.19	Tbx3	chr5	protein_coding	T-box 3
known_NIR_14073	chr5	120667728	120668381	+	120667728	120670925	A3SS	ENSMUST00000076051.12	known	0.77	139	42	139	42	y	0.78	58	16	58	16	y	0.78	119	34	119	34	y	0.75	63	21	63	21	y	0.75	82	27	82	27	y	0.66	73	37	73	37	y	0.70	95	41	95	41	y	0.71	127	51	127	51	y	0.0320185255941388	3.28439249215943	up	ENSMUSG00000032754.15	Slc8b1	chr5	protein_coding	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
known_NIR_14100	chr5	121672493	121675175	-	121672493;121674006	121673917;121675175	ES	ENSMUST00000031410.14	known	0.06	5	73.0	5	73;73	y	0.00	0	38.0	0	33;43	n	0.05	4	73.0	4	71;75	y	0.04	2	46.0	2	44;48	y	0.07	4	54.0	4	63;45	y	0.09	8	81.0	8	77;85	y	0.06	4	58.0	4	59;57	y	0.11	8	66.0	8	67;65	y	0.0408400507813905	-2.61630854880215	down	ENSMUSG00000029454.16	Mapkapk5	chr5	protein_coding	MAP kinase-activated protein kinase 5
known_NIR_14155	chr5	122938656	122940193	-	122938695	122940193	A3SS	ENSMUST00000086216.9	known	0.38	73	117	73	117	y	0.39	39	60	39	60	y	0.41	81	116	81	116	y	0.45	46	57	46	57	y	0.52	44	41	44	41	y	0.45	81	98	81	98	y	0.43	65	87	65	87	y	0.48	84	91	84	91	y	0.0483599448032983	-2.50417711235317	down	ENSMUSG00000029472.14	Anapc5	chr5	protein_coding	anaphase-promoting complex subunit 5
known_NIR_14232	chr5	125096054	125097024	-	125096054	125096883	A5SS	ENSMUST00000125053.8	known	0.57	24	18	24	18	y	0.74	17	6	17	6	y	0.44	21	27	21	27	y	0.58	11	8	11	8	y	0.41	17	24	17	24	y	0.32	18	39	18	39	y	0.48	23	25	23	25	y	0.34	15	29	15	29	y	0.0423306823676922	2.73166226697249	up	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14233	chr5	125096054	125099935	-	125096054;125097110	125096883;125099935	ES	ENSMUST00000125053.8	known	0.32	20	42.0	20	18;66	y	0.37	7	12.0	7	6;18	y	0.23	11	37.0	11	27;47	y	0.27	7	18.5	7	8;29	y	0.26	14	40.0	14	24;56	y	0.17	12	57.5	12	39;76	y	0.16	8	42.5	8	25;60	y	0.18	9	41.0	9	29;53	y	0.0354219674519856	2.76140548100918	up	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14239	chr5	125119031	125119809	-	125119028	125119809	A3SS	ENSMUST00000125053.8	known	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.09	1	10	1	10	n	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.29	2	5	2	5	n	0.25	4	12	4	12	y	0.0424460941371839	-2.90361287742279	down	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14249	chr5	125528836;125529309	125529212;125531390	+	125528836	125531390	cassetteExon	ENSMUST00000049040.14	known	0.04	4.0	108	3;5	108	y	0.04	2.0	52	1;3	52	n	0.03	3.0	100	3;3	100	y	0.03	2.0	66	2;2	66	y	0.06	4.5	76	2;7	76	y	0.05	5.5	115	5;6	115	y	0.06	5.5	91	6;5	91	y	0.05	4.5	82	3;6	82	y	0.0027136820350938	-4.89897948556636	down	ENSMUSG00000037905.14	Bri3bp	chr5	protein_coding	Bri3 binding protein
known_NIR_14261	chr5	129631772;129636685	129636533;129637744	+	129631772	129637744	cassetteExon	ENSMUST00000053737.9	known	0.14	6.5	39	8;5	39	y	0.14	3.5	22	5;2	22	y	0.14	6.0	37	6;6	37	y	0.11	3.5	29	3;4	29	y	0.02	0.5	21	1;0	21	n	0.10	4.5	41	3;6	41	y	0.08	3.5	39	0;7	39	n	0.00	0.0	25	0;0	25	n	0.0349781900828906	3.30551378830618	up	ENSMUSG00000029439.15	Sfswap	chr5	protein_coding	splicing factor SWAP
known_NIR_14286	chr5	129971206	130010982	+	129971206;130007469	130007360;130010982	ES	ENSMUST00000051758.11	known	0.02	2	86.5	2	81;92	y	0.05	3	54.0	3	53;55	y	0.03	2	63.5	2	57;70	y	0.05	3	55.0	3	60;50	y	0.00	0	34.0	0	34;34	n	0.01	1	70.5	1	63;78	n	0.00	0	38.5	0	33;44	n	0.02	1	54.0	1	50;58	n	0.0192769674941264	3.3717089216941	up	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14287	chr5	129971206	130010982	+	130007469	130010982	A5SS&ES	ENSMUST00000073945.6	known	0.02	2	92	2	92	y	0.05	3	55	3	55	y	0.03	2	70	2	70	y	0.06	3	50	3	50	y	0.00	0	34	0	34	n	0.01	1	78	1	78	n	0.00	0	44	0	44	n	0.02	1	58	1	58	n	0.0289410313896387	3.15296312547233	up	ENSMUSG00000066735.9	Vkorc1l1	chr5	protein_coding	vitamin K epoxide reductase complex, subunit 1-like 1
known_NIR_14302	chr5	130282850	130284051	-	130282909	130284051	A3SS	ENSMUST00000026387.11	known	0.00	0	135	0	135	n	0.00	0	70	0	70	n	0.00	0	138	0	138	n	0.01	1	66	1	66	n	0.01	1	101	1	101	n	0.01	2	172	2	172	y	0.02	2	118	2	118	y	0.01	2	134	2	134	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000025337.11	Sbds	chr5	protein_coding	SBDS ribosome maturation factor
known_NIR_14324	chr5	134324467;134335585	134335386;134343237	-	134324467	134343237	cassetteExon	ENSMUST00000059042.15	known	0.07	3.0	43	5;1	43	n	0.05	1.0	18	2;0	18	n	0.07	3.0	40	4;2	40	y	0.03	1.0	30	1;1	30	n	0.00	0.0	18	0;0	18	n	0.04	1.5	36	2;1	36	n	0.02	0.5	27	1;0	27	n	0.03	1.0	33	1;1	33	n	0.0449810157898159	2.53332222960036	up	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14356	chr5	135161715	135161963	+	135161715	135161930	A3SS	ENSMUST00000142385.8	known	0.97	199	7	199	7	y	0.98	48	1	48	1	n	0.98	187	3	187	3	y	0.97	68	2	68	2	y	0.99	264	4	264	4	y	0.99	331	2	331	2	y	0.99	276	4	276	4	y	0.98	322	7	322	7	y	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000005373.14	Mlxipl	chr5	protein_coding	MLX interacting protein-like
known_NIR_14474	chr5	139328429;139328987	139328876;139330827	-	139328429	139330827	cassetteExon	ENSMUST00000049630.13	known	0.05	7.5	142	7;8	142	y	0.03	1.5	54	1;2	54	n	0.03	5.5	204	5;6	204	y	0.04	3.5	92	3;4	92	y	0.02	2.5	138	3;2	138	y	0.01	1.0	185	1;1	185	n	0.03	4.0	132	4;4	132	y	0.02	3.0	165	3;3	165	y	0.0327734454476789	2.78151794983659	up	ENSMUSG00000045438.13	Cox19	chr5	protein_coding	cytochrome c oxidase assembly protein 19
known_NIR_14506	chr5	142759800	142760964	-	142759803	142760964	A3SS	ENSMUST00000152247.8	known	0.00	0	25	0	25	n	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	20	0	20	n	0.27	4	11	4	11	y	0.40	6	9	6	9	y	0.14	2	12	2	12	y	0.30	3	7	3	7	y	0.0116474628030229	-4.38667413739265	down	ENSMUSG00000039477.17	Tnrc18	chr5	protein_coding	trinucleotide repeat containing 18
known_NIR_14531	chr5	144817510	144818428	-	144817519	144818428	A3SS	ENSMUST00000110677.8	known	0.21	9	33	9	33	y	0.00	0	12	0	12	n	0.04	1	24	1	24	n	0.00	0	14	0	14	n	0.23	5	17	5	17	y	0.26	12	35	12	35	y	0.26	7	20	7	20	y	0.39	11	17	11	17	y	0.0132376110085231	-3.61836454540875	down	ENSMUSG00000038780.15	Smurf1	chr5	protein_coding	SMAD specific E3 ubiquitin protein ligase 1
known_NIR_14572	chr5	146205096	146208405	+	146205135	146208405	A5SS	ENSMUST00000162494.8	known	0.05	3	56	3	56	y	0.08	2	22	2	22	y	0.04	2	43	2	43	y	0.04	2	43	2	43	y	0.09	4	39	4	39	y	0.16	10	51	10	51	y	0.12	4	28	4	28	y	0.16	12	64	12	64	y	0.010594381216777	-4.10842072810476	down	ENSMUSG00000029635.16	Cdk8	chr5	protein_coding	cyclin-dependent kinase 8
known_NIR_14582	chr5	146896086	146900533	-	146896086;146900190	146900031;146900533	ES	ENSMUST00000016654.9	known	0.68	19	9.0	19	16;2	y	0.55	6	5.0	6	6;4	y	0.48	5	5.5	5	8;3	y	0.57	8	6.0	8	5;7	y	0.67	20	10.0	20	18;2	y	0.75	21	7.0	21	13;1	n	0.74	20	7.0	20	10;4	y	0.68	16	7.5	16	12;3	y	0.0344881062990807	-3.03108891324553	down	ENSMUSG00000016510.12	Mtif3	chr5	protein_coding	mitochondrial translational initiation factor 3
known_NIR_14592	chr5	147474084	147476053	+	147473350	147476053	A5SS	ENSMUST00000031651.15	known	0.15	4	22	4	22	y	0.16	3	16	3	16	y	0.11	2	17	2	17	y	0.25	2	6	2	6	n	0.00	0	19	0	19	n	0.08	1	12	1	12	n	0.12	2	14	2	14	y	0.04	1	23	1	23	n	0.034367379674192	2.73972431275087	up	ENSMUSG00000029647.16	Pan3	chr5	protein_coding	PAN3 poly(A) specific ribonuclease subunit
known_NIR_14617	chr5	150566780	150570466	-	150566780	150574080	A5SS	ENSMUST00000156180.2	known	0.97	114	4	114	4	y	0.97	63	2	63	2	y	0.95	114	6	114	6	y	0.96	49	2	49	2	y	1.00	82	0	82	0	n	1.00	102	0	102	0	n	0.97	111	3	111	3	y	0.99	102	1	102	1	n	0.0217488971517068	-3.22047024073017	down	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
known_NIR_14618	chr5	150571013	150574080	-	150566780	150574080	A3SS	ENSMUST00000156180.2	known	0.96	99	4	99	4	y	0.96	44	2	44	2	y	0.94	95	6	95	6	y	0.97	56	2	56	2	y	1.00	90	0	90	0	n	1.00	99	0	99	0	n	0.97	83	3	83	3	y	0.99	102	1	102	1	n	0.0142043357433742	-3.43375853466993	down	ENSMUSG00000029655.18	N4bp2l2	chr5	protein_coding	NEDD4 binding protein 2-like 2
known_NIR_14668	chr5	24633271	24634414	+	24632634	24634414	A5SS	ENSMUST00000141966.8	known	0.21	9	34	9	34	y	0.00	0	14	0	14	n	0.10	3	26	3	26	y	0.10	2	18	2	18	y	0.39	7	11	7	11	y	0.37	10	17	10	17	y	0.17	4	19	4	19	y	0.25	5	15	5	15	y	0.0299524160693445	-2.8597082079266	down	ENSMUSG00000028962.15	Slc4a2	chr5	protein_coding	solute carrier family 4 (anion exchanger), member 2
known_NIR_14682	chr5	24684787	24687264	+	24684787	24688339	A3SS	ENSMUST00000024123.9	known	0.09	4	40	4	40	y	0.09	2	20	2	20	y	0.09	5	53	5	53	y	0.03	1	29	1	29	n	0.12	3	21	3	21	y	0.15	7	41	7	41	y	0.15	7	39	7	39	y	0.12	6	42	6	42	y	0.019184626915828	-3.46410161513776	down	ENSMUSG00000023353.15	Agap3	chr5	protein_coding	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
known_NIR_14697	chr5	29958650	29961232	+	29958650	29969397	A3SS	ENSMUST00000008733.15	known	0.00	1	210	1	210	n	0.00	0	102	0	102	n	0.01	3	202	3	202	y	0.00	0	99	0	99	n	0.03	4	134	4	134	y	0.02	4	232	4	232	y	0.01	2	204	2	204	y	0.02	3	178	3	178	y	0.0148041432566231	-3.65563077506966	down	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
known_NIR_14698	chr5	29959589	29961232	+	29958650	29961232	A5SS	ENSMUST00000012734.10	known	0.88	7	1	7	1	n	1.00	2	0	2	0	n	0.70	7	3	7	3	y	1.00	3	0	3	0	n	0.33	2	4	2	4	n	0.43	3	4	3	4	n	0.60	3	2	3	2	n	0.50	3	3	3	3	n	0.00363935990086327	4.72936945943864	up	ENSMUSG00000029131.15	Dnajb6	chr5	protein_coding	DnaJ heat shock protein family (Hsp40) member B6
known_NIR_14699	chr5	30267037	30268234	-	30267047	30268234	A3SS	ENSMUST00000141630.8	known	0.96	25	1	25	1	n	1.00	13	0	13	0	n	0.94	32	2	32	2	y	1.00	16	0	16	0	n	0.87	26	4	26	4	y	0.87	45	7	45	7	y	0.91	29	3	29	3	y	0.95	37	2	37	2	y	0.0231843673179005	3.08334919422389	up	ENSMUSG00000025747.13	Tyms	chr5	protein_coding	thymidylate synthase
known_NIR_14720	chr5	31082199;31084166	31084032;31085787	+	31082199	31085787	cassetteExon	ENSMUST00000201571.4	known	0.50	13.0	13	19;7	13	y	0.44	9.5	12	14;5	12	y	0.62	25.0	15	40;10	15	y	0.56	7.5	6	11;4	6	y	0.71	24.0	10	41;7	10	y	0.68	28.0	13	50;6	13	y	0.73	24.0	9	38;10	9	y	0.64	25.0	14	42;8	14	y	0.0175360456355284	-3.68685778868433	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14722	chr5	31082199;31084500	31084032;31085787	+	31082199	31085787	cassetteExon	ENSMUST00000201571.4	known	0.97	451.0	13	19;883	13	y	0.95	227.5	12	14;441	12	y	0.97	575.5	15	40;1111	15	y	0.97	198.0	6	11;385	6	y	0.98	460.5	10	41;880	10	y	0.98	775.0	13	50;1500	13	y	0.99	655.0	9	38;1272	9	y	0.98	571.0	14	42;1100	14	y	0.0307597787889489	-3.1304951684997	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
known_NIR_14740	chr5	31211402	31211659	+	31211402	31211607	A3SS	ENSMUST00000201887.4	known	0.04	19	472	19	472	y	0.07	15	190	15	190	y	0.06	34	550	34	550	y	0.06	13	217	13	217	y	0.02	7	338	7	338	y	0.04	24	577	24	577	y	0.03	12	419	12	419	y	0.04	19	442	19	442	y	0.0214170190931161	3.16227766016838	up	ENSMUSG00000013622.16	Atraid	chr5	protein_coding	all-trans retinoic acid induced differentiation factor
known_NIR_14762	chr5	31457989	31459501	+	31457989;31458209	31458156;31459501	ES	ENSMUST00000201166.4	known	0.04	15	379.5	15	364;395	y	0.04	5	136.0	5	127;145	y	0.03	11	381.0	11	351;411	y	0.06	11	170.0	11	156;184	y	0.02	4	262.5	4	247;278	y	0.01	4	359.5	4	305;414	y	0.00	0	270.5	0	225;316	n	0.01	5	394.5	5	383;406	y	0.00700062140238017	4.33333333333333	up	ENSMUSG00000059434.10	Gckr	chr5	protein_coding	glucokinase regulatory protein
known_NIR_14856	chr5	35998745;36006249	36006148;36014472	+	35998745	36014472	cassetteExon	ENSMUST00000151636.8	known	0.78	7.0	2	5;9	2	y	0.60	1.5	1	1;2	1	n	0.60	1.5	1	1;2	1	n	0.50	2.0	2	2;2	2	n	1.00	1.5	0	1;2	0	n	0.64	3.5	2	1;6	2	n	1.00	1.5	0	1;2	0	n	1.00	2.0	0	2;2	0	n	0.0413601070500836	-2.70426394389691	down	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_14870	chr5	3744893	3750356	-	3744875	3750356	A3SS	ENSMUST00000043551.11	known	0.85	22	4	22	4	y	0.88	15	2	15	2	y	0.77	17	5	17	5	y	0.80	16	4	16	4	y	0.75	9	3	9	3	y	0.69	22	10	22	10	y	0.71	17	7	17	7	y	0.72	18	7	18	7	y	0.0144908824317387	3.88772959667898	up	ENSMUSG00000040351.12	Ankib1	chr5	protein_coding	ankyrin repeat and IBR domain containing 1
known_NIR_14886	chr5	38634836	38640648	-	38634836	38640660	A5SS	ENSMUST00000067872.12	known	0.04	3	74	3	74	y	0.07	2	25	2	25	y	0.08	5	58	5	58	y	0.11	3	25	3	25	y	0.00	0	47	0	47	n	0.04	3	77	3	77	y	0.00	0	57	0	57	n	0.01	1	101	1	101	n	0.0143112697289411	3.62103412188951	up	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14887	chr5	38634836	38640660	-	38634836	38637382	5pMXE	ENSMUST00000067886.12	known	0.82	74	16	74	16	y	0.81	25	6	25	6	y	0.83	58	12	58	12	y	0.81	25	6	25	6	y	0.94	47	3	47	3	y	0.91	77	8	77	8	y	0.89	57	7	57	7	y	0.95	101	5	101	5	y	0.00260067260601583	-7.20294057598538	down	ENSMUSG00000005107.14	Slc2a9	chr5	protein_coding	solute carrier family 2 (facilitated glucose transporter), member 9
known_NIR_14922	chr5	45859339	45893073	-	45859339;45885084	45880316;45893073	ES	ENSMUST00000238522.2	known	0.00	0	0.5	0	0;1	n	-	-	-	-	-	-	0.40	1	1.5	1	3;0	n	0.00	0	1.5	0	1;2	n	0.57	2	1.5	2	2;1	n	0.55	3	2.5	3	1;4	n	0.86	3	0.5	3	1;0	n	0.47	4	4.5	4	7;2	y	0.0450150263705105	-3.02744814944258	down	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14924	chr5	45891827	45893073	-	45859339	45893073	A3SS	ENSMUST00000045586.13	known	1.00	9	0	9	0	n	1.00	5	0	5	0	n	0.80	4	1	4	1	n	1.00	3	0	3	0	n	0.50	2	2	2	2	n	0.75	9	3	9	3	y	0.57	4	3	4	3	n	0.71	10	4	10	4	y	0.00655720494239603	4.11970140547724	up	ENSMUSG00000015882.19	Lcorl	chr5	protein_coding	ligand dependent nuclear receptor corepressor-like
known_NIR_14952	chr5	64980372	64984453	+	64984225	64984453	5pMXE	ENSMUST00000198946.2	known	0.99	79	1	79	1	n	1.00	35	0	35	0	n	0.99	86	1	86	1	n	1.00	59	0	59	0	n	0.97	66	2	66	2	y	0.97	97	3	97	3	y	0.99	69	1	69	1	n	0.97	70	2	70	2	y	0.019184626915828	3.46410161513775	up	ENSMUSG00000029178.15	Klf3	chr5	protein_coding	Kruppel-like factor 3 (basic)
known_NIR_14976	chr5	66203556	66211825	-	66203556	66238282	A5SS	ENSMUST00000094757.9	known	0.55	16	13	16	13	y	0.71	5	2	5	2	n	0.75	15	5	15	5	y	0.84	16	3	16	3	y	0.36	4	7	4	7	y	0.48	10	11	10	11	y	0.67	4	2	4	2	n	0.35	9	17	9	17	y	0.0434192926258139	2.57832317517782	up	ENSMUSG00000070780.12	Rbm47	chr5	protein_coding	RNA binding motif protein 47
known_NIR_15007	chr5	72944121	72946483	-	72944162	72946483	A3SS	ENSMUST00000071944.13	known	0.18	5	23	5	23	y	0.13	2	13	2	13	y	0.05	2	41	2	41	y	0.11	2	17	2	17	y	0.09	2	21	2	21	y	0.00	0	23	0	23	n	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.0362136703673673	2.70968132468671	up	ENSMUSG00000029217.17	Tec	chr5	protein_coding	tec protein tyrosine kinase
known_NIR_15068	chr5	87682955	87683956	-	87682955	87685964	A5SS	ENSMUST00000031199.11	known	0.29	16	39	16	39	y	0.23	3	10	3	10	y	0.13	8	53	8	53	y	0.20	5	20	5	20	y	0.08	4	44	4	44	y	0.15	11	61	11	61	y	0.02	1	51	1	51	n	0.12	5	38	5	38	y	0.033982908763048	2.75601240846343	up	ENSMUSG00000029269.12	Sult1b1	chr5	protein_coding	sulfotransferase family 1B, member 1
known_NIR_15143	chr5	97247539	97251219	-	97247602	97251219	A3SS	ENSMUST00000069453.9	known	0.00	0	16	0	16	n	0.06	1	17	1	17	n	0.00	0	15	0	15	n	0.00	0	12	0	12	n	0.20	2	8	2	8	y	0.07	2	25	2	25	y	0.14	2	12	2	12	y	0.19	4	17	4	17	y	0.0125052267205118	-4.05507201200625	down	ENSMUSG00000055725.12	Paqr3	chr5	protein_coding	progestin and adipoQ receptor family member III
known_NIR_15307	chr6	120376043	120379467	+	120376018	120379467	A5SS	ENSMUST00000135802.8	known	0.00	0	14	0	14	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.08	2	22	2	22	y	0.09	1	10	1	10	n	0.25	5	15	5	15	y	0.25	3	9	3	9	y	0.11	2	16	2	16	y	0.0294336825620481	-3.23784440077598	down	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
known_NIR_15358	chr6	124675140	124676970	+	124675140	124676202	3pMXE	ENSMUST00000141069.8	known	0.01	2	253	2	253	y	0.01	1	121	1	121	n	0.01	2	201	2	201	y	0.02	2	123	2	123	y	0.02	3	150	3	150	y	0.02	7	293	7	293	y	0.02	3	164	3	164	y	0.03	8	265	8	265	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000004270.14	Lpcat3	chr6	protein_coding	lysophosphatidylcholine acyltransferase 3
known_NIR_15359	chr6	124675140	124676970	+	124675140;124676308	124676202;124676970	ES	ENSMUST00000135516.8	known	0.01	2	242.0	2	253;231	y	0.01	1	106.5	1	121;92	n	0.01	2	194.5	2	201;188	y	0.02	2	117.0	2	123;111	y	0.02	3	145.5	3	150;141	y	0.02	7	289.5	7	293;286	y	0.02	3	167.5	3	164;171	y	0.03	8	263.5	8	265;262	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000004270.14	Lpcat3	chr6	protein_coding	lysophosphatidylcholine acyltransferase 3
known_NIR_15426	chr6	128413677	128414573	-	128413677	128415369	A5SS	ENSMUST00000139448.7	known	0.06	20	290	20	290	y	0.11	8	64	8	64	y	0.06	17	263	17	263	y	0.08	7	79	7	79	y	0.02	4	235	4	235	y	0.05	17	298	17	298	y	0.03	8	296	8	296	y	0.03	8	304	8	304	y	0.0229974280958304	3.36189315436933	up	ENSMUSG00000030357.11	Fkbp4	chr6	protein_coding	FK506 binding protein 4
known_NIR_15454	chr6	134738397	134768201	-	134738397	134769240	A5SS	ENSMUST00000129433.4	known	0.14	3	19	3	19	y	0.14	2	12	2	12	y	0.09	2	21	2	21	y	0.07	1	13	1	13	n	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	8	0	8	n	0.00	0	20	0	20	n	0.0155065995142821	3.36189315436933	up	ENSMUSG00000030203.18	Dusp16	chr6	protein_coding	dual specificity phosphatase 16
known_NIR_15474	chr6	136910771	136918649	-	136910771	136918436	5pMXE	ENSMUST00000111892.8	known	0.92	24	2	24	2	y	1.00	8	0	8	0	n	0.93	14	1	14	1	n	0.90	9	1	9	1	n	0.75	6	2	6	2	n	0.75	6	2	6	2	n	0.69	11	5	11	5	y	0.90	9	1	9	1	n	0.0261497846804624	3.31383653867266	up	ENSMUSG00000030220.14	Arhgdib	chr6	protein_coding	Rho, GDP dissociation inhibitor (GDI) beta
known_NIR_15493	chr6	138120030	138124657	+	138118880	138124657	A5SS	ENSMUST00000118091.8	known	0.49	163	172	163	172	y	0.51	80	77	80	77	y	0.38	147	241	147	241	y	0.56	91	72	91	72	y	0.32	99	206	99	206	y	0.40	174	264	174	264	y	0.37	138	240	138	240	y	0.33	118	236	118	236	y	0.0331206537810779	3.07841444805905	up	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
known_NIR_15551	chr6	146914016;146914445	146914416;146917720	+	146914016	146917720	cassetteExon	ENSMUST00000016631.14	known	0.10	3.5	32	4;3	32	y	0.12	1.5	11	2;1	11	n	0.17	4.0	20	4;4	20	y	0.09	2.0	20	3;1	20	n	0.18	3.0	14	3;3	14	y	0.25	6.5	20	8;5	20	y	0.20	3.0	12	4;2	12	y	0.17	5.0	24	4;6	24	y	0.0191029704006164	-3.17887765695611	down	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15555	chr6	147412400;147434861	147434774;147435527	+	147412400	147435527	cassetteExon	ENSMUST00000032441.14	known	0.07	5.5	76	3;8	76	y	0.06	2.5	39	2;3	39	y	0.04	2.5	65	3;2	65	y	0.05	1.5	30	3;0	30	n	0.04	1.0	27	0;2	27	n	0.02	1.5	65	1;2	65	n	0.02	1.0	41	1;1	41	n	0.04	2.0	55	2;2	55	y	0.028201231297682	2.88675134594813	up	ENSMUSG00000030301.18	Ccdc91	chr6	protein_coding	coiled-coil domain containing 91
known_NIR_15624	chr6	24527316	24527459	-	24527316	24527525	A5SS	ENSMUST00000118558.5	known	0.00	1	231	1	231	n	0.00	0	94	0	94	n	0.01	4	305	4	305	y	0.00	0	86	0	86	n	0.01	3	201	3	201	y	0.01	2	292	2	292	y	0.01	2	211	2	211	y	0.02	4	240	4	240	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000023089.13	Ndufa5	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit A5
known_NIR_15630	chr6	29356696	29361559	+	29356696	29361293	A3SS&ES	ENSMUST00000173694.5	known	0.40	83	124	83	124	y	0.39	82	130	82	130	y	0.40	67	101	67	101	y	0.33	71	146	71	146	y	0.51	39	38	39	38	y	0.58	86	63	86	63	y	0.53	39	34	39	34	y	0.48	86	92	86	92	y	0.00195568812564737	-5.38516480713451	down	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15631	chr6	29356696;29361486	29361293;29361559	+	29356696	29361559	cassetteExon	ENSMUST00000090481.14	known	0.43	63.5	83	124;3	83	y	0.44	65.0	82	130;0	82	n	0.43	50.5	67	101;0	67	n	0.51	75.0	71	146;4	71	y	0.33	19.0	39	38;0	39	n	0.27	32.5	86	63;2	86	y	0.30	17.0	39	34;0	39	n	0.35	47.0	86	92;2	86	y	0.00176121206029282	5.37204762688507	up	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15632	chr6	29356696;29361752	29361559;29366039	+	29356696;29361486	29361293;29366039	MXE	ENSMUST00000172974.8	known	0.47	106.0	120.5	83;129	124;117	y	0.40	100.5	149.0	82;119	130;168	y	0.45	85.0	106.0	67;103	101;111	y	0.36	95.0	166.0	71;119	146;186	y	0.53	56.0	49.5	39;73	38;61	y	0.53	87.5	78.5	86;89	63;94	y	0.51	48.5	46.5	39;58	34;59	y	0.47	81.5	90.5	86;77	92;89	y	0.0271648284885027	-3.14934395500694	down	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15731	chr6	38545852	38547445	+	38528843	38547445	A5SS	ENSMUST00000161538.8	known	0.65	41	22	41	22	y	0.40	19	28	19	28	y	0.55	43	35	43	35	y	0.58	33	24	33	24	y	0.83	43	9	43	9	y	0.66	64	33	64	33	y	0.72	33	13	33	13	y	0.68	75	36	75	36	y	0.0375111249113956	-2.73414180119214	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
known_NIR_15745	chr6	39569737	39573385	+	39569646	39573385	A5SS	ENSMUST00000135671.8	known	0.02	9	478	9	478	y	0.01	3	278	3	278	y	0.02	9	551	9	551	y	0.01	3	255	3	255	y	0.01	3	423	3	423	y	0.00	2	626	2	626	y	0.00	2	525	2	525	y	0.01	4	512	4	512	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000002416.14	Ndufb2	chr6	protein_coding	NADH:ubiquinone oxidoreductase subunit B2
known_NIR_15749	chr6	3968050	3974531	-	3968050	3968237	5pMXE	ENSMUST00000031674.11	known	0.80	87	22	87	22	y	0.83	57	12	57	12	y	0.79	74	20	74	20	y	0.86	70	11	70	11	y	0.89	97	12	97	12	y	0.86	150	24	150	24	y	0.94	95	6	95	6	y	0.93	125	10	125	10	y	0.0134208745894478	-3.49446242012041	down	ENSMUSG00000029664.11	Tfpi2	chr6	protein_coding	tissue factor pathway inhibitor 2
known_NIR_15753	chr6	40448759	40449005	+	40448393	40449005	A5SS	ENSMUST00000114779.9	known	0.37	28	48	28	48	y	0.29	9	22	9	22	y	0.31	23	51	23	51	y	0.29	10	24	10	24	y	0.38	21	34	21	34	y	0.35	28	51	28	51	y	0.41	28	41	28	41	y	0.38	24	40	24	40	y	0.0333989563195473	-2.88296295672283	down	ENSMUSG00000029911.15	Ssbp1	chr6	protein_coding	single-stranded DNA binding protein 1
known_NIR_15760	chr6	4081635	4082458	-	4080017	4082458	A3SS	ENSMUST00000049166.5	known	0.02	6	348	6	348	y	0.02	6	239	6	239	y	0.02	6	355	6	355	y	0.04	11	257	11	257	y	0.01	3	243	3	243	y	0.00	0	362	0	362	n	0.00	0	319	0	319	n	0.02	7	299	7	299	y	0.0448673860955737	2.52810291480115	up	ENSMUSG00000032757.7	Bet1	chr6	protein_coding	Bet1 golgi vesicular membrane trafficking protein
known_NIR_15762	chr6	42327053	42327191	+	42326639	42327191	A5SS	ENSMUST00000203329.3	known	0.73	11	4	11	4	y	0.78	7	2	7	2	n	0.87	13	2	13	2	y	0.67	2	1	2	1	n	1.00	9	0	9	0	n	0.86	12	2	12	2	y	0.88	15	2	15	2	y	0.93	14	1	14	1	n	0.0283364325842843	-2.94903926375786	down	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15833	chr6	48815296	48817930	-	48815296	48817295	5pMXE	ENSMUST00000203618.2	known	0.34	239	466	239	466	y	0.25	113	340	113	340	y	0.40	223	337	223	337	y	0.31	168	378	168	378	y	0.37	127	213	127	213	y	0.43	177	239	177	239	y	0.45	121	148	121	148	y	0.46	171	204	171	204	y	0.0388460512365717	-2.75795845538488	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15835	chr6	48815296	48817930	-	48817387	48817930	A3SS&ES	ENSMUST00000101429.11	known	0.34	239	465	239	465	y	0.27	113	305	113	305	y	0.36	223	398	223	398	y	0.30	168	391	168	391	y	0.37	127	212	127	212	y	0.37	177	299	177	299	y	0.39	121	187	121	187	y	0.40	171	252	171	252	y	0.0415344059027121	-3.0224386073393	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15837	chr6	48815296;48817387	48817295;48817930	-	48815296	48817930	cassetteExon	ENSMUST00000204073.3	known	0.66	465.5	239	466;465	239	y	0.74	322.5	113	340;305	113	y	0.62	367.5	223	337;398	223	y	0.70	384.5	168	378;391	168	y	0.63	212.5	127	213;212	127	y	0.60	269.0	177	239;299	177	y	0.58	167.5	121	148;187	121	y	0.57	228.0	171	204;252	171	y	0.0373439363797488	2.92987344706927	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15840	chr6	48815299	48816272	-	48815299	48818282	A5SS	ENSMUST00000205147.3	known	0.59	24	17	24	17	y	0.72	23	9	23	9	y	0.54	14	12	14	12	y	0.65	13	7	13	7	y	0.38	6	10	6	10	y	0.48	12	13	12	13	y	0.46	6	7	6	7	y	0.35	6	11	6	11	y	0.00652430874679685	4.16565058979651	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15841	chr6	48815299	48817295	-	48816379	48817295	A3SS&ES	ENSMUST00000203355.3	known	0.97	753	23	753	23	y	0.97	516	18	516	18	y	0.97	533	14	533	14	y	0.98	622	12	622	12	y	0.99	321	2	321	2	y	0.99	444	6	444	6	y	0.98	246	4	246	4	y	0.98	342	8	342	8	y	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15842	chr6	48815299	48817930	-	48815299	48817295	5pMXE	ENSMUST00000164733.4	known	0.38	465	753	465	753	y	0.30	222	516	222	516	y	0.45	441	533	441	533	y	0.35	329	622	329	622	y	0.48	296	321	296	321	y	0.44	352	444	352	444	y	0.50	248	246	248	246	y	0.48	314	342	314	342	y	0.0366777859382481	-3.10756082910204	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15843	chr6	48815299	48817930	-	48817387	48817930	A3SS&ES	ENSMUST00000203229.3	known	0.50	465	465	465	465	y	0.42	222	305	222	305	y	0.53	441	398	441	398	y	0.46	329	391	329	391	y	0.58	296	212	296	212	y	0.54	352	299	352	299	y	0.57	248	187	248	187	y	0.55	314	252	314	252	y	0.0340208567605845	-3.22047024073016	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15844	chr6	48815299	48818282	-	48815299	48817295	5pMXE	ENSMUST00000164733.4	known	0.02	17	753	17	753	y	0.02	9	516	9	516	y	0.02	12	533	12	533	y	0.01	7	622	7	622	y	0.03	10	321	10	321	y	0.03	13	444	13	444	y	0.03	7	246	7	246	y	0.03	11	342	11	342	y	0.0153924380733023	-5	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15847	chr6	48815299;48816379	48816272;48817295	-	48815299	48817295	cassetteExon	ENSMUST00000164733.4	known	0.03	23.5	753	24;23	753	y	0.04	20.5	516	23;18	516	y	0.03	14.0	533	14;14	533	y	0.02	12.5	622	13;12	622	y	0.01	4.0	321	6;2	321	y	0.02	9.0	444	12;6	444	y	0.02	5.0	246	6;4	246	y	0.02	7.0	342	6;8	342	y	0.0478566196408535	2.61116483933547	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15848	chr6	48815299;48817387	48817295;48817930	-	48815299	48817930	cassetteExon	ENSMUST00000166247.8	known	0.57	609.0	465	753;465	465	y	0.65	410.5	222	516;305	222	y	0.51	465.5	441	533;398	441	y	0.61	506.5	329	622;391	329	y	0.47	266.5	296	321;212	296	y	0.51	371.5	352	444;299	352	y	0.47	216.5	248	246;187	248	y	0.49	297.0	314	342;252	314	y	0.03840881982598	3.1889640207164	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15849	chr6	48815299;48817387	48817295;48818282	-	48815299	48818282	cassetteExon	ENSMUST00000205147.3	known	0.96	378.5	17	753;4	17	y	0.97	259.5	9	516;3	9	y	0.96	266.5	12	533;0	12	n	0.98	311.0	7	622;0	7	n	0.94	160.5	10	321;0	10	n	0.95	223.5	13	444;3	13	y	0.95	124.0	7	246;2	7	y	0.94	171.5	11	342;1	11	n	0.0103788059312499	4.02492235949963	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15867	chr6	51438413	51440391	-	51438413	51438900	5pMXE	ENSMUST00000204885.2	known	0.78	403	111	403	111	y	0.90	418	45	418	45	y	0.70	372	162	372	162	y	0.84	327	61	327	61	y	0.64	198	113	198	113	y	0.66	357	181	357	181	y	0.69	255	112	255	112	y	0.68	315	149	315	149	y	0.0444434790857176	3.11542651220361	up	ENSMUSG00000004980.17	Hnrnpa2b1	chr6	protein_coding	heterogeneous nuclear ribonucleoprotein A2/B1
known_NIR_15877	chr6	51521629	51538998	+	51501014	51538998	A5SS	ENSMUST00000049152.15	known	0.94	135	8	135	8	y	0.96	86	4	86	4	y	0.95	125	7	125	7	y	0.93	75	6	75	6	y	0.96	52	2	52	2	y	0.98	79	2	79	2	y	0.98	48	1	48	1	n	0.98	60	1	60	1	n	0.0115842322957838	-3.67423461417477	down	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15947	chr6	71520951	71529383	+	71521017	71529383	A5SS	ENSMUST00000059462.12	known	0.00	0	248	0	248	n	0.01	2	133	2	133	y	0.00	0	263	0	263	n	0.00	0	103	0	103	n	0.01	2	178	2	178	y	0.01	3	281	3	281	y	0.02	4	225	4	225	y	0.01	3	256	3	256	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000053119.12	Chmp3	chr6	protein_coding	charged multivesicular body protein 3
known_NIR_15968	chr6	71840254	71845564	+	71840254;71843724	71843710;71845564	ES	ENSMUST00000064062.13	known	0.13	34	226.5	34	222;231	y	0.10	11	99.0	11	96;102	y	0.09	25	266.5	25	255;278	y	0.11	13	103.5	13	97;110	y	0.09	16	165.5	16	161;170	y	0.05	16	276.0	16	269;283	y	0.05	10	212.0	10	210;214	y	0.05	11	207.5	11	198;217	y	0.011678872204607	3.61222822798952	up	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15978	chr6	72092363	72105248	+	72074766	72105248	A5SS	ENSMUST00000069994.11	known	0.85	407	71	407	71	y	0.93	594	46	594	46	y	0.95	535	31	535	31	y	0.91	399	40	399	40	y	0.73	77	28	77	28	y	0.86	236	39	236	39	y	0.79	150	39	150	39	y	0.71	102	41	102	41	y	0.0180203282625856	3.43080573853493	up	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
known_NIR_15979	chr6	72092363	72105248	+	72074978	72105248	A5SS	ENSMUST00000114112.4	known	0.98	407	10	407	10	y	1.00	594	2	594	2	y	0.99	535	6	535	6	y	1.00	399	1	399	1	n	0.97	77	2	77	2	y	0.98	236	4	236	4	y	0.98	150	3	150	3	y	0.97	102	3	102	3	y	0.0264653665333925	3.1304951684997	up	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
known_NIR_16116	chr6	85893089	85898405	+	85892772	85898405	A5SS	ENSMUST00000113751.8	known	0.36	42	75	42	75	y	0.27	7	19	7	19	y	0.30	28	64	28	64	y	0.33	13	26	13	26	y	0.20	24	94	24	94	y	0.20	33	132	33	132	y	0.22	29	100	29	100	y	0.22	30	104	30	104	y	0.00914178290684004	5.19615242270663	up	ENSMUSG00000054226.14	Tprkb	chr6	protein_coding	Tp53rk binding protein
known_NIR_16124	chr6	85930476	85930819	-	85930476	85935566	A5SS	ENSMUST00000032071.13	known	0.22	10	36	10	36	y	0.23	7	23	7	23	y	0.15	11	64	11	64	y	0.21	10	38	10	38	y	0.10	5	44	5	44	y	0.06	4	62	4	62	y	0.10	6	52	6	52	y	0.14	11	70	11	70	y	0.00566646390758166	4.22134907178567	up	ENSMUSG00000030002.16	Dusp11	chr6	protein_coding	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)
known_NIR_16182	chr6	87902792;87909964	87909845;87910224	+	87902792	87910224	cassetteExon	ENSMUST00000032141.14	known	0.12	5.0	38	2;8	38	y	0.08	1.5	18	0;3	18	n	0.11	3.0	24	1;5	24	n	0.03	0.5	19	0;1	19	n	0.05	1.0	18	0;2	18	n	0.04	2.0	43	0;4	43	n	0.00	0.0	32	0;0	32	n	0.00	0.0	27	0;0	27	n	0.04730816908548	2.59237923682606	up	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
known_NIR_16259	chr7	100220496	100232197	-	100220496	100223669	A5SS&ES	ENSMUST00000146003.9	known	0.00	0	116	0	116	n	0.00	0	46	0	46	n	0.01	1	114	1	114	n	0.00	0	54	0	54	n	0.01	1	101	1	101	n	0.01	2	155	2	155	y	0.02	2	127	2	127	y	0.02	2	129	2	129	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16260	chr7	100220496	100232197	-	100220496;100223721	100223669;100232197	ES	ENSMUST00000150042.8	known	0.00	0	103.0	0	116;90	n	0.00	0	36.5	0	46;27	n	0.01	1	117.5	1	114;121	n	0.00	0	44.0	0	54;34	n	0.01	1	90.0	1	101;79	n	0.01	2	142.0	2	155;129	y	0.02	2	105.0	2	127;83	y	0.02	2	120.5	2	129;112	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000030706.18	Mrpl48	chr7	protein_coding	mitochondrial ribosomal protein L48
known_NIR_16271	chr7	100648307	100660919	-	100648307	100652771	5pMXE	ENSMUST00000208340.2	known	0.07	3	39	3	39	y	0.07	2	26	2	26	y	0.06	2	34	2	34	y	0.07	2	27	2	27	y	0.00	0	28	0	28	n	0.00	0	31	0	31	n	0.00	0	23	0	23	n	0.00	0	28	0	28	n	0.000111490776210507	27	up	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
known_NIR_16272	chr7	100648307	100660919	-	100648307;100652961	100652771;100660919	ES	ENSMUST00000037540.5	known	0.08	3	35.5	3	39;32	y	0.09	2	20.5	2	26;15	y	0.05	2	34.5	2	34;35	y	0.08	2	24.0	2	27;21	y	0.00	0	18.5	0	28;9	n	0.00	0	28.0	0	31;25	n	0.00	0	19.0	0	23;15	n	0.00	0	24.5	0	28;21	n	0.00323903707654442	8.66025403784439	up	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
known_NIR_16276	chr7	100946440	100949319	-	100948315	100949319	3pMXE	ENSMUST00000207121.2	known	0.05	1	21	1	21	n	0.06	2	31	2	31	y	0.03	1	36	1	36	n	0.05	1	21	1	21	n	0.11	2	16	2	16	y	0.05	1	19	1	19	n	0.11	1	8	1	8	n	0.11	2	17	2	17	y	0.0429221192760947	-2.92019846159779	down	ENSMUSG00000047767.18	Atg16l2	chr7	protein_coding	autophagy related 16-like 2 (S. cerevisiae)
known_NIR_16294	chr7	101053632;101054172	101054140;101057254	+	101053632	101057254	cassetteExon	ENSMUST00000107010.9	known	0.06	7.0	120	7;7	120	y	0.06	4.0	66	4;4	66	y	0.06	6.5	95	8;5	95	y	0.08	6.5	77	7;6	77	y	0.01	0.5	86	0;1	86	n	0.01	0.5	98	0;1	98	n	0.00	0.5	136	1;0	136	n	0.00	0.0	108	0;0	108	n	0.000179858239791906	10.3923048454133	up	ENSMUSG00000032812.19	Arap1	chr7	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
known_NIR_16297	chr7	101355793;101360707	101360618;101371912	+	101355793	101371912	cassetteExon	ENSMUST00000001884.14	known	0.04	3.5	90	3;4	90	y	0.03	2.0	68	1;3	68	n	0.02	1.5	98	1;2	98	n	0.02	1.0	60	0;2	60	n	0.02	1.5	59	0;3	59	n	0.01	0.5	99	0;1	99	n	0.01	0.5	78	0;1	78	n	0.01	0.5	68	0;1	68	n	0.0435576347221575	2.77746029931765	up	ENSMUSG00000001829.18	Clpb	chr7	protein_coding	ClpB caseinolytic peptidase B
known_NIR_16307	chr7	101547024	101547154	+	101547024	101547149	A3SS	ENSMUST00000209334.2	known	0.14	10	59	10	59	y	0.04	1	23	1	23	n	0.10	7	62	7	62	y	0.06	2	31	2	31	y	0.16	9	46	9	46	y	0.16	10	52	10	52	y	0.14	10	60	10	60	y	0.16	9	47	9	47	y	0.0476503883849479	-3.07958941544842	down	ENSMUSG00000030649.19	Anapc15	chr7	protein_coding	anaphase promoting complex C subunit 15
known_NIR_16323	chr7	101666558	101667317	-	101666558;101666844	101666804;101667317	ES	ENSMUST00000094134.5	known	0.09	6	58.0	6	116;0	n	0.02	1	43.0	1	86;0	n	0.00	0	41.0	0	82;0	n	0.03	1	34.0	1	68;0	n	0.28	5	13.0	5	26;0	n	0.21	4	15.5	4	31;0	n	0.17	3	14.5	3	29;0	n	0.09	2	20.5	2	41;0	n	0.0226446488379604	-3.45529122262583	down	ENSMUSG00000070427.5	Il18bp	chr7	protein_coding	interleukin 18 binding protein
known_NIR_16324	chr7	101666558	101667317	-	101666558;101666871	101666804;101667317	ES	ENSMUST00000209844.2	known	0.08	6	68.0	6	116;20	y	0.02	1	49.0	1	86;12	n	0.00	0	49.5	0	82;17	n	0.03	1	36.5	1	68;5	n	0.24	5	15.5	5	26;5	y	0.19	4	17.0	4	31;3	y	0.16	3	16.0	3	29;3	y	0.08	2	24.5	2	41;8	y	0.0191200084000888	-3.59202656828379	down	ENSMUSG00000070427.5	Il18bp	chr7	protein_coding	interleukin 18 binding protein
known_NIR_16338	chr7	101825612	101829635	-	101825612	101829584	A5SS	ENSMUST00000210682.2	known	0.67	10	5	10	5	y	0.80	12	3	12	3	y	0.59	13	9	13	9	y	0.71	15	6	15	6	y	0.82	9	2	9	2	y	0.92	12	1	12	1	n	1.00	5	0	5	0	n	0.89	16	2	16	2	y	0.0100011778228473	-3.7450346393676	down	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
known_NIR_16339	chr7	101845095	101858946	-	101845095	101859225	A5SS	ENSMUST00000210682.2	known	0.43	3	4	3	4	n	0.35	6	11	6	11	y	0.50	4	4	4	4	n	0.44	4	5	4	5	n	0.00	0	7	0	7	n	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.11	1	8	1	8	n	0.031398709184647	3.23831062186602	up	ENSMUSG00000063550.9	Nup98	chr7	protein_coding	nucleoporin 98
known_NIR_16343	chr7	101859798	101872586	+	101872357	101872586	5pMXE	ENSMUST00000156529.8	known	0.44	19	24	19	24	y	0.43	9	12	9	12	y	0.31	13	29	13	29	y	0.56	9	7	9	7	y	0.26	7	20	7	20	y	0.29	11	27	11	27	y	0.19	4	17	4	17	y	0.08	3	35	3	35	y	0.0160887211577966	3.32554257971197	up	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16345	chr7	101859798;101872357	101871989;101872586	+	101859798	101872586	cassetteExon	ENSMUST00000120879.8	known	0.62	31.5	19	39;24	19	y	0.59	13.0	9	14;12	9	y	0.65	24.0	13	19;29	13	y	0.47	8.0	9	9;7	9	y	0.69	15.5	7	11;20	7	y	0.69	24.0	11	21;27	11	y	0.74	11.5	4	6;17	4	y	0.90	27.5	3	20;35	3	y	0.0366109476783262	-2.71687234680564	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16348	chr7	101872357	101872586	+	101872008	101872586	A5SS	ENSMUST00000147536.8	known	0.36	24	42	24	42	y	0.41	12	17	12	17	y	0.58	29	21	29	21	y	0.37	7	12	7	12	y	0.62	20	12	20	12	y	0.56	27	21	27	21	y	0.71	17	7	17	7	y	0.62	35	21	35	21	y	0.0218031670074638	-3.30411881841146	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16351	chr7	101872504	101872586	+	101859798	101872586	A5SS	ENSMUST00000120879.8	known	0.10	2	19	2	19	y	0.00	0	9	0	9	n	0.38	8	13	8	13	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.45	9	11	9	11	y	0.50	4	4	4	4	n	0.73	8	3	8	3	y	0.043135962001193	-2.55884782530023	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16374	chr7	105039559;105040874	105040784;105049091	-	105039559	105049091	cassetteExon	ENSMUST00000179474.9	known	0.07	1.5	20	3;0	20	n	0.00	0.0	6	0;0	6	n	0.10	1.5	13	2;1	13	n	0.09	1.0	10	2;0	10	n	0.30	3.0	7	4;2	7	y	0.30	3.5	8	4;3	8	y	0.47	3.5	4	4;3	4	y	0.14	3.0	18	6;0	18	n	0.0328519430501247	-3.34277792549592	down	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
known_NIR_16377	chr7	105268435	105268590	-	105268417	105268590	A3SS	ENSMUST00000106791.8	known	0.13	2	13	2	13	y	0.07	2	28	2	28	y	0.19	3	13	3	13	y	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.0334123567872662	3.7370465934183	up	ENSMUSG00000036989.17	Trim3	chr7	protein_coding	tripartite motif-containing 3
known_NIR_16432	chr7	110436477	110443006	-	110436477	110443546	A5SS	ENSMUST00000177236.8	known	0.11	8	68	8	68	y	0.06	2	32	2	32	y	0.07	4	53	4	53	y	0.07	2	25	2	25	y	0.02	1	40	1	40	n	0.04	3	72	3	72	y	0.05	2	38	2	38	y	0.00	0	65	0	65	n	0.018860989871517	3.1889640207164	up	ENSMUSG00000030788.17	Rnf141	chr7	protein_coding	ring finger protein 141
known_NIR_16438	chr7	111677166;111679438	111679379;111681637	+	111677166	111681637	cassetteExon	ENSMUST00000106653.4	known	0.27	41.5	113	44;39	113	y	0.35	27.0	51	32;22	51	y	0.28	44.5	112	38;51	112	y	0.35	34.0	62	34;34	62	y	0.26	25.0	73	27;23	73	y	0.26	39.5	115	37;42	115	y	0.17	15.0	72	16;14	72	y	0.23	39.5	132	36;43	132	y	0.0348653457066321	2.71564317113959	up	ENSMUSG00000059263.10	Usp47	chr7	protein_coding	ubiquitin specific peptidase 47
known_NIR_16452	chr7	114152588	114161968	-	114152588	114153826	5pMXE	ENSMUST00000128587.8	known	0.06	5	78	5	78	y	0.05	1	18	1	18	n	0.05	3	62	3	62	y	0.10	4	37	4	37	y	0.11	7	54	7	54	y	0.11	7	57	7	57	y	0.13	6	41	6	41	y	0.12	6	43	6	43	y	0.0153663950030433	-4.09228975550827	down	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16454	chr7	114152588;114153870	114153826;114161968	-	114152588	114161968	cassetteExon	ENSMUST00000211506.2	known	0.89	40.0	5	78;2	5	y	0.90	9.0	1	18;0	1	n	0.91	31.0	3	62;0	3	n	0.84	21.0	4	37;5	4	y	0.79	27.0	7	54;0	7	n	0.80	28.5	7	57;0	7	n	0.78	21.5	6	41;2	6	y	0.78	21.5	6	43;0	6	n	0.00559095783037187	5.99409157906914	up	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16455	chr7	114152588;114153967	114153826;114161968	-	114152588	114161968	cassetteExon	ENSMUST00000211506.2	known	0.93	71.0	5	78;64	5	y	0.94	16.0	1	18;14	1	n	0.95	54.0	3	62;46	3	y	0.91	40.0	4	37;43	4	y	0.86	42.0	7	54;30	7	y	0.90	60.0	7	57;63	7	y	0.89	47.0	6	41;53	6	y	0.90	53.0	6	43;63	6	y	0.0125824220761203	3.53009043248732	up	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16505	chr7	119433624	119443071	+	119433624;119442557	119442465;119443071	ES	ENSMUST00000106520.9	known	0.15	2	11.5	2	13;10	y	-	-	-	-	-	-	0.14	1	6.0	1	2;10	n	0.00	0	3.0	0	0;6	n	0.57	4	3.0	4	2;4	y	0.14	1	6.0	1	3;9	n	0.40	2	3.0	2	4;2	n	0.40	1	1.5	1	2;1	n	0.0442039148974763	-2.77830092417718	down	ENSMUSG00000030924.17	Rexo5	chr7	protein_coding	RNA exonuclease 5
known_NIR_16592	chr7	126396948;126397298	126397146;126398217	-	126396948	126398217	cassetteExon	ENSMUST00000032934.12	known	0.03	5.0	153	6;4	153	y	0.04	3.0	79	3;3	79	y	0.03	8.5	245	12;5	245	y	0.03	2.0	61	4;0	61	n	0.01	1.0	100	2;0	100	n	0.01	1.0	146	1;1	146	n	0.03	4.5	154	8;1	154	n	0.02	3.5	163	3;4	163	y	0.0435576347221575	2.77746029931765	up	ENSMUSG00000030695.17	Aldoa	chr7	protein_coding	aldolase A, fructose-bisphosphate
known_NIR_16624	chr7	126810935	126812033	+	126808123	126812033	A5SS	ENSMUST00000206772.2	known	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	759	3	759	3	y	1.00	3	0	3	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0364401235245654	5.09426708108493	up	ENSMUSG00000030672.13	Mylpf	chr7	protein_coding	myosin light chain, phosphorylatable, fast skeletal muscle
known_NIR_16722	chr7	128050443	128056660	-	128050494	128056660	A3SS	ENSMUST00000106226.9	known	0.84	107	21	107	21	y	0.84	49	9	49	9	y	0.80	69	17	69	17	y	0.79	34	9	34	9	y	0.86	74	12	74	12	y	0.86	101	17	101	17	y	0.87	61	9	61	9	y	0.87	111	17	111	17	y	0.0334009147236029	-3.52821142536399	down	ENSMUSG00000030846.16	Tial1	chr7	protein_coding	Tia1 cytotoxic granule-associated RNA binding protein-like 1
known_NIR_16727	chr7	129798104;129800293	129800149;129802713	-	129798104;129801635	129801488;129802713	MXE	ENSMUST00000120187.9	known	0.13	4.5	30.0	3;6	33;27	y	0.14	3.5	21.5	5;2	29;14	y	0.13	3.0	20.5	5;1	24;17	n	0.17	4.0	20.0	7;1	25;15	n	0.06	1.0	14.5	0;2	17;12	n	0.10	4.0	38.0	4;4	45;31	y	0.10	2.0	18.0	1;3	20;16	n	0.04	1.5	37.0	2;1	45;29	n	0.0122678722760387	3.80571198445301	up	ENSMUSG00000030849.19	Fgfr2	chr7	protein_coding	fibroblast growth factor receptor 2
known_NIR_16744	chr7	130331558;130333296	130333261;130335236	+	130331558	130335236	cassetteExon	ENSMUST00000207789.2	known	0.05	4.5	85	2;7	85	y	0.02	2.0	95	2;2	95	y	0.03	6.5	215	6;7	215	y	0.02	1.5	63	0;3	63	n	0.00	0.0	41	0;0	41	n	0.00	0.0	43	0;0	43	n	0.00	0.0	27	0;0	27	n	0.00	0.0	35	0;0	35	n	0.0239811997906567	4.24264068711928	up	ENSMUSG00000030852.19	Tacc2	chr7	protein_coding	transforming, acidic coiled-coil containing protein 2
known_NIR_16755	chr7	130510155	130512562	+	130510155	130511318	3pMXE	ENSMUST00000136963.8	known	0.24	4	13	4	13	y	0.05	1	18	1	18	n	0.14	2	12	2	12	y	0.10	1	9	1	9	n	0.75	6	2	6	2	n	0.43	3	4	3	4	n	0.33	2	4	2	4	n	1.00	3	0	3	0	n	0.0438187576442279	-3.12674888718158	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16756	chr7	130510155	130512562	+	130510155;130511358	130511318;130512562	ES	ENSMUST00000075181.11	known	0.27	4	11.0	4	13;9	y	0.07	1	13.5	1	18;9	n	0.17	2	10.0	2	12;8	y	0.14	1	6.0	1	9;3	n	0.75	6	2.0	6	2;2	y	0.50	3	3.0	3	4;2	n	0.40	2	3.0	2	4;2	n	1.00	3	0.0	3	0;0	n	0.0286734373396438	-3.55371921053431	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16757	chr7	130510155	130512562	+	130510155;130511465	130511318;130512562	ES	ENSMUST00000120441.8	known	0.35	4	7.5	4	13;2	y	0.10	1	9.0	1	18;0	n	0.25	2	6.0	2	12;0	n	0.18	1	4.5	1	9;0	n	0.86	6	1.0	6	2;0	n	0.60	3	2.0	3	4;0	n	0.50	2	2.0	2	4;0	n	1.00	3	0.0	3	0;0	n	0.0133153564214091	-4.10029696889879	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16758	chr7	130510155;130511388	130511318;130512562	+	130510155	130512562	cassetteExon	ENSMUST00000048180.12	known	0.68	8.5	4	13;4	4	y	0.90	9.5	1	18;1	1	n	0.75	6.0	2	12;0	2	n	0.82	4.5	1	9;0	1	n	0.25	2.0	6	2;2	6	y	0.50	3.0	3	4;2	3	n	0.50	2.0	2	4;0	2	n	0.14	0.5	3	0;1	3	n	0.00975041970899585	4.29822655185295	up	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16796	chr7	133269420	133273098	+	133269420	133273095	A3SS	ENSMUST00000051169.13	known	0.26	13	37	13	37	y	0.21	4	15	4	15	y	0.21	10	37	10	37	y	0.32	10	21	10	21	y	0.14	8	49	8	49	y	0.16	8	43	8	43	y	0.22	10	35	10	35	y	0.09	5	48	5	48	y	0.0406917825235912	2.6	up	ENSMUSG00000039990.17	Edrf1	chr7	protein_coding	erythroid differentiation regulatory factor 1
known_NIR_16820	chr7	138470236	138472119	+	138470236	138471419	3pMXE	ENSMUST00000148453.8	known	0.08	4	45	4	45	y	0.08	3	34	3	34	y	0.06	4	58	4	58	y	0.05	2	37	2	37	y	0.00	0	29	0	29	n	0.02	1	42	1	42	n	0.00	0	30	0	30	n	0.05	2	40	2	40	y	0.0155682956266516	3.57294800505248	up	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16821	chr7	138470236	138472119	+	138470236;138471584	138471419;138472119	ES	ENSMUST00000041097.13	known	0.08	4	45.0	4	45;45	y	0.08	3	36.0	3	34;38	y	0.06	4	64.0	4	58;70	y	0.06	2	33.5	2	37;30	y	0.00	0	24.5	0	29;20	n	0.02	1	57.0	1	42;72	n	0.00	0	33.5	0	30;37	n	0.05	2	38.5	2	40;37	y	0.013716490552344	3.99246277830421	up	ENSMUSG00000041769.14	Ppp2r2d	chr7	protein_coding	protein phosphatase 2, regulatory subunit B, delta
known_NIR_16836	chr7	139697269	139706239	+	139697269	139708931	A3SS	ENSMUST00000209908.2	known	0.25	12	36	12	36	y	0.40	4	6	4	6	y	0.39	22	34	22	34	y	0.29	5	12	5	12	y	0.51	31	30	31	30	y	0.47	27	31	27	31	y	0.36	19	34	19	34	y	0.54	37	32	37	32	y	0.0440271584632386	-2.54328178783171	down	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16840	chr7	139705795	139706239	+	139697269	139706239	A5SS	ENSMUST00000210240.2	known	0.37	7	12	7	12	y	0.50	4	4	4	4	n	0.29	9	22	9	22	y	0.50	5	5	5	5	y	0.23	9	31	9	31	y	0.21	7	27	7	27	y	0.27	7	19	7	19	y	0.12	5	37	5	37	y	0.0189752815820049	3.41995542023587	up	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16874	chr7	140487618	140487704	+	140487618	140487753	A3SS	ENSMUST00000210080.2	known	0.36	505	909	505	909	y	0.41	108	157	108	157	y	0.34	442	869	442	869	y	0.39	211	331	211	331	y	0.33	316	636	316	636	y	0.34	473	901	473	901	y	0.31	391	853	391	853	y	0.33	388	798	388	798	y	0.0478268629653196	2.83235277149973	up	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
known_NIR_16940	chr7	141035386;141036562	141036481;141037186	+	141035386	141037186	cassetteExon	ENSMUST00000164016.8	known	0.02	3.5	141	3;4	141	y	0.02	1.5	88	2;1	88	n	0.03	6.0	208	5;7	208	y	0.01	0.5	81	1;0	81	n	0.04	3.5	75	3;4	75	y	0.04	6.0	134	5;7	134	y	0.05	5.0	89	4;6	89	y	0.03	3.5	129	5;2	129	y	0.013399964712331	-3.46410161513775	down	ENSMUSG00000025509.16	Pnpla2	chr7	protein_coding	patatin-like phospholipase domain containing 2
known_NIR_16979	chr7	14161975	14171410	-	14161975	14178795	A5SS	ENSMUST00000209972.2	known	0.91	21	2	21	2	y	1.00	2	0	2	0	n	1.00	20	0	20	0	n	1.00	4	0	4	0	n	0.73	32	12	32	12	y	0.79	53	14	53	14	y	0.79	46	12	46	12	y	0.95	20	1	20	1	n	0.0325700479623911	3.10937167602711	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16980	chr7	14161975	14171410	-	14161975	14180367	A5SS	ENSMUST00000209425.2	known	0.45	21	26	21	26	y	0.67	2	1	2	1	n	0.38	20	32	20	32	y	0.80	4	1	4	1	n	0.09	32	309	32	309	y	0.13	53	354	53	354	y	0.20	46	181	46	181	y	0.14	20	127	20	127	y	0.0179771394033809	4.35909091900678	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16981	chr7	14161975	14171410	-	14161975	14180521	A5SS	ENSMUST00000125941.3	known	0.19	21	90	21	90	y	0.29	2	5	2	5	n	0.14	20	119	20	119	y	0.36	4	7	4	7	y	0.05	32	645	32	645	y	0.06	53	809	53	809	y	0.11	46	377	46	377	y	0.06	20	315	20	315	y	0.0338941982059664	3.41565025531987	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16986	chr7	14161975	14180367	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.04	26	579	26	579	y	0.08	1	12	1	12	n	0.05	32	566	32	566	y	0.02	1	53	1	53	n	0.37	309	535	309	535	y	0.31	354	804	354	804	y	0.26	181	517	181	517	y	0.24	127	397	127	397	y	0.00132465182839255	-7.83480271683283	down	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16987	chr7	14161975	14180521	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.13	90	579	90	579	y	0.29	5	12	5	12	y	0.17	119	566	119	566	y	0.12	7	53	7	53	y	0.55	645	535	645	535	y	0.50	809	804	809	804	y	0.42	377	517	377	517	y	0.44	315	397	315	397	y	0.00112279739731996	-6.12904702146299	down	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16988	chr7	14161975	14180521	-	14161975	14180367	5pMXE	ENSMUST00000209425.2	known	0.78	90	26	90	26	y	0.83	5	1	5	1	n	0.79	119	32	119	32	y	0.88	7	1	7	1	n	0.68	645	309	645	309	y	0.70	809	354	809	354	y	0.68	377	181	377	181	y	0.71	315	127	315	127	y	0.0077314648100424	5.32677627224436	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_17030	chr7	143068374	143074121	-	143068374;143072622	143072587;143074121	ES	ENSMUST00000072727.7	known	0.80	133	32.5	133	30;35	y	0.72	63	24.5	63	23;26	y	0.76	103	32.0	103	30;34	y	0.76	58	18.0	58	17;19	y	0.84	60	11.5	60	12;11	y	0.88	99	14.0	99	12;16	y	0.86	70	11.0	70	7;15	y	0.79	97	25.5	97	24;27	y	0.0178879030523341	-3.26216091127874	down	ENSMUSG00000059119.10	Nap1l4	chr7	protein_coding	nucleosome assembly protein 1-like 4
known_NIR_17051	chr7	144003352;144004825	144004715;144005764	-	144003352	144005764	cassetteExon	ENSMUST00000033407.13	known	0.47	44.0	50	48;40	50	y	0.44	24.0	30	24;24	30	y	0.42	33.0	45	28;38	45	y	0.45	20.5	25	20;21	25	y	0.32	18.0	38	18;18	38	y	0.28	27.0	69	33;21	69	y	0.19	11.0	46	13;9	46	y	0.20	17.0	66	19;15	66	y	0.0052990731612295	5.9604961397101	up	ENSMUSG00000031078.16	Cttn	chr7	protein_coding	cortactin
known_NIR_17077	chr7	16749470	16761618	-	16749470;16756581	16756340;16761618	ES	ENSMUST00000003183.12	known	0.01	1	103.0	1	104;102	n	0.05	2	40.0	2	46;34	y	0.03	4	115.5	4	139;92	y	0.02	1	49.0	1	46;52	n	0.00	0	66.5	0	72;61	n	0.00	0	105.0	0	111;99	n	0.00	0	69.0	0	78;60	n	0.00	0	94.5	0	89;100	n	0.048566856559801	3.22047024073016	up	ENSMUSG00000003099.12	Ppp5c	chr7	protein_coding	protein phosphatase 5, catalytic subunit
known_NIR_17123	chr7	19407538	19415230	-	19407538;19410809	19410647;19415230	ES	ENSMUST00000127648.4	known	0.01	6	858.0	6	1675;41	y	0.00	2	542.0	2	1073;11	y	0.01	5	843.0	5	1644;42	y	0.00	2	596.0	2	1178;14	y	0.02	9	398.0	9	759;37	y	0.02	15	661.5	15	1264;59	y	0.02	10	508.0	10	951;65	y	0.02	12	605.5	12	1164;47	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
known_NIR_17151	chr7	24584279	24584561	+	24584092	24584561	A5SS	ENSMUST00000108430.10	known	0.01	9	741	9	741	y	0.01	3	391	3	391	y	0.01	8	665	8	665	y	0.01	3	365	3	365	y	0.02	11	469	11	469	y	0.04	23	611	23	611	y	0.03	17	628	17	628	y	0.02	13	562	13	562	y	0.0353528470025174	-3.65563077506965	down	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17152	chr7	24584294	24584561	+	24584092	24584561	A5SS	ENSMUST00000108430.10	known	0.02	16	741	16	741	y	0.01	3	391	3	391	y	0.02	17	665	17	665	y	0.02	7	365	7	365	y	0.04	20	469	20	469	y	0.07	47	611	47	611	y	0.06	41	628	41	628	y	0.04	23	562	23	562	y	0.0139678395227001	-4.42718872423573	down	ENSMUSG00000040952.17	Rps19	chr7	protein_coding	ribosomal protein S19
known_NIR_17188	chr7	25415612;25416424	25416279;25417570	-	25415612	25417570	cassetteExon	ENSMUST00000156365.8	known	0.60	3.0	2	6;0	2	n	0.64	3.5	2	7;0	2	n	0.60	3.0	2	6;0	2	n	0.33	1.0	2	2;0	2	n	0.83	5.0	1	10;0	1	n	1.00	4.0	0	7;1	0	n	1.00	4.5	0	8;1	0	n	0.60	4.5	3	8;1	3	n	0.040536965049787	-2.6547405208248	down	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17201	chr7	26872466	26873847	-	26872384	26873847	A3SS	ENSMUST00000093040.13	known	0.02	4	190	4	190	y	0.02	1	65	1	65	n	0.01	1	144	1	144	n	0.01	1	79	1	79	n	0.00	0	86	0	86	n	0.01	1	138	1	138	n	0.01	1	98	1	98	n	0.00	0	123	0	123	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
known_NIR_17203	chr7	26875663	26879594	-	26875663	26878152	5pMXE	ENSMUST00000093040.13	known	0.02	3	119	3	119	y	0.00	0	42	0	42	n	0.00	0	86	0	86	n	0.00	0	62	0	62	n	0.05	3	58	3	58	y	0.02	2	104	2	104	y	0.03	2	58	2	58	y	0.03	2	76	2	76	y	0.015254323057086	-3.4219405926104	down	ENSMUSG00000053291.16	Rab4b	chr7	protein_coding	RAB4B, member RAS oncogene family
known_NIR_17212	chr7	27151975	27158681	+	27147621	27158681	A5SS	ENSMUST00000037399.16	known	0.27	184	508	184	508	y	0.41	171	245	171	245	y	0.30	226	520	226	520	y	0.41	167	237	167	237	y	0.20	95	384	95	384	y	0.20	156	632	156	632	y	0.16	101	547	101	547	y	0.14	66	408	66	408	y	0.0121856772925593	4.36103678165167	up	ENSMUSG00000040466.17	Blvrb	chr7	protein_coding	biliverdin reductase B (flavin reductase (NADPH))
known_NIR_17230	chr7	27674230	27676165	-	27674230	27676177	A5SS	ENSMUST00000205874.2	known	0.86	6	1	6	1	n	0.57	4	3	4	3	n	0.50	2	2	2	2	n	0.50	3	3	3	3	n	0.00	0	4	0	4	n	0.50	5	5	5	5	y	0.25	1	3	1	3	n	0.25	5	15	5	15	y	0.0375167088048757	2.68161665234253	up	ENSMUSG00000063047.10	Zfp780b	chr7	protein_coding	zinc finger protein 780B
known_NIR_17247	chr7	28508284	28512704	+	28508284;28510593	28510097;28512704	ES	ENSMUST00000174548.8	known	0.17	5	24.5	5	4;45	y	0.06	1	15.5	1	0;31	n	0.10	2	17.5	2	5;30	y	0.18	3	14.0	3	0;28	n	0.26	7	19.5	7	2;37	y	0.30	14	32.5	14	2;63	y	0.21	5	18.5	5	3;34	y	0.24	8	26.0	8	2;50	y	0.013971697494753	-3.64017628587218	down	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17248	chr7	28508284	28512704	+	28510593	28512704	5pMXE	ENSMUST00000038572.15	known	0.10	5	45	5	45	y	0.03	1	31	1	31	n	0.06	2	30	2	30	y	0.10	3	28	3	28	y	0.16	7	37	7	37	y	0.18	14	63	14	63	y	0.13	5	34	5	34	y	0.14	8	50	8	50	y	0.0103160885020761	-3.93892771133865	down	ENSMUSG00000015165.17	Hnrnpl	chr7	protein_coding	heterogeneous nuclear ribonucleoprotein L
known_NIR_17268	chr7	28937988	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.15	4	23	4	23	y	0.00	0	16	0	16	n	0.10	4	35	4	35	y	0.23	3	10	3	10	y	0.35	7	13	7	13	y	0.19	6	26	6	26	y	0.48	12	13	12	13	y	0.26	11	31	11	31	y	0.0470428996638766	-2.53320198552449	down	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17270	chr7	28937988	28943495	+	28938036	28943495	A5SS	ENSMUST00000108237.2	known	0.04	4	97	4	97	y	0.00	0	47	0	47	n	0.08	4	46	4	46	y	0.06	3	45	3	45	y	0.09	7	67	7	67	y	0.08	6	67	6	67	y	0.17	12	57	12	57	y	0.11	11	88	11	88	y	0.0442253782828032	-2.55506520639987	down	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17350	chr7	30654227;30655425	30655225;30655574	-	30654227;30654865	30654531;30655574	MXE	ENSMUST00000167285.8	known	0.30	80.5	186.0	3;158	357;15	y	0.31	32.5	72.0	0;65	136;8	n	0.27	61.0	169.0	0;122	326;12	n	0.34	39.5	77.5	0;79	154;1	n	0.21	29.5	114.0	1;58	223;5	n	0.28	66.0	173.5	0;132	325;22	n	0.24	44.0	136.5	3;85	262;11	y	0.25	50.0	149.0	0;100	287;11	n	0.0259682962965683	2.93938769133981	up	ENSMUSG00000058239.14	Usf2	chr7	protein_coding	upstream transcription factor 2
known_NIR_17373	chr7	30753795	30754190	-	30753795	30754743	A5SS	ENSMUST00000206328.2	known	0.71	106	43	106	43	y	0.75	38	13	38	13	y	0.65	94	50	94	50	y	0.74	39	14	39	14	y	0.59	48	33	48	33	y	0.53	62	56	62	56	y	0.56	48	37	48	37	y	0.53	57	51	57	51	y	0.00173533764762951	5.99414919412285	up	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17374	chr7	30753795	30754190	-	30753795	30754976	A5SS	ENSMUST00000205807.2	known	0.13	106	686	106	686	y	0.13	38	258	38	258	y	0.12	94	720	94	720	y	0.09	39	375	39	375	y	0.07	48	598	48	598	y	0.07	62	890	62	890	y	0.05	48	844	48	844	y	0.07	57	755	57	755	y	0.00572338329910856	4.90454334821759	up	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17381	chr7	30753859	30754190	-	30753859	30754976	A5SS	ENSMUST00000039909.13	known	0.12	8	60	8	60	y	0.10	3	28	3	28	y	0.17	12	59	12	59	y	0.12	4	28	4	28	y	0.03	2	57	2	57	y	0.07	5	62	5	62	y	0.11	8	63	8	63	y	0.06	3	47	3	47	y	0.0361955586979174	2.69453227883443	up	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17410	chr7	34905600	34912565	-	34905600;34910922	34910860;34912565	ES	ENSMUST00000122409.8	known	0.06	2	30.5	2	39;22	y	0.15	2	11.0	2	10;12	y	0.10	2	18.5	2	22;15	y	0.12	2	14.5	2	20;9	y	0.00	0	19.5	0	24;15	n	0.00	0	31.0	0	36;26	n	0.00	0	18.0	0	25;11	n	0.00	0	14.0	0	18;10	n	0.0107315782613911	5.69548913537969	up	ENSMUSG00000001802.17	Lrp3	chr7	protein_coding	low density lipoprotein receptor-related protein 3
known_NIR_17498	chr7	44117583	44117730	+	44117614	44117730	A5SS	ENSMUST00000118493.8	known	0.20	4	16	4	16	y	0.33	2	4	2	4	n	0.38	8	13	8	13	y	0.25	2	6	2	6	n	0.12	3	22	3	22	y	0.09	1	10	1	10	n	0.12	3	22	3	22	y	0.25	6	18	6	18	y	0.0362376150999371	2.69645941407579	up	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17519	chr7	44118393;44119596	44119407;44119836	+	44118393	44119836	cassetteExon	ENSMUST00000035844.11	known	0.21	27.0	102	0;54	102	n	0.09	4.5	45	0;9	45	n	0.17	22.0	110	0;44	110	n	0.12	6.0	42	0;12	42	n	0.25	14.0	41	0;28	41	n	0.30	28.5	68	5;52	68	y	0.28	30.0	77	2;58	77	y	0.21	21.0	77	0;42	77	n	0.0163627715602537	-3.4081782195611	down	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17542	chr7	4434633;4438097	4437993;4445593	-	4434633	4445593	cassetteExon	ENSMUST00000119485.8	known	0.88	22.0	3	20;24	3	y	0.82	13.5	3	16;11	3	y	0.90	18.0	2	17;19	2	y	0.90	18.5	2	11;26	2	y	1.00	6.0	0	6;6	0	n	1.00	10.5	0	10;11	0	n	0.89	8.5	1	7;10	1	n	0.94	16.0	1	15;17	1	n	0.0489362521676219	-2.52850674898204	down	ENSMUSG00000008435.16	Rdh13	chr7	protein_coding	retinol dehydrogenase 13 (all-trans and 9-cis)
known_NIR_17558	chr7	44494752	44495299	-	44494792	44495299	A3SS	ENSMUST00000047085.16	known	0.04	3	70	3	70	y	0.00	0	22	0	22	n	0.00	0	69	0	69	n	0.00	0	51	0	51	n	0.05	3	61	3	61	y	0.03	2	73	2	73	y	0.08	4	44	4	44	y	0.06	5	85	5	85	y	0.0206890176697124	-3.11769145362398	down	ENSMUSG00000038520.16	Tbc1d17	chr7	protein_coding	TBC1 domain family, member 17
known_NIR_17566	chr7	44499720	44501995	+	44498772	44501995	A5SS	ENSMUST00000107885.8	known	0.10	3	28	3	28	y	0.00	0	12	0	12	n	0.00	0	29	0	29	n	0.08	1	11	1	11	n	0.20	3	12	3	12	y	0.19	5	21	5	21	y	0.27	6	16	6	16	y	0.13	3	20	3	20	y	0.00793180450977392	-3.91853072989806	down	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17567	chr7	44499720	44501995	+	44499113	44501995	A5SS	ENSMUST00000150335.2	known	0.27	3	8	3	8	y	0.00	0	11	0	11	n	0.00	0	4	0	4	n	0.20	1	4	1	4	n	0.43	3	4	3	4	n	0.45	5	6	5	6	y	0.60	6	4	6	4	y	0.25	3	9	3	9	y	0.0196303363480215	-3.15856606539151	down	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17568	chr7	44499720	44501995	+	44499430	44501995	A5SS	ENSMUST00000152091.8	known	0.17	3	15	3	15	y	0.00	0	12	0	12	n	0.00	0	26	0	26	n	0.11	1	8	1	8	n	0.30	3	7	3	7	y	0.28	5	13	5	13	y	0.35	6	11	6	11	y	0.19	3	13	3	13	y	0.00883722846366908	-3.89960210171809	down	ENSMUSG00000011096.18	Akt1s1	chr7	protein_coding	AKT1 substrate 1 (proline-rich)
known_NIR_17584	chr7	44509369	44509784	+	44509369;44509608	44509501;44509784	ES	ENSMUST00000107876.8	known	0.08	7	82.0	7	82;82	y	0.05	2	37.0	2	37;37	y	0.12	10	74.5	10	82;67	y	0.05	2	37.0	2	32;42	y	0.20	11	44.0	11	52;36	y	0.14	11	68.5	11	79;58	y	0.13	8	54.0	8	56;52	y	0.13	10	66.5	10	62;71	y	0.0192256919124692	-3.17405527136369	down	ENSMUSG00000002963.18	Pnkp	chr7	protein_coding	polynucleotide kinase 3'- phosphatase
known_NIR_17613	chr7	44636794	44640801	+	44636794	44641447	A3SS	ENSMUST00000152595.2	known	0.83	5	1	5	1	n	0.50	1	1	1	1	n	0.78	7	2	7	2	n	0.40	2	3	2	3	n	0.88	7	1	7	1	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	0.92	11	1	11	1	n	0.049633253058748	-2.95351012971318	down	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
known_NIR_17697	chr7	45030242	45031249	-	45030242	45033228	A5SS	ENSMUST00000074575.11	known	0.04	7	181	7	181	y	0.03	3	101	3	101	y	0.04	5	134	5	134	y	0.02	2	91	2	91	y	0.04	4	97	4	97	y	0.07	8	101	8	101	y	0.05	6	104	6	104	y	0.05	8	144	8	144	y	0.0474548010379003	-2.5298221281347	down	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17699	chr7	45030242	45033228	-	45030242;45032608	45031249;45033228	ES	ENSMUST00000211290.2	known	0.80	181	44.5	181	7;82	y	0.77	101	30.0	101	3;57	y	0.83	134	27.0	134	5;49	y	0.81	91	22.0	91	2;42	y	0.75	97	33.0	97	4;62	y	0.68	101	48.5	101	8;89	y	0.76	104	32.0	104	6;58	y	0.75	144	49.0	144	8;90	y	0.0273621224812905	3.02500043224175	up	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17700	chr7	45030242	45033228	-	45032608	45033228	A3SS	ENSMUST00000211366.2	known	0.69	181	82	181	82	y	0.64	101	57	101	57	y	0.73	134	49	134	49	y	0.68	91	42	91	42	y	0.61	97	62	97	62	y	0.53	101	89	101	89	y	0.64	104	58	104	58	y	0.62	144	90	144	90	y	0.0336763812793066	2.79478278419108	up	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17701	chr7	45030242;45032608	45032549;45033228	-	45030242	45033228	cassetteExon	ENSMUST00000074575.11	known	0.20	45.5	181	9;82	181	y	0.23	30.0	101	3;57	101	y	0.16	25.0	134	1;49	134	n	0.19	21.0	91	0;42	91	n	0.25	31.5	97	1;62	97	n	0.31	46.0	101	3;89	101	y	0.23	31.0	104	4;58	104	y	0.25	47.5	144	5;90	144	y	0.0289822246347439	-2.88296295672283	down	ENSMUSG00000063511.12	Snrnp70	chr7	protein_coding	small nuclear ribonucleoprotein 70 (U1)
known_NIR_17720	chr7	45159271	45159656	-	45159271	45159747	A5SS	ENSMUST00000211765.2	known	0.01	1	179	1	179	n	0.00	0	67	0	67	n	0.02	2	123	2	123	y	0.00	0	85	0	85	n	0.02	2	95	2	95	y	0.04	7	152	7	152	y	0.03	3	99	3	99	y	0.02	3	135	3	135	y	0.0254739283431625	-2.95419578350399	down	ENSMUSG00000030824.18	Nucb1	chr7	protein_coding	nucleobindin 1
known_NIR_17863	chr7	55594457	55594707	-	55594457	55611948	A5SS	ENSMUST00000117812.8	known	0.14	2	12	2	12	y	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.00	0	6	0	6	n	0.38	5	8	5	8	y	0.17	2	10	2	10	y	0.33	5	10	5	10	y	0.25	3	9	3	9	y	0.0253241363885576	-3.00119094883612	down	ENSMUSG00000030452.17	Nipa2	chr7	protein_coding	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
known_NIR_17922	chr7	65719274;65719946	65719867;65720338	+	65719274	65720338	cassetteExon	ENSMUST00000206150.2	known	0.85	64.0	11	55;73	11	y	0.93	25.0	2	31;19	2	y	0.83	71.0	15	85;57	15	y	0.75	24.0	8	25;23	8	y	0.72	46.5	18	52;41	18	y	0.66	51.5	26	55;48	26	y	0.76	44.5	14	36;53	14	y	0.71	59.0	24	60;58	24	y	0.032091848671309	3.0139373572589	up	ENSMUSG00000030512.14	Snrpa1	chr7	protein_coding	small nuclear ribonucleoprotein polypeptide A'
known_NIR_17959	chr7	67919982	67924906	-	67919982	67924654	5pMXE	ENSMUST00000135564.8	known	0.23	16	55	16	55	y	0.06	3	45	3	45	y	0.12	11	82	11	82	y	0.16	5	27	5	27	y	0.23	23	77	23	77	y	0.32	40	85	40	85	y	0.25	28	83	28	83	y	0.30	34	78	34	78	y	0.0249913575747421	-3.19990127429724	down	ENSMUSG00000086628.8	Gm16157	chr7	lncRNA	predicted gene 16157
known_NIR_17984	chr7	73169456	73187057	-	73169456	73190520	A5SS	ENSMUST00000169922.9	known	0.20	1	4	1	4	n	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.38	3	5	3	5	n	0.60	3	2	3	2	n	0.36	4	7	4	7	y	-	-	-	-	-	-	0.43	3	4	3	4	n	0.0405762576138778	-2.74628322136325	down	ENSMUSG00000078671.12	Chd2	chr7	protein_coding	chromodomain helicase DNA binding protein 2
known_NIR_18004	chr7	78545762	78552092	+	78545762	78551978	A3SS	ENSMUST00000107425.8	known	0.43	6	8	6	8	y	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.33	3	6	3	6	n	0.65	11	6	11	6	y	0.46	6	7	6	7	y	0.45	5	6	5	6	y	0.56	5	4	5	4	n	0.0188956495501467	-3.20942817095964	down	ENSMUSG00000030609.19	Aen	chr7	protein_coding	apoptosis enhancing nuclease
known_NIR_18035	chr7	79988907	79989062	-	79988764	79989062	A3SS	ENSMUST00000154428.9	known	0.15	4	22	4	22	y	0.12	1	7	1	7	n	0.26	5	14	5	14	y	0.05	1	20	1	20	n	0.20	2	8	2	8	y	0.28	8	21	8	21	y	0.43	6	8	6	8	y	0.33	4	8	4	8	y	0.0445321158557757	-2.53846153846154	down	ENSMUSG00000030533.17	Unc45a	chr7	protein_coding	unc-45 myosin chaperone A
known_NIR_18114	chr7	97199948	97214358	-	97199948;97207433	97207338;97214358	ES	ENSMUST00000178078.8	known	0.30	31	71.5	31	65;78	y	0.28	7	18.0	7	13;23	y	0.29	35	85.5	35	83;88	y	0.31	8	17.5	8	20;15	y	0.25	21	63.0	21	62;64	y	0.26	36	100.0	36	98;102	y	0.23	22	73.5	22	76;71	y	0.25	28	83.0	28	83;83	y	0.0018876780862459	5.26965186413968	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18115	chr7	97199948	97224795	-	97199948	97207338	A5SS&ES	ENSMUST00000146605.8	known	0.18	14	65	14	65	y	0.24	4	13	4	13	y	0.13	12	83	12	83	y	0.17	4	20	4	20	y	0.15	11	62	11	62	y	0.08	9	98	9	98	y	0.07	6	76	6	76	y	0.12	11	83	11	83	y	0.0444983045815337	2.55996055794858	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18125	chr7	97199948;97224898	97224795;97228573	-	97199948;97214507	97207338;97228573	MXE	ENSMUST00000136757.8	known	0.52	50.5	47.0	14;87	65;29	y	0.60	18.0	12.0	4;32	13;11	y	0.48	50.5	55.0	12;89	83;27	y	0.60	24.5	16.5	4;45	20;13	y	0.44	36.0	45.5	11;61	62;29	y	0.45	57.5	71.5	9;106	98;45	y	0.48	57.0	61.0	6;108	76;46	y	0.42	42.0	57.0	11;73	83;31	y	0.0342539489960382	3.15384615384616	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18129	chr7	97214507	97218894	-	97214507	97228573	A5SS	ENSMUST00000136757.8	known	0.36	16	29	16	29	y	0.27	4	11	4	11	y	0.29	11	27	11	27	y	0.48	12	13	12	13	y	0.12	4	29	4	29	y	0.31	20	45	20	45	y	0.15	8	46	8	46	y	0.18	7	31	7	31	y	0.04529503852031	2.5298221281347	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18132	chr7	97214507;97224898	97224795;97228573	-	97214507	97228573	cassetteExon	ENSMUST00000136757.8	known	0.71	72.0	29	57;87	29	y	0.67	22.5	11	13;32	11	y	0.74	76.0	27	63;89	27	y	0.73	34.5	13	24;45	13	y	0.65	53.5	29	46;61	29	y	0.67	91.0	45	76;106	45	y	0.64	81.0	46	54;108	46	y	0.68	65.0	31	57;73	31	y	0.0340807541973951	2.92155504328906	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
known_NIR_18153	chr7	98240091	98243959	-	98240091;98243017	98242538;98243959	ES	ENSMUST00000205276.2	known	0.14	2	12.5	2	20;5	y	0.00	0	4.5	0	7;2	n	0.18	4	18.0	4	19;17	y	0.20	2	8.0	2	12;4	y	0.38	4	6.5	4	13;0	n	0.24	3	9.5	3	14;5	y	0.24	4	12.5	4	19;6	y	0.24	2	6.5	2	9;4	y	0.0464463420000859	-2.54021365676096	down	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18244	chr8	106427949	106428806	+	106427918	106428806	A5SS	ENSMUST00000212634.2	known	0.43	6	8	6	8	y	0.57	4	3	4	3	n	0.42	8	11	8	11	y	0.44	4	5	4	5	n	0.33	3	6	3	6	n	0.24	4	13	4	13	y	0.33	4	8	4	8	y	0.00	0	11	0	11	n	0.0461882428617394	2.80578640627382	up	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18252	chr8	106615150	106615228	+	106615150	106615231	A3SS	ENSMUST00000040254.16	known	0.35	7	13	7	13	y	0.33	5	10	5	10	y	0.33	7	14	7	14	y	0.27	3	8	3	8	y	0.64	7	4	7	4	y	0.42	8	11	8	11	y	0.47	9	10	9	10	y	0.44	7	9	7	9	y	0.035187023427064	-3.24668437172357	down	ENSMUSG00000036270.17	Edc4	chr8	protein_coding	enhancer of mRNA decapping 4
known_NIR_18260	chr8	106860518	106860592	-	106860521	106860592	A3SS	ENSMUST00000115979.9	known	0.17	44	214	44	214	y	0.17	14	67	14	67	y	0.14	22	135	22	135	y	0.12	12	88	12	88	y	0.19	26	108	26	108	y	0.18	29	132	29	132	y	0.20	25	103	25	103	y	0.20	36	148	36	148	y	0.0331510872482323	-3.23199367767483	down	ENSMUSG00000084128.11	Esrp2	chr8	protein_coding	epithelial splicing regulatory protein 2
known_NIR_18314	chr8	112264196	112335925	+	112333480	112335925	5pMXE	ENSMUST00000173922.2	known	0.86	183	31	183	31	y	0.89	117	14	117	14	y	0.88	152	21	152	21	y	0.94	144	9	144	9	y	0.86	90	15	90	15	y	0.84	127	24	127	24	y	0.78	90	25	90	25	y	0.77	151	44	151	44	y	0.0307024593540303	2.86599088332735	up	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18317	chr8	112264196;112333480	112333379;112335925	+	112264196	112335925	cassetteExon	ENSMUST00000172856.8	known	0.12	25.5	183	20;31	183	y	0.09	11.5	117	9;14	117	y	0.10	16.5	152	12;21	152	y	0.06	9.5	144	10;9	144	y	0.13	13.5	90	12;15	90	y	0.14	20.5	127	17;24	127	y	0.16	17.5	90	10;25	90	y	0.18	34.0	151	24;44	151	y	0.0117704499042859	-3.59103360998748	down	ENSMUSG00000033545.15	Znrf1	chr8	protein_coding	zinc and ring finger 1
known_NIR_18346	chr8	11560347	11562895	+	11560347;11561997	11561877;11562895	ES	ENSMUST00000177955.8	known	0.01	3	238.0	3	226;250	y	0.00	0	100.5	0	117;84	n	0.02	6	239.5	6	246;233	y	0.00	0	108.0	0	108;108	n	0.03	6	178.5	6	180;177	y	0.04	10	261.5	10	265;258	y	0.02	5	224.0	5	223;225	y	0.02	4	203.0	4	173;233	y	0.0254739283431625	-2.95419578350399	down	ENSMUSG00000031505.12	Naxd	chr8	protein_coding	NAD(P)HX dehydratase
known_NIR_18431	chr8	123034146	123034231	+	123032219	123034231	A5SS	ENSMUST00000054052.15	known	0.17	21	101	21	101	y	0.24	11	34	11	34	y	0.19	17	72	17	72	y	0.26	19	53	19	53	y	0.08	6	73	6	73	y	0.15	21	117	21	117	y	0.07	4	55	4	55	y	0.09	10	105	10	105	y	0.00568111104907259	4.24937886148633	up	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
known_NIR_18449	chr8	123302274;123302991	123302620;123303254	-	123302274	123303254	cassetteExon	ENSMUST00000006764.9	known	0.01	2.5	204	2;3	204	y	0.02	1.5	85	1;2	85	n	0.02	5.0	231	4;6	231	y	0.01	0.5	95	0;1	95	n	0.00	0.0	112	0;0	112	n	0.01	1.5	231	0;3	231	n	0.00	0.0	150	0;0	150	n	0.00	0.0	200	0;0	200	n	0.017467049804449	3.27326835353989	up	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18451	chr8	123302991	123303254	-	123302970	123303254	A3SS	ENSMUST00000212093.2	known	0.20	3	12	3	12	y	0.50	2	2	2	2	n	0.55	6	5	6	5	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.30	3	7	3	7	y	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.0270135865918262	2.91310621936514	up	ENSMUSG00000006589.9	Aprt	chr8	protein_coding	adenine phosphoribosyl transferase
known_NIR_18512	chr8	125452114	125455108	+	125452114	125455068	A3SS	ENSMUST00000034463.4	known	0.12	2	14	2	14	y	0.11	1	8	1	8	n	0.18	2	9	2	9	y	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.0123503994688277	3.81887614736348	up	ENSMUSG00000031982.6	Arv1	chr8	protein_coding	ARV1 homolog, fatty acid homeostasis modulator
known_NIR_18518	chr8	126461088	126462807	+	126459970	126462807	A5SS	ENSMUST00000146055.8	known	0.76	26	8	26	8	y	0.86	12	2	12	2	y	0.90	35	4	35	4	y	0.75	15	5	15	5	y	0.91	32	3	32	3	y	1.00	35	0	35	0	n	1.00	40	0	40	0	n	1.00	21	0	21	0	n	0.0144001938907006	-3.69094295092221	down	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18544	chr8	128174287	128186755	+	128153234	128186755	A5SS	ENSMUST00000162309.8	known	0.06	2	34	2	34	y	0.00	0	10	0	10	n	0.08	2	24	2	24	y	0.00	0	9	0	9	n	0.18	2	9	2	9	y	0.25	3	9	3	9	y	0.30	3	7	3	7	y	0.07	2	26	2	26	y	0.0377034278487186	-3.05958028471629	down	ENSMUSG00000025812.19	Pard3	chr8	protein_coding	par-3 family cell polarity regulator
known_NIR_18571	chr8	13227142	13229323	-	13228947	13229323	3pMXE	ENSMUST00000211128.2	known	0.96	89	4	89	4	y	1.00	31	0	31	0	n	0.99	68	1	68	1	n	1.00	32	0	32	0	n	0.90	62	7	62	7	y	0.95	116	6	116	6	y	0.94	105	7	105	7	y	0.93	115	9	115	9	y	0.00734125127992568	4.00378608698106	up	ENSMUSG00000038515.11	Grtp1	chr8	protein_coding	GH regulated TBC protein 1
known_NIR_18594	chr8	14939118;14940623	14940492;14944572	+	14939118	14944572	cassetteExon	ENSMUST00000027554.8	known	0.02	1.0	40	1;1	40	n	0.02	0.5	26	1;0	26	n	0.03	1.0	32	1;1	32	n	0.00	0.0	16	0;0	16	n	0.07	1.5	20	3;0	20	n	0.07	2.0	28	1;3	28	n	0.08	2.0	22	2;2	22	y	0.06	1.0	16	0;2	16	n	0.000814495615579615	-7	down	ENSMUSG00000026317.8	Cln8	chr8	protein_coding	CLN8 transmembrane ER and ERGIC protein
known_NIR_18692	chr8	3565556	3566507	+	3565556	3566510	A3SS	ENSMUST00000111070.4	known	0.60	6	4	6	4	y	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.60	6	4	6	4	y	1.00	3	0	3	0	n	1.00	7	0	7	0	n	0.67	4	2	4	2	n	0.73	11	4	11	4	y	0.0466337838128569	-3.02307340461122	down	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18735	chr8	41714218	41720224	+	41714218;41714513	41714397;41720224	ES	ENSMUST00000211090.2	known	0.15	3	17.5	3	17;18	y	0.00	0	7.0	0	8;6	n	0.00	0	11.0	0	8;14	n	0.15	1	5.5	1	6;5	n	0.57	4	3.0	4	4;2	y	0.18	2	9.0	2	9;9	y	0.46	3	3.5	3	4;3	y	0.33	3	6.0	3	4;8	y	0.0258435356476311	-3.27680182000648	down	ENSMUSG00000031592.11	Pcm1	chr8	protein_coding	pericentriolar material 1
known_NIR_18762	chr8	46228740;46235997	46235839;46243013	+	46228740	46243013	cassetteExon	ENSMUST00000138049.9	known	0.21	14.5	54	27;2	54	y	0.27	11.0	30	22;0	30	n	0.35	16.5	30	30;3	30	y	0.32	17.5	38	31;4	38	y	0.17	5.0	25	10;0	25	n	0.15	7.5	44	14;1	44	n	0.16	4.0	21	8;0	21	n	0.21	9.0	33	17;1	33	n	0.0254145245044023	3.44784576938096	up	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18763	chr8	46228740;46235997	46235839;46243013	+	46228740;46238362	46238306;46243013	MXE	ENSMUST00000171337.10	known	0.36	14.5	25.5	27;2	3;48	y	0.44	11.0	14.0	22;0	0;28	n	0.53	16.5	14.5	30;3	1;28	n	0.56	17.5	14.0	31;4	0;28	n	0.24	5.0	16.0	10;0	4;28	n	0.29	7.5	18.0	14;1	1;35	n	0.20	4.0	16.0	8;0	0;32	n	0.34	9.0	17.5	17;1	0;35	n	0.0121161704583242	3.75583462179762	up	ENSMUSG00000031626.19	Sorbs2	chr8	protein_coding	sorbin and SH3 domain containing 2
known_NIR_18829	chr8	61943094;61943727	61943620;61944579	+	61943094	61944579	cassetteExon	ENSMUST00000034058.14	known	0.03	3.0	108	4;2	108	y	0.03	2.5	72	3;2	72	y	0.05	4.5	88	5;4	88	y	0.05	3.0	62	1;5	62	n	0.02	1.0	63	1;1	63	n	0.00	0.5	123	0;1	123	n	0.02	2.5	98	2;3	98	y	0.00	0.0	80	0;0	80	n	0.010401720935464	3.67423461417477	up	ENSMUSG00000031641.15	Cbr4	chr8	protein_coding	carbonyl reductase 4
known_NIR_18909	chr8	70962284	70962988	-	70962284	70962768	A5SS	ENSMUST00000129909.8	known	0.90	2115	241	2115	241	y	0.91	1185	111	1185	111	y	0.90	2097	222	2097	222	y	0.91	1058	104	1058	104	y	0.89	1374	167	1374	167	y	0.89	2106	267	2106	267	y	0.89	1867	242	1867	242	y	0.88	1852	243	1852	243	y	0.00395758466635646	4.58257569495585	up	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18923	chr8	70972711	70980295	-	70972711	70975713	5pMXE	ENSMUST00000121623.8	known	0.14	11	69	11	69	y	0.18	6	27	6	27	y	0.15	12	68	12	68	y	0.19	8	35	8	35	y	0.14	8	51	8	51	y	0.13	10	67	10	67	y	0.08	6	66	6	66	y	0.07	6	80	6	80	y	0.0345917700571266	2.82842712474619	up	ENSMUSG00000055553.17	Kxd1	chr8	protein_coding	KxDL motif containing 1
known_NIR_18950	chr8	71212113;71212899	71212739;71213014	-	71212113	71213014	cassetteExon	ENSMUST00000038626.10	known	0.06	4.5	65	8;1	65	n	0.08	2.5	30	2;3	30	y	0.03	2.0	74	1;3	74	n	0.07	2.5	32	2;3	32	y	0.11	6.0	50	6;6	50	y	0.10	9.5	84	7;12	84	y	0.11	6.5	53	5;8	53	y	0.09	5.5	58	5;6	58	y	0.0215663395477411	-3.59726264087885	down	ENSMUSG00000035559.10	Mpv17l2	chr8	protein_coding	MPV17 mitochondrial membrane protein-like 2
known_NIR_18953	chr8	71232581	71232917	-	71232581	71232839	A5SS	ENSMUST00000212140.2	known	0.56	22	17	22	17	y	0.62	8	5	8	5	y	0.61	20	13	20	13	y	0.47	8	9	8	9	y	0.82	14	3	14	3	y	0.82	23	5	23	5	y	0.73	19	7	19	7	y	0.70	21	9	21	9	y	0.00475260531922505	-4.38639592469845	down	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_18954	chr8	71241928;71242347	71242327;71242492	-	71241928	71242492	cassetteExon	ENSMUST00000166004.3	known	0.11	2.5	21	2;3	21	y	0.24	3.5	11	4;3	11	y	0.17	2.5	12	3;2	12	y	0.19	2.5	11	3;2	11	y	0.00	0.0	11	0;0	11	n	0.09	3.0	32	3;3	32	y	0.15	3.0	17	4;2	17	y	0.00	0.0	17	0;0	17	n	0.0451998127057428	2.58075599535053	up	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_19044	chr8	80008283	80010838	-	80008283	80021543	A5SS	ENSMUST00000048718.4	known	0.73	33	12	33	12	y	0.70	7	3	7	3	y	0.79	23	6	23	6	y	0.78	14	4	14	4	y	0.89	17	2	17	2	y	0.76	37	12	37	12	y	0.84	36	7	36	7	y	0.90	45	5	45	5	y	0.0499400002544366	-2.54047852134149	down	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
known_NIR_19065	chr8	84662457	84681732	-	84662457;84662804	84662697;84681732	ES	ENSMUST00000098595.3	known	0.72	9	3.5	9	5;2	y	-	-	-	-	-	-	1.00	4	0.0	4	0;0	n	1.00	2	0.0	2	0;0	n	0.50	4	4.0	4	5;3	y	0.38	3	5.0	3	5;5	y	0.71	5	2.0	5	4;0	n	0.67	5	2.5	5	2;3	y	0.0435688935001445	2.82899937762021	up	ENSMUSG00000074219.4	Gm10644	chr8	lncRNA	predicted gene 10644
known_NIR_19068	chr8	84977771	84980492	-	84978340	84980492	A3SS	ENSMUST00000126435.8	known	0.03	3	96	3	96	y	0.00	0	60	0	60	n	0.03	3	88	3	88	y	0.00	0	53	0	53	n	0.06	4	65	4	65	y	0.05	6	127	6	127	y	0.07	8	99	8	99	y	0.04	3	76	3	76	y	0.0115740023013006	-3.70328039909021	down	ENSMUSG00000004996.10	Mri1	chr8	protein_coding	methylthioribose-1-phosphate isomerase 1
known_NIR_19099	chr8	85684482	85684595	-	85684493	85684595	A3SS	ENSMUST00000109738.10	known	0.04	4	86	4	86	y	0.03	1	38	1	38	n	0.04	4	95	4	95	y	0.05	2	35	2	35	y	0.00	0	72	0	72	n	0.02	2	104	2	104	y	0.00	0	98	0	98	n	0.02	2	99	2	99	y	0.00686878756026517	4.24264068711928	up	ENSMUSG00000052926.17	Rnaseh2a	chr8	protein_coding	ribonuclease H2, large subunit
known_NIR_19157	chr8	94002074;94003257	94003184;94006277	-	94002074	94006277	cassetteExon	ENSMUST00000034178.9	known	0.01	1.5	127	1;2	127	n	0.00	0.0	3	0;0	3	n	0.02	10.5	470	13;8	470	y	0.00	0.0	5	0;0	5	n	0.03	17.5	611	18;17	611	y	0.02	27.5	1082	29;26	1082	y	0.04	27.0	732	33;21	732	y	0.02	15.5	912	16;15	912	y	0.0254739283431625	-2.95419578350399	down	ENSMUSG00000031725.9	Ces1f	chr8	protein_coding	carboxylesterase 1F
known_NIR_19259	chr9	103233225	103233479	-	103232512	103233479	A3SS	ENSMUST00000035484.11	known	0.68	27	13	27	13	y	0.72	13	5	13	5	y	0.80	36	9	36	9	y	0.62	10	6	10	6	y	0.62	13	8	13	8	y	0.61	31	20	31	20	y	0.57	8	6	8	6	y	0.54	15	13	15	13	y	0.0417269923073559	2.85498570858532	up	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19263	chr9	103241250	103241662	-	103241250	103242253	A5SS	ENSMUST00000035484.11	known	0.10	21	196	21	196	y	0.05	5	96	5	96	y	0.09	12	127	12	127	y	0.08	10	119	10	119	y	0.11	10	83	10	83	y	0.17	34	169	34	169	y	0.13	15	97	15	97	y	0.11	18	146	18	146	y	0.0330769882889104	-2.80975743474508	down	ENSMUSG00000032803.16	Cdv3	chr9	protein_coding	carnitine deficiency-associated gene expressed in ventricle 3
known_NIR_19265	chr9	103926878	103927034	-	103926800	103927034	A3SS	ENSMUST00000035166.12	known	0.01	2	164	2	164	y	0.02	3	193	3	193	y	0.02	2	119	2	119	y	0.02	3	142	3	142	y	0.05	3	60	3	60	y	0.03	4	120	4	120	y	0.03	3	101	3	101	y	0.03	3	97	3	97	y	0.0307597787889486	-3.13049516849971	down	ENSMUSG00000032557.14	Uba5	chr9	protein_coding	ubiquitin-like modifier activating enzyme 5
known_NIR_19282	chr9	106035103	106035199	-	106035103	106035240	A5SS	ENSMUST00000112543.9	known	0.57	141	107	141	107	y	0.54	99	86	99	86	y	0.50	101	103	101	103	y	0.53	94	82	94	82	y	0.51	50	48	50	48	y	0.45	83	103	83	103	y	0.46	68	80	68	80	y	0.47	71	80	71	80	y	0.018800778716675	3.2009219983224	up	ENSMUSG00000020258.17	Glyctk	chr9	protein_coding	glycerate kinase
known_NIR_19315	chr9	106325908	106327203	+	106325493	106327203	A5SS	ENSMUST00000190167.7	known	0.98	288	5	288	5	y	0.97	64	2	64	2	y	0.98	315	7	315	7	y	0.97	133	4	133	4	y	1.00	262	0	262	0	n	0.99	365	5	365	5	y	0.98	287	6	287	6	y	0.99	413	5	413	5	y	0.0273393097919095	-3	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19316	chr9	106325908	106327203	+	106325527	106327203	A5SS	ENSMUST00000187106.7	known	0.88	288	41	288	41	y	0.89	64	8	64	8	y	0.85	315	55	315	55	y	0.90	133	15	133	15	y	0.93	262	21	262	21	y	0.91	365	37	365	37	y	0.90	287	31	287	31	y	0.93	413	30	413	30	y	0.0331203230481182	-2.85175912736015	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19319	chr9	106326001	106327203	+	106325493	106327203	A5SS	ENSMUST00000190167.7	known	0.58	7	5	7	5	y	0.00	0	2	0	2	n	0.53	8	7	8	7	y	0.50	4	4	4	4	n	1.00	16	0	16	0	n	0.74	14	5	14	5	y	0.74	17	6	17	6	y	0.81	21	5	21	5	y	0.0449568333502058	-2.82869439874865	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19320	chr9	106326001	106327203	+	106325527	106327203	A5SS	ENSMUST00000187106.7	known	0.15	7	41	7	41	y	0.00	0	8	0	8	n	0.13	8	55	8	55	y	0.21	4	15	4	15	y	0.43	16	21	16	21	y	0.27	14	37	14	37	y	0.35	17	31	17	31	y	0.41	21	30	21	30	y	0.00586922275228339	-4.25509542490508	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19321	chr9	106326001	106327203	+	106325908	106327203	A5SS	ENSMUST00000048527.15	known	0.02	7	288	7	288	y	0.00	0	64	0	64	n	0.02	8	315	8	315	y	0.03	4	133	4	133	y	0.06	16	262	16	262	y	0.04	14	365	14	365	y	0.06	17	287	17	287	y	0.05	21	413	21	413	y	0.00523040489544888	-4.42718872423573	down	ENSMUSG00000042073.16	Abhd14b	chr9	protein_coding	abhydrolase domain containing 14b
known_NIR_19331	chr9	106353181	106353524	-	106353181	106353281	A5SS	ENSMUST00000123555.8	known	0.17	5	24	5	24	y	0.00	0	12	0	12	n	0.15	2	11	2	11	y	0.08	2	23	2	23	y	0.35	6	11	6	11	y	0.39	13	20	13	20	y	0.18	4	18	4	18	y	0.28	8	21	8	21	y	0.0164748910840972	-3.33333333333333	down	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19332	chr9	106353181	106353524	-	106353181	106353692	A5SS	ENSMUST00000067218.14	known	0.10	5	44	5	44	y	0.00	0	47	0	47	n	0.04	2	47	2	47	y	0.04	2	48	2	48	y	0.18	6	27	6	27	y	0.23	13	44	13	44	y	0.13	4	27	4	27	y	0.18	8	36	8	36	y	0.00349244494541196	-4.65332841593355	down	ENSMUSG00000023249.16	Parp3	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 3
known_NIR_19343	chr9	106746560	106747402	-	106715656	106747402	A3SS	ENSMUST00000159620.9	known	0.88	15	2	15	2	y	0.94	15	1	15	1	n	0.93	14	1	14	1	n	0.91	10	1	10	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	n	1.00	6	0	6	0	n	1.00	7	0	7	0	n	0.0076408389421475	-6.42539604115686	down	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
known_NIR_19364	chr9	107456169	107460016	+	107456169	107456299	3pMXE	ENSMUST00000123005.8	known	0.04	7	159	7	159	y	0.03	2	67	2	67	y	0.05	7	136	7	136	y	0.02	2	97	2	97	y	0.00	0	105	0	105	n	0.00	0	162	0	162	n	0.00	0	74	0	74	n	0.00	0	125	0	125	n	0.0123075518214863	5.42217668469038	up	ENSMUSG00000010051.16	Hyal1	chr9	protein_coding	hyaluronoglucosaminidase 1
known_NIR_19365	chr9	107456169	107460016	+	107456169;107456584	107456299;107460016	ES	ENSMUST00000130053.8	known	0.08	7	80.0	7	159;1	n	0.06	2	33.5	2	67;0	n	0.09	7	68.0	7	136;0	n	0.04	2	48.5	2	97;0	n	0.00	0	52.5	0	105;0	n	0.00	0	81.0	0	162;0	n	0.00	0	37.0	0	74;0	n	0.00	0	62.5	0	125;0	n	0.00889870539052383	6.08833282682291	up	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19366	chr9	107456169	107460016	+	107456169;107458134	107456299;107460016	ES	ENSMUST00000122985.8	known	0.06	7	110.0	7	159;61	y	0.04	2	48.5	2	67;30	y	0.06	7	103.0	7	136;70	y	0.03	2	68.0	2	97;39	y	0.00	0	79.5	0	105;54	n	0.00	0	116.0	0	162;70	n	0.00	0	61.5	0	74;49	n	0.00	0	91.5	0	125;58	n	0.00795988321642177	6.33333333333333	up	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19370	chr9	107458134	107460016	+	107456169	107460016	A5SS	ENSMUST00000127380.8	known	0.90	61	7	61	7	y	0.94	30	2	30	2	y	0.91	70	7	70	7	y	0.95	39	2	39	2	y	1.00	54	0	54	0	n	1.00	70	0	70	0	n	1.00	49	0	49	0	n	1.00	58	0	58	0	n	0.00807513762155935	-6.30126037812605	down	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
known_NIR_19385	chr9	107536443	107544503	-	107536443	107544335	A5SS	ENSMUST00000010208.14	known	0.84	1641	306	1641	306	y	0.81	640	147	640	147	y	0.85	1104	200	1104	200	y	0.82	895	199	895	199	y	0.86	1087	182	1087	182	y	0.85	1677	295	1677	295	y	0.88	1010	140	1010	140	y	0.86	2124	341	2124	341	y	0.0302082193128718	-2.93141950921104	down	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
known_NIR_19638	chr9	119190249	119190403	+	119190249	119193563	A3SS	ENSMUST00000039610.10	known	0.23	41	134	41	134	y	0.27	17	47	17	47	y	0.26	45	131	45	131	y	0.27	24	65	24	65	y	0.24	26	84	26	84	y	0.20	38	152	38	152	y	0.14	17	103	17	103	y	0.20	33	134	33	134	y	0.0482860088503048	2.75519384388992	up	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
known_NIR_19640	chr9	119257142	119257291	+	119257142	119257267	A3SS	ENSMUST00000165044.3	known	0.50	7	7	7	7	y	1.00	1	0	1	0	n	0.67	2	1	2	1	n	0.56	5	4	5	4	n	0.00	0	3	0	3	n	0.58	7	5	7	5	y	0.18	2	9	2	9	y	0.22	2	7	2	7	n	0.038147983172419	2.65283499525778	up	ENSMUSG00000061393.15	Acvr2b	chr9	protein_coding	activin receptor IIB
known_NIR_19656	chr9	121211998	121220923	+	121193365	121220923	A5SS	ENSMUST00000211301.2	known	0.49	28	29	28	29	y	0.45	13	16	13	16	y	0.48	20	22	20	22	y	0.62	21	13	21	13	y	0.17	5	24	5	24	y	0.37	17	29	17	29	y	0.33	8	16	8	16	y	0.19	6	25	6	25	y	0.00902363723483605	3.91895508461425	up	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
known_NIR_19684	chr9	121681675;121685938	121685787;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.02	7.5	397	9;6	397	y	0.01	2.0	166	2;2	166	y	0.02	8.0	416	4;12	416	y	0.01	1.5	146	2;1	146	n	0.00	1.5	332	3;0	332	n	0.01	5.0	460	7;3	460	y	0.01	4.5	407	5;4	407	y	0.00	1.5	374	2;1	374	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19687	chr9	121812889	121824942	-	121812889;121813222	121813166;121824942	ES	ENSMUST00000217610.2	known	0.50	1	1.0	1	2;0	n	0.67	3	1.5	3	2;1	n	0.67	2	1.0	2	1;1	n	0.75	3	1.0	3	2;0	n	0.40	1	1.5	1	2;1	n	0.35	3	5.5	3	6;5	y	0.53	4	3.5	4	6;1	n	0.29	1	2.5	1	3;2	n	0.0132139027323466	3.47682378624351	up	ENSMUSG00000066235.8	Pomgnt2	chr9	protein_coding	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
known_NIR_19694	chr9	121961816	121965972	+	121961816	121963027	3pMXE	ENSMUST00000215432.2	known	0.74	25	9	25	9	y	0.67	10	5	10	5	y	0.73	22	8	22	8	y	0.47	7	8	7	8	y	0.86	18	3	18	3	y	0.72	39	15	39	15	y	1.00	30	0	30	0	n	0.90	19	2	19	2	y	0.0440468664810081	-2.54455590549744	down	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19695	chr9	121961816	121965972	+	121963142	121965972	A5SS&ES	ENSMUST00000146832.8	known	0.71	25	10	25	10	y	0.67	10	5	10	5	y	0.67	22	11	22	11	y	0.64	7	4	7	4	y	0.82	18	4	18	4	y	0.76	39	12	39	12	y	1.00	30	0	30	0	n	0.83	19	4	19	4	y	0.0351225119694658	-3.36433905731518	down	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19696	chr9	121961816;121963142	121963027;121965972	+	121961816	121965972	cassetteExon	ENSMUST00000119215.9	known	0.28	9.5	25	9;10	25	y	0.33	5.0	10	5;5	10	y	0.30	9.5	22	8;11	22	y	0.46	6.0	7	8;4	7	y	0.16	3.5	18	3;4	18	y	0.26	13.5	39	15;12	39	y	0.00	0.0	30	0;0	30	n	0.14	3.0	19	2;4	19	y	0.0256849181324485	3.01659763703163	up	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19697	chr9	121961816;121963142	121963053;121965972	+	121961816	121965972	cassetteExon	ENSMUST00000119215.9	known	0.18	5.5	25	1;10	25	n	0.23	3.0	10	1;5	10	n	0.20	5.5	22	0;11	22	n	0.22	2.0	7	0;4	7	n	0.10	2.0	18	0;4	18	n	0.15	7.0	39	2;12	39	y	0.00	0.0	30	0;0	30	n	0.12	2.5	19	1;4	19	n	0.0323363904142867	3.3489621830024	up	ENSMUSG00000038145.18	Snrk	chr9	protein_coding	SNF related kinase
known_NIR_19749	chr9	13693678	13697148	+	13693678	13694902	3pMXE	ENSMUST00000136735.8	known	0.51	22	21	22	21	y	0.52	15	14	15	14	y	0.60	26	17	26	17	y	0.57	20	15	20	15	y	0.62	13	8	13	8	y	0.75	30	10	30	10	y	0.81	21	5	21	5	y	0.67	34	17	34	17	y	0.0222049503057608	-3.44660706799631	down	ENSMUSG00000031918.17	Mtmr2	chr9	protein_coding	myotubularin related protein 2
known_NIR_19764	chr9	15222991	15224070	+	15222991	15223205	3pMXE	ENSMUST00000034415.6	known	0.96	27	1	27	1	n	1.00	19	0	19	0	n	1.00	31	0	31	0	n	1.00	15	0	15	0	n	0.95	18	1	18	1	n	0.86	18	3	18	3	y	0.74	28	10	28	10	y	0.77	20	6	20	6	y	0.0403766020221689	3.30054798802814	up	ENSMUSG00000031939.17	Taf1d	chr9	protein_coding	TATA-box binding protein associated factor, RNA polymerase I, D
known_NIR_19791	chr9	20553392	20555491	-	20553392	20553500	5pMXE	ENSMUST00000155301.8	known	0.39	7	11	7	11	y	0.56	5	4	5	4	n	0.77	10	3	10	3	y	0.33	2	4	2	4	n	0.23	3	10	3	10	y	0.36	4	7	4	7	y	0.11	2	16	2	16	y	0.14	1	6	1	6	n	0.0469537237490968	2.66443996792083	up	ENSMUSG00000066892.15	Fbxl12	chr9	protein_coding	F-box and leucine-rich repeat protein 12
known_NIR_19807	chr9	21177013	21177889	+	21177013	21178035	A3SS	ENSMUST00000065005.5	known	0.02	3	120	3	120	y	0.00	0	37	0	37	n	0.00	0	119	0	119	n	0.00	0	59	0	59	n	0.03	2	57	2	57	y	0.03	3	117	3	117	y	0.02	2	86	2	86	y	0.06	5	72	5	72	y	0.0316858628534036	-3	down	ENSMUSG00000002820.7	Atg4d	chr9	protein_coding	autophagy related 4D, cysteine peptidase
known_NIR_19871	chr9	22041425	22043033	-	22041425	22041819	5pMXE	ENSMUST00000115315.3	known	0.83	201	42	201	42	y	0.71	65	27	65	27	y	0.82	167	37	167	37	y	0.77	91	27	91	27	y	0.99	209	3	209	3	y	0.96	296	12	296	12	y	0.92	218	19	218	19	y	0.97	238	7	238	7	y	0.0030783226774305	-5.69063244679707	down	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19872	chr9	22041425;22041904	22041819;22043033	-	22041425	22043033	cassetteExon	ENSMUST00000069330.14	known	0.10	23.0	201	42;4	201	y	0.18	14.0	65	27;1	65	n	0.11	21.5	167	37;6	167	y	0.13	14.0	91	27;1	91	n	0.01	3.0	209	3;3	209	y	0.03	10.0	296	12;8	296	y	0.05	12.5	218	19;6	218	y	0.02	6.0	238	7;5	238	y	0.0053195590550146	5.19306407032521	up	ENSMUSG00000001348.16	Acp5	chr9	protein_coding	acid phosphatase 5, tartrate resistant
known_NIR_19896	chr9	26985760	26993702	+	26984098	26993702	A5SS	ENSMUST00000073127.14	known	0.53	10	9	10	9	y	0.50	3	3	3	3	n	0.72	21	8	21	8	y	0.54	7	6	7	6	y	0.94	15	1	15	1	n	0.82	14	3	14	3	y	0.80	12	3	12	3	y	0.68	17	8	17	8	y	0.0174544905191382	-3.25528322647049	down	ENSMUSG00000035024.17	Ncapd3	chr9	protein_coding	non-SMC condensin II complex, subunit D3
known_NIR_19905	chr9	32063309;32064005	32063964;32064336	+	32063309	32064336	cassetteExon	ENSMUST00000174641.8	known	0.15	2.0	11	2;2	11	y	-	-	-	-	-	-	0.14	0.5	3	0;1	3	n	0.20	2.0	8	0;4	8	n	0.00	0.0	4	0;0	4	n	0.00	0.0	4	0;0	4	n	-	-	-	-	-	-	0.00	0.0	5	0;0	5	n	0.012666496970848	8.80065979931197	up	ENSMUSG00000041444.15	Arhgap32	chr9	protein_coding	Rho GTPase activating protein 32
known_NIR_19909	chr9	34966945	35010195	-	34966945	35027994	A5SS	ENSMUST00000034537.8	known	0.00	0	252	0	252	n	0.00	0	78	0	78	n	0.01	1	178	1	178	n	0.01	1	83	1	83	n	0.02	3	122	3	122	y	0.02	4	180	4	180	y	0.03	3	102	3	102	y	0.01	2	134	2	134	y	0.0273393097919095	-3	down	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19910	chr9	34966945	35010195	-	34966945	35030299	A5SS	ENSMUST00000213526.2	known	0.00	0	105	0	105	n	0.00	0	78	0	78	n	0.01	1	80	1	80	n	0.02	1	63	1	63	n	0.04	3	67	3	67	y	0.06	4	60	4	60	y	0.10	3	27	3	27	y	0.04	2	45	2	45	y	0.0281254951539046	-3.51631710477147	down	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19940	chr9	37401129	37424910	+	37401129;37402865	37402752;37424910	ES	ENSMUST00000209391.2	known	0.78	9	2.5	9	3;2	y	0.80	2	0.5	2	1;0	n	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	n	0.50	2	2.0	2	2;2	n	0.57	4	3.0	4	1;5	n	0.83	5	1.0	5	0;2	n	0.59	8	5.5	8	3;8	y	0.0283044392907975	2.89698332091627	up	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_19941	chr9	37401129;37402865	37402680;37424910	+	37401129	37424910	cassetteExon	ENSMUST00000211792.2	known	0.10	1.0	9	0;2	9	n	0.00	0.0	2	0;0	2	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.33	1.0	2	0;2	2	n	0.38	2.5	4	0;5	4	n	0.17	1.0	5	0;2	5	n	0.38	5.0	8	2;8	8	y	0.00489224887106774	-5.20855375877647	down	ENSMUSG00000042138.10	Msantd2	chr9	protein_coding	Myb/SANT-like DNA-binding domain containing 2
known_NIR_19951	chr9	42173427	42175418	-	42173427	42175502	A5SS	ENSMUST00000052725.15	known	0.11	44	362	44	362	y	0.04	7	165	7	165	y	0.12	37	272	37	272	y	0.04	8	198	8	198	y	0.16	52	264	52	264	y	0.13	61	407	61	407	y	0.17	59	294	59	294	y	0.13	62	418	62	418	y	0.0402612278227381	-2.90868211647066	down	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
known_NIR_19955	chr9	42938591	42953887	-	42938591;42951892	42951836;42953887	ES	ENSMUST00000165665.9	known	0.58	49	36.0	49	39;33	y	0.60	23	15.5	23	16;15	y	0.60	53	35.0	53	33;37	y	0.63	36	21.5	36	20;23	y	0.47	23	25.5	23	26;25	y	0.51	48	46.5	48	47;46	y	0.49	23	23.5	23	30;17	y	0.49	39	40.0	39	37;43	y	0.000183743210736767	8.55527738208045	up	ENSMUSG00000059495.15	Arhgef12	chr9	protein_coding	Rho guanine nucleotide exchange factor (GEF) 12
known_NIR_19958	chr9	4308919	4309288	-	4308919	4309254	A5SS	ENSMUST00000051589.9	known	0.19	16	69	16	69	y	0.21	8	30	8	30	y	0.20	24	98	24	98	y	0.14	7	42	7	42	y	0.12	8	61	8	61	y	0.13	12	80	12	80	y	0.12	8	61	8	61	y	0.09	7	67	7	67	y	0.012466833313243	3.93366040864312	up	ENSMUSG00000025894.12	Aasdhppt	chr9	protein_coding	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
known_NIR_19967	chr9	44238116	44238443	+	44237492	44238443	A5SS	ENSMUST00000215248.2	known	1.00	6	0	6	0	n	1.00	2	0	2	0	n	0.42	5	7	5	7	y	1.00	2	0	2	0	n	0.38	3	5	3	5	n	0.70	7	3	7	3	y	0.25	1	3	1	3	n	0.17	1	5	1	5	n	0.0435457652136934	2.57925387066786	up	ENSMUSG00000032123.6	Dpagt1	chr9	protein_coding	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
known_NIR_20032	chr9	45809789	45816104	-	45809789	45811044	A5SS&ES	ENSMUST00000162699.8	known	0.07	4	51	4	51	y	0.11	3	24	3	24	y	0.20	8	32	8	32	y	0.18	7	32	7	32	y	0.17	5	24	5	24	y	0.25	7	21	7	21	y	0.37	7	12	7	12	y	0.29	12	29	12	29	y	0.0486686779572311	-2.52534324212889	down	ENSMUSG00000042790.17	Rnf214	chr9	protein_coding	ring finger protein 214
known_NIR_20057	chr9	46146024	46146557	-	46146024	46146453	A5SS	ENSMUST00000121916.8	known	0.95	5803	322	5803	322	y	0.94	2427	143	2427	143	y	0.94	5364	332	5364	332	y	0.95	2699	137	2699	137	y	0.93	5960	419	5960	419	y	0.93	7619	532	7619	532	y	0.94	7439	475	7439	475	y	0.94	7591	467	7591	467	y	0.0498252627805777	2.44948974278316	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20094	chr9	50675590	50676065	-	50675590	50675996	A5SS	ENSMUST00000042468.9	known	0.11	19	159	19	159	y	0.15	15	83	15	83	y	0.10	18	165	18	165	y	0.11	12	96	12	96	y	0.05	5	91	5	91	y	0.08	14	155	14	155	y	0.07	10	137	10	137	y	0.07	10	139	10	139	y	0.0123334572019643	3.92232270276368	up	ENSMUSG00000037971.11	1110032A03Rik	chr9	protein_coding	RIKEN cDNA 1110032A03 gene
known_NIR_20319	chr9	69919943;69922297	69922205;69922574	+	69919943	69922574	cassetteExon	ENSMUST00000118198.8	known	0.02	5.5	273	3;8	273	y	0.03	8.0	233	4;12	233	y	0.02	5.0	274	1;9	274	n	0.04	10.5	240	3;18	240	y	0.01	1.5	132	0;3	132	n	0.01	3.0	217	0;6	217	n	0.01	2.0	145	0;4	145	n	0.02	3.5	157	2;5	157	y	0.0435576347221575	2.77746029931765	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20323	chr9	69922692	69924101	+	69923219	69924101	5pMXE	ENSMUST00000148239.8	known	0.93	328	24	328	24	y	0.95	287	14	287	14	y	0.93	336	26	336	26	y	0.94	291	18	291	18	y	0.88	136	18	136	18	y	0.92	216	20	216	20	y	0.92	164	15	164	15	y	0.91	211	22	211	22	y	0.0420458481154015	2.82842712474619	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20324	chr9	69922692;69923219	69923050;69924101	+	69922692	69924101	cassetteExon	ENSMUST00000118198.8	known	0.07	26.0	328	28;24	328	y	0.03	10.0	287	6;14	287	y	0.07	27.0	336	28;26	336	y	0.04	13.0	291	8;18	291	y	0.11	16.0	136	14;18	136	y	0.07	16.0	216	12;20	216	y	0.09	15.5	164	16;15	164	y	0.08	19.0	211	16;22	211	y	0.0411459742270664	-2.6148057867317	down	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20325	chr9	69924205	69924355	+	69924205	69929719	A3SS	ENSMUST00000119905.8	known	0.70	7	3	7	3	y	0.55	6	5	6	5	y	0.62	10	6	10	6	y	0.22	2	7	2	7	n	1.00	6	0	6	0	n	0.94	15	1	15	1	n	0.80	12	3	12	3	y	0.80	12	3	12	3	y	0.0326990547475472	-3.10105746513073	down	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20330	chr9	69924205	69929719	+	69924205	69926671	3pMXE	ENSMUST00000140305.8	known	0.01	3	353	3	353	y	0.02	5	309	5	309	y	0.02	6	348	6	348	y	0.02	7	311	7	311	y	0.00	0	180	0	180	n	0.00	1	245	1	245	n	0.01	3	197	3	197	y	0.01	3	225	3	225	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20389	chr9	75306033	75317137	-	75306033	75317145	A5SS	ENSMUST00000049355.11	known	0.00	0	19	0	19	n	0.04	1	23	1	23	n	0.04	1	22	1	22	n	0.05	1	20	1	20	n	0.13	2	13	2	13	y	0.05	1	18	1	18	n	0.12	2	14	2	14	y	0.14	4	24	4	24	y	0.0231960421696268	-3.33635641550391	down	ENSMUSG00000042688.17	Mapk6	chr9	protein_coding	mitogen-activated protein kinase 6
known_NIR_20397	chr9	77829303	77864423	+	77824808	77864423	A5SS	ENSMUST00000034904.14	known	0.01	2	203	2	203	y	0.03	3	90	3	90	y	0.01	3	219	3	219	y	0.03	3	102	3	102	y	0.01	1	177	1	177	n	0.00	0	312	0	312	n	0.00	0	158	0	158	n	0.00	0	306	0	306	n	0.0485566704091127	2.78151794983659	up	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
known_NIR_20403	chr9	78249220	78254371	-	78249220	78249769	A5SS&ES	ENSMUST00000125479.8	known	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	4	4	4	4	n	-	-	-	-	-	-	0.16	3	16	3	16	y	0.32	11	23	11	23	y	0.36	10	18	10	18	y	0.38	26	43	26	43	y	0.0297913305230857	3.90651629527094	up	ENSMUSG00000057933.11	Gsta2	chr9	protein_coding	glutathione S-transferase, alpha 2 (Yc2)
known_NIR_20413	chr9	7938539;7950540	7950493;7952954	-	7938539	7952954	cassetteExon	ENSMUST00000086580.12	known	0.55	76.0	62	81;71	62	y	0.44	27.5	35	30;25	35	y	0.52	51.0	48	45;57	48	y	0.57	45.0	34	49;41	34	y	0.71	45.0	18	44;46	18	y	0.67	68.0	34	68;68	34	y	0.58	44.0	32	46;42	32	y	0.65	65.5	36	66;65	36	y	0.0153100786991235	-3.35873852777973	down	ENSMUSG00000053110.14	Yap1	chr9	protein_coding	yes-associated protein 1
known_NIR_20415	chr9	79665861	79666432	-	79665861	79666922	A5SS	ENSMUST00000034881.8	known	0.00	2	1278	2	1278	y	0.00	3	721	3	721	y	0.01	8	1471	8	1471	y	0.00	2	656	2	656	y	0.01	13	1063	13	1063	y	0.01	16	1513	16	1513	y	0.02	19	1237	19	1237	y	0.02	24	1440	24	1440	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
known_NIR_20418	chr9	79974854;79994805	79994712;79999549	+	79974854	79999549	cassetteExon	ENSMUST00000176640.8	known	0.55	18.5	15	29;8	15	y	0.62	10.0	6	12;8	6	y	0.64	10.5	6	20;1	6	n	0.55	8.5	7	15;2	7	y	0.44	5.5	7	9;2	7	y	0.45	10.5	13	18;3	13	y	0.42	6.5	9	8;5	9	y	0.43	12.0	16	21;3	16	y	0.005059673624989	6.37225500139605	up	ENSMUSG00000034252.15	Senp6	chr9	protein_coding	SUMO/sentrin specific peptidase 6
known_NIR_20460	chr9	89095309	89097262	+	89093534	89097262	A5SS	ENSMUST00000118887.8	known	0.00	0	62	0	62	n	0.06	1	17	1	17	n	0.03	2	57	2	57	y	0.06	2	29	2	29	y	0.14	6	38	6	38	y	0.15	8	47	8	47	y	0.11	4	33	4	33	y	0.11	4	32	4	32	y	0.00297902511896371	-5.09116882454314	down	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20543	chrX	104087717	104110365	-	104091616	104110365	A3SS&ES	ENSMUST00000127533.8	known	0.07	1	14	1	14	n	0.14	1	6	1	6	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.26	5	14	5	14	y	0.21	3	11	3	11	y	0.23	3	10	3	10	y	0.00813436358374597	-5.24133302761373	down	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20544	chrX	104087717;104091616	104091515;104110365	-	104087717	104110365	cassetteExon	ENSMUST00000156974.8	known	0.93	14.0	1	14;14	1	n	0.83	5.0	1	4;6	1	n	1.00	13.0	0	14;12	0	n	1.00	3.0	0	4;2	0	n	0.78	3.5	1	4;3	1	n	0.74	14.0	5	14;14	5	y	0.80	12.0	3	13;11	3	y	0.73	8.0	3	6;10	3	y	0.0151735185823975	4.08333802098299	up	ENSMUSG00000087174.8	5530601H04Rik	chrX	lncRNA	RIKEN cDNA 5530601H04 gene
known_NIR_20628	chrX	139442905	139498877	-	139442905	139443595	5pMXE	ENSMUST00000055738.12	known	0.34	83	159	83	159	y	0.33	27	56	27	56	y	0.36	74	131	74	131	y	0.36	31	56	31	56	y	0.21	33	127	33	127	y	0.20	60	243	60	243	y	0.31	38	86	38	86	y	0.25	48	142	48	142	y	0.0200550024129528	4.0290357201638	up	ENSMUSG00000031431.14	Tsc22d3	chrX	protein_coding	TSC22 domain family, member 3
known_NIR_20683	chrX	158039184	158068262	+	158062199	158068262	A5SS&ES	ENSMUST00000112493.8	known	0.56	5	4	5	4	n	0.50	2	2	2	2	n	0.56	5	4	5	4	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.25	2	6	2	6	n	0.0309325460959478	2.80650890416302	up	ENSMUSG00000031309.16	Rps6ka3	chrX	protein_coding	ribosomal protein S6 kinase polypeptide 3
known_NIR_20742	chrX	20826258	20827874	-	20826258	20827919	A5SS	ENSMUST00000129899.8	known	0.03	5	172	5	172	y	0.03	3	101	3	101	y	0.04	6	154	6	154	y	0.02	2	102	2	102	y	0.07	7	94	7	94	y	0.05	9	167	9	167	y	0.09	11	114	11	114	y	0.07	11	143	11	143	y	0.00951608277659585	-4.38178046004133	down	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
known_NIR_20752	chrX	36360671;36362757	36362719;36363160	-	36360671	36363160	cassetteExon	ENSMUST00000076265.13	known	0.42	11.0	15	11;11	15	y	0.36	4.5	8	4;5	8	y	0.28	9.0	23	10;8	23	y	0.27	1.5	4	0;3	4	n	0.16	3.0	16	2;4	16	y	0.15	6.0	33	8;4	33	y	0.30	6.5	15	4;9	15	y	0.12	2.5	19	3;2	19	y	0.0315125983413612	2.80361588109599	up	ENSMUSG00000036572.17	Upf3b	chrX	protein_coding	UPF3 regulator of nonsense transcripts homolog B (yeast)
known_NIR_20768	chrX	41157359	41183244	+	41157359	41160119	3pMXE	ENSMUST00000141316.8	known	0.79	41	11	41	11	y	0.92	22	2	22	2	y	0.73	30	11	30	11	y	0.80	20	5	20	5	y	0.57	16	12	16	12	y	0.78	31	9	31	9	y	0.48	12	13	12	13	y	0.62	25	15	25	15	y	0.0446123316669208	2.65355778827033	up	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20796	chrX	48100511	48102374	-	48100511;48102057	48102010;48102374	ES	ENSMUST00000167659.8	known	0.51	19	18.0	19	13;23	y	0.61	10	6.5	10	8;5	y	0.55	20	16.5	20	18;15	y	0.55	9	7.5	9	9;6	y	0.43	10	13.0	10	13;13	y	0.46	21	25.0	21	25;25	y	0.50	16	16.0	16	17;15	y	0.52	14	13.0	14	13;13	y	0.036164891485988	2.68804090552477	up	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
known_NIR_20823	chrX	59271153	59281917	-	59271153;59274612	59274508;59281917	ES	ENSMUST00000154051.8	known	0.20	90	364.5	90	401;328	y	0.12	17	121.0	17	124;118	y	0.17	59	279.5	59	314;245	y	0.18	37	167.5	37	188;147	y	0.21	60	221.0	60	229;213	y	0.28	115	293.5	115	328;259	y	0.23	48	165.0	48	163;167	y	0.25	92	282.5	92	317;248	y	0.0165504218501075	-3.31294578224539	down	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
known_NIR_20828	chrX	69506627;69508692	69508609;69510760	-	69506627	69510760	cassetteExon	ENSMUST00000101506.10	known	0.96	52.5	2	55;50	2	y	1.00	49.5	0	50;49	0	n	0.94	46.5	3	52;41	3	y	1.00	35.0	0	34;36	0	n	0.90	27.5	3	35;20	3	y	0.91	41.0	4	40;42	4	y	0.74	25.5	9	23;28	9	y	0.86	37.5	6	38;37	6	y	0.0446200831914771	2.93005469242401	up	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20830	chrX	69510962	69513724	-	69510809	69513724	A3SS	ENSMUST00000154400.8	known	0.27	3	8	3	8	y	0.00	0	2	0	2	n	0.45	5	6	5	6	y	0.20	1	4	1	4	n	0.50	2	2	2	2	n	0.50	4	4	4	4	n	0.38	3	5	3	5	n	0.75	3	1	3	1	n	0.0481059988208225	-2.49444772309702	down	ENSMUSG00000073139.10	Tmem185a	chrX	protein_coding	transmembrane protein 185A
known_NIR_20842	chrX	70599843	70601659	+	70599614	70601659	A5SS	ENSMUST00000072699.13	known	0.22	2	7	2	7	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.20	1	4	1	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.0221763737348035	3.77389716270345	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20843	chrX	70599843	70601659	+	70599796	70601659	A5SS	ENSMUST00000114582.9	known	0.15	2	11	2	11	y	0.10	1	9	1	9	n	0.18	2	9	2	9	y	0.08	1	11	1	11	n	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.0441593070262951	2.58472820856512	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20844	chrX	70600714	70601659	+	70599614	70601659	A5SS	ENSMUST00000072699.13	known	0.42	5	7	5	7	y	0.40	2	3	2	3	n	0.25	3	9	3	9	y	0.43	3	4	3	4	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.00	0	7	0	7	n	0.00143824648585412	5.55615470881995	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20845	chrX	70600714	70601659	+	70599796	70601659	A5SS	ENSMUST00000114582.9	known	0.31	5	11	5	11	y	0.18	2	9	2	9	y	0.25	3	9	3	9	y	0.21	3	11	3	11	y	0.00	0	11	0	11	n	0.00	0	17	0	17	n	0.12	1	7	1	7	n	0.00	0	6	0	6	n	0.00236722617515885	5.04810398903328	up	ENSMUSG00000015217.12	Hmgb3	chrX	protein_coding	high mobility group box 3
known_NIR_20884	chrX	73065987	73066079	-	73065855	73066079	A3SS	ENSMUST00000114354.10	known	0.04	8	191	8	191	y	0.03	4	122	4	122	y	0.06	9	134	9	134	y	0.06	8	117	8	117	y	0.02	1	63	1	63	n	0.03	6	175	6	175	y	0.03	4	114	4	114	y	0.01	2	152	2	152	y	0.0367698926093315	2.80975743474508	up	ENSMUSG00000031392.19	Irak1	chrX	protein_coding	interleukin-1 receptor-associated kinase 1
known_NIR_20907	chrX	73332119	73332711	+	73332119	73332268	3pMXE	ENSMUST00000134936.9	known	0.56	45	35	45	35	y	0.50	14	14	14	14	y	0.52	51	47	51	47	y	0.53	25	22	25	22	y	0.75	38	13	38	13	y	0.58	37	27	37	27	y	0.76	50	16	50	16	y	0.65	46	25	46	25	y	0.0302323229401419	-3.52364277334701	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20908	chrX	73332119	73332711	+	73332119;73332320	73332268;73332711	ES	ENSMUST00000069722.13	known	0.58	45	32.0	45	35;29	y	0.55	14	11.5	14	14;9	y	0.51	51	49.5	51	47;52	y	0.55	25	20.5	25	22;19	y	0.70	38	16.5	38	13;20	y	0.56	37	28.5	37	27;30	y	0.73	50	18.5	50	16;21	y	0.67	46	23.0	46	25;21	y	0.04337940925985	-2.95486468327108	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20910	chrX	73332119;73332625	73332268;73332711	+	73332119	73332711	cassetteExon	ENSMUST00000124200.8	known	0.35	24.5	45	35;14	45	y	0.40	9.5	14	14;5	14	y	0.41	35.0	51	47;23	51	y	0.36	14.0	25	22;6	25	y	0.27	14.0	38	13;15	38	y	0.36	20.5	37	27;14	37	y	0.25	17.0	50	16;18	50	y	0.32	22.0	46	25;19	46	y	0.0403888069105624	2.7712812921102	up	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20911	chrX	73332320	73332711	+	73332625	73332711	A5SS	ENSMUST00000156212.8	known	0.67	29	14	29	14	y	0.64	9	5	9	5	y	0.69	52	23	52	23	y	0.76	19	6	19	6	y	0.57	20	15	20	15	y	0.68	30	14	30	14	y	0.54	21	18	21	18	y	0.53	21	19	21	19	y	0.0456182000145923	2.56904651573302	up	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20912	chrX	73332320;73332625	73332535;73332711	+	73332320	73332711	cassetteExon	ENSMUST00000069722.13	known	0.19	7.0	29	0;14	29	n	0.22	2.5	9	0;5	9	n	0.18	11.5	52	0;23	52	n	0.14	3.0	19	0;6	19	n	0.29	8.0	20	1;15	20	n	0.19	7.0	30	0;14	30	n	0.30	9.0	21	0;18	21	n	0.33	10.5	21	2;19	21	y	0.0439086240726467	-2.74718734845771	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20992	chrX	7766004	7767200	+	7765708	7767200	A5SS	ENSMUST00000033498.10	known	0.01	3	210	3	210	y	0.02	2	120	2	120	y	0.01	1	165	1	165	n	0.02	2	126	2	126	y	0.00	0	105	0	105	n	0.01	1	190	1	190	n	0.01	1	178	1	178	n	0.00	0	169	0	169	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000031158.12	Timm17b	chrX	protein_coding	translocase of inner mitochondrial membrane 17b
known_NIR_21002	chrX	8007447	8009490	-	8009194	8009490	3pMXE	ENSMUST00000115621.9	known	0.00	0	278	0	278	n	0.00	0	482	0	482	n	0.01	3	208	3	208	y	0.00	0	251	0	251	n	0.03	3	105	3	105	y	0.02	3	157	3	157	y	0.01	2	151	2	151	y	0.03	6	167	6	167	y	0.0166979601915548	-3.70328039909021	down	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21004	chrX	8007447;8009194	8009066;8009490	-	8007447	8009490	cassetteExon	ENSMUST00000040010.10	known	1.00	143.0	0	8;278	0	n	1.00	241.0	0	0;482	0	n	0.97	107.0	3	6;208	3	y	1.00	129.5	0	8;251	0	n	0.95	52.5	3	0;105	3	n	0.96	81.5	3	6;157	3	y	0.97	77.0	2	3;151	2	y	0.94	89.0	6	11;167	6	y	0.00945721941260737	3.78968364479933	up	ENSMUSG00000031167.17	Rbm3	chrX	protein_coding	RNA binding motif (RNP1, RRM) protein 3
known_NIR_21021	chrX	84780955;84782845	84782828;84783901	-	84780955	84783901	cassetteExon	ENSMUST00000142152.2	known	0.12	27.0	200	27;27	200	y	0.11	8.0	64	7;9	64	y	0.13	24.5	169	23;26	169	y	0.08	7.0	84	7;7	84	y	0.05	6.0	111	6;6	111	y	0.04	6.5	156	6;7	156	y	0.10	12.0	104	9;15	104	y	0.03	4.5	152	6;3	152	y	0.0310085582338525	2.90548799087456	up	ENSMUSG00000025059.17	Gk	chrX	protein_coding	glycerol kinase
known_NIR_21029	chrX	93410932	93423532	+	93410768	93423532	A5SS	ENSMUST00000113898.8	known	0.07	3	38	3	38	y	0.00	0	16	0	16	n	0.02	1	41	1	41	n	0.07	1	14	1	14	n	0.07	2	25	2	25	y	0.16	4	21	4	21	y	0.17	5	24	5	24	y	0.27	8	22	8	22	y	0.0447301955236603	-2.85844024395688	down	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
known_NIR_21030	chrX	93411091	93423532	+	93410768	93423532	A5SS	ENSMUST00000113898.8	known	0.00	0	38	0	38	n	0.00	0	16	0	16	n	0.00	0	41	0	41	n	0.00	0	14	0	14	n	0.04	1	25	1	25	n	0.09	2	21	2	21	y	0.04	1	24	1	24	n	0.08	2	22	2	22	y	0.0176754295354474	-4.75293187893358	down	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
known_NIR_21031	chrX	93411091	93423532	+	93410932	93423532	A5SS	ENSMUST00000113896.8	known	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.00890431761529044	-6.08697152544446	down	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
novel_NIR_35	chr1	120047742	120048686	-	120047742	120048492	5pMXE	ENSMUST00000151708.3	novel	0.60	12	8	12	8	y	0.50	8	8	8	8	y	0.50	9	9	9	9	y	0.43	3	4	3	4	y	0.63	12	7	12	7	y	0.61	17	11	17	11	y	0.65	17	9	17	9	y	0.77	10	3	10	3	y	0.0200661904840811	-3.14085250091074	down	ENSMUSG00000026385.17	Dbi	chr1	protein_coding	diazepam binding inhibitor
novel_NIR_71	chr1	128187274	128188568	+	128187274	128188571	A3SS	ENSMUST00000027592.6	novel	0.12	44	320	44	320	n	0.11	25	195	25	195	n	0.13	38	248	38	248	n	0.13	31	216	31	216	n	0.08	16	193	16	193	n	0.07	14	201	14	201	n	0.08	19	212	19	212	n	0.11	24	196	24	196	n	0.0144514458951745	3.78968364479933	up	ENSMUSG00000026353.10	Ubxn4	chr1	protein_coding	UBX domain protein 4
novel_NIR_101	chr1	130642313	130645380	-	130642313	130646559	A5SS	ENSMUST00000189534.7	novel	-	-	-	-	-	-	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.50	2	2	2	2	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0208093606917607	-6.8235294117647	down	ENSMUSG00000026409.15	Pfkfb2	chr1	protein_coding	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
novel_NIR_112	chr1	130986499	130990245	-	130986499	131000077	A5SS	ENSMUST00000188459.4	novel	0.71	12	5	12	5	n	0.29	2	5	2	5	n	0.33	3	6	3	6	y	0.60	3	2	3	2	n	0.00	0	5	0	5	n	0.44	4	5	4	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.0481104620982076	2.47840437404021	up	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_117	chr1	130986499;130990278	130990245;131000077	-	130986499	131000077	cassetteExon	ENSMUST00000188459.4	novel	0.66	9.5	5	12;7	5	y	0.33	2.5	5	2;3	5	y	0.20	1.5	6	3;0	6	n	0.64	3.5	2	3;4	2	y	0.00	0.0	5	0;0	5	n	0.33	2.5	5	4;1	5	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.0411598780065415	2.65969710335935	up	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_147	chr1	132931628	132931705	-	132931628	132932392	A5SS	ENSMUST00000186617.7	novel	0.05	1	18	1	18	n	0.10	1	9	1	9	n	0.07	1	14	1	14	n	0.11	2	17	2	17	n	0.00	0	11	0	11	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	8	0	8	n	0.00930868023762772	5.99175257342114	up	ENSMUSG00000054387.14	Mdm4	chr1	protein_coding	transformed mouse 3T3 cell double minute 4
novel_NIR_447	chr1	163977213	163979008	-	163977213	163979428	A5SS	ENSMUST00000133341.3	novel	0.31	17	37	17	37	y	0.27	6	16	6	16	y	0.21	11	41	11	41	y	0.33	14	29	14	29	y	0.44	24	30	24	30	y	0.42	23	32	23	32	y	0.32	19	41	19	41	y	0.42	25	34	25	34	y	0.019342178246574	-3.16962326277225	down	ENSMUSG00000086593.3	Gm16548	chr1	lncRNA	predicted gene 16548
novel_NIR_517	chr1	170708610	170712477	-	170708597	170712477	A3SS	ENSMUST00000172042.2	novel	0.40	4	6	4	6	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	3	6	3	6	y	0.40	2	3	2	3	y	0.0292920780351277	2.93252168755527	up	ENSMUSG00000026659.14	Dusp12	chr1	protein_coding	dual specificity phosphatase 12
novel_NIR_537	chr1	171066963;171067152	171067061;171067597	-	171066963	171067597	cassetteExon	ENSMUST00000131286.3	novel	0.67	2.0	1	2;2	1	y	0.80	4.0	1	7;1	1	n	0.56	9.0	7	16;2	7	y	0.78	3.5	1	7;0	1	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.00105975980017293	12.6727520321277	up	ENSMUSG00000013593.13	Ndufs2	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S2
novel_NIR_600	chr1	176589066	176597279	-	176589066	176596799	A5SS	ENSMUST00000195433.6	novel	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.0225728977775494	-3.79473319220206	down	ENSMUSG00000057335.12	Cep170	chr1	protein_coding	centrosomal protein 170
novel_NIR_740	chr1	20188171	20202149	-	20188171	20268242	A5SS	ENSMUST00000088448.12	novel	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.67	4	2	4	2	y	1.00	7	0	7	0	y	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00211337970824095	10.0241975281054	up	ENSMUSG00000043760.17	Pkhd1	chr1	protein_coding	polycystic kidney and hepatic disease 1
novel_NIR_868	chr1	44158685	44159334	+	44158355	44159334	A5SS	ENSMUST00000155917.8	novel	0.75	3	1	3	1	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.40	2	3	2	3	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.0398368672359089	2.92987344706927	up	ENSMUSG00000041684.12	Bivm	chr1	protein_coding	basic, immunoglobulin-like variable motif containing
novel_NIR_886	chr1	4911355	4918363	+	4911355	4937693	A3SS	ENSMUST00000155020.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	3	3	3	3	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.0377495513506237	5	up	ENSMUSG00000104217.2	Gm37988	chr1	protein_coding	predicted gene, 37988
novel_NIR_933	chr1	58154575	58158640	+	58158212	58158640	A5SS&ES	ENSMUST00000159014.2	novel	0.00	0	15	0	15	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	1	0	1	n	0.50	6	6	6	6	y	0.16	3	16	3	16	y	0.52	11	10	11	10	n	0.19	3	13	3	13	y	0.0489130315385221	-2.68063924683154	down	ENSMUSG00000064294.13	Aox3	chr1	protein_coding	aldehyde oxidase 3
novel_NIR_970	chr1	60490296	60532697	-	60529480	60532697	3pMXE	ENSMUST00000140485.8	novel	0.14	6	38	6	38	n	0.03	1	38	1	38	n	0.00	0	15	0	15	n	0.26	9	25	9	25	y	0.36	5	9	5	9	y	0.25	8	24	8	24	y	0.44	7	9	7	9	y	0.26	8	23	8	23	y	0.0273361458762758	-2.96311413068648	down	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_972	chr1	60511025	60532697	-	60529480	60532697	3pMXE	ENSMUST00000140485.8	novel	0.07	3	38	3	38	n	0.00	0	38	0	38	n	0.12	2	15	2	15	n	0.00	0	25	0	25	n	0.18	2	9	2	9	y	0.08	2	24	2	24	n	0.18	2	9	2	9	y	0.15	4	23	4	23	y	0.0391189106934572	-2.66076042095096	down	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_1020	chr1	65214527	65225368	-	65214527	65214671	5pMXE	ENSMUST00000149310.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.0377495513506237	5	up	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1064	chr1	72903239	72909763	-	72903239	72912965	A5SS	ENSMUST00000027377.9	novel	0.17	1	5	1	5	n	0.00	0	10	0	10	n	0.09	1	10	1	10	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.26	5	14	5	14	y	0.67	2	1	2	1	y	0.30	3	7	3	7	y	0.0488404267868078	-2.80874454808474	down	ENSMUSG00000026185.9	Igfbp5	chr1	protein_coding	insulin-like growth factor binding protein 5
novel_NIR_1082	chr1	74325169	74326300	+	74325169	74386544	A3SS	ENSMUST00000027370.13	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	0.83	5	1	5	1	y	-	-	-	-	-	-	0.92	12	1	12	1	y	0.0028571298870537	-18.6682164158086	down	ENSMUSG00000026179.15	Pnkd	chr1	protein_coding	paroxysmal nonkinesiogenic dyskinesia
novel_NIR_1232	chr1	87895320	87901799	-	87895320;87896171	87896118;87901799	ES	ENSMUST00000187758.7	novel	0.09	4	41.0	4	40;42	n	0.07	1	14.0	1	11;17	n	0.06	2	31.0	2	31;31	n	0.08	1	11.0	1	16;6	n	0.14	3	18.0	3	20;16	n	0.19	8	33.5	8	36;31	y	0.09	2	20.0	2	19;21	n	0.15	4	23.5	4	26;21	y	0.0408025218001834	-3.13164092575959	down	ENSMUSG00000005501.15	Usp40	chr1	protein_coding	ubiquitin specific peptidase 40
novel_NIR_1353	chr1	93369972	93373283	-	93369972	93389066	A5SS	ENSMUST00000189025.7	novel	1.00	7	0	7	0	y	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.0184014351611825	4.68292905790847	up	ENSMUSG00000034088.16	Hdlbp	chr1	protein_coding	high density lipoprotein (HDL) binding protein
novel_NIR_1425	chr10	111444612;111446678	111446432;111446900	+	111444612	111446900	cassetteExon	ENSMUST00000219137.2	novel	0.15	21.0	122	22;20	122	y	0.09	7.5	73	10;5	73	n	0.15	17.0	99	14;20	99	y	0.12	10.5	80	18;3	80	n	0.37	28.0	47	20;36	47	y	0.32	41.5	88	42;41	88	y	0.40	38.5	57	40;37	57	y	0.32	36.5	77	33;40	77	y	0.000153468639778925	-9.21764801698541	down	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1512	chr10	127205626	127206008	+	127205583	127206008	A5SS	ENSMUST00000219640.2	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.00	0	4	0	4	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00788678095453256	6.35399419782315	up	ENSMUSG00000112426.2	Gm47200	chr10	lncRNA	predicted gene, 47200
novel_NIR_1547	chr10	127836540	127843314	-	127836545	127843314	A3SS	ENSMUST00000219447.2	novel	0.50	9	9	9	9	y	0.25	1	3	1	3	n	0.44	7	9	7	9	y	0.33	4	8	4	8	y	0.80	8	2	8	2	y	0.76	13	4	13	4	y	0.50	8	8	8	8	y	0.80	28	7	28	7	y	0.0116949414404759	-3.66790763972411	down	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1574	chr10	128158685	128159199	+	128158931	128159199	5pMXE	ENSMUST00000219199.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	-	-	-	-	-	-	1.00	5	0	5	0	y	1.00	6	0	6	0	y	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
novel_NIR_1726	chr10	40040282	40043657	+	40040282;40041225	40041066;40043657	ES	ENSMUST00000213387.2	novel	0.26	4	11.5	4	16;7	y	0.25	1	3.0	1	1;5	n	0.29	2	5.0	2	3;7	y	0.00	0	2.5	0	2;3	n	0.43	3	4.0	3	4;4	y	0.62	13	8.0	13	6;10	y	0.31	2	4.5	2	4;5	y	0.48	6	6.5	6	5;8	y	0.03130796552628	-2.79823441300328	down	ENSMUSG00000110781.2	Gm31992	chr10	lncRNA	predicted gene, 31992
novel_NIR_1762	chr10	43786913	43804319	+	43786913;43797431	43797383;43804319	ES	ENSMUST00000054418.12	novel	0.09	3	30.5	3	29;32	n	0.11	2	15.5	2	12;19	n	0.15	5	28.5	5	30;27	y	0.20	4	16.0	4	12;20	y	0.00	0	20.5	0	23;18	n	0.00	0	35.5	0	31;40	n	0.00	0	14.0	0	16;12	n	0.04	1	23.5	1	20;27	n	0.00836429941614816	4.85530824221163	up	ENSMUSG00000019864.15	Rtn4ip1	chr10	protein_coding	reticulon 4 interacting protein 1
novel_NIR_1775	chr10	4636956	4662313	+	4660294	4662313	5pMXE	ENSMUST00000105588.8	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.40	2	3	2	3	y	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.44	4	5	4	5	y	0.0109718440560266	-4.36759707713774	down	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1831	chr10	61532521	61534028	+	61532521	61535222	A3SS	ENSMUST00000219768.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.17	1	5	1	5	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.00681917041332744	-5.22617549307942	down	ENSMUSG00000020087.6	Tysnd1	chr10	protein_coding	trypsin domain containing 1
novel_NIR_1840	chr10	62618071	62619013	-	62616413	62619013	A3SS	ENSMUST00000020268.7	novel	0.04	1	24	1	24	n	0.00	0	21	0	21	n	0.03	1	29	1	29	n	0.05	1	19	1	19	n	0.10	2	19	2	19	n	0.08	2	23	2	23	n	0.11	2	17	2	17	n	0.07	2	25	2	25	n	0.005768690811525	-4.24264068711928	down	ENSMUSG00000020074.8	Ccar1	chr10	protein_coding	cell division cycle and apoptosis regulator 1
novel_NIR_1846	chr10	62855306	62855994	-	62855306	62859499	A5SS	ENSMUST00000020263.14	novel	0.15	5	29	5	29	n	0.00	0	11	0	11	n	0.00	0	16	0	16	n	0.11	1	8	1	8	n	0.17	2	10	2	10	y	0.29	9	22	9	22	n	0.26	5	14	5	14	n	0.11	2	17	2	17	n	0.0450971149435978	-2.52648058091424	down	ENSMUSG00000020069.17	Hnrnph3	chr10	protein_coding	heterogeneous nuclear ribonucleoprotein H3
novel_NIR_2064	chr10	80240120	80240346	-	80240120	80242391	A5SS	ENSMUST00000138428.8	novel	0.44	4	5	4	5	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.20	1	4	1	4	n	-	-	-	-	-	-	0.0470500222325544	3.36851274260999	up	ENSMUSG00000020163.13	Uqcr11	chr10	protein_coding	ubiquinol-cytochrome c reductase, complex III subunit XI
novel_NIR_2132	chr10	82014288	82025821	+	82014288	82028703	A3SS	ENSMUST00000156803.9	novel	-	-	-	-	-	-	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.57	4	3	4	3	y	0.50	4	4	4	4	y	1.00	3	0	3	0	y	0.0129455178057773	-3.77581120524364	down	ENSMUSG00000112110.2	Gm15608	chr10	lncRNA	predicted gene 15608
novel_NIR_2147	chr10	83152653	83162283	-	83152653	83173090	A5SS	ENSMUST00000126617.2	novel	0.73	16	6	16	6	y	0.50	4	4	4	4	y	0.56	5	4	5	4	y	0.80	8	2	8	2	y	1.00	3	0	3	0	y	0.73	8	3	8	3	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.0266125792227731	-2.92211649035079	down	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2149	chr10	83152653	83162481	-	83152653	83158703	5pMXE	ENSMUST00000154926.2	novel	0.82	49	11	49	11	y	0.78	14	4	14	4	y	0.76	29	9	29	9	y	0.67	16	8	16	8	y	1.00	24	0	24	0	y	0.90	43	5	43	5	y	0.90	27	3	27	3	y	0.82	47	10	47	10	y	0.0236399941239526	-3.03329541213327	down	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2151	chr10	83152653	83162481	-	83152653	83173090	A5SS	ENSMUST00000126617.2	novel	0.89	49	6	49	6	y	0.78	14	4	14	4	y	0.88	29	4	29	4	y	0.89	16	2	16	2	y	1.00	24	0	24	0	y	0.93	43	3	43	3	y	1.00	27	0	27	0	y	1.00	47	0	47	0	y	0.0115016253991249	-3.83015157660847	down	ENSMUSG00000034591.6	Slc41a2	chr10	protein_coding	solute carrier family 41, member 2
novel_NIR_2393	chr11	102891182;102916283	102916253;102918086	-	102891182	102918086	cassetteExon	ENSMUST00000155490.3	novel	0.86	18.0	3	0;36	3	n	0.83	5.0	1	0;10	1	n	0.87	27.5	4	1;54	4	n	0.88	15.0	2	2;28	2	y	1.00	23.0	0	0;46	0	n	0.89	39.0	5	0;78	5	n	1.00	25.0	0	1;49	0	n	0.93	25.0	2	3;47	2	y	0.0325201245900367	-3.24261670673488	down	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2396	chr11	102916283	102918086	-	102891182	102918086	A3SS	ENSMUST00000155490.3	novel	0.92	36	3	36	3	n	0.91	10	1	10	1	y	0.93	54	4	54	4	n	0.93	28	2	28	2	n	1.00	46	0	46	0	y	0.94	78	5	78	5	y	1.00	49	0	49	0	n	0.96	47	2	47	2	n	0.0339084102815184	-3.33431358135726	down	ENSMUSG00000020935.9	Dcakd	chr11	protein_coding	dephospho-CoA kinase domain containing
novel_NIR_2527	chr11	113452947	113482608	-	113452950	113482608	A3SS	ENSMUST00000146031.8	novel	0.40	2	3	2	3	y	-	-	-	-	-	-	0.50	3	3	3	3	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.00	0	10	0	10	n	0.0454850406344914	2.69562206612287	up	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
novel_NIR_2606	chr11	115513907	115514698	-	115514418	115514698	A3SS&ES	ENSMUST00000144083.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.67	2	1	2	1	y	1.00	3	0	3	0	y	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.0284807033039106	3.62220482447789	up	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2647	chr11	116494876	116495209	-	116494876	116495204	A5SS	ENSMUST00000103029.10	novel	0.17	4	20	4	20	y	0.10	2	18	2	18	n	0.14	4	25	4	25	n	0.12	2	14	2	14	n	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.00301670718746447	8.87451459775657	up	ENSMUSG00000020806.16	Rhbdf2	chr11	protein_coding	rhomboid 5 homolog 2
novel_NIR_2741	chr11	120418029	120418127	-	120418029	120422259	A5SS	ENSMUST00000148579.2	novel	0.15	2	11	2	11	y	0.00	0	5	0	5	n	0.00	0	24	0	24	n	0.00	0	7	0	7	n	0.25	3	9	3	9	y	0.36	8	14	8	14	y	0.26	6	17	6	17	y	0.17	5	25	5	25	y	0.0062668795405259	-4.11549234758222	down	ENSMUSG00000084983.8	Gm11789	chr11	lncRNA	predicted gene 11789
novel_NIR_2804	chr11	121181716	121185638	+	121181716	121187049	A3SS	ENSMUST00000153579.2	novel	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.033995244717093	-3.71196742483842	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2805	chr11	121181716	121187740	+	121181716;121187177	121187049;121187740	ES	ENSMUST00000153579.2	novel	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	1;1	n	0.00	0	2.0	0	2;2	n	0.00	0	2.0	0	2;2	n	1.00	1	0.0	1	0;0	n	1.00	3	0.0	3	0;0	y	-	-	-	-	-	-	0.50	1	1.0	1	0;2	n	0.0377495513506237	-5	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_3003	chr11	46710871	46730088	+	46710871;46727901	46727855;46730088	ES	ENSMUST00000068877.7	novel	0.09	2	20.0	2	23;17	n	0.17	2	9.5	2	13;6	y	0.22	4	14.5	4	16;13	y	0.26	3	8.5	3	6;11	y	0.00	0	9.5	0	11;8	n	0.12	1	7.5	1	7;8	n	0.00	0	10.5	0	10;11	n	0.00	0	8.0	0	7;9	n	0.0179143718298762	3.27375504871075	up	ENSMUSG00000055546.7	Timd4	chr11	protein_coding	T cell immunoglobulin and mucin domain containing 4
novel_NIR_3014	chr11	48729759	48731065	+	48729759	48736263	A3SS	ENSMUST00000046903.6	novel	0.14	1	6	1	6	n	0.40	4	6	4	6	y	0.18	3	14	3	14	y	0.20	1	4	1	4	n	0.00	0	2	0	2	n	0.15	2	11	2	11	y	0.00	0	8	0	8	n	0.00	0	3	0	3	n	0.0375109605683276	2.78637014358118	up	ENSMUSG00000040350.17	Trim7	chr11	protein_coding	tripartite motif-containing 7
novel_NIR_3032	chr11	49145875	49151398	+	49136444	49151398	A5SS	ENSMUST00000081794.7	novel	0.12	4	28	4	28	n	0.00	0	17	0	17	n	0.00	0	29	0	29	n	0.00	0	10	0	10	n	0.18	3	14	3	14	y	0.37	10	17	10	17	y	0.22	5	18	5	18	y	0.22	4	14	4	14	y	0.00692775517352498	-4.22011987563219	down	ENSMUSG00000020346.17	Mgat1	chr11	protein_coding	mannoside acetylglucosaminyltransferase 1
novel_NIR_3185	chr11	58872162	58872797	+	58872162	58872819	A3SS	ENSMUST00000108809.8	novel	0.12	7	52	7	52	n	0.04	1	23	1	23	n	0.07	4	51	4	51	n	0.15	5	29	5	29	y	0.00	0	39	0	39	n	0.00	0	40	0	40	n	0.00	0	58	0	58	n	0.00	0	40	0	40	n	0.030904835041313	3.85170305687707	up	ENSMUSG00000020455.17	Trim11	chr11	protein_coding	tripartite motif-containing 11
novel_NIR_3258	chr11	59996220	60084765	+	59996220;60031196	60031067;60084765	ES	ENSMUST00000149770.8	novel	0.18	3	14.0	3	16;12	y	0.22	2	7.0	2	14;0	y	0.12	1	7.0	1	13;1	n	0.25	1	3.0	1	4;2	n	0.00	0	6.5	0	11;2	n	0.00	0	14.0	0	15;13	n	0.12	1	7.5	1	13;2	n	0.00	0	7.5	0	13;2	n	0.00757343661643249	3.95333444924293	up	ENSMUSG00000062115.16	Rai1	chr11	protein_coding	retinoic acid induced 1
novel_NIR_3283	chr11	60742784	60746526	+	60742784;60743337	60743245;60746526	ES	ENSMUST00000042281.14	novel	0.05	6	115.5	6	111;120	n	0.05	3	57.0	3	57;57	n	0.06	8	131.5	8	151;112	n	0.02	1	51.0	1	52;50	n	0.11	8	64.0	8	62;66	n	0.16	20	105.0	20	104;106	y	0.09	8	78.0	8	84;72	n	0.11	12	96.5	12	105;88	n	0.00921741906047193	-4.20039958139183	down	ENSMUSG00000042569.14	Dhrs7b	chr11	protein_coding	dehydrogenase/reductase (SDR family) member 7B
novel_NIR_3285	chr11	60756174;60765632	60765541;60766586	-	60756174	60766586	cassetteExon	ENSMUST00000168218.8	novel	0.07	1.5	21	3;0	21	n	0.07	0.5	7	1;0	7	n	0.08	1.5	17	2;1	17	n	0.07	1.0	14	2;0	14	n	0.15	3.0	17	4;2	17	y	0.22	6.0	21	5;7	21	y	0.21	3.5	13	7;0	13	n	0.24	4.0	13	2;6	13	y	0.00588968093033207	-6.78595463644348	down	ENSMUSG00000043284.13	Tmem11	chr11	protein_coding	transmembrane protein 11
novel_NIR_3287	chr11	6100627	6109825	-	6100627	6143154	A5SS	ENSMUST00000066496.10	novel	0.21	11	42	11	42	y	0.10	2	19	2	19	n	0.12	4	28	4	28	n	0.21	6	23	6	23	y	0.00	0	25	0	25	n	0.11	4	33	4	33	n	0.00	0	26	0	26	n	0.08	3	36	3	36	n	0.0321128223794582	2.77834245284135	up	ENSMUSG00000053838.15	Nudcd3	chr11	protein_coding	NudC domain containing 3
novel_NIR_3313	chr11	6216967	6217418	-	6216917	6217418	A3SS	ENSMUST00000151446.2	novel	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.83	5	1	5	1	y	0.0168135637860991	-3.94860298993788	down	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
novel_NIR_3416	chr11	70329217	70329327	+	70329217	70329474	A3SS	ENSMUST00000084954.13	novel	0.13	6	40	6	40	n	0.00	0	27	0	27	n	0.03	2	56	2	56	n	0.05	1	20	1	20	n	0.16	5	27	5	27	y	0.13	7	47	7	47	n	0.14	6	37	6	37	n	0.12	6	42	6	42	n	0.0497303277693906	-2.92264810081239	down	ENSMUSG00000060216.16	Arrb2	chr11	protein_coding	arrestin, beta 2
novel_NIR_3435	chr11	70577267	70578057	-	70577267	70578712	A5SS	ENSMUST00000108545.9	novel	0.23	3	10	3	10	y	0.58	7	5	7	5	y	0.38	3	5	3	5	y	0.20	2	8	2	8	y	0.00	0	12	0	12	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.00	0	6	0	6	n	0.0280520935845438	3.9976212943742	up	ENSMUSG00000040712.17	Camta2	chr11	protein_coding	calmodulin binding transcription activator 2
novel_NIR_3437	chr11	70581378	70581645	-	70581378	70584975	A5SS	ENSMUST00000108543.4	novel	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.0276049022612492	-4.02222641756122	down	ENSMUSG00000057054.12	Inca1	chr11	protein_coding	inhibitor of CDK, cyclin A1 interacting protein 1
novel_NIR_3457	chr11	70909203	70909883	-	70909203	70910217	A5SS	ENSMUST00000171041.8	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.67	2	1	2	1	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.0387968213685622	4.92800147686227	up	ENSMUSG00000018442.14	Derl2	chr11	protein_coding	Der1-like domain family, member 2
novel_NIR_3634	chr11	82671121	82671682	-	82671124	82671682	A3SS	ENSMUST00000152784.8	novel	0.19	4	17	4	17	y	0.23	3	10	3	10	y	0.14	2	12	2	12	n	0.14	2	12	2	12	n	0.08	1	11	1	11	n	0.00	0	18	0	18	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00198247402443928	5.2399563793168	up	ENSMUSG00000085175.8	Gm11423	chr11	lncRNA	predicted gene 11423
novel_NIR_3673	chr11	8443337	8453758	-	8443337	8468199	A5SS	ENSMUST00000239091.2	novel	0.06	1	17	1	17	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.27	4	11	4	11	y	0.30	3	7	3	7	y	0.48	12	13	12	13	y	0.56	5	4	5	4	y	0.52	11	10	11	10	y	0.00447116950638705	-4.44709822520402	down	ENSMUSG00000020422.15	Tns3	chr11	protein_coding	tensin 3
novel_NIR_3715	chr11	86578954	86580385	+	86574949	86580385	A5SS	ENSMUST00000108022.8	novel	0.05	3	54	3	54	n	0.06	3	46	3	46	n	0.06	6	87	6	87	n	0.11	5	41	5	41	n	0.03	1	39	1	39	n	0.00	0	48	0	48	n	0.03	1	38	1	38	n	0.00	0	47	0	47	n	0.0182050573650743	3.4219405926104	up	ENSMUSG00000072582.10	Ptrh2	chr11	protein_coding	peptidyl-tRNA hydrolase 2
novel_NIR_4002	chr12	104304804	104307003	+	104304804	104355323	A3SS	ENSMUST00000101078.12	novel	0.96	363	14	363	14	y	0.97	264	9	264	9	y	0.96	296	12	296	12	y	0.94	267	18	267	18	y	0.97	140	5	140	5	y	0.97	197	7	197	7	y	0.98	127	3	127	3	y	0.99	217	3	217	3	y	0.0474548010379003	-2.5298221281347	down	ENSMUSG00000079012.12	Serpina3m	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3M
novel_NIR_4009	chr12	104373050	104374913	+	104373054	104374913	A5SS	ENSMUST00000021506.6	novel	0.30	3784	8804	3784	8804	y	0.33	3899	8036	3899	8036	y	0.29	2403	5881	2403	5881	y	0.30	3590	8189	3590	8189	y	0.26	601	1700	601	1700	y	0.26	914	2607	914	2607	y	0.26	614	1713	614	1713	y	0.26	889	2492	889	2492	y	0.0138468329888591	5.19615242270663	up	ENSMUSG00000021091.9	Serpina3n	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3N
novel_NIR_4043	chr12	109956012	109958921	-	109958034	109958921	3pMXE	ENSMUST00000222974.2	novel	0.50	1	1	1	1	n	0.20	1	4	1	4	n	0.47	7	8	7	8	y	0.33	3	6	3	6	y	0.00	0	4	0	4	n	0.00	0	7	0	7	n	0.14	1	6	1	6	n	0.33	6	12	6	12	y	0.0491518288458824	2.46852675776862	up	ENSMUSG00000113063.2	Gm34667	chr12	lncRNA	predicted gene, 34667
novel_NIR_4225	chr12	25039835	25040672	+	25039835	25040675	A3SS	ENSMUST00000066652.7	novel	0.48	11	12	11	12	y	0.53	8	7	8	7	y	0.42	11	15	11	15	y	0.24	9	28	9	28	y	0.00	0	11	0	11	n	0.22	8	29	8	29	y	0.11	1	8	1	8	n	0.26	11	31	11	31	y	0.0204257758282161	3.13251899697431	up	ENSMUSG00000036333.12	Kidins220	chr12	protein_coding	kinase D-interacting substrate 220
novel_NIR_4320	chr12	44316084	44329558	+	44316084	44330094	A3SS	ENSMUST00000218954.2	novel	0.23	3	10	3	10	n	0.00	0	6	0	6	n	0.08	2	22	2	22	n	0.20	2	8	2	8	y	0.35	6	11	6	11	y	0.25	5	15	5	15	y	0.30	3	7	3	7	y	0.35	9	17	9	17	y	0.0324304601877044	-3.15920226176502	down	ENSMUSG00000036257.16	Pnpla8	chr12	protein_coding	patatin-like phospholipase domain containing 8
novel_NIR_4370	chr12	52551170	52589272	+	52551170	52589275	A3SS	ENSMUST00000217820.2	novel	0.84	16	3	16	3	y	0.50	3	3	3	3	y	0.54	7	6	7	6	y	0.78	7	2	7	2	y	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.50	7	7	7	7	y	0.0271386792124557	2.94075448677736	up	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4432	chr12	69397740	69399081	-	69395711	69399081	A3SS	ENSMUST00000021368.10	novel	0.11	4	32	4	32	n	0.09	2	21	2	21	n	0.17	4	20	4	20	y	0.06	1	16	1	16	n	0.00	0	27	0	27	n	0.00	0	17	0	17	n	0.00	0	10	0	10	n	0.05	1	18	1	18	n	0.0178876118846568	3.60139693455741	up	ENSMUSG00000020982.10	Nemf	chr12	protein_coding	nuclear export mediator factor
novel_NIR_4477	chr12	71403567	71409011	+	71403567	71477981	A3SS	ENSMUST00000221650.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.40	2	3	2	3	y	0.0256177901443604	-4.13811925973043	down	ENSMUSG00000113441.2	Gm40438	chr12	lncRNA	predicted gene, 40438
novel_NIR_4519	chr12	73327406	73327730	-	73327406	73329386	A5SS	ENSMUST00000220701.2	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.0377495513506237	5	up	ENSMUSG00000034442.12	Trmt5	chr12	protein_coding	TRM5 tRNA methyltransferase 5
novel_NIR_4554	chr12	76624050	76624453	+	76624050	76624449	A3SS	ENSMUST00000075249.6	novel	0.05	3	56	3	56	n	0.04	1	26	1	26	n	0.06	4	59	4	59	n	0.00	0	42	0	42	n	0.11	4	34	4	34	n	0.07	4	52	4	52	n	0.16	7	38	7	38	y	0.11	7	54	7	54	n	0.0187396052506349	-3.3129457822454	down	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
novel_NIR_4666	chr12	84659219	84659554	-	84659224	84659554	A3SS	ENSMUST00000223107.2	novel	0.08	2	22	2	22	n	0.11	1	8	1	8	n	0.17	4	19	4	19	y	0.08	1	11	1	11	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.00	0	11	0	11	n	0.05	1	19	1	19	n	0.0113736186816764	3.95985004402111	up	ENSMUSG00000021240.7	Abcd4	chr12	protein_coding	ATP-binding cassette, sub-family D (ALD), member 4
novel_NIR_4821	chr13	119541290	119545263	-	119541290	119545439	A5SS	ENSMUST00000069902.13	novel	0.09	5	49	5	49	n	0.13	3	20	3	20	n	0.02	1	55	1	55	n	0.09	3	31	3	31	n	0.00	0	34	0	34	n	0.00	0	60	0	60	n	0.00	0	37	0	37	n	0.00	0	40	0	40	n	0.0365613444107952	3.60776055954107	up	ENSMUSG00000025453.19	Nnt	chr13	protein_coding	nicotinamide nucleotide transhydrogenase
novel_NIR_4846	chr13	12619350	12619876	+	12619350	12624457	A3SS	ENSMUST00000220811.2	novel	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.0201389618476639	4.52903909476958	up	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4850	chr13	12619350	12624127	+	12619350	12624457	A3SS	ENSMUST00000220811.2	novel	1.00	10	0	10	0	y	-	-	-	-	-	-	1.00	8	0	8	0	y	1.00	2	0	2	0	y	0.22	2	7	2	7	y	0.80	8	2	8	2	y	0.25	2	6	2	6	y	0.60	3	2	3	2	y	0.0321857714100689	3.79170064322397	up	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4851	chr13	12619350	12632288	+	12619350	12624457	3pMXE	ENSMUST00000220811.2	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.22	2	7	2	7	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.33	1	2	1	2	n	0.00127124053151766	11.9155233885965	up	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_5119	chr13	4557845	4558227	-	4557845	4558167	A5SS	ENSMUST00000080361.13	novel	0.08	31	358	31	358	n	0.07	2	27	2	27	n	0.13	60	406	60	406	n	0.06	5	76	5	76	n	0.12	42	301	42	301	n	0.16	73	380	73	380	y	0.14	57	341	57	341	n	0.20	64	250	64	250	y	0.0233188628936418	-3.03108891324553	down	ENSMUSG00000054757.15	Akr1c20	chr13	protein_coding	aldo-keto reductase family 1, member C20
novel_NIR_5176	chr13	55458354	55459759	+	55458354	55459932	A3SS	ENSMUST00000224973.2	novel	0.06	3	51	3	51	n	0.12	4	30	4	30	n	0.08	3	33	3	33	n	0.00	0	25	0	25	n	0.15	3	17	3	17	y	0.12	5	36	5	36	n	0.16	5	26	5	26	y	0.27	10	27	10	27	y	0.0396644820928855	-2.66789187539966	down	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5239	chr13	63023125	63027195	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.60	12	8	12	8	y	0.50	6	6	6	6	y	0.79	11	3	11	3	y	0.67	4	2	4	2	y	1.00	2	0	2	0	y	0.80	20	5	20	5	n	0.83	5	1	5	1	y	0.78	14	4	14	4	y	0.0373464159511324	-2.6901787616469	down	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5246	chr13	63023125;63027445	63027195;63035465	-	63023125	63035465	cassetteExon	ENSMUST00000134814.2	novel	0.43	6.0	8	12;0	8	n	0.33	3.0	6	6;0	6	n	0.65	5.5	3	11;0	3	n	0.50	2.0	2	4;0	2	n	1.00	1.0	0	2;0	0	n	0.69	11.0	5	20;2	5	y	0.71	2.5	1	5;0	1	n	0.64	7.0	4	14;0	4	n	0.0379682731454563	-2.67660311340123	down	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5295	chr13	64440042	64444942	-	64440042	64456636	A5SS	ENSMUST00000220895.2	novel	0.11	1	8	1	8	n	0.14	1	6	1	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.12	1	7	1	7	n	0.50	5	5	5	5	n	0.0338885710584359	-3.12326345944872	down	ENSMUSG00000021482.11	Prxl2c	chr13	protein_coding	peroxiredoxin like 2C
novel_NIR_5329	chr13	67629964	67631818	-	67629964	67632260	A5SS	ENSMUST00000019572.9	novel	0.25	2	6	2	6	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.75	3	1	3	1	y	0.67	2	1	2	1	y	0.20	1	4	1	4	n	0.0330631436147759	-3.07649462906036	down	ENSMUSG00000059839.10	Zfp874b	chr13	protein_coding	zinc finger protein 874b
novel_NIR_5348	chr13	73476836	73478979	+	73476739	73478979	A5SS	ENSMUST00000221730.2	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.0158076179028352	-4.95164740731644	down	ENSMUSG00000021607.10	Mrpl36	chr13	protein_coding	mitochondrial ribosomal protein L36
novel_NIR_5354	chr13	73912009	73912264	+	73912009	73932638	A3SS	ENSMUST00000017900.9	novel	0.18	11	50	11	50	y	0.00	0	13	0	13	n	0.12	6	42	6	42	n	0.00	0	29	0	29	n	0.33	13	26	13	26	y	0.27	20	53	20	53	y	0.18	6	27	6	27	y	0.23	9	30	9	30	y	0.0209890065565354	-3.22394392522415	down	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
novel_NIR_5399	chr13	81813388	81816710	+	81813388	81817339	A3SS	ENSMUST00000049055.8	novel	0.50	6	6	6	6	y	0.58	11	8	11	8	y	0.83	5	1	5	1	y	0.58	7	5	7	5	y	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.45	5	6	5	6	y	0.40	2	3	2	3	n	0.0475334684169855	2.55829503810591	up	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
novel_NIR_5412	chr13	9052153	9065513	-	9052153	9055509	A5SS&ES	ENSMUST00000221989.2	novel	0.25	1	3	1	3	n	-	-	-	-	-	-	0.22	2	7	2	7	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.09	1	10	1	10	n	0.00	0	16	0	16	n	0.17	3	15	3	15	y	0.0207258833510342	3.90006747579955	up	ENSMUSG00000113543.2	Gm36264	chr13	lncRNA	predicted gene, 36264
novel_NIR_5719	chr14	30902906	30904470	-	30902906	30906899	A5SS	ENSMUST00000168206.8	novel	0.32	17	36	17	36	y	0.33	10	20	10	20	y	0.13	5	33	5	33	n	0.29	9	22	9	22	y	0.00	0	31	0	31	n	0.08	4	45	4	45	n	0.11	4	31	4	31	n	0.05	2	38	2	38	n	0.0134707337200394	3.97649944290626	up	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5720	chr14	30902906;30904593	30904470;30906899	-	30902906	30906899	cassetteExon	ENSMUST00000168206.8	novel	0.19	8.5	36	17;0	36	n	0.20	5.0	20	10;0	20	n	0.07	2.5	33	5;0	33	n	0.17	4.5	22	9;0	22	n	0.00	0.0	31	0;0	31	n	0.04	2.0	45	4;0	45	n	0.06	2.0	31	4;0	31	n	0.03	1.0	38	2;0	38	n	0.017878209742926	3.86526054022555	up	ENSMUSG00000021910.16	Nisch	chr14	protein_coding	nischarin
novel_NIR_5941	chr14	52149003	52149753	-	52149003	52150051	A5SS	ENSMUST00000226184.2	novel	0.27	18	48	18	48	y	0.00	0	3	0	3	n	0.41	18	26	18	26	y	0.29	2	5	2	5	y	0.61	33	21	33	21	y	0.44	41	52	41	52	y	0.49	28	29	28	29	y	0.59	50	35	50	35	y	0.0356234034699685	-3.03516586986597	down	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_6285	chr14	70726030	70727460	-	70724370	70727460	A3SS	ENSMUST00000226906.2	novel	0.05	4	69	4	69	n	0.05	2	37	2	37	n	0.09	5	51	5	51	n	0.06	2	29	2	29	n	0.06	2	31	2	31	n	0.00	0	49	0	49	n	0.00	0	40	0	40	n	0.00	0	49	0	49	n	0.0433744212666113	2.67809361868916	up	ENSMUSG00000022098.11	Bmp1	chr14	protein_coding	bone morphogenetic protein 1
novel_NIR_6301	chr14	75368644	75414255	+	75368644	75435517	A3SS	ENSMUST00000143539.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	7	0	7	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.38	3	5	3	5	y	0.00747674039516293	-11.5	down	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6313	chr14	75369151	75412697	+	75369151	75414255	A3SS	ENSMUST00000125833.8	novel	0.05	1	20	1	20	n	0.18	2	9	2	9	y	0.23	5	17	5	17	y	0.20	2	8	2	8	y	0.38	10	16	10	16	y	0.28	12	31	12	31	y	0.29	7	17	7	17	y	0.26	5	14	5	14	y	0.0328012049781886	-2.87883157424617	down	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6510	chr15	10373954	10376253	+	10373954	10374082	3pMXE	ENSMUST00000110540.8	novel	0.70	66	28	66	28	y	0.79	45	12	45	12	y	0.61	46	29	46	29	y	0.72	55	21	55	21	y	0.57	35	26	35	26	y	0.65	40	22	40	22	y	0.58	29	21	29	21	y	0.49	47	48	47	48	y	0.0371757263797486	2.67804310899153	up	ENSMUSG00000089678.9	Agxt2	chr15	protein_coding	alanine-glyoxylate aminotransferase 2
novel_NIR_6538	chr15	12322042	12343123	+	12322042	12349454	A3SS	ENSMUST00000226517.2	novel	0.30	3	7	3	7	y	0.57	4	3	4	3	y	0.80	4	1	4	1	y	0.80	8	2	8	2	y	0.00	0	5	0	5	n	-	-	-	-	-	-	0.25	2	6	2	6	y	0.33	3	6	3	6	y	0.0409611021197426	2.73699429602853	up	ENSMUSG00000022200.9	Golph3	chr15	protein_coding	golgi phosphoprotein 3
novel_NIR_6569	chr15	3300534	3301492	+	3300534	3302237	A3SS	ENSMUST00000160311.3	novel	0.59	36	25	36	25	y	0.62	10	6	10	6	y	0.63	17	10	17	10	y	0.50	8	8	8	8	y	0.42	10	14	10	14	y	0.56	18	14	18	14	y	0.43	6	8	6	8	y	0.44	20	25	20	25	y	0.0325336281827792	2.7755618017814	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6573	chr15	3300538	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	novel	0.33	5	10	5	10	y	0.33	3	6	3	6	y	0.20	4	16	4	16	y	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.00	0	20	0	20	n	0.0178372523775006	4.73700879632375	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6574	chr15	3300538	3304143	+	3300434	3304143	A5SS	ENSMUST00000159158.9	novel	0.33	5	10	5	10	y	0.60	3	2	3	2	y	0.33	4	8	4	8	y	0.25	1	3	1	3	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.00	0	15	0	15	n	0.0159720270538735	4.93295497890525	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6575	chr15	3300538	3304143	+	3301649	3304143	5pMXE	ENSMUST00000160930.3	novel	0.12	5	37	5	37	n	0.21	3	11	3	11	y	0.13	4	26	4	26	n	0.07	1	13	1	13	n	0.00	0	16	0	16	n	0.00	0	23	0	23	n	0.00	0	23	0	23	n	0.00	0	26	0	26	n	0.0196237454718348	4.57281860291725	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6576	chr15	3300538	3304143	+	3302287	3304143	A5SS&ES	ENSMUST00000160311.3	novel	0.10	5	43	5	43	n	0.23	3	10	3	10	y	0.14	4	25	4	25	n	0.07	1	14	1	14	n	0.00	0	14	0	14	n	0.00	0	32	0	32	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.0302494236237638	3.88365274203161	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6593	chr15	3418195	3487418	-	3418195	3612482	A5SS	ENSMUST00000160343.8	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.12	1	7	1	7	n	0.60	3	2	3	2	y	0.60	3	2	3	2	y	0.028252045736572	-3.98678238447874	down	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6703	chr15	57746942	57755261	-	57746942	57753738	5pMXE	ENSMUST00000226911.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	0.50	1	1	1	1	n	0.50	1	1	1	1	n	0.0164336170136756	-3.29874822131377	down	ENSMUSG00000022365.7	Derl1	chr15	protein_coding	Der1-like domain family, member 1
novel_NIR_6766	chr15	7183766	7183868	+	7159307	7183868	A5SS	ENSMUST00000067190.12	novel	0.03	3	93	3	93	n	0.00	0	25	0	25	n	0.02	1	54	1	54	n	0.11	4	31	4	31	n	0.17	11	54	11	54	n	0.12	13	100	13	100	n	0.17	13	64	13	64	y	0.13	14	94	14	94	n	0.0131060631028242	-3.90909090909091	down	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6813	chr15	75869017	75869454	+	75869017	75869419	A3SS	ENSMUST00000089669.6	novel	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.00	0	13	0	13	n	0.00	0	5	0	5	n	0.15	4	23	4	23	y	0.17	4	20	4	20	y	0.11	3	25	3	25	n	0.11	2	17	2	17	n	0.00289581216186415	-9	down	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
novel_NIR_6919	chr15	78294144	78294243	+	78290944	78294243	A5SS	ENSMUST00000229791.2	novel	0.14	6	37	6	37	n	-	-	-	-	-	-	0.00	0	23	0	23	n	0.00	0	13	0	13	n	0.36	10	18	10	18	y	0.32	9	19	9	19	y	0.35	7	13	7	13	y	0.16	6	31	6	31	y	0.0136030893450398	-3.80282165161167	down	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_6921	chr15	78294144	78294243	+	78291470	78294243	A5SS	ENSMUST00000043865.8	novel	0.30	6	14	6	14	y	0.00	0	3	0	3	n	0.00	0	21	0	21	n	0.00	0	8	0	8	n	0.50	10	10	10	10	y	0.47	9	10	9	10	y	0.41	7	10	7	10	y	0.30	6	14	6	14	y	0.0113390689512896	-3.96394642838784	down	ENSMUSG00000071711.13	Mpst	chr15	protein_coding	mercaptopyruvate sulfurtransferase
novel_NIR_7027	chr15	82287297;82287500	82287402;82287920	-	82287297	82287920	cassetteExon	ENSMUST00000230198.2	novel	0.30	56.5	131	0;113	131	n	0.17	13.5	64	0;27	64	n	0.30	45.0	104	0;90	104	n	0.10	7.0	60	0;14	60	n	0.39	39.0	60	0;78	60	n	0.38	82.5	133	11;154	133	y	0.43	83.0	108	0;166	108	n	0.41	62.5	91	0;125	91	n	0.0307333527357815	-3.63105916919687	down	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7028	chr15	82287500	82287920	-	82287297	82287920	A3SS	ENSMUST00000230198.2	novel	0.46	113	131	113	131	y	0.30	27	64	27	64	y	0.46	90	104	90	104	y	0.19	14	60	14	60	y	0.57	78	60	78	60	y	0.54	154	133	154	133	n	0.61	166	108	166	108	y	0.58	125	91	125	91	y	0.0402487717116763	-3.29328597941602	down	ENSMUSG00000094806.3	Cyp2d10	chr15	protein_coding	cytochrome P450, family 2, subfamily d, polypeptide 10
novel_NIR_7073	chr15	82575807	82577014	-	82575795	82577014	A3SS	ENSMUST00000100380.5	novel	0.24	19	59	19	59	y	0.25	3	9	3	9	y	0.26	22	63	22	63	y	0.38	13	21	13	21	y	0.15	19	106	19	106	y	0.19	27	118	27	118	y	0.19	20	85	20	85	y	0.16	14	71	14	71	y	0.0382523052935641	3.20335513156751	up	ENSMUSG00000075517.6	Cyp2d37-ps	chr15	transcribed_unprocessed_pseudogene	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene
novel_NIR_7119	chr15	85213734	85243655	+	85220781	85243655	5pMXE	ENSMUST00000163242.3	novel	0.10	20	179	20	179	n	0.05	4	83	4	83	n	0.07	9	128	9	128	n	0.00	0	97	0	97	n	0.16	15	76	15	76	y	0.13	18	116	18	116	n	0.15	18	99	18	99	y	0.21	27	103	27	103	y	0.00797790471561185	-3.97535140628081	down	ENSMUSG00000016541.11	Atxn10	chr15	protein_coding	ataxin 10
novel_NIR_7150	chr15	89054820	89064868	-	89054820;89055319	89055270;89064868	ES	ENSMUST00000109331.9	novel	0.11	17	134.5	17	164;105	n	0.02	1	57.5	1	65;50	n	0.04	4	87.5	4	96;79	n	0.10	8	74.5	8	86;63	n	0.15	8	46.0	8	53;39	y	0.23	27	90.0	27	106;74	y	0.11	8	62.0	8	76;48	n	0.14	13	81.0	13	109;53	n	0.0383500608768371	-2.65877620515359	down	ENSMUSG00000036606.18	Plxnb2	chr15	protein_coding	plexin B2
novel_NIR_7181	chr15	90837021	90838527	-	90837021	90840498	A5SS	ENSMUST00000100304.11	novel	0.33	19	39	19	39	y	0.32	18	39	18	39	y	0.37	17	29	17	29	y	0.29	12	29	12	29	y	0.11	5	42	5	42	n	0.19	8	35	8	35	y	0.30	6	14	6	14	y	0.12	5	38	5	38	n	0.0364768642917252	3.15218197275213	up	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7184	chr15	90839602	90840498	-	90835577	90840498	A3SS	ENSMUST00000067205.16	novel	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.25	1	3	1	3	n	0.0426670462610967	3.4	up	ENSMUSG00000022629.18	Kif21a	chr15	protein_coding	kinesin family member 21A
novel_NIR_7195	chr15	9335874	9351186	+	9335874;9338830	9338732;9351186	ES	ENSMUST00000072403.7	novel	0.15	108	604.0	108	554;654	y	0.20	52	210.0	52	190;230	y	0.15	85	481.5	85	439;524	y	0.19	85	370.0	85	324;416	y	0.08	42	477.5	42	453;502	n	0.11	79	632.5	79	581;684	n	0.13	57	382.0	57	353;411	n	0.09	57	568.0	57	513;623	n	0.00697898663358683	4.06981329813668	up	ENSMUSG00000049152.12	Ugt3a2	chr15	protein_coding	UDP glycosyltransferases 3 family, polypeptide A2
novel_NIR_7344	chr16	17199753	17207205	-	17199753;17204193	17204100;17207205	ES	ENSMUST00000036161.12	novel	0.09	3	29.0	3	31;27	n	0.00	0	9.5	0	11;8	n	0.00	0	21.5	0	24;19	n	0.00	0	13.0	0	13;13	n	0.11	2	15.5	2	14;17	n	0.15	4	23.0	4	20;26	y	0.11	1	8.5	1	10;7	n	0.04	1	24.5	1	22;27	n	0.0469358471573462	-2.49371680063743	down	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
novel_NIR_7465	chr16	22739138	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	novel	0.38	8	13	8	13	y	0.00	0	13	0	13	n	0.38	3	5	3	5	y	0.22	4	14	4	14	y	0.54	13	11	13	11	y	0.59	16	11	16	11	y	0.65	13	7	13	7	y	0.79	19	5	19	5	y	0.0131948647393485	-3.78750396779115	down	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7467	chr16	22739138	22747825	+	22740625	22747825	A5SS&ES	ENSMUST00000232097.2	novel	0.14	8	49	8	49	n	0.00	0	32	0	32	n	0.04	3	65	3	65	n	0.09	4	43	4	43	n	0.19	13	56	13	56	y	0.18	16	75	16	75	y	0.23	13	44	13	44	y	0.20	19	74	19	74	y	0.0168346386188254	-4.10947387765176	down	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7759	chr16	45721923	45773739	-	45721923;45727820	45727715;45773739	ES	ENSMUST00000136317.2	novel	0.11	7	55.0	7	47;63	n	0.24	4	12.5	4	9;16	y	0.16	14	74.0	14	73;75	y	0.20	5	20.5	5	17;24	y	0.04	2	54.0	2	42;66	n	0.08	7	84.5	7	60;109	n	0.07	6	75.0	6	70;80	n	0.05	3	63.0	3	52;74	n	0.0191707123849971	4.01548099126878	up	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7776	chr16	45766076	45773578	+	45766076	45768663	3pMXE	ENSMUST00000134359.2	novel	0.29	4	10	4	10	y	0.20	1	4	1	4	n	0.48	14	15	14	15	y	0.29	2	5	2	5	y	0.76	19	6	19	6	y	0.80	45	11	45	11	y	0.75	15	5	15	5	y	0.33	5	10	5	10	y	0.0441094304918015	-2.75413077485679	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7781	chr16	45766076;45773675	45773374;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.11	2.5	19.5	0;5	34;5	n	0.18	1.0	4.5	0;2	9;0	n	0.22	5.0	17.5	0;10	31;4	n	0.14	1.0	6.0	0;2	11;1	n	0.40	8.5	13.0	0;17	23;3	n	0.41	14.5	21.0	0;29	41;1	n	0.48	6.0	6.5	0;12	11;2	n	0.26	3.5	10.0	2;5	19;1	y	0.00944140702960448	-4.33347203836188	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7782	chr16	45766076;45773675	45773377;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.11	2.5	19.5	0;5	34;5	n	0.18	1.0	4.5	0;2	9;0	n	0.22	5.0	17.5	0;10	31;4	n	0.14	1.0	6.0	0;2	11;1	n	0.42	9.5	13.0	2;17	23;3	y	0.46	18.0	21.0	7;29	41;1	y	0.50	6.5	6.5	1;12	11;2	n	0.20	2.5	10.0	0;5	19;1	n	0.0338913607086924	-3.26701475939294	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7783	chr16	45766076;45773675	45773578;45776690	+	45766076;45769153	45768159;45776690	MXE	ENSMUST00000128159.2	novel	0.19	4.5	19.5	4;5	34;5	y	0.25	1.5	4.5	1;2	9;0	n	0.41	12.0	17.5	14;10	31;4	y	0.25	2.0	6.0	2;2	11;1	y	0.58	18.0	13.0	19;17	23;3	y	0.64	37.0	21.0	45;29	41;1	y	0.68	13.5	6.5	15;12	11;2	y	0.33	5.0	10.0	5;5	19;1	y	0.0280193089916213	-3.08271000379566	down	ENSMUSG00000085826.2	Gm15638	chr16	lncRNA	predicted gene 15638
novel_NIR_7842	chr16	59307962	59311568	+	59307962;59309929	59309853;59311568	ES	ENSMUST00000120674.8	novel	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.86	3	0.5	3	0;1	y	-	-	-	-	-	-	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	1;1	n	0.0478274328945332	13.2857142857143	up	ENSMUSG00000022724.16	Riox2	chr16	protein_coding	ribosomal oxygenase 2
novel_NIR_7875	chr16	84628390	84630708	-	84628395	84630708	A3SS	ENSMUST00000114191.8	novel	0.46	100	116	100	116	y	0.31	22	50	22	50	y	0.12	19	144	19	144	n	0.41	28	41	28	41	y	0.21	31	115	31	115	y	0.00	0	160	0	160	n	0.07	9	125	9	125	n	0.09	14	139	14	139	n	0.0457014382758007	2.67614357064589	up	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7912	chr16	86567285;86596022	86595896;86600861	-	86567285	86600861	cassetteExon	ENSMUST00000232333.2	novel	0.38	25.0	41	19;31	41	y	0.39	7.0	11	7;7	11	y	0.45	39.0	48	21;57	48	y	0.48	19.5	21	11;28	21	y	0.57	35.5	27	29;42	27	y	0.48	44.5	49	34;55	49	y	0.51	46.5	44	41;52	44	y	0.52	68.0	63	44;92	63	y	0.0221150145461133	-3.12358075880179	down	ENSMUSG00000116993.2	Gm32461	chr16	lncRNA	predicted gene, 32461
novel_NIR_7976	chr16	93384788	93386978	-	93384788	93386799	A5SS&ES	ENSMUST00000123756.8	novel	0.04	1	22	1	22	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	9	0	9	n	0.06	1	17	1	17	n	0.08	1	11	1	11	n	0.09	3	31	3	31	n	0.11	2	17	2	17	n	0.00203219866981195	-5.19615242270663	down	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_8095	chr17	15651890	15652032	+	15651890	15652029	A3SS	ENSMUST00000055352.8	novel	0.11	6	49	6	49	n	0.19	5	22	5	22	y	0.15	8	47	8	47	y	0.09	3	30	3	30	n	0.06	3	49	3	49	n	0.06	3	45	3	45	n	0.10	6	53	6	53	n	0.03	1	33	1	33	n	0.0394075409754313	2.74432929576283	up	ENSMUSG00000014763.9	Fam120b	chr17	protein_coding	family with sequence similarity 120, member B
novel_NIR_8331	chr17	27854307	27855539	-	27853449	27855539	A3SS	ENSMUST00000114881.9	novel	0.00	0	1	0	1	n	0.00	0	4	0	4	n	0.47	8	9	8	9	y	0.17	1	5	1	5	n	0.75	6	2	6	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.0300520804284862	-4.27995389866979	down	ENSMUSG00000052146.17	Rps10	chr17	protein_coding	ribosomal protein S10
novel_NIR_8585	chr17	35342214	35344209	-	35342214	35345134	A5SS	ENSMUST00000173576.2	novel	0.00	0	10	0	10	n	0.20	1	4	1	4	n	0.18	2	9	2	9	n	0.25	1	3	1	3	n	0.40	2	3	2	3	n	0.25	3	9	3	9	n	0.33	2	4	2	4	n	0.40	4	6	4	6	y	0.0333701708472747	-2.87682389850531	down	ENSMUSG00000092241.2	Gm20522	chr17	lncRNA	predicted gene 20522
novel_NIR_8623	chr17	36220383	36220514	-	36220383	36220526	A5SS	ENSMUST00000140990.8	novel	0.33	4	8	4	8	y	0.33	1	2	1	2	n	0.08	1	11	1	11	n	0.33	1	2	1	2	n	0.00	0	8	0	8	n	0.17	2	10	2	10	y	0.00	0	8	0	8	n	0.00	0	9	0	9	n	0.0288609060384804	2.9769354074503	up	ENSMUSG00000024426.18	Atat1	chr17	protein_coding	alpha tubulin acetyltransferase 1
novel_NIR_8851	chr17	71897517	71905145	-	71897517	71904931	A5SS	ENSMUST00000130952.8	novel	0.46	12	14	12	14	y	0.19	4	17	4	17	y	0.14	4	24	4	24	n	0.08	1	11	1	11	n	0.50	6	6	6	6	y	0.62	8	5	8	5	y	0.42	5	7	5	7	y	0.41	11	16	11	16	y	0.0403694148956387	-2.7854547770258	down	ENSMUSG00000085492.8	Trmt61b	chr17	lncRNA	tRNA methyltransferase 61B
novel_NIR_8880	chr17	74334136	74380738	-	74334136;74375499	74375396;74380738	ES	ENSMUST00000232749.2	novel	0.40	6	9.0	6	1;17	y	0.18	1	4.5	1	3;6	n	0.25	1	3.0	1	2;4	n	0.35	3	5.5	3	2;9	y	0.00	0	5.5	0	2;9	n	0.14	2	12.0	2	4;20	n	0.00	0	6.5	0	1;12	n	0.09	1	10.5	1	2;19	n	0.0095459117227798	3.93225034860599	up	ENSMUSG00000117038.2	Gm49880	chr17	lncRNA	predicted gene, 49880
novel_NIR_8949	chr17	8349131	8349562	-	8349131	8350875	A5SS	ENSMUST00000232307.2	novel	0.00	0	28	0	28	n	0.00	0	12	0	12	n	0.03	1	28	1	28	n	0.00	0	10	0	10	n	0.07	2	25	2	25	n	0.08	3	35	3	35	n	0.06	2	32	2	32	n	0.08	3	36	3	36	n	0.000693517741952284	-7.30536933033721	down	ENSMUSG00000116988.2	Gm49673	chr17	protein_coding	predicted gene, 49673
novel_NIR_8959	chr17	84139824	84142620	-	84139824	84150625	A5SS	ENSMUST00000234214.2	novel	0.98	155	3	155	3	y	1.00	63	0	63	0	y	0.98	186	4	186	4	y	0.97	69	2	69	2	y	0.95	156	8	156	8	y	0.96	201	8	201	8	y	0.94	165	11	165	11	y	0.97	155	4	155	4	y	0.0225060213245261	3.05085107923875	up	ENSMUSG00000000673.10	Haao	chr17	protein_coding	3-hydroxyanthranilate 3,4-dioxygenase
novel_NIR_8977	chr17	84580252	84590964	-	84580252	84617315	A5SS	ENSMUST00000047524.10	novel	0.00	0	13	0	13	n	0.00	0	4	0	4	n	0.00	0	9	0	9	n	0.00	0	9	0	9	n	0.14	1	6	1	6	n	0.31	4	9	4	9	y	0.20	2	8	2	8	y	0.09	1	10	1	10	n	0.0297741003781604	-3.90738505813863	down	ENSMUSG00000024251.11	Thada	chr17	protein_coding	thyroid adenoma associated
novel_NIR_9133	chr18	20999263	21000874	-	20999263	21000817	A5SS	ENSMUST00000225661.3	novel	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.0297024972758426	-2.88894650723368	down	ENSMUSG00000033382.16	Trappc8	chr18	protein_coding	trafficking protein particle complex 8
novel_NIR_9138	chr18	24604037	24606007	+	24604037	24608582	A3SS	ENSMUST00000234303.2	novel	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.83	5	1	5	1	y	-	-	-	-	-	-	0.50	2	2	2	2	y	0.83	5	1	5	1	y	0.50	4	4	4	4	y	0.50	3	3	3	3	y	0.0253978570541568	3.21471612546481	up	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9153	chr18	31768383	31769035	+	31768184	31769035	A5SS	ENSMUST00000234846.2	novel	0.67	2	1	2	1	y	-	-	-	-	-	-	0.75	3	1	3	1	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0488364799442649	-4.35763823521538	down	ENSMUSG00000024260.15	Sap130	chr18	protein_coding	Sin3A associated protein
novel_NIR_9311	chr18	38991801	39014384	-	38991801	39051600	A5SS	ENSMUST00000040647.11	novel	0.57	13	10	13	10	y	0.67	6	3	6	3	y	0.50	7	7	7	7	y	0.81	13	3	13	3	y	0.20	2	8	2	8	y	0.45	5	6	5	6	y	0.30	3	7	3	7	y	0.43	3	4	3	4	y	0.0173270348674108	3.27751237464376	up	ENSMUSG00000036585.17	Fgf1	chr18	protein_coding	fibroblast growth factor 1
novel_NIR_9362	chr18	60345241	60364096	+	60345241	60345628	A3SS&ES	ENSMUST00000031549.6	novel	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.30	3	7	3	7	n	0.38	6	10	6	10	y	0.58	15	11	15	11	y	0.29	4	10	4	10	y	0.51	23	22	23	22	y	0.0132289592864289	-3.48473419468033	down	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9366	chr18	60345241;60350026	60349926;60378447	+	60345241;60345736	60345628;60378447	MXE	ENSMUST00000031549.6	novel	0.23	8.0	26.5	9;7	18;35	y	0.38	5.0	8.0	6;4	8;8	y	0.32	8.0	17.0	7;9	7;27	y	0.32	4.0	8.5	8;0	7;10	n	0.20	4.5	18.0	9;0	10;26	n	0.28	7.5	19.5	9;6	11;28	y	0.20	4.0	16.0	6;2	10;22	y	0.19	5.5	23.5	9;2	22;25	y	0.049236425487183	2.54276849944918	up	ENSMUSG00000073555.2	Gm4951	chr18	protein_coding	predicted gene 4951
novel_NIR_9373	chr18	60515996	60522864	+	60509202	60522864	A5SS	ENSMUST00000066912.13	novel	0.56	5	4	5	4	y	0.50	1	1	1	1	n	0.75	3	1	3	1	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.33	3	6	3	6	y	0.00	0	3	0	3	n	0.00	0	18	0	18	n	0.00570082164041663	4.66145405628934	up	ENSMUSG00000054072.13	Iigp1	chr18	protein_coding	interferon inducible GTPase 1
novel_NIR_9518	chr18	75139054	75141722	+	75138971	75141722	A5SS	ENSMUST00000236421.2	novel	0.26	17	49	17	49	y	0.17	8	39	8	39	y	0.31	26	59	26	59	y	0.29	11	27	11	27	y	0.41	20	29	20	29	y	0.36	29	52	29	52	y	0.38	19	31	19	31	y	0.32	19	40	19	40	y	0.0291506297662922	-3.03628846110636	down	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9519	chr18	75139054	75141722	+	75139085	75141722	A5SS	ENSMUST00000040284.6	novel	0.08	17	204	17	204	n	0.06	8	118	8	118	n	0.12	26	190	26	190	n	0.08	11	120	11	120	n	0.15	20	114	20	114	y	0.13	29	196	29	196	n	0.12	19	145	19	145	n	0.11	19	148	19	148	n	0.0360136101951401	-2.79478278419107	down	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9520	chr18	75139054	75141722	+	75139185	75141722	A5SS	ENSMUST00000237263.2	novel	0.14	17	101	17	101	n	0.12	8	56	8	56	n	0.19	26	110	26	110	y	0.15	11	64	11	64	y	0.23	20	67	20	67	y	0.27	29	80	29	80	y	0.20	19	75	19	75	y	0.24	19	59	19	59	y	0.00619977079958853	-4.12310562561766	down	ENSMUSG00000036299.6	BC031181	chr18	protein_coding	cDNA sequence BC031181
novel_NIR_9551	chr18	80253345	80261919	+	80258791	80261919	5pMXE	ENSMUST00000130675.2	novel	0.82	18	4	18	4	y	1.00	3	0	3	0	y	0.86	25	4	25	4	y	1.00	7	0	7	0	y	0.62	10	6	10	6	y	0.60	12	8	12	8	y	0.71	22	9	22	9	y	0.75	12	4	12	4	y	0.00634882509387256	4.23586871043679	up	ENSMUSG00000057130.13	Txnl4a	chr18	protein_coding	thioredoxin-like 4A
novel_NIR_9618	chr19	10183182	10183788	+	10183488	10183788	A5SS	ENSMUST00000153854.8	novel	0.20	2	8	2	8	y	0.42	5	7	5	7	y	0.50	5	5	5	5	y	0.36	4	7	4	7	y	1.00	2	0	2	0	y	0.85	11	2	11	2	y	1.00	3	0	3	0	y	0.55	6	5	6	5	y	0.0120438927200907	-3.8826853291661	down	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
novel_NIR_9696	chr19	24244763	24247398	-	24244763	24249668	A5SS	ENSMUST00000123684.2	novel	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.0304078948315939	4.59436672356726	up	ENSMUSG00000059363.11	Fxn	chr19	protein_coding	frataxin
novel_NIR_9737	chr19	29104212	29105399	+	29099290	29105399	A5SS	ENSMUST00000064393.6	novel	0.59	298	210	298	210	y	0.76	287	89	287	89	y	0.59	265	183	265	183	y	0.62	176	108	176	108	y	0.47	133	150	133	150	y	0.48	175	191	175	191	y	0.48	156	168	156	168	y	0.51	219	214	219	214	y	0.0288720751876434	3.73196144565884	up	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9738	chr19	29104222	29105399	+	29099290	29105399	A5SS	ENSMUST00000064393.6	novel	0.47	185	210	185	210	y	0.56	112	89	112	89	y	0.40	122	183	122	183	y	0.48	98	108	98	108	y	0.28	57	150	57	150	y	0.34	100	191	100	191	y	0.35	89	168	89	168	y	0.36	121	214	121	214	y	0.013344079874721	3.88106770968559	up	ENSMUSG00000024785.8	Rcl1	chr19	protein_coding	RNA terminal phosphate cyclase-like 1
novel_NIR_9941	chr19	42034549	42047545	+	42034549	42040411	3pMXE	ENSMUST00000168414.2	novel	0.80	4	1	4	1	y	1.00	1	0	1	0	n	0.78	7	2	7	2	y	1.00	3	0	3	0	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.86	6	1	6	1	y	0.50	2	2	2	2	y	0.0445070329675531	2.73461731398643	up	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
novel_NIR_9950	chr19	4209459	4211063	-	4209459	4209565	A5SS&ES	ENSMUST00000130469.8	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00598625569770709	-7	down	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_9972	chr19	44513691	44513915	-	44513686	44513915	A3SS	ENSMUST00000063632.14	novel	0.30	3	7	3	7	y	0.20	2	8	2	8	y	0.27	3	8	3	8	y	0.29	2	5	2	5	y	0.00	0	12	0	12	n	0.00	0	23	0	23	n	0.20	3	12	3	12	y	0.07	1	14	1	14	n	0.0170154171936724	3.77908249855603	up	ENSMUSG00000051984.14	Sec31b	chr19	protein_coding	Sec31 homolog B (S. cerevisiae)
novel_NIR_9984	chr19	4493816	4497325	+	4493816	4494031	A3SS&ES	ENSMUST00000132579.2	novel	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.75	3	1	3	1	y	0.86	6	1	6	1	y	0.0102565087486201	-5.11296839264792	down	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9986	chr19	4493816	4497325	+	4493816;4494066	4494031;4497325	ES	ENSMUST00000154407.8	novel	0.50	1	1.0	1	2;0	n	0.50	1	1.0	1	2;0	n	0.57	2	1.5	2	3;0	y	-	-	-	-	-	-	1.00	3	0.0	3	0;0	y	0.67	3	1.5	3	2;1	y	0.86	3	0.5	3	1;0	y	0.92	6	0.5	6	1;0	y	0.0127477685784168	-4.5799774553156	down	ENSMUSG00000087132.9	A930001C03Rik	chr19	lncRNA	RIKEN cDNA A930001C03 gene
novel_NIR_9992	chr19	44977796;44979403	44979049;44979612	+	44977796	44979612	cassetteExon	ENSMUST00000236662.2	novel	0.09	6.0	63	2;10	63	n	0.00	0.0	16	0;0	16	n	0.06	2.5	37	0;5	37	n	0.07	1.5	20	1;2	20	n	0.23	9.5	31	2;17	31	y	0.09	5.5	56	0;11	56	n	0.21	7.5	29	0;15	29	n	0.26	16.0	46	1;31	46	n	0.0228009158985642	-3.39229629366861	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9993	chr19	44977796;44979403	44979309;44979612	+	44977796	44979612	cassetteExon	ENSMUST00000236662.2	novel	0.09	6.0	63	2;10	63	n	0.00	0.0	16	0;0	16	n	0.10	4.0	37	3;5	37	n	0.07	1.5	20	1;2	20	n	0.24	10.0	31	3;17	31	y	0.15	9.5	56	8;11	56	y	0.27	10.5	29	6;15	29	y	0.26	16.5	46	2;31	46	y	0.00384183262097038	-4.6514257587759	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_9996	chr19	44979403	44979612	+	44977796	44979612	A5SS	ENSMUST00000236662.2	novel	0.14	10	63	10	63	n	0.00	0	16	0	16	n	0.12	5	37	5	37	n	0.09	2	20	2	20	n	0.35	17	31	17	31	n	0.16	11	56	11	56	n	0.34	15	29	15	29	n	0.40	31	46	31	46	n	0.0148508640880761	-3.69274472937998	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
novel_NIR_10034	chr19	46326859	46326959	-	46326869	46326959	A3SS	ENSMUST00000236651.2	novel	0.27	3	8	3	8	y	0.00	0	1	0	1	n	0.43	3	4	3	4	y	0.00	0	8	0	8	n	0.75	6	2	6	2	y	0.25	2	6	2	6	y	0.86	6	1	6	1	y	1.00	3	0	3	0	y	0.0379535420881843	-2.77318399147072	down	ENSMUSG00000036748.17	Cuedc2	chr19	protein_coding	CUE domain containing 2
novel_NIR_10037	chr19	46626135	46632792	+	46612018	46632792	A5SS	ENSMUST00000111855.5	novel	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.27	3	8	3	8	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.0300351571802689	-4.25896785104134	down	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10038	chr19	46626135	46632792	+	46612972	46632792	A5SS	ENSMUST00000156649.2	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	3	3	3	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.0377495513506237	-5	down	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10161	chr19	5731620	5733335	-	5731581	5733335	A3SS	ENSMUST00000145270.8	novel	0.57	4	3	4	3	y	0.33	1	2	1	2	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.00811291782502543	4.24775701021377	up	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10163	chr19	5731620	5733335	-	5731620	5733305	A5SS	ENSMUST00000127876.8	novel	0.27	4	11	4	11	y	0.17	1	5	1	5	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.00	0	6	0	6	n	0.10	1	9	1	9	n	0.00	0	3	0	3	n	0.11	1	8	1	8	n	0.0136598704293118	3.45825233354277	up	ENSMUSG00000054874.13	Pcnx3	chr19	protein_coding	pecanex homolog 3
novel_NIR_10182	chr19	58443026	58443134	-	58443026	58443630	A5SS	ENSMUST00000026076.14	novel	0.02	2	80	2	80	n	0.00	0	55	0	55	n	0.18	10	46	10	46	y	0.09	4	40	4	40	n	0.30	9	21	9	21	y	0.19	13	54	13	54	y	0.24	6	19	6	19	y	0.15	8	47	8	47	y	0.0313926465911935	-2.83535905486006	down	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10184	chr19	58443026	58443134	-	58443026	58443893	A5SS	ENSMUST00000131877.2	novel	0.04	2	44	2	44	n	0.00	0	20	0	20	n	0.26	10	29	10	29	y	0.09	4	42	4	42	n	0.64	9	5	9	5	y	0.52	13	12	13	12	y	0.43	6	8	6	8	y	0.31	8	18	8	18	y	0.00630426785652958	-4.18209281117217	down	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10204	chr19	60209736	60214742	-	60209736	60213297	A5SS&ES	ENSMUST00000237339.2	novel	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.40	2	3	2	3	y	0.00	0	2	0	2	n	0.33	2	4	2	4	y	0.75	6	2	6	2	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.039031480111312	-2.73243951379209	down	ENSMUSG00000057858.9	Fam204a	chr19	protein_coding	family with sequence similarity 204, member A
novel_NIR_10266	chr19	6996210	6996646	-	6996207	6996646	A3SS	ENSMUST00000040772.9	novel	0.25	2	6	2	6	y	0.67	6	3	6	3	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.17	1	5	1	5	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.0124918447626443	3.80470739388497	up	ENSMUSG00000024965.10	Fermt3	chr19	protein_coding	fermitin family member 3
novel_NIR_10432	chr2	120234750	120235454	+	120234750	120236747	A3SS	ENSMUST00000154963.8	novel	0.38	3	5	3	5	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.047244489675358	2.63133205164791	up	ENSMUSG00000062646.13	Ganc	chr2	protein_coding	glucosidase, alpha; neutral C
novel_NIR_10556	chr2	130446546;130470555	130470409;130471836	-	130446546	130471836	cassetteExon	ENSMUST00000028761.5	novel	0.57	6.5	5	6;7	5	y	0.50	2.0	2	1;3	2	n	0.67	4.0	2	0;8	2	n	0.53	4.5	4	3;6	4	y	0.33	2.5	5	1;4	5	n	0.43	4.5	6	0;9	6	n	0.50	2.0	2	1;3	2	n	0.41	3.5	5	4;3	5	y	0.0259113913707413	2.94410202907854	up	ENSMUSG00000027300.11	Ubox5	chr2	protein_coding	U box domain containing 5
novel_NIR_10562	chr2	130477384	130477756	-	130477384	130477693	A5SS	ENSMUST00000089561.10	novel	0.14	8	50	8	50	n	0.13	4	26	4	26	n	0.11	8	66	8	66	n	0.20	10	41	10	41	y	0.11	5	40	5	40	n	0.00	0	63	0	63	n	0.03	1	29	1	29	n	0.06	4	66	4	66	n	0.0214683549265232	3.12358075880179	up	ENSMUSG00000037703.15	Lzts3	chr2	protein_coding	leucine zipper, putative tumor suppressor family member 3
novel_NIR_10742	chr2	154924261	154924747	+	154924261	154938138	A3SS	ENSMUST00000209674.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.60	6	4	6	4	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	0.00433266107747074	15.1428571428571	up	ENSMUSG00000109877.2	Gm45609	chr2	lncRNA	predicted gene 45609
novel_NIR_10844	chr2	160159935	160175831	-	160159935	160169016	5pMXE	ENSMUST00000099127.3	novel	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.00	0	1	0	1	n	0.67	2	1	2	1	y	0.44	4	5	4	5	y	0.67	2	1	2	1	y	0.25	1	3	1	3	n	0.0189667996912167	-3.48920962093566	down	ENSMUSG00000074623.5	Gm826	chr2	protein_coding	predicted gene 826
novel_NIR_11066	chr2	180333841	180342859	-	180333841	180343754	A5SS	ENSMUST00000087517.10	novel	0.00	0	28	0	28	n	0.00	0	5	0	5	n	0.00	0	12	0	12	n	0.00	0	2	0	2	n	0.16	3	16	3	16	y	0.07	1	14	1	14	n	0.14	2	12	2	12	n	0.06	1	17	1	17	n	0.0230376339197881	-4.30718463324745	down	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11067	chr2	180333841	180342859	-	180333841	180351703	A5SS	ENSMUST00000103057.8	novel	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.60	3	2	3	2	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.0398107534200715	-3.48847115952861	down	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11106	chr2	181216830	181222859	-	181216830	181223196	A5SS	ENSMUST00000131949.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	3	3	3	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.013846832988859	5.19615242270663	up	ENSMUSG00000089917.8	Uckl1	chr2	protein_coding	uridine-cytidine kinase 1-like 1
novel_NIR_11124	chr2	181493502	181497095	+	181493502	181496731	A3SS	ENSMUST00000029116.14	novel	0.05	3	62	3	62	n	0.00	0	23	0	23	n	0.16	13	66	13	66	y	0.04	1	22	1	22	n	0.15	9	51	9	51	y	0.14	10	64	10	64	n	0.24	7	22	7	22	y	0.15	13	73	13	73	y	0.0461742837097405	-2.58986023909421	down	ENSMUSG00000027589.15	Pcmtd2	chr2	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2
novel_NIR_11226	chr2	25390898	25392006	+	25390898	25392044	A3SS	ENSMUST00000124258.8	novel	0.67	4	2	4	2	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0254743203594085	4.24216820639093	up	ENSMUSG00000015095.13	Fbxw5	chr2	protein_coding	F-box and WD-40 domain protein 5
novel_NIR_11405	chr2	32269545	32273154	-	32269545	32271694	5pMXE	ENSMUST00000146423.2	novel	0.50	4	4	4	4	y	0.75	3	1	3	1	y	0.67	6	3	6	3	y	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00177393066304628	5.55647116966303	up	ENSMUSG00000039195.5	1110008P14Rik	chr2	protein_coding	RIKEN cDNA 1110008P14 gene
novel_NIR_11482	chr2	34987951	34990577	-	34987951	34990867	A5SS	ENSMUST00000154817.2	novel	0.54	7	6	7	6	y	-	-	-	-	-	-	0.50	9	9	9	9	y	-	-	-	-	-	-	0.00	0	13	0	13	n	0.00	0	18	0	18	n	0.06	1	15	1	15	n	0.44	7	9	7	9	y	0.0314595368978206	3.66353727650533	up	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
novel_NIR_11579	chr2	52040641	52049489	-	52041468	52049489	A3SS&ES	ENSMUST00000135200.2	novel	0.50	3	3	3	3	y	-	-	-	-	-	-	0.29	4	10	4	10	y	0.50	1	1	1	1	n	0.83	5	1	5	1	y	0.88	7	1	7	1	y	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.00803472915514222	-5.41100851022953	down	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
novel_NIR_11620	chr2	5808786	5812242	-	5808786;5809844	5809722;5812242	ES	ENSMUST00000043864.9	novel	0.11	19	158.0	19	149;167	n	0.06	6	97.5	6	114;81	n	0.12	21	153.0	21	175;131	n	0.12	13	93.0	13	86;100	n	0.14	16	96.0	16	95;97	n	0.16	31	167.0	31	168;166	y	0.18	27	125.5	27	132;119	y	0.18	32	142.5	32	132;153	y	0.0140774887804401	-3.62103412188951	down	ENSMUSG00000039128.14	Cdc123	chr2	protein_coding	cell division cycle 123
novel_NIR_11621	chr2	5808786	5812242	-	5809844	5812242	3pMXE	ENSMUST00000138312.8	novel	0.10	19	167	19	167	n	0.07	6	81	6	81	n	0.14	21	131	21	131	n	0.12	13	100	13	100	n	0.14	16	97	16	97	n	0.16	31	166	31	166	y	0.18	27	119	27	119	y	0.17	32	153	32	153	y	0.0256841547760603	-3.19771044853596	down	ENSMUSG00000039128.14	Cdc123	chr2	protein_coding	cell division cycle 123
novel_NIR_11648	chr2	5881812	5884404	-	5881812	5882499	5pMXE	ENSMUST00000132469.8	novel	1.00	1	0	1	0	n	0.67	4	2	4	2	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.0284807033039106	3.62220482447789	up	ENSMUSG00000025816.16	Sec61a2	chr2	protein_coding	Sec61, alpha subunit 2 (S. cerevisiae)
novel_NIR_11777	chr2	76496151	76502041	-	76497786	76502041	A3SS&ES	ENSMUST00000176815.2	novel	0.75	6	2	6	2	y	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.0254739283431626	2.95419578350399	up	ENSMUSG00000002732.15	Fkbp7	chr2	protein_coding	FK506 binding protein 7
novel_NIR_11821	chr2	84681940	84683012	+	84680536	84683012	A5SS	ENSMUST00000121114.8	novel	0.04	1	25	1	25	n	0.06	1	17	1	17	n	0.27	6	16	6	16	y	0.05	1	19	1	19	n	0.30	3	7	3	7	y	0.50	7	7	7	7	y	0.33	3	6	3	6	y	0.17	2	10	2	10	y	0.0472132391960552	-2.51531258209013	down	ENSMUSG00000027075.17	Slc43a1	chr2	protein_coding	solute carrier family 43, member 1
novel_NIR_11867	chr2	90982909	90982997	-	90982909	90984780	A5SS	ENSMUST00000111373.8	novel	0.22	5	18	5	18	y	0.00	0	10	0	10	n	0.11	2	16	2	16	n	0.15	2	11	2	11	y	0.25	3	9	3	9	y	0.29	9	22	9	22	y	0.27	4	11	4	11	y	0.25	3	9	3	9	y	0.0482827320899909	-3.0855720242738	down	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_11889	chr2	91024041	91025484	-	91024041	91033090	A5SS	ENSMUST00000136234.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00506332367381797	14	up	ENSMUSG00000002108.11	Nr1h3	chr2	protein_coding	nuclear receptor subfamily 1, group H, member 3
novel_NIR_11892	chr2	91042959	91047398	-	91042959	91047011	A5SS&ES	ENSMUST00000135927.2	novel	0.17	3	15	3	15	n	0.17	1	5	1	5	n	0.24	4	13	4	13	y	0.25	2	6	2	6	y	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.10	1	9	1	9	n	0.00	0	11	0	11	n	0.00745697642857627	4.14872755173288	up	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
novel_NIR_11894	chr2	91042959	91047398	-	91042959;91047153	91047011;91047398	ES	ENSMUST00000152277.8	novel	0.19	3	12.5	3	15;10	y	0.20	1	4.0	1	5;3	n	0.26	4	11.5	4	13;10	y	0.31	2	4.5	2	6;3	y	0.00	0	11.0	0	7;15	n	0.08	1	12.0	1	8;16	n	0.10	1	9.5	1	9;10	n	0.00	0	9.0	0	11;7	n	0.00229729107644142	5.07736752825213	up	ENSMUSG00000002109.15	Ddb2	chr2	protein_coding	damage specific DNA binding protein 2
novel_NIR_12006	chr3	106455482	106459472	+	106456301	106459472	A5SS&ES	ENSMUST00000151465.2	novel	0.86	6	1	6	1	y	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.0340192109218837	5.28240547622297	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
novel_NIR_12024	chr3	107951744	107952196	-	107951744	107952126	5pMXE	ENSMUST00000106670.2	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00598625569770709	-7	down	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12025	chr3	107951744	107952196	-	107951744	107952161	5pMXE	ENSMUST00000178808.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00598625569770709	-7	down	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12081	chr3	120950165	120952285	-	120950165	120952417	A5SS	ENSMUST00000106466.10	novel	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.11	1	8	1	8	n	0.05	1	19	1	19	n	0.25	2	6	2	6	y	0.24	4	13	4	13	y	0.0456891243706558	-3.30129342275306	down	ENSMUSG00000028133.18	Rwdd3	chr3	protein_coding	RWD domain containing 3
novel_NIR_12202	chr3	135564002	135564569	+	135564002	135589958	A3SS	ENSMUST00000081978.10	novel	0.05	3	58	3	58	n	0.06	1	16	1	16	n	0.07	3	41	3	41	n	0.04	1	26	1	26	n	0.22	5	18	5	18	y	0.19	10	43	10	43	y	0.12	3	23	3	23	n	0.20	11	45	11	45	y	0.00712841766382302	-5.62059544153543	down	ENSMUSG00000053897.16	Slc39a8	chr3	protein_coding	solute carrier family 39 (metal ion transporter), member 8
novel_NIR_12237	chr3	138083326	138087589	+	138079968	138087589	A5SS	ENSMUST00000171054.6	novel	0.19	14	58	14	58	y	0.00	0	42	0	42	n	0.41	41	59	41	59	y	0.01	1	71	1	71	n	0.55	51	42	51	42	n	0.66	75	38	75	38	y	0.71	56	23	56	23	y	0.40	26	39	26	39	y	0.0132975283693608	-3.61437932434096	down	ENSMUSG00000090306.6	Adh6-ps1	chr3	transcribed_unprocessed_pseudogene	alcohol dehydrogenase 6 (class V), pseudogene 1
novel_NIR_12306	chr3	148694989;148704509	148704479;148706607	+	148694989	148706607	cassetteExon	ENSMUST00000196445.2	novel	0.11	1.0	8	1;1	8	n	0.14	0.5	3	0;1	3	n	0.00	0.0	9	0;0	9	n	0.00	0.0	3	0;0	3	n	0.33	0.5	1	1;0	1	n	0.43	4.5	6	4;5	6	y	0.69	4.5	2	4;5	2	y	0.25	2.0	6	1;3	6	n	0.0255223476836078	-3.53798877280011	down	ENSMUSG00000104786.2	Gm43573	chr3	lncRNA	predicted gene 43573
novel_NIR_12352	chr3	157740552	157742153	-	157737703	157742153	A3SS	ENSMUST00000137444.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00598625569770709	7	up	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12357	chr3	16002349;16013648	16013582;16017483	-	16002349	16017483	cassetteExon	ENSMUST00000194367.6	novel	0.36	4.5	8	4;5	8	y	0.20	0.5	2	0;1	2	n	0.33	0.5	1	1;0	1	n	0.43	1.5	2	2;1	2	n	0.08	0.5	6	1;0	6	n	0.14	0.5	3	1;0	3	n	0.04	0.5	12	1;0	12	n	0.00	0.0	5	0;0	5	n	0.00540962889467992	4.67849459637517	up	ENSMUSG00000078780.8	Gm5150	chr3	protein_coding	predicted gene 5150
novel_NIR_12366	chr3	20034897	20036127	+	20035005	20036127	A5SS	ENSMUST00000172605.2	novel	0.67	6	3	6	3	y	0.69	11	5	11	5	y	0.46	6	7	6	7	y	0.47	7	8	7	8	y	-	-	-	-	-	-	-	-	-	-	-	-	0.75	3	1	3	1	y	0.82	9	2	9	2	y	0.0409181407980893	-2.97620312527719	down	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12369	chr3	20043382	20046675	+	20043382	20059631	A3SS	ENSMUST00000108329.8	novel	0.93	171	12	171	12	y	0.93	167	13	167	13	y	0.86	133	21	133	21	y	0.91	118	11	118	11	y	0.81	50	12	50	12	y	0.80	49	12	49	12	y	0.79	52	14	52	14	y	0.86	65	11	65	11	y	0.0065699651428875	4.07768688895708	up	ENSMUSG00000003617.17	Cp	chr3	protein_coding	ceruloplasmin
novel_NIR_12431	chr3	37044037	37048924	+	37044037	37046826	3pMXE	ENSMUST00000211820.2	novel	0.88	14	2	14	2	y	0.85	11	2	11	2	y	0.92	11	1	11	1	y	0.89	8	1	8	1	y	1.00	7	0	7	0	y	1.00	12	0	12	0	y	-	-	-	-	-	-	1.00	10	0	10	0	y	0.00412494988463546	-7.96743371481683	down	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12432	chr3	37044037	37048924	+	37044037;37046876	37046826;37048924	ES	ENSMUST00000057272.15	novel	0.90	14	1.5	14	2;1	y	0.88	11	1.5	11	2;1	y	0.85	11	2.0	11	1;3	y	0.89	8	1.0	8	1;1	y	0.93	7	0.5	7	0;1	y	1.00	12	0.0	12	0;0	y	-	-	-	-	-	-	1.00	10	0.0	10	0;0	y	0.0356803872545513	-3.75958159660256	down	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12436	chr3	37086675	37087414	+	37086675	37087411	A3SS	ENSMUST00000057272.15	novel	0.13	11	73	11	73	n	0.11	4	31	4	31	n	0.13	7	46	7	46	n	0.15	6	35	6	35	y	0.05	1	20	1	20	n	0.03	1	32	1	32	n	0.03	1	36	1	36	n	0.12	5	37	5	37	n	0.0355894062707195	3.17045624929367	up	ENSMUSG00000037270.19	4932438A13Rik	chr3	protein_coding	RIKEN cDNA 4932438A13 gene
novel_NIR_12566	chr3	81903591	81904098	+	81897862	81904098	A5SS	ENSMUST00000142889.2	novel	0.20	1	4	1	4	n	0.50	2	2	2	2	y	0.57	4	3	4	3	y	0.44	4	5	4	5	y	0.00	0	3	0	3	n	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.0241605890874317	2.99575571586575	up	ENSMUSG00000028008.11	Asic5	chr3	protein_coding	acid-sensing (proton-gated) ion channel family member 5
novel_NIR_12598	chr3	85982495;85984044	85983905;85986252	+	85982495	85986252	cassetteExon	ENSMUST00000238545.2	novel	0.00	0.0	7	0;0	7	n	0.00	0.0	3	0;0	3	n	0.00	0.0	13	0;0	13	n	0.09	0.5	5	0;1	5	n	0.08	0.5	6	0;1	6	n	0.22	4.0	14	5;3	14	y	0.14	1.0	6	2;0	6	n	0.08	1.0	12	1;1	12	n	0.0413640538136025	-2.68226630467276	down	ENSMUSG00000028082.15	Sh3d19	chr3	protein_coding	SH3 domain protein D19
novel_NIR_12642	chr3	88323417	88327808	-	88323422	88327808	A3SS	ENSMUST00000193433.6	novel	0.06	7	106	7	106	n	0.03	1	39	1	39	n	0.00	0	105	0	105	n	0.07	5	62	5	62	n	0.11	11	92	11	92	n	0.11	12	94	12	94	n	0.20	20	78	20	78	y	0.15	17	97	17	97	y	0.00982528069864807	-3.85695556037275	down	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
novel_NIR_12659	chr3	88411550;88413827	88413751;88417188	-	88411550	88417188	cassetteExon	ENSMUST00000149068.2	novel	0.47	4.5	5	8;1	5	n	0.50	1.0	1	2;0	1	n	0.33	0.5	1	1;0	1	n	0.40	2.0	3	2;2	3	y	0.27	1.5	4	3;0	4	n	0.14	0.5	3	1;0	3	n	0.00	0.0	3	0;0	3	n	0.33	1.0	2	2;0	2	n	0.0379989756769452	2.90686734313956	up	ENSMUSG00000028063.16	Lmna	chr3	protein_coding	lamin A
novel_NIR_12712	chr3	89299813;89304737	89304580;89305266	+	89299813	89305266	cassetteExon	ENSMUST00000145400.8	novel	0.04	2.0	46	0;4	46	n	0.10	4.0	36	4;4	36	n	0.20	9.0	37	11;7	37	y	0.02	0.5	25	0;1	25	n	0.33	2.5	5	5;0	5	n	0.12	6.0	43	7;5	43	n	0.28	10.0	26	8;12	26	y	0.26	7.0	20	7;7	20	y	0.0408272383249165	-2.60472942637338	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12719	chr3	89303169	89305266	+	89299609	89305266	A5SS	ENSMUST00000152143.2	novel	0.65	11	6	11	6	y	0.27	3	8	3	8	y	0.30	8	19	8	19	y	0.12	1	7	1	7	n	0.75	15	5	15	5	y	0.58	11	8	11	8	y	0.68	15	7	15	7	y	0.78	14	4	14	4	y	0.0407867004893954	-3.00543686062191	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12739	chr3	89905287	89905835	-	89905410	89905835	A3SS	ENSMUST00000199163.2	novel	0.20	3	12	3	12	y	0.00	0	14	0	14	n	0.00	0	2	0	2	n	0.17	2	10	2	10	y	0.56	5	4	5	4	y	0.65	11	6	11	6	y	0.22	2	7	2	7	y	0.71	12	5	12	5	y	0.0190506787104388	-3.62941729991615	down	ENSMUSG00000027944.14	Hax1	chr3	protein_coding	HCLS1 associated X-1
novel_NIR_12869	chr3	97536511	97540443	+	97536511	97536888	3pMXE	ENSMUST00000133017.8	novel	0.10	3	27	3	27	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.17	3	15	3	15	y	0.18	4	18	4	18	y	0.12	2	15	2	15	n	0.22	2	7	2	7	y	0.00645971238163043	-4.14281701143365	down	ENSMUSG00000028088.15	Fmo5	chr3	protein_coding	flavin containing monooxygenase 5
novel_NIR_13028	chr4	108067418	108082441	-	108067418	108075030	5pMXE	ENSMUST00000223127.2	novel	0.15	3	17	3	17	y	0.33	1	2	1	2	n	0.14	1	6	1	6	n	0.29	2	5	2	5	y	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.0181851578299559	4.7034024553687	up	ENSMUSG00000034645.15	Zyg11a	chr4	protein_coding	zyg-11 family member A, cell cycle regulator
novel_NIR_13111	chr4	116567481	116571213	+	116567481	116568508	A3SS&ES	ENSMUST00000030452.13	novel	0.25	5	15	5	15	y	0.00	0	6	0	6	n	0.00	0	17	0	17	n	0.00	0	9	0	9	n	0.58	7	5	7	5	y	0.35	8	15	8	15	y	0.25	2	6	2	6	y	0.18	2	9	2	9	y	0.0454128057190126	-2.58512636483868	down	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13112	chr4	116567481	116571213	+	116570023	116571213	5pMXE	ENSMUST00000134192.2	novel	0.42	5	7	5	7	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	1.00	7	0	7	0	y	1.00	8	0	8	0	y	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.0274917318316199	-3.1120751163159	down	ENSMUSG00000028689.15	Ccdc163	chr4	protein_coding	coiled-coil domain containing 163
novel_NIR_13215	chr4	124743618	124744025	-	124743755	124744025	A3SS	ENSMUST00000163946.2	novel	0.04	7	151	7	151	n	0.04	5	120	5	120	n	0.05	5	103	5	103	n	0.04	4	91	4	91	n	0.09	7	74	7	74	n	0.07	10	127	10	127	n	0.11	16	127	16	127	n	0.07	6	81	6	81	n	0.0178656632502904	-4.29497479743925	down	ENSMUSG00000078570.11	1110065P20Rik	chr4	protein_coding	RIKEN cDNA 1110065P20 gene
novel_NIR_13309	chr4	131663178	131664365	-	131663178	131684954	A5SS	ENSMUST00000146443.8	novel	0.10	3	26	3	26	n	0.09	2	20	2	20	n	0.00	0	22	0	22	n	0.00	0	18	0	18	n	0.10	1	9	1	9	n	0.20	2	8	2	8	y	0.17	2	10	2	10	y	0.12	2	14	2	14	n	0.0324424545612822	-2.79599527477198	down	ENSMUSG00000028906.18	Epb41	chr4	protein_coding	erythrocyte membrane protein band 4.1
novel_NIR_13340	chr4	133393090	133395937	-	133393090	133397049	A5SS	ENSMUST00000062118.11	novel	0.06	1	17	1	17	n	0.25	2	6	2	6	y	0.25	3	9	3	9	y	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	10	0	10	n	0.00	0	6	0	6	n	0.14	1	6	1	6	n	0.0340211585902917	2.78524249529117	up	ENSMUSG00000043257.16	Pigv	chr4	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class V
novel_NIR_13361	chr4	134260063	134262500	-	134260063	134262216	5pMXE	ENSMUST00000154769.8	novel	0.11	1	8	1	8	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.00	0	4	0	4	n	0.29	2	5	2	5	y	0.44	4	5	4	5	y	0.50	2	2	2	2	y	0.43	3	4	3	4	y	0.000992054736187143	-6.1227235408363	down	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
novel_NIR_13440	chr4	140158942	140159106	+	140158942	140159103	A3SS	ENSMUST00000135716.3	novel	0.35	6	11	6	11	y	-	-	-	-	-	-	0.30	3	7	3	7	y	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.0109028267016579	4.26401432711221	up	ENSMUSG00000086437.3	Gm13021	chr4	lncRNA	predicted gene 13021
novel_NIR_13453	chr4	140846092	140862130	-	140846092	140867003	A5SS	ENSMUST00000094549.11	novel	0.02	1	61	1	61	n	0.00	0	27	0	27	n	0.03	1	38	1	38	n	0.03	1	36	1	36	n	0.17	5	24	5	24	y	0.09	6	58	6	58	n	0.14	7	44	7	44	n	0.14	8	49	8	49	n	0.00295464995926004	-6.37905225659013	down	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13454	chr4	140847684	140862130	-	140847684	140867003	A5SS	ENSMUST00000148204.8	novel	0.17	15	73	15	73	y	0.00	0	31	0	31	n	0.20	17	67	17	67	y	0.03	1	37	1	37	n	0.36	21	37	21	37	y	0.42	46	64	46	64	y	0.32	33	70	33	70	y	0.55	51	42	51	42	y	0.00448773052407683	-4.41665783335983	down	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13459	chr4	140969697	140972129	+	140970321	140972129	5pMXE	ENSMUST00000138096.8	novel	0.62	5	3	5	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	1.00	5	0	5	0	y	0.0177207411069677	-3.48075979494177	down	ENSMUSG00000028919.12	Arhgef19	chr4	protein_coding	Rho guanine nucleotide exchange factor (GEF) 19
novel_NIR_13482	chr4	144619945	144620152	+	144619945	144620155	A3SS	ENSMUST00000142808.8	novel	0.13	3	20	3	20	n	0.00	0	3	0	3	n	0.08	2	23	2	23	n	0.00	0	5	0	5	n	0.14	3	18	3	18	n	0.19	4	17	4	17	y	0.29	9	22	9	22	y	0.14	4	25	4	25	n	0.0282232999913969	-2.88410416396454	down	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13489	chr4	144813381	144813695	-	144813400	144813695	A3SS	ENSMUST00000036579.14	novel	0.12	10	73	10	73	n	0.08	2	24	2	24	n	0.12	7	52	7	52	n	0.11	5	42	5	42	n	0.16	6	31	6	31	y	0.20	14	57	14	57	y	0.19	5	22	5	22	y	0.18	11	50	11	50	y	0.00110942629176653	-5.88348405414552	down	ENSMUSG00000020220.17	Vps13d	chr4	protein_coding	vacuolar protein sorting 13D
novel_NIR_13529	chr4	14886682	14893501	+	14886682;14892499	14892393;14893501	ES	ENSMUST00000029875.4	novel	0.08	3	35.0	3	32;38	n	0.00	0	20.5	0	18;23	n	0.00	0	30.5	0	26;35	n	0.11	3	25.5	3	31;20	n	0.16	4	21.0	4	15;27	y	0.29	15	37.5	15	43;32	y	0.12	3	22.5	3	24;21	n	0.16	5	26.5	5	32;21	y	0.0295242831556725	-2.90305798508054	down	ENSMUSG00000028221.4	Pip4p2	chr4	protein_coding	phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
novel_NIR_13531	chr4	149202452	149203536	+	149202380	149203536	A5SS	ENSMUST00000030816.4	novel	0.13	2	13	2	13	n	0.20	1	4	1	4	n	0.04	1	24	1	24	n	0.18	2	9	2	9	y	0.00	0	13	0	13	n	0.00	0	14	0	14	n	0.08	1	12	1	12	n	0.00	0	12	0	12	n	0.0373397541863917	2.87276904615182	up	ENSMUSG00000028974.14	Dffa	chr4	protein_coding	DNA fragmentation factor, alpha subunit
novel_NIR_13639	chr4	155846716	155847827	+	155845743	155847827	A5SS	ENSMUST00000155010.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.62	5	3	5	3	y	0.0193457923295135	-7.08489311533802	down	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13708	chr4	32562009	32565508	-	32562009;32563226	32563063;32565508	ES	ENSMUST00000126225.2	novel	0.00	0	0.5	0	0;1	n	0.00	0	1.0	0	0;2	n	0.00	0	1.0	0	0;2	n	-	-	-	-	-	-	1.00	1	0.0	1	0;0	n	1.00	1	0.0	1	0;0	n	-	-	-	-	-	-	0.67	2	1.0	2	2;0	y	0.0149345014131363	-8.09090909090909	down	ENSMUSG00000086150.2	Bach2os	chr4	lncRNA	BTB and CNC homology 2, opposite strand
novel_NIR_13717	chr4	33030521	33030914	-	33030521	33030857	A5SS	ENSMUST00000155691.2	novel	0.20	4	16	4	16	y	0.25	2	6	2	6	y	0.35	8	15	8	15	y	0.18	3	14	3	14	y	0.00	0	3	0	3	n	0.08	1	11	1	11	n	0.07	1	14	1	14	n	0.14	2	12	2	12	n	0.0125008202497517	3.62489095099752	up	ENSMUSG00000085037.2	4933421O10Rik	chr4	lncRNA	RIKEN cDNA 4933421O10 gene
novel_NIR_13757	chr4	41371849	41378460	+	41371849	41387175	A3SS	ENSMUST00000132235.2	novel	0.50	3	3	3	3	y	0.00	0	5	0	5	n	0.73	8	3	8	3	y	0.00	0	2	0	2	n	1.00	3	0	3	0	y	1.00	8	0	8	0	y	0.62	5	3	5	3	y	0.92	11	1	11	1	y	0.0431131112197669	-2.82190358266829	down	ENSMUSG00000028437.15	Ubap1	chr4	protein_coding	ubiquitin-associated protein 1
novel_NIR_13823	chr4	44066960	44072437	-	44066960	44072830	A5SS	ENSMUST00000128439.8	novel	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.64	7	4	7	4	y	-	-	-	-	-	-	0.00	0	3	0	3	n	0.43	3	4	3	4	y	0.43	3	4	3	4	y	0.67	4	2	4	2	y	0.0427083905080287	2.70379436514438	up	ENSMUSG00000028479.19	Gne	chr4	protein_coding	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
novel_NIR_13832	chr4	44908486	44916184	+	44908486	44925975	A3SS	ENSMUST00000107824.9	novel	0.10	2	19	2	19	n	0.15	2	11	2	11	y	0.15	3	17	3	17	n	0.23	3	10	3	10	y	0.07	1	13	1	13	n	0.00	0	14	0	14	n	0.05	1	21	1	21	n	0.04	1	27	1	27	n	0.0140035075018017	3.83327709718061	up	ENSMUSG00000035649.18	Zcchc7	chr4	protein_coding	zinc finger, CCHC domain containing 7
novel_NIR_13838	chr4	44982241	44982879	+	44981550	44982879	A5SS	ENSMUST00000128973.2	novel	0.85	33	6	33	6	y	0.80	16	4	16	4	y	0.68	17	8	17	8	y	0.76	16	5	16	5	y	0.90	18	2	18	2	y	0.94	33	2	33	2	y	1.00	15	0	15	0	y	0.88	15	2	15	2	y	0.0142034407332786	-3.53101441900555	down	ENSMUSG00000035637.15	Grhpr	chr4	protein_coding	glyoxylate reductase/hydroxypyruvate reductase
novel_NIR_13894	chr4	49490413	49502655	-	49490413;49499838	49499636;49502655	ES	ENSMUST00000043056.9	novel	0.12	79	588.5	79	658;519	n	0.15	43	247.5	43	262;233	y	0.12	58	439.0	58	474;404	n	0.12	38	271.5	38	306;237	n	0.09	39	403.5	39	441;366	n	0.10	61	548.5	61	599;498	n	0.12	50	384.0	50	436;332	n	0.10	58	507.0	58	572;442	n	0.0444277767619925	2.55376959227625	up	ENSMUSG00000039653.10	Baat	chr4	protein_coding	bile acid-Coenzyme A: amino acid N-acyltransferase
novel_NIR_13921	chr4	59333033	59333155	-	59333033	59349826	A5SS	ENSMUST00000040166.14	novel	0.84	51	10	51	10	y	0.90	45	5	45	5	y	0.61	27	17	27	17	y	0.91	52	5	52	5	y	0.40	6	9	6	9	y	0.41	12	17	12	17	y	0.60	9	6	9	6	y	0.72	36	14	36	14	y	0.0358482946083912	2.70198876420228	up	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_13938	chr4	60376559	60537520	-	60376559	60377790	5pMXE	ENSMUST00000132829.3	novel	0.75	75	25	75	25	y	1.00	11	0	11	0	y	0.69	45	20	45	20	y	0.93	14	1	14	1	y	0.47	60	69	60	69	y	0.18	20	93	20	93	y	0.14	13	83	13	83	n	0.62	29	18	29	18	y	0.015455397646204	3.58203787305234	up	ENSMUSG00000078686.12	Mup9	chr4	protein_coding	major urinary protein 9
novel_NIR_14003	chr4	81266927	81267239	-	81266981	81267239	A3SS	ENSMUST00000107262.8	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.25	1	3	1	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.57	4	3	4	3	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.0472778014501495	-3.44823886238029	down	ENSMUSG00000028402.19	Mpdz	chr4	protein_coding	multiple PDZ domain crumbs cell polarity complex component
novel_NIR_14070	chr4	95737913	95759285	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.67	4	2	4	2	y	0.00808087833688157	-6.2996785960256	down	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14074	chr4	95737913	95782661	+	95737913	95790216	A3SS	ENSMUST00000142384.2	novel	0.83	5	1	5	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.40	2	3	2	3	y	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.33	1	2	1	2	n	0.0352513649727994	2.91278263261288	up	ENSMUSG00000028573.19	Fggy	chr4	protein_coding	FGGY carbohydrate kinase domain containing
novel_NIR_14166	chr5	104672162	104673684	+	104672291	104673684	A5SS	ENSMUST00000239420.2	novel	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.80	4	1	4	1	y	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.00763049462062615	4.32650090010508	up	ENSMUSG00000097392.5	Thoc2l	chr5	protein_coding	THO complex subunit 2-like
novel_NIR_14342	chr5	114265830	114268517	-	114265830	114266144	5pMXE	ENSMUST00000112279.2	novel	0.53	8	7	8	7	y	0.25	1	3	1	3	n	0.47	7	8	7	8	y	0.33	3	6	3	6	y	0.13	2	13	2	13	n	0.00	0	6	0	6	n	0.00	0	8	0	8	n	0.25	3	9	3	9	y	0.0142516047402275	3.41881729378914	up	ENSMUSG00000044339.13	Alkbh2	chr5	protein_coding	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
novel_NIR_14346	chr5	114293606	114303570	+	114284886	114303570	A5SS	ENSMUST00000102582.8	novel	0.40	4	6	4	6	y	0.00	0	8	0	8	n	0.00	0	18	0	18	n	0.00	0	14	0	14	n	0.77	10	3	10	3	y	0.75	15	5	15	5	y	0.40	2	3	2	3	y	1.00	12	0	12	0	y	0.0081329069056279	-3.95947210557654	down	ENSMUSG00000042010.17	Acacb	chr5	protein_coding	acetyl-Coenzyme A carboxylase beta
novel_NIR_14359	chr5	115107136;115108096	115108028;115123808	+	115107136	115123808	cassetteExon	ENSMUST00000129609.2	novel	1.00	1.0	0	0;2	0	n	-	-	-	-	-	-	1.00	6.5	0	0;13	0	n	-	-	-	-	-	-	0.71	5.0	2	4;6	2	y	0.81	8.5	2	0;17	2	n	0.78	7.0	2	0;14	2	n	0.64	7.0	4	0;14	4	n	0.00603712370765347	6.97932537276774	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14361	chr5	115108096	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	13	0	13	0	y	-	-	-	-	-	-	0.75	6	2	6	2	n	0.89	17	2	17	2	y	0.88	14	2	14	2	y	0.78	14	4	14	4	y	0.0156800233433926	4.96632958332422	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14368	chr5	115118358	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.50	2	2	2	2	y	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.00598625569770709	7	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14404	chr5	116599923	116600454	+	116599862	116600454	A5SS	ENSMUST00000126959.5	novel	0.11	1	8	1	8	n	0.23	3	10	3	10	y	0.36	9	16	9	16	y	0.18	3	14	3	14	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.0277580623314346	3.13063970737221	up	ENSMUSG00000086219.8	Srrm4os	chr5	lncRNA	serine/arginine repetitive matrix 4, opposite strand
novel_NIR_14483	chr5	122384737	122385983	-	122385680	122385983	A3SS&ES	ENSMUST00000111738.8	novel	0.22	2	7	2	7	y	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.25	1	3	1	3	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.0292942446973154	-3.31632772153933	down	ENSMUSG00000038593.19	Tctn1	chr5	protein_coding	tectonic family member 1
novel_NIR_14578	chr5	125465328	125470149	-	125465328	125466974	5pMXE	ENSMUST00000156249.2	novel	0.25	2	6	2	6	y	0.57	4	3	4	3	y	0.40	4	6	4	6	y	0.62	5	3	5	3	y	0.00	0	5	0	5	n	0.25	2	6	2	6	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.030430667707041	2.82253212875432	up	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
novel_NIR_14680	chr5	137300196	137300388	-	137299909	137300388	A3SS	ENSMUST00000223263.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.0109003161667721	5.66378372448102	up	ENSMUSG00000037364.13	Srrt	chr5	protein_coding	serrate RNA effector molecule homolog (Arabidopsis)
novel_NIR_14842	chr5	146022823	146024181	+	146022660	146024181	A5SS	ENSMUST00000199212.5	novel	0.09	4	39	4	39	n	0.00	0	2	0	2	n	0.03	1	35	1	35	n	0.00	0	4	0	4	n	0.31	30	67	30	67	n	0.14	9	55	9	55	n	0.39	40	63	40	63	n	0.13	10	68	10	68	n	0.0394772202880649	-3.14240596708302	down	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14892	chr5	151330082;151331532	151331465;151347978	+	151330082	151347978	cassetteExon	ENSMUST00000201142.4	novel	0.22	2.0	7	4;0	7	n	-	-	-	-	-	-	0.25	1.0	3	1;1	3	n	-	-	-	-	-	-	0.71	2.5	1	5;0	1	n	0.33	3.5	7	4;3	7	y	0.47	3.5	4	7;0	4	n	0.50	2.0	2	3;1	2	n	0.0398683746437921	-3.34865885999557	down	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14893	chr5	151330082;151331532	151331465;151353540	+	151330082;151351635	151347978;151353540	MXE	ENSMUST00000201142.4	novel	0.18	2.0	9.0	4;0	7;11	n	0.00	0.0	0.5	0;0	0;1	n	0.05	0.5	9.5	1;0	3;16	n	0.00	0.0	5.0	0;0	0;10	n	0.29	2.5	6.0	5;0	1;11	n	0.19	4.0	17.5	4;4	7;28	y	0.39	4.5	7.0	7;2	4;10	y	0.15	2.5	14.5	3;2	2;27	y	0.0297067630951279	-2.88147227704351	down	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14899	chr5	151348046;151349660	151349560;151351553	+	151348046	151351553	cassetteExon	ENSMUST00000201142.4	novel	1.00	1.5	0	1;2	0	n	0.50	1.0	1	1;1	1	n	0.65	5.5	3	6;5	3	y	0.50	1.0	1	1;1	1	n	0.11	0.5	4	1;0	4	n	0.44	8.5	11	6;11	11	y	0.29	2.5	6	3;2	6	y	0.33	3.5	7	4;3	7	y	0.0438002960492126	2.71206047031169	up	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14901	chr5	151349660	151351553	+	151348046	151351553	A5SS	ENSMUST00000201142.4	novel	1.00	2	0	2	0	n	0.50	1	1	1	1	n	0.62	5	3	5	3	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.50	11	11	11	11	n	0.25	2	6	2	6	n	0.30	3	7	3	7	n	0.0471381819610538	2.50259457131589	up	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_15002	chr5	31085223	31085787	+	31082199	31085787	A5SS	ENSMUST00000201571.4	novel	0.07	1	13	1	13	n	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.33	5	10	5	10	y	0.24	4	13	4	13	y	0.10	1	9	1	9	n	0.12	2	14	2	14	n	0.0386364189198909	-3.17578385801686	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15003	chr5	31085223	31085787	+	31084166	31085787	A5SS	ENSMUST00000202752.2	novel	0.12	1	7	1	7	n	0.00	0	5	0	5	n	0.00	0	10	0	10	n	0.00	0	4	0	4	n	0.42	5	7	5	7	y	0.40	4	6	4	6	y	0.09	1	10	1	10	n	0.20	2	8	2	8	y	0.0463855116247541	-2.90215696313464	down	ENSMUSG00000029162.16	Khk	chr5	protein_coding	ketohexokinase
novel_NIR_15270	chr5	73493275	73495874	-	73489543	73495874	A3SS	ENSMUST00000200830.4	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.17	1	5	1	5	n	0.55	6	5	6	5	y	0.0412166296624606	-3.44064356901643	down	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
novel_NIR_15325	chr5	87239705	87240309	-	87239705	87240084	A5SS	ENSMUST00000132667.2	novel	0.09	1	10	1	10	n	0.00	0	1	0	1	n	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.32	6	13	6	13	y	0.30	6	14	6	14	y	0.24	4	13	4	13	y	0.0443567518243179	-2.53538443542654	down	ENSMUSG00000070704.11	Ugt2b36	chr5	protein_coding	UDP glucuronosyltransferase 2 family, polypeptide B36
novel_NIR_15350	chr5	9046547	9048402	-	9046547	9047104	5pMXE	ENSMUST00000003720.5	novel	0.18	101	452	101	452	y	0.29	92	229	92	229	y	0.27	152	421	152	421	y	0.28	91	238	91	238	y	0.09	24	238	24	238	n	0.15	77	420	77	420	y	0.11	29	236	29	236	n	0.17	69	334	69	334	y	0.00862085046728123	4.00320384512718	up	ENSMUSG00000003623.5	Crot	chr5	protein_coding	carnitine O-octanoyltransferase
novel_NIR_15364	chr5	90730012	90732092	+	90729873	90732092	A5SS	ENSMUST00000094615.8	novel	0.11	7	57	7	57	n	0.05	2	39	2	39	n	0.26	13	37	13	37	y	0.00	0	28	0	28	n	0.32	24	51	24	51	y	0.28	38	96	38	96	y	0.34	24	46	24	46	y	0.42	53	74	53	74	y	0.016800143933433	-3.69647366090619	down	ENSMUSG00000070690.8	Albfm1	chr5	protein_coding	albumin superfamily member 1
novel_NIR_15476	chr6	113247662	113254756	+	113247662	113254792	A3SS	ENSMUST00000151149.2	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.22	2	7	2	7	y	0.33	1	2	1	2	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.0138189706904542	-8.41829962611461	down	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
novel_NIR_15529	chr6	116261776	116264943	+	116263573	116264943	5pMXE	ENSMUST00000221069.2	novel	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.0387968213685622	-4.92800147686227	down	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15766	chr6	129210116	129211647	-	129210116	129210848	5pMXE	ENSMUST00000181517.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	0.75	6	2	6	2	y	1.00	3	0	3	0	y	0.67	4	2	4	2	y	0.71	5	2	5	2	y	0.40	2	3	2	3	y	0.33	1	2	1	2	n	0.0277976306630971	3.07496481732572	up	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15791	chr6	133083546	133084827	+	133082568	133084827	A5SS	ENSMUST00000191462.2	novel	0.07	3	40	3	40	n	0.00	0	12	0	12	n	0.00	0	31	0	31	n	0.00	0	18	0	18	n	0.32	8	17	8	17	y	0.34	22	42	22	42	y	0.22	10	36	10	36	y	0.21	10	37	10	37	y	0.00159999210211421	-6.7452607269143	down	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_15806	chr6	135132287	135140987	-	135132287	135145136	A5SS	ENSMUST00000204000.2	novel	0.88	59	8	59	8	y	0.83	20	4	20	4	y	0.87	55	8	55	8	y	0.92	22	2	22	2	y	0.95	60	3	60	3	y	0.93	62	5	62	5	y	0.92	69	6	69	6	y	0.93	57	4	57	4	y	0.0466863942490629	-2.94484823845661	down	ENSMUSG00000042770.9	Hebp1	chr6	protein_coding	heme binding protein 1
novel_NIR_15879	chr6	141578890	141580115	+	141578890	141580110	A3SS	ENSMUST00000042812.9	novel	0.38	11	18	11	18	y	0.38	3	5	3	5	y	0.33	13	26	13	26	y	0.00	0	12	0	12	n	0.62	23	14	23	14	y	0.58	33	24	33	24	y	0.75	12	4	12	4	y	0.49	18	19	18	19	y	0.0256893441536468	-3.17405527136369	down	ENSMUSG00000030236.11	Slco1b2	chr6	protein_coding	solute carrier organic anion transporter family, member 1b2
novel_NIR_15883	chr6	141812736	141813646	+	141812736	141820312	A3SS	ENSMUST00000204491.2	novel	0.67	24	12	24	12	y	0.42	5	7	5	7	y	0.55	11	9	11	9	y	0.60	9	6	9	6	y	0.33	14	29	14	29	y	0.36	14	25	14	25	y	0.31	11	24	11	24	y	0.37	22	38	22	38	y	0.0222093842056612	3.98903542777053	up	ENSMUSG00000107516.2	Gm30784	chr6	lncRNA	predicted gene, 30784
novel_NIR_15884	chr6	141812736	141820477	+	141812736	141820312	A3SS	ENSMUST00000204491.2	novel	0.00	0	12	0	12	n	0.00	0	7	0	7	n	0.00	0	9	0	9	n	0.00	0	6	0	6	n	0.12	4	29	4	29	n	0.11	3	25	3	25	n	0.04	1	24	1	24	n	0.05	2	38	2	38	n	0.029541363360541	-3.91918358845309	down	ENSMUSG00000107516.2	Gm30784	chr6	lncRNA	predicted gene, 30784
novel_NIR_15948	chr6	149072548	149084964	-	149072548	149090104	A5SS	ENSMUST00000204681.3	novel	0.43	3	4	3	4	y	-	-	-	-	-	-	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	6	0	6	n	0.33	2	4	2	4	y	0.14	1	6	1	6	n	0.0165168427874785	4.0585022791928	up	ENSMUSG00000068250.14	Amn1	chr6	protein_coding	antagonist of mitotic exit network 1
novel_NIR_16129	chr6	3989299	3994217	+	3994086	3994217	5pMXE	ENSMUST00000031673.7	novel	1.00	2	0	2	0	y	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.033995244717093	3.71196742483842	up	ENSMUSG00000029663.11	Gngt1	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
novel_NIR_16131	chr6	3992493	3994217	+	3994086	3994217	5pMXE	ENSMUST00000031673.7	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.0244111623352542	4.2143079912816	up	ENSMUSG00000029663.11	Gngt1	chr6	protein_coding	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
novel_NIR_16482	chr6	86415829	86416110	+	86415829	86416106	A3SS	ENSMUST00000143430.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	6	0	6	n	0.00	0	1	0	1	n	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.38	3	5	3	5	y	0.0168221391466116	-4.84014604303461	down	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
novel_NIR_16483	chr6	86415829	86416110	+	86415829	86420709	A3SS	ENSMUST00000141972.8	novel	0.00	0	5	0	5	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.44	4	5	4	5	y	0.13	2	13	2	13	n	0.60	3	2	3	2	y	0.60	3	2	3	2	y	0.0281133893538219	-3.99428806227431	down	ENSMUSG00000046679.17	C87436	chr6	protein_coding	expressed sequence C87436
novel_NIR_16494	chr6	86502853	86504873	+	86504513	86504873	5pMXE	ENSMUST00000181928.4	novel	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	0.0444669140940908	4.58257569495584	up	ENSMUSG00000097048.8	1600020E01Rik	chr6	lncRNA	RIKEN cDNA 1600020E01 gene
novel_NIR_16542	chr6	88710672	88741578	+	88702827	88741578	A5SS	ENSMUST00000113585.9	novel	0.11	21	175	21	175	n	0.29	22	53	22	53	y	0.16	28	145	28	145	y	0.19	20	83	20	83	y	0.06	6	88	6	88	n	0.06	17	252	17	252	n	0.05	8	152	8	152	n	0.01	1	110	1	110	n	0.0277491868157265	3.58355929673301	up	ENSMUSG00000033174.18	Mgll	chr6	protein_coding	monoglyceride lipase
novel_NIR_16559	chr6	90202499	90209669	-	90202449	90209669	A3SS	ENSMUST00000204789.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.40	2	3	2	3	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	0.0350538096087997	-18.1428571428571	down	ENSMUSG00000092247.3	Gm20426	chr6	transcribed_processed_pseudogene	predicted gene 20426
novel_NIR_16650	chr7	100648307	100651919	-	100648307	100660919	A5SS	ENSMUST00000178340.3	novel	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00155781419748203	-11.1212121212121	down	ENSMUSG00000032860.6	P2ry2	chr7	protein_coding	purinergic receptor P2Y, G-protein coupled 2
novel_NIR_16874	chr7	120656622	120675356	+	120656622	120675353	A3SS	ENSMUST00000033163.8	novel	0.27	74	197	74	197	y	0.24	46	146	46	146	y	0.25	58	175	58	175	y	0.26	38	111	38	111	y	0.23	34	116	34	116	y	0.24	64	202	64	202	y	0.23	40	135	40	135	y	0.23	43	142	43	142	y	0.0327788032416223	3.25041803331577	up	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_17360	chr7	19299597	19307234	-	19303807	19307234	A3SS&ES	ENSMUST00000119912.2	novel	0.80	4	1	4	1	y	1.00	4	0	4	0	y	1.00	12	0	12	0	y	1.00	5	0	5	0	y	0.75	3	1	3	1	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.0109498190242838	4.14254924964258	up	ENSMUSG00000044709.7	Gemin7	chr7	protein_coding	gem nuclear organelle associated protein 7
novel_NIR_17367	chr7	19407538	19409437	-	19407538	19415230	A5SS	ENSMUST00000150569.9	novel	0.76	19	6	19	6	y	0.85	11	2	11	2	y	0.78	18	5	18	5	y	0.91	20	2	20	2	y	0.25	3	9	3	9	y	0.00	0	15	0	15	n	0.44	8	10	8	10	y	0.40	8	12	8	12	y	0.00781641061300344	5.24459012212485	up	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17383	chr7	19412743	19415230	-	19407538	19415230	A3SS	ENSMUST00000150569.9	novel	0.68	13	6	13	6	y	0.80	8	2	8	2	y	0.79	19	5	19	5	y	0.82	9	2	9	2	y	0.53	10	9	10	9	y	0.40	10	15	10	15	y	0.64	18	10	18	10	y	0.56	15	12	15	12	n	0.00941019903063672	4.06886822381292	up	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17384	chr7	19412743	19415230	-	19410809	19415230	A3SS	ENSMUST00000127648.4	novel	0.24	13	41	13	41	y	0.42	8	11	8	11	y	0.31	19	42	19	42	y	0.39	9	14	9	14	y	0.21	10	37	10	37	y	0.14	10	59	10	59	n	0.22	18	65	18	65	y	0.24	15	47	15	47	n	0.0341150927753943	2.98425702481982	up	ENSMUSG00000109350.2	Gm44805	chr7	protein_coding	predicted gene 44805
novel_NIR_17414	chr7	23834740	23835408	+	23834740	23835411	A3SS	ENSMUST00000205736.2	novel	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.71	5	2	5	2	y	0.60	3	2	3	2	y	0.80	4	1	4	1	y	0.0161130097393053	-3.7411112299465	down	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17578	chr7	30436784	30437086	+	30436784	30444974	A3SS	ENSMUST00000180820.8	novel	-	-	-	-	-	-	0.78	7	2	7	2	y	0.67	2	1	2	1	y	0.75	3	1	3	1	y	1.00	2	0	2	0	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	1.00	5	0	5	0	y	0.0148201613266951	-8.12276932106895	down	ENSMUSG00000097320.9	Tmem147os	chr7	lncRNA	transmembrane protein 147, opposite strand
novel_NIR_17721	chr7	43106061	43106661	+	43106061	43112561	A3SS	ENSMUST00000203633.3	novel	0.67	2	1	2	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.0221457884124725	-4.37141326972466	down	ENSMUSG00000107482.3	Etfbl	chr7	protein_coding	electron transferring flavoprotein, beta polypeptide like
novel_NIR_17746	chr7	44116269	44116603	+	44116237	44116603	A5SS	ENSMUST00000135624.2	novel	0.51	21	20	21	20	y	0.50	7	7	7	7	y	0.48	15	16	15	16	y	0.53	9	8	9	8	y	0.56	10	8	10	8	y	0.58	25	18	25	18	y	0.55	22	18	22	18	y	0.56	15	12	15	12	y	0.00538685344240848	-4.72780209780997	down	ENSMUSG00000038704.13	Aspdh	chr7	protein_coding	aspartate dehydrogenase domain containing
novel_NIR_17811	chr7	44640905	44641447	+	44636794	44641447	A5SS	ENSMUST00000152595.2	novel	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.0115014593351988	-3.59433567698511	down	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17812	chr7	44640905	44641447	+	44640905	44641018	3pMXE	ENSMUST00000141011.2	novel	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.75	3	1	3	1	y	0.40	4	6	4	6	y	0.0208905282610508	-3.16690764458076	down	ENSMUSG00000087138.2	Gm15545	chr7	lncRNA	predicted gene 15545
novel_NIR_17839	chr7	44796917	44797149	-	44796945	44797149	A3SS	ENSMUST00000211362.2	novel	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.56	5	4	5	4	y	0.037743146268843	-3.12213740458015	down	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
novel_NIR_17874	chr7	45363697	45368677	+	45368004	45368677	5pMXE	ENSMUST00000209287.2	novel	0.00	0	17	0	17	n	0.00	0	8	0	8	n	0.00	0	21	0	21	n	0.00	0	5	0	5	n	0.23	3	10	3	10	y	0.20	2	8	2	8	y	0.08	1	11	1	11	n	0.08	1	11	1	11	n	0.0333681127392673	-3.73897307809442	down	ENSMUSG00000059070.17	Rpl18	chr7	protein_coding	ribosomal protein L18
novel_NIR_17883	chr7	45700120	45701187	+	45700120	45703926	A3SS	ENSMUST00000033121.7	novel	0.08	8	88	8	88	n	0.07	4	54	4	54	n	0.10	7	62	7	62	n	0.07	5	68	5	68	n	0.00	0	41	0	41	n	0.02	1	45	1	45	n	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.000229068606448108	8.66025403784439	up	ENSMUSG00000030835.7	Nomo1	chr7	protein_coding	nodal modulator 1
novel_NIR_17921	chr7	4649939	4660562	-	4649939	4661678	A5SS	ENSMUST00000205374.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.20	1	4	1	4	n	0.67	2	1	2	1	y	1.00	1	0	1	0	n	0.0321841563135666	-3.79177436057791	down	ENSMUSG00000052296.8	Ppp6r1	chr7	protein_coding	protein phosphatase 6, regulatory subunit 1
novel_NIR_18316	chr7	96996132	96996500	+	96981578	96996500	A5SS	ENSMUST00000054107.6	novel	0.59	10	7	10	7	y	0.73	8	3	8	3	n	0.75	9	3	9	3	n	0.71	5	2	5	2	n	0.25	1	3	1	3	n	0.20	1	4	1	4	n	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.000138994059177574	8.67800845719099	up	ENSMUSG00000044952.6	Kctd21	chr7	protein_coding	potassium channel tetramerisation domain containing 21
novel_NIR_18320	chr7	97207433	97224795	-	97207433	97228573	A5SS	ENSMUST00000124552.3	novel	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.86	6	1	6	1	y	1.00	1	0	1	0	n	0.43	3	4	3	4	y	0.75	6	2	6	2	y	0.71	5	2	5	2	y	0.71	5	2	5	2	y	0.0293961688743251	2.95817153258552	up	ENSMUSG00000035642.17	Aamdc	chr7	protein_coding	adipogenesis associated Mth938 domain containing
novel_NIR_18433	chr8	105783163	105783990	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.00	0	44	0	44	n	-	-	-	-	-	-	0.04	2	52	2	52	n	0.00	0	6	0	6	n	0.18	9	42	9	42	y	0.17	11	52	11	52	y	0.22	11	40	11	40	y	0.18	7	32	7	32	y	0.000363573139591121	-10.0438990248432	down	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18450	chr8	106001545	106001649	+	106001545	106001675	A3SS	ENSMUST00000173640.8	novel	0.11	3	24	3	24	n	0.10	1	9	1	9	n	0.14	5	30	5	30	n	0.17	1	5	1	5	n	0.00	0	19	0	19	n	0.00	0	31	0	31	n	0.00	0	21	0	21	n	0.12	4	30	4	30	n	0.0358600608792476	2.94883912309794	up	ENSMUSG00000033249.11	Hsf4	chr8	protein_coding	heat shock transcription factor 4
novel_NIR_18457	chr8	106032639	106033010	+	106032639	106033228	A3SS	ENSMUST00000212046.2	novel	1.00	3	0	3	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.29	2	5	2	5	y	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0103892410940442	9.73427101387576	up	ENSMUSG00000014791.11	Elmo3	chr8	protein_coding	engulfment and cell motility 3
novel_NIR_18459	chr8	106055090	106055222	+	106055090	106055404	A3SS	ENSMUST00000109372.3	novel	0.67	4	2	4	2	n	0.20	2	8	2	8	y	0.60	3	2	3	2	n	0.30	3	7	3	7	y	0.75	3	1	3	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	y	0.90	9	1	9	1	y	0.0174804594705149	-3.66311003041305	down	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18461	chr8	106055090;106055279	106055222;106055404	+	106055090	106055404	cassetteExon	ENSMUST00000109372.3	novel	0.64	3.5	2	4;3	2	y	0.11	1.0	8	2;0	8	n	0.56	2.5	2	3;2	2	y	0.18	1.5	7	3;0	7	n	0.67	2.0	1	3;1	1	n	1.00	8.0	0	12;4	0	y	1.00	4.0	0	8;0	0	n	0.82	4.5	1	9;0	1	n	0.0240465980314837	-3.22217614410683	down	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18477	chr8	106427998	106428806	+	106428435	106428806	5pMXE	ENSMUST00000093195.7	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	5	up	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
novel_NIR_18525	chr8	110304194	110310024	-	110304194	110305089	5pMXE	ENSMUST00000212018.2	novel	0.09	15	158	15	158	n	0.16	49	267	49	267	y	0.14	23	137	23	137	n	0.21	46	170	46	170	y	0.00	0	39	0	39	n	0.07	4	51	4	51	n	0.03	1	34	1	34	n	0.00	0	56	0	56	n	0.00779712575007002	4.18609179139461	up	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18526	chr8	110304194	110310024	-	110304194	110305582	5pMXE	ENSMUST00000212918.2	novel	0.20	15	61	15	61	y	0.40	49	72	49	72	y	0.32	23	48	23	48	y	0.55	46	38	46	38	y	0.00	0	16	0	16	n	0.13	4	26	4	26	n	0.06	1	16	1	16	n	0.00	0	9	0	9	n	0.0156537192333478	4.01703529411547	up	ENSMUSG00000031722.11	Hp	chr8	protein_coding	haptoglobin
novel_NIR_18544	chr8	111760540	111760839	+	111760540	111763541	A3SS	ENSMUST00000125268.2	novel	0.07	2	28	2	28	n	0.43	3	4	3	4	y	0.24	5	16	5	16	y	0.29	4	10	4	10	y	0.00	0	11	0	11	n	0.00	0	18	0	18	n	0.00	0	8	0	8	n	0.10	2	18	2	18	n	0.0460459621402145	2.96523399981687	up	ENSMUSG00000031960.15	Aars	chr8	protein_coding	alanyl-tRNA synthetase
novel_NIR_18618	chr8	118429002	118434960	+	118429002;118434429	118434139;118434960	ES	ENSMUST00000212052.2	novel	0.33	1	2.0	1	0;4	n	0.00	0	0.5	0	0;1	n	0.44	2	2.5	2	3;2	y	0.00	0	2.0	0	4;0	n	0.43	5	6.5	5	3;10	y	0.53	4	3.5	4	3;4	y	0.71	6	2.5	6	3;2	y	0.80	8	2.0	8	3;1	y	0.0261583035325426	-3.01179935289883	down	ENSMUSG00000031844.9	Hsd17b2	chr8	protein_coding	hydroxysteroid (17-beta) dehydrogenase 2
novel_NIR_18655	chr8	122730829	122732291	+	122727870	122732291	A5SS	ENSMUST00000093078.13	novel	0.20	9	35	9	35	y	0.00	0	16	0	16	n	0.09	2	21	2	21	n	0.05	1	18	1	18	n	0.26	6	17	6	17	y	0.28	5	13	5	13	y	0.46	11	13	11	13	y	0.40	12	18	12	18	y	0.00630755966309374	-4.13440519156413	down	ENSMUSG00000025316.17	Banp	chr8	protein_coding	BTG3 associated nuclear protein
novel_NIR_18701	chr8	124474767	124480797	-	124474732	124480797	A3SS	ENSMUST00000181805.3	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.12	1	7	1	7	n	0.12	1	7	1	7	n	0.10	1	9	1	9	n	0.23	5	17	5	17	y	0.0169843979096467	-4.82312448864173	down	ENSMUSG00000097203.3	4732419C18Rik	chr8	lncRNA	RIKEN cDNA 4732419C18 gene
novel_NIR_18711	chr8	125417098	125419333	-	125417098	125436642	A5SS	ENSMUST00000231984.2	novel	0.27	3	8	3	8	y	0.20	1	4	1	4	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00198907026338084	10.2336343850693	up	ENSMUSG00000037300.20	Ttc13	chr8	protein_coding	tetratricopeptide repeat domain 13
novel_NIR_18760	chr8	13419580	13420172	+	13419580	13420481	A3SS	ENSMUST00000209885.2	novel	0.13	8	55	8	55	n	0.05	2	35	2	35	n	0.10	4	37	4	37	n	0.06	2	30	2	30	n	0.03	1	36	1	36	n	0.02	1	57	1	57	n	0.03	1	37	1	37	n	0.02	1	43	1	43	n	0.0458990051005518	3.20713490294909	up	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_19225	chr8	71216524	71216721	-	71216524	71217192	A5SS	ENSMUST00000222087.4	novel	0.37	52	88	52	88	y	0.20	14	56	14	56	y	0.37	51	86	51	86	y	0.38	21	35	21	35	y	0.62	53	33	53	33	y	0.77	88	26	88	26	y	0.60	55	37	55	37	y	0.71	53	22	53	22	y	0.00111592151361792	-5.86658908309415	down	ENSMUSG00000031838.11	Ifi30	chr8	protein_coding	interferon gamma inducible protein 30
novel_NIR_19228	chr8	71246686	71249357	-	71242729	71249357	A3SS	ENSMUST00000166004.3	novel	0.24	6	19	6	19	y	0.14	1	6	1	6	n	0.19	3	13	3	13	y	0.00	0	8	0	8	n	0.62	10	6	10	6	y	0.54	14	12	14	12	y	0.43	6	8	6	8	y	0.62	15	9	15	9	y	0.00104883171567825	-5.98311733047578	down	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
novel_NIR_19309	chr8	80438473	80439782	+	80438473	80439734	A3SS	ENSMUST00000048147.9	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.60	3	2	3	2	y	0.00	0	2	0	2	n	1.00	4	0	4	0	y	0.89	8	1	8	1	y	0.50	2	2	2	2	y	1.00	3	0	3	0	y	0.0117678307191507	-3.64640984141085	down	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19310	chr8	80438473	80439782	+	80438603	80439782	5pMXE	ENSMUST00000210812.2	novel	0.00	0	14	0	14	n	0.00	0	4	0	4	n	0.25	3	9	3	9	y	0.00	0	1	0	1	n	0.80	4	1	4	1	y	0.80	8	2	8	2	y	0.40	2	3	2	3	y	0.38	3	5	3	5	y	0.0127529478939012	-3.97662216911727	down	ENSMUSG00000036977.9	Anapc10	chr8	protein_coding	anaphase promoting complex subunit 10
novel_NIR_19360	chr8	85594277	85594348	+	85594277	85594382	A3SS	ENSMUST00000109754.2	novel	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.60	3	2	3	2	y	1.00	1	0	1	0	n	0.20	1	4	1	4	n	1.00	2	0	2	0	y	0.0353528470025174	-3.65563077506965	down	ENSMUSG00000003808.19	Farsa	chr8	protein_coding	phenylalanyl-tRNA synthetase, alpha subunit
novel_NIR_19401	chr8	86750967	86751827	+	86750967	86753086	A3SS	ENSMUST00000053771.14	novel	0.13	4	26	4	26	n	0.00	0	14	0	14	n	0.22	6	21	6	21	n	0.16	3	16	3	16	y	0.50	6	6	6	6	y	0.27	6	16	6	16	y	0.43	3	4	3	4	y	0.38	8	13	8	13	y	0.00723728186192916	-3.98857794869327	down	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19457	chr8	94899666	94899755	+	94899580	94899755	A5SS	ENSMUST00000212806.2	novel	0.50	6	6	6	6	y	0.48	10	11	10	11	y	0.11	1	8	1	8	n	0.31	5	11	5	11	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.0431672013815117	2.74397736228014	up	ENSMUSG00000031762.8	Mt2	chr8	protein_coding	metallothionein 2
novel_NIR_19479	chr8	95348653	95349462	+	95328732	95349462	A5SS	ENSMUST00000211983.2	novel	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.0227934027821776	4.32444970669798	up	ENSMUSG00000050079.11	Rspry1	chr8	protein_coding	ring finger and SPRY domain containing 1
novel_NIR_19529	chr9	103105267	103120646	-	103105267	103105528	5pMXE	ENSMUST00000126359.2	novel	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.10	1	9	1	9	n	0.77	10	3	10	3	y	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.0450429070344772	3.32033235866161	up	ENSMUSG00000032554.16	Trf	chr9	protein_coding	transferrin
novel_NIR_19566	chr9	106123478	106123958	-	106120591	106123958	A3SS	ENSMUST00000133617.3	novel	1.00	8	0	8	0	y	1.00	3	0	3	0	y	0.75	6	2	6	2	y	1.00	1	0	1	0	n	0.57	4	3	4	3	y	0.45	5	6	5	6	y	0.50	1	1	1	1	n	0.53	8	7	8	7	y	0.00335822525854121	6.30350607341649	up	ENSMUSG00000032786.17	Alas1	chr9	protein_coding	aminolevulinic acid synthase 1
novel_NIR_19602	chr9	106741746	106747402	-	106715656	106747402	A3SS	ENSMUST00000159620.9	novel	0.60	3	2	3	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	3	0	3	0	y	0.0201389618476639	-4.52903909476958	down	ENSMUSG00000032575.17	Manf	chr9	protein_coding	mesencephalic astrocyte-derived neurotrophic factor
novel_NIR_19611	chr9	107213862	107214238	-	107213862	107214200	A5SS	ENSMUST00000035196.14	novel	0.08	3	36	3	36	n	0.05	1	20	1	20	n	0.08	3	36	3	36	n	0.09	2	21	2	21	n	0.00	0	31	0	31	n	0.02	1	50	1	50	n	0.04	1	26	1	26	n	0.02	1	42	1	42	n	0.00364400293266409	4.62092427729243	up	ENSMUSG00000032579.15	Hemk1	chr9	protein_coding	HemK methyltransferase family member 1
novel_NIR_19636	chr9	107458535	107460016	+	107456169	107460016	A5SS	ENSMUST00000127380.8	novel	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	7	0	7	n	0.33	1	2	1	2	n	-	-	-	-	-	-	1.00	5	0	5	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.00155781419748203	-11.1212121212121	down	ENSMUSG00000079334.9	Naa80	chr9	protein_coding	N(alpha)-acetyltransferase 80, NatH catalytic subunit
novel_NIR_19642	chr9	107532632	107532784	-	107532666	107532784	A3SS	ENSMUST00000192211.2	novel	0.69	40	18	40	18	y	0.77	10	3	10	3	y	0.68	54	26	54	26	y	0.70	28	12	28	12	y	0.80	39	10	39	10	y	0.72	47	18	47	18	y	0.81	34	8	34	8	y	0.84	68	13	68	13	y	0.0473145651080684	-2.51866816400818	down	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19652	chr9	107536443	107541905	-	107536443	107545914	A5SS	ENSMUST00000192990.6	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.33	1	2	1	2	n	0.07	1	14	1	14	n	0.0387038411140691	3.71523936423603	up	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19738	chr9	109662363	109664391	+	109662363	109668676	A3SS	ENSMUST00000200091.5	novel	0.15	2	11	2	11	y	0.41	7	10	7	10	y	0.29	4	10	4	10	y	0.20	3	12	3	12	y	0.00	0	4	0	4	n	0.07	1	14	1	14	n	0.00	0	8	0	8	n	0.22	2	7	2	7	y	0.0492142276022539	2.46403705866798	up	ENSMUSG00000032478.15	Nme6	chr9	protein_coding	NME/NM23 nucleoside diphosphate kinase 6
novel_NIR_19787	chr9	110996312	110999324	+	110996312	111017830	A3SS	ENSMUST00000035078.13	novel	0.44	12	15	12	15	y	0.33	2	4	2	4	y	0.53	21	19	21	19	y	0.50	12	12	12	12	y	0.14	2	12	2	12	n	0.39	9	14	9	14	y	0.03	1	30	1	30	n	0.19	5	22	5	22	y	0.0310895387956446	3.00655201435655	up	ENSMUSG00000032497.20	Lrrfip2	chr9	protein_coding	leucine rich repeat (in FLII) interacting protein 2
novel_NIR_19819	chr9	114439790	114442692	-	114439793	114442692	A3SS	ENSMUST00000070117.8	novel	0.29	11	27	11	27	y	0.20	3	12	3	12	y	0.24	10	32	10	32	y	0.44	7	9	7	9	y	0.00	0	27	0	27	n	0.19	8	35	8	35	y	0.11	4	34	4	34	n	0.18	8	37	8	37	y	0.0463313780655226	2.52345219242495	up	ENSMUSG00000056167.9	Cnot10	chr9	protein_coding	CCR4-NOT transcription complex, subunit 10
novel_NIR_19880	chr9	121289580	121295973	+	121289643	121295973	A5SS	ENSMUST00000211301.2	novel	0.11	2	16	2	16	n	0.20	2	8	2	8	y	0.26	5	14	5	14	y	0.20	3	12	3	12	y	0.00	0	6	0	6	n	0.12	3	23	3	23	n	0.08	1	11	1	11	n	0.00	0	5	0	5	n	0.0162777204019089	3.30747546315826	up	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
novel_NIR_19899	chr9	121681671	121686578	-	121685938	121686578	A3SS&ES	ENSMUST00000213147.2	novel	0.86	37	6	37	6	y	0.83	10	2	10	2	y	0.81	50	12	50	12	y	0.94	17	1	17	1	y	1.00	34	0	34	0	y	0.94	45	3	45	3	y	0.92	46	4	46	4	y	0.98	46	1	46	1	y	0.0311745438498154	-2.94883912309794	down	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
novel_NIR_19944	chr9	124201170	124201277	+	124201025	124201277	A5SS	ENSMUST00000216394.2	novel	0.40	4	6	4	6	y	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.50	3	3	3	3	y	1.00	6	0	6	0	y	0.0295102519455809	-3.1846690864247	down	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_20119	chr9	34966945	34967715	-	34966945	35010195	A5SS	ENSMUST00000214526.2	novel	1.00	13	0	13	0	y	1.00	2	0	2	0	y	0.90	9	1	9	1	y	0.75	3	1	3	1	y	0.62	5	3	5	3	y	0.43	3	4	3	4	y	0.57	4	3	4	3	y	0.75	6	2	6	2	y	0.0114917182415202	3.60885679638145	up	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20131	chr9	34966945	35027315	-	34966945	35010195	5pMXE	ENSMUST00000214526.2	novel	1.00	23	0	23	0	y	1.00	17	0	17	0	y	0.96	22	1	22	1	y	0.93	13	1	13	1	y	0.80	12	3	12	3	y	0.79	15	4	15	4	y	0.82	14	3	14	3	y	0.93	25	2	25	2	y	0.0155272810042695	3.76853790405143	up	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20284	chr9	46145838	46145949	-	46145838	46146557	A5SS	ENSMUST00000214729.2	novel	0.28	49	127	49	127	n	0.29	17	42	17	42	y	0.34	56	111	56	111	y	0.31	29	65	29	65	y	0.14	27	162	27	162	n	0.22	66	235	66	235	n	0.23	56	183	56	183	y	0.17	39	189	39	189	n	0.00576339066227009	4.6	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20286	chr9	46145838;46146016	46145949;46146557	-	46145838	46146557	cassetteExon	ENSMUST00000214729.2	novel	0.17	25.5	127	49;2	127	y	0.17	8.5	42	17;0	42	n	0.20	28.0	111	56;0	111	n	0.18	14.5	65	29;0	65	n	0.08	13.5	162	27;0	162	n	0.12	33.0	235	66;0	235	n	0.13	28.0	183	56;0	183	n	0.10	21.0	189	39;3	189	n	0.00253335432411659	5.51340097956296	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
novel_NIR_20437	chr9	57046992	57047138	+	57046992	57047154	A3SS	ENSMUST00000160147.8	novel	0.03	2	57	2	57	n	0.06	1	17	1	17	n	0.02	1	42	1	42	n	0.05	1	21	1	21	n	0.00	0	36	0	36	n	0.00	0	50	0	50	n	0.03	1	31	1	31	n	0.00	0	41	0	41	n	0.0345486933283661	2.75084790184853	up	ENSMUSG00000032295.16	Man2c1	chr9	protein_coding	mannosidase, alpha, class 2C, member 1
novel_NIR_20493	chr9	62252275	62279002	+	62274625	62279002	5pMXE	ENSMUST00000136603.8	novel	1.00	10	0	10	0	y	-	-	-	-	-	-	0.92	12	1	12	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.0265104892265423	24	up	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
novel_NIR_20570	chr9	69255499	69269032	+	69255499	69269021	A3SS	ENSMUST00000034766.14	novel	0.12	6	42	6	42	n	0.08	2	24	2	24	n	0.16	5	27	5	27	y	0.05	1	19	1	19	n	0.00	0	17	0	17	n	0.00	0	28	0	28	n	0.00	0	10	0	10	n	0.08	2	22	2	22	n	0.0394383202664522	2.64494184146906	up	ENSMUSG00000032238.18	Rora	chr9	protein_coding	RAR-related orphan receptor alpha
novel_NIR_20592	chr9	69924205	69924426	+	69924205	69924355	A3SS	ENSMUST00000140265.8	novel	0.46	6	7	6	7	y	0.33	3	6	3	6	y	0.41	7	10	7	10	y	0.67	4	2	4	2	y	0.33	3	6	3	6	y	0.32	7	15	7	15	y	0.00	0	12	0	12	n	0.14	2	12	2	12	n	0.0457826483901626	2.51639574729478	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
novel_NIR_20607	chr9	70727824	70728133	-	70727824	70730655	A5SS	ENSMUST00000034731.10	novel	0.15	19	108	19	108	y	0.20	3	12	3	12	y	0.16	23	119	23	119	y	0.18	4	18	4	18	y	0.22	48	175	48	175	y	0.24	85	263	85	263	y	0.22	64	222	64	222	y	0.20	49	192	49	192	y	0.0155972696404602	-3.44979693621217	down	ENSMUSG00000032207.11	Lipc	chr9	protein_coding	lipase, hepatic
novel_NIR_20673	chr9	77834679	77864423	+	77829303	77864423	A5SS	ENSMUST00000133757.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
novel_NIR_20844	chr9	98179033	98236075	+	98178785	98236075	A5SS	ENSMUST00000112938.8	novel	1.00	4	0	4	0	y	1.00	1	0	1	0	n	1.00	6	0	6	0	y	1.00	3	0	3	0	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.0387968213685622	4.92800147686227	up	ENSMUSG00000032456.14	Nmnat3	chr9	protein_coding	nicotinamide nucleotide adenylyltransferase 3
novel_NIR_21025	chrX	150706557	150707658	+	150706602	150707658	A5SS	ENSMUST00000026292.15	novel	0.42	77	108	77	108	y	0.34	26	50	26	50	y	0.43	54	72	54	72	y	0.41	32	46	32	46	y	0.52	60	55	60	55	y	0.49	78	80	78	80	y	0.43	49	64	49	64	y	0.45	63	78	63	78	y	0.0448478849422055	-2.52731908791745	down	ENSMUSG00000025261.19	Huwe1	chrX	protein_coding	HECT, UBA and WWE domain containing 1
novel_NIR_21079	chrX	16637258	16681490	-	16637258;16673955	16673774;16681490	ES	ENSMUST00000173143.2	novel	0.57	2	1.5	2	3;0	y	0.00	0	2.0	0	4;0	n	0.00	0	0.5	0	1;0	n	0.00	0	1.0	0	2;0	n	1.00	3	0.0	3	0;0	y	0.67	4	2.0	4	4;0	y	0.75	3	1.0	3	1;1	y	0.75	6	2.0	6	4;0	y	0.0123322263843532	-4.07478799045855	down	ENSMUSG00000040147.15	Maob	chrX	protein_coding	monoamine oxidase B
novel_NIR_21177	chrX	48169628	48257509	-	48169628	48375722	A5SS	ENSMUST00000155770.8	novel	0.40	2	3	2	3	y	0.67	2	1	2	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.0232423089284126	6.44444444444444	up	ENSMUSG00000031109.17	Enox2	chrX	protein_coding	ecto-NOX disulfide-thiol exchanger 2
novel_NIR_21203	chrX	49695981	49697355	-	49692402	49697355	A3SS	ENSMUST00000203933.3	novel	0.17	3	15	3	15	y	0.20	2	8	2	8	y	0.11	3	24	3	24	n	0.13	3	20	3	20	n	0.00	0	17	0	17	n	0.00	0	30	0	30	n	0.00	0	14	0	14	n	0.00	0	27	0	27	n	0.00478842587843982	7.56611880994171	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21205	chrX	49697691	49700982	-	49697691	49701582	A5SS	ENSMUST00000203933.3	novel	0.32	19	40	19	40	n	0.38	12	20	12	20	n	0.36	14	25	14	25	n	0.39	12	19	12	19	n	0.22	8	28	8	28	n	0.21	4	15	4	15	n	0.23	6	20	6	20	n	0.32	10	21	10	21	n	0.0109097421492039	3.95811402901264	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21214	chrX	49720407	49723822	-	49719872	49723822	A3SS	ENSMUST00000124842.8	novel	0.05	3	55	3	55	n	0.21	6	23	6	23	n	0.16	7	37	7	37	n	0.16	6	31	6	31	y	0.00	0	39	0	39	n	0.00	0	52	0	52	n	0.03	1	38	1	38	n	0.00	0	37	0	37	n	0.0239401915008554	3.97273315183038	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21215	chrX	51180677	51233065	-	51180677	51253493	A5SS	ENSMUST00000033450.3	novel	0.18	33	151	33	151	y	0.23	25	85	25	85	y	0.13	18	117	18	117	n	0.15	21	118	21	118	y	0.08	6	70	6	70	n	0.12	14	106	14	106	n	0.10	7	61	7	61	n	0.06	7	119	7	119	n	0.0231922518265646	3.26216091127874	up	ENSMUSG00000031119.5	Gpc4	chrX	protein_coding	glypican 4
novel_NIR_21224	chrX	59281797	59281917	-	59271153	59281917	A3SS	ENSMUST00000033480.13	novel	0.15	16	90	16	90	n	0.19	4	17	4	17	y	0.20	15	59	15	59	n	0.14	6	37	6	37	n	0.08	5	60	5	60	n	0.07	8	115	8	115	n	0.06	3	48	3	48	n	0.09	9	92	9	92	n	0.0037563545846254	5.91062465996342	up	ENSMUSG00000062949.14	Atp11c	chrX	protein_coding	ATPase, class VI, type 11C
