X.ID	Chr	Ass1	Ass2	Strand	Mss1	Mss2	Type	Isoform	KorN	CLPDCA_1.Ratio	CLPDCA_1.Alt_average_sj	CLPDCA_1.Model_average_sj	CLPDCA_1.Alt_sj	CLPDCA_1.Model_sj	CLPDCA_1.isfiltered	CLPDCA_2.Ratio	CLPDCA_2.Alt_average_sj	CLPDCA_2.Model_average_sj	CLPDCA_2.Alt_sj	CLPDCA_2.Model_sj	CLPDCA_2.isfiltered	CLPDCA_3.Ratio	CLPDCA_3.Alt_average_sj	CLPDCA_3.Model_average_sj	CLPDCA_3.Alt_sj	CLPDCA_3.Model_sj	CLPDCA_3.isfiltered	CLPDCA_4.Ratio	CLPDCA_4.Alt_average_sj	CLPDCA_4.Model_average_sj	CLPDCA_4.Alt_sj	CLPDCA_4.Model_sj	CLPDCA_4.isfiltered	Sham_1.Ratio	Sham_1.Alt_average_sj	Sham_1.Model_average_sj	Sham_1.Alt_sj	Sham_1.Model_sj	Sham_1.isfiltered	Sham_2.Ratio	Sham_2.Alt_average_sj	Sham_2.Model_average_sj	Sham_2.Alt_sj	Sham_2.Model_sj	Sham_2.isfiltered	Sham_3.Ratio	Sham_3.Alt_average_sj	Sham_3.Model_average_sj	Sham_3.Alt_sj	Sham_3.Model_sj	Sham_3.isfiltered	Sham_4.Ratio	Sham_4.Alt_average_sj	Sham_4.Model_average_sj	Sham_4.Alt_sj	Sham_4.Model_sj	Sham_4.isfiltered	Pvalue	Tvalue	DiffType	Gene	Symbol	Chr	GeneType	Description
known_NIR_47	chr1	120171997	120197855	-	120171997	120197713	A5SS	ENSMUST00000112641.8	known	0.93	13	1	13	1	n	0.67	6	3	6	3	n	0.67	2	1	2	1	n	0.76	19	6	19	6	y	0.65	11	6	11	6	y	0.51	21	20	21	20	y	0.43	6	8	6	8	y	0.53	8	7	8	7	y	0.0271347314350583	2.9813372994385	up	ENSMUSG00000026389.17	Steap3	chr1	protein_coding	STEAP family member 3
known_NIR_76	chr1	130585051;130585216	130585200;130589185	-	130585051	130589185	cassetteExon	ENSMUST00000027657.14	known	0.03	58.5	1739	78;39	1739	y	0.04	54.5	1461	76;33	1461	y	0.04	172.0	3721	239;105	3721	y	0.04	96.5	2486	123;70	2486	y	0.03	52.0	1529	62;42	1529	y	0.02	57.5	2634	79;36	2634	y	0.03	45.0	1367	55;35	1367	y	0.03	74.5	2189	95;54	2189	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
known_NIR_124	chr1	133202112	133202531	+	133202112	133209521	A3SS	ENSMUST00000189598.2	known	0.87	13	2	13	2	y	0.83	5	1	5	1	n	0.38	3	5	3	5	n	0.64	14	8	14	8	y	0.33	5	10	5	10	y	0.42	8	11	8	11	y	0.25	2	6	2	6	n	0.23	3	10	3	10	y	0.0375734608498724	3.10529002162931	up	ENSMUSG00000041757.18	Plekha6	chr1	protein_coding	pleckstrin homology domain containing, family A member 6
known_NIR_375	chr1	16716053;16717277	16717212;16718179	-	16716053	16718179	cassetteExon	ENSMUST00000188641.7	known	0.02	4.5	223	4;5	223	y	0.02	4.0	208	5;3	208	y	0.03	10.0	303	7;13	303	y	0.01	3.0	217	3;3	217	y	0.00	1.0	253	1;1	253	n	0.01	4.0	264	4;4	264	y	0.01	3.0	222	2;4	222	y	0.01	2.0	278	2;2	278	y	0.0478566196408534	2.61116483933547	up	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_377	chr1	16718231	16726520	-	16718231	16727216	A5SS	ENSMUST00000115352.10	known	0.04	1	25	1	25	n	0.10	3	26	3	26	y	0.12	6	42	6	42	y	0.12	3	21	3	21	y	0.26	6	17	6	17	y	0.22	5	18	5	18	y	0.17	3	15	3	15	y	0.22	7	25	7	25	y	0.00355832611663762	-4.63697018939236	down	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_380	chr1	16718231	16727136	-	16718231	16727216	A5SS	ENSMUST00000115352.10	known	0.19	6	25	6	25	y	0.28	10	26	10	26	y	0.25	14	42	14	42	y	0.25	7	21	7	21	y	0.39	11	17	11	17	y	0.51	19	18	19	18	y	0.32	7	15	7	15	y	0.43	19	25	19	25	y	0.0157386531003128	-3.87047304022074	down	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_381	chr1	16718231	16727216	-	16718231	16727046	5pMXE	ENSMUST00000188641.7	known	0.22	25	91	25	91	y	0.25	26	80	26	80	y	0.30	42	100	42	100	y	0.18	21	97	21	97	y	0.15	17	100	17	100	y	0.14	18	114	18	114	y	0.15	15	83	15	83	y	0.19	25	110	25	110	y	0.0427979289033942	2.89714387336059	up	ENSMUSG00000079658.10	Eloc	chr1	protein_coding	elongin C
known_NIR_395	chr1	170027582	170034683	-	170027582;170032772	170032684;170034683	ES	ENSMUST00000150821.8	known	0.00	0	25.0	0	31;19	n	0.00	0	15.5	0	17;14	n	0.03	1	38.0	1	40;36	n	0.02	1	41.0	1	42;40	n	0.05	1	20.0	1	19;21	n	0.09	4	38.5	4	45;32	y	0.06	1	16.5	1	21;12	n	0.09	4	42.0	4	45;39	y	0.00418573061200276	-4.70678724331642	down	ENSMUSG00000026667.15	Uhmk1	chr1	protein_coding	U2AF homology motif (UHM) kinase 1
known_NIR_488	chr1	178152878	178157433	-	178156972	178157433	A3SS	ENSMUST00000037748.9	known	0.01	6	404	6	404	y	0.01	6	422	6	422	y	0.01	7	615	7	615	y	0.03	15	433	15	433	y	0.05	20	414	20	414	y	0.02	11	518	11	518	y	0.05	25	505	25	505	y	0.04	21	535	21	535	y	0.0313774679281493	-2.88675134594813	down	ENSMUSG00000039630.11	Hnrnpu	chr1	protein_coding	heterogeneous nuclear ribonucleoprotein U
known_NIR_553	chr1	185064518	185070303	+	185064460	185070303	A5SS	ENSMUST00000027916.13	known	0.03	3	83	3	83	y	0.04	3	76	3	76	y	0.03	3	84	3	84	y	0.02	3	136	3	136	y	0.07	5	68	5	68	y	0.05	7	132	7	132	y	0.04	5	115	5	115	y	0.06	7	103	7	103	y	0.0216793077491661	-3.27326835353989	down	ENSMUSG00000026617.17	Bpnt1	chr1	protein_coding	3'(2'), 5'-bisphosphate nucleotidase 1
known_NIR_580	chr1	191308063	191314511	+	191308063	191318636	A3SS	ENSMUST00000194785.2	known	0.87	20	3	20	3	y	0.95	20	1	20	1	n	0.97	37	1	37	1	n	0.90	38	4	38	4	y	1.00	15	0	15	0	n	1.00	43	0	43	0	n	1.00	10	0	10	0	n	1.00	37	0	37	0	n	0.0428029670057896	-3.38910840441737	down	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_582	chr1	191308063	191318636	+	191308063;191315437	191315291;191318636	ES	ENSMUST00000194877.6	known	0.20	3	12.0	3	3;21	y	0.12	1	7.5	1	0;15	n	0.07	1	13.0	1	4;22	n	0.16	4	21.0	4	5;37	y	0.00	0	12.0	0	4;20	n	0.00	0	15.0	0	1;29	n	0.00	0	7.0	0	0;14	n	0.00	0	17.5	0	2;33	n	0.0158588296927447	4.94579785697399	up	ENSMUSG00000037461.11	Ints7	chr1	protein_coding	integrator complex subunit 7
known_NIR_599	chr1	194786215	194789126	-	194781149	194789126	A3SS	ENSMUST00000193094.6	known	0.98	117	2	117	2	y	1.00	152	0	152	0	n	0.97	97	3	97	3	y	0.99	109	1	109	1	n	0.98	96	2	96	2	y	0.95	134	7	134	7	y	0.96	108	5	108	5	y	0.95	106	6	106	6	y	0.0403639628021936	2.61116483933547	up	ENSMUSG00000016481.16	Cr1l	chr1	protein_coding	complement component (3b/4b) receptor 1-like
known_NIR_609	chr1	21310883;21315256	21315162;21319975	+	21310883	21319975	cassetteExon	ENSMUST00000027067.15	known	0.12	223.0	1706	131;315	1706	y	0.11	105.5	869	59;152	869	y	0.11	14.5	123	8;21	123	y	0.12	207.0	1464	132;282	1464	y	0.13	288.5	1888	170;407	1888	y	0.12	336.5	2413	204;469	2413	y	0.13	288.0	1944	160;416	1944	y	0.12	320.0	2289	193;447	2289	y	0.0498252627805766	-2.44948974278318	down	ENSMUSG00000025934.16	Gsta3	chr1	protein_coding	glutathione S-transferase, alpha 3
known_NIR_615	chr1	24069609	24069823	-	24069021	24069823	A3SS	ENSMUST00000188712.7	known	0.00	0	14	0	14	n	0.00	0	11	0	11	n	0.10	4	36	4	36	y	0.04	1	25	1	25	n	0.25	4	12	4	12	y	0.21	3	11	3	11	y	0.27	4	11	4	11	y	0.12	4	28	4	28	y	0.00612469520812448	-4.35056424634518	down	ENSMUSG00000026153.16	Fam135a	chr1	protein_coding	family with sequence similarity 135, member A
known_NIR_703	chr1	38034922	38035974	-	38034922	38036190	A5SS	ENSMUST00000162031.8	known	0.31	31	69	31	69	y	0.27	21	58	21	58	y	0.31	35	77	35	77	y	0.23	31	106	31	106	y	0.24	17	53	17	53	y	0.21	24	92	24	92	y	0.11	10	78	10	78	y	0.16	17	87	17	87	y	0.0316962316051026	2.90700949866906	up	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_704	chr1	38034922	38035974	-	38034922	38036245	A5SS	ENSMUST00000193832.6	known	0.70	31	13	31	13	y	0.57	21	16	21	16	y	0.64	35	20	35	20	y	0.57	31	23	31	23	y	0.42	17	23	17	23	y	0.48	24	26	24	26	y	0.43	10	13	10	13	y	0.59	17	12	17	12	y	0.0326861878258655	2.8	up	ENSMUSG00000058407.13	Txndc9	chr1	protein_coding	thioredoxin domain containing 9
known_NIR_748	chr1	45958330	45960316	-	45958160	45960316	A3SS	ENSMUST00000027137.11	known	0.02	3	132	3	132	y	0.02	2	101	2	101	y	0.02	3	125	3	125	y	0.00	0	129	0	129	n	0.02	2	85	2	85	y	0.04	8	218	8	218	y	0.03	3	113	3	113	y	0.04	8	202	8	202	y	0.0448673860955737	-2.52810291480115	down	ENSMUSG00000025993.11	Slc40a1	chr1	protein_coding	solute carrier family 40 (iron-regulated transporter), member 1
known_NIR_787	chr1	53360369	53362326	+	53360369;53360726	53360655;53362326	ES	ENSMUST00000027265.10	known	0.07	6	79.0	6	82;76	y	0.12	8	56.5	8	52;61	y	0.07	5	69.0	5	81;57	y	0.10	6	55.0	6	53;57	y	0.11	7	56.0	7	59;53	y	0.15	16	92.5	16	83;102	y	0.19	16	67.0	16	59;75	y	0.20	19	74.0	19	75;73	y	0.0299544623423321	-3.02895121362914	down	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
known_NIR_789	chr1	53360369;53360726	53360464;53362326	+	53360369	53362326	cassetteExon	ENSMUST00000151296.8	known	0.86	38.0	6	0;76	6	n	0.79	30.5	8	0;61	8	n	0.85	28.5	5	0;57	5	n	0.83	28.5	6	0;57	6	n	0.79	26.5	7	0;53	7	n	0.76	51.0	16	0;102	16	n	0.70	37.5	16	0;75	16	n	0.66	36.5	19	0;73	19	n	0.0281729862464374	3.17188217024232	up	ENSMUSG00000026096.15	Osgepl1	chr1	protein_coding	O-sialoglycoprotein endopeptidase-like 1
known_NIR_807	chr1	57417105	57419201	+	57417105	57421902	A3SS	ENSMUST00000042734.3	known	0.08	2	22	2	22	y	0.12	2	15	2	15	y	0.10	2	18	2	18	y	0.10	4	38	4	38	y	0.28	9	23	9	23	y	0.15	5	29	5	29	y	0.20	3	12	3	12	y	0.33	8	16	8	16	y	0.0372864080790204	-3.41226674755003	down	ENSMUSG00000038323.4	1700066M21Rik	chr1	protein_coding	RIKEN cDNA 1700066M21 gene
known_NIR_810	chr1	58002420	58004510	-	58002420	58004488	A5SS	ENSMUST00000114410.10	known	-	-	-	-	-	-	0.00	0	5	0	5	n	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.50	3	3	3	3	n	0.09	1	10	1	10	n	0.0322905888999756	-3.30536476602079	down	ENSMUSG00000054770.17	Kctd18	chr1	protein_coding	potassium channel tetramerisation domain containing 18
known_NIR_829	chr1	58750751	58752730	+	58750751	58752455	A3SS	ENSMUST00000149874.8	known	0.90	46	5	46	5	y	0.97	32	1	32	1	n	0.88	60	8	60	8	y	0.91	50	5	50	5	y	1.00	31	0	31	0	n	0.94	49	3	49	3	y	1.00	42	0	42	0	n	0.98	60	1	60	1	n	0.0383539656612115	-2.71068738274197	down	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_830	chr1	58752818	58756419	+	58752818	58765465	A3SS	ENSMUST00000140940.8	known	0.02	1	43	1	43	n	0.03	1	34	1	34	n	0.07	4	56	4	56	y	0.02	1	56	1	56	n	0.08	4	46	4	46	y	0.12	7	53	7	53	y	0.17	5	25	5	25	y	0.08	4	49	4	49	y	0.0270633053739892	-3.16943152114814	down	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_831	chr1	58752818	58761488	+	58752818	58756419	3pMXE	ENSMUST00000097723.3	known	0.83	5	1	5	1	n	0.88	7	1	7	1	n	0.67	8	4	8	4	y	0.83	5	1	5	1	n	0.60	6	4	6	4	y	0.46	6	7	6	7	y	0.58	7	5	7	5	y	0.60	6	4	6	4	y	0.00636166223707391	4.27156682361825	up	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
known_NIR_938	chr1	74431408	74432437	+	74431123	74432437	A5SS	ENSMUST00000027367.14	known	0.01	1	197	1	197	n	0.01	1	120	1	120	n	0.00	0	155	0	155	n	0.01	2	195	2	195	y	0.04	6	128	6	128	y	0.03	8	246	8	246	y	0.02	4	174	4	174	y	0.02	4	232	4	232	y	0.0166979601915548	-3.70328039909021	down	ENSMUSG00000026176.14	Ctdsp1	chr1	protein_coding	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1
known_NIR_971	chr1	75187802	75187884	+	75187668	75187884	A5SS	ENSMUST00000123825.8	known	0.34	16	31	16	31	y	0.18	8	37	8	37	y	0.27	13	35	13	35	y	0.34	18	35	18	35	y	0.12	4	29	4	29	y	0.19	14	58	14	58	y	0.11	4	33	4	33	y	0.22	7	25	7	25	y	0.0427882595719394	2.63807132008501	up	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_972	chr1	75187802	75187884	+	75187696	75187884	A5SS	ENSMUST00000027401.11	known	0.09	16	164	16	164	y	0.05	8	169	8	169	y	0.07	13	161	13	161	y	0.09	18	184	18	184	y	0.03	4	141	4	141	y	0.06	14	236	14	236	y	0.02	4	184	4	184	y	0.04	7	184	7	184	y	0.0269261666278374	2.92306411107734	up	ENSMUSG00000026201.13	Stk16	chr1	protein_coding	serine/threonine kinase 16
known_NIR_991	chr1	75412655	75413422	+	75412837	75413422	5pMXE	ENSMUST00000131545.8	known	0.86	24	4	24	4	y	0.89	31	4	31	4	y	0.87	55	8	55	8	y	0.93	26	2	26	2	y	1.00	29	0	29	0	n	0.97	33	1	33	1	n	1.00	21	0	21	0	n	0.93	39	3	39	3	y	0.00846561647696945	-3.85727138144589	down	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_996	chr1	75412655;75412837	75412759;75413422	+	75412655	75413422	cassetteExon	ENSMUST00000037796.14	known	0.08	2.0	24	0;4	24	n	0.06	2.0	31	0;4	31	n	0.07	4.0	55	0;8	55	n	0.04	1.0	26	0;2	26	n	0.00	0.0	29	0;0	29	n	0.01	0.5	33	0;1	33	n	0.00	0.0	21	0;0	21	n	0.06	2.5	39	2;3	39	y	0.0441697385270668	2.69327520749061	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_998	chr1	75412837	75413422	+	75412956	75413422	A5SS	ENSMUST00000113584.8	known	0.18	4	18	4	18	y	0.10	4	38	4	38	y	0.14	8	51	8	51	y	0.05	2	35	2	35	y	0.00	0	15	0	15	n	0.05	1	19	1	19	n	0.00	0	19	0	19	n	0.07	3	40	3	40	y	0.0444555617316827	2.65080528188085	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
known_NIR_1011	chr1	82705057;82705959	82705788;82706937	+	82705057	82706937	cassetteExon	ENSMUST00000078332.13	known	0.08	4.5	54	5;4	54	y	0.06	3.5	56	3;4	56	y	0.05	5.0	102	4;6	102	y	0.06	5.0	79	2;8	79	y	0.02	1.5	61	0;3	61	n	0.04	4.0	92	2;6	92	y	0.05	3.5	69	2;5	69	y	0.04	4.0	98	2;6	98	y	0.0307660079955187	2.80975743474508	up	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1016	chr1	82713228	82728241	+	82713228;82724863	82724804;82728241	ES	ENSMUST00000073025.12	known	0.57	54	41.0	54	13;69	y	0.59	56	39.5	56	21;58	y	0.55	58	48.0	58	11;85	y	0.60	50	33.0	50	18;48	y	0.61	41	26.0	41	12;40	y	0.66	78	40.5	78	15;66	y	0.67	67	33.0	67	14;52	y	0.60	64	43.5	64	25;62	y	0.0388802860849664	-2.76887462097269	down	ENSMUSG00000026150.15	Mff	chr1	protein_coding	mitochondrial fission factor
known_NIR_1069	chr1	87282208	87291826	+	87282208	87282693	3pMXE	ENSMUST00000174846.8	known	0.62	5	3	5	3	n	0.75	3	1	3	1	n	0.93	25	2	25	2	y	0.62	16	10	16	10	y	1.00	11	0	11	0	n	1.00	33	0	33	0	n	1.00	9	0	9	0	n	0.83	29	6	29	6	y	0.0454310969229394	-2.68305478167339	down	ENSMUSG00000048000.16	Gigyf2	chr1	protein_coding	GRB10 interacting GYF protein 2
known_NIR_1077	chr1	87437109	87468381	-	87437109	87437815	5pMXE	ENSMUST00000027477.15	known	0.79	30	8	30	8	y	0.90	26	3	26	3	y	0.75	3	1	3	1	n	0.80	40	10	40	10	y	0.89	33	4	33	4	y	0.96	54	2	54	2	y	0.96	53	2	53	2	y	0.86	37	6	37	6	y	0.0403624498244933	-2.64146900238599	down	ENSMUSG00000026259.15	Ngef	chr1	protein_coding	neuronal guanine nucleotide exchange factor
known_NIR_1164	chr1	92845848	92846628	+	92845848	92846660	A3SS	ENSMUST00000178816.8	known	1.00	9	0	9	0	n	1.00	8	0	8	0	n	-	-	-	-	-	-	1.00	4	0	4	0	n	0.25	2	6	2	6	n	0.30	3	7	3	7	y	0.00	0	7	0	7	n	0.41	9	13	9	13	y	0.00312670492169784	8.76598950844024	up	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1165	chr1	92845848	92846660	+	92845848	92846595	A3SS	ENSMUST00000027487.15	known	0.00	0	126	0	126	n	0.00	0	112	0	112	n	0.00	0	89	0	89	n	0.00	0	143	0	143	n	0.05	6	107	6	107	y	0.05	7	144	7	144	y	0.05	7	132	7	132	y	0.08	13	156	13	156	y	0.00460968363730602	-7.66666666666667	down	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
known_NIR_1199	chr1	93757618	93763009	+	93757618;93760511	93760318;93763009	ES	ENSMUST00000097633.10	known	0.12	3	23.0	3	14;32	y	0.09	2	19.5	2	21;18	y	0.10	2	19.0	2	12;26	y	0.08	4	45.0	4	37;53	y	0.00	0	34.0	0	31;37	n	0.05	3	55.0	3	45;65	y	0.00	0	51.5	0	41;62	n	0.00	0	44.5	0	34;55	n	0.00205470815984547	5.61491520214444	up	ENSMUSG00000073609.10	D2hgdh	chr1	protein_coding	D-2-hydroxyglutarate dehydrogenase
known_NIR_1205	chr1	9620169;9620872	9620786;9623148	+	9620169	9623148	cassetteExon	ENSMUST00000027044.15	known	0.01	0.5	67	1;0	67	n	0.01	1.0	76	1;1	76	n	0.00	0.0	28	0;0	28	n	0.00	0.5	104	0;1	104	n	0.01	1.0	77	0;2	77	n	0.02	2.5	143	3;2	143	y	0.02	1.5	81	3;0	81	n	0.02	2.0	93	4;0	93	n	0.017467049804449	-3.27326835353989	down	ENSMUSG00000025911.15	Adhfe1	chr1	protein_coding	alcohol dehydrogenase, iron containing, 1
known_NIR_1256	chr10	115208851	115220110	-	115208851;115212452	115212257;115220110	ES	ENSMUST00000218842.2	known	0.25	4	12.0	4	18;6	y	0.29	5	12.5	5	11;14	y	0.13	7	45.5	7	59;32	y	0.19	5	21.5	5	23;20	y	0.15	2	11.5	2	12;11	y	0.03	1	28.0	1	34;22	n	0.08	1	11.5	1	11;12	n	0.00	0	13.5	0	18;9	n	0.0204986885129387	3.12771621085612	up	ENSMUSG00000020137.6	Thap2	chr10	protein_coding	THAP domain containing, apoptosis associated protein 2
known_NIR_1296	chr10	120051554	120056656	+	120051554	120053409	3pMXE	ENSMUST00000156877.8	known	0.00	0	329	0	329	n	0.01	3	369	3	369	y	0.00	0	468	0	468	n	0.00	0	371	0	371	n	0.02	7	326	7	326	y	0.01	3	583	3	583	y	0.01	3	390	3	390	y	0.01	3	428	3	428	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
known_NIR_1297	chr10	120051554	120056656	+	120051554;120053514	120053409;120056656	ES	ENSMUST00000020446.11	known	0.00	0	349.5	0	329;370	n	0.01	3	386.0	3	369;403	y	0.00	0	477.0	0	468;486	n	0.00	0	414.0	0	371;457	n	0.02	7	353.5	7	326;381	y	0.01	3	563.5	3	583;544	y	0.01	3	403.5	3	390;417	y	0.01	3	459.5	3	428;491	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000020225.11	Tmbim4	chr10	protein_coding	transmembrane BAX inhibitor motif containing 4
known_NIR_1302	chr10	121212639	121214000	+	121212639	121213927	A3SS	ENSMUST00000040344.7	known	0.02	3	178	3	178	y	0.03	5	141	5	141	y	0.03	6	221	6	221	y	0.02	6	294	6	294	y	0.00	1	206	1	206	n	0.02	7	300	7	300	y	0.00	0	225	0	225	n	0.00	0	301	0	301	n	0.019184626915828	3.46410161513775	up	ENSMUSG00000034707.8	Gns	chr10	protein_coding	glucosamine (N-acetyl)-6-sulfatase
known_NIR_1341	chr10	127120084	127120204	-	127120081	127120204	A3SS	ENSMUST00000126243.9	known	0.34	18	35	18	35	y	0.44	21	27	21	27	y	0.44	36	45	36	45	y	0.48	20	22	20	22	y	0.56	22	17	22	17	y	0.45	26	32	26	32	y	0.53	24	21	24	21	y	0.60	33	22	33	22	y	0.0452152869828269	-2.52357307257618	down	ENSMUSG00000025409.15	Mbd6	chr10	protein_coding	methyl-CpG binding domain protein 6
known_NIR_1344	chr10	127132502;127132609	127132586;127132742	-	127132502	127132742	cassetteExon	ENSMUST00000037290.12	known	0.12	19.5	138	22;17	138	y	0.07	12.0	158	13;11	158	y	0.04	8.5	201	8;9	201	y	0.05	5.5	114	6;5	114	y	0.16	20.5	111	22;19	111	y	0.13	22.5	156	25;20	156	y	0.20	37.5	149	40;35	149	y	0.15	23.0	133	24;22	133	y	0.00857222477619692	-3.89711431702997	down	ENSMUSG00000040354.15	Mars1	chr10	protein_coding	methionine-tRNA synthetase 1
known_NIR_1367	chr10	127836545	127843352	-	127836545	127843314	A5SS	ENSMUST00000219447.2	known	1.00	101	0	101	0	n	1.00	142	0	142	0	n	1.00	8	0	8	0	n	1.00	92	0	92	0	n	0.99	134	2	134	2	y	0.98	196	4	196	4	y	0.95	159	8	159	8	y	0.97	242	7	242	7	y	0.0485668565598008	3.22047024073017	up	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
known_NIR_1387	chr10	128087957	128088064	+	128087957	128088061	A3SS	ENSMUST00000055539.11	known	0.00	0	3	0	3	n	0.50	6	6	6	6	y	0.00	0	7	0	7	n	0.00	0	9	0	9	n	1.00	2	0	2	0	n	0.46	6	7	6	7	y	1.00	1	0	1	0	n	0.57	4	3	4	3	n	0.0158623233026516	-3.34608080865218	down	ENSMUSG00000039994.16	Timeless	chr10	protein_coding	timeless circadian clock 1
known_NIR_1392	chr10	128158399	128159199	+	128158644	128159199	A5SS	ENSMUST00000219037.2	known	0.12	23	175	23	175	y	0.11	29	236	29	236	y	0.09	22	214	22	214	y	0.12	26	185	26	185	y	0.05	11	190	11	190	y	0.08	26	287	26	287	y	0.08	19	228	19	228	y	0.08	21	241	21	241	y	0.0109260063809751	3.63803437554499	up	ENSMUSG00000025381.4	Cnpy2	chr10	protein_coding	canopy FGF signaling regulator 2
known_NIR_1401	chr10	128245217	128246283	-	128245217	128245605	5pMXE	ENSMUST00000026439.14	known	0.04	4	90	4	90	y	0.02	1	65	1	65	n	0.02	2	83	2	83	y	0.02	2	82	2	82	y	0.05	4	78	4	78	y	0.04	3	82	3	82	y	0.03	4	115	4	115	y	0.05	4	82	4	82	y	0.0448673860955738	-2.52810291480115	down	ENSMUSG00000025374.14	Nabp2	chr10	protein_coding	nucleic acid binding protein 2
known_NIR_1407	chr10	128324228	128324765	+	128323886	128324765	A5SS	ENSMUST00000026433.9	known	0.93	96	7	96	7	y	0.94	92	6	92	6	y	0.94	100	6	100	6	y	0.96	89	4	89	4	y	0.99	81	1	81	1	n	0.96	152	7	152	7	y	0.98	109	2	109	2	y	0.97	99	3	99	3	y	0.0113037840257861	-3.60555127546399	down	ENSMUSG00000025369.16	Smarcc2	chr10	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
known_NIR_1411	chr10	128326902;128327633	128327589;128327928	-	128326902	128327928	cassetteExon	ENSMUST00000164181.2	known	0.03	27.0	931	20;34	931	y	0.03	31.0	1183	31;31	1183	y	0.03	34.5	1164	32;37	1164	y	0.02	15.5	753	11;20	753	y	0.02	17.0	846	13;21	846	y	0.01	20.5	1388	18;23	1388	y	0.02	21.0	1212	18;24	1212	y	0.02	26.0	1183	22;30	1183	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000090841.3	Myl6	chr10	protein_coding	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
known_NIR_1537	chr10	29230443	29237980	-	29230443	29237281	A5SS&ES	ENSMUST00000037548.11	known	0.17	3	15	3	15	y	0.16	4	21	4	21	y	0.08	2	24	2	24	y	0.34	10	19	10	19	y	0.33	4	8	4	8	y	0.40	10	15	10	15	y	0.48	13	14	13	14	y	0.46	11	13	11	13	y	0.015903325889664	-3.5792878782572	down	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1538	chr10	29230443;29237341	29237281;29237980	-	29230443	29237980	cassetteExon	ENSMUST00000160144.9	known	0.74	8.5	3	15;2	3	y	0.79	15.0	4	21;9	4	y	0.87	13.0	2	24;2	2	y	0.56	12.5	10	19;6	10	y	0.58	5.5	4	8;3	4	y	0.46	8.5	10	15;2	10	y	0.35	7.0	13	14;0	13	n	0.41	7.5	11	13;2	11	y	0.0139140587020655	3.54291388633285	up	ENSMUSG00000038876.13	Rnf146	chr10	protein_coding	ring finger protein 146
known_NIR_1551	chr10	34273237	34274110	-	34200458	34274110	A3SS	ENSMUST00000105512.8	known	0.00	0	23	0	23	n	0.05	1	20	1	20	n	0.00	0	40	0	40	n	0.00	0	41	0	41	n	0.07	2	25	2	25	y	0.07	3	38	3	38	y	0.07	3	37	3	37	y	0.03	1	35	1	35	n	0.0265019779382493	-2.96730147588351	down	ENSMUSG00000039480.15	Nt5dc1	chr10	protein_coding	5'-nucleotidase domain containing 1
known_NIR_1639	chr10	59732317	59733313	+	59732269	59733313	A5SS	ENSMUST00000147914.8	known	0.54	29	25	29	25	y	0.54	27	23	27	23	y	0.55	32	26	32	26	y	0.45	26	32	26	32	y	0.45	31	38	31	38	y	0.31	23	51	23	51	y	0.42	30	42	30	42	y	0.35	24	44	24	44	y	0.0153449213227298	3.46696806297215	up	ENSMUSG00000020109.14	Dnajb12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member B12
known_NIR_1640	chr10	59732323	59733313	+	59732269	59733313	A5SS	ENSMUST00000147914.8	known	0.71	62	25	62	25	y	0.60	34	23	34	23	y	0.70	62	26	62	26	y	0.66	62	32	62	32	y	0.52	41	38	41	38	y	0.56	66	51	66	51	y	0.51	43	42	43	42	y	0.58	60	44	60	44	y	0.00796053652632449	4.17634534792279	up	ENSMUSG00000020109.14	Dnajb12	chr10	protein_coding	DnaJ heat shock protein family (Hsp40) member B12
known_NIR_1752	chr10	75345538	75345866	-	75345667	75345866	A3SS	ENSMUST00000145890.8	known	0.00	0	162	0	162	n	0.00	0	155	0	155	n	0.01	1	146	1	146	n	0.02	3	177	3	177	y	0.03	4	125	4	125	y	0.02	4	210	4	210	y	0.02	3	145	3	145	y	0.02	4	179	4	179	y	0.0435576347221575	-2.77746029931765	down	ENSMUSG00000033416.16	Gucd1	chr10	protein_coding	guanylyl cyclase domain containing 1
known_NIR_1772	chr10	75729518	75729604	+	75729518	75730873	A3SS	ENSMUST00000218506.2	known	0.91	31	3	31	3	y	0.88	38	5	38	5	y	0.94	146	10	146	10	y	0.93	14	1	14	1	n	0.96	79	3	79	3	y	0.97	87	3	87	3	y	0.93	93	7	93	7	y	1.00	29	0	29	0	n	0.0435590588198888	-2.55376959227624	down	ENSMUSG00000009092.6	Derl3	chr10	protein_coding	Der1-like domain family, member 3
known_NIR_1823	chr10	78187545	78188047	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	known	1.00	45	0	45	0	n	1.00	54	0	54	0	n	1.00	59	0	59	0	n	1.00	63	0	63	0	n	0.98	40	1	40	1	n	0.99	74	1	74	1	n	0.98	65	1	65	1	n	0.98	63	1	63	1	n	0.00598625569770705	7.00000000000002	up	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
known_NIR_1860	chr10	79690555	79694586	+	79690555;79692368	79692338;79694586	ES	ENSMUST00000172282.8	known	0.03	3	106.0	3	87;125	y	0.02	2	88.5	2	80;97	y	0.01	3	311.5	3	275;348	y	0.01	1	181.0	1	164;198	n	0.00	0	128.5	0	109;148	n	0.00	0	182.0	0	154;210	n	0.00	0	113.0	0	92;134	n	0.00	0	157.0	0	134;180	n	0.0353528470025174	3.65563077506966	up	ENSMUSG00000006498.17	Ptbp1	chr10	protein_coding	polypyrimidine tract binding protein 1
known_NIR_1876	chr10	79894563	79894639	-	79894566	79894639	A3SS	ENSMUST00000219260.2	known	0.80	40	10	40	10	y	0.80	41	10	41	10	y	0.83	123	26	123	26	y	0.83	45	9	45	9	y	0.89	24	3	24	3	y	0.88	60	8	60	8	y	0.87	33	5	33	5	y	1.00	38	0	38	0	n	0.0468842378523586	-3.01675990694229	down	ENSMUSG00000035673.11	Sbno2	chr10	protein_coding	strawberry notch 2
known_NIR_1946	chr10	80639557	80639635	+	80639557	80639654	A3SS	ENSMUST00000148665.8	known	0.03	2	65	2	65	y	0.05	2	38	2	38	y	0.04	2	43	2	43	y	0.07	3	41	3	41	y	0.03	1	30	1	30	n	0.00	0	58	0	58	n	0.00	0	34	0	34	n	0.02	1	53	1	53	n	0.0221401194325061	3.07958941544842	up	ENSMUSG00000020211.16	Sf3a2	chr10	protein_coding	splicing factor 3a, subunit 2
known_NIR_1997	chr10	81323418	81323514	-	81323439	81323514	A3SS	ENSMUST00000020463.14	known	0.02	3	126	3	126	y	0.03	3	99	3	99	y	0.01	1	113	1	113	n	0.03	4	114	4	114	y	0.07	7	97	7	97	y	0.04	6	137	6	137	y	0.07	8	115	8	115	y	0.07	8	112	8	112	y	0.00613689009024312	-4.49561189559213	down	ENSMUSG00000020238.15	Ncln	chr10	protein_coding	nicalin
known_NIR_1998	chr10	81324189	81324262	-	81324192	81324262	A3SS	ENSMUST00000020463.14	known	0.27	35	95	35	95	y	0.25	33	100	33	100	y	0.25	40	121	40	121	y	0.26	36	104	36	104	y	0.29	36	88	36	88	y	0.36	69	123	69	123	y	0.35	51	94	51	94	y	0.32	53	112	53	112	y	0.0153777292936246	-4.38856946905627	down	ENSMUSG00000020238.15	Ncln	chr10	protein_coding	nicalin
known_NIR_2001	chr10	81412133	81412363	+	81412133	81412432	A3SS	ENSMUST00000140433.8	known	0.00	0	17	0	17	n	0.00	0	12	0	12	n	0.00	0	5	0	5	n	0.00	0	19	0	19	n	0.06	1	16	1	16	n	0.05	1	19	1	19	n	0.07	2	26	2	26	y	0.11	3	25	3	25	y	0.0117497512000286	-5.51340097956296	down	ENSMUSG00000034771.16	Tle2	chr10	protein_coding	transducin-like enhancer of split 2
known_NIR_2053	chr10	88010795	88013996	+	88010795	88012935	3pMXE	ENSMUST00000219059.2	known	0.00	0	15	0	15	n	0.00	0	15	0	15	n	0.04	1	24	1	24	n	0.00	0	22	0	22	n	0.14	3	19	3	19	y	0.09	2	20	2	20	y	0.15	2	11	2	11	y	0.04	1	23	1	23	n	0.0260726550557365	-3.488343349764	down	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
known_NIR_2054	chr10	88010795	88013996	+	88010795;88013028	88012935;88013996	ES	ENSMUST00000052355.15	known	0.00	0	15.5	0	15;16	n	0.00	0	18.5	0	15;22	n	0.05	1	20.5	1	24;17	n	0.00	0	16.5	0	22;11	n	0.15	3	17.0	3	19;15	y	0.08	2	24.0	2	20;28	y	0.15	2	11.0	2	11;11	y	0.05	1	20.0	1	23;17	n	0.0244209949289398	-3.36753829022413	down	ENSMUSG00000035351.17	Nup37	chr10	protein_coding	nucleoporin 37
known_NIR_2182	chr11	101302050	101302120	-	101302025	101302120	A3SS	ENSMUST00000107257.8	known	0.02	2	86	2	86	y	0.07	5	68	5	68	y	0.03	2	74	2	74	y	0.05	6	111	6	111	y	0.00	0	58	0	58	n	0.01	1	103	1	103	n	0.01	1	101	1	101	n	0.01	1	96	1	96	n	0.0476503883849479	3.07958941544842	up	ENSMUSG00000097239.8	Gm27029	chr11	protein_coding	predicted gene, 27029
known_NIR_2333	chr11	109541899	109544605	+	109541450	109544605	A5SS	ENSMUST00000106677.8	known	0.94	187	13	187	13	y	0.97	151	5	151	5	y	0.94	377	24	377	24	y	0.97	233	8	233	8	y	0.99	130	1	130	1	n	0.99	290	4	290	4	y	0.99	154	2	154	2	y	1.00	265	0	265	0	n	0.0186337975543464	-4.16025147168921	down	ENSMUSG00000020612.17	Prkar1a	chr11	protein_coding	protein kinase, cAMP dependent regulatory, type I, alpha
known_NIR_2341	chr11	113452950	113456412	-	113452950	113456502	A5SS	ENSMUST00000071539.10	known	0.11	3	24	3	24	y	0.06	1	16	1	16	n	0.06	3	48	3	48	y	0.10	2	18	2	18	y	0.04	1	23	1	23	n	0.00	0	19	0	19	n	0.00	0	22	0	22	n	0.00	0	32	0	32	n	0.00544424086069201	4.38856946905627	up	ENSMUSG00000041654.16	Slc39a11	chr11	protein_coding	solute carrier family 39 (metal ion transporter), member 11
known_NIR_2351	chr11	113590808	113593239	-	113590808;113592921	113592882;113593239	ES	ENSMUST00000173655.8	known	0.32	5	10.5	5	8;13	y	0.30	6	14.0	6	18;10	y	0.38	3	5.0	3	5;5	y	0.29	8	19.5	8	20;19	y	0.18	2	9.0	2	9;9	y	0.20	6	24.5	6	23;26	y	0.22	4	14.5	4	12;17	y	0.21	2	7.5	2	6;9	y	0.00522517779634475	5.48198631091354	up	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2352	chr11	113590808	113593239	-	113592921	113593239	A3SS&ES	ENSMUST00000106617.8	known	0.28	5	13	5	13	y	0.38	6	10	6	10	y	0.38	3	5	3	5	n	0.30	8	19	8	19	y	0.18	2	9	2	9	y	0.19	6	26	6	26	y	0.19	4	17	4	17	y	0.18	2	9	2	9	y	0.0101889405027344	5.66946709513841	up	ENSMUSG00000018727.20	Cpsf4l	chr11	protein_coding	cleavage and polyadenylation specific factor 4-like
known_NIR_2360	chr11	114559511	114559607	+	114559435	114559607	A5SS	ENSMUST00000106602.10	known	0.04	18	448	18	448	y	0.03	16	522	16	522	y	0.04	28	712	28	712	y	0.04	19	418	19	418	y	0.02	11	455	11	455	y	0.03	19	595	19	595	y	0.03	14	526	14	526	y	0.02	15	601	15	601	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000057322.13	Rpl38	chr11	protein_coding	ribosomal protein L38
known_NIR_2454	chr11	116186515;116187624	116187556;116191092	-	116186515;116188489	116188397;116191092	MXE	ENSMUST00000106413.10	known	0.20	0.5	2.0	1;0	1;3	n	0.15	1.0	5.5	2;0	2;9	n	0.60	3.0	2.0	4;2	2;2	y	0.43	1.5	2.0	2;1	0;4	n	0.50	3.5	3.5	2;5	2;5	y	0.60	1.5	1.0	1;2	0;2	n	0.78	3.5	1.0	5;2	1;1	n	1.00	2.0	0.0	1;3	0;0	n	0.0484066223909302	-2.47222894823148	down	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2456	chr11	116187624	116191092	-	116188489	116191092	A3SS&ES	ENSMUST00000139699.8	known	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.50	2	2	2	2	n	0.20	1	4	1	4	n	0.50	5	5	5	5	y	0.50	2	2	2	2	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.0255707655625445	-2.95127636265631	down	ENSMUSG00000020792.16	Exoc7	chr11	protein_coding	exocyst complex component 7
known_NIR_2473	chr11	116741787;116742577	116742474;116742847	-	116741787	116742847	cassetteExon	ENSMUST00000092404.13	known	0.13	33.0	212	45;21	212	y	0.14	30.5	188	47;14	188	y	0.13	32.5	226	41;24	226	y	0.14	25.0	158	33;17	158	y	0.16	22.5	114	33;12	114	y	0.18	42.0	194	52;32	194	y	0.17	32.0	159	41;23	159	y	0.18	43.0	198	50;36	198	y	0.00118023553704492	-6.70820393249937	down	ENSMUSG00000034120.19	Srsf2	chr11	protein_coding	serine and arginine-rich splicing factor 2
known_NIR_2525	chr11	119891412;119893911	119893864;119897185	+	119891412	119897185	cassetteExon	ENSMUST00000026436.10	known	0.39	34.5	53	35;34	53	y	0.42	37.0	51	31;43	51	y	0.46	18.0	21	15;21	21	y	0.43	25.5	34	21;30	34	y	0.49	27.5	29	21;34	29	y	0.49	32.0	33	31;33	33	y	0.48	40.0	44	30;50	44	y	0.49	27.5	29	22;33	29	y	0.0210006513208514	-4.26660092991431	down	ENSMUSG00000025372.17	Baiap2	chr11	protein_coding	brain-specific angiogenesis inhibitor 1-associated protein 2
known_NIR_2542	chr11	120031512;120038664	120038547;120041806	-	120031512;120032471	120032426;120041806	MXE	ENSMUST00000132239.8	known	0.45	38.5	48.0	1;76	96;0	n	0.43	32.5	42.5	3;62	85;0	n	0.47	90.0	103.5	2;178	206;1	n	0.47	47.0	54.0	0;94	108;0	n	0.40	31.0	46.0	1;61	92;0	n	0.39	62.0	95.0	1;123	190;0	n	0.41	39.5	58.0	0;79	116;0	n	0.44	45.5	59.0	1;90	118;0	n	0.021038192296991	3.11769145362398	up	ENSMUSG00000061306.17	Slc38a10	chr11	protein_coding	solute carrier family 38, member 10
known_NIR_2566	chr11	120503427	120503672	-	120503427	120503856	A5SS	ENSMUST00000026129.16	known	0.26	179	517	179	517	y	0.28	163	421	163	421	y	0.25	128	382	128	382	y	0.27	178	490	178	490	y	0.24	164	533	164	533	y	0.24	271	870	271	870	y	0.25	215	657	215	657	y	0.24	246	774	246	774	y	0.0327788032416222	3.25041803331577	up	ENSMUSG00000025137.16	Pcyt2	chr11	protein_coding	phosphate cytidylyltransferase 2, ethanolamine
known_NIR_2677	chr11	29476487	29479929	+	29476565	29479929	A5SS	ENSMUST00000136351.8	known	0.86	6	1	6	1	n	1.00	6	0	6	0	n	1.00	6	0	6	0	n	1.00	3	0	3	0	n	0.57	4	3	4	3	n	0.73	8	3	8	3	y	0.67	4	2	4	2	n	0.78	7	2	7	2	n	0.00334292032944376	4.85678756483174	up	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2679	chr11	29476565	29479929	+	29476843	29479929	A5SS&ES	ENSMUST00000133452.8	known	0.05	1	21	1	21	n	0.00	0	20	0	20	n	0.00	0	26	0	26	n	0.00	0	28	0	28	n	0.07	3	38	3	38	y	0.07	3	43	3	43	y	0.06	2	29	2	29	y	0.04	2	44	2	44	y	0.0230542637670071	-3.30747546315826	down	ENSMUSG00000020459.15	Mtif2	chr11	protein_coding	mitochondrial translational initiation factor 2
known_NIR_2689	chr11	3076058;3077219	3077131;3077479	+	3076058	3077479	cassetteExon	ENSMUST00000145164.8	known	0.09	4.0	41	3;5	41	y	0.09	3.5	34	2;5	34	y	0.04	4.5	109	3;6	109	y	0.00	0.0	32	0;0	32	n	0.15	4.5	26	5;4	26	y	0.23	7.0	24	2;12	24	y	0.15	3.5	20	0;7	20	n	0.11	4.0	32	4;4	32	y	0.0202599332175825	-3.15394489822708	down	ENSMUSG00000082286.12	Pisd-ps1	chr11	transcribed_unprocessed_pseudogene	phosphatidylserine decarboxylase, pseudogene 1
known_NIR_2798	chr11	4722638	4730578	-	4718273	4730578	A3SS	ENSMUST00000056290.13	known	0.04	1	25	1	25	n	0.00	0	31	0	31	n	0.00	0	26	0	26	n	0.03	1	32	1	32	n	0.08	2	22	2	22	y	0.10	2	19	2	19	y	0.22	5	18	5	18	y	0.11	2	16	2	16	y	0.0337929115000114	-3.3229241783491	down	ENSMUSG00000009073.17	Nf2	chr11	protein_coding	neurofibromin 2
known_NIR_2809	chr11	4833253	4833368	+	4833171	4833368	A5SS	ENSMUST00000136552.8	known	0.90	18	2	18	2	y	0.86	12	2	12	2	y	0.96	25	1	25	1	n	0.94	16	1	16	1	n	0.79	19	5	19	5	y	0.86	24	4	24	4	y	0.84	16	3	16	3	y	0.88	30	4	30	4	y	0.0494972012987086	2.46566787550334	up	ENSMUSG00000034285.16	Nipsnap1	chr11	protein_coding	nipsnap homolog 1
known_NIR_2816	chr11	49104469	49105891	+	49105481	49105891	A5SS&ES	ENSMUST00000180016.2	known	0.78	7	2	7	2	n	0.50	2	2	2	2	n	0.79	19	5	19	5	y	0.71	15	6	15	6	y	0.82	9	2	9	2	y	1.00	10	0	10	0	n	1.00	7	0	7	0	n	0.92	12	1	12	1	n	0.0292687967396568	-3.00784315063937	down	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2819	chr11	49104469;49105481	49105382;49105891	+	49104469	49105891	cassetteExon	ENSMUST00000109198.8	known	0.12	1.0	7	0;2	7	n	0.33	1.0	2	0;2	2	n	0.12	2.5	19	0;5	19	n	0.23	4.5	15	3;6	15	y	0.10	1.0	9	0;2	9	n	0.05	0.5	10	1;0	10	n	0.00	0.0	7	0;0	7	n	0.04	0.5	12	0;1	12	n	0.0494075281370159	2.79690989763221	up	ENSMUSG00000046311.14	Zfp62	chr11	protein_coding	zinc finger protein 62
known_NIR_2840	chr11	5014478	5015215	-	5014478	5014837	5pMXE	ENSMUST00000156196.2	known	0.39	9	14	9	14	y	0.62	10	6	10	6	y	0.38	23	37	23	37	y	0.50	12	12	12	12	y	0.25	4	12	4	12	y	0.34	10	19	10	19	y	0.31	5	11	5	11	y	0.16	4	21	4	21	y	0.0268121353225453	3.01668631136698	up	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2841	chr11	5014478	5015215	-	5015094	5015215	A3SS	ENSMUST00000151936.2	known	0.47	9	10	9	10	y	0.50	10	10	10	10	y	0.43	23	31	23	31	y	0.32	12	26	12	26	y	0.19	4	17	4	17	y	0.27	10	27	10	27	y	0.24	5	16	5	16	y	0.13	4	26	4	26	y	0.0049378176636565	4.45929990565061	up	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2842	chr11	5014478;5015015	5014837;5015215	-	5014478	5015215	cassetteExon	ENSMUST00000122886.8	known	0.45	7.5	9	14;1	9	n	0.23	3.0	10	6;0	10	n	0.49	22.0	23	37;7	23	y	0.33	6.0	12	12;0	12	n	0.62	6.5	4	12;1	4	n	0.51	10.5	10	19;2	10	y	0.52	5.5	5	11;0	5	n	0.73	11.0	4	21;1	4	n	0.0314272501543785	-2.80914655150387	down	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2843	chr11	5014478;5015094	5014837;5015215	-	5014478	5015215	cassetteExon	ENSMUST00000122886.8	known	0.57	12.0	9	14;10	9	y	0.44	8.0	10	6;10	10	y	0.60	34.0	23	37;31	23	y	0.61	19.0	12	12;26	12	y	0.78	14.5	4	12;17	4	y	0.70	23.0	10	19;27	10	y	0.73	13.5	5	11;16	5	y	0.85	23.5	4	21;26	4	y	0.00675641612449793	-4.10530183844177	down	ENSMUSG00000034201.14	Gas2l1	chr11	protein_coding	growth arrest-specific 2 like 1
known_NIR_2921	chr11	54356249	54356913	+	54329214	54356913	A5SS	ENSMUST00000046835.14	known	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.00	0	14	0	14	n	0.19	3	13	3	13	y	0.50	7	7	7	7	y	0.25	7	21	7	21	y	0.45	5	6	5	6	y	0.33	6	12	6	12	y	0.00622062661507142	-4.19833531503568	down	ENSMUSG00000035992.16	Fnip1	chr11	protein_coding	folliculin interacting protein 1
known_NIR_2956	chr11	58105996	58110290	+	58105996;58107827	58107782;58110290	ES	ENSMUST00000209079.2	known	0.72	27	10.5	27	11;10	y	0.63	6	3.5	6	3;4	y	0.73	34	12.5	34	14;11	y	0.70	49	21.0	49	18;24	y	0.58	9	6.5	9	4;9	y	0.50	24	24.0	24	27;21	y	0.64	14	8.0	14	10;6	y	0.60	39	26.0	39	25;27	y	0.022975308261662	3.10131936733091	up	ENSMUSG00000069874.8	Irgm2	chr11	protein_coding	immunity-related GTPase family M member 2
known_NIR_2988	chr11	59344471	59344654	+	59344471	59344618	A3SS	ENSMUST00000108777.10	known	0.00	0	12	0	12	n	0.00	0	12	0	12	n	0.00	0	13	0	13	n	0.00	0	10	0	10	n	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.13	2	13	2	13	y	0.07	1	13	1	13	n	0.00888864164383608	-6.09077671365564	down	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
known_NIR_2990	chr11	59344471	59344704	+	59344471	59344654	A3SS	ENSMUST00000045279.13	known	1.00	7	0	7	0	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	1.00	6	0	6	0	n	0.91	10	1	10	1	n	0.89	8	1	8	1	n	0.80	8	2	8	2	y	0.89	8	1	8	1	n	0.0139791399743395	5.17826544218146	up	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
known_NIR_3052	chr11	61139308	61139688	-	61138867	61139688	A3SS	ENSMUST00000208086.2	known	0.23	6	20	6	20	y	0.26	5	14	5	14	y	0.25	2	6	2	6	n	0.19	3	13	3	13	y	0.15	4	23	4	23	y	0.17	8	40	8	40	y	0.10	3	28	3	28	y	0.14	2	12	2	12	y	0.00495481274390643	4.33052244625683	up	ENSMUSG00000010025.20	Aldh3a2	chr11	protein_coding	aldehyde dehydrogenase family 3, subfamily A2
known_NIR_3076	chr11	62236144	62240221	-	62236144	62240179	A5SS	ENSMUST00000101066.10	known	0.00	0	39	0	39	n	0.00	0	19	0	19	n	0.03	1	38	1	38	n	0.00	0	44	0	44	n	0.03	1	33	1	33	n	0.02	1	44	1	44	n	0.07	3	40	3	40	y	0.07	3	38	3	38	y	0.0480970961576868	-2.64231303630327	down	ENSMUSG00000018501.18	Ncor1	chr11	protein_coding	nuclear receptor co-repressor 1
known_NIR_3154	chr11	69548669	69549392	-	69548847	69549392	A3SS&ES	ENSMUST00000155200.8	known	0.08	15	183	15	183	y	0.05	9	176	9	176	y	0.06	11	183	11	183	y	0.07	16	221	16	221	y	0.06	11	169	11	169	y	0.04	10	270	10	270	y	0.04	10	220	10	220	y	0.03	6	228	6	228	y	0.0467970393586551	2.49615088301353	up	ENSMUSG00000018761.15	Mpdu1	chr11	protein_coding	mannose-P-dolichol utilization defect 1
known_NIR_3180	chr11	69810162;69810304	69810275;69811989	-	69810162;69811260	69811167;69811989	MXE	ENSMUST00000043419.10	known	0.09	1.5	15.0	3;0	22;8	n	0.12	1.5	10.5	3;0	18;3	n	0.02	0.5	23.0	1;0	25;21	n	0.00	0.0	18.0	0;0	20;16	n	0.22	5.5	19.5	0;11	26;13	n	0.18	4.5	21.0	3;6	25;17	y	0.11	2.5	19.5	0;5	23;16	n	0.20	4.5	17.5	2;7	19;16	y	0.0186083230973414	-3.23126718382944	down	ENSMUSG00000078812.11	Eif5a	chr11	protein_coding	eukaryotic translation initiation factor 5A
known_NIR_3196	chr11	69983616	69983809	+	69983616	69983882	A3SS	ENSMUST00000102572.8	known	0.02	9	588	9	588	y	0.02	12	553	12	553	y	0.02	8	319	8	319	y	0.03	21	649	21	649	y	0.03	18	558	18	558	y	0.03	23	807	23	807	y	0.03	18	636	18	636	y	0.04	30	805	30	805	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000040963.16	Asgr2	chr11	protein_coding	asialoglycoprotein receptor 2
known_NIR_3209	chr11	70126294	70126850	-	70126294	70126823	A5SS	ENSMUST00000108575.9	known	0.81	22	5	22	5	y	0.76	34	11	34	11	y	0.75	38	13	38	13	y	0.82	27	6	27	6	y	0.88	21	3	21	3	y	0.83	30	6	30	6	y	0.85	22	4	22	4	y	0.90	35	4	35	4	y	0.0146257330638106	-3.41121146168976	down	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
known_NIR_3233	chr11	70499252	70499666	+	70499252;70499525	70499415;70499666	ES	ENSMUST00000072237.13	known	0.13	5	33.5	5	40;27	y	0.10	3	27.5	3	25;30	y	0.15	7	40.5	7	44;37	y	0.16	7	35.5	7	36;35	y	0.04	1	27.0	1	31;23	n	0.08	5	54.0	5	52;56	y	0.03	1	29.5	1	28;31	n	0.12	5	38.0	5	35;41	y	0.0388126775742367	2.76047261519354	up	ENSMUSG00000020827.19	Mink1	chr11	protein_coding	misshapen-like kinase 1 (zebrafish)
known_NIR_3423	chr11	79455772	79456244	+	79455772	79456247	A3SS	ENSMUST00000108251.9	known	0.73	11	4	11	4	y	0.80	8	2	8	2	y	0.81	21	5	21	5	y	0.71	10	4	10	4	y	0.87	13	2	13	2	y	0.91	21	2	21	2	y	1.00	9	0	9	0	n	0.88	23	3	23	3	y	0.00805948998020477	-3.94027031824045	down	ENSMUSG00000020716.17	Nf1	chr11	protein_coding	neurofibromin 1
known_NIR_3475	chr11	83746929	83752620	+	83746929	83752542	A3SS	ENSMUST00000021016.10	known	0.38	8	13	8	13	y	0.41	7	10	7	10	y	0.29	14	34	14	34	y	0.35	7	13	7	13	y	0.17	8	40	8	40	y	0.24	8	25	8	25	y	0.30	9	21	9	21	y	0.19	7	29	7	29	y	0.0144224827600546	3.42351355519252	up	ENSMUSG00000020679.12	Hnf1b	chr11	protein_coding	HNF1 homeobox B
known_NIR_3521	chr11	87479678	87480001	+	87479678	87479794	3pMXE	ENSMUST00000133202.3	known	0.17	2	10	2	10	y	0.20	3	12	3	12	y	0.14	1	6	1	6	n	0.19	3	13	3	13	y	0.10	1	9	1	9	n	0.08	1	11	1	11	n	0.04	1	22	1	22	n	0.05	1	21	1	21	n	0.00135058064142222	5.6300215680886	up	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3522	chr11	87479678	87480001	+	87479678;87479911	87479794;87480001	ES	ENSMUST00000239011.2	known	0.13	2	13.0	2	10;16	y	0.16	3	16.0	3	12;20	y	0.17	1	5.0	1	6;4	n	0.17	3	14.5	3	13;16	y	0.08	1	11.0	1	9;13	n	0.07	1	13.0	1	11;15	n	0.05	1	21.0	1	22;20	n	0.04	1	26.5	1	21;32	n	0.000311306730607003	7.41457373113639	up	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3523	chr11	87479678	87480001	+	87479911	87480001	A5SS	ENSMUST00000132723.8	known	0.11	2	16	2	16	y	0.13	3	20	3	20	y	0.20	1	4	1	4	n	0.16	3	16	3	16	y	0.07	1	13	1	13	n	0.06	1	15	1	15	n	0.05	1	20	1	20	n	0.03	1	32	1	32	n	0.00971414652500828	4.56460474064909	up	ENSMUSG00000020486.20	Septin4	chr11	protein_coding	septin 4
known_NIR_3527	chr11	87483076;87483852	87483724;87484215	+	87483076	87484215	cassetteExon	ENSMUST00000103179.10	known	0.64	3.5	2	2;5	2	n	0.75	3.0	1	0;6	1	n	0.55	8.5	7	3;14	7	y	0.60	6.0	4	1;11	4	n	0.17	2.0	10	1;3	10	n	0.50	5.0	5	0;10	5	n	0.33	2.5	5	0;5	5	n	0.37	3.5	6	1;6	6	n	0.0146065587947279	3.64735616537302	up	ENSMUSG00000018401.18	Mtmr4	chr11	protein_coding	myotubularin related protein 4
known_NIR_3584	chr11	95304967	95305158	+	95304957	95305158	A5SS	ENSMUST00000107724.9	known	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.36	5	9	5	9	y	0.33	2	4	2	4	n	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.20	1	4	1	4	n	0.0039511949095393	5.65269539557668	up	ENSMUSG00000057522.16	Spop	chr11	protein_coding	speckle-type BTB/POZ protein
known_NIR_3639	chr11	98655231	98659100	+	98655231	98658983	A3SS	ENSMUST00000064187.12	known	0.28	7	18	7	18	y	0.19	3	13	3	13	y	0.11	2	16	2	16	y	0.10	2	18	2	18	y	0.00	0	18	0	18	n	0.08	2	22	2	22	y	0.00	0	13	0	13	n	0.00	0	16	0	16	n	0.0286412720212101	3.23498319610315	up	ENSMUSG00000058756.14	Thra	chr11	protein_coding	thyroid hormone receptor alpha
known_NIR_3656	chr11	99276462	99276737	-	99276462	99276757	A5SS	ENSMUST00000103131.5	known	0.11	2	17	2	17	y	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	17	0	17	n	0.12	3	23	3	23	y	0.12	5	36	5	36	y	0.14	3	19	3	19	y	0.16	3	16	3	16	y	0.0264241624659688	-3.52608033187164	down	ENSMUSG00000019761.11	Krt10	chr11	protein_coding	keratin 10
known_NIR_3663	chr12	100745569	100752397	+	100745569	100795858	A3SS	ENSMUST00000069782.11	known	0.12	4	30	4	30	y	0.20	4	16	4	16	y	0.17	3	15	3	15	y	0.09	5	51	5	51	y	0.03	1	32	1	32	n	0.06	4	64	4	64	y	0.08	2	22	2	22	y	0.10	4	35	4	35	y	0.0439553750010944	2.68804090552477	up	ENSMUSG00000021185.17	Dglucy	chr12	protein_coding	D-glutamate cyclase
known_NIR_3686	chr12	102709653	102709758	-	102709653	102723800	A5SS	ENSMUST00000174651.2	known	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.15	2	11	2	11	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.00	0	2	0	2	n	0.09	1	10	1	10	n	0.0154255242576139	3.62144283901586	up	ENSMUSG00000041716.8	Gm20604	chr12	protein_coding	predicted gene 20604
known_NIR_3692	chr12	103401832	103405660	+	103401832	103402822	3pMXE	ENSMUST00000148824.2	known	0.01	3	286	3	286	y	0.01	2	306	2	306	y	0.02	10	470	10	470	y	0.01	3	431	3	431	y	0.01	4	346	4	346	y	0.00	2	426	2	426	y	0.00	1	292	1	292	n	0.00	0	348	0	348	n	0.0300197452875444	2.82842712474619	up	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3705	chr12	103403964	103405660	+	103401832	103405660	A5SS	ENSMUST00000076788.12	known	0.99	378	3	378	3	y	0.99	312	2	312	2	y	0.98	457	10	457	10	y	0.99	432	3	432	3	y	0.99	306	4	306	4	y	1.00	445	2	445	2	y	1.00	260	1	260	1	n	1.00	313	0	313	0	n	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000064215.14	Ifi27	chr12	protein_coding	interferon, alpha-inducible protein 27
known_NIR_3796	chr12	111696546	111717621	+	111696546	111700101	3pMXE	ENSMUST00000040519.12	known	0.01	1	79	1	79	n	0.03	3	87	3	87	y	0.02	1	59	1	59	n	0.03	2	78	2	78	y	0.00	0	84	0	84	n	0.02	2	120	2	120	y	0.00	0	107	0	107	n	0.00	0	94	0	94	n	0.0448673860955738	2.52810291480115	up	ENSMUSG00000037787.15	Coa8	chr12	protein_coding	cytochrome c oxidase assembly factor 8
known_NIR_3928	chr12	3823640	3829619	+	3824610	3829619	5pMXE	ENSMUST00000174414.2	known	0.55	35	29	35	29	y	0.60	50	34	50	34	y	0.61	37	24	37	24	y	0.56	37	29	37	29	y	0.45	21	26	21	26	y	0.50	45	45	45	45	y	0.50	44	44	44	44	y	0.47	38	43	38	43	y	0.00217696317112531	5.22232967867094	up	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3929	chr12	3823640;3824610	3824570;3829619	+	3823640	3829619	cassetteExon	ENSMUST00000173199.8	known	0.38	21.0	35	13;29	35	y	0.40	33.0	50	32;34	50	y	0.37	22.0	37	20;24	37	y	0.43	28.0	37	27;29	37	y	0.53	23.5	21	21;26	21	y	0.47	40.5	45	36;45	45	y	0.45	35.5	44	27;44	44	y	0.52	41.5	38	40;43	38	y	0.00771761083085671	-4.16531029887709	down	ENSMUSG00000071454.14	Dtnb	chr12	protein_coding	dystrobrevin, beta
known_NIR_3954	chr12	4905392	4907807	+	4905392	4906846	3pMXE	ENSMUST00000220215.2	known	0.71	5	2	5	2	n	0.57	4	3	4	3	n	0.75	9	3	9	3	y	0.80	8	2	8	2	y	0.62	8	5	8	5	y	0.50	6	6	6	6	y	0.31	5	11	5	11	y	0.47	7	8	7	8	y	0.0300512835950156	2.88057797206567	up	ENSMUSG00000051721.7	Wdcp	chr12	protein_coding	WD repeat and coiled coil containing
known_NIR_3967	chr12	54738868	54739560	-	54738880	54739560	A3SS	ENSMUST00000161592.8	known	0.00	0	62	0	62	n	0.00	0	62	0	62	n	0.00	0	119	0	119	n	0.02	2	90	2	90	y	0.05	3	58	3	58	y	0.05	5	98	5	98	y	0.03	3	90	3	90	y	0.03	3	94	3	94	y	0.00395758466635652	-4.58257569495584	down	ENSMUSG00000054302.16	Eapp	chr12	protein_coding	E2F-associated phosphoprotein
known_NIR_3996	chr12	59177905	59182850	+	59176682	59182850	A5SS	ENSMUST00000175912.8	known	0.68	46	22	46	22	y	0.54	25	21	25	21	y	0.70	26	11	26	11	y	0.68	67	32	67	32	y	0.53	26	23	26	23	y	0.47	69	78	69	78	y	0.48	28	30	28	30	y	0.41	37	54	37	54	y	0.00948240328584119	3.99617028915644	up	ENSMUSG00000021000.18	Mia2	chr12	protein_coding	MIA SH3 domain ER export factor 2
known_NIR_4071	chr12	72126430	72131305	-	72126430	72131423	A5SS	ENSMUST00000019862.3	known	0.02	1	50	1	50	n	0.02	1	50	1	50	n	0.03	1	29	1	29	n	0.00	0	67	0	67	n	0.10	6	54	6	54	y	0.06	5	85	5	85	y	0.04	2	48	2	48	y	0.08	5	57	5	57	y	0.0187278849435457	-3.65563077506965	down	ENSMUSG00000019718.9	L3hypdh	chr12	protein_coding	L-3-hydroxyproline dehydratase (trans-)
known_NIR_4105	chr12	76618416	76618821	+	76618416	76618824	A3SS	ENSMUST00000075249.6	known	0.30	16	37	16	37	y	0.35	8	15	8	15	y	0.33	14	28	14	28	y	0.28	12	31	12	31	y	0.47	16	18	16	18	y	0.47	27	31	27	31	y	0.43	16	21	16	21	y	0.47	34	39	34	39	y	0.000484603349399322	-7.84452582160666	down	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
known_NIR_4123	chr12	79235881	79237543	-	79235881	79238500	A5SS	ENSMUST00000161204.8	known	0.00	0	87	0	87	n	0.00	0	53	0	53	n	0.00	0	112	0	112	n	0.01	1	114	1	114	n	0.01	1	110	1	110	n	0.01	1	142	1	142	n	0.02	3	121	3	121	y	0.01	1	147	1	147	n	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000066441.15	Rdh11	chr12	protein_coding	retinol dehydrogenase 11
known_NIR_4142	chr12	80996378	80996491	+	80996378	80996494	A3SS	ENSMUST00000094693.11	known	0.18	117	522	117	522	y	0.21	141	536	141	536	y	0.22	139	479	139	479	y	0.20	121	471	121	471	y	0.17	123	614	123	614	y	0.16	155	811	155	811	y	0.19	151	655	151	655	y	0.16	159	825	159	825	y	0.0273107830256495	2.93141950921103	up	ENSMUSG00000021134.18	Srsf5	chr12	protein_coding	serine and arginine-rich splicing factor 5
known_NIR_4181	chr12	83679191	83689403	+	83685965	83689403	A5SS&ES	ENSMUST00000182004.8	known	0.94	15	1	15	1	n	1.00	7	0	7	0	n	0.96	23	1	23	1	n	0.78	18	5	18	5	y	0.74	14	5	14	5	y	0.81	22	5	22	5	y	0.79	11	3	11	3	y	0.67	16	8	16	8	y	0.0322729569120368	2.91304347826087	up	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4187	chr12	83685965;83689293	83689176;83689403	+	83685965	83689403	cassetteExon	ENSMUST00000182004.8	known	0.91	10.0	1	7;13	1	n	1.00	5.0	0	4;6	0	n	0.95	18.0	1	12;24	1	n	0.63	8.5	5	10;7	5	y	0.41	3.5	5	2;5	5	y	0.71	12.0	5	7;17	5	y	0.40	2.0	3	1;3	3	n	0.47	7.0	8	3;11	8	y	0.0148063734074405	3.40498956939793	up	ENSMUSG00000010608.16	Rbm25	chr12	protein_coding	RNA binding motif protein 25
known_NIR_4293	chr12	8822511	8839407	+	8821701	8839407	A5SS	ENSMUST00000020911.14	known	0.12	63	465	63	465	y	0.11	35	285	35	285	y	0.12	88	634	88	634	y	0.11	66	513	66	513	y	0.08	29	328	29	328	y	0.09	50	485	50	485	y	0.09	36	381	36	381	y	0.08	54	603	54	603	y	0.000324974679271083	7.34846922834954	up	ENSMUSG00000020592.15	Sdc1	chr12	protein_coding	syndecan 1
known_NIR_4306	chr12	98740578;98745526	98745367;98749841	+	98740578	98749841	cassetteExon	ENSMUST00000110104.10	known	0.44	21.5	27	43;0	27	n	0.49	22.5	23	45;0	23	n	0.62	34.0	21	68;0	21	n	0.54	28.0	24	56;0	24	n	0.36	19.5	34	39;0	34	n	0.44	38.0	49	76;0	49	n	0.34	20.0	38	40;0	38	n	0.45	32.0	39	64;0	39	n	0.0422411005140472	2.63767480669999	up	ENSMUSG00000021012.17	Zc3h14	chr12	protein_coding	zinc finger CCCH type containing 14
known_NIR_4361	chr13	104286691;104288690	104288673;104290804	-	104286691	104290804	cassetteExon	ENSMUST00000144060.8	known	0.52	26.0	24	28;24	24	y	0.51	14.5	14	14;15	14	y	0.43	26.5	35	28;25	35	y	0.42	24.0	33	28;20	33	y	0.57	21.0	16	22;20	16	y	0.68	39.5	19	40;39	19	y	0.53	17.0	15	16;18	15	y	0.59	32.0	22	34;30	22	y	0.0257233646741385	-2.98020596942929	down	ENSMUSG00000021711.18	Trappc13	chr13	protein_coding	trafficking protein particle complex 13
known_NIR_4374	chr13	108189488	108228068	-	108189488;108217927	108217887;108228068	ES	ENSMUST00000163558.3	known	0.04	3	82.5	3	70;95	y	0.04	4	88.0	4	81;95	y	0.03	3	107.0	3	101;113	y	0.04	3	77.0	3	66;88	y	0.01	1	95.5	1	92;99	n	0.01	1	116.5	1	107;126	n	0.01	1	100.0	1	85;115	n	0.00	0	122.5	0	112;133	n	0.00014654258687457	8.48528137423857	up	ENSMUSG00000068184.8	Ndufaf2	chr13	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 2
known_NIR_4433	chr13	12262871	12265488	-	12262871;12264800	12264731;12265488	ES	ENSMUST00000099856.6	known	0.57	2	1.5	2	1;2	n	0.67	3	1.5	3	1;2	n	0.88	7	1.0	7	2;0	n	0.43	3	4.0	3	5;3	y	0.00	0	1.0	0	2;0	n	0.00	0	4.0	0	3;5	n	0.00	0	2.0	0	3;1	n	0.00	0	3.0	0	3;3	n	0.00668027708493538	6.7362327618153	up	ENSMUSG00000021311.10	Mtr	chr13	protein_coding	5-methyltetrahydrofolate-homocysteine methyltransferase
known_NIR_4473	chr13	17859370	17869224	-	17847187	17869224	A3SS	ENSMUST00000068545.6	known	0.57	51	38	51	38	y	0.59	47	32	47	32	y	0.60	29	19	29	19	y	0.53	60	53	60	53	y	0.47	38	42	38	42	y	0.50	72	73	72	73	y	0.42	44	61	44	61	y	0.49	42	43	42	43	y	0.00506367869832885	4.34599130802608	up	ENSMUSG00000055137.8	Sugct	chr13	protein_coding	succinyl-CoA glutarate-CoA transferase
known_NIR_4503	chr13	24005058	24006278	+	24005092	24006278	A5SS	ENSMUST00000141717.8	known	0.55	323	259	323	259	y	0.57	401	299	401	299	y	0.54	390	336	390	336	y	0.55	338	279	338	279	y	0.63	360	211	360	211	y	0.61	572	361	572	361	y	0.61	439	283	439	283	y	0.61	502	324	502	324	y	0.000302865674735824	-7.7771377104782	down	ENSMUSG00000036110.15	Slc17a2	chr13	protein_coding	solute carrier family 17 (sodium phosphate), member 2
known_NIR_4559	chr13	34228510	34234264	+	34228510;34230935	34230769;34234264	ES	ENSMUST00000040656.8	known	0.01	3	440.5	3	460;421	y	0.01	4	364.5	4	349;380	y	0.02	3	149.5	3	156;143	y	0.01	7	464.5	7	492;437	y	0.02	10	412.0	10	425;399	y	0.02	11	661.0	11	687;635	y	0.03	13	455.5	13	478;433	y	0.03	15	504.5	15	542;467	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4560	chr13	34228510	34234264	+	34230935	34234264	A5SS&ES	ENSMUST00000222691.2	known	0.01	3	421	3	421	y	0.01	4	380	4	380	y	0.02	3	143	3	143	y	0.02	7	437	7	437	y	0.02	10	399	10	399	y	0.02	11	635	11	635	y	0.03	13	433	13	433	y	0.03	15	467	15	467	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000038286.12	Bphl	chr13	protein_coding	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)
known_NIR_4654	chr13	4486446	4497032	+	4486446	4488489	A3SS&ES	ENSMUST00000021630.15	known	0.01	26	2256	26	2256	y	0.00	0	1628	0	1628	n	0.00	0	53	0	53	n	0.01	21	2288	21	2288	y	0.01	38	2783	38	2783	y	0.02	65	3839	65	3839	y	0.02	45	2832	45	2832	y	0.01	34	2986	34	2986	y	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000021210.17	Akr1c6	chr13	protein_coding	aldo-keto reductase family 1, member C6
known_NIR_4660	chr13	45147214	45149307	-	45147214	45155393	A5SS	ENSMUST00000072329.15	known	0.00	0	97	0	97	n	0.00	0	75	0	75	n	0.01	1	112	1	112	n	0.01	1	86	1	86	n	0.03	2	68	2	68	y	0.01	1	108	1	108	n	0.02	2	80	2	80	y	0.02	2	123	2	123	y	0.0273393097919095	-3	down	ENSMUSG00000057531.15	Dtnbp1	chr13	protein_coding	dystrobrevin binding protein 1
known_NIR_4665	chr13	4657202	4657390	-	4652796	4657390	A3SS	ENSMUST00000091848.7	known	0.00	0	122	0	122	n	0.00	0	97	0	97	n	0.00	0	64	0	64	n	0.00	0	124	0	124	n	0.02	2	112	2	112	y	0.01	1	162	1	162	n	0.01	1	116	1	116	n	0.01	1	124	1	124	n	0.0153924380733023	-5	down	ENSMUSG00000045410.19	Akr1e1	chr13	protein_coding	aldo-keto reductase family 1, member E1
known_NIR_4669	chr13	46932469;46934140	46934102;46938722	-	46932469	46938722	cassetteExon	ENSMUST00000056978.8	known	0.86	12.5	2	12;13	2	y	0.86	6.0	1	9;3	1	n	0.79	11.0	3	12;10	3	y	0.83	15.0	3	13;17	3	y	1.00	6.5	0	6;7	0	n	1.00	18.5	0	17;20	0	n	1.00	11.0	0	12;10	0	n	1.00	10.0	0	12;8	0	n	0.0021599649447033	-9.94987437106621	down	ENSMUSG00000021375.12	Kif13a	chr13	protein_coding	kinesin family member 13A
known_NIR_4688	chr13	49361622	49369230	-	49361622	49369413	A5SS	ENSMUST00000048946.7	known	0.37	11	19	11	19	y	0.52	12	11	12	11	y	0.31	10	22	10	22	y	0.45	14	17	14	17	y	0.56	14	11	14	11	y	0.58	21	15	21	15	y	0.62	15	9	15	9	y	0.52	16	15	16	15	y	0.0332370393363202	-3.1253547788767	down	ENSMUSG00000037960.12	Card19	chr13	protein_coding	caspase recruitment domain family, member 19
known_NIR_4697	chr13	53063351	53073037	-	53052772	53073037	A3SS	ENSMUST00000137064.8	known	0.01	2	136	2	136	y	0.03	4	124	4	124	y	0.01	1	101	1	101	n	0.02	3	188	3	188	y	0.04	6	142	6	142	y	0.03	7	230	7	230	y	0.06	7	115	7	115	y	0.03	6	189	6	189	y	0.0439153235056009	-2.63493019696104	down	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4701	chr13	53067097	53073037	-	53063351	53073037	A3SS	ENSMUST00000119311.8	known	0.94	33	2	33	2	y	0.85	22	4	22	4	y	0.97	28	1	28	1	n	0.91	31	3	31	3	y	0.79	22	6	22	6	y	0.80	28	7	28	7	y	0.83	34	7	34	7	y	0.86	36	6	36	6	y	0.0230067489470557	3.23877371429586	up	ENSMUSG00000021460.18	Auh	chr13	protein_coding	AU RNA binding protein/enoyl-coenzyme A hydratase
known_NIR_4730	chr13	54832301	54835844	-	54832301	54841542	A5SS	ENSMUST00000037422.16	known	0.15	5	28	5	28	y	0.07	2	28	2	28	y	0.09	5	51	5	51	y	0.12	5	37	5	37	y	0.20	5	20	5	20	y	0.18	10	45	10	45	y	0.17	5	25	5	25	y	0.15	6	35	6	35	y	0.0218609552606592	-3.31510931173373	down	ENSMUSG00000034928.17	Rnf44	chr13	protein_coding	ring finger protein 44
known_NIR_4842	chr13	59950010;59950925	59950806;59953037	-	59950010	59953037	cassetteExon	ENSMUST00000071703.6	known	0.08	3.0	33	2;4	33	y	0.12	2.0	15	2;2	15	y	0.10	5.0	43	5;5	43	y	0.12	6.0	44	2;10	44	y	0.06	3.5	51	4;3	51	y	0.05	2.5	46	3;2	46	y	0.05	2.0	35	1;3	35	n	0.07	4.0	54	5;3	54	y	0.0090797977185607	4.43744398172068	up	ENSMUSG00000035248.10	Tut7	chr13	protein_coding	terminal uridylyl transferase 7
known_NIR_4914	chr13	67065232	67070820	-	67065237	67070820	A3SS	ENSMUST00000021991.11	known	0.10	9	78	9	78	y	0.12	10	71	10	71	y	0.09	8	79	8	79	y	0.06	5	72	5	72	y	0.16	11	58	11	58	y	0.18	19	85	19	85	y	0.10	9	79	9	79	y	0.16	15	77	15	77	y	0.0395135202375172	-2.691946385511	down	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4918	chr13	67078287;67079722	67079670;67080999	-	67078287	67080999	cassetteExon	ENSMUST00000021991.11	known	0.04	1.0	23	2;0	23	n	0.03	1.0	35	1;1	35	n	0.02	1.0	41	2;0	41	n	0.05	1.0	19	1;1	19	n	0.00	0.0	35	0;0	35	n	0.00	0.0	64	0;0	64	n	0.00	0.0	23	0;0	23	n	0.01	0.5	37	0;1	37	n	0.0100549140365711	4.695048270345	up	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4919	chr13	67079371	67080999	-	67078287	67080999	A3SS	ENSMUST00000021991.11	known	0.32	11	23	11	23	y	0.22	10	35	10	35	y	0.25	14	41	14	41	y	0.49	18	19	18	19	y	0.17	7	35	7	35	y	0.15	11	64	11	64	y	0.00	0	23	0	23	n	0.12	5	37	5	37	y	0.0317829430384592	2.94058817645882	up	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
known_NIR_4926	chr13	67254376	67256513	-	67250845	67256513	A3SS	ENSMUST00000186303.7	known	1.00	11	0	11	0	n	0.92	12	1	12	1	n	1.00	7	0	7	0	n	0.94	17	1	17	1	n	0.94	15	1	15	1	n	0.76	16	5	16	5	y	0.84	16	3	16	3	y	0.87	20	3	20	3	y	0.0490677617070458	2.64097362278274	up	ENSMUSG00000100235.9	Gm28557	chr13	protein_coding	predicted gene 28557
known_NIR_4929	chr13	67591453;67595551	67595483;67596940	-	67591453	67596940	cassetteExon	ENSMUST00000225778.2	known	0.14	5.5	33	8;3	33	y	0.10	2.5	22	3;2	22	y	0.05	2.0	41	2;2	41	y	0.13	9.0	59	7;11	59	y	0.01	0.5	37	1;0	37	n	0.02	1.0	48	0;2	48	n	0.03	1.0	28	0;2	28	n	0.07	4.0	50	5;3	50	y	0.0287310357178281	3.00715991471823	up	ENSMUSG00000069206.15	Zfp874a	chr13	protein_coding	zinc finger protein 874a
known_NIR_4941	chr13	68733121	68733297	+	68732475	68733297	A5SS	ENSMUST00000222068.2	known	0.60	9	6	9	6	y	0.89	8	1	8	1	n	0.85	11	2	11	2	y	0.94	15	1	15	1	n	0.60	6	4	6	4	y	0.59	10	7	10	7	y	0.22	2	7	2	7	n	0.56	5	4	5	4	n	0.0338570159261076	2.76397553637731	up	ENSMUSG00000021532.12	Fastkd3	chr13	protein_coding	FAST kinase domains 3
known_NIR_4991	chr13	81806055	81813128	+	81806055	81813124	A3SS	ENSMUST00000224300.2	known	0.17	4	19	4	19	y	0.12	2	15	2	15	y	0.08	6	69	6	69	y	0.11	4	33	4	33	y	0.08	2	23	2	23	y	0.08	3	33	3	33	y	0.00	0	22	0	22	n	0.05	2	39	2	39	y	0.0440871117401844	2.53994634463571	up	ENSMUSG00000035840.8	Lysmd3	chr13	protein_coding	LysM, putative peptidoglycan-binding, domain containing 3
known_NIR_5134	chr14	121835168	121837100	-	121835165	121837100	A3SS	ENSMUST00000212376.3	known	0.80	4	1	4	1	n	0.60	3	2	3	2	n	0.71	5	2	5	2	n	0.75	12	4	12	4	y	0.50	3	3	3	3	n	0.47	7	8	7	8	y	0.67	2	1	2	1	n	0.59	10	7	10	7	y	0.0446250208652754	2.53354848473999	up	ENSMUSG00000025558.20	Dock9	chr14	protein_coding	dedicator of cytokinesis 9
known_NIR_5171	chr14	20406565;20413518	20413331;20424398	+	20406565;20409984	20408092;20424398	MXE	ENSMUST00000224079.2	known	0.50	23.0	23.0	3;43	45;1	n	0.47	18.0	20.5	1;35	39;2	n	0.45	17.0	21.0	2;32	42;0	n	0.53	23.5	21.0	1;46	41;1	n	0.53	21.0	19.0	2;40	37;1	n	0.57	37.5	28.5	14;61	53;4	y	0.59	22.5	15.5	4;41	31;0	n	0.54	28.0	23.5	6;50	47;0	n	0.0214742347461451	-3.1436209919735	down	ENSMUSG00000039599.17	Fam149b	chr14	protein_coding	family with sequence similarity 149, member B
known_NIR_5200	chr14	20772647	20772964	+	20772647	20772896	A3SS	ENSMUST00000022358.9	known	0.04	2	44	2	44	y	0.07	4	56	4	56	y	0.03	3	84	3	84	y	0.06	4	62	4	62	y	0.00	0	44	0	44	n	0.00	0	51	0	51	n	0.04	2	45	2	45	y	0.00	0	43	0	43	n	0.0257240313441162	2.95419578350399	up	ENSMUSG00000021819.12	Zswim8	chr14	protein_coding	zinc finger SWIM-type containing 8
known_NIR_5268	chr14	26163789	26181197	-	26163789;26181109	26181059;26181197	ES	ENSMUST00000145738.8	known	0.68	25	12.0	25	3;21	y	0.65	18	9.5	18	3;16	y	0.67	39	19.0	39	4;34	y	0.75	38	13.0	38	1;25	n	0.73	27	10.0	27	5;15	y	0.76	48	15.5	48	8;23	y	0.79	32	8.5	32	3;14	y	0.86	52	8.5	52	2;15	y	0.0348628373032304	-2.76001742028327	down	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5275	chr14	26163789;26180615	26180565;26181197	-	26163789;26181109	26174693;26181197	MXE	ENSMUST00000090359.11	known	0.39	8.0	12.5	11;5	4;21	y	0.38	5.0	8.0	7;3	0;16	n	0.29	10.5	26.0	13;8	18;34	y	0.39	12.5	19.5	20;5	14;25	y	0.51	10.5	10.0	17;4	5;15	y	0.39	10.0	15.5	12;8	8;23	y	0.52	11.5	10.5	17;6	7;14	y	0.50	12.5	12.5	21;4	10;15	y	0.0245439115940087	-3.0275361440839	down	ENSMUSG00000021870.18	Slmap	chr14	protein_coding	sarcolemma associated protein
known_NIR_5302	chr14	30437832	30487920	+	30460587	30487920	A5SS&ES	ENSMUST00000227201.2	known	0.50	4	4	4	4	n	0.67	8	4	8	4	y	0.47	9	10	9	10	y	0.40	4	6	4	6	y	0.71	5	2	5	2	n	0.62	10	6	10	6	y	0.67	8	4	8	4	y	0.75	9	3	9	3	y	0.0451525212863094	-2.78699378552495	down	ENSMUSG00000006527.17	Sfmbt1	chr14	protein_coding	Scm-like with four mbt domains 1
known_NIR_5306	chr14	30618727	30619814	+	30618727;30619530	30619480;30619814	ES	ENSMUST00000120269.11	known	0.14	1794	11160.5	1794	6360;15961	y	0.13	2066	13834.0	2066	7892;19776	y	0.12	3971	30312.5	3971	17339;43286	y	0.14	1939	11826.5	1939	6748;16905	y	0.08	700	7745.0	700	4389;11101	y	0.11	1669	14197.0	1669	8159;20235	y	0.09	864	8940.0	864	4994;12886	y	0.08	1144	12408.0	1144	7025;17791	y	0.00361362095173034	4.97709037203752	up	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5307	chr14	30618727	30619814	+	30618727;30619530	30619483;30619814	ES	ENSMUST00000078490.14	known	0.13	1794	12452.5	1794	8944;15961	y	0.12	2066	15396.0	2066	11016;19776	y	0.10	3971	34119.0	3971	24952;43286	y	0.13	1939	13281.5	1939	9658;16905	y	0.07	700	8687.0	700	6273;11101	y	0.09	1669	15920.5	1669	11606;20235	y	0.08	864	10101.5	864	7317;12886	y	0.08	1144	14013.0	1144	10235;17791	y	0.00499735446916778	4.89897948556636	up	ENSMUSG00000021922.18	Itih4	chr14	protein_coding	inter alpha-trypsin inhibitor, heavy chain 4
known_NIR_5348	chr14	30961694	30962816	-	30961694;30962390	30962231;30962816	ES	ENSMUST00000226565.2	known	0.00	0	19.5	0	22;17	n	0.05	1	20.0	1	27;13	n	0.00	0	22.0	0	22;22	n	0.00	0	18.0	0	22;14	n	0.12	3	21.0	3	20;22	y	0.06	2	30.0	2	39;21	y	0.11	3	25.0	3	32;18	y	0.06	2	30.5	2	37;24	y	0.0112715826296641	-3.69274472937998	down	ENSMUSG00000021902.8	Phf7	chr14	protein_coding	PHD finger protein 7
known_NIR_5448	chr14	40827217	40827469	+	40827217	40827304	A3SS	ENSMUST00000225720.2	known	0.25	187	553	187	553	y	0.31	172	381	172	381	y	0.29	256	626	256	626	y	0.27	306	819	306	819	y	0.25	182	554	182	554	y	0.22	303	1099	303	1099	y	0.24	171	549	171	549	y	0.25	355	1047	355	1047	y	0.0452098667788731	2.71746488194703	up	ENSMUSG00000037798.8	Mat1a	chr14	protein_coding	methionine adenosyltransferase I, alpha
known_NIR_5465	chr14	4198873	4199236	+	4198737	4199236	A5SS	ENSMUST00000080281.14	known	0.16	46	250	46	250	y	0.11	39	305	39	305	y	0.13	60	407	60	407	y	0.17	57	281	57	281	y	0.11	34	283	34	283	y	0.08	31	378	31	378	y	0.10	38	342	38	342	y	0.10	33	303	33	303	y	0.0385943756766683	2.97260216584117	up	ENSMUSG00000012405.17	Rpl15	chr14	protein_coding	ribosomal protein L15
known_NIR_5471	chr14	45567560	45568287	+	45567389	45568287	A5SS	ENSMUST00000022380.9	known	0.00	1	203	1	203	n	0.00	0	163	0	163	n	0.00	0	299	0	299	n	0.00	0	296	0	296	n	0.02	5	224	5	224	y	0.01	3	297	3	297	y	0.02	3	177	3	177	y	0.01	3	313	3	313	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5472	chr14	45567560	45568287	+	45567640	45568287	A5SS	ENSMUST00000227148.2	known	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.50	5	5	5	5	y	0.50	3	3	3	3	n	0.33	3	6	3	6	n	0.30	3	7	3	7	y	0.0204914431288315	-3.30058400114334	down	ENSMUSG00000021832.9	Psmc6	chr14	protein_coding	proteasome (prosome, macropain) 26S subunit, ATPase, 6
known_NIR_5528	chr14	51162491	51162670	+	51162486	51162670	A5SS	ENSMUST00000049411.12	known	0.08	4	47	4	47	y	0.11	7	55	7	55	y	0.09	12	119	12	119	y	0.17	14	70	14	70	y	0.03	2	65	2	65	y	0.05	4	82	4	82	y	0.05	4	84	4	84	y	0.06	5	85	5	85	y	0.042891514859491	3.07841444805905	up	ENSMUSG00000035960.15	Apex1	chr14	protein_coding	apurinic/apyrimidinic endonuclease 1
known_NIR_5544	chr14	52126854	52126985	+	52126674	52126985	A5SS	ENSMUST00000047899.13	known	0.28	11	29	11	29	y	0.21	8	30	8	30	y	0.33	4	8	4	8	y	0.21	8	31	8	31	y	0.13	2	13	2	13	y	0.15	7	40	7	40	y	0.21	5	19	5	19	y	0.14	5	31	5	31	y	0.0334677242158429	2.91214102869774	up	ENSMUSG00000004561.15	Mettl17	chr14	protein_coding	methyltransferase like 17
known_NIR_5661	chr14	55841700	55842509	+	55841700;55842010	55841925;55842509	ES	ENSMUST00000134863.8	known	0.18	3	13.5	3	4;23	y	0.35	6	11.0	6	3;19	y	0.46	16	18.5	16	11;26	y	0.45	17	20.5	17	10;31	y	0.54	10	8.5	10	5;12	y	0.48	16	17.5	16	5;30	y	0.64	8	4.5	8	0;9	n	0.60	17	11.5	17	5;18	y	0.0426043699070128	-2.77899581938609	down	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5663	chr14	55841700;55842178	55841925;55842509	+	55841700	55842509	cassetteExon	ENSMUST00000130697.8	known	0.40	2.0	3	4;0	3	n	0.25	2.0	6	3;1	6	n	0.27	6.0	16	11;1	16	n	0.28	6.5	17	10;3	17	y	0.20	2.5	10	5;0	10	n	0.18	3.5	16	5;2	16	y	0.11	1.0	8	0;2	8	n	0.17	3.5	17	5;2	17	y	0.0195332471565003	3.45699575818819	up	ENSMUSG00000002325.16	Irf9	chr14	protein_coding	interferon regulatory factor 9
known_NIR_5707	chr14	58074103	58076547	-	58074103;58075124	58075048;58076547	ES	ENSMUST00000089473.5	known	0.13	2	13.0	2	12;14	y	0.09	2	19.5	2	17;22	y	0.15	5	28.5	5	30;27	y	0.22	4	14.0	4	15;13	y	0.00	0	23.5	0	27;20	n	0.03	1	28.0	1	31;25	n	0.00	0	20.5	0	18;23	n	0.07	2	26.5	2	26;27	y	0.012237787236025	3.84584898491665	up	ENSMUSG00000021969.9	Zdhhc20	chr14	protein_coding	zinc finger, DHHC domain containing 20
known_NIR_5768	chr14	66207348	66209181	+	66206137	66209181	A5SS	ENSMUST00000022616.14	known	0.06	185	2904	185	2904	y	0.05	144	2762	144	2762	y	0.05	203	3826	203	3826	y	0.06	242	3986	242	3986	y	0.07	186	2653	186	2653	y	0.08	337	3960	337	3960	y	0.08	203	2449	203	2449	y	0.07	279	3453	279	3453	y	0.00271368203509378	-4.89897948556636	down	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5772	chr14	66208393	66209181	+	66207348	66209181	A5SS	ENSMUST00000153460.8	known	0.04	8	185	8	185	y	0.06	10	144	10	144	y	0.05	11	203	11	203	y	0.04	9	242	9	242	y	0.03	6	186	6	186	y	0.02	7	337	7	337	y	0.01	2	203	2	203	y	0.04	12	279	12	279	y	0.0340084674736242	2.79976957577215	up	ENSMUSG00000022037.16	Clu	chr14	protein_coding	clusterin
known_NIR_5786	chr14	66965449	66969013	+	66965280	66969013	A5SS	ENSMUST00000159365.8	known	0.27	3	8	3	8	y	0.25	1	3	1	3	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	1.00	3	0	3	0	n	1.00	4	0	4	0	n	0.62	5	3	5	3	n	0.62	5	3	5	3	n	0.0128138380717826	-4.26542131383847	down	ENSMUSG00000045875.14	Adra1a	chr14	protein_coding	adrenergic receptor, alpha 1a
known_NIR_5819	chr14	72836582	72840362	-	72836582	72889456	A5SS	ENSMUST00000089017.12	known	0.73	11	4	11	4	y	0.82	14	3	14	3	y	0.77	27	8	27	8	y	0.73	16	6	16	6	y	0.62	8	5	8	5	y	0.46	12	14	12	14	y	0.60	12	8	12	8	y	0.70	19	8	19	8	y	0.0359923560850701	3.08501450363406	up	ENSMUSG00000033487.15	Fndc3a	chr14	protein_coding	fibronectin type III domain containing 3A
known_NIR_5836	chr14	73391850	73392271	+	73391848	73392271	A5SS	ENSMUST00000163339.8	known	0.04	2	52	2	52	y	0.06	3	49	3	49	y	0.06	4	61	4	61	y	0.06	4	58	4	58	y	0.02	1	54	1	54	n	0.01	1	87	1	87	n	0.00	0	57	0	57	n	0.05	3	63	3	63	y	0.039550730787069	2.94058817645882	up	ENSMUSG00000022106.15	Rcbtb2	chr14	protein_coding	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
known_NIR_5863	chr14	75575637	75576749	+	75575010	75576749	A5SS	ENSMUST00000022577.6	known	0.00	0	24	0	24	n	0.06	3	49	3	49	y	0.02	3	174	3	174	y	0.09	5	49	5	49	y	0.19	6	26	6	26	y	0.28	15	38	15	38	y	0.28	7	18	7	18	y	0.20	6	24	6	24	y	0.000995529601691702	-6.12825877028341	down	ENSMUSG00000022000.12	Zc3h13	chr14	protein_coding	zinc finger CCCH type containing 13
known_NIR_5902	chr14	8512701	8515107	+	8508578	8515107	A5SS	ENSMUST00000065865.10	known	0.32	25	53	25	53	y	0.25	16	48	16	48	y	0.22	14	50	14	50	y	0.27	25	66	25	66	y	0.37	24	41	24	41	y	0.42	35	48	35	48	y	0.44	28	36	28	36	y	0.40	31	46	31	46	y	0.0020633990190637	-5.52764497179127	down	ENSMUSG00000053453.10	Thoc7	chr14	protein_coding	THO complex 7
known_NIR_5919	chr15	100308112	100310115	-	100308112	100310072	A5SS	ENSMUST00000023774.12	known	0.07	2	27	2	27	y	0.00	0	25	0	25	n	0.01	2	203	2	203	y	0.03	1	31	1	31	n	0.07	2	25	2	25	y	0.09	5	51	5	51	y	0.07	2	27	2	27	y	0.13	6	41	6	41	y	0.024846603929468	-2.98098237568937	down	ENSMUSG00000023030.17	Slc11a2	chr15	protein_coding	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
known_NIR_5960	chr15	102109517	102110879	-	102097114	102110879	A3SS	ENSMUST00000230656.2	known	0.56	5	4	5	4	n	0.67	2	1	2	1	n	1.00	5	0	5	0	n	1.00	3	0	3	0	n	0.43	3	4	3	4	n	0.29	2	5	2	5	n	0.00	0	1	0	1	n	0.38	3	5	3	5	n	0.0121458136470847	3.58215147399091	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_5961	chr15	102109517	102110879	-	102097397	102110879	A3SS	ENSMUST00000229043.2	known	0.15	5	29	5	29	y	0.09	2	21	2	21	y	0.13	5	33	5	33	y	0.08	3	33	3	33	y	0.08	3	33	3	33	y	0.05	2	41	2	41	y	0.00	0	35	0	35	n	0.06	3	44	3	44	y	0.0337372810436539	2.7406406388126	up	ENSMUSG00000023044.3	Csad	chr15	protein_coding	cysteine sulfinic acid decarboxylase
known_NIR_6003	chr15	102396712	102398187	+	102396712	102398190	A3SS	ENSMUST00000231089.2	known	0.70	33	14	33	14	y	0.71	30	12	30	12	y	0.77	37	11	37	11	y	0.74	26	9	26	9	y	0.88	28	4	28	4	y	0.83	44	9	44	9	y	0.80	33	8	33	8	y	0.84	53	10	53	10	y	0.0033394624787636	-4.70102133515957	down	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6005	chr15	102396712	102398190	+	102396712	102397211	3pMXE	ENSMUST00000230129.2	known	0.03	14	522	14	522	y	0.02	12	520	12	520	y	0.02	11	624	11	624	y	0.02	9	551	9	551	y	0.01	4	484	4	484	y	0.01	9	676	9	676	y	0.01	8	556	8	556	y	0.01	10	790	10	790	y	0.0153924380733023	5	up	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6006	chr15	102396712;102397249	102397211;102398190	+	102396712	102398190	cassetteExon	ENSMUST00000231089.2	known	0.96	326.5	14	522;131	14	y	0.96	322.5	12	520;125	12	y	0.97	394.5	11	624;165	11	y	0.98	363.0	9	551;175	9	y	0.99	310.5	4	484;137	4	y	0.98	432.0	9	676;188	9	y	0.98	350.5	8	556;145	8	y	0.98	507.5	10	790;225	10	y	0.0435576347221585	-2.77746029931763	down	ENSMUSG00000056851.15	Pcbp2	chr15	protein_coding	poly(rC) binding protein 2
known_NIR_6037	chr15	103152455	103154773	+	103152455	103152683	3pMXE	ENSMUST00000036004.16	known	0.19	30	126	30	126	y	0.15	27	159	27	159	y	0.17	41	207	41	207	y	0.14	18	112	18	112	y	0.32	37	79	37	79	y	0.18	36	162	36	162	y	0.28	42	107	42	107	y	0.33	61	126	61	126	y	0.0380441978985198	-3.19464986835028	down	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6038	chr15	103152455	103154773	+	103152455;103154393	103152683;103154773	ES	ENSMUST00000230489.2	known	0.32	30	63.0	30	126;0	n	0.25	27	79.5	27	159;0	n	0.28	41	103.5	41	207;0	n	0.24	18	56.0	18	112;0	n	0.48	37	40.5	37	79;2	y	0.31	36	81.0	36	162;0	n	0.44	42	53.5	42	107;0	n	0.49	61	63.5	61	126;1	n	0.0242890308395222	-3.48746478449386	down	ENSMUSG00000046434.17	Hnrnpa1	chr15	protein_coding	heterogeneous nuclear ribonucleoprotein A1
known_NIR_6043	chr15	10326631	10345744	+	10326631	10341860	A3SS&ES	ENSMUST00000145428.8	known	0.33	5	10	5	10	y	0.36	5	9	5	9	y	-	-	-	-	-	-	0.31	5	11	5	11	y	0.11	2	17	2	17	y	0.25	5	15	5	15	y	0.24	5	16	5	16	y	0.20	5	20	5	20	y	0.0180963189100198	3.80521195323595	up	ENSMUSG00000005268.21	Prlr	chr15	protein_coding	prolactin receptor
known_NIR_6086	chr15	25941329	25964310	+	25933712	25964310	A5SS	ENSMUST00000228327.2	known	0.51	22	21	22	21	y	0.61	19	12	19	12	y	0.83	104	21	104	21	y	0.56	33	26	33	26	y	0.22	8	29	8	29	y	0.42	25	35	25	35	y	0.27	8	22	8	22	y	0.41	33	47	33	47	y	0.0162711010227547	3.43762216877355	up	ENSMUSG00000022270.17	Retreg1	chr15	protein_coding	reticulophagy regulator 1
known_NIR_6092	chr15	27741365	27742458	-	27741365	27742390	5pMXE	ENSMUST00000227999.2	known	0.75	6	2	6	2	n	0.64	7	4	7	4	y	0.50	7	7	7	7	y	0.75	3	1	3	1	n	0.42	5	7	5	7	y	0.46	6	7	6	7	y	0.57	8	6	8	6	y	0.40	6	9	6	9	y	0.0369053331466188	2.80537225570232	up	ENSMUSG00000022263.11	Trio	chr15	protein_coding	triple functional domain (PTPRF interacting)
known_NIR_6106	chr15	31582183	31584111	+	31582219	31584111	A5SS	ENSMUST00000226951.2	known	0.03	15	481	15	481	y	0.04	17	437	17	437	y	0.04	9	208	9	208	y	0.04	24	575	24	575	y	0.04	20	436	20	436	y	0.05	43	757	43	757	y	0.05	27	510	27	510	y	0.05	24	444	24	444	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022235.16	Cmbl	chr15	protein_coding	carboxymethylenebutenolidase-like (Pseudomonas)
known_NIR_6116	chr15	3301649	3304143	+	3300307	3304143	A5SS	ENSMUST00000082424.12	known	0.65	26	14	26	14	y	0.76	25	8	25	8	y	0.81	26	6	26	6	y	0.64	27	15	27	15	y	0.59	16	11	16	11	y	0.50	23	23	23	23	y	0.64	23	13	23	13	y	0.57	26	20	26	20	y	0.0373046014145391	2.7544685102926	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
known_NIR_6150	chr15	3581167	3612482	-	3418195	3612482	A3SS	ENSMUST00000160343.8	known	0.67	6	3	6	3	n	0.75	3	1	3	1	n	-	-	-	-	-	-	0.89	8	1	8	1	n	0.00	0	3	0	3	n	0.30	3	7	3	7	y	0.00	0	2	0	2	n	0.60	3	2	3	2	n	0.0249546678342478	3.46366434819114	up	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
known_NIR_6219	chr15	54713523;54714818	54714744;54723439	-	54713523	54723439	cassetteExon	ENSMUST00000041591.16	known	0.03	2.5	74	4;1	74	n	0.02	1.5	62	1;2	62	n	0.05	5.0	106	5;5	106	y	0.03	3.5	107	3;4	107	y	0.01	1.0	97	2;0	97	n	0.01	1.0	142	2;0	142	n	0.02	2.0	84	2;2	84	y	0.01	1.5	143	0;3	143	n	0.0428004269752684	2.95419578350399	up	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
known_NIR_6244	chr15	58011837	58014002	+	58011829	58014002	A5SS	ENSMUST00000067563.9	known	0.18	2	9	2	9	y	0.23	3	10	3	10	y	0.14	3	18	3	18	y	0.22	2	7	2	7	n	0.33	7	14	7	14	y	0.26	5	14	5	14	y	0.22	4	14	4	14	y	0.33	5	10	5	10	y	0.0377280504668406	-2.71054391230555	down	ENSMUSG00000022359.11	Wdyhv1	chr15	protein_coding	WDYHV motif containing 1
known_NIR_6321	chr15	74827566;74829312	74829264;74829629	+	74827566	74829629	cassetteExon	ENSMUST00000189186.7	known	0.01	3.0	337	2;4	337	y	0.00	0.0	275	0;0	275	n	0.00	1.0	241	2;0	241	n	0.00	0.5	321	1;0	321	n	0.02	4.5	216	9;0	216	n	0.01	3.0	230	3;3	230	y	0.01	2.5	171	1;4	171	n	0.01	2.0	282	2;2	282	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
known_NIR_6341	chr15	75768768	75772981	-	75768768;75772611	75772540;75772981	ES	ENSMUST00000154584.9	known	0.31	123	275.0	123	244;306	y	0.31	133	299.5	133	302;297	y	0.36	166	297.5	166	288;307	y	0.30	112	264.0	112	253;275	y	0.27	86	236.0	86	240;232	y	0.25	110	330.5	110	303;358	y	0.28	121	305.0	121	297;313	y	0.28	128	329.5	128	321;338	y	0.0256233178356129	3.27326835353989	up	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6342	chr15	75768768	75772981	-	75772611	75772981	3pMXE	ENSMUST00000055220.7	known	0.29	123	306	123	306	y	0.31	133	297	133	297	y	0.35	166	307	166	307	y	0.29	112	275	112	275	y	0.27	86	232	86	232	y	0.24	110	358	110	358	y	0.28	121	313	121	313	y	0.27	128	338	128	338	y	0.042336665516253	2.71360210119987	up	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
known_NIR_6364	chr15	75867173	75867676	+	75867173	75867635	3pMXE	ENSMUST00000161961.2	known	0.77	10	3	10	3	y	0.85	11	2	11	2	y	0.75	3	1	3	1	n	0.68	15	7	15	7	y	0.71	10	4	10	4	y	0.48	10	11	10	11	y	0.62	18	11	18	11	y	0.59	23	16	23	16	y	0.03598065951637	2.75744071634173	up	ENSMUSG00000063704.14	Mapk15	chr15	protein_coding	mitogen-activated protein kinase 15
known_NIR_6404	chr15	76231989	76232096	-	76232007	76232096	A3SS	ENSMUST00000154477.8	known	0.69	11	5	11	5	y	0.50	9	9	9	9	y	1.00	8	0	8	0	n	0.60	6	4	6	4	y	0.33	3	6	3	6	n	0.39	7	11	7	11	y	0.47	9	10	9	10	y	0.00	0	9	0	9	n	0.0367639864627785	2.67684813810368	up	ENSMUSG00000022552.17	Sharpin	chr15	protein_coding	SHANK-associated RH domain interacting protein
known_NIR_6429	chr15	76384253	76384467	+	76384253	76384331	A3SS	ENSMUST00000228868.2	known	0.17	8	38	8	38	y	0.12	6	46	6	46	y	0.26	12	34	12	34	y	0.23	10	33	10	33	y	0.03	1	32	1	32	n	0.11	5	42	5	42	y	0.07	4	56	4	56	y	0.05	3	56	3	56	y	0.0167210191484757	3.65268466516861	up	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6430	chr15	76384253	76384467	+	76384253;76384396	76384331;76384467	ES	ENSMUST00000228757.2	known	0.21	8	31.0	8	38;24	y	0.13	6	39.0	6	46;32	y	0.31	12	27.0	12	34;20	y	0.28	10	26.0	10	33;19	y	0.03	1	31.0	1	32;30	n	0.12	5	36.0	5	42;30	y	0.08	4	47.0	4	56;38	y	0.06	3	48.5	3	56;41	y	0.020156506557424	3.61172894709184	up	ENSMUSG00000022556.12	Hsf1	chr15	protein_coding	heat shock factor 1
known_NIR_6498	chr15	78349508	78352626	-	78349543	78352626	A3SS	ENSMUST00000017086.5	known	0.23	111	375	111	375	y	0.25	87	260	87	260	y	0.28	52	134	52	134	y	0.24	147	476	147	476	y	0.20	95	379	95	379	y	0.21	172	639	172	639	y	0.21	108	413	108	413	y	0.23	164	554	164	554	y	0.031474374342847	3	up	ENSMUSG00000016942.7	Tmprss6	chr15	protein_coding	transmembrane serine protease 6
known_NIR_6578	chr15	81882500	81883706	-	81882433	81883706	A3SS	ENSMUST00000146628.8	known	0.01	1	165	1	165	n	0.01	1	145	1	145	n	0.00	1	232	1	232	n	0.01	1	163	1	163	n	0.02	2	128	2	128	y	0.02	4	212	4	212	y	0.01	1	151	1	151	n	0.02	3	191	3	191	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000022472.17	Desi1	chr15	protein_coding	desumoylating isopeptidase 1
known_NIR_6642	chr15	83019590	83022333	-	83019590;83021755	83021669;83022333	ES	ENSMUST00000058793.14	known	0.13	5	34.0	5	36;32	y	0.11	3	24.0	3	20;28	y	0.11	5	40.5	5	38;43	y	0.05	2	40.0	2	36;44	y	0.03	1	33.5	1	20;47	n	0.02	1	61.5	1	53;70	n	0.03	1	28.0	1	23;33	n	0.06	3	51.5	3	35;68	y	0.024444082310131	3.35658556671309	up	ENSMUSG00000041815.15	Poldip3	chr15	protein_coding	polymerase (DNA-directed), delta interacting protein 3
known_NIR_6643	chr15	83019590	83022333	-	83021755	83022333	3pMXE	ENSMUST00000149802.2	known	0.14	5	32	5	32	y	0.10	3	28	3	28	y	0.10	5	43	5	43	y	0.04	2	44	2	44	y	0.02	1	47	1	47	n	0.01	1	70	1	70	n	0.03	1	33	1	33	n	0.04	3	68	3	68	y	0.0371183653922297	3.24037034920393	up	ENSMUSG00000041815.15	Poldip3	chr15	protein_coding	polymerase (DNA-directed), delta interacting protein 3
known_NIR_6845	chr16	11224760	11231090	+	11221696	11231090	A5SS	ENSMUST00000180792.8	known	0.00	0	7	0	7	n	0.00	0	4	0	4	n	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.36	4	7	4	7	y	0.08	1	11	1	11	n	0.33	3	6	3	6	n	0.25	1	3	1	3	n	0.0357142559081495	-2.80287482511229	down	ENSMUSG00000071669.15	Snx29	chr16	protein_coding	sorting nexin 29
known_NIR_6871	chr16	13988355	14001340	+	13988355;13993303	13993155;14001340	ES	ENSMUST00000023359.13	known	0.05	2	34.5	2	40;29	y	0.08	4	43.5	4	40;47	y	0.04	2	50.5	2	49;52	y	0.05	3	58.0	3	54;62	y	0.00	0	41.0	0	42;40	n	0.04	3	68.0	3	68;68	y	0.00	0	41.5	0	48;35	n	0.02	1	51.0	1	50;52	n	0.0214358947332461	3.09838667696593	up	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6872	chr16	13988355	14001340	+	13993303	14001340	5pMXE	ENSMUST00000156041.2	known	0.06	2	29	2	29	y	0.08	4	47	4	47	y	0.04	2	52	2	52	y	0.05	3	62	3	62	y	0.00	0	40	0	40	n	0.04	3	68	3	68	y	0.00	0	35	0	35	n	0.02	1	52	1	52	n	0.0164585501848393	3.31280599255432	up	ENSMUSG00000022678.17	Nde1	chr16	protein_coding	nudE neurodevelopment protein 1
known_NIR_6987	chr16	18230707	18243054	-	18230707	18232016	5pMXE	ENSMUST00000165430.8	known	0.73	635	232	635	232	y	0.79	556	144	556	144	y	0.95	506	25	506	25	y	0.62	811	503	811	503	y	0.54	611	513	611	513	y	0.58	934	687	934	687	y	0.43	635	837	635	837	y	0.68	685	321	685	321	y	0.0497763237169738	2.49721598779788	up	ENSMUSG00000000326.14	Comt	chr16	protein_coding	catechol-O-methyltransferase
known_NIR_7047	chr16	20537419	20537574	+	20536744	20537574	A5SS	ENSMUST00000021405.8	known	0.04	2	47	2	47	y	0.05	2	38	2	38	y	0.09	3	31	3	31	y	0.09	4	41	4	41	y	0.00	0	26	0	26	n	0.06	3	45	3	45	y	0.02	1	50	1	50	n	0.00	0	49	0	49	n	0.0493485748360164	2.45973155641199	up	ENSMUSG00000021018.9	Polr2h	chr16	protein_coding	polymerase (RNA) II (DNA directed) polypeptide H
known_NIR_7061	chr16	21614725	21619525	+	21614725	21625721	A3SS	ENSMUST00000211443.2	known	0.90	9	1	9	1	n	1.00	14	0	14	0	n	1.00	18	0	18	0	n	1.00	9	0	9	0	n	0.64	14	8	14	8	y	0.87	13	2	13	2	y	0.63	12	7	12	7	y	0.58	7	5	7	5	y	0.0140179956002685	4.25426689670769	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7064	chr16	21614725	21627428	+	21614725;21625869	21625721;21627428	ES	ENSMUST00000211443.2	known	0.91	25	2.5	25	1;4	n	1.00	26	0.0	26	0;0	n	0.94	25	1.5	25	0;3	n	0.95	29	1.5	29	0;3	n	0.82	25	5.5	25	8;3	y	0.86	34	5.5	34	2;9	y	0.82	32	7.0	32	7;7	y	0.72	17	6.5	17	5;8	y	0.00906240282950871	4.1149587976115	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7065	chr16	21614725;21625869	21625721;21627428	+	21614725;21621847	21619465;21627428	MXE	ENSMUST00000209728.2	known	0.24	2.5	8.0	1;4	8;8	n	0.00	0.0	2.0	0;0	4;0	n	0.17	1.5	7.5	0;3	9;6	n	0.16	1.5	8.0	0;3	14;2	n	0.52	5.5	5.0	8;3	5;5	y	0.32	5.5	11.5	2;9	21;2	y	0.50	7.0	7.0	7;7	13;1	n	0.54	6.5	5.5	5;8	10;1	n	0.00381764337806529	-4.56822354930589	down	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
known_NIR_7126	chr16	23298890	23302145	-	23295154	23302145	A3SS	ENSMUST00000089883.7	known	0.05	6	126	6	126	y	0.05	5	93	5	93	y	0.04	7	190	7	190	y	0.04	7	170	7	170	y	0.02	2	129	2	129	y	0.02	4	185	4	185	y	0.03	4	132	4	132	y	0.02	4	182	4	182	y	0.00114013066076554	5.89188303637179	up	ENSMUSG00000022887.10	Masp1	chr16	protein_coding	mannan-binding lectin serine peptidase 1
known_NIR_7176	chr16	31911303;31914526	31914371;31915818	-	31911303	31915818	cassetteExon	ENSMUST00000232321.2	known	0.07	3.0	40	5;1	40	n	0.09	3.0	32	4;2	32	y	0.12	6.0	43	8;4	43	y	0.10	4.0	36	3;5	36	y	0.14	4.0	25	5;3	25	y	0.17	8.5	43	11;6	43	y	0.16	6.5	34	9;4	34	y	0.15	6.5	37	9;4	37	y	0.00445361010917431	-4.89897948556636	down	ENSMUSG00000023791.19	Pigx	chr16	protein_coding	phosphatidylinositol glycan anchor biosynthesis, class X
known_NIR_7201	chr16	32677415	32697633	-	32677415	32688463	5pMXE	ENSMUST00000115105.9	known	0.29	2	5	2	5	n	0.33	1	2	1	2	n	0.20	1	4	1	4	n	0.44	4	5	4	5	n	0.56	5	4	5	4	n	0.75	6	2	6	2	n	1.00	5	0	5	0	n	0.71	5	2	5	2	n	0.00972640452308893	-4.23063885066378	down	ENSMUSG00000035629.20	Rubcn	chr16	protein_coding	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
known_NIR_7213	chr16	32877275	32877506	+	32876925	32877506	A5SS	ENSMUST00000115079.8	known	0.03	4	113	4	113	y	0.04	5	116	5	116	y	0.02	2	103	2	103	y	0.04	5	113	5	113	y	0.06	6	96	6	96	y	0.09	11	114	11	114	y	0.05	5	99	5	99	y	0.08	12	131	12	131	y	0.017711293154785	-3.63803437554499	down	ENSMUSG00000060636.15	Rpl35a	chr16	protein_coding	ribosomal protein L35A
known_NIR_7244	chr16	35892507	35905387	+	35892507;35903186	35903061;35905387	ES	ENSMUST00000164916.9	known	0.01	1	125.5	1	94;157	n	0.01	1	127.0	1	96;158	n	0.01	2	135.5	2	91;180	y	0.01	2	150.5	2	112;189	y	0.04	6	151.0	6	124;178	y	0.02	4	184.0	4	154;214	y	0.05	7	136.0	7	93;179	y	0.03	5	162.0	5	112;212	y	0.030466291662171	-3.87298334620742	down	ENSMUSG00000075229.12	Ccdc58	chr16	protein_coding	coiled-coil domain containing 58
known_NIR_7258	chr16	3713664	3715115	+	3702670	3715115	A5SS	ENSMUST00000176625.8	known	0.20	2	8	2	8	y	0.00	0	4	0	4	n	0.36	5	9	5	9	y	0.23	3	10	3	10	y	0.38	3	5	3	5	n	0.52	15	14	15	14	y	0.50	6	6	6	6	y	0.33	4	8	4	8	y	0.0435347685873803	-2.68461874649444	down	ENSMUSG00000005982.15	Naa60	chr16	protein_coding	N(alpha)-acetyltransferase 60, NatF catalytic subunit
known_NIR_7274	chr16	38369998	38370445	-	38369795	38370445	A3SS	ENSMUST00000036210.7	known	0.00	0	13	0	13	n	0.00	0	6	0	6	n	0.13	2	13	2	13	y	0.11	2	17	2	17	y	0.33	2	4	2	4	n	0.24	5	16	5	16	y	0.18	2	9	2	9	y	0.17	4	20	4	20	y	0.0153761384210973	-3.35555364429482	down	ENSMUSG00000034064.15	Poglut1	chr16	protein_coding	protein O-glucosyltransferase 1
known_NIR_7320	chr16	4520172	4524432	+	4520172;4523824	4523708;4524432	ES	ENSMUST00000060067.12	known	0.86	295	47.5	295	45;50	y	0.86	263	41.5	263	39;44	y	0.83	330	68.5	330	79;58	y	0.85	233	42.0	233	45;39	y	0.87	223	33.0	223	26;40	y	0.90	355	38.0	355	36;40	y	0.87	273	40.5	273	46;35	y	0.92	286	26.5	286	26;27	y	0.0384775492642787	-2.82842712474619	down	ENSMUSG00000004069.18	Dnaja3	chr16	protein_coding	DnaJ heat shock protein family (Hsp40) member A3
known_NIR_7362	chr16	4772740	4773722	-	4771818	4773722	A3SS	ENSMUST00000023157.6	known	0.12	3	22	3	22	y	0.14	4	24	4	24	y	0.07	3	40	3	40	y	0.06	1	17	1	17	n	0.00	0	12	0	12	n	0.04	2	47	2	47	y	0.00	0	18	0	18	n	0.00	0	21	0	21	n	0.0124868389221995	4.02360874250657	up	ENSMUSG00000022515.7	Anks3	chr16	protein_coding	ankyrin repeat and sterile alpha motif domain containing 3
known_NIR_7491	chr16	90535557	90544263	+	90535557	90543530	A3SS&ES	ENSMUST00000125429.3	known	0.15	5	28	5	28	y	0.21	6	22	6	22	y	0.30	15	35	15	35	y	0.19	5	22	5	22	y	0.36	8	14	8	14	y	0.39	12	19	12	19	y	0.52	12	11	12	11	y	0.32	6	13	6	13	y	0.015692887665257	-3.44777031076234	down	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7493	chr16	90535557	90544412	+	90535557	90544263	A3SS	ENSMUST00000138984.8	known	0.98	271	5	271	5	y	0.97	213	6	213	6	y	0.97	502	15	502	15	y	0.98	222	5	222	5	y	0.96	187	8	187	8	y	0.96	262	12	262	12	y	0.96	258	12	258	12	y	0.97	198	6	198	6	y	0.0174670498044487	3.2732683535399	up	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7494	chr16	90535557	90544412	+	90535557;90543614	90543530;90544412	ES	ENSMUST00000125429.3	known	0.92	271	23.5	271	28;19	y	0.92	213	18.0	213	22;14	y	0.93	502	35.0	502	35;35	y	0.93	222	16.5	222	22;11	y	0.93	187	14.5	187	14;15	y	0.94	262	16.5	262	19;14	y	0.96	258	11.5	258	11;12	y	0.95	198	10.5	198	13;8	y	0.0453983125632169	-2.82842712474618	down	ENSMUSG00000039956.10	Mrap	chr16	protein_coding	melanocortin 2 receptor accessory protein
known_NIR_7602	chr17	13135516	13136930	+	13136770	13136930	A5SS&ES	ENSMUST00000147724.8	known	0.04	7	187	7	187	y	0.04	6	154	6	154	y	0.03	7	197	7	197	y	0.03	9	263	9	263	y	0.01	1	158	1	158	n	0.01	2	263	2	263	y	0.02	5	220	5	220	y	0.01	3	288	3	288	y	0.00114013066076554	5.89188303637179	up	ENSMUSG00000068039.14	Tcp1	chr17	protein_coding	t-complex protein 1
known_NIR_7603	chr17	13135516;13136770	13136685;13136930	+	13135516	13136930	cassetteExon	ENSMUST00000089024.13	known	0.96	176.5	7	166;187	7	y	0.96	151.0	6	148;154	6	y	0.97	197.0	7	197;197	7	y	0.97	266.5	9	270;263	9	y	0.99	166.0	1	174;158	1	n	0.99	278.0	2	293;263	2	y	0.98	205.5	5	191;220	5	y	0.99	278.5	3	269;288	3	y	0.00114013066076552	-5.89188303637181	down	ENSMUSG00000068039.14	Tcp1	chr17	protein_coding	t-complex protein 1
known_NIR_7611	chr17	14109239;14111260	14111225;14116350	+	14109239	14116350	cassetteExon	ENSMUST00000170827.9	known	0.03	2.5	78	2;3	78	y	0.01	1.0	71	1;1	71	n	0.02	5.0	225	2;8	225	y	0.02	2.5	122	2;3	122	y	0.01	0.5	57	0;1	57	n	0.01	1.0	81	0;2	81	n	0.00	0.0	50	0;0	50	n	0.01	1.0	108	1;1	108	n	0.0478566196408534	2.61116483933547	up	ENSMUSG00000068036.17	Afdn	chr17	protein_coding	afadin, adherens junction formation factor
known_NIR_7648	chr17	22665874	22670060	+	22665874	22670078	A3SS	ENSMUST00000120222.8	known	0.14	3	18	3	18	y	0.23	7	23	7	23	y	0.11	2	16	2	16	y	0.25	10	30	10	30	y	0.00	0	24	0	24	n	0.03	1	36	1	36	n	0.00	0	17	0	17	n	0.15	4	23	4	23	y	0.03171528274408	2.78861069609867	up	ENSMUSG00000071266.14	Zfp946	chr17	protein_coding	zinc finger protein 946
known_NIR_7746	chr17	25077283	25079920	+	25076598	25079920	A5SS	ENSMUST00000164251.8	known	0.00	3	1318	3	1318	y	0.00	3	1177	3	1177	y	0.00	0	506	0	506	n	0.00	3	1459	3	1459	y	0.01	15	1193	15	1193	y	0.01	20	1819	20	1819	y	0.02	29	1565	29	1565	y	0.01	19	1665	19	1665	y	0.0153924380733023	-5	down	ENSMUSG00000024158.18	Hagh	chr17	protein_coding	hydroxyacyl glutathione hydrolase
known_NIR_7789	chr17	25488453	25492295	-	25488453	25493136	A5SS	ENSMUST00000173713.8	known	0.75	77	26	77	26	y	0.69	46	21	46	21	y	0.68	74	35	74	35	y	0.65	82	45	82	45	y	0.50	47	47	47	47	y	0.57	97	73	97	73	y	0.58	52	38	52	38	y	0.64	75	42	75	42	y	0.0170668091702581	3.3772682147054	up	ENSMUSG00000015120.16	Ube2i	chr17	protein_coding	ubiquitin-conjugating enzyme E2I
known_NIR_7809	chr17	26003699	26004402	-	26003699	26003978	5pMXE	ENSMUST00000129917.8	known	0.07	2	26	2	26	y	0.03	1	28	1	28	n	0.06	2	30	2	30	y	0.09	2	20	2	20	y	0.11	2	16	2	16	y	0.15	5	29	5	29	y	0.26	9	25	9	25	y	0.17	4	20	4	20	y	0.0331582358207878	-3.22623653046977	down	ENSMUSG00000061046.10	Haghl	chr17	protein_coding	hydroxyacylglutathione hydrolase-like
known_NIR_7843	chr17	26311126;26311531	26311481;26312591	-	26311126	26312591	cassetteExon	ENSMUST00000236967.2	known	0.17	2.5	12	2;3	12	y	0.17	2.0	10	1;3	10	n	-	-	-	-	-	-	0.10	1.5	14	1;2	14	n	0.00	0.0	7	0;0	7	n	0.00	0.0	13	0;0	13	n	0.11	1.5	12	0;3	12	n	0.05	0.5	10	0;1	10	n	0.0289046039731788	3.04416956258876	up	ENSMUSG00000024177.10	Nme4	chr17	protein_coding	NME/NM23 nucleoside diphosphate kinase 4
known_NIR_7907	chr17	27775723	27778507	+	27775685	27778507	A5SS	ENSMUST00000232265.2	known	0.23	13	44	13	44	y	0.27	16	43	16	43	y	0.25	10	30	10	30	y	0.33	13	26	13	26	y	0.20	9	35	9	35	y	0.18	16	71	16	71	y	0.24	11	34	11	34	y	0.17	9	44	9	44	y	0.0379031009879913	2.72809051831243	up	ENSMUSG00000046711.17	Hmga1	chr17	protein_coding	high mobility group AT-hook 1
known_NIR_7925	chr17	28195691	28204040	+	28195691;28197463	28197401;28204040	ES	ENSMUST00000114842.9	known	0.91	5	0.5	5	0;1	n	0.80	4	1.0	4	2;0	n	0.50	4	4.0	4	4;4	y	0.88	11	1.5	11	2;1	n	0.00	0	0.5	0	0;1	n	0.56	5	4.0	5	3;5	y	0.00	0	1.5	0	2;1	n	0.56	7	5.5	7	6;5	y	0.0480063672110039	2.63542693953221	up	ENSMUSG00000024219.17	Anks1	chr17	protein_coding	ankyrin repeat and SAM domain containing 1
known_NIR_7935	chr17	28537381	28537792	+	28537381	28539764	A3SS	ENSMUST00000114803.9	known	0.05	1	20	1	20	n	0.08	2	23	2	23	y	0.00	0	15	0	15	n	0.00	0	21	0	21	n	0.13	3	20	3	20	y	0.04	2	43	2	43	y	0.12	3	22	3	22	y	0.14	4	25	4	25	y	0.0484695262732276	-2.4828176658071	down	ENSMUSG00000007570.17	Fance	chr17	protein_coding	Fanconi anemia, complementation group E
known_NIR_8036	chr17	31378061	31379624	+	31378061	31380395	A3SS	ENSMUST00000148215.9	known	0.06	1	15	1	15	n	0.00	0	23	0	23	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.15	2	11	2	11	y	0.10	3	26	3	26	y	0.21	4	15	4	15	y	0.27	4	11	4	11	y	0.0137880867867873	-4.21225391019494	down	ENSMUSG00000086010.9	Gm15318	chr17	lncRNA	predicted gene 15318
known_NIR_8133	chr17	33149636	33165779	-	33160174	33165779	3pMXE	ENSMUST00000146718.2	known	0.01	1	145	1	145	n	0.02	2	98	2	98	y	0.01	1	98	1	98	n	0.02	4	179	4	179	y	0.00	0	170	0	170	n	0.00	1	214	1	214	n	0.00	0	166	0	166	n	0.01	2	195	2	195	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8151	chr17	33165977	33166310	-	33165977	33166287	A5SS	ENSMUST00000075253.13	known	0.00	0	102	0	102	n	0.00	0	66	0	66	n	0.00	0	71	0	71	n	0.00	0	147	0	147	n	0.02	2	113	2	113	y	0.01	1	146	1	146	n	0.02	2	131	2	131	y	0.01	2	162	2	162	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000024055.16	Cyp4f13	chr17	protein_coding	cytochrome P450, family 4, subfamily f, polypeptide 13
known_NIR_8156	chr17	33757686	33762172	+	33757669	33762172	A5SS	ENSMUST00000173931.8	known	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.33	1	2	1	2	n	0.75	3	1	3	1	n	0.14	1	6	1	6	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.45	5	6	5	6	y	0.0338185917731705	2.74205865992291	up	ENSMUSG00000024299.18	Adamts10	chr17	protein_coding	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10
known_NIR_8179	chr17	33999617	33999757	-	33999621	33999757	A3SS	ENSMUST00000002360.17	known	0.03	6	201	6	201	y	0.06	15	236	15	236	y	0.02	7	327	7	327	y	0.04	10	269	10	269	y	0.08	9	100	9	100	y	0.06	21	317	21	317	y	0.05	10	200	10	200	y	0.10	20	185	20	185	y	0.0490306765884853	-2.50106360353674	down	ENSMUSG00000002289.17	Angptl4	chr17	protein_coding	angiopoietin-like 4
known_NIR_8313	chr17	35340774	35342029	+	35340774	35341205	3pMXE	ENSMUST00000177018.2	known	0.83	10	2	10	2	y	0.70	14	6	14	6	y	0.82	18	4	18	4	y	0.81	13	3	13	3	y	1.00	10	0	10	0	n	0.90	18	2	18	2	y	0.86	24	4	24	4	y	0.93	13	1	13	1	n	0.0202857006350757	-3.13213097911219	down	ENSMUSG00000092417.4	Gpank1	chr17	protein_coding	G patch domain and ankyrin repeats 1
known_NIR_8393	chr17	37163585	37167094	+	37163585;37165193	37165176;37167094	ES	ENSMUST00000130367.8	known	0.84	41	8.0	41	9;7	y	0.79	24	6.5	24	9;4	y	0.84	31	6.0	31	6;6	y	0.77	48	14.5	48	17;12	y	0.70	33	14.0	33	16;12	y	0.75	55	18.5	55	20;17	y	0.71	39	16.0	39	16;16	y	0.67	33	16.0	33	19;13	y	0.00562148477714992	4.22134907178567	up	ENSMUSG00000024457.17	Trim26	chr17	protein_coding	tripartite motif-containing 26
known_NIR_8408	chr17	44413555	44416602	-	44413555	44416540	A5SS	ENSMUST00000024757.14	known	0.25	1	3	1	3	n	0.00	0	3	0	3	n	0.44	7	9	7	9	y	0.62	8	5	8	5	y	-	-	-	-	-	-	0.75	3	1	3	1	n	0.67	2	1	2	1	n	1.00	3	0	3	0	n	0.0344875405205249	-2.8894472361809	down	ENSMUSG00000023961.17	Enpp4	chr17	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 4
known_NIR_8430	chr17	45903187	45906408	-	45903187	45910399	A5SS	ENSMUST00000171847.8	known	0.61	17	11	17	11	y	0.58	15	11	15	11	y	0.60	12	8	12	8	y	0.55	21	17	21	17	y	0.50	11	11	11	11	y	0.47	22	25	22	25	y	0.55	16	13	16	13	y	0.51	29	28	29	28	y	0.0114627873373886	3.66187142395543	up	ENSMUSG00000023942.16	Slc29a1	chr17	protein_coding	solute carrier family 29 (nucleoside transporters), member 1
known_NIR_8455	chr17	46329805;46333274	46333203;46334991	-	46329805;46332048	46331917;46334991	MXE	ENSMUST00000071648.12	known	0.12	33.0	244.0	2;64	371;117	y	0.13	26.0	181.5	2;50	276;87	y	0.10	30.5	289.5	1;60	391;188	n	0.14	35.5	221.5	0;71	326;117	n	0.15	40.5	234.0	1;80	344;124	n	0.14	47.0	294.0	1;93	420;168	n	0.16	46.0	242.5	5;87	353;132	y	0.15	54.0	311.5	4;104	469;154	y	0.0401694278344841	-2.90548799087456	down	ENSMUSG00000023951.19	Vegfa	chr17	protein_coding	vascular endothelial growth factor A
known_NIR_8567	chr17	56904815	56905644	+	56904815	56906623	A3SS	ENSMUST00000182951.8	known	0.77	36	11	36	11	y	0.76	28	9	28	9	y	0.77	48	14	48	14	y	0.88	37	5	37	5	y	0.88	43	6	43	6	y	0.93	40	3	40	3	y	0.93	28	2	28	2	y	0.96	52	2	52	2	y	0.0116275744957036	-3.9496835316263	down	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8568	chr17	56904815	56906623	+	56904815;56906220	56905644;56906623	ES	ENSMUST00000182533.8	known	0.17	11	53.0	11	36;70	y	0.23	9	30.5	9	28;33	y	0.19	14	60.5	14	48;73	y	0.10	5	44.0	5	37;51	y	0.14	6	37.0	6	43;31	y	0.05	3	55.5	3	40;71	y	0.06	2	34.0	2	28;40	y	0.04	2	49.5	2	52;47	y	0.0315534751112591	2.81439017892117	up	ENSMUSG00000071054.13	Safb	chr17	protein_coding	scaffold attachment factor B
known_NIR_8613	chr17	64600019	64615617	-	64604904	64615617	3pMXE	ENSMUST00000232842.2	known	0.34	12	23	12	23	y	0.26	9	25	9	25	y	0.16	13	69	13	69	y	0.27	17	45	17	45	y	0.39	14	22	14	22	y	0.38	18	30	18	30	y	0.35	7	13	7	13	y	0.37	23	40	23	40	y	0.0496743900818855	-3.02439647920053	down	ENSMUSG00000024083.17	Pja2	chr17	protein_coding	praja ring finger ubiquitin ligase 2
known_NIR_8616	chr17	66090663	66110206	+	66090663	66110155	A3SS	ENSMUST00000161324.8	known	0.71	12	5	12	5	y	0.73	11	4	11	4	y	0.83	20	4	20	4	y	0.67	18	9	18	9	y	0.67	4	2	4	2	n	0.56	14	11	14	11	y	0.50	7	7	7	7	y	0.38	8	13	8	13	y	0.0326435457562471	2.99046515935575	up	ENSMUSG00000061950.18	Ppp4r1	chr17	protein_coding	protein phosphatase 4, regulatory subunit 1
known_NIR_8624	chr17	66418726	66420858	+	66418644	66420858	A5SS	ENSMUST00000072383.14	known	0.19	4	17	4	17	y	0.12	3	21	3	21	y	0.00	0	24	0	24	n	0.26	6	17	6	17	y	0.39	7	11	7	11	y	0.42	10	14	10	14	y	0.46	6	7	6	7	y	0.29	6	15	6	15	y	0.0126852206613291	-3.73562741683872	down	ENSMUSG00000024101.16	Washc1	chr17	protein_coding	WASH complex subunit 1
known_NIR_8630	chr17	69690415	69692416	+	69690264	69692416	A5SS	ENSMUST00000112674.8	known	0.80	4	1	4	1	n	-	-	-	-	-	-	0.67	2	1	2	1	n	0.83	5	1	5	1	n	0.33	1	2	1	2	n	0.67	4	2	4	2	n	0.50	6	6	6	6	y	0.50	3	3	3	3	n	0.0264096950101504	3.13665198951129	up	ENSMUSG00000049672.16	Zbtb14	chr17	protein_coding	zinc finger and BTB domain containing 14
known_NIR_8694	chr17	74922352	74925431	+	74922325	74925431	A5SS	ENSMUST00000180037.8	known	0.00	0	5	0	5	n	0.00	0	4	0	4	n	0.08	1	11	1	11	n	0.20	2	8	2	8	y	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.38	3	5	3	5	n	0.11	2	16	2	16	y	0.0483153826866759	-2.57951318670681	down	ENSMUSG00000024073.17	Birc6	chr17	protein_coding	baculoviral IAP repeat-containing 6
known_NIR_8727	chr17	80351994;80352451	80352369;80356037	-	80351994	80356037	cassetteExon	ENSMUST00000184635.8	known	0.21	7.5	29	6;9	29	y	0.25	6.5	20	6;7	20	y	0.12	10.0	70	8;12	70	y	0.18	9.5	44	11;8	44	y	0.10	5.5	48	5;6	48	y	0.05	3.0	52	4;2	52	y	0.10	4.5	41	3;6	41	y	0.12	8.0	58	6;10	58	y	0.0288708256737939	3.1258403580998	up	ENSMUSG00000024095.16	Hnrnpll	chr17	protein_coding	heterogeneous nuclear ribonucleoprotein L-like
known_NIR_8733	chr17	80533193	80535167	+	80533193	80533954	3pMXE	ENSMUST00000156869.2	known	0.93	26	2	26	2	y	0.91	31	3	31	3	y	0.98	48	1	48	1	n	0.92	24	2	24	2	y	0.71	15	6	15	6	y	0.87	34	5	34	5	y	0.86	32	5	32	5	y	0.81	26	6	26	6	y	0.0363240071763431	3.08060360596347	up	ENSMUSG00000055760.13	Gemin6	chr17	protein_coding	gem nuclear organelle associated protein 6
known_NIR_8738	chr17	83527585	83528482	+	83527585	83528395	A3SS	ENSMUST00000170794.8	known	0.00	0	35	0	35	n	0.00	0	44	0	44	n	0.00	0	59	0	59	n	0.00	0	47	0	47	n	0.07	3	40	3	40	y	0.03	2	59	2	59	y	0.02	1	49	1	49	n	0.03	2	57	2	57	y	0.0430149067349815	-3.38240712601273	down	ENSMUSG00000024247.15	Pkdcc	chr17	protein_coding	protein kinase domain containing, cytoplasmic
known_NIR_8741	chr17	8391840	8401060	+	8391840	8394351	3pMXE	ENSMUST00000162586.2	known	0.92	36	3	36	3	y	0.92	24	2	24	2	y	0.85	40	7	40	7	y	0.94	30	2	30	2	y	1.00	28	0	28	0	n	0.92	35	3	35	3	y	1.00	25	0	25	0	n	1.00	42	0	42	0	n	0.0417695628347326	-2.58011474249358	down	ENSMUSG00000069135.12	Cep43	chr17	protein_coding	centrosomal protein 43
known_NIR_8753	chr17	84990722	84994048	+	84990722	84994045	A3SS	ENSMUST00000045714.15	known	0.57	43	32	43	32	y	0.56	39	31	39	31	y	0.49	59	61	59	61	y	0.58	68	49	68	49	y	0.64	63	35	63	35	y	0.64	77	43	77	43	y	0.74	82	29	82	29	y	0.66	121	61	121	61	y	0.0090807867135966	-3.82675682485969	down	ENSMUSG00000024254.16	Abcg8	chr17	protein_coding	ATP binding cassette subfamily G member 8
known_NIR_8754	chr17	84994149;84996116	84995960;84999228	+	84994149	84999228	cassetteExon	ENSMUST00000170725.8	known	0.89	56.5	7	54;59	7	y	0.91	48.0	5	46;50	5	y	0.94	91.5	6	83;100	6	y	0.93	95.0	7	94;96	7	y	0.96	88.5	4	81;96	4	y	0.96	118.0	5	104;132	5	y	0.97	75.0	2	84;66	2	y	0.95	134.5	7	132;137	7	y	0.0248919711132918	-3.59726264087885	down	ENSMUSG00000024254.16	Abcg8	chr17	protein_coding	ATP binding cassette subfamily G member 8
known_NIR_8877	chr18	24604037	24604119	+	24604037	24608582	A3SS	ENSMUST00000234303.2	known	1.00	24	0	24	0	n	1.00	28	0	28	0	n	1.00	22	0	22	0	n	1.00	30	0	30	0	n	0.90	18	2	18	2	y	0.97	29	1	29	1	n	0.86	25	4	25	4	y	0.93	39	3	39	3	y	0.0354380941680295	3.65218585760111	up	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
known_NIR_8888	chr18	32064603	32074690	+	32064603	32074793	A3SS	ENSMUST00000025254.9	known	0.05	7	125	7	125	y	0.09	10	103	10	103	y	0.07	5	62	5	62	y	0.09	10	106	10	106	y	0.03	2	76	2	76	y	0.05	6	119	6	119	y	0.03	3	103	3	103	y	0.06	4	64	4	64	y	0.0389814444523074	2.67223596832737	up	ENSMUSG00000024395.10	Lims2	chr18	protein_coding	LIM and senescent cell antigen like domains 2
known_NIR_8894	chr18	32269000	32271001	-	32269000	32271182	A5SS	ENSMUST00000234651.2	known	0.01	5	480	5	480	y	0.02	8	493	8	493	y	0.02	5	295	5	295	y	0.01	8	645	8	645	y	0.03	14	516	14	516	y	0.03	22	790	22	790	y	0.02	12	585	12	585	y	0.02	15	724	15	724	y	0.0498252627805767	-2.44948974278318	down	ENSMUSG00000024386.10	Proc	chr18	protein_coding	protein C
known_NIR_8901	chr18	32558020	32565036	+	32558020;32564795	32564724;32565036	ES	ENSMUST00000234857.2	known	0.67	21	10.5	21	6;15	y	0.57	16	12.0	16	9;15	y	0.57	21	16.0	21	10;22	y	0.64	21	12.0	21	12;12	y	0.79	15	4.0	15	2;6	y	0.74	21	7.5	21	7;8	y	0.69	22	10.0	22	11;9	y	0.68	25	11.5	25	6;17	y	0.0199932666787928	-3.1429363309631	down	ENSMUSG00000024381.17	Bin1	chr18	protein_coding	bridging integrator 1
known_NIR_8984	chr18	35571433;35626286	35625912;35631844	-	35571433	35631844	cassetteExon	ENSMUST00000235619.2	known	0.03	6.0	175	3;9	175	y	0.04	5.0	130	4;6	130	y	0.02	4.0	203	4;4	203	y	0.03	6.0	190	8;4	190	y	0.01	2.0	162	0;4	162	n	0.01	2.5	232	2;3	232	y	0.02	3.0	179	5;1	179	n	0.02	3.5	189	3;4	189	y	0.0273393097919095	3	up	ENSMUSG00000024357.11	Sil1	chr18	protein_coding	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
known_NIR_8990	chr18	35695345	35710611	+	35690422	35710611	A5SS	ENSMUST00000237592.2	known	-	-	-	-	-	-	0.83	5	1	5	1	n	0.80	8	2	8	2	y	0.78	7	2	7	2	n	0.91	10	1	10	1	n	1.00	10	0	10	0	n	1.00	3	0	3	0	n	1.00	9	0	9	0	n	0.00152333348261103	-6.50273603894973	down	ENSMUSG00000117694.2	Snhg4	chr18	protein_coding	small nucleolar RNA host gene 4
known_NIR_9043	chr18	36787319	36788476	+	36787319	36788527	A3SS	ENSMUST00000006205.14	known	0.73	47	17	47	17	y	0.84	66	13	66	13	y	0.81	75	18	75	18	y	0.77	49	15	49	15	y	0.69	31	14	31	14	y	0.70	58	25	58	25	y	0.63	37	22	37	22	y	0.70	40	17	40	17	y	0.0126152602876399	3.67373792818207	up	ENSMUSG00000024483.20	Ankhd1	chr18	protein_coding	ankyrin repeat and KH domain containing 1
known_NIR_9175	chr18	60659437	60659673	+	60659437	60667665	A3SS	ENSMUST00000223984.2	known	0.23	6	20	6	20	y	0.20	3	12	3	12	y	0.18	6	27	6	27	y	0.28	12	31	12	31	y	0.47	8	9	8	9	y	0.28	12	31	12	31	y	0.45	9	11	9	11	y	0.39	13	20	13	20	y	0.0179880585157322	-3.65231199928332	down	ENSMUSG00000024603.9	Dctn4	chr18	protein_coding	dynactin 4
known_NIR_9193	chr18	60965067	60965499	-	60965067;60965381	60965238;60965499	ES	ENSMUST00000175934.8	known	0.25	2	6.0	2	9;3	y	0.17	1	5.0	1	2;8	n	0.20	2	8.0	2	10;6	y	0.25	2	6.0	2	2;10	y	0.00	0	5.0	0	6;4	n	0.12	1	7.5	1	8;7	n	0.00	0	6.0	0	5;7	n	0.00	0	6.0	0	2;10	n	0.00305686347467664	5.22127498216848	up	ENSMUSG00000024613.17	Tcof1	chr18	protein_coding	treacle ribosome biogenesis factor 1
known_NIR_9200	chr18	61713558	61715107	+	61713558	61720497	A3SS	ENSMUST00000165721.8	known	0.00	0	64	0	64	n	0.00	0	55	0	55	n	0.00	0	84	0	84	n	0.00	0	61	0	61	n	0.02	1	40	1	40	n	0.04	4	104	4	104	y	0.04	2	49	2	49	y	0.04	3	69	3	69	y	0.00598625569770709	-7	down	ENSMUSG00000024576.15	Csnk1a1	chr18	protein_coding	casein kinase 1, alpha 1
known_NIR_9299	chr18	7920250	7921425	+	7920250	7921422	A3SS	ENSMUST00000171042.8	known	0.02	2	83	2	83	y	0.04	3	79	3	79	y	0.04	6	130	6	130	y	0.02	2	88	2	88	y	0.05	3	58	3	58	y	0.06	8	122	8	122	y	0.11	10	82	10	82	y	0.07	10	133	10	133	y	0.0401359275851754	-2.95932015124686	down	ENSMUSG00000024283.16	Wac	chr18	protein_coding	WW domain containing adaptor with coiled-coil
known_NIR_9307	chr18	80296608	80298587	+	80296608;80297690	80297556;80298587	ES	ENSMUST00000131780.8	known	0.21	2	7.5	2	12;3	y	0.33	9	18.0	9	36;0	n	0.19	2	8.5	2	17;0	n	0.21	3	11.0	3	21;1	n	0.12	2	15.0	2	28;2	y	0.11	2	16.5	2	31;2	y	0.05	1	19.0	1	36;2	n	0.19	2	8.5	2	15;2	y	0.0344479503381657	2.73335899750557	up	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9311	chr18	80299618	80299997	+	80298625	80299997	A5SS	ENSMUST00000131780.8	known	0.74	51	18	51	18	y	0.69	58	26	58	26	y	0.62	26	16	26	16	y	0.74	62	22	62	22	y	0.84	64	12	64	12	y	0.83	100	20	100	20	y	0.76	84	26	84	26	y	0.88	99	14	99	14	y	0.0141829723714225	-3.43876037058376	down	ENSMUSG00000034006.18	Slc66a2	chr18	protein_coding	solute carrier family 66 member 2
known_NIR_9318	chr18	80779364	80781868	-	80779364;80780059	80780027;80781868	ES	ENSMUST00000091790.5	known	0.80	53	13.5	53	16;11	y	0.90	64	7.5	64	11;4	y	0.92	51	4.5	51	6;3	y	0.88	49	6.5	49	6;7	y	0.78	38	10.5	38	12;9	y	0.81	54	13.0	54	11;15	y	0.81	52	12.5	52	14;11	y	0.70	53	22.5	53	21;24	y	0.0353450102145515	2.7050089040023	up	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9319	chr18	80779364	80781868	-	80780059	80781868	3pMXE	ENSMUST00000225218.2	known	0.83	53	11	53	11	y	0.94	64	4	64	4	y	0.94	51	3	51	3	y	0.88	49	7	49	7	y	0.81	38	9	38	9	y	0.78	54	15	54	15	y	0.83	52	11	52	11	y	0.69	53	24	53	24	y	0.0265353906177049	2.94306882952784	up	ENSMUSG00000024566.11	Atp9b	chr18	protein_coding	ATPase, class II, type 9B
known_NIR_9373	chr19	10509363;10509698	10509622;10510184	+	10509363	10510184	cassetteExon	ENSMUST00000235162.2	known	0.33	6.5	13	6;7	13	y	0.41	3.5	5	5;2	5	y	0.27	9.5	26	11;8	26	y	0.29	4.5	11	2;7	11	y	0.21	3.5	13	3;4	13	y	0.12	3.0	22	3;3	22	y	0.16	1.5	8	0;3	8	n	0.15	2.5	14	1;4	14	n	0.00624931875611995	4.56167920808251	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9374	chr19	10509363;10509698	10509622;10510184	+	10509363;10509560	10509495;10510184	MXE	ENSMUST00000236206.2	known	0.76	6.5	2.0	6;7	1;3	n	0.70	3.5	1.5	5;2	2;1	n	0.73	9.5	3.5	11;8	3;4	y	0.45	4.5	5.5	2;7	5;6	y	0.50	3.5	3.5	3;4	0;7	n	0.43	3.0	4.0	3;3	4;4	y	0.25	1.5	4.5	0;3	4;5	n	0.25	2.5	7.5	1;4	8;7	n	0.0196329244649089	3.16997322822659	up	ENSMUSG00000034820.5	Cpsf7	chr19	protein_coding	cleavage and polyadenylation specific factor 7
known_NIR_9469	chr19	28989453	28993801	+	28989453	28990188	3pMXE	ENSMUST00000225310.2	known	0.11	3	24	3	24	y	0.05	1	20	1	20	n	0.14	3	19	3	19	y	0.13	3	20	3	20	y	0.04	1	24	1	24	n	0.00	0	30	0	30	n	0.04	1	24	1	24	n	0.04	1	24	1	24	n	0.0225618127218094	3.44444444444444	up	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9470	chr19	28989453	28993801	+	28989453	28993406	A3SS	ENSMUST00000050148.5	known	0.07	3	40	3	40	y	0.03	1	37	1	37	n	0.05	3	58	3	58	y	0.07	3	42	3	42	y	0.03	1	39	1	39	n	0.00	0	56	0	56	n	0.02	1	50	1	50	n	0.02	1	51	1	51	n	0.0209810417618345	3.27326835353989	up	ENSMUSG00000024780.8	Cdc37l1	chr19	protein_coding	cell division cycle 37-like 1
known_NIR_9500	chr19	34277582	34284525	+	34268144	34284525	A5SS	ENSMUST00000025691.13	known	0.02	1	40	1	40	n	0.03	1	37	1	37	n	0.08	7	81	7	81	y	0.07	4	55	4	55	y	0.11	4	34	4	34	y	0.08	4	48	4	48	y	0.08	4	44	4	44	y	0.14	9	55	9	55	y	0.0433448167645503	-2.55288883019029	down	ENSMUSG00000024778.14	Fas	chr19	protein_coding	Fas (TNF receptor superfamily member 6)
known_NIR_9627	chr19	4108841	4109424	-	4108841	4109259	5pMXE	ENSMUST00000076451.7	known	0.13	7	46	7	46	y	0.20	10	39	10	39	y	0.17	20	96	20	96	y	0.23	11	37	11	37	y	0.12	2	15	2	15	y	0.10	8	70	8	70	y	0.06	2	33	2	33	y	0.10	4	36	4	36	y	0.0175672974202301	3.52953638862728	up	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
known_NIR_9628	chr19	4108841	4109424	-	4108841;4109294	4109259;4109424	ES	ENSMUST00000189808.7	known	0.15	7	41.0	7	46;36	y	0.22	10	34.5	10	39;30	y	0.19	20	83.5	20	96;71	y	0.26	11	31.5	11	37;26	y	0.12	2	14.0	2	15;13	y	0.12	8	59.5	8	70;49	y	0.07	2	28.0	2	33;23	y	0.11	4	31.0	4	36;26	y	0.0152034101033667	3.82546027838003	up	ENSMUSG00000058216.14	Gstp3	chr19	protein_coding	glutathione S-transferase pi 3
known_NIR_9660	chr19	41951473	41951840	-	41951517	41951840	A3SS	ENSMUST00000167927.8	known	0.00	0	28	0	28	n	0.00	0	22	0	22	n	0.00	0	31	0	31	n	0.03	1	38	1	38	n	0.03	1	29	1	29	n	0.03	1	28	1	28	n	0.07	2	26	2	26	y	0.07	4	51	4	51	y	0.0262276848894054	-3.08666041661089	down	ENSMUSG00000025159.9	Mms19	chr19	protein_coding	MMS19 cytosolic iron-sulfur assembly component
known_NIR_9663	chr19	4198728	4199341	+	4198735	4199341	A5SS	ENSMUST00000008893.9	known	0.27	24	65	24	65	y	0.29	17	42	17	42	y	0.21	19	71	19	71	y	0.21	21	78	21	78	y	0.27	22	60	22	60	y	0.34	44	84	44	84	y	0.33	28	57	28	57	y	0.35	39	71	39	71	y	0.0304153685631672	-2.83383850431243	down	ENSMUSG00000024835.16	Coro1b	chr19	protein_coding	coronin, actin binding protein 1B
known_NIR_9677	chr19	4242270	4242749	+	4242270	4242744	A3SS	ENSMUST00000046094.6	known	0.00	0	389	0	389	n	0.00	0	308	0	308	n	0.00	0	403	0	403	n	0.00	0	421	0	421	n	0.01	4	300	4	300	y	0.03	17	524	17	524	y	0.03	11	391	11	391	y	0.01	5	389	5	389	y	0.040519326353834	-3.46410161513775	down	ENSMUSG00000040385.8	Ppp1ca	chr19	protein_coding	protein phosphatase 1 catalytic subunit alpha
known_NIR_9706	chr19	44110399	44110599	-	44110399	44111583	A5SS	ENSMUST00000026218.7	known	0.16	3	16	3	16	y	0.00	0	20	0	20	n	0.03	1	30	1	30	n	0.18	6	27	6	27	y	0.31	9	20	9	20	y	0.19	8	34	8	34	y	0.31	5	11	5	11	y	0.25	8	24	8	24	y	0.0231482495010623	-3.21365038654509	down	ENSMUSG00000025200.8	Cwf19l1	chr19	protein_coding	CWF19-like 1, cell cycle control (S. pombe)
known_NIR_9726	chr19	44978118	44980577	+	44977796	44980577	A5SS	ENSMUST00000026225.15	known	0.01	2	195	2	195	y	0.00	0	134	0	134	n	0.00	0	72	0	72	n	0.01	2	287	2	287	y	0.01	2	211	2	211	y	0.01	4	299	4	299	y	0.02	4	205	4	205	y	0.02	7	280	7	280	y	0.0498252627805768	-2.44948974278318	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
known_NIR_9727	chr19	44978118	44980577	+	44979797	44980577	A5SS&ES	ENSMUST00000236662.2	known	0.02	2	87	2	87	y	0.00	0	59	0	59	n	0.00	0	21	0	21	n	0.03	2	78	2	78	y	0.03	2	70	2	70	y	0.04	4	101	4	101	y	0.06	4	61	4	61	y	0.06	7	111	7	111	y	0.0164113195774773	-3.29983164553722	down	ENSMUSG00000025207.17	Sema4g	chr19	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
known_NIR_9860	chr19	53920636;53922001	53921922;53931897	-	53920636	53931897	cassetteExon	ENSMUST00000135402.4	known	0.00	0.0	61	0;0	61	n	0.00	0.0	72	0;0	72	n	0.03	3.5	107	3;4	107	y	0.01	1.0	69	1;1	69	n	0.03	1.5	45	1;2	45	n	0.03	2.5	88	3;2	88	y	0.04	2.5	66	3;2	66	y	0.03	1.5	45	0;3	45	n	0.0435462967323529	-3	down	ENSMUSG00000084957.4	Bbip1	chr19	protein_coding	BBSome interacting protein 1
known_NIR_9909	chr19	56286483	56297269	+	56286483;56295315	56295205;56297269	ES	ENSMUST00000078284.13	known	0.10	25	218.5	25	199;238	y	0.10	24	207.0	24	194;220	y	0.09	21	223.5	21	202;245	y	0.11	40	334.0	40	297;371	y	0.14	36	215.5	36	197;234	y	0.12	44	314.5	44	318;311	y	0.15	35	201.0	35	186;216	y	0.12	50	374.5	50	337;412	y	0.0144681911003896	-3.80601028449928	down	ENSMUSG00000025075.15	Habp2	chr19	protein_coding	hyaluronic acid binding protein 2
known_NIR_10103	chr19	8817932	8818472	+	8817148	8818472	A5SS	ENSMUST00000237654.2	known	0.77	50	15	50	15	y	0.79	37	10	37	10	y	0.82	40	9	40	9	y	0.83	53	11	53	11	y	0.65	37	20	37	20	y	0.65	60	33	60	33	y	0.74	51	18	51	18	y	0.75	56	19	56	19	y	0.0230570080490628	3.41414523200145	up	ENSMUSG00000118124.2	Gm50139	chr19	protein_coding	predicted gene, 50139
known_NIR_10145	chr2	103885371	103886346	+	103885371	103890227	A3SS	ENSMUST00000028603.10	known	0.24	43	139	43	139	y	0.23	30	98	30	98	y	0.28	34	87	34	87	y	0.21	56	213	56	213	y	0.27	50	132	50	132	y	0.30	96	224	96	224	y	0.28	55	141	55	141	y	0.30	80	185	80	185	y	0.0397647993828423	-2.87526965214031	down	ENSMUSG00000027180.13	Fbxo3	chr2	protein_coding	F-box protein 3
known_NIR_10224	chr2	119491140	119493074	-	119491140	119493261	A5SS	ENSMUST00000110802.8	known	0.15	3	17	3	17	y	0.22	2	7	2	7	n	0.23	3	10	3	10	y	0.20	5	20	5	20	y	0.09	2	20	2	20	y	0.07	2	25	2	25	y	0.00	0	11	0	11	n	0.17	4	20	4	20	y	0.03501303401777	2.9945823883556	up	ENSMUSG00000027305.10	Ndufaf1	chr2	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 1
known_NIR_10236	chr2	120202113;120205040	120204969;120205900	-	120202113;120204460	120204392;120205900	MXE	ENSMUST00000090042.12	known	0.35	3.0	5.5	3;3	6;5	y	0.36	4.5	8.0	4;5	9;7	y	0.33	6.5	13.0	7;6	15;11	y	0.31	4.5	10.0	4;5	9;11	y	0.38	4.5	7.5	3;6	8;7	y	0.52	7.0	6.5	10;4	8;5	y	0.40	5.0	7.5	10;0	9;6	n	0.43	6.5	8.5	7;6	10;7	y	0.0479357314217437	-2.89187384976149	down	ENSMUSG00000033808.17	Tmem87a	chr2	protein_coding	transmembrane protein 87A
known_NIR_10252	chr2	120398242	120414750	+	120398287	120414750	A5SS	ENSMUST00000110711.9	known	0.03	2	64	2	64	y	0.02	1	52	1	52	n	0.07	6	83	6	83	y	0.04	4	89	4	89	y	0.12	5	35	5	35	y	0.07	4	56	4	56	y	0.12	6	42	6	42	y	0.11	9	73	9	73	y	0.00690397257737317	-4.04411160944866	down	ENSMUSG00000027287.15	Snap23	chr2	protein_coding	synaptosomal-associated protein 23
known_NIR_10338	chr2	125684679	125686730	-	125684631	125686730	A3SS	ENSMUST00000028635.6	known	0.00	0	75	0	75	n	0.03	1	34	1	34	n	0.00	0	117	0	117	n	0.02	2	95	2	95	y	0.05	3	61	3	61	y	0.03	3	102	3	102	y	0.04	2	52	2	52	y	0.04	3	76	3	76	y	0.0261377052147607	-3.22047024073016	down	ENSMUSG00000027206.14	Cops2	chr2	protein_coding	COP9 signalosome subunit 2
known_NIR_10346	chr2	126500497	126517276	-	126500497	126504911	A5SS&ES	ENSMUST00000039978.13	known	0.50	5	5	5	5	y	0.62	5	3	5	3	n	0.54	7	6	7	6	y	0.58	7	5	7	5	y	0.92	11	1	11	1	n	0.78	14	4	14	4	y	0.75	6	2	6	2	n	0.81	13	3	13	3	y	0.00193869150655168	-5.64349001875938	down	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
known_NIR_10347	chr2	126500497;126505008	126504911;126517276	-	126500497	126517276	cassetteExon	ENSMUST00000110425.9	known	0.33	2.5	5	5;0	5	n	0.29	2.0	5	3;1	5	n	0.30	3.0	7	6;0	7	n	0.26	2.5	7	5;0	7	n	0.04	0.5	11	1;0	11	n	0.20	3.5	14	4;3	14	y	0.14	1.0	6	2;0	6	n	0.16	2.5	13	3;2	13	y	0.0120674572503845	4.32801424640367	up	ENSMUSG00000027361.16	Gabpb1	chr2	protein_coding	GA repeat binding protein, beta 1
known_NIR_10354	chr2	127282522	127286337	-	127282522;127284044	127283794;127286337	ES	ENSMUST00000028848.4	known	0.00	0	67.5	0	80;55	n	0.00	0	46.0	0	59;33	n	0.04	1	25.0	1	23;27	n	0.00	0	40.5	0	40;41	n	0.06	3	43.5	3	44;43	y	0.03	2	75.0	2	96;54	y	0.04	3	68.0	3	70;66	y	0.05	3	63.5	3	62;65	y	0.0312486966326853	-2.94058817645882	down	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10355	chr2	127282522	127286337	-	127284044	127286337	A3SS&ES	ENSMUST00000137502.2	known	0.00	0	55	0	55	n	0.00	0	33	0	33	n	0.04	1	27	1	27	n	0.00	0	41	0	41	n	0.07	3	43	3	43	y	0.04	2	54	2	54	y	0.04	3	66	3	66	y	0.04	3	65	3	65	y	0.0263443679144878	-3	down	ENSMUSG00000027371.11	Fahd2a	chr2	protein_coding	fumarylacetoacetate hydrolase domain containing 2A
known_NIR_10375	chr2	12983224	12985104	+	12983428	12985104	A5SS	ENSMUST00000154269.7	known	0.08	16	197	16	197	y	0.07	13	180	13	180	y	0.09	12	128	12	128	y	0.09	21	216	21	216	y	0.04	7	187	7	187	y	0.05	13	253	13	253	y	0.08	16	176	16	176	y	0.05	17	305	17	305	y	0.0419030225531744	2.77910133951951	up	ENSMUSG00000026730.13	Pter	chr2	protein_coding	phosphotriesterase related
known_NIR_10447	chr2	132691923	132703129	+	132691923;132696942	132696813;132703129	ES	ENSMUST00000028835.13	known	0.01	1	171.0	1	168;174	n	0.00	0	175.5	0	162;189	n	0.00	0	176.5	0	178;175	n	0.00	0	177.5	0	190;165	n	0.01	2	149.0	2	148;150	y	0.02	6	248.0	6	228;268	y	0.02	3	175.5	3	176;175	y	0.02	4	203.0	4	195;211	y	0.00542395034130874	-4.24264068711929	down	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10448	chr2	132691923;132703214	132703129;132704255	+	132691923	132704255	cassetteExon	ENSMUST00000110122.10	known	0.96	114.5	5	1;228	5	n	0.94	101.5	7	0;203	7	n	0.98	120.0	3	0;240	3	n	0.98	93.0	2	0;186	2	n	1.00	89.0	0	2;176	0	n	0.98	157.5	4	6;309	4	y	1.00	109.5	0	3;216	0	n	1.00	124.5	0	4;245	0	n	0.0435576347221575	-2.77746029931765	down	ENSMUSG00000027357.17	Crls1	chr2	protein_coding	cardiolipin synthase 1
known_NIR_10477	chr2	145664285	145686631	+	145664285	145664530	3pMXE	ENSMUST00000150449.2	known	0.33	2	4	2	4	n	0.25	1	3	1	3	n	0.44	4	5	4	5	n	0.62	8	5	8	5	y	0.80	4	1	4	1	n	0.64	16	9	16	9	y	0.50	4	4	4	4	n	0.75	6	2	6	2	n	0.046524981533916	-2.52129123175065	down	ENSMUSG00000001768.17	Rin2	chr2	protein_coding	Ras and Rab interactor 2
known_NIR_10519	chr2	152672022	152672306	-	152672022	152673523	A5SS	ENSMUST00000007803.12	known	0.95	18	1	18	1	n	0.81	25	6	25	6	y	0.90	38	4	38	4	y	0.75	27	9	27	9	y	0.70	14	6	14	6	y	0.60	30	20	30	20	y	0.56	20	16	20	16	y	0.71	24	10	24	10	y	0.0118834431526149	3.61255517197042	up	ENSMUSG00000007659.19	Bcl2l1	chr2	protein_coding	BCL2-like 1
known_NIR_10567	chr2	155423953	155434614	-	155423953	155429362	5pMXE	ENSMUST00000157008.8	known	0.03	4	121	4	121	y	0.04	4	107	4	107	y	0.05	10	209	10	209	y	0.03	5	158	5	158	y	0.03	3	100	3	100	y	0.01	3	202	3	202	y	0.01	2	151	2	151	y	0.02	5	227	5	227	y	0.0254739283431626	2.95419578350398	up	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10568	chr2	155423953	155434614	-	155423953;155429496	155429362;155434614	ES	ENSMUST00000079691.13	known	0.05	4	84.5	4	121;48	y	0.05	4	83.0	4	107;59	y	0.06	10	162.5	10	209;116	y	0.04	5	116.0	5	158;74	y	0.04	3	72.0	3	100;44	y	0.02	3	142.5	3	202;83	y	0.02	2	109.0	2	151;67	y	0.03	5	160.0	5	227;93	y	0.0121941868183737	3.57623736407562	up	ENSMUSG00000027610.18	Gss	chr2	protein_coding	glutathione synthetase
known_NIR_10684	chr2	164305288	164309068	+	164305288	164306278	3pMXE	ENSMUST00000109352.8	known	0.02	4	201	4	201	y	0.01	2	225	2	225	y	0.02	6	366	6	366	y	0.01	1	196	1	196	n	0.01	2	157	2	157	y	0.01	3	281	3	281	y	0.00	1	215	1	215	n	0.00	1	217	1	217	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000045503.17	Sys1	chr2	protein_coding	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
known_NIR_10821	chr2	176400217	176403674	+	176400189	176403674	A5SS	ENSMUST00000141122.2	known	0.82	9	2	9	2	y	1.00	9	0	9	0	n	0.82	9	2	9	2	y	0.80	16	4	16	4	y	0.71	12	5	12	5	y	0.67	8	4	8	4	y	0.50	4	4	4	4	n	0.75	9	3	9	3	y	0.031908706684337	2.80200224724002	up	ENSMUSG00000078879.11	Zfp973	chr2	protein_coding	zinc finger protein 973
known_NIR_10974	chr2	24949085	24950151	+	24949085;24949706	24949617;24950151	ES	ENSMUST00000100334.11	known	0.02	4	157.5	4	146;169	y	0.01	2	153.0	2	140;166	y	0.02	3	177.5	3	156;199	y	0.02	5	204.0	5	194;214	y	0.03	4	146.0	4	139;153	y	0.03	6	233.5	6	226;241	y	0.03	6	176.5	6	167;186	y	0.03	5	173.0	5	149;197	y	0.0153924380733023	-5	down	ENSMUSG00000006476.20	Nsmf	chr2	protein_coding	NMDA receptor synaptonuclear signaling and neuronal migration factor
known_NIR_11087	chr2	26845581	26848491	-	26845581	26846301	5pMXE	ENSMUST00000123126.2	known	0.08	6	72	6	72	y	0.06	3	44	3	44	y	0.05	3	52	3	52	y	0.02	1	41	1	41	n	0.02	1	40	1	40	n	0.03	2	75	2	75	y	0.00	0	56	0	56	n	0.00	0	61	0	61	n	0.0413737459272578	2.74397736228014	up	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
known_NIR_11088	chr2	26845581	26848491	-	26845581;26846375	26846301;26848491	ES	ENSMUST00000064244.11	known	0.08	6	67.5	6	72;63	y	0.07	3	43.0	3	44;42	y	0.05	3	52.0	3	52;52	y	0.03	1	37.0	1	41;33	n	0.03	1	34.0	1	40;28	n	0.03	2	67.0	2	75;59	y	0.00	0	51.5	0	56;47	n	0.00	0	55.0	0	61;49	n	0.0250849044205728	3.02097927657137	up	ENSMUSG00000052406.15	Rexo4	chr2	protein_coding	REX4, 3'-5' exonuclease
known_NIR_11111	chr2	28359340	28359435	+	28358962	28359435	A5SS	ENSMUST00000038600.4	known	0.01	1	82	1	82	n	0.00	0	59	0	59	n	0.00	0	79	0	79	n	0.02	2	83	2	83	y	0.03	2	65	2	65	y	0.02	2	93	2	93	y	0.03	2	73	2	73	y	0.04	3	66	3	66	y	0.0121941868183737	-3.57623736407562	down	ENSMUSG00000035772.12	Mrps2	chr2	protein_coding	mitochondrial ribosomal protein S2
known_NIR_11115	chr2	28568217	28568979	+	28568217	28568964	A3SS	ENSMUST00000028155.12	known	0.00	0	8	0	8	n	0.17	1	5	1	5	n	0.00	0	18	0	18	n	0.11	1	8	1	8	n	0.50	4	4	4	4	n	0.30	3	7	3	7	y	0.36	5	9	5	9	y	0.18	4	18	4	18	y	0.0195537542373961	-3.36324387994287	down	ENSMUSG00000026812.17	Tsc1	chr2	protein_coding	TSC complex subunit 1
known_NIR_11139	chr2	29952787	29958281	+	29952292	29958281	A5SS	ENSMUST00000134364.8	known	0.05	2	41	2	41	y	0.00	0	30	0	30	n	0.05	2	41	2	41	y	0.03	1	34	1	34	n	0.13	6	40	6	40	y	0.08	3	33	3	33	y	0.05	2	37	2	37	y	0.08	3	35	3	35	y	0.0459173307484601	-2.57841835357068	down	ENSMUSG00000054766.14	Set	chr2	protein_coding	SET nuclear oncogene
known_NIR_11161	chr2	30235951	30236365	-	30235951	30236071	5pMXE	ENSMUST00000142689.2	known	0.95	42	2	42	2	y	0.94	47	3	47	3	y	0.94	46	3	46	3	y	0.95	55	3	55	3	y	0.89	41	5	41	5	y	0.83	76	16	76	16	y	0.86	63	10	63	10	y	0.83	58	12	58	12	y	0.00634165904686252	6.31456937627316	up	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11162	chr2	30235951	30236365	-	30235951;30236085	30236071;30236365	ES	ENSMUST00000100215.11	known	0.94	42	2.5	42	2;3	y	0.93	47	3.5	47	3;4	y	0.93	46	3.5	46	3;4	y	0.96	55	2.5	55	3;2	y	0.90	41	4.5	41	5;4	y	0.86	76	12.0	76	16;8	y	0.87	63	9.5	63	10;9	y	0.83	58	11.5	58	12;11	y	0.00773296978767649	4.66628262628691	up	ENSMUSG00000026860.17	Sh3glb2	chr2	protein_coding	SH3-domain GRB2-like endophilin B2
known_NIR_11197	chr2	31473272	31482478	+	31473272	31482475	A3SS	ENSMUST00000113482.8	known	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.00	0	28	0	28	n	0.05	1	18	1	18	n	0.10	2	18	2	18	y	0.09	3	31	3	31	y	0.13	2	13	2	13	y	0.05	2	41	2	41	y	0.00957775937166043	-3.86168633620382	down	ENSMUSG00000026843.16	Fubp3	chr2	protein_coding	far upstream element (FUSE) binding protein 3
known_NIR_11218	chr2	32177657	32178043	-	32177657	32177898	5pMXE	ENSMUST00000140406.8	known	0.02	13	547	13	547	y	0.02	11	618	11	618	y	0.01	9	691	9	691	y	0.01	7	518	7	518	y	0.03	13	443	13	443	y	0.03	21	795	21	795	y	0.03	23	637	23	637	y	0.03	19	603	19	603	y	0.013846832988859	-5.19615242270663	down	ENSMUSG00000044627.12	Swi5	chr2	protein_coding	SWI5 recombination repair homolog (yeast)
known_NIR_11313	chr2	34985935	34990577	-	34985935	34987900	A5SS&ES	ENSMUST00000154817.2	known	0.01	13	1325	13	1325	y	0.01	11	968	11	968	y	0.01	3	501	3	501	y	0.02	35	1589	35	1589	y	0.02	24	1210	24	1210	y	0.03	49	1707	49	1707	y	0.02	20	1206	20	1206	y	0.03	46	1727	46	1727	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11315	chr2	34985935;34988092	34987900;34990577	-	34985935	34990577	cassetteExon	ENSMUST00000134940.9	known	0.99	863.5	13	1325;402	13	y	0.98	604.5	11	968;241	11	y	0.99	322.0	3	501;143	3	y	0.97	1066.5	35	1589;544	35	y	0.97	791.0	24	1210;372	24	y	0.96	1108.0	49	1707;509	49	y	0.97	758.5	20	1206;311	20	y	0.96	1143.0	46	1727;559	46	y	0.0264653665333925	3.1304951684997	up	ENSMUSG00000035875.16	AI182371	chr2	protein_coding	expressed sequence AI182371
known_NIR_11341	chr2	37474118	37476522	-	37470818	37476522	A3SS	ENSMUST00000183690.8	known	0.98	54	1	54	1	n	0.95	40	2	40	2	y	1.00	80	0	80	0	n	0.98	46	1	46	1	n	0.96	47	2	47	2	y	0.90	72	8	72	8	y	0.94	63	4	63	4	y	0.90	46	5	46	5	y	0.0320317767551924	2.88457184292247	up	ENSMUSG00000026915.17	Strbp	chr2	protein_coding	spermatid perinuclear RNA binding protein
known_NIR_11360	chr2	38954735	38955437	-	38954735	38955393	A5SS	ENSMUST00000039165.15	known	0.29	2	5	2	5	n	0.00	0	8	0	8	n	0.28	5	13	5	13	y	0.17	2	10	2	10	y	0.50	5	5	5	5	y	0.38	6	10	6	10	y	0.71	5	2	5	2	n	0.55	6	5	6	5	y	0.0107653225509749	-3.64570147440878	down	ENSMUSG00000026754.17	Golga1	chr2	protein_coding	golgi autoantigen, golgin subfamily a, 1
known_NIR_11412	chr2	52047936	52049489	-	52041468	52049489	A3SS	ENSMUST00000135200.2	known	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.75	3	1	3	1	n	0.0198039411803931	-7	down	ENSMUSG00000026950.19	Neb	chr2	protein_coding	nebulin
known_NIR_11436	chr2	58670160	58680041	+	58670160	58681790	A3SS	ENSMUST00000071543.12	known	0.99	832	6	832	6	y	1.00	546	0	546	0	n	1.00	6	0	6	0	n	0.99	843	11	843	11	y	0.98	1040	22	1040	22	y	0.99	1190	13	1190	13	y	0.99	974	9	974	9	y	0.98	1764	28	1764	28	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000026839.18	Upp2	chr2	protein_coding	uridine phosphorylase 2
known_NIR_11477	chr2	6118924	6134853	-	6134640	6134853	3pMXE	ENSMUST00000194054.2	known	0.69	18	8	18	8	y	0.72	13	5	13	5	y	0.86	32	5	32	5	y	0.70	23	10	23	10	y	1.00	27	0	27	0	n	0.83	24	5	24	5	y	0.89	24	3	24	3	y	0.86	25	4	25	4	y	0.0309561441565915	-2.80874454808474	down	ENSMUSG00000045319.14	Proser2	chr2	protein_coding	proline and serine rich 2
known_NIR_11506	chr2	69553707;69561924	69561835;69562090	+	69553707	69562090	cassetteExon	ENSMUST00000040915.15	known	0.33	2.5	5	2;3	5	y	0.57	4.0	3	7;1	3	n	0.35	7.0	13	5;9	13	y	0.37	3.5	6	1;6	6	n	0.29	2.0	5	0;4	5	n	0.18	3.0	14	3;3	14	y	0.20	3.5	14	5;2	14	y	0.19	2.5	11	2;3	11	y	0.0336598717615719	3.10960493586289	up	ENSMUSG00000042133.17	Ppig	chr2	protein_coding	peptidyl-prolyl isomerase G (cyclophilin G)
known_NIR_11513	chr2	69700924	69701025	+	69700924	69701022	A3SS	ENSMUST00000090852.11	known	0.05	12	232	12	232	y	0.08	14	170	14	170	y	0.06	16	245	16	245	y	0.04	8	171	8	171	y	0.08	14	172	14	172	y	0.07	17	234	17	234	y	0.11	21	178	21	178	y	0.10	23	197	23	197	y	0.0408278529113471	-2.6	down	ENSMUSG00000068882.14	Ssb	chr2	protein_coding	Sjogren syndrome antigen B
known_NIR_11517	chr2	69821981	69824020	+	69821969	69824020	A5SS	ENSMUST00000055758.16	known	0.65	46	25	46	25	y	0.64	30	17	30	17	y	0.51	44	42	44	42	y	0.66	71	36	71	36	y	0.49	37	39	37	39	y	0.47	57	64	57	64	y	0.54	43	37	43	37	y	0.49	43	44	43	44	y	0.0367507268391061	3.07030007198086	up	ENSMUSG00000044308.18	Ubr3	chr2	protein_coding	ubiquitin protein ligase E3 component n-recognin 3
known_NIR_11537	chr2	71283742;71331213	71331123;71337129	+	71283742	71337129	cassetteExon	ENSMUST00000037210.9	known	0.18	14.0	65	9;19	65	y	0.19	8.5	36	7;10	36	y	0.28	19.0	49	7;31	49	y	0.24	19.0	59	13;25	59	y	0.18	13.5	60	12;15	60	y	0.15	13.5	74	12;15	74	y	0.12	8.0	58	4;12	58	y	0.16	10.5	54	5;16	54	y	0.0491528372223229	2.65366089914757	up	ENSMUSG00000041921.17	Metap1d	chr2	protein_coding	methionyl aminopeptidase type 1D (mitochondrial)
known_NIR_11548	chr2	72817976	72818712	+	72817976	72818716	A3SS	ENSMUST00000123087.8	known	0.00	0	2	0	2	n	0.00	0	8	0	8	n	0.00	0	7	0	7	n	0.00	0	7	0	7	n	0.25	2	6	2	6	n	0.17	2	10	2	10	y	0.30	3	7	3	7	y	0.10	1	9	1	9	n	0.0187314132672581	-4.65228726800424	down	ENSMUSG00000063714.16	Sp3os	chr2	lncRNA	trans-acting transcription factor 3, opposite strand
known_NIR_11702	chr2	91509774	91510688	-	91509774;91510342	91510265;91510688	ES	ENSMUST00000076803.12	known	0.04	3	66.5	3	63;70	y	0.03	2	78.0	2	77;79	y	0.04	6	147.0	6	135;159	y	0.05	4	82.0	4	85;79	y	0.01	1	66.5	1	65;68	n	0.03	3	87.0	3	90;84	y	0.00	0	76.0	0	68;84	n	0.03	3	93.0	3	94;92	y	0.0498781845442338	2.63493019696104	up	ENSMUSG00000027244.15	Atg13	chr2	protein_coding	autophagy related 13
known_NIR_11729	chr2	92209060	92209141	+	92209018	92209141	A5SS	ENSMUST00000155891.8	known	0.01	4	284	4	284	y	0.02	5	229	5	229	y	0.01	3	202	3	202	y	0.01	2	287	2	287	y	0.02	4	239	4	239	y	0.02	10	403	10	403	y	0.03	9	321	9	321	y	0.02	8	327	8	327	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000027222.15	Pex16	chr2	protein_coding	peroxisomal biogenesis factor 16
known_NIR_11767	chr3	102970769	102971550	+	102970769;102971473	102971432;102971550	ES	ENSMUST00000029445.13	known	0.09	4	40.0	4	37;43	y	0.06	2	32.0	2	31;33	y	0.03	2	76.5	2	77;76	y	0.04	2	48.5	2	46;51	y	0.02	1	40.0	1	39;41	n	0.00	0	53.0	0	50;56	n	0.00	0	52.5	0	54;51	n	0.00	0	63.5	0	71;56	n	0.0257884404742018	3.53553390593274	up	ENSMUSG00000027852.15	Nras	chr3	protein_coding	neuroblastoma ras oncogene
known_NIR_11802	chr3	106413168;106427395	106427325;106440671	-	106413168;106438594	106420119;106440671	MXE	ENSMUST00000068301.11	known	0.35	42.5	77.5	85;0	13;142	n	0.35	30.5	57.5	61;0	10;105	n	0.38	43.5	70.5	85;2	18;123	y	0.40	50.0	74.0	100;0	2;146	n	0.40	38.5	58.0	76;1	6;110	n	0.43	67.0	90.0	134;0	5;175	n	0.39	46.0	72.5	92;0	6;139	n	0.43	76.5	101.0	153;0	11;191	n	0.0388344486409511	-2.6549539521063	down	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11805	chr3	106440818	106446759	-	106440818	106446506	A5SS	ENSMUST00000068301.11	known	0.09	11	112	11	112	y	0.12	10	70	10	70	y	0.07	8	112	8	112	y	0.09	12	125	12	125	y	0.00	0	88	0	88	n	0.06	9	150	9	150	y	0.00	0	116	0	116	n	0.07	11	154	11	154	y	0.0417228089029287	2.78994332985166	up	ENSMUSG00000040774.16	Cept1	chr3	protein_coding	choline/ethanolaminephosphotransferase 1
known_NIR_11810	chr3	106455236;106457991	106457815;106459472	+	106455236	106459472	cassetteExon	ENSMUST00000067630.13	known	0.02	1.5	86	3;0	86	n	0.03	2.0	74	3;1	74	n	0.05	5.0	98	6;4	98	y	0.03	3.5	104	0;7	104	n	0.01	0.5	85	1;0	85	n	0.01	1.5	117	0;3	117	n	0.01	0.5	95	0;1	95	n	0.02	1.5	89	0;3	89	n	0.0428004269752684	2.95419578350399	up	ENSMUSG00000027900.16	Dram2	chr3	protein_coding	DNA-damage regulated autophagy modulator 2
known_NIR_11818	chr3	107577636	107579358	-	107578560	107579358	3pMXE	ENSMUST00000153623.2	known	0.08	11	119	11	119	y	0.08	5	58	5	58	y	0.05	8	161	8	161	y	0.05	8	141	8	141	y	0.04	4	100	4	100	y	0.05	8	142	8	142	y	0.02	2	82	2	82	y	0.02	4	165	4	165	y	0.0303554680818533	2.8368325730679	up	ENSMUSG00000027893.15	Ahcyl1	chr3	protein_coding	S-adenosylhomocysteine hydrolase-like 1
known_NIR_11819	chr3	107577636;107578560	107578454;107579358	-	107577636	107579358	cassetteExon	ENSMUST00000138091.8	known	0.90	96.5	11	74;119	11	y	0.93	63.0	5	68;58	5	y	0.94	129.0	8	97;161	8	y	0.94	127.5	8	114;141	8	y	0.96	85.0	4	70;100	4	y	0.94	123.5	8	105;142	8	y	0.97	67.5	2	53;82	2	y	0.97	128.5	4	92;165	4	y	0.036034606460202	-2.75084790184853	down	ENSMUSG00000027893.15	Ahcyl1	chr3	protein_coding	S-adenosylhomocysteine hydrolase-like 1
known_NIR_11835	chr3	107988447	107993534	-	107988447	107992563	5pMXE	ENSMUST00000136712.8	known	0.84	16	3	16	3	y	0.75	12	4	12	4	y	0.75	30	10	30	10	y	0.69	22	10	22	10	y	0.67	14	7	14	7	y	0.63	12	7	12	7	y	0.62	10	6	10	6	y	0.65	17	9	17	9	y	0.027524515869215	3.5006893970797	up	ENSMUSG00000027889.18	Ampd2	chr3	protein_coding	adenosine monophosphate deaminase 2
known_NIR_11837	chr3	108107478	108108076	-	108107478	108107943	A5SS	ENSMUST00000106655.2	known	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.44	4	5	4	5	n	0.83	5	1	5	1	n	0.33	1	2	1	2	n	0.60	3	2	3	2	n	0.67	2	1	2	1	n	0.0168426930341452	-3.28235096798455	down	ENSMUSG00000048796.8	Cyb561d1	chr3	protein_coding	cytochrome b-561 domain containing 1
known_NIR_11841	chr3	108479064	108480196	+	108479068	108480196	A5SS	ENSMUST00000131814.8	known	1.00	47	0	47	0	n	1.00	23	0	23	0	n	1.00	19	0	19	0	n	1.00	29	0	29	0	n	0.96	26	1	26	1	n	0.94	31	2	31	2	y	0.92	34	3	34	3	y	0.97	31	1	31	1	n	0.0178540164548452	4.73536997641783	up	ENSMUSG00000048100.14	Taf13	chr3	protein_coding	TATA-box binding protein associated factor 13
known_NIR_11843	chr3	108479429	108480196	+	108479068	108480196	A5SS	ENSMUST00000131814.8	known	1.00	1	0	1	0	n	1.00	4	0	4	0	n	1.00	4	0	4	0	n	1.00	1	0	1	0	n	0.75	3	1	3	1	n	0.80	8	2	8	2	y	0.40	2	3	2	3	n	0.67	2	1	2	1	n	0.0304995158840379	3.87135740854289	up	ENSMUSG00000048100.14	Taf13	chr3	protein_coding	TATA-box binding protein associated factor 13
known_NIR_11871	chr3	116298095	116300484	-	116298117	116300484	A3SS	ENSMUST00000000348.15	known	0.10	3	27	3	27	y	0.04	1	23	1	23	n	0.06	3	47	3	47	y	0.14	4	24	4	24	y	0.23	5	17	5	17	y	0.24	8	26	8	26	y	0.14	4	24	4	24	y	0.15	4	23	4	23	y	0.0228889170754655	-3.06316482145579	down	ENSMUSG00000000339.15	Rtca	chr3	protein_coding	RNA 3'-terminal phosphate cyclase
known_NIR_11915	chr3	122305914	122306000	+	122304971	122306000	A5SS	ENSMUST00000029766.9	known	0.15	5	29	5	29	y	0.11	4	33	4	33	y	0.16	6	31	6	31	y	0.08	6	70	6	70	y	0.00	0	55	0	55	n	0.05	4	70	4	70	y	0.03	2	57	2	57	y	0.09	7	71	7	71	y	0.0205219898268085	3.12285747448873	up	ENSMUSG00000028121.9	Bcar3	chr3	protein_coding	breast cancer anti-estrogen resistance 3
known_NIR_11948	chr3	135144323	135145405	+	135144193	135145405	A5SS	ENSMUST00000199613.5	known	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.25	3	9	3	9	y	0.46	6	7	6	7	y	0.38	3	5	3	5	n	0.50	3	3	3	3	n	0.14	1	6	1	6	n	0.0497314835603461	-2.4751702481767	down	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11959	chr3	135144631	135145405	+	135144323	135145405	A5SS	ENSMUST00000196591.5	known	1.00	3	0	3	0	n	1.00	1	0	1	0	n	0.78	7	2	7	2	n	0.70	7	3	7	3	y	0.45	5	6	5	6	y	0.50	3	3	3	3	n	0.62	5	3	5	3	n	0.67	2	1	2	1	n	0.0188241309440009	3.35913044381308	up	ENSMUSG00000078578.10	Ube2d3	chr3	protein_coding	ubiquitin-conjugating enzyme E2D 3
known_NIR_11977	chr3	137923661	137943362	-	137917013	137943362	A3SS	ENSMUST00000185122.8	known	0.16	4	21	4	21	y	0.33	13	26	13	26	y	0.00	0	7	0	7	n	0.22	11	39	11	39	y	0.45	15	18	15	18	y	0.29	22	55	22	55	y	0.45	18	22	18	22	y	0.39	14	22	14	22	y	0.0425526001188048	-2.77017622355764	down	ENSMUSG00000099146.8	0610031O16Rik	chr3	lncRNA	RIKEN cDNA 0610031O16 gene
known_NIR_12003	chr3	142017975	142020167	-	142018302	142020167	A3SS	ENSMUST00000029941.16	known	0.20	5	20	5	20	y	0.18	2	9	2	9	y	0.16	4	21	4	21	y	0.10	3	27	3	27	y	0.08	2	22	2	22	y	0.02	1	50	1	50	n	0.03	1	34	1	34	n	0.00	0	51	0	51	n	0.00407638904977799	4.63636363636364	up	ENSMUSG00000028273.16	Pdlim5	chr3	protein_coding	PDZ and LIM domain 5
known_NIR_12097	chr3	154797195	154798572	-	154797195	154798936	A5SS	ENSMUST00000066568.6	known	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.11	1	8	1	8	n	0.09	2	21	2	21	y	0.41	7	10	7	10	y	0.33	5	10	5	10	y	0.61	11	7	11	7	y	0.25	7	21	7	21	y	0.0144906707966776	-4.23918154207853	down	ENSMUSG00000053870.8	Fpgt	chr3	protein_coding	fucose-1-phosphate guanylyltransferase
known_NIR_12112	chr3	157728587;157729868	157729760;157732362	-	157728587	157732362	cassetteExon	ENSMUST00000121326.8	known	0.10	2.5	22	1;4	22	n	0.03	0.5	18	0;1	18	n	0.07	2.5	31	1;4	31	n	0.04	1.5	32	0;3	32	n	0.13	2.0	13	0;4	13	n	0.09	4.0	43	0;8	43	n	0.13	3.5	23	0;7	23	n	0.13	5.5	36	0;11	36	n	0.0233483930529083	-3.20713490294909	down	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12113	chr3	157728996	157732362	-	157728996;157729868	157729760;157732362	ES	ENSMUST00000126716.9	known	0.27	2	5.5	2	7;4	y	0.00	0	0.5	0	0;1	n	0.31	2	4.5	2	5;4	y	0.25	1	3.0	1	3;3	n	0.46	3	3.5	3	3;4	y	0.46	6	7.0	6	6;8	y	0.60	6	4.0	6	1;7	n	0.42	4	5.5	4	0;11	n	0.0201454920671461	-3.44251561425776	down	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
known_NIR_12196	chr3	37459640	37463657	-	37459643	37463657	A3SS	ENSMUST00000108118.9	known	0.14	6	38	6	38	y	0.21	6	22	6	22	y	0.12	5	37	5	37	y	0.14	4	24	4	24	y	0.23	5	17	5	17	y	0.27	15	40	15	40	y	0.38	19	31	19	31	y	0.23	10	34	10	34	y	0.0297903940856764	-3.08118011256661	down	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
known_NIR_12197	chr3	37466564;37469841	37469800;37470850	-	37466564	37470850	cassetteExon	ENSMUST00000052645.13	known	0.11	2.5	20	3;2	20	y	0.24	6.0	19	5;7	19	y	0.22	7.5	27	9;6	27	y	0.33	7.0	14	8;6	14	y	0.50	10.0	10	7;13	10	y	0.27	15.0	41	18;12	41	y	0.42	11.5	16	10;13	16	y	0.40	11.5	17	10;13	17	y	0.0393669226784879	-2.62615084795125	down	ENSMUSG00000050174.16	Nudt6	chr3	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 6
known_NIR_12356	chr3	87950486;87950908	87950774;87958469	+	87950486	87958469	cassetteExon	ENSMUST00000029707.13	known	0.07	1.0	14	1;1	14	n	0.12	2.0	15	1;3	15	n	0.05	2.0	39	2;2	39	y	0.07	1.0	13	1;1	13	n	0.02	0.5	21	1;0	21	n	0.00	0.0	12	0;0	12	n	0.02	0.5	20	0;1	20	n	0.04	1.0	23	1;1	23	n	0.0220584809396007	3.3789445374333	up	ENSMUSG00000028069.17	Gpatch4	chr3	protein_coding	G patch domain containing 4
known_NIR_12372	chr3	88301877;88303117	88303021;88303212	-	88301877	88303212	cassetteExon	ENSMUST00000193338.6	known	0.13	5.0	34	7;3	34	y	0.13	4.5	31	4;5	31	y	0.12	2.0	14	2;2	14	y	0.16	5.5	29	6;5	29	y	0.20	6.0	24	4;8	24	y	0.15	9.5	54	10;9	54	y	0.16	7.5	40	9;6	40	y	0.21	6.5	25	9;4	25	y	0.0476248272607546	-2.63493019696104	down	ENSMUSG00000028066.16	Pmf1	chr3	protein_coding	polyamine-modulated factor 1
known_NIR_12384	chr3	88358804	88358995	-	88358774	88358995	A3SS	ENSMUST00000184487.8	known	0.44	4	5	4	5	n	0.12	1	7	1	7	n	0.20	1	4	1	4	n	0.28	5	13	5	13	y	0.50	3	3	3	3	n	0.39	7	11	7	11	y	0.50	2	2	2	2	n	0.50	8	8	8	8	y	0.045472732504999	-2.88564212348799	down	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12387	chr3	88362153	88363441	-	88362153	88362855	5pMXE	ENSMUST00000029700.12	known	0.15	17	97	17	97	y	0.15	15	87	15	87	y	0.14	15	94	15	94	y	0.12	17	123	17	123	y	0.21	22	82	22	82	y	0.16	26	140	26	140	y	0.22	15	53	15	53	y	0.21	33	125	33	125	y	0.0135035931131035	-3.92792202424786	down	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12388	chr3	88362153	88363441	-	88362153;88362991	88362855;88363441	ES	ENSMUST00000141471.2	known	0.25	17	51.5	17	97;6	y	0.25	15	46.0	15	87;5	y	0.23	15	51.5	15	94;9	y	0.20	17	67.5	17	123;12	y	0.31	22	49.5	22	82;17	y	0.26	26	75.0	26	140;10	y	0.34	15	28.5	15	53;4	y	0.32	33	69.0	33	125;13	y	0.0135444367707095	-3.62033094019108	down	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12390	chr3	88362153;88363099	88362855;88363441	-	88362153	88363441	cassetteExon	ENSMUST00000123753.8	known	0.75	50.0	17	97;3	17	y	0.75	44.0	15	87;1	15	n	0.76	48.0	15	94;2	15	y	0.78	62.0	17	123;1	17	n	0.65	41.0	22	82;0	22	n	0.73	71.5	26	140;3	26	y	0.65	28.0	15	53;3	15	y	0.66	63.5	33	125;2	33	y	0.0146998730236698	4.25481471698382	up	ENSMUSG00000028064.18	Sema4a	chr3	protein_coding	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
known_NIR_12454	chr3	89303389	89305266	+	89301700	89305266	A5SS	ENSMUST00000126926.2	known	0.42	15	21	15	21	y	0.31	8	18	8	18	y	0.44	7	9	7	9	y	0.55	23	19	23	19	y	0.61	28	18	28	18	y	0.68	27	13	27	13	y	0.60	26	17	26	17	y	0.62	21	13	21	13	y	0.0215756317370834	-3.77333046706596	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
known_NIR_12487	chr3	89909783	89910552	-	89909780	89910552	A3SS	ENSMUST00000198322.5	known	0.79	38	10	38	10	y	0.76	39	12	39	12	y	0.79	49	13	49	13	y	0.80	37	9	37	9	y	0.81	48	11	48	11	y	0.82	62	14	62	14	y	0.84	63	12	63	12	y	0.82	60	13	60	13	y	0.0148331193466641	-3.50324524872685	down	ENSMUSG00000042520.17	Ubap2l	chr3	protein_coding	ubiquitin-associated protein 2-like
known_NIR_12596	chr3	95247376	95247473	-	95247373	95247473	A3SS	ENSMUST00000124638.8	known	0.80	16	4	16	4	y	0.77	10	3	10	3	y	0.91	20	2	20	2	y	0.83	24	5	24	5	y	1.00	25	0	25	0	n	0.97	33	1	33	1	n	0.94	15	1	15	1	n	0.90	36	4	36	4	y	0.0172915689034089	-3.38642730739298	down	ENSMUSG00000015697.15	Setdb1	chr3	protein_coding	SET domain, bifurcated 1
known_NIR_12726	chr4	108022858	108027058	+	108026979	108027058	5pMXE	ENSMUST00000135718.8	known	0.02	9	472	9	472	y	0.03	14	451	14	451	y	0.02	9	398	9	398	y	0.03	13	485	13	485	y	0.02	11	449	11	449	y	0.01	7	714	7	714	y	0.01	5	547	5	547	y	0.02	9	561	9	561	y	0.0498252627805767	2.44948974278318	up	ENSMUSG00000028601.19	Echdc2	chr4	protein_coding	enoyl Coenzyme A hydratase domain containing 2
known_NIR_12738	chr4	108405367	108406423	+	108405367	108406438	A3SS	ENSMUST00000043368.12	known	0.25	4	12	4	12	y	0.17	1	5	1	5	n	0.14	4	25	4	25	y	0.17	4	19	4	19	y	0.33	9	18	9	18	y	0.48	10	11	10	11	y	0.39	7	11	7	11	y	0.26	10	28	10	28	y	0.0211598065865971	-3.49206357461506	down	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
known_NIR_12741	chr4	108687780	108688903	-	108687780	108689610	A5SS	ENSMUST00000102740.8	known	0.50	1	1	1	1	n	0.25	3	9	3	9	y	0.20	2	8	2	8	y	0.17	1	5	1	5	n	0.67	2	1	2	1	n	0.40	2	3	2	3	n	0.64	7	4	7	4	y	0.50	3	3	3	3	n	0.033034644088856	-2.78028658483602	down	ENSMUSG00000028568.17	Btf3l4	chr4	protein_coding	basic transcription factor 3-like 4
known_NIR_12786	chr4	115431961	115432104	+	115431961	115432087	A3SS	ENSMUST00000030486.15	known	0.82	9	2	9	2	y	0.84	16	3	16	3	y	0.75	9	3	9	3	y	0.80	20	5	20	5	y	0.75	6	2	6	2	n	0.78	21	6	21	6	y	0.68	13	6	13	6	y	0.71	5	2	5	2	n	0.0486192588602506	2.47763720737861	up	ENSMUSG00000028712.13	Cyp4a31	chr4	protein_coding	cytochrome P450, family 4, subfamily a, polypeptide 31
known_NIR_12789	chr4	115484137	115485866	-	115484137	115485533	A5SS&ES	ENSMUST00000135569.8	known	0.94	16	1	16	1	n	1.00	30	0	30	0	n	1.00	23	0	23	0	n	1.00	22	0	22	0	n	0.95	18	1	18	1	n	0.90	18	2	18	2	y	0.92	23	2	23	2	y	0.86	25	4	25	4	y	0.0195779106598456	3.21455025366432	up	ENSMUSG00000028713.18	Cyp4b1	chr4	protein_coding	cytochrome P450, family 4, subfamily b, polypeptide 1
known_NIR_12868	chr4	119028239	119030860	-	119028239	119031335	A5SS	ENSMUST00000106355.5	known	0.20	2	8	2	8	y	0.33	5	10	5	10	y	0.33	5	10	5	10	y	0.15	2	11	2	11	y	0.38	3	5	3	5	n	0.62	8	5	8	5	y	0.50	6	6	6	6	y	0.55	6	5	6	5	y	0.00904415596294345	-3.8077105348787	down	ENSMUSG00000045268.14	Zfp691	chr4	protein_coding	zinc finger protein 691
known_NIR_12973	chr4	128635877	128637147	+	128621663	128637147	A5SS	ENSMUST00000106079.10	known	0.18	2	9	2	9	y	0.36	5	9	5	9	y	0.21	7	26	7	26	y	0.08	1	11	1	11	n	0.00	0	14	0	14	n	0.00	0	17	0	17	n	0.00	0	21	0	21	n	0.09	1	10	1	10	n	0.0424042504497881	2.97671655082378	up	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_12974	chr4	128635877	128637147	+	128621992	128637147	A5SS	ENSMUST00000133439.8	known	0.33	2	4	2	4	n	0.62	5	3	5	3	n	0.39	7	11	7	11	y	0.25	1	3	1	3	n	0.00	0	1	0	1	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.17	1	5	1	5	n	0.0179353483742373	3.49063031035668	up	ENSMUSG00000028796.18	Phc2	chr4	protein_coding	polyhomeotic 2
known_NIR_13121	chr4	132997120;132998125	132997981;132998274	-	132997120	132998274	cassetteExon	ENSMUST00000105907.9	known	0.05	4.0	69	4;4	69	y	0.02	1.5	65	0;3	65	n	0.07	6.0	76	6;6	76	y	0.05	3.5	65	4;3	65	y	0.08	4.0	45	2;6	45	y	0.07	6.5	85	5;8	85	y	0.10	6.0	56	6;6	56	y	0.07	5.5	78	3;8	78	y	0.0455487344230518	-2.6	down	ENSMUSG00000028857.17	Tmem222	chr4	protein_coding	transmembrane protein 222
known_NIR_13159	chr4	134260063	134262216	-	134260063	134262561	A5SS	ENSMUST00000116279.10	known	0.10	5	44	5	44	y	0.08	4	48	4	48	y	0.12	8	58	8	58	y	0.12	7	53	7	53	y	0.09	5	52	5	52	y	0.08	5	57	5	57	y	0.04	2	49	2	49	y	0.06	4	64	4	64	y	0.0437193421017436	2.55996055794858	up	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
known_NIR_13204	chr4	137049930	137056024	-	137048503	137056024	A3SS	ENSMUST00000051477.13	known	0.01	4	402	4	402	y	0.01	5	380	5	380	y	0.03	16	553	16	553	y	0.01	3	414	3	414	y	0.03	10	285	10	285	y	0.03	16	489	16	489	y	0.04	18	386	18	386	y	0.03	13	475	13	475	y	0.0307597787889486	-3.13049516849971	down	ENSMUSG00000006699.18	Cdc42	chr4	protein_coding	cell division cycle 42
known_NIR_13233	chr4	137944051	137949400	+	137944051;137949034	137948837;137949400	ES	ENSMUST00000105827.8	known	0.11	5	38.5	5	24;53	y	0.18	7	31.0	7	21;41	y	0.14	9	54.0	9	27;81	y	0.19	15	65.0	15	44;86	y	0.28	16	40.5	16	25;56	y	0.27	22	60.0	22	54;66	y	0.19	10	41.5	10	33;50	y	0.24	20	62.5	20	34;91	y	0.0168820712138868	-3.286335345031	down	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13234	chr4	137944051	137949400	+	137949034	137949400	A5SS&ES	ENSMUST00000105826.8	known	0.09	5	53	5	53	y	0.15	7	41	7	41	y	0.10	9	81	9	81	y	0.15	15	86	15	86	y	0.22	16	56	16	56	y	0.25	22	66	22	66	y	0.17	10	50	10	50	y	0.18	20	91	20	91	y	0.0154388551876306	-3.37391097412544	down	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13235	chr4	137944051;137949029	137948837;137949400	+	137944051	137949400	cassetteExon	ENSMUST00000097836.10	known	0.71	12.5	5	24;1	5	n	0.67	14.0	7	21;7	7	y	0.64	16.0	9	27;5	9	y	0.63	25.5	15	44;7	15	y	0.48	14.5	16	25;4	16	y	0.56	28.5	22	54;3	22	y	0.64	17.5	10	33;2	10	y	0.48	18.5	20	34;3	20	y	0.0410798289511203	2.89574373540561	up	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13239	chr4	137944605	137949400	+	137944051	137949400	A5SS	ENSMUST00000097836.10	known	0.17	1	5	1	5	n	0.30	3	7	3	7	y	0.31	4	9	4	9	y	0.12	2	15	2	15	y	0.00	0	16	0	16	n	0.00	0	22	0	22	n	0.09	1	10	1	10	n	0.13	3	20	3	20	y	0.0293787295640865	2.95187530888349	up	ENSMUSG00000028759.14	Hp1bp3	chr4	protein_coding	heterochromatin protein 1, binding protein 3
known_NIR_13302	chr4	147945470	147945811	-	147945542	147945811	A3SS	ENSMUST00000030886.15	known	0.14	8	49	8	49	y	0.13	9	60	9	60	y	0.18	8	36	8	36	y	0.18	6	27	6	27	y	0.06	4	58	4	58	y	0.11	8	66	8	66	y	0.13	10	66	10	66	y	0.09	7	67	7	67	y	0.0239906292479469	3.01574813970021	up	ENSMUSG00000029022.19	Miip	chr4	protein_coding	migration and invasion inhibitory protein
known_NIR_13317	chr4	148234123	148236071	-	148234123	148236470	A5SS	ENSMUST00000168503.8	known	0.41	42	60	42	60	y	0.40	35	52	35	52	y	0.33	52	104	52	104	y	0.52	44	41	44	41	y	0.60	36	24	36	24	y	0.53	58	51	58	51	y	0.51	36	34	36	34	y	0.61	41	26	41	26	y	0.0242394959800406	-3.17033288269591	down	ENSMUSG00000055401.15	Fbxo6	chr4	protein_coding	F-box protein 6
known_NIR_13337	chr4	148701500	148702023	-	148701301	148702023	A3SS	ENSMUST00000188134.7	known	0.10	6	56	6	56	y	0.13	7	47	7	47	y	0.07	3	41	3	41	y	0.05	2	42	2	42	y	0.04	2	49	2	49	y	0.00	0	70	0	70	n	0.06	4	58	4	58	y	0.00	0	61	0	61	n	0.0358509930358226	2.7116307227332	up	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13348	chr4	148709833	148710502	-	148709833	148711138	A5SS	ENSMUST00000165113.8	known	0.00	0	153	0	153	n	0.00	0	98	0	98	n	0.01	2	234	2	234	y	0.00	0	211	0	211	n	0.01	1	164	1	164	n	0.01	2	167	2	167	y	0.01	1	159	1	159	n	0.02	3	163	3	163	y	0.0300197452875444	-2.82842712474619	down	ENSMUSG00000041459.16	Tardbp	chr4	protein_coding	TAR DNA binding protein
known_NIR_13462	chr4	156028470	156033464	+	156030874	156033464	A5SS&ES	ENSMUST00000024056.10	known	0.10	10	87	10	87	y	0.14	11	65	11	65	y	0.11	19	153	19	153	y	0.10	8	69	8	69	y	0.04	3	72	3	72	y	0.10	11	101	11	101	y	0.07	8	103	8	103	y	0.07	8	115	8	115	y	0.0356798545167757	2.74574770049664	up	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13463	chr4	156028470;156030874	156030712;156033464	+	156028470	156033464	cassetteExon	ENSMUST00000103175.8	known	0.84	54.0	10	21;87	10	y	0.78	40.0	11	15;65	11	y	0.82	89.5	19	26;153	19	y	0.84	42.5	8	16;69	8	y	0.93	42.5	3	13;72	3	y	0.85	61.5	11	22;101	11	y	0.89	63.0	8	23;103	8	y	0.90	71.5	8	28;115	8	y	0.0162933969997207	-3.33384724379117	down	ENSMUSG00000023286.17	Ube2j2	chr4	protein_coding	ubiquitin-conjugating enzyme E2J 2
known_NIR_13573	chr4	41771213	41773465	-	41771235	41773465	A3SS	ENSMUST00000136768.8	known	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.00	0	3	0	3	n	0.00	0	10	0	10	n	0.18	2	9	2	9	y	0.24	4	13	4	13	y	0.19	3	13	3	13	y	0.30	3	7	3	7	y	0.0452770745908208	-2.69589189490556	down	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13579	chr4	41773350	41773465	-	41771213	41773465	A3SS	ENSMUST00000151142.8	known	0.80	4	1	4	1	n	0.78	7	2	7	2	n	1.00	2	0	2	0	n	1.00	4	0	4	0	n	0.67	4	2	4	2	n	0.43	3	4	3	4	n	0.57	4	3	4	3	n	0.57	4	3	4	3	n	0.00571694908984649	4.2804729854996	up	ENSMUSG00000073888.14	Ccl27a	chr4	protein_coding	chemokine (C-C motif) ligand 27A
known_NIR_13590	chr4	43037206	43039815	-	43037206	43045648	A5SS	ENSMUST00000107956.8	known	0.40	2	3	2	3	n	0.75	6	2	6	2	n	0.33	1	2	1	2	n	0.50	2	2	2	2	n	0.00	0	6	0	6	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.27	4	11	4	11	y	0.0406646547408412	2.66875695060897	up	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13593	chr4	43037206	43045648	-	43037206	43039966	5pMXE	ENSMUST00000107958.8	known	0.18	3	14	3	14	y	0.13	2	13	2	13	y	0.10	2	19	2	19	y	0.13	2	13	2	13	y	0.33	6	12	6	12	y	0.52	11	10	11	10	y	0.50	5	5	5	5	y	0.48	11	12	11	12	y	0.00254923082419365	-6.95858609672737	down	ENSMUSG00000036002.13	Fam214b	chr4	protein_coding	family with sequence similarity 214, member B
known_NIR_13607	chr4	43570906	43571189	-	43570911	43571189	A3SS	ENSMUST00000128403.8	known	0.00	0	17	0	17	n	0.00	0	17	0	17	n	-	-	-	-	-	-	0.00	0	16	0	16	n	0.11	2	16	2	16	y	0.12	3	21	3	21	y	0.13	2	13	2	13	y	0.11	2	16	2	16	y	0.000148250183677307	-24.5449494897534	down	ENSMUSG00000028467.16	Gba2	chr4	protein_coding	glucosidase beta 2
known_NIR_13653	chr4	45853366;45855629	45855375;45858147	+	45853366	45858147	cassetteExon	ENSMUST00000107782.8	known	0.39	7.0	11	0;14	11	n	0.45	9.0	11	0;18	11	n	0.32	13.0	28	3;23	28	y	0.39	13.0	20	4;22	20	y	0.59	11.5	8	2;21	8	y	0.47	11.5	13	2;21	13	y	0.48	7.5	8	0;15	8	n	0.44	15.5	20	3;28	20	y	0.0453084986221186	-2.5471001743641	down	ENSMUSG00000028327.15	Stra6l	chr4	protein_coding	STRA6-like
known_NIR_13684	chr4	53840783	53847477	+	53840783	53848866	A3SS	ENSMUST00000030127.13	known	0.02	3	193	3	193	y	0.01	2	218	2	218	y	0.02	6	309	6	309	y	0.01	3	219	3	219	y	0.00	0	163	0	163	n	0.01	3	302	3	302	y	0.01	2	205	2	205	y	0.00	1	289	1	289	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000028420.14	Tmem38b	chr4	protein_coding	transmembrane protein 38B
known_NIR_13707	chr4	59517755	59524404	-	59517755	59524395	A5SS	ENSMUST00000030076.12	known	0.00	0	23	0	23	n	0.08	1	12	1	12	n	0.05	2	38	2	38	y	0.07	2	25	2	25	y	0.12	3	21	3	21	y	0.19	10	43	10	43	y	0.29	4	10	4	10	y	0.21	8	30	8	30	y	0.0144418414102671	-3.88658565297216	down	ENSMUSG00000028382.16	Ptbp3	chr4	protein_coding	polypyrimidine tract binding protein 3
known_NIR_13732	chr4	62618050	62618235	+	62618131	62618235	A5SS	ENSMUST00000125369.8	known	0.13	2	13	2	13	y	0.08	1	12	1	12	n	0.05	1	18	1	18	n	0.05	1	20	1	20	n	0.00	0	6	0	6	n	0.06	1	17	1	17	n	0.00	0	7	0	7	n	0.00	0	16	0	16	n	0.0429965021282737	2.59237923682606	up	ENSMUSG00000059810.19	Rgs3	chr4	protein_coding	regulator of G-protein signaling 3
known_NIR_13773	chr4	82241947	82245966	-	82215048	82245966	A3SS	ENSMUST00000064770.9	known	0.62	5	3	5	3	n	0.56	9	7	9	7	y	0.64	14	8	14	8	y	0.69	27	12	27	12	y	0.53	9	8	9	8	y	0.45	15	18	15	18	y	0.54	13	11	13	11	y	0.57	20	15	20	15	y	0.0301383151299122	2.82735878585076	up	ENSMUSG00000008575.18	Nfib	chr4	protein_coding	nuclear factor I/B
known_NIR_13820	chr4	9576973	9583812	-	9542310	9583812	A3SS	ENSMUST00000078139.13	known	0.71	30	12	30	12	y	0.71	35	14	35	14	y	0.65	74	39	74	39	y	0.60	46	31	46	31	y	0.78	39	11	39	11	y	0.72	55	21	55	21	y	0.78	31	9	31	9	y	0.74	42	15	42	15	y	0.0373908135650445	-2.86731172181664	down	ENSMUSG00000028207.19	Asph	chr4	protein_coding	aspartate-beta-hydroxylase
known_NIR_13835	chr4	97909191	97951250	+	97909191;97929916	97929788;97951250	ES	ENSMUST00000075448.13	known	0.00	0	17.0	0	14;20	n	0.00	0	14.0	0	6;22	n	0.09	5	53.0	5	37;69	y	0.00	0	25.0	0	25;25	n	0.10	2	17.5	2	13;22	y	0.15	6	35.0	6	34;36	y	0.05	1	17.5	1	16;19	n	0.16	6	32.5	6	40;25	y	0.0346618686760871	-2.73015027208521	down	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13836	chr4	97909191	97951250	+	97929916	97951250	A5SS&ES	ENSMUST00000107057.8	known	0.00	0	20	0	20	n	0.00	0	22	0	22	n	0.07	5	69	5	69	y	0.00	0	25	0	25	n	0.08	2	22	2	22	y	0.14	6	36	6	36	y	0.05	1	19	1	19	n	0.19	6	25	6	25	y	0.0442344582546065	-2.72387815350136	down	ENSMUSG00000028565.19	Nfia	chr4	protein_coding	nuclear factor I/A
known_NIR_13863	chr5	100516211	100517455	-	100516211	100523067	A5SS	ENSMUST00000182569.2	known	0.99	114	1	114	1	n	1.00	146	0	146	0	n	0.99	218	3	218	3	y	1.00	157	0	157	0	n	0.97	99	3	99	3	y	0.98	164	4	164	4	y	0.96	146	6	146	6	y	0.99	140	2	140	2	y	0.0453983125632166	2.82842712474619	up	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13866	chr5	100516211;100521574	100521284;100523067	-	100516211	100523067	cassetteExon	ENSMUST00000182569.2	known	0.99	84.5	1	22;147	1	n	1.00	92.5	0	24;161	0	n	0.98	121.5	3	37;206	3	y	1.00	96.0	0	28;164	0	n	0.96	74.5	3	21;128	3	y	0.97	123.0	4	36;210	4	y	0.94	102.5	6	21;184	6	y	0.98	94.5	2	28;161	2	y	0.0301783957783108	3.06452351073149	up	ENSMUSG00000035325.17	Sec31a	chr5	protein_coding	Sec31 homolog A (S. cerevisiae)
known_NIR_13935	chr5	108724545	108728773	-	108724545	108724694	5pMXE	ENSMUST00000199010.2	known	0.98	82	2	82	2	y	0.94	89	6	89	6	y	0.98	134	3	134	3	y	0.93	89	7	89	7	y	0.90	57	6	57	6	y	0.88	98	13	98	13	y	0.90	88	10	88	10	y	0.91	80	8	80	8	y	0.0126001078187221	4.11596604342022	up	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13937	chr5	108724545;108725115	108724694;108728773	-	108724545	108728773	cassetteExon	ENSMUST00000156110.8	known	0.06	5.5	82	2;9	82	y	0.04	4.0	89	6;2	89	y	0.02	3.0	134	3;3	134	y	0.06	5.5	89	7;4	89	y	0.09	5.5	57	6;5	57	y	0.11	11.5	98	13;10	98	y	0.09	8.5	88	10;7	88	y	0.10	8.5	80	8;9	80	y	0.00622029148750037	-4.9045433482176	down	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13939	chr5	108731015;108732244	108732098;108733207	-	108731015	108733207	cassetteExon	ENSMUST00000156110.8	known	0.85	72.0	13	67;77	13	y	0.82	69.5	15	75;64	15	y	0.87	108.0	16	97;119	16	y	0.84	92.5	17	107;78	17	y	0.89	63.0	8	76;50	8	y	0.89	104.0	13	113;95	13	y	0.87	76.5	11	83;70	11	y	0.86	79.5	13	87;72	13	y	0.0483750678819886	-2.53332222960036	down	ENSMUSG00000062234.15	Gak	chr5	protein_coding	cyclin G associated kinase
known_NIR_13946	chr5	108777909	108786103	+	108777766	108786103	A5SS	ENSMUST00000146207.6	known	0.83	10	2	10	2	y	1.00	5	0	5	0	n	0.73	11	4	11	4	y	0.78	7	2	7	2	n	0.50	3	3	3	3	n	0.64	9	5	9	5	y	0.45	5	6	5	6	y	0.72	13	5	13	5	y	0.0237773485182104	3.0108036740852	up	ENSMUSG00000013495.16	Tmem175	chr5	protein_coding	transmembrane protein 175
known_NIR_13958	chr5	110144499	110154810	+	110144499	110151219	3pMXE	ENSMUST00000142180.2	known	0.25	5	15	5	15	y	0.50	4	4	4	4	n	0.33	7	14	7	14	y	0.35	8	15	8	15	y	0.47	9	10	9	10	y	0.53	9	8	9	8	y	0.60	9	6	9	6	y	0.65	11	6	11	6	y	0.0222594472620661	-3.13382153136672	down	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
known_NIR_13959	chr5	110144499;110151318	110151219;110154810	+	110144499	110154810	cassetteExon	ENSMUST00000112540.8	known	0.69	11.0	5	15;7	5	y	0.62	6.5	4	4;9	4	y	0.52	7.5	7	14;1	7	n	0.57	10.5	8	15;6	8	y	0.54	10.5	9	10;11	9	y	0.49	8.5	9	8;9	9	y	0.40	6.0	9	6;6	9	y	0.37	6.5	11	6;7	11	y	0.0313193694642196	2.80157762864111	up	ENSMUSG00000066613.15	Zfp932	chr5	protein_coding	zinc finger protein 932
known_NIR_13977	chr5	110526121	110526760	-	110526363	110526760	A3SS	ENSMUST00000196801.5	known	0.60	9	6	9	6	y	0.67	6	3	6	3	n	0.43	9	12	9	12	y	0.65	11	6	11	6	y	0.38	5	8	5	8	y	0.52	17	16	17	16	y	0.40	6	9	6	9	y	0.39	7	11	7	11	y	0.0493931935201872	2.59405960053399	up	ENSMUSG00000043323.18	Fbrsl1	chr5	protein_coding	fibrosin-like 1
known_NIR_14028	chr5	114584367	114588302	+	114584367	114588338	A3SS	ENSMUST00000137167.8	known	0.20	18	71	18	71	y	0.17	9	43	9	43	y	0.16	13	66	13	66	y	0.23	21	70	21	70	y	0.35	28	51	28	51	y	0.25	29	88	29	88	y	0.24	28	89	28	89	y	0.27	26	72	26	72	y	0.0309007567565041	-2.96156766846422	down	ENSMUSG00000041939.15	Mvk	chr5	protein_coding	mevalonate kinase
known_NIR_14033	chr5	114935975	114936579	+	114935975	114936582	A3SS	ENSMUST00000102578.11	known	0.16	6	31	6	31	y	0.11	3	25	3	25	y	0.18	8	37	8	37	y	0.22	9	32	9	32	y	0.07	2	25	2	25	y	0.08	3	34	3	34	y	0.09	3	31	3	31	y	0.11	3	25	3	25	y	0.0327082098830578	3.27738596159481	up	ENSMUSG00000041870.18	Ankrd13a	chr5	protein_coding	ankyrin repeat domain 13a
known_NIR_14087	chr5	121522167	121522820	-	121522167	121523372	A5SS	ENSMUST00000152265.8	known	0.00	0	40	0	40	n	0.00	0	31	0	31	n	0.00	0	45	0	45	n	0.02	1	43	1	43	n	0.04	2	44	2	44	y	0.02	1	59	1	59	n	0.04	1	26	1	26	n	0.07	5	65	5	65	y	0.0272485570955982	-3.27326835353989	down	ENSMUSG00000042726.15	Trafd1	chr5	protein_coding	TRAF type zinc finger domain containing 1
known_NIR_14239	chr5	125119031	125119809	-	125119028	125119809	A3SS	ENSMUST00000125053.8	known	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.25	1	3	1	3	n	0.18	2	9	2	9	y	0.29	2	5	2	5	n	0.25	4	12	4	12	y	0.000473822331593367	-6.85772120175293	down	ENSMUSG00000029478.17	Ncor2	chr5	protein_coding	nuclear receptor co-repressor 2
known_NIR_14248	chr5	125465328	125466974	-	125465328	125466761	A5SS	ENSMUST00000136312.2	known	0.02	5	311	5	311	y	0.03	5	183	5	183	y	0.02	4	251	4	251	y	0.03	9	324	9	324	y	0.02	5	319	5	319	y	0.01	6	431	6	431	y	0.01	5	436	5	436	y	0.01	6	482	6	482	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000008348.10	Ubc	chr5	protein_coding	ubiquitin C
known_NIR_14249	chr5	125528836;125529309	125529212;125531390	+	125528836	125531390	cassetteExon	ENSMUST00000049040.14	known	0.01	0.5	61	0;1	61	n	0.02	1.5	76	0;3	76	n	0.03	2.0	65	3;1	65	n	0.01	0.5	76	1;0	76	n	0.06	4.5	76	2;7	76	y	0.05	5.5	115	5;6	115	y	0.06	5.5	91	6;5	91	y	0.05	4.5	82	3;6	82	y	0.00118023553704493	-6.70820393249937	down	ENSMUSG00000037905.14	Bri3bp	chr5	protein_coding	Bri3 binding protein
known_NIR_14270	chr5	129792958	129793791	+	129793005	129793791	A5SS	ENSMUST00000119604.8	known	0.76	16	5	16	5	y	0.68	17	8	17	8	y	0.78	21	6	21	6	y	0.67	22	11	22	11	y	0.82	18	4	18	4	y	0.81	21	5	21	5	y	0.76	16	5	16	5	y	0.88	29	4	29	4	y	0.0435762376867536	-2.55808652053164	down	ENSMUSG00000034211.15	Mrps17	chr5	protein_coding	mitochondrial ribosomal protein S17
known_NIR_14307	chr5	134267746	134269097	-	134267746;134268425	134268351;134269097	ES	ENSMUST00000059042.15	known	0.07	12	160.0	12	151;169	y	0.06	10	158.5	10	144;173	y	0.07	9	113.0	9	97;129	y	0.06	9	141.0	9	136;146	y	0.03	4	145.5	4	132;159	y	0.04	11	246.5	11	213;280	y	0.02	5	202.5	5	186;219	y	0.05	12	221.5	12	219;224	y	0.0122088038324649	4.24264068711928	up	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14308	chr5	134267746	134269097	-	134268425	134269097	3pMXE	ENSMUST00000173888.8	known	0.07	12	169	12	169	y	0.05	10	173	10	173	y	0.07	9	129	9	129	y	0.06	9	146	9	146	y	0.02	4	159	4	159	y	0.04	11	280	11	280	y	0.02	5	219	5	219	y	0.05	12	224	12	224	y	0.0192769674941264	3.3717089216941	up	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14324	chr5	134324467;134335585	134335386;134343237	-	134324467	134343237	cassetteExon	ENSMUST00000059042.15	known	0.10	2.0	18	3;1	18	n	0.08	1.0	11	2;0	11	n	0.04	1.0	23	0;2	23	n	0.09	2.5	25	5;0	25	n	0.00	0.0	18	0;0	18	n	0.04	1.5	36	2;1	36	n	0.02	0.5	27	1;0	27	n	0.03	1.0	33	1;1	33	n	0.0163357830590808	3.50786042278804	up	ENSMUSG00000060261.17	Gtf2i	chr5	protein_coding	general transcription factor II I
known_NIR_14461	chr5	139216593	139219226	+	139216593;139216992	139216882;139219226	ES	ENSMUST00000058716.14	known	0.19	2	8.5	2	4;13	y	0.10	1	9.5	1	9;10	n	0.08	1	11.0	1	12;10	n	0.19	2	8.5	2	7;10	y	0.29	2	5.0	2	3;7	y	0.24	3	9.5	3	7;12	y	0.24	2	6.5	2	7;6	y	0.21	2	7.5	2	7;8	y	0.0277562842632609	-3.1304951684997	down	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14462	chr5	139216593	139219226	+	139216992	139219226	5pMXE	ENSMUST00000126108.2	known	0.13	2	13	2	13	y	0.09	1	10	1	10	n	0.09	1	10	1	10	n	0.17	2	10	2	10	y	0.22	2	7	2	7	n	0.20	3	12	3	12	y	0.25	2	6	2	6	n	0.20	2	8	2	8	y	0.00749292108502086	-4.33333333333333	down	ENSMUSG00000036817.15	Sun1	chr5	protein_coding	Sad1 and UNC84 domain containing 1
known_NIR_14512	chr5	143084255	143098654	-	143084260	143098654	A3SS	ENSMUST00000053498.13	known	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.00	0	4	0	4	n	0.00	0	16	0	16	n	0.33	1	2	1	2	n	0.33	3	6	3	6	n	0.33	1	2	1	2	n	0.07	1	14	1	14	n	0.0266432078716156	-4.07692307692308	down	ENSMUSG00000045078.13	Rnf216	chr5	protein_coding	ring finger protein 216
known_NIR_14531	chr5	144817510	144818428	-	144817519	144818428	A3SS	ENSMUST00000110677.8	known	0.18	4	18	4	18	y	0.09	2	21	2	21	y	0.17	4	20	4	20	y	0.14	3	18	3	18	y	0.23	5	17	5	17	y	0.26	12	35	12	35	y	0.26	7	20	7	20	y	0.39	11	17	11	17	y	0.0206412086355116	-3.41226674755003	down	ENSMUSG00000038780.15	Smurf1	chr5	protein_coding	SMAD specific E3 ubiquitin protein ligase 1
known_NIR_14742	chr5	31302096	31302584	-	31302096	31302590	A5SS	ENSMUST00000154241.8	known	0.01	1	95	1	95	n	0.02	2	85	2	85	y	0.03	6	167	6	167	y	0.02	3	128	3	128	y	0.01	1	69	1	69	n	0.01	1	174	1	174	n	0.00	0	131	0	131	n	0.01	1	134	1	134	n	0.0478566196408534	2.61116483933547	up	ENSMUSG00000107283.4	Mpv17	chr5	protein_coding	MpV17 mitochondrial inner membrane protein
known_NIR_14796	chr5	33424381	33432123	-	33424381	33426786	5pMXE	ENSMUST00000201275.4	known	0.09	11	113	11	113	y	0.06	4	66	4	66	y	0.07	10	140	10	140	y	0.08	10	114	10	114	y	0.05	5	91	5	91	y	0.02	3	161	3	161	y	0.05	6	112	6	112	y	0.04	5	117	5	117	y	0.0107898116549913	3.65563077506965	up	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14797	chr5	33424381;33426978	33426786;33432123	-	33424381	33432123	cassetteExon	ENSMUST00000079746.10	known	0.87	76.0	11	113;39	11	y	0.92	48.0	4	66;30	4	y	0.91	103.0	10	140;66	10	y	0.89	83.5	10	114;53	10	y	0.92	54.5	5	91;18	5	y	0.97	111.5	3	161;62	3	y	0.92	73.0	6	112;34	6	y	0.95	88.0	5	117;59	5	y	0.0425591175828314	-2.57260968875712	down	ENSMUSG00000037373.13	Ctbp1	chr5	protein_coding	C-terminal binding protein 1
known_NIR_14813	chr5	33879272	33879650	+	33879298	33879650	A5SS	ENSMUST00000201437.4	known	0.80	8	2	8	2	y	0.78	7	2	7	2	n	0.89	8	1	8	1	n	0.77	10	3	10	3	y	1.00	13	0	13	0	n	0.86	19	3	19	3	y	0.90	9	1	9	1	n	0.92	22	2	22	2	y	0.0341044237721342	-2.73578801855594	down	ENSMUSG00000054252.19	Fgfr3	chr5	protein_coding	fibroblast growth factor receptor 3
known_NIR_14856	chr5	35998745;36006249	36006148;36014472	+	35998745	36014472	cassetteExon	ENSMUST00000151636.8	known	0.58	5.5	4	6;5	4	y	0.40	2.0	3	1;3	3	n	0.33	1.5	3	3;0	3	n	0.60	3.0	2	1;5	2	n	1.00	1.5	0	1;2	0	n	0.64	3.5	2	1;6	2	n	1.00	1.5	0	1;2	0	n	1.00	2.0	0	2;2	0	n	0.0097669022892441	-3.86228714671179	down	ENSMUSG00000029095.18	Ablim2	chr5	protein_coding	actin-binding LIM protein 2
known_NIR_14870	chr5	3744893	3750356	-	3744875	3750356	A3SS	ENSMUST00000043551.11	known	1.00	17	0	17	0	n	0.83	10	2	10	2	y	0.90	37	4	37	4	y	0.84	16	3	16	3	y	0.75	9	3	9	3	y	0.69	22	10	22	10	y	0.71	17	7	17	7	y	0.72	18	7	18	7	y	0.0161089885159875	4.27062213260594	up	ENSMUSG00000040351.12	Ankib1	chr5	protein_coding	ankyrin repeat and IBR domain containing 1
known_NIR_14949	chr5	62761999;62763552	62763418;62769047	-	62761999	62769047	cassetteExon	ENSMUST00000160620.3	known	1.00	6.0	0	6;6	0	n	1.00	8.0	0	11;5	0	n	0.93	14.0	1	15;13	1	n	0.90	17.5	2	19;16	2	y	0.80	16.5	4	24;9	4	y	0.82	9.0	2	10;8	2	y	0.83	10.0	2	19;1	2	n	0.74	17.0	6	21;13	6	y	0.00296392668453527	4.9475334914887	up	ENSMUSG00000037999.14	Arap2	chr5	protein_coding	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
known_NIR_15118	chr5	92221137	92231388	-	92221137	92231194	A5SS	ENSMUST00000167918.8	known	0.93	42	3	42	3	y	0.87	20	3	20	3	y	0.89	111	14	111	14	y	0.94	64	4	64	4	y	0.93	41	3	41	3	y	0.97	56	2	56	2	y	0.98	42	1	42	1	n	0.99	66	1	66	1	n	0.0311474533453959	-2.84161333666989	down	ENSMUSG00000029405.17	G3bp2	chr5	protein_coding	GTPase activating protein (SH3 domain) binding protein 2
known_NIR_15143	chr5	97247539	97251219	-	97247602	97251219	A3SS	ENSMUST00000069453.9	known	0.05	1	19	1	19	n	0.00	0	11	0	11	n	0.04	1	22	1	22	n	0.00	0	13	0	13	n	0.20	2	8	2	8	y	0.07	2	25	2	25	y	0.14	2	12	2	12	y	0.19	4	17	4	17	y	0.0161684078828462	-3.92307692307692	down	ENSMUSG00000055725.12	Paqr3	chr5	protein_coding	progestin and adipoQ receptor family member III
known_NIR_15178	chr6	113247662	113254792	+	113247662	113254751	A3SS	ENSMUST00000113146.9	known	0.08	2	22	2	22	y	0.14	5	32	5	32	y	0.05	2	37	2	37	y	0.07	3	38	3	38	y	0.00	0	26	0	26	n	0.00	0	36	0	36	n	0.00	0	43	0	43	n	0.00	0	46	0	46	n	0.0219043195875987	4.38938112570174	up	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
known_NIR_15258	chr6	116315451	116369485	+	116315451;116353824	116353654;116369485	ES	ENSMUST00000079012.13	known	0.10	6	57.0	6	51;63	y	0.10	5	43.0	5	32;54	y	0.14	10	61.0	10	64;58	y	0.10	9	85.0	9	72;98	y	0.09	5	48.0	5	43;53	y	0.04	5	128.0	5	105;151	y	0.05	3	57.5	3	46;69	y	0.04	3	80.0	3	64;96	y	0.012860221462122	3.53797136496472	up	ENSMUSG00000025702.16	Marchf8	chr6	protein_coding	membrane associated ring-CH-type finger 8
known_NIR_15307	chr6	120376043	120379467	+	120376018	120379467	A5SS	ENSMUST00000135802.8	known	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.00	0	4	0	4	n	0.09	1	10	1	10	n	0.25	5	15	5	15	y	0.25	3	9	3	9	y	0.11	2	16	2	16	y	0.0287478974831372	-3.47771306881065	down	ENSMUSG00000030180.16	Kdm5a	chr6	protein_coding	lysine (K)-specific demethylase 5A
known_NIR_15529	chr6	145160510	145160910	+	145157202	145160910	A5SS	ENSMUST00000111725.8	known	0.50	2	2	2	2	n	0.57	4	3	4	3	n	0.29	2	5	2	5	n	0.33	1	2	1	2	n	1.00	2	0	2	0	n	0.50	4	4	4	4	n	0.86	6	1	6	1	n	0.71	10	4	10	4	y	0.0408474852526867	-2.73209303927019	down	ENSMUSG00000040370.14	Etfrf1	chr6	protein_coding	electron transfer flavoprotein regulatory factor 1
known_NIR_15531	chr6	145166450;145170923	145170800;145177821	-	145166450	145177821	cassetteExon	ENSMUST00000032399.12	known	0.34	20.0	38	25;15	38	y	0.41	21.5	31	24;19	31	y	0.31	46.5	103	53;40	103	y	0.44	24.0	30	26;22	30	y	0.46	23.5	28	16;31	28	y	0.52	35.0	32	35;35	32	y	0.44	26.0	33	24;28	33	y	0.46	40.5	48	38;43	48	y	0.0430814972439715	-2.73294081846669	down	ENSMUSG00000030265.15	Kras	chr6	protein_coding	Kirsten rat sarcoma viral oncogene homolog
known_NIR_15551	chr6	146914016;146914445	146914416;146917720	+	146914016	146917720	cassetteExon	ENSMUST00000016631.14	known	0.14	2.5	16	3;2	16	y	0.11	2.0	16	2;2	16	y	0.07	3.0	38	3;3	38	y	0.08	1.5	17	2;1	17	n	0.18	3.0	14	3;3	14	y	0.25	6.5	20	8;5	20	y	0.20	3.0	12	4;2	12	y	0.17	5.0	24	4;6	24	y	0.00585615722854658	-4.20084025208403	down	ENSMUSG00000016487.16	Ppfibp1	chr6	protein_coding	PTPRF interacting protein, binding protein 1 (liprin beta 1)
known_NIR_15577	chr6	149043202	149048656	+	149043202	149045532	3pMXE	ENSMUST00000111547.2	known	0.06	2	33	2	33	y	0.10	4	35	4	35	y	0.01	1	68	1	68	n	0.06	3	50	3	50	y	0.17	8	40	8	40	y	0.20	12	49	12	49	y	0.09	3	32	3	32	y	0.14	9	57	9	57	y	0.0226370613849837	-3.10133309706048	down	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15582	chr6	149044213	149045513	+	149044213	149045532	A3SS	ENSMUST00000126406.8	known	0.01	1	95	1	95	n	0.04	4	89	4	89	y	0.02	6	369	6	369	y	0.03	4	147	4	147	y	0.00	0	82	0	82	n	0.01	2	167	2	167	y	0.00	0	94	0	94	n	0.00	1	210	1	210	n	0.0327788032416222	3.25041803331577	up	ENSMUSG00000039958.18	Etfbkmt	chr6	protein_coding	electron transfer flavoprotein beta subunit lysine methyltransferase
known_NIR_15630	chr6	29356696	29361559	+	29356696	29361293	A3SS&ES	ENSMUST00000173694.5	known	0.44	41	53	41	53	y	0.36	27	48	27	48	y	0.33	131	265	131	265	y	0.38	54	87	54	87	y	0.51	39	38	39	38	y	0.58	86	63	86	63	y	0.53	39	34	39	34	y	0.48	86	92	86	92	y	0.00338351652056125	-4.70871261835897	down	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15631	chr6	29356696;29361486	29361293;29361559	+	29356696	29361559	cassetteExon	ENSMUST00000090481.14	known	0.39	26.5	41	53;0	41	n	0.48	24.5	27	48;1	27	n	0.50	133.0	131	265;1	131	n	0.45	43.5	54	87;0	54	n	0.33	19.0	39	38;0	39	n	0.27	32.5	86	63;2	86	y	0.30	17.0	39	34;0	39	n	0.35	47.0	86	92;2	86	y	0.00381199733260467	4.80026595007916	up	ENSMUSG00000029767.17	Calu	chr6	protein_coding	calumenin
known_NIR_15644	chr6	30126358	30140215	+	30126358	30144580	A3SS	ENSMUST00000115206.8	known	0.40	2	3	2	3	n	0.75	3	1	3	1	n	0.44	4	5	4	5	n	0.60	3	2	3	2	n	0.20	1	4	1	4	n	0.29	5	12	5	12	y	0.31	4	9	4	9	y	0.14	1	6	1	6	n	0.0215263746052088	3.49431123291071	up	ENSMUSG00000058440.15	Nrf1	chr6	protein_coding	nuclear respiratory factor 1
known_NIR_15716	chr6	35229717	35237345	+	35229980	35237345	A5SS	ENSMUST00000136110.2	known	0.68	366	171	366	171	y	0.72	485	188	485	188	y	0.71	473	189	473	189	y	0.69	396	174	396	174	y	0.68	334	155	334	155	y	0.64	618	341	618	341	y	0.67	386	190	386	190	y	0.68	371	171	371	171	y	0.0484096468930958	2.47152457704546	up	ENSMUSG00000073155.13	1810058I24Rik	chr6	protein_coding	RIKEN cDNA 1810058I24 gene
known_NIR_15753	chr6	40448759	40449005	+	40448393	40449005	A5SS	ENSMUST00000114779.9	known	0.31	22	48	22	48	y	0.27	15	40	15	40	y	0.20	12	47	12	47	y	0.28	18	47	18	47	y	0.38	21	34	21	34	y	0.35	28	51	28	51	y	0.41	28	41	28	41	y	0.38	24	40	24	40	y	0.00897217592865727	-4.3726973286189	down	ENSMUSG00000029911.15	Ssbp1	chr6	protein_coding	single-stranded DNA binding protein 1
known_NIR_15768	chr6	42334919	42335777	+	42334919	42335103	3pMXE	ENSMUST00000203401.3	known	1.00	2	0	2	0	n	0.50	5	5	5	5	y	1.00	2	0	2	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00598625569770709	7	up	ENSMUSG00000029860.17	Zyx	chr6	protein_coding	zyxin
known_NIR_15776	chr6	47535228	47553497	-	47535228	47553470	A5SS	ENSMUST00000081721.13	known	0.25	1	3	1	3	n	0.60	3	2	3	2	n	0.40	2	3	2	3	n	0.50	2	2	2	2	n	0.00	0	7	0	7	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.20	2	8	2	8	y	0.0201502973731398	3.22639714762719	up	ENSMUSG00000029687.17	Ezh2	chr6	protein_coding	enhancer of zeste 2 polycomb repressive complex 2 subunit
known_NIR_15799	chr6	48420421	48421905	-	48420421	48422287	A5SS	ENSMUST00000101443.10	known	0.06	1	16	1	16	n	0.05	1	18	1	18	n	0.00	0	5	0	5	n	0.04	1	22	1	22	n	0.29	5	12	5	12	y	0.06	2	29	2	29	y	0.22	8	28	8	28	y	0.29	11	27	11	27	y	0.0429364480746792	-3.18052182252302	down	ENSMUSG00000068551.13	Zfp467	chr6	protein_coding	zinc finger protein 467
known_NIR_15840	chr6	48815299	48816272	-	48815299	48818282	A5SS	ENSMUST00000205147.3	known	0.53	9	8	9	8	y	0.74	23	8	23	8	y	0.65	30	16	30	16	y	0.61	14	9	14	9	y	0.38	6	10	6	10	y	0.48	12	13	12	13	y	0.46	6	7	6	7	y	0.35	6	11	6	11	y	0.00866864348345267	4.00686819899407	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15842	chr6	48815299	48817930	-	48815299	48817295	5pMXE	ENSMUST00000164733.4	known	0.38	255	415	255	415	y	0.33	246	503	246	503	y	0.37	427	741	427	741	y	0.46	340	396	340	396	y	0.48	296	321	296	321	y	0.44	352	444	352	444	y	0.50	248	246	248	246	y	0.48	314	342	314	342	y	0.0372490825916779	-3	down	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15847	chr6	48815299;48816379	48816272;48817295	-	48815299	48817295	cassetteExon	ENSMUST00000164733.4	known	0.02	9.0	415	9;9	415	y	0.03	17.5	503	23;12	503	y	0.03	25.0	741	30;20	741	y	0.03	10.5	396	14;7	396	y	0.01	4.0	321	6;2	321	y	0.02	9.0	444	12;6	444	y	0.02	5.0	246	6;4	246	y	0.02	7.0	342	6;8	342	y	0.0300197452875444	2.82842712474619	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15849	chr6	48815299;48817387	48817295;48818282	-	48815299	48818282	cassetteExon	ENSMUST00000205147.3	known	0.96	207.5	8	415;0	8	n	0.97	254.5	8	503;6	8	y	0.96	373.0	16	741;5	16	y	0.96	198.0	9	396;0	9	n	0.94	160.5	10	321;0	10	n	0.95	223.5	13	444;3	13	y	0.95	124.0	7	246;2	7	y	0.94	171.5	11	342;1	11	n	0.00395758466635657	4.58257569495583	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
known_NIR_15879	chr6	51521732	51538998	+	51521629	51538998	A5SS	ENSMUST00000137212.8	known	0.31	23	52	23	52	y	0.21	14	54	14	54	y	0.26	75	213	75	213	y	0.15	17	93	17	93	y	0.07	4	52	4	52	y	0.10	9	79	9	79	y	0.17	10	48	10	48	y	0.12	8	60	8	60	y	0.0330211254101138	2.9242037791398	up	ENSMUSG00000038301.16	Snx10	chr6	protein_coding	sorting nexin 10
known_NIR_15959	chr6	71828864	71829747	+	71828864	71829714	A3SS	ENSMUST00000064062.13	known	0.62	73	44	73	44	y	0.55	32	26	32	26	y	0.55	73	60	73	60	y	0.55	58	47	58	47	y	0.65	51	27	51	27	y	0.58	91	67	91	67	y	0.64	71	40	71	40	y	0.64	96	55	96	55	y	0.044995962979899	-2.5298221281347	down	ENSMUSG00000052337.16	Immt	chr6	protein_coding	inner membrane protein, mitochondrial
known_NIR_15979	chr6	72092363	72105248	+	72074978	72105248	A5SS	ENSMUST00000114112.4	known	0.99	234	3	234	3	y	0.99	259	2	259	2	y	0.98	491	8	491	8	y	0.98	176	4	176	4	y	0.97	77	2	77	2	y	0.98	236	4	236	4	y	0.98	150	3	150	3	y	0.97	102	3	102	3	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000056091.13	St3gal5	chr6	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 5
known_NIR_15995	chr6	72338522	72339259	-	72338522	72339224	A5SS	ENSMUST00000069580.12	known	0.08	16	190	16	190	y	0.10	16	138	16	138	y	0.12	27	190	27	190	y	0.10	23	208	23	208	y	0.12	23	177	23	177	y	0.16	49	252	49	252	y	0.14	33	200	33	200	y	0.14	32	203	32	203	y	0.013399964712331	-3.46410161513776	down	ENSMUSG00000055850.13	Rnf181	chr6	protein_coding	ring finger protein 181
known_NIR_15996	chr6	72394996	72395219	+	72394996	72395284	A3SS	ENSMUST00000065906.9	known	0.05	4	83	4	83	y	0.10	5	45	5	45	y	0.07	6	74	6	74	y	0.05	6	113	6	113	y	0.03	2	64	2	64	y	0.02	2	110	2	110	y	0.00	0	66	0	66	n	0.05	4	69	4	69	y	0.036174639797383	2.69920623252731	up	ENSMUSG00000053460.9	Ggcx	chr6	protein_coding	gamma-glutamyl carboxylase
known_NIR_16090	chr6	83953332	83960958	+	83958767	83960958	A5SS&ES	ENSMUST00000113836.6	known	0.23	3	10	3	10	y	0.20	4	16	4	16	y	0.23	6	20	6	20	y	0.32	6	13	6	13	y	0.15	3	17	3	17	y	0.20	7	28	7	28	y	0.15	5	28	5	28	y	0.15	2	11	2	11	y	0.0419127855690306	2.8614628994296	up	ENSMUSG00000030016.15	Zfp638	chr6	protein_coding	zinc finger protein 638
known_NIR_16132	chr6	86371565	86373955	-	86371565	86372896	5pMXE	ENSMUST00000129650.2	known	0.23	27	93	27	93	y	0.25	18	54	18	54	y	0.21	30	115	30	115	y	0.19	40	172	40	172	y	0.16	20	106	20	106	y	0.11	28	216	28	216	y	0.19	24	105	24	105	y	0.18	31	139	31	139	y	0.0376016757339814	2.72915295688405	up	ENSMUSG00000029998.15	Pcyox1	chr6	protein_coding	prenylcysteine oxidase 1
known_NIR_16181	chr6	87902792;87909964	87909841;87910224	+	87902792	87910224	cassetteExon	ENSMUST00000032141.14	known	0.13	2.5	17	2;3	17	y	0.08	3.0	34	1;5	34	n	0.09	5.0	50	2;8	50	y	0.10	3.0	27	1;5	27	n	0.05	1.0	18	0;2	18	n	0.08	3.5	43	3;4	43	y	0.00	0.0	32	0;0	32	n	0.00	0.0	27	0;0	27	n	0.0329919519946801	3	up	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
known_NIR_16182	chr6	87902792;87909964	87909845;87910224	+	87902792	87910224	cassetteExon	ENSMUST00000032141.14	known	0.08	1.5	17	0;3	17	n	0.07	2.5	34	0;5	34	n	0.07	4.0	50	0;8	50	n	0.08	2.5	27	0;5	27	n	0.05	1.0	18	0;2	18	n	0.04	2.0	43	0;4	43	n	0.00	0.0	32	0;0	32	n	0.00	0.0	27	0;0	27	n	0.0253193011111016	3.89960210171809	up	ENSMUSG00000030060.15	Hmces	chr6	protein_coding	5-hydroxymethylcytosine (hmC) binding, ES cell specific
known_NIR_16235	chr6	93678362	93684985	-	93678362;93681341	93681258;93684985	ES	ENSMUST00000089317.12	known	0.93	19	1.5	19	1;2	n	0.91	15	1.5	15	1;2	n	0.94	16	1.0	16	0;2	n	0.91	21	2.0	21	1;3	n	1.00	17	0.0	17	0;0	n	0.97	33	1.0	33	2;0	n	1.00	15	0.0	15	0;0	n	0.95	21	1.0	21	0;2	n	0.0103999256116085	-4.00378608698105	down	ENSMUSG00000045095.17	Magi1	chr6	protein_coding	membrane associated guanylate kinase, WW and PDZ domain containing 1
known_NIR_16245	chr6	98922384	98922495	-	98922387	98922495	A3SS	ENSMUST00000113326.9	known	0.59	13	9	13	9	y	0.44	4	5	4	5	n	0.43	12	16	12	16	y	0.33	9	18	9	18	y	0.26	5	14	5	14	y	0.35	7	13	7	13	y	0.23	3	10	3	10	y	0.25	4	12	4	12	y	0.0383940734988894	2.92514290269111	up	ENSMUSG00000030067.18	Foxp1	chr6	protein_coding	forkhead box P1
known_NIR_16268	chr7	100294876;100299239	100299135;100302861	-	100294876	100302861	cassetteExon	ENSMUST00000107046.8	known	0.09	6.0	58	4;8	58	y	0.10	8.5	73	8;9	73	y	0.10	5.5	51	7;4	51	y	0.09	6.0	61	7;5	61	y	0.05	3.5	62	3;4	62	y	0.08	11.5	134	13;10	134	y	0.08	7.0	83	8;6	83	y	0.06	4.5	65	2;7	65	y	0.0281586705241803	3.4219405926104	up	ENSMUSG00000030701.18	Plekhb1	chr7	protein_coding	pleckstrin homology domain containing, family B (evectins) member 1
known_NIR_16361	chr7	101885761	101886329	+	101885749	101886329	A5SS	ENSMUST00000120879.8	known	0.46	40	47	40	47	y	0.49	32	33	32	33	y	0.47	33	37	33	37	y	0.55	41	34	41	34	y	0.58	44	32	44	32	y	0.55	48	40	48	40	y	0.56	41	32	41	32	y	0.56	39	31	39	31	y	0.0348408961677054	-3.3152155594482	down	ENSMUSG00000030990.19	Pgap2	chr7	protein_coding	post-GPI attachment to proteins 2
known_NIR_16374	chr7	105039559;105040874	105040784;105049091	-	105039559	105049091	cassetteExon	ENSMUST00000179474.9	known	0.04	0.5	11	1;0	11	n	0.14	1.0	6	0;2	6	n	0.18	2.0	9	4;0	9	n	0.00	0.0	16	0;0	16	n	0.30	3.0	7	4;2	7	y	0.30	3.5	8	4;3	8	y	0.47	3.5	4	4;3	4	y	0.14	3.0	18	6;0	18	n	0.043787207603839	-2.67592133758737	down	ENSMUSG00000044465.20	Fam160a2	chr7	protein_coding	family with sequence similarity 160, member A2
known_NIR_16450	chr7	114152045	114153826	-	114152588	114153826	A3SS	ENSMUST00000032908.15	known	0.09	5	48	5	48	y	0.11	2	17	2	17	y	0.10	4	35	4	35	y	0.07	4	55	4	55	y	0.18	12	54	12	54	y	0.14	9	57	9	57	y	0.11	5	41	5	41	y	0.16	8	43	8	43	y	0.0256841547760603	-3.19771044853596	down	ENSMUSG00000030670.17	Cyp2r1	chr7	protein_coding	cytochrome P450, family 2, subfamily r, polypeptide 1
known_NIR_16485	chr7	118449912	118452112	-	118449912	118451626	A5SS	ENSMUST00000116280.9	known	0.09	4	43	4	43	y	0.12	6	44	6	44	y	0.17	11	55	11	55	y	0.19	13	54	13	54	y	0.24	13	41	13	41	y	0.23	14	47	14	47	y	0.17	10	48	10	48	y	0.21	11	41	11	41	y	0.049761213968791	-2.53500088919052	down	ENSMUSG00000030980.18	Knop1	chr7	protein_coding	lysine rich nucleolar protein 1
known_NIR_16503	chr7	119391566	119391654	-	119391571	119391654	A3SS	ENSMUST00000106523.8	known	0.25	3	9	3	9	y	0.40	2	3	2	3	n	0.40	4	6	4	6	y	0.50	2	2	2	2	n	0.00	0	2	0	2	n	0.00	0	15	0	15	n	0.00	0	6	0	6	n	0.29	2	5	2	5	n	0.0144760422149459	3.54122639211186	up	ENSMUSG00000030929.18	Eri2	chr7	protein_coding	exoribonuclease 2
known_NIR_16554	chr7	126068500;126068742	126068660;126070294	-	126068500	126070294	cassetteExon	ENSMUST00000205440.2	known	0.06	4.0	61	5;3	61	y	0.04	2.5	67	3;2	67	y	0.04	3.0	82	2;4	82	y	0.08	5.5	61	3;8	61	y	0.03	1.5	50	2;1	50	n	0.01	1.5	114	1;2	114	n	0.01	1.0	74	2;0	74	n	0.04	3.0	82	4;2	82	y	0.0389814444523074	2.67223596832737	up	ENSMUSG00000030733.11	Sh2b1	chr7	protein_coding	SH2B adaptor protein 1
known_NIR_16603	chr7	126496110	126521982	-	126496110	126496198	5pMXE	ENSMUST00000120007.8	known	0.02	3	126	3	126	y	0.02	2	114	2	114	y	0.02	2	104	2	104	y	0.01	2	133	2	133	y	0.00	0	124	0	124	n	0.01	1	186	1	186	n	0.00	0	145	0	145	n	0.01	3	218	3	218	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16608	chr7	126498095	126521982	-	126496110	126521982	A3SS	ENSMUST00000121612.4	known	0.97	100	3	100	3	y	0.97	75	2	75	2	y	0.97	67	2	67	2	y	0.98	99	2	99	2	y	1.00	84	0	84	0	n	0.99	129	1	129	1	n	1.00	133	0	133	0	n	0.98	169	3	169	3	y	0.0166979601915548	-3.70328039909021	down	ENSMUSG00000060538.15	Tmem219	chr7	protein_coding	transmembrane protein 219
known_NIR_16616	chr7	126578168	126578477	+	126578168	126578494	A3SS	ENSMUST00000032920.5	known	0.01	2	143	2	143	y	0.02	3	133	3	133	y	0.01	1	182	1	182	n	0.02	3	135	3	135	y	0.00	0	111	0	111	n	0.00	0	146	0	146	n	0.00	0	150	0	150	n	0.00	0	137	0	137	n	0.013846832988859	5.19615242270663	up	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
known_NIR_16759	chr7	130511358	130512562	+	130511465	130512562	A5SS	ENSMUST00000120441.8	known	0.67	2	1	2	1	n	0.60	3	2	3	2	n	0.76	16	5	16	5	y	0.50	2	2	2	2	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	-	-	-	-	-	-	0.00682975995813157	-6.68412027256067	down	ENSMUSG00000040268.18	Plekha1	chr7	protein_coding	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
known_NIR_16786	chr7	132429611	132438829	-	132433305	132438829	3pMXE	ENSMUST00000152410.8	known	0.22	4	14	4	14	y	0.19	5	22	5	22	y	0.13	3	20	3	20	y	0.21	5	19	5	19	y	0.04	1	23	1	23	n	0.15	6	34	6	34	y	0.06	1	15	1	15	n	0.05	1	19	1	19	n	0.0143101166519079	3.47527477924444	up	ENSMUSG00000030960.17	Eef1akmt2	chr7	protein_coding	EEF1A lysine methyltransferase 2
known_NIR_16811	chr7	136978080	137012369	-	136989430	137012369	3pMXE	ENSMUST00000135335.2	known	0.07	2	25	2	25	y	0.00	0	17	0	17	n	0.00	0	11	0	11	n	0.03	1	28	1	28	n	0.12	4	28	4	28	y	0.08	3	36	3	36	y	0.18	5	23	5	23	y	0.07	2	25	2	25	y	0.0313836531726146	-2.92004831031453	down	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16813	chr7	136978080;136989430	136989100;137012369	-	136978080	137012369	cassetteExon	ENSMUST00000145881.8	known	0.93	27.0	2	29;25	2	y	1.00	18.5	0	20;17	0	n	1.00	8.5	0	6;11	0	n	0.96	25.0	1	22;28	1	n	0.86	25.0	4	22;28	4	y	0.91	30.0	3	24;36	3	y	0.83	25.0	5	27;23	5	y	0.92	22.0	2	19;25	2	y	0.0155417726661101	3.40132534234922	up	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
known_NIR_16836	chr7	139697269	139706239	+	139697269	139708931	A3SS	ENSMUST00000209908.2	known	0.26	9	25	9	25	y	0.29	9	22	9	22	y	0.33	4	8	4	8	y	0.36	15	27	15	27	y	0.51	31	30	31	30	y	0.47	27	31	27	31	y	0.36	19	34	19	34	y	0.54	37	32	37	32	y	0.0181784214360078	-3.54826210058195	down	ENSMUSG00000025464.16	Paox	chr7	protein_coding	polyamine oxidase (exo-N4-amino)
known_NIR_16917	chr7	140877529	140890675	-	140877529;140881602	140881513;140890675	ES	ENSMUST00000080553.9	known	0.15	5	28.0	5	39;17	y	0.17	8	39.0	8	54;24	y	0.14	4	25.0	4	31;19	y	0.11	4	31.5	4	42;21	y	0.09	3	29.5	3	35;24	y	0.06	3	48.0	3	62;34	y	0.08	3	34.0	3	32;36	y	0.03	1	38.0	1	45;31	n	0.00537068024755561	4.25817748240936	up	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16919	chr7	140877529;140881599	140881513;140890675	-	140877529	140890675	cassetteExon	ENSMUST00000209600.2	known	0.81	21.5	5	39;4	5	y	0.78	29.0	8	54;4	8	y	0.81	17.0	4	31;3	4	y	0.85	22.5	4	42;3	4	y	0.86	19.0	3	35;3	3	y	0.91	31.0	3	62;0	3	n	0.86	18.0	3	32;4	3	y	0.96	22.5	1	45;0	1	n	0.0292446638273291	-3.04511531353531	down	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16920	chr7	140881599	140890675	-	140881602	140890675	A3SS	ENSMUST00000080553.9	known	0.19	4	17	4	17	y	0.14	4	24	4	24	y	0.14	3	19	3	19	y	0.12	3	21	3	21	y	0.11	3	24	3	24	y	0.00	0	34	0	34	n	0.10	4	36	4	36	y	0.00	0	31	0	31	n	0.0438589615286164	2.80648599432879	up	ENSMUSG00000058886.10	Deaf1	chr7	protein_coding	DEAF1, transcription factor
known_NIR_16978	chr7	14161975	14171410	-	14161975	14170312	5pMXE	ENSMUST00000211800.2	known	0.82	36	8	36	8	y	0.79	26	7	26	7	y	1.00	1	0	1	0	n	0.78	68	19	68	19	y	0.54	32	27	32	27	y	0.68	53	25	53	25	y	0.68	46	22	46	22	y	0.77	20	6	20	6	y	0.0426915218600061	2.56815495002312	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16980	chr7	14161975	14171410	-	14161975	14180367	A5SS	ENSMUST00000209425.2	known	0.29	36	89	36	89	y	0.27	26	70	26	70	y	0.17	1	5	1	5	n	0.25	68	208	68	208	y	0.09	32	309	32	309	y	0.13	53	354	53	354	y	0.20	46	181	46	181	y	0.14	20	127	20	127	y	0.0239885174604918	3.02061879935792	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16981	chr7	14161975	14171410	-	14161975	14180521	A5SS	ENSMUST00000125941.3	known	0.15	36	203	36	203	y	0.16	26	141	26	141	y	0.14	1	6	1	6	n	0.13	68	461	68	461	y	0.05	32	645	32	645	y	0.06	53	809	53	809	y	0.11	46	377	46	377	y	0.06	20	315	20	315	y	0.00620018735777237	5	up	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16986	chr7	14161975	14180367	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.13	89	584	89	584	y	0.15	70	400	70	400	y	0.19	5	22	5	22	y	0.18	208	957	208	957	y	0.37	309	535	309	535	y	0.31	354	804	354	804	y	0.26	181	517	181	517	y	0.24	127	397	127	397	y	0.0126053350163037	-4.12604440405607	down	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_16987	chr7	14161975	14180521	-	14161975	14172381	5pMXE	ENSMUST00000168252.9	known	0.26	203	584	203	584	y	0.26	141	400	141	400	y	0.21	6	22	6	22	y	0.33	461	957	461	957	y	0.55	645	535	645	535	y	0.50	809	804	809	804	y	0.42	377	517	377	517	y	0.44	315	397	315	397	y	0.00164613304504555	-5.52134332092386	down	ENSMUSG00000030378.16	Sult2a8	chr7	protein_coding	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8
known_NIR_17027	chr7	143030042	143033457	+	143030042;143033119	143033022;143033457	ES	ENSMUST00000052348.12	known	0.01	4	319.5	4	332;307	y	0.01	2	218.0	2	205;231	y	0.00	0	71.0	0	73;69	n	0.00	0	380.5	0	368;393	n	0.02	5	295.5	5	263;328	y	0.02	8	371.5	8	371;372	y	0.02	6	297.0	6	289;305	y	0.01	4	427.5	4	425;430	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000000154.17	Slc22a18	chr7	protein_coding	solute carrier family 22 (organic cation transporter), member 18
known_NIR_17038	chr7	143365037	143366500	-	143365037;143366344	143366227;143366500	ES	ENSMUST00000033415.15	known	0.29	10	25.0	10	26;24	y	0.35	9	16.5	9	19;14	y	0.28	9	23.5	9	26;21	y	0.23	9	30.5	9	32;29	y	0.23	8	26.5	8	28;25	y	0.08	3	36.5	3	39;34	y	0.07	2	28.0	2	26;30	y	0.15	5	29.0	5	25;33	y	0.0164064059830408	3.4840992190839	up	ENSMUSG00000031090.15	Nadsyn1	chr7	protein_coding	NAD synthetase 1
known_NIR_17067	chr7	16135231	16150698	+	16134966	16150698	A5SS	ENSMUST00000214735.2	known	0.75	3	1	3	1	n	0.64	7	4	7	4	y	0.62	13	8	13	8	y	0.62	5	3	5	3	n	0.00	0	9	0	9	n	0.23	3	10	3	10	y	0.46	6	7	6	7	y	0.42	8	11	8	11	y	0.0315350436676318	3.46230379392067	up	ENSMUSG00000059273.10	Zc3h4	chr7	protein_coding	zinc finger CCCH-type containing 4
known_NIR_17103	chr7	19095241	19102471	+	19095241	19102467	A3SS	ENSMUST00000140836.8	known	0.33	2	4	2	4	n	0.33	1	2	1	2	n	0.21	3	11	3	11	y	0.29	2	5	2	5	n	0.11	1	8	1	8	n	0.19	3	13	3	13	y	0.00	0	3	0	3	n	0.20	1	4	1	4	n	0.0289257933797008	3.04219616512186	up	ENSMUSG00000040734.15	Ppp1r13l	chr7	protein_coding	protein phosphatase 1, regulatory subunit 13 like
known_NIR_17181	chr7	25320517;25320937	25320849;25321769	+	25320517	25321769	cassetteExon	ENSMUST00000077338.12	known	0.10	9.5	86	15;4	86	y	0.06	5.5	87	7;4	87	y	0.09	4.0	43	3;5	43	y	0.08	9.5	114	14;5	114	y	0.06	5.5	84	8;3	84	y	0.04	5.5	125	7;4	125	y	0.04	5.0	117	8;2	117	y	0.06	8.5	142	15;2	142	y	0.0235448974419351	3.15296312547233	up	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
known_NIR_17189	chr7	25415612;25416424	25416279;25418343	-	25415612	25418343	cassetteExon	ENSMUST00000002683.3	known	0.15	5.5	32	7;4	32	y	0.16	6.5	34	6;7	34	y	0.08	5.0	54	5;5	54	y	0.08	3.0	34	3;3	34	y	0.19	7.0	29	10;4	29	y	0.16	6.5	35	7;6	35	y	0.24	7.0	22	8;6	22	y	0.17	6.0	30	8;4	30	y	0.0432424404063804	-2.58011474249358	down	ENSMUSG00000002608.9	Ccdc97	chr7	protein_coding	coiled-coil domain containing 97
known_NIR_17275	chr7	28938036	28943495	+	28937861	28943495	A5SS	ENSMUST00000108238.8	known	0.49	30	31	30	31	y	0.66	31	16	31	16	y	0.52	28	26	28	26	y	0.67	51	25	51	25	y	0.84	67	13	67	13	y	0.72	67	26	67	26	y	0.81	57	13	57	13	y	0.74	88	31	88	31	y	0.0170703214007076	-3.52558780801635	down	ENSMUSG00000030588.13	Yif1b	chr7	protein_coding	Yip1 interacting factor homolog B (S. cerevisiae)
known_NIR_17373	chr7	30753795	30754190	-	30753795	30754743	A5SS	ENSMUST00000206328.2	known	0.65	70	38	70	38	y	0.61	63	40	63	40	y	0.72	57	22	57	22	y	0.61	60	38	60	38	y	0.59	48	33	48	33	y	0.53	62	56	62	56	y	0.56	48	37	48	37	y	0.53	57	51	57	51	y	0.0262222956072045	3.20396673572025	up	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17374	chr7	30753795	30754190	-	30753795	30754976	A5SS	ENSMUST00000205807.2	known	0.11	70	539	70	539	y	0.08	63	726	63	726	y	0.15	57	320	57	320	y	0.10	60	553	60	553	y	0.07	48	598	48	598	y	0.07	62	890	62	890	y	0.05	48	844	48	844	y	0.07	57	755	57	755	y	0.0489906927564682	2.89470384406205	up	ENSMUSG00000036570.15	Fxyd1	chr7	protein_coding	FXYD domain-containing ion transport regulator 1
known_NIR_17445	chr7	3697413	3697597	+	3696888	3697597	A5SS	ENSMUST00000108630.8	known	0.14	5	30	5	30	y	0.06	2	32	2	32	y	0.09	3	29	3	29	y	0.09	4	42	4	42	y	0.05	2	35	2	35	y	0.00	0	51	0	51	n	0.06	3	48	3	48	y	0.00	0	46	0	46	n	0.0263745656849552	2.92856118055186	up	ENSMUSG00000035585.17	Tsen34	chr7	protein_coding	tRNA splicing endonuclease subunit 34
known_NIR_17476	chr7	42139700	42155034	-	42139700;42150849	42150782;42155034	ES	ENSMUST00000174407.3	known	0.86	6	1.0	6	0;2	n	0.80	2	0.5	2	1;0	n	0.82	7	1.5	7	1;2	n	0.75	6	2.0	6	2;2	y	0.00	0	4.0	0	6;2	n	0.29	3	7.5	3	9;6	y	0.50	2	2.0	2	3;1	n	0.48	7	7.5	7	6;9	y	0.0220008824431732	4.14681334006609	up	ENSMUSG00000092416.3	Zfp141	chr7	protein_coding	zinc finger protein 141
known_NIR_17498	chr7	44117583	44117730	+	44117614	44117730	A5SS	ENSMUST00000118493.8	known	0.12	2	14	2	14	y	0.00	0	15	0	15	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.12	3	22	3	22	y	0.09	1	10	1	10	n	0.12	3	22	3	22	y	0.25	6	18	6	18	y	0.0499194973432915	-2.46585883012693	down	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17504	chr7	44117583;44117841	44117730;44118234	+	44117583	44118234	cassetteExon	ENSMUST00000120852.8	known	0.50	3.0	3	2;4	3	n	0.33	1.0	2	0;2	2	n	0.50	1.0	1	0;2	1	n	0.33	2.0	4	0;4	4	n	0.67	2.0	1	3;1	1	n	0.69	4.5	2	1;8	2	n	0.60	3.0	2	3;3	2	n	0.80	4.0	1	6;2	1	n	0.00553495282789659	-4.28174419288837	down	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17507	chr7	44117614	44118231	+	44117614	44118234	A3SS	ENSMUST00000035844.11	known	0.95	63	3	63	3	y	0.93	55	4	55	4	y	0.93	52	4	52	4	y	0.96	51	2	51	2	y	0.90	44	5	44	5	y	0.91	64	6	64	6	y	0.92	60	5	60	5	y	0.89	58	7	58	7	y	0.00945721941260726	3.78968364479934	up	ENSMUSG00000038695.14	Josd2	chr7	protein_coding	Josephin domain containing 2
known_NIR_17630	chr7	44663017	44665504	-	44663017	44663629	5pMXE	ENSMUST00000211735.2	known	0.45	13	16	13	16	y	0.35	7	13	7	13	y	0.50	16	16	16	16	y	0.68	13	6	13	6	y	0.20	3	12	3	12	y	0.31	15	34	15	34	y	0.21	3	11	3	11	y	0.39	11	17	11	17	y	0.0447240574129854	2.63797905541005	up	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17632	chr7	44663759	44664889	-	44663759	44665504	A5SS	ENSMUST00000210056.2	known	0.60	3	2	3	2	n	0.83	5	1	5	1	n	0.14	1	6	1	6	n	0.40	4	6	4	6	y	1.00	4	0	4	0	n	1.00	3	0	3	0	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.0406614728757668	-3.45927815627787	down	ENSMUSG00000038406.18	Scaf1	chr7	protein_coding	SR-related CTD-associated factor 1
known_NIR_17680	chr7	44781836	44783322	-	44781836	44783306	A5SS	ENSMUST00000209467.2	known	0.00	0	13	0	13	n	0.13	2	13	2	13	y	0.00	0	10	0	10	n	0.00	0	9	0	9	n	0.21	3	11	3	11	y	0.17	4	20	4	20	y	0.06	1	17	1	17	n	0.17	4	19	4	19	y	0.0395241031029359	-2.62121638708301	down	ENSMUSG00000089989.11	Gm45713	chr7	protein_coding	predicted gene 45713
known_NIR_17710	chr7	45124799	45125029	-	45115695	45125029	A3SS	ENSMUST00000210701.2	known	0.98	162	4	162	4	y	0.98	117	2	117	2	y	0.98	44	1	44	1	n	0.99	202	2	202	2	y	0.99	151	1	151	1	n	1.00	266	1	266	1	n	1.00	150	0	150	0	n	0.99	230	2	230	2	y	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000109926.2	Gm45808	chr7	protein_coding	predicted gene 45808
known_NIR_17755	chr7	45547090	45556342	+	45547090	45549056	3pMXE	ENSMUST00000210044.2	known	0.17	7	33	7	33	y	0.26	10	29	10	29	y	0.28	18	46	18	46	y	0.18	9	40	9	40	y	0.10	4	35	4	35	y	0.10	5	44	5	44	y	0.12	5	36	5	36	y	0.18	11	49	11	49	y	0.0316712146626165	2.89884717036395	up	ENSMUSG00000002781.20	Tmem143	chr7	protein_coding	transmembrane protein 143
known_NIR_17804	chr7	46558711	46560493	-	46558816	46560493	A3SS	ENSMUST00000014546.15	known	0.06	3	49	3	49	y	0.03	1	38	1	38	n	0.00	0	85	0	85	n	0.05	2	42	2	42	y	0.08	4	44	4	44	y	0.10	8	70	8	70	y	0.14	7	44	7	44	y	0.08	5	59	5	59	y	0.0153969766739728	-3.35658556671309	down	ENSMUSG00000014402.16	Tsg101	chr7	protein_coding	tumor susceptibility gene 101
known_NIR_17900	chr7	64050092	64061583	+	64050254	64061583	A5SS	ENSMUST00000037205.11	known	0.16	46	240	46	240	y	0.15	45	260	45	260	y	0.14	11	70	11	70	y	0.14	40	239	40	239	y	0.12	37	268	37	268	y	0.13	51	354	51	354	y	0.11	38	301	38	301	y	0.12	43	329	43	329	y	0.00499569655677369	4.37095677831465	up	ENSMUSG00000033429.11	Mcee	chr7	protein_coding	methylmalonyl CoA epimerase
known_NIR_17922	chr7	65719274;65719946	65719867;65720338	+	65719274	65720338	cassetteExon	ENSMUST00000206150.2	known	0.77	54.0	16	49;59	16	y	0.87	55.0	8	54;56	8	y	0.86	48.5	8	47;50	8	y	0.83	52.0	11	55;49	11	y	0.72	46.5	18	52;41	18	y	0.66	51.5	26	55;48	26	y	0.76	44.5	14	36;53	14	y	0.71	59.0	24	60;58	24	y	0.00777670245872827	3.93671917305942	up	ENSMUSG00000030512.14	Snrpa1	chr7	protein_coding	small nuclear ribonucleoprotein polypeptide A'
known_NIR_17939	chr7	67195216	67267741	-	67195216;67209717	67209606;67267741	ES	ENSMUST00000187953.8	known	0.09	4	43.0	4	53;33	y	0.14	6	36.5	6	42;31	y	0.14	8	48.5	8	79;18	y	0.12	7	52.0	7	55;49	y	0.08	2	22.5	2	32;13	y	0.05	3	62.5	3	77;48	y	0.05	2	35.0	2	43;27	y	0.10	4	37.5	4	45;30	y	0.0215575046905479	3.08512327330867	up	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17940	chr7	67195216	67267741	-	67195216;67209812	67209606;67267741	ES	ENSMUST00000053950.10	known	0.10	4	35.5	4	53;18	y	0.17	6	30.0	6	42;18	y	0.13	8	52.5	8	79;26	y	0.16	7	37.5	7	55;20	y	0.08	2	22.5	2	32;13	y	0.06	3	49.5	3	77;22	y	0.06	2	29.0	2	43;15	y	0.13	4	27.5	4	45;10	y	0.0456997100893147	2.51449978392256	up	ENSMUSG00000030556.14	Lrrc28	chr7	protein_coding	leucine rich repeat containing 28
known_NIR_17951	chr7	67297593	67301671	+	67297593	67312075	A3SS	ENSMUST00000133710.8	known	-	-	-	-	-	-	0.33	2	4	2	4	n	0.22	2	7	2	7	n	0.29	2	5	2	5	n	-	-	-	-	-	-	0.17	2	10	2	10	y	0.00	0	9	0	9	n	0.00	0	7	0	7	n	0.0382883945082479	3.42801821764756	up	ENSMUSG00000030555.17	Ttc23	chr7	protein_coding	tetratricopeptide repeat domain 23
known_NIR_17963	chr7	67971653	67999982	+	67971653;67979147	67978970;67999982	ES	ENSMUST00000125685.9	known	0.03	1	30.5	1	28;33	n	0.00	0	26.0	0	24;28	n	0.00	0	20.5	0	16;25	n	0.00	0	54.5	0	48;61	n	0.05	1	20.5	1	15;26	n	0.06	3	45.5	3	43;48	y	0.03	1	31.5	1	28;35	n	0.02	1	41.0	1	32;50	n	0.0345486933283661	-2.75084790184853	down	ENSMUSG00000074071.12	Fam169b	chr7	protein_coding	family with sequence similarity 169, member B
known_NIR_17970	chr7	7243206	7244891	-	7243206	7270218	A5SS	ENSMUST00000209833.2	known	0.80	4	1	4	1	n	1.00	2	0	2	0	n	1.00	2	0	2	0	n	0.62	5	3	5	3	n	0.78	7	2	7	2	n	0.44	4	5	4	5	n	0.29	4	10	4	10	y	0.30	3	7	3	7	y	0.0350419785402307	2.74835815706303	up	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_17971	chr7	7243206	7270218	-	7243206;7247293	7244891;7270218	ES	ENSMUST00000210333.2	known	0.20	1	4.0	1	4;4	n	0.00	0	1.5	0	2;1	n	0.00	0	2.0	0	2;2	n	0.55	3	2.5	3	5;0	n	0.33	2	4.0	2	7;1	n	0.71	5	2.0	5	4;0	n	0.80	10	2.5	10	4;1	n	0.74	7	2.5	7	3;2	y	0.0357404167324223	-2.72447349376884	down	ENSMUSG00000110105.2	Gm45844	chr7	protein_coding	predicted gene 45844
known_NIR_18090	chr7	89604812	89605552	-	89604812	89605463	A5SS	ENSMUST00000238981.2	known	0.11	5	40	5	40	y	0.10	7	62	7	62	y	0.06	4	62	4	62	y	0.03	1	33	1	33	n	0.15	8	44	8	44	y	0.14	11	66	11	66	y	0.16	7	38	7	38	y	0.15	10	58	10	58	y	0.0241636668790748	-3.96202907846531	down	ENSMUSG00000030619.11	Eed	chr7	protein_coding	embryonic ectoderm development
known_NIR_18092	chr7	89776252	89776805	-	89776252	89779080	A5SS	ENSMUST00000209164.2	known	0.22	6	21	6	21	y	0.21	7	27	7	27	y	0.25	5	15	5	15	y	0.30	9	21	9	21	y	0.18	4	18	4	18	y	0.11	4	33	4	33	y	0.13	4	27	4	27	y	0.18	4	18	4	18	y	0.0127239566983758	3.52821142536399	up	ENSMUSG00000097162.3	2310010J17Rik	chr7	lncRNA	RIKEN cDNA 2310010J17 gene
known_NIR_18140	chr7	98002337	98002684	-	98002337	98010449	A5SS	ENSMUST00000206414.2	known	0.59	54	38	54	38	y	0.62	46	28	46	28	y	0.59	40	28	40	28	y	0.60	41	27	41	27	y	0.83	24	5	24	5	y	0.66	50	26	50	26	y	0.68	27	13	27	13	y	0.71	10	4	10	4	y	0.0488234088053509	-3.09838667696593	down	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18141	chr7	98002337	98008565	-	98002337;98002823	98002684;98008565	ES	ENSMUST00000094161.11	known	0.31	18	41.0	18	54;28	y	0.33	18	36.5	18	46;27	y	0.42	21	29.0	21	40;18	y	0.34	16	31.5	16	41;22	y	0.22	5	17.5	5	24;11	y	0.19	8	33.5	8	50;17	y	0.30	10	23.0	10	27;19	y	0.17	2	9.5	2	10;9	y	0.0138293673549759	3.47439614486152	up	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18142	chr7	98002337	98008565	-	98002823	98008565	3pMXE	ENSMUST00000206770.2	known	0.39	18	28	18	28	y	0.40	18	27	18	27	y	0.54	21	18	21	18	y	0.42	16	22	16	22	y	0.31	5	11	5	11	y	0.32	8	17	8	17	y	0.34	10	19	10	19	y	0.18	2	9	2	9	y	0.0246154664782994	2.98265165132414	up	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
known_NIR_18152	chr7	98240091	98243959	-	98240091;98242873	98242538;98243959	ES	ENSMUST00000205911.2	known	0.14	1	6.0	1	12;0	n	0.14	1	6.0	1	11;1	n	0.14	2	12.0	2	21;3	y	0.31	2	4.5	2	9;0	n	0.38	4	6.5	4	13;0	n	0.30	3	7.0	3	14;0	n	0.28	4	10.5	4	19;2	y	0.29	2	5.0	2	9;1	n	0.0469671412358776	-2.69366181126889	down	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18153	chr7	98240091	98243959	-	98240091;98243017	98242538;98243959	ES	ENSMUST00000205276.2	known	0.11	1	8.0	1	12;4	n	0.11	1	8.0	1	11;5	n	0.12	2	15.0	2	21;9	y	0.22	2	7.0	2	9;5	y	0.38	4	6.5	4	13;0	n	0.24	3	9.5	3	14;5	y	0.24	4	12.5	4	19;6	y	0.24	2	6.5	2	9;4	y	0.0240782896929857	-3.06370137161255	down	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18155	chr7	98243192	98243959	-	98243017	98243959	A3SS	ENSMUST00000205276.2	known	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.25	3	9	3	9	y	0.17	1	5	1	5	n	-	-	-	-	-	-	0.50	5	5	5	5	y	0.40	4	6	4	6	y	0.33	2	4	2	4	n	0.0431547434070984	-2.88230676849157	down	ENSMUSG00000035401.10	Emsy	chr7	protein_coding	EMSY, BRCA2-interacting transcriptional repressor
known_NIR_18205	chr8	105777247	105778364	+	105777247	105778100	3pMXE	ENSMUST00000212329.2	known	0.09	129	1370	129	1370	y	0.08	89	1045	89	1045	y	0.04	12	303	12	303	y	0.06	144	2089	144	2089	y	0.11	209	1725	209	1725	y	0.10	231	2194	231	2194	y	0.12	211	1564	211	1564	y	0.11	204	1611	204	1611	y	0.0248919711132919	-3.59726264087885	down	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18206	chr8	105777247	105778364	+	105777247;105778253	105778100;105778364	ES	ENSMUST00000093222.13	known	0.05	129	2510.5	129	1370;3651	y	0.05	89	1794.0	89	1045;2543	y	0.02	12	492.0	12	303;681	y	0.04	144	3444.5	144	2089;4800	y	0.07	209	2943.0	209	1725;4161	y	0.06	231	3627.0	231	2194;5060	y	0.07	211	2646.0	211	1564;3728	y	0.07	204	2645.0	204	1611;3679	y	0.024125660645063	-3.66666666666667	down	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
known_NIR_18247	chr8	106429028	106429243	+	106429028	106429240	A3SS	ENSMUST00000212634.2	known	0.60	6	4	6	4	y	0.70	7	3	7	3	y	0.67	2	1	2	1	n	0.65	11	6	11	6	y	0.33	3	6	3	6	n	0.42	5	7	5	7	y	0.38	3	5	3	5	n	0.50	3	3	3	3	n	0.00214507515234734	5.94833350444849	up	ENSMUSG00000005699.17	Pard6a	chr8	protein_coding	par-6 family cell polarity regulator alpha
known_NIR_18311	chr8	112185678	112187215	-	112185681	112187215	A3SS	ENSMUST00000038193.15	known	0.00	0	14	0	14	n	0.10	1	9	1	9	n	0.08	2	23	2	23	y	0.00	0	9	0	9	n	0.18	4	18	4	18	y	0.19	5	21	5	21	y	0.11	1	8	1	8	n	0.21	4	15	4	15	y	0.0102984007330902	-3.73615512236711	down	ENSMUSG00000031959.16	Wdr59	chr8	protein_coding	WD repeat domain 59
known_NIR_18362	chr8	11608566	11611418	+	11607045	11611418	A5SS	ENSMUST00000210670.2	known	0.44	8	10	8	10	y	0.36	12	21	12	21	y	0.48	28	30	28	30	y	0.31	15	33	15	33	y	0.31	9	20	9	20	y	0.32	18	38	18	38	y	0.15	4	22	4	22	y	0.12	4	30	4	30	y	0.0409717714770633	2.65712372228532	up	ENSMUSG00000045969.9	Ing1	chr8	protein_coding	inhibitor of growth family, member 1
known_NIR_18432	chr8	123061998	123062252	+	123061998	123062171	A3SS	ENSMUST00000054052.15	known	0.05	6	114	6	114	y	0.08	7	85	7	85	y	0.06	9	138	9	138	y	0.03	4	123	4	123	y	0.00	0	81	0	81	n	0.03	6	169	6	169	y	0.03	3	110	3	110	y	0.00	0	99	0	99	n	0.026478960584075	2.95419578350399	up	ENSMUSG00000049577.16	Zfpm1	chr8	protein_coding	zinc finger protein, multitype 1
known_NIR_18512	chr8	125452114	125455108	+	125452114	125455068	A3SS	ENSMUST00000034463.4	known	0.44	4	5	4	5	n	0.25	2	6	2	6	n	0.22	2	7	2	7	n	0.33	2	4	2	4	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.00	0	7	0	7	n	0.00	0	6	0	6	n	0.00558869344819516	5.46424634928555	up	ENSMUSG00000031982.6	Arv1	chr8	protein_coding	ARV1 homolog, fatty acid homeostasis modulator
known_NIR_18514	chr8	125600218	125600958	+	125600248	125600958	A5SS	ENSMUST00000034466.10	known	0.05	3	55	3	55	y	0.05	2	38	2	38	y	0.11	8	68	8	68	y	0.07	6	82	6	82	y	0.00	0	55	0	55	n	0.04	4	86	4	86	y	0.03	2	65	2	65	y	0.01	1	67	1	67	n	0.0301711092252488	2.97044262893002	up	ENSMUSG00000031985.10	Gnpat	chr8	protein_coding	glyceronephosphate O-acyltransferase
known_NIR_18518	chr8	126461088	126462807	+	126459970	126462807	A5SS	ENSMUST00000146055.8	known	0.86	38	6	38	6	y	0.82	31	7	31	7	y	0.70	14	6	14	6	y	0.91	21	2	21	2	y	0.91	32	3	32	3	y	1.00	35	0	35	0	n	1.00	40	0	40	0	n	1.00	21	0	21	0	n	0.0318920092734033	-3.09227894193366	down	ENSMUSG00000031851.15	Ntpcr	chr8	protein_coding	nucleoside-triphosphatase, cancer-related
known_NIR_18564	chr8	13103469	13105293	+	13103473	13105293	A5SS	ENSMUST00000063820.12	known	0.03	51	1725	51	1725	y	0.03	54	2052	54	2052	y	0.04	47	1293	47	1293	y	0.04	70	1779	70	1779	y	0.02	42	1706	42	1706	y	0.03	82	2354	82	2354	y	0.02	48	1994	48	1994	y	0.03	66	2249	66	2249	y	0.0498252627805767	2.44948974278318	up	ENSMUSG00000031444.17	F10	chr8	protein_coding	coagulation factor X
known_NIR_18594	chr8	14939118;14940623	14940492;14944572	+	14939118	14944572	cassetteExon	ENSMUST00000027554.8	known	0.00	0.0	25	0;0	25	n	0.00	0.0	41	0;0	41	n	0.04	2.5	65	4;1	65	n	0.00	0.0	35	0;0	35	n	0.07	1.5	20	3;0	20	n	0.07	2.0	28	1;3	28	n	0.08	2.0	22	2;2	22	y	0.06	1.0	16	0;2	16	n	0.00524393749754293	-5.55492059863531	down	ENSMUSG00000026317.8	Cln8	chr8	protein_coding	CLN8 transmembrane ER and ERGIC protein
known_NIR_18694	chr8	3565556	3566681	+	3566568	3566681	A5SS&ES	ENSMUST00000207146.2	known	0.33	4	8	4	8	y	0.50	4	4	4	4	n	0.52	13	12	13	12	y	0.48	13	14	13	14	y	0.36	4	7	4	7	y	0.24	4	13	4	13	y	0.12	1	7	1	7	n	0.23	7	23	7	23	y	0.0155299077547108	3.36312554585697	up	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18695	chr8	3565556;3566568	3566507;3566681	+	3565556	3566681	cassetteExon	ENSMUST00000004681.14	known	0.53	4.5	4	1;8	4	n	0.47	3.5	4	3;4	4	y	0.46	11.0	13	10;12	13	y	0.38	8.0	13	2;14	13	y	0.56	5.0	4	3;7	4	y	0.71	10.0	4	7;13	4	y	0.85	5.5	1	4;7	1	n	0.71	17.0	7	11;23	7	y	0.0166857321731838	-3.70757913705204	down	ENSMUSG00000004565.16	Pnpla6	chr8	protein_coding	patatin-like phospholipase domain containing 6
known_NIR_18733	chr8	41537877	41586698	-	41537877	41586518	A5SS	ENSMUST00000059115.13	known	0.05	3	63	3	63	y	0.03	1	39	1	39	n	0.04	3	75	3	75	y	0.04	4	102	4	102	y	0.00	0	70	0	70	n	0.02	2	92	2	92	y	0.00	0	55	0	55	n	0.03	3	99	3	99	y	0.0261377052147607	3.22047024073016	up	ENSMUSG00000045636.17	Mtus1	chr8	protein_coding	mitochondrial tumor suppressor 1
known_NIR_18899	chr8	70763141	70765356	+	70763141;70764346	70764278;70765356	ES	ENSMUST00000066469.14	known	0.01	3	505.0	3	500;510	y	0.02	9	590.5	9	579;602	y	0.02	19	843.5	19	819;868	y	0.02	7	451.5	7	454;449	y	0.00	2	416.0	2	413;419	y	0.00	3	643.5	3	621;666	y	0.01	4	636.0	4	636;636	y	0.01	3	534.0	3	529;539	y	0.017467049804449	3.27326835353989	up	ENSMUSG00000055681.15	Cope	chr8	protein_coding	coatomer protein complex, subunit epsilon
known_NIR_18908	chr8	70962284	70962768	-	70962281	70962768	A3SS	ENSMUST00000140679.8	known	0.88	185	26	185	26	y	0.88	235	33	235	33	y	0.86	280	47	280	47	y	0.85	197	36	197	36	y	0.82	167	36	167	36	y	0.79	267	72	267	72	y	0.81	242	56	242	56	y	0.83	243	50	243	50	y	0.00301617956050545	4.83935479570466	up	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18912	chr8	70962284	70968045	-	70962284	70962768	5pMXE	ENSMUST00000129909.8	known	0.01	2	185	2	185	y	0.02	4	235	4	235	y	0.01	2	280	2	280	y	0.01	2	197	2	197	y	0.02	4	167	4	167	y	0.03	8	267	8	267	y	0.03	8	242	8	242	y	0.02	5	243	5	243	y	0.017467049804449	-3.27326835353989	down	ENSMUSG00000090137.9	Uba52	chr8	protein_coding	ubiquitin A-52 residue ribosomal protein fusion product 1
known_NIR_18938	chr8	71054966	71055085	-	71054966	71055051	A5SS	ENSMUST00000049908.11	known	0.15	2	11	2	11	y	0.08	2	23	2	23	y	0.05	1	18	1	18	n	0.12	2	15	2	15	y	0.00	0	3	0	3	n	0.00	0	12	0	12	n	0.08	1	12	1	12	n	0.00	0	16	0	16	n	0.0362861852900513	2.69170633964181	up	ENSMUSG00000070003.8	Ssbp4	chr8	protein_coding	single stranded DNA binding protein 4
known_NIR_18950	chr8	71212113;71212899	71212739;71213014	-	71212113	71213014	cassetteExon	ENSMUST00000038626.10	known	0.06	4.0	61	6;2	61	y	0.06	3.5	60	2;5	60	y	0.09	4.0	40	2;6	40	y	0.04	2.5	59	2;3	59	y	0.11	6.0	50	6;6	50	y	0.10	9.5	84	7;12	84	y	0.11	6.5	53	5;8	53	y	0.09	5.5	58	5;6	58	y	0.0222560662076203	-3.51953076051248	down	ENSMUSG00000035559.10	Mpv17l2	chr8	protein_coding	MPV17 mitochondrial membrane protein-like 2
known_NIR_18957	chr8	71242729;71249446	71249357;71252102	-	71242729	71252102	cassetteExon	ENSMUST00000212757.2	known	1.00	9.5	0	15;4	0	n	1.00	5.5	0	8;3	0	n	0.83	10.0	2	20;0	2	n	0.85	11.0	2	17;5	2	y	0.67	4.0	2	6;2	2	y	0.68	10.5	5	12;9	5	y	0.80	8.0	2	8;8	2	y	0.60	6.0	4	9;3	4	y	0.00988411164804211	3.73597430858767	up	ENSMUSG00000031833.11	Mast3	chr8	protein_coding	microtubule associated serine/threonine kinase 3
known_NIR_19044	chr8	80008283	80010838	-	80008283	80021543	A5SS	ENSMUST00000048718.4	known	0.77	27	8	27	8	y	0.78	21	6	21	6	y	0.65	17	9	17	9	y	0.74	37	13	37	13	y	0.89	17	2	17	2	y	0.76	37	12	37	12	y	0.84	36	7	36	7	y	0.90	45	5	45	5	y	0.041866576647166	-2.58234315265575	down	ENSMUSG00000037022.4	Mmaa	chr8	protein_coding	methylmalonic aciduria (cobalamin deficiency) type A
known_NIR_19060	chr8	84456886	84460043	-	84456886;84458666	84458532;84460043	ES	ENSMUST00000075843.13	known	0.00	0	2.5	0	3;2	n	0.00	0	2.0	0	1;3	n	0.19	2	8.5	2	10;7	y	0.20	1	4.0	1	2;6	n	0.44	2	2.5	2	3;2	n	0.40	2	3.0	2	3;3	n	0.57	2	1.5	2	2;1	n	0.57	4	3.0	4	4;2	y	0.00172810800212877	-5.5581722735449	down	ENSMUSG00000002885.15	Adgre5	chr8	protein_coding	adhesion G protein-coupled receptor E5
known_NIR_19160	chr8	94746332	94751170	-	94746332;94749517	94749403;94751170	ES	ENSMUST00000034204.11	known	0.00	0	66.0	0	55;77	n	0.00	0	79.5	0	84;75	n	0.00	0	150.5	0	129;172	n	0.00	0	69.5	0	66;73	n	0.02	1	64.5	1	67;62	n	0.02	2	99.5	2	94;105	y	0.02	2	86.5	2	87;86	y	0.03	4	117.5	4	105;130	y	0.00289581216186414	-9	down	ENSMUSG00000031754.11	Nudt21	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 21
known_NIR_19161	chr8	94746332	94751170	-	94749517	94751170	3pMXE	ENSMUST00000212911.2	known	0.00	0	77	0	77	n	0.00	0	75	0	75	n	0.00	0	172	0	172	n	0.00	0	73	0	73	n	0.02	1	62	1	62	n	0.02	2	105	2	105	y	0.02	2	86	2	86	y	0.03	4	130	4	130	y	0.00289581216186414	-9	down	ENSMUSG00000031754.11	Nudt21	chr8	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 21
known_NIR_19226	chr8	96575396	96580114	-	96575396;96579535	96579430;96580114	ES	ENSMUST00000212270.2	known	0.25	4	12.0	4	18;6	y	0.15	2	11.5	2	17;6	y	0.17	4	20.0	4	24;16	y	0.17	3	14.5	3	21;8	y	0.11	1	8.0	1	10;6	n	0.11	2	15.5	2	19;12	y	0.06	1	17.0	1	23;11	n	0.15	3	17.5	3	24;11	y	0.0373388106398943	2.68804090552477	up	ENSMUSG00000036534.7	Slc38a7	chr8	protein_coding	solute carrier family 38, member 7
known_NIR_19234	chr9	101071624	101075830	-	101071624	101088330	A5SS	ENSMUST00000075941.12	known	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.09	1	10	1	10	n	0.00	0	9	0	9	n	0.17	1	5	1	5	n	0.15	2	11	2	11	y	0.08	1	12	1	12	n	0.21	3	11	3	11	y	0.0109452846125733	-3.68309888426911	down	ENSMUSG00000043154.16	Ppp2r3a	chr9	protein_coding	protein phosphatase 2, regulatory subunit B'', alpha
known_NIR_19429	chr9	107955096	107956889	-	107955096	107956468	5pMXE	ENSMUST00000178267.8	known	0.43	9	12	9	12	y	0.36	5	9	5	9	y	0.38	8	13	8	13	y	0.26	9	25	9	25	y	0.56	14	11	14	11	y	0.40	12	18	12	18	y	0.67	14	7	14	7	y	0.49	17	18	17	18	y	0.0499932423968981	-2.56495533186154	down	ENSMUSG00000041528.16	Rnf123	chr9	protein_coding	ring finger protein 123
known_NIR_19656	chr9	121211998	121220923	+	121193365	121220923	A5SS	ENSMUST00000211301.2	known	0.46	18	21	18	21	y	0.50	9	9	9	9	y	0.45	20	24	20	24	y	0.42	15	21	15	21	y	0.17	5	24	5	24	y	0.37	17	29	17	29	y	0.33	8	16	8	16	y	0.19	6	25	6	25	y	0.0252651381075002	3.6611362462238	up	ENSMUSG00000032536.13	Trak1	chr9	protein_coding	trafficking protein, kinesin binding 1
known_NIR_19662	chr9	121524808	121534280	-	121524808	121533990	5pMXE	ENSMUST00000111560.10	known	0.00	0	8	0	8	n	0.12	1	7	1	7	n	0.29	2	5	2	5	n	0.12	1	7	1	7	n	0.44	4	5	4	5	n	0.56	5	4	5	4	n	0.75	3	1	3	1	n	0.50	3	3	3	3	n	0.00315027550004407	-4.78887599895146	down	ENSMUSG00000061536.14	Sec22c	chr9	protein_coding	SEC22 homolog C, vesicle trafficking protein
known_NIR_19677	chr9	121681675	121686578	-	121685938	121686578	A3SS&ES	ENSMUST00000213124.2	known	0.98	402	8	402	8	y	0.99	281	2	281	2	y	0.98	391	10	391	10	y	0.98	381	7	381	7	y	1.00	332	0	332	0	n	0.99	460	3	460	3	y	0.99	407	4	407	4	y	1.00	374	1	374	1	n	0.0174670498044487	-3.2732683535399	down	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19682	chr9	121681675;121685938	121685504;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.02	7.0	402	6;8	402	y	0.01	3.0	281	4;2	281	y	0.02	8.0	391	6;10	391	y	0.01	5.5	381	4;7	381	y	0.00	1.5	332	3;0	332	n	0.01	4.5	460	6;3	460	y	0.01	3.0	407	2;4	407	y	0.00	1.5	374	2;1	374	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19684	chr9	121681675;121685938	121685787;121686578	-	121681675	121686578	cassetteExon	ENSMUST00000215007.2	known	0.01	6.0	402	4;8	402	y	0.01	2.0	281	2;2	281	y	0.02	10.0	391	10;10	391	y	0.02	6.0	381	5;7	381	y	0.00	1.5	332	3;0	332	n	0.01	5.0	460	7;3	460	y	0.01	4.5	407	5;4	407	y	0.00	1.5	374	2;1	374	n	0.0498252627805768	2.44948974278318	up	ENSMUSG00000038412.9	Higd1a	chr9	protein_coding	HIG1 domain family, member 1A
known_NIR_19705	chr9	122180904	122194201	+	122180904	122204971	A3SS	ENSMUST00000111497.5	known	0.97	37	1	37	1	n	1.00	22	0	22	0	n	1.00	56	0	56	0	n	1.00	28	0	28	0	n	0.94	33	2	33	2	y	0.96	45	2	45	2	y	0.98	47	1	47	1	n	0.93	42	3	42	3	y	0.0285731188701243	2.98834947055051	up	ENSMUSG00000032540.17	Abhd5	chr9	protein_coding	abhydrolase domain containing 5
known_NIR_19744	chr9	124074380	124075190	-	124067348	124075190	A3SS	ENSMUST00000186041.2	known	0.90	9	1	9	1	n	0.83	5	1	5	1	n	0.67	4	2	4	2	n	0.85	11	2	11	2	y	1.00	6	0	6	0	n	0.91	10	1	10	1	n	1.00	9	0	9	0	n	1.00	4	0	4	0	n	0.0369027421198789	-3.02298884193467	down	ENSMUSG00000074829.11	2010315B03Rik	chr9	protein_coding	RIKEN cDNA 2010315B03 gene
known_NIR_19745	chr9	124196747	124197153	+	124196069	124197153	A5SS	ENSMUST00000239563.2	known	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.22	2	7	2	7	n	0.17	1	5	1	5	n	0.56	5	4	5	4	n	0.59	10	7	10	7	y	0.50	2	2	2	2	n	0.60	3	2	3	2	n	0.00179900555668323	-7.56405939210691	down	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
known_NIR_19771	chr9	15416937	15436924	+	15404925	15436924	A5SS	ENSMUST00000215907.2	known	0.05	1	21	1	21	n	0.03	1	39	1	39	n	0.09	4	42	4	42	y	0.06	2	30	2	30	y	0.00	0	16	0	16	n	0.03	1	34	1	34	n	0.00	0	32	0	32	n	0.00	0	28	0	28	n	0.0191671500284161	3.42997170285018	up	ENSMUSG00000058173.13	Smco4	chr9	protein_coding	single-pass membrane protein with coiled-coil domains 4
known_NIR_19833	chr9	21588973;21589347	21589249;21589612	+	21588973	21589612	cassetteExon	ENSMUST00000034707.15	known	0.02	1.5	66	3;0	66	n	0.00	0.0	87	0;0	87	n	0.03	2.0	73	0;4	73	n	0.03	2.5	70	4;1	70	n	0.09	3.5	35	4;3	35	y	0.05	4.5	78	6;3	78	y	0.04	3.0	67	3;3	67	y	0.05	4.0	71	6;2	71	y	0.0349960182933897	-2.85175912736015	down	ENSMUSG00000032187.17	Smarca4	chr9	protein_coding	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
known_NIR_19853	chr9	21839038	21840389	+	21839024	21840389	A5SS	ENSMUST00000006403.7	known	0.31	5	11	5	11	y	0.25	4	12	4	12	y	0.11	2	17	2	17	y	0.25	6	18	6	18	y	0.00	0	20	0	20	n	0.20	7	28	7	28	y	0.04	1	22	1	22	n	0.00	0	21	0	21	n	0.0377076645911923	2.66581270479552	up	ENSMUSG00000006241.17	Ccdc159	chr9	protein_coding	coiled-coil domain containing 159
known_NIR_19909	chr9	34966945	35010195	-	34966945	35027994	A5SS	ENSMUST00000034537.8	known	0.01	2	145	2	145	y	0.00	0	96	0	96	n	0.00	0	119	0	119	n	0.00	0	89	0	89	n	0.02	3	122	3	122	y	0.02	4	180	4	180	y	0.03	3	102	3	102	y	0.01	2	134	2	134	y	0.0148041432566231	-3.65563077506966	down	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19910	chr9	34966945	35010195	-	34966945	35030299	A5SS	ENSMUST00000213526.2	known	0.04	2	45	2	45	y	0.00	0	70	0	70	n	0.00	0	61	0	61	n	0.00	0	66	0	66	n	0.04	3	67	3	67	y	0.06	4	60	4	60	y	0.10	3	27	3	27	y	0.04	2	45	2	45	y	0.0313774679281493	-2.88675134594813	down	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
known_NIR_19944	chr9	38629683	38633669	+	38630629	38633669	5pMXE	ENSMUST00000129598.2	known	0.14	3	18	3	18	y	0.37	11	19	11	19	y	0.32	10	21	10	21	y	0.29	9	22	9	22	y	0.17	4	20	4	20	y	0.07	3	37	3	37	y	0.12	2	15	2	15	y	0.13	6	41	6	41	y	0.0423793283354036	2.93845499650709	up	ENSMUSG00000023186.15	Vwa5a	chr9	protein_coding	von Willebrand factor A domain containing 5A
known_NIR_19951	chr9	42173427	42175418	-	42173427	42175502	A5SS	ENSMUST00000052725.15	known	0.09	21	201	21	201	y	0.09	9	91	9	91	y	0.05	14	278	14	278	y	0.11	31	242	31	242	y	0.16	52	264	52	264	y	0.13	61	407	61	407	y	0.17	59	294	59	294	y	0.13	62	418	62	418	y	0.00918014195762762	-3.8423663968392	down	ENSMUSG00000032018.15	Sc5d	chr9	protein_coding	sterol-C5-desaturase
known_NIR_19955	chr9	42938591	42953887	-	42938591;42951892	42951836;42953887	ES	ENSMUST00000165665.9	known	0.61	24	15.5	24	14;17	y	0.52	14	13.0	14	12;14	y	0.56	44	34.0	44	39;29	y	0.55	36	29.0	36	30;28	y	0.47	23	25.5	23	26;25	y	0.51	48	46.5	48	47;46	y	0.49	23	23.5	23	30;17	y	0.49	39	40.0	39	37;43	y	0.0255100615516505	3.42928563989645	up	ENSMUSG00000059495.15	Arhgef12	chr9	protein_coding	Rho guanine nucleotide exchange factor (GEF) 12
known_NIR_20017	chr9	44954092	44954998	+	44951880	44954998	A5SS	ENSMUST00000217097.2	known	0.90	65	7	65	7	y	0.94	58	4	58	4	y	0.90	53	6	53	6	y	0.95	139	8	139	8	y	0.90	46	5	46	5	y	0.82	91	20	91	20	y	0.85	64	11	64	11	y	0.82	56	12	56	12	y	0.0202996264079046	3.26035600200999	up	ENSMUSG00000032092.6	Mpzl2	chr9	protein_coding	myelin protein zero-like 2
known_NIR_20060	chr9	46146024	46146617	-	46146024	46146820	A5SS	ENSMUST00000118649.8	known	0.10	2	19	2	19	y	0.14	3	18	3	18	y	0.14	5	31	5	31	y	0.06	2	29	2	29	y	0.03	1	32	1	32	n	0.03	1	39	1	39	n	0.04	1	27	1	27	n	0.02	1	46	1	46	n	0.0224033809194225	4.08603134764199	up	ENSMUSG00000032081.11	Apoc3	chr9	protein_coding	apolipoprotein C-III
known_NIR_20066	chr9	47730115	47759465	+	47730115;47740707	47740675;47759465	ES	ENSMUST00000085909.9	known	0.85	14	2.5	14	2;3	y	0.96	11	0.5	11	1;0	n	0.90	9	1.0	9	1;1	n	0.88	14	2.0	14	2;2	y	0.98	22	0.5	22	0;1	n	0.97	19	0.5	19	0;1	n	0.98	22	0.5	22	0;1	n	0.95	19	1.0	19	1;1	n	0.0471035567794056	-2.98583227028742	down	ENSMUSG00000032076.21	Cadm1	chr9	protein_coding	cell adhesion molecule 1
known_NIR_20170	chr9	57063295	57063456	-	57063266	57063456	A3SS	ENSMUST00000214072.2	known	0.07	11	138	11	138	y	0.05	7	143	7	143	y	0.07	9	114	9	114	y	0.04	6	162	6	162	y	0.05	6	119	6	119	y	0.03	5	178	5	178	y	0.02	4	168	4	168	y	0.02	3	131	3	131	y	0.0372550314113828	2.66789187539966	up	ENSMUSG00000032299.11	Commd4	chr9	protein_coding	COMM domain containing 4
known_NIR_20184	chr9	57353456	57358639	-	57353456	57354360	5pMXE	ENSMUST00000215208.2	known	0.06	2	33	2	33	y	0.04	1	25	1	25	n	0.09	3	30	3	30	y	0.03	1	36	1	36	n	0.00	0	36	0	36	n	0.03	1	36	1	36	n	0.00	0	28	0	28	n	0.00	0	29	0	29	n	0.02804048035161	3.12358075880179	up	ENSMUSG00000040722.8	Scamp5	chr9	protein_coding	secretory carrier membrane protein 5
known_NIR_20185	chr9	57353456	57358639	-	57353456;57354516	57354360;57358639	ES	ENSMUST00000046587.8	known	0.07	2	25.0	2	33;17	y	0.04	1	22.0	1	25;19	n	0.08	3	35.0	3	30;40	y	0.03	1	31.0	1	36;26	n	0.00	0	26.5	0	36;17	n	0.03	1	28.0	1	36;20	n	0.00	0	21.0	0	28;14	n	0.00	0	27.5	0	29;26	n	0.0194036861741528	3.37638860322683	up	ENSMUSG00000040722.8	Scamp5	chr9	protein_coding	secretory carrier membrane protein 5
known_NIR_20224	chr9	58838398	58863242	-	58838458	58863242	A3SS	ENSMUST00000068664.7	known	0.43	3	4	3	4	n	0.50	2	2	2	2	n	0.61	11	7	11	7	y	0.43	6	8	6	8	y	0.00	0	6	0	6	n	0.39	7	11	7	11	y	0.33	3	6	3	6	n	0.17	3	15	3	15	y	0.0456796504166272	2.77562517503451	up	ENSMUSG00000032340.9	Neo1	chr9	protein_coding	neogenin
known_NIR_20234	chr9	59548379	59556113	+	59548379;59549093	59549024;59556113	ES	ENSMUST00000026267.16	known	1.00	18	0.0	18	0;0	n	0.76	13	4.0	13	2;6	y	0.88	11	1.5	11	2;1	n	0.97	15	0.5	15	1;0	n	0.71	10	4.0	10	5;3	y	0.85	22	4.0	22	5;3	y	0.71	12	5.0	12	2;8	y	0.67	8	4.0	8	2;6	y	0.0496901235478509	2.50682688963485	up	ENSMUSG00000025237.17	Parp6	chr9	protein_coding	poly (ADP-ribose) polymerase family, member 6
known_NIR_20257	chr9	62252169	62279002	+	62248836	62279002	A5SS	ENSMUST00000085519.13	known	0.02	4	185	4	185	y	0.01	2	199	2	199	y	0.00	0	140	0	140	n	0.02	4	208	4	208	y	0.07	14	177	14	177	y	0.05	11	227	11	227	y	0.05	12	211	12	211	y	0.02	4	247	4	247	y	0.0342249049491965	-3.07958941544842	down	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20258	chr9	62252169	62279002	+	62249533	62279002	A5SS	ENSMUST00000135395.8	known	0.20	4	16	4	16	y	0.12	2	14	2	14	y	0.00	0	9	0	9	n	0.18	4	18	4	18	y	0.54	14	12	14	12	y	0.42	11	15	11	15	y	0.57	12	9	12	9	y	0.18	4	18	4	18	y	0.0333134197848123	-3.04312250170853	down	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20259	chr9	62252169	62279002	+	62249785	62279002	A5SS	ENSMUST00000156461.2	known	0.31	4	9	4	9	y	0.33	2	4	2	4	n	0.00	0	10	0	10	n	0.33	4	8	4	8	y	0.78	14	4	14	4	y	0.55	11	9	11	9	y	0.67	12	6	12	6	y	0.40	4	6	4	6	y	0.0208262722521798	-3.11090170495457	down	ENSMUSG00000032249.15	Anp32a	chr9	protein_coding	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
known_NIR_20310	chr9	66943410	66955406	-	66943410	66950860	5pMXE	ENSMUST00000113696.8	known	0.01	1	87	1	87	n	0.02	1	60	1	60	n	0.01	2	211	2	211	y	0.01	1	83	1	83	n	0.00	0	66	0	66	n	0.00	0	84	0	84	n	0.00	0	64	0	64	n	0.00	0	59	0	59	n	0.0153924380733023	5	up	ENSMUSG00000032366.16	Tpm1	chr9	protein_coding	tropomyosin 1, alpha
known_NIR_20317	chr9	69910949	69914346	+	69910949	69911588	3pMXE	ENSMUST00000137472.2	known	0.86	132	22	132	22	y	0.87	111	17	111	17	y	0.84	197	38	197	38	y	0.87	136	21	136	21	y	0.83	86	18	86	18	y	0.76	125	39	125	39	y	0.79	83	22	83	22	y	0.80	139	35	139	35	y	0.0130647894321228	4.04411160944866	up	ENSMUSG00000011958.18	Bnip2	chr9	protein_coding	BCL2/adenovirus E1B interacting protein 2
known_NIR_20330	chr9	69924205	69929719	+	69924205	69926671	3pMXE	ENSMUST00000140305.8	known	0.03	7	220	7	220	y	0.01	3	257	3	257	y	0.02	13	673	13	673	y	0.02	4	240	4	240	y	0.00	0	180	0	180	n	0.00	1	245	1	245	n	0.01	3	197	3	197	y	0.01	3	225	3	225	y	0.0273393097919095	3	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20331	chr9	69924205	69929719	+	69924205;69926797	69926671;69929719	ES	ENSMUST00000118198.8	known	0.02	7	298.0	7	220;376	y	0.01	3	396.0	3	257;535	y	0.02	13	830.5	13	673;988	y	0.01	4	320.0	4	240;400	y	0.00	0	239.0	0	180;298	n	0.00	1	326.5	1	245;408	n	0.01	3	286.0	3	197;375	y	0.01	3	332.5	3	225;440	y	0.0498252627805768	2.44948974278318	up	ENSMUSG00000033543.18	Gtf2a2	chr9	protein_coding	general transcription factor II A, 2
known_NIR_20379	chr9	74860341	74860996	+	74860290	74860996	A5SS	ENSMUST00000216809.2	known	0.34	13	25	13	25	y	0.46	13	15	13	15	y	0.46	6	7	6	7	y	0.60	24	16	24	16	y	0.78	25	7	25	7	y	0.63	19	11	19	11	y	0.59	17	12	17	12	y	0.68	17	8	17	8	y	0.0242646116483749	-3.05313390099013	down	ENSMUSG00000034858.17	Fam214a	chr9	protein_coding	family with sequence similarity 214, member A
known_NIR_20432	chr9	83830968	83834577	+	83807412	83834577	A5SS	ENSMUST00000190637.7	known	0.37	50	86	50	86	y	0.40	44	67	44	67	y	0.32	57	122	57	122	y	0.31	52	116	52	116	y	0.26	40	115	40	115	y	0.22	50	182	50	182	y	0.25	40	117	40	117	y	0.21	45	173	45	173	y	0.00603788173996095	4.72780209780997	up	ENSMUSG00000032263.15	Bckdhb	chr9	protein_coding	branched chain ketoacid dehydrogenase E1, beta polypeptide
known_NIR_20460	chr9	89095309	89097262	+	89093534	89097262	A5SS	ENSMUST00000118887.8	known	0.03	1	35	1	35	n	0.08	3	35	3	35	y	0.02	1	48	1	48	n	0.09	4	41	4	41	y	0.14	6	38	6	38	y	0.15	8	47	8	47	y	0.11	4	33	4	33	y	0.11	4	32	4	32	y	0.0170680799546916	-3.56067296445475	down	ENSMUSG00000066442.18	Mthfs	chr9	protein_coding	5, 10-methenyltetrahydrofolate synthetase
known_NIR_20499	chr9	95921897	95927539	+	95921909	95927539	A5SS	ENSMUST00000034981.14	known	0.60	3	2	3	2	n	0.78	7	2	7	2	n	0.88	15	2	15	2	y	0.80	4	1	4	1	n	0.50	2	2	2	2	n	0.58	7	5	7	5	y	0.57	4	3	4	3	n	0.50	6	6	6	6	y	0.0245664692656509	3.61312199513944	up	ENSMUSG00000032410.14	Xrn1	chr9	protein_coding	5'-3' exoribonuclease 1
known_NIR_20559	chrX	10583943	10584226	+	10583943	10584223	A3SS	ENSMUST00000115524.8	known	0.81	92	21	92	21	y	0.87	39	6	39	6	y	0.84	27	5	27	5	y	0.79	113	30	113	30	y	0.73	86	32	86	32	y	0.72	130	50	130	50	y	0.73	122	44	122	44	y	0.78	133	38	133	38	y	0.00847785041013933	3.95452878006223	up	ENSMUSG00000008035.13	Mid1ip1	chrX	protein_coding	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
known_NIR_20593	chrX	13415600	13418612	-	13415600;13417221	13417186;13418612	ES	ENSMUST00000115438.10	known	0.61	7	4.5	7	9;0	n	0.67	3	1.5	3	2;1	n	0.89	17	2.0	17	4;0	n	0.75	12	4.0	12	7;1	n	0.53	5	4.5	5	9;0	n	0.50	8	8.0	8	13;3	y	0.56	7	5.5	7	8;3	y	0.50	6	6.0	6	9;3	y	0.0380751726559923	3.3342566409976	up	ENSMUSG00000031012.18	Cask	chrX	protein_coding	calcium/calmodulin-dependent serine protein kinase (MAGUK family)
known_NIR_20599	chrX	134643727;134644271	134644191;134645248	+	134643727	134645248	cassetteExon	ENSMUST00000113144.8	known	0.67	4.0	2	2;6	2	y	0.60	1.5	1	1;2	1	n	0.50	2.0	2	0;4	2	n	1.00	1.5	0	1;2	0	n	0.25	1.0	3	0;2	3	n	0.14	0.5	3	0;1	3	n	0.33	2.0	4	4;0	4	n	0.29	2.0	5	4;0	5	n	0.0205653355660595	3.80161216517839	up	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20601	chrX	134643727;134644363	134644191;134645248	+	134643727	134645248	cassetteExon	ENSMUST00000113144.8	known	0.67	4.0	2	2;6	2	y	0.75	3.0	1	1;5	1	n	0.81	8.5	2	0;17	2	n	1.00	4.0	0	1;7	0	n	0.45	2.5	3	0;5	3	n	0.54	3.5	3	0;7	3	n	0.64	7.0	4	4;10	4	y	0.69	11.0	5	4;18	5	y	0.0446318339130717	2.57765201629121	up	ENSMUSG00000043384.16	Gprasp1	chrX	protein_coding	G protein-coupled receptor associated sorting protein 1
known_NIR_20619	chrX	137984467	137985937	-	137984647	137985937	A3SS&ES	ENSMUST00000060824.4	known	1.00	9	0	9	0	n	0.81	29	7	29	7	y	0.73	90	34	90	34	y	0.92	11	1	11	1	n	0.60	6	4	6	4	y	0.67	24	12	24	12	y	0.76	13	4	13	4	y	0.68	15	7	15	7	y	0.0429329470127873	2.76016487877329	up	ENSMUSG00000031271.15	Serpina7	chrX	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
known_NIR_20648	chrX	149335340	149336000	+	149335340	149335955	A3SS	ENSMUST00000066337.13	known	0.09	13	133	13	133	y	0.10	12	114	12	114	y	0.12	9	69	9	69	y	0.08	20	246	20	246	y	0.12	19	145	19	145	y	0.12	33	241	33	241	y	0.15	30	165	30	165	y	0.13	37	255	37	255	y	0.0273107830256495	-2.93141950921103	down	ENSMUSG00000025270.14	Alas2	chrX	protein_coding	aminolevulinic acid synthase 2, erythroid
known_NIR_20715	chrX	168102586	168102972	-	168102586	168103111	A5SS	ENSMUST00000033717.9	known	0.41	7	10	7	10	y	0.33	2	4	2	4	n	0.59	22	15	22	15	y	0.39	7	11	7	11	y	0.62	8	5	8	5	y	0.69	11	5	11	5	y	0.69	9	4	9	4	y	0.47	7	8	7	8	y	0.0495429270816562	-2.45714612591085	down	ENSMUSG00000031352.11	Hccs	chrX	protein_coding	holocytochrome c synthetase
known_NIR_20735	chrX	20564767	20565469	+	20564767	20564848	A3SS	ENSMUST00000115364.8	known	0.04	3	67	3	67	y	0.00	0	70	0	70	n	0.00	0	102	0	102	n	0.00	0	65	0	65	n	0.05	3	57	3	57	y	0.07	6	74	6	74	y	0.05	4	76	4	76	y	0.06	4	59	4	59	y	0.0109042589936611	-4.28438235961612	down	ENSMUSG00000031065.15	Cdk16	chrX	protein_coding	cyclin-dependent kinase 16
known_NIR_20742	chrX	20826258	20827874	-	20826258	20827919	A5SS	ENSMUST00000129899.8	known	0.03	3	110	3	110	y	0.03	4	131	4	131	y	0.05	9	163	9	163	y	0.04	6	135	6	135	y	0.07	7	94	7	94	y	0.05	9	167	9	167	y	0.09	11	114	11	114	y	0.07	11	143	11	143	y	0.0195150653843224	-3.43375853466993	down	ENSMUSG00000001134.10	Uxt	chrX	protein_coding	ubiquitously expressed prefoldin like chaperone
known_NIR_20744	chrX	23127812;23160519	23160454;23181369	-	23127812	23181369	cassetteExon	ENSMUST00000115313.8	known	1.00	0.5	0	0;1	0	n	1.00	0.5	0	0;1	0	n	0.33	1.0	2	1;1	2	n	1.00	1.5	0	1;2	0	n	0.00	0.0	3	0;0	3	n	0.50	1.0	1	1;1	1	n	0.33	2.5	5	2;3	5	y	0.33	1.0	2	0;2	2	n	0.0401863830693765	2.74683544303797	up	ENSMUSG00000036782.14	Klhl13	chrX	protein_coding	kelch-like 13
known_NIR_20767	chrX	41156933	41157234	+	41155679	41157234	A5SS	ENSMUST00000141316.8	known	0.23	5	17	5	17	y	0.12	1	7	1	7	n	0.27	7	19	7	19	y	0.24	5	16	5	16	y	0.11	2	17	2	17	y	0.13	4	26	4	26	y	0.07	1	13	1	13	n	0.14	2	12	2	12	y	0.0439981432534652	2.82702601150583	up	ENSMUSG00000025860.16	Xiap	chrX	protein_coding	X-linked inhibitor of apoptosis
known_NIR_20810	chrX	49659168	49662101	-	49659168;49662018	49661892;49662101	ES	ENSMUST00000204974.3	known	0.42	7	9.5	7	16;3	y	0.48	10	11.0	10	14;8	y	0.44	13	16.5	13	31;2	y	0.36	10	17.5	10	31;4	y	0.19	3	13.0	3	24;2	y	0.36	9	16.0	9	29;3	y	0.16	3	16.0	3	26;6	y	0.33	10	20.0	10	35;5	y	0.0367147881566282	2.95951231400196	up	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
known_NIR_20854	chrX	72825709	72826281	-	72825709	72825904	5pMXE	ENSMUST00000145341.2	known	0.34	37	72	37	72	y	0.29	29	71	29	71	y	0.26	30	86	30	86	y	0.30	49	112	49	112	y	0.26	32	93	32	93	y	0.20	43	175	43	175	y	0.15	22	123	22	123	y	0.18	34	154	34	154	y	0.0150195337430238	3.50823207722812	up	ENSMUSG00000002010.18	Idh3g	chrX	protein_coding	isocitrate dehydrogenase 3 (NAD+), gamma
known_NIR_20855	chrX	72825709	72826281	-	72825709;72825915	72825904;72826281	ES	ENSMUST00000052761.9	known	0.32	37	77.0	37	72;82	y	0.28	29	74.5	29	71;78	y	0.25	30	89.5	30	86;93	y	0.31	49	108.5	49	112;105	y	0.26	32	90.5	32	93;88	y	0.20	43	168.5	43	175;162	y	0.15	22	120.5	22	123;118	y	0.18	34	158.5	34	154;163	y	0.0199454512309312	3.29187053352629	up	ENSMUSG00000002010.18	Idh3g	chrX	protein_coding	isocitrate dehydrogenase 3 (NAD+), gamma
known_NIR_20909	chrX	73332119	73332711	+	73332625	73332711	A5SS	ENSMUST00000156212.8	known	0.91	42	4	42	4	y	0.86	32	5	32	5	y	0.88	15	2	15	2	y	0.83	38	8	38	8	y	0.72	38	15	38	15	y	0.73	37	14	37	14	y	0.74	50	18	50	18	y	0.71	46	19	46	19	y	0.0014994383060681	8.04315284526582	up	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20911	chrX	73332320	73332711	+	73332625	73332711	A5SS	ENSMUST00000156212.8	known	0.83	19	4	19	4	y	0.80	20	5	20	5	y	0.91	21	2	21	2	y	0.73	22	8	22	8	y	0.57	20	15	20	15	y	0.68	30	14	30	14	y	0.54	21	18	21	18	y	0.53	21	19	21	19	y	0.00344538027160116	4.68220855185637	up	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20912	chrX	73332320;73332625	73332535;73332711	+	73332320	73332711	cassetteExon	ENSMUST00000069722.13	known	0.10	2.0	19	0;4	19	n	0.11	2.5	20	0;5	20	n	0.05	1.0	21	0;2	21	n	0.15	4.0	22	0;8	22	n	0.29	8.0	20	1;15	20	n	0.19	7.0	30	0;14	30	n	0.30	9.0	21	0;18	21	n	0.33	10.5	21	2;19	21	y	0.00436386175805	-4.77026392945467	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_20913	chrX	73332320;73332625	73332590;73332711	+	73332320	73332711	cassetteExon	ENSMUST00000069722.13	known	0.10	2.0	19	0;4	19	n	0.11	2.5	20	0;5	20	n	0.05	1.0	21	0;2	21	n	0.19	5.0	22	2;8	22	y	0.29	8.0	20	1;15	20	n	0.19	7.0	30	0;14	30	n	0.30	9.0	21	0;18	21	n	0.32	10.0	21	1;19	21	n	0.00742520715354129	-3.963119945523	down	ENSMUSG00000009995.18	Taz	chrX	protein_coding	tafazzin
known_NIR_21031	chrX	93411091	93423532	+	93410932	93423532	A5SS	ENSMUST00000113896.8	known	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.33	2	4	2	4	n	0.17	1	5	1	5	n	0.20	2	8	2	8	y	0.0115679929609971	-3.58540882341951	down	ENSMUSG00000079508.9	Apoo	chrX	protein_coding	apolipoprotein O
known_NIR_21036	chrX	98511179	98511729	-	98511188	98511729	A3SS	ENSMUST00000113790.8	known	0.00	0	31	0	31	n	0.03	1	38	1	38	n	0.00	0	30	0	30	n	0.06	4	58	4	58	y	0.08	3	35	3	35	y	0.09	4	41	4	41	y	0.17	8	38	8	38	y	0.15	8	45	8	45	y	0.0120766774177492	-3.79094414163938	down	ENSMUSG00000034403.17	Pja1	chrX	protein_coding	praja ring finger ubiquitin ligase 1
novel_NIR_73	chr1	130566970	130568066	-	130566970	130570710	A5SS	ENSMUST00000171642.8	novel	0.14	14	85	14	85	n	0.17	16	80	16	80	y	0.16	43	230	43	230	y	0.10	10	87	10	87	n	0.09	6	62	6	62	n	0.07	7	99	7	99	n	0.03	2	64	2	64	n	0.12	10	73	10	73	n	0.0387654536194261	2.66287609379578	up	ENSMUSG00000026405.15	C4bp	chr1	protein_coding	complement component 4 binding protein
novel_NIR_112	chr1	130986499	130990245	-	130986499	131000077	A5SS	ENSMUST00000188459.4	novel	1.00	10	0	10	0	n	0.50	1	1	1	1	n	0.55	11	9	11	9	n	0.64	7	4	7	4	n	0.00	0	5	0	5	n	0.44	4	5	4	5	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.0118288692775954	3.56783468013196	up	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_117	chr1	130986499;130990278	130990245;131000077	-	130986499	131000077	cassetteExon	ENSMUST00000188459.4	novel	1.00	8.5	0	10;7	0	y	0.60	1.5	1	1;2	1	n	0.53	10.0	9	11;9	9	y	0.50	4.0	4	7;1	4	n	0.00	0.0	5	0;0	5	n	0.33	2.5	5	4;1	5	n	0.00	0.0	1	0;0	1	n	0.00	0.0	3	0;0	3	n	0.00843779049807397	4.03778130045271	up	ENSMUSG00000016528.11	Mapkapk2	chr1	protein_coding	MAP kinase-activated protein kinase 2
novel_NIR_180	chr1	133565194	133566271	-	133565197	133566271	A3SS	ENSMUST00000191896.6	novel	0.16	18	92	18	92	y	0.12	10	73	10	73	n	0.13	18	120	18	120	n	0.14	15	89	15	89	n	0.10	11	96	11	96	n	0.10	14	120	14	120	n	0.09	8	82	8	82	n	0.07	9	113	9	113	n	0.00560097584880052	4.28438235961613	up	ENSMUSG00000102976.7	Zc3h11a	chr1	protein_coding	zinc finger CCCH type containing 11A
novel_NIR_239	chr1	13739339	13742350	+	13739091	13742350	A5SS	ENSMUST00000088542.4	novel	0.29	8	20	8	20	y	0.26	6	17	6	17	y	0.14	4	25	4	25	n	0.18	6	27	6	27	y	0.04	1	27	1	27	n	0.14	7	43	7	43	n	0.10	3	26	3	26	n	0.04	2	47	2	47	n	0.0207039262139655	3.23529411764706	up	ENSMUSG00000067813.4	Xkr9	chr1	protein_coding	X-linked Kx blood group related 9
novel_NIR_284	chr1	140016578	140026702	-	140016578	140028546	A5SS	ENSMUST00000192919.6	novel	0.19	10	42	10	42	n	0.30	18	43	18	43	n	0.26	14	40	14	40	y	0.13	4	26	4	26	n	0.40	18	27	18	27	n	0.38	21	35	21	35	y	0.42	17	23	17	23	y	0.29	14	35	14	35	n	0.0198945381448836	-3.22245031715178	down	ENSMUSG00000026365.16	Cfh	chr1	protein_coding	complement component factor h
novel_NIR_386	chr1	157354025	157356734	+	157352423	157356734	A5SS	ENSMUST00000086130.9	novel	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.67	4	2	4	2	y	0.00	0	1	0	1	n	0.20	1	4	1	4	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0222864813497627	4.09472489562443	up	ENSMUSG00000026589.15	Sec16b	chr1	protein_coding	SEC16 homolog B (S. cerevisiae)
novel_NIR_415	chr1	160864894	160865075	+	160864422	160865075	A5SS	ENSMUST00000159119.8	novel	-	-	-	-	-	-	0.25	1	3	1	3	n	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.0394590987516206	4.88392882177825	up	ENSMUSG00000053332.14	Gas5	chr1	lncRNA	growth arrest specific 5
novel_NIR_447	chr1	163977213	163979008	-	163977213	163979428	A5SS	ENSMUST00000133341.3	novel	0.21	9	33	9	33	y	0.20	9	37	9	37	y	0.00	0	38	0	38	n	0.26	10	28	10	28	y	0.44	24	30	24	30	y	0.42	23	32	23	32	y	0.32	19	41	19	41	y	0.42	25	34	25	34	y	0.019124174469725	-3.66566218213814	down	ENSMUSG00000086593.3	Gm16548	chr1	lncRNA	predicted gene 16548
novel_NIR_537	chr1	171066963;171067152	171067061;171067597	-	171066963	171067597	cassetteExon	ENSMUST00000131286.3	novel	-	-	-	-	-	-	1.00	0.5	0	1;0	0	n	0.76	6.5	2	7;6	2	y	1.00	0.5	0	0;1	0	n	-	-	-	-	-	-	0.00	0.0	1	0;0	1	n	-	-	-	-	-	-	0.00	0.0	2	0;0	2	n	0.00747674039516293	11.5	up	ENSMUSG00000013593.13	Ndufs2	chr1	protein_coding	NADH:ubiquinone oxidoreductase core subunit S2
novel_NIR_668	chr1	184554747	184554932	-	184554747	184559305	A5SS	ENSMUST00000162261.8	novel	0.57	12	9	12	9	y	0.65	20	11	20	11	y	1.00	15	0	15	0	y	0.42	11	15	11	15	y	0.14	2	12	2	12	n	0.17	5	25	5	25	y	0.33	6	12	6	12	y	0.35	11	20	11	20	y	0.0358539489758883	3.07263812945128	up	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_669	chr1	184554747	184554932	-	184554747	184559385	A5SS	ENSMUST00000162866.7	novel	0.63	12	7	12	7	y	0.69	20	9	20	9	y	0.68	15	7	15	7	y	0.69	11	5	11	5	y	0.17	2	10	2	10	y	0.26	5	14	5	14	y	0.43	6	8	6	8	y	0.46	11	13	11	13	y	0.0137960628180831	4.84873484994735	up	ENSMUSG00000073481.10	Mtarc2	chr1	protein_coding	mitochondrial amidoxime reducing component 2
novel_NIR_795	chr1	37065726	37074718	+	37065726	37074789	A3SS	ENSMUST00000117172.9	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	0.75	3	1	3	1	y	1.00	2	0	2	0	y	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00530890186149396	5.84534241979608	up	ENSMUSG00000050122.20	Vwa3b	chr1	protein_coding	von Willebrand factor A domain containing 3B
novel_NIR_825	chr1	39604413	39615789	-	39604413	39616413	A5SS	ENSMUST00000195136.2	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.33	1	2	1	2	n	0.0156470487758018	-4.97014925373134	down	ENSMUSG00000048234.14	Rnf149	chr1	protein_coding	ring finger protein 149
novel_NIR_939	chr1	58752818	58753276	+	58752818	58756419	A3SS	ENSMUST00000097723.3	novel	0.67	2	1	2	1	y	0.75	3	1	3	1	y	0.71	10	4	10	4	y	0.80	4	1	4	1	y	0.64	7	4	7	4	y	0.30	3	7	3	7	y	0.38	3	5	3	5	y	0.33	2	4	2	4	y	0.0200386326655171	3.88175944735273	up	ENSMUSG00000026031.16	Cflar	chr1	protein_coding	CASP8 and FADD-like apoptosis regulator
novel_NIR_972	chr1	60511025	60532697	-	60529480	60532697	3pMXE	ENSMUST00000140485.8	novel	0.06	1	16	1	16	n	0.00	0	11	0	11	n	0.00	0	91	0	91	n	0.08	1	12	1	12	n	0.18	2	9	2	9	y	0.08	2	24	2	24	n	0.18	2	9	2	9	y	0.15	4	23	4	23	y	0.0118374905737804	-3.5913909801043	down	ENSMUSG00000026014.16	Raph1	chr1	protein_coding	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
novel_NIR_1020	chr1	65214527	65225368	-	65214527	65214671	5pMXE	ENSMUST00000149310.8	novel	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	2	2	2	2	y	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.0377495513506237	5	up	ENSMUSG00000025950.17	Idh1	chr1	protein_coding	isocitrate dehydrogenase 1 (NADP+), soluble
novel_NIR_1049	chr1	7190823	7217861	+	7159440	7217861	A5SS	ENSMUST00000182114.8	novel	0.00	0	2	0	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	-	-	-	-	-	-	0.91	10	1	10	1	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	0.0281859153369248	-5.82973928858059	down	ENSMUSG00000051285.18	Pcmtd1	chr1	protein_coding	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
novel_NIR_1121	chr1	75412655	75412798	+	75412655	75412790	A3SS	ENSMUST00000113584.8	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.0377495513506237	5	up	ENSMUSG00000033021.17	Gmppa	chr1	protein_coding	GDP-mannose pyrophosphorylase A
novel_NIR_1331	chr1	92845848	92846565	+	92845848	92846660	A3SS	ENSMUST00000178816.8	novel	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	6	0	6	n	0.36	4	7	4	7	y	0.12	1	7	1	7	n	0.07	1	13	1	13	n	0.00159282664510887	11.0375278706045	up	ENSMUSG00000026269.15	Rnpepl1	chr1	protein_coding	arginyl aminopeptidase (aminopeptidase B)-like 1
novel_NIR_1393	chr1	97644365	97645167	-	97644329	97645167	A3SS	ENSMUST00000112845.8	novel	0.05	2	35	2	35	n	0.06	1	15	1	15	n	0.02	1	47	1	47	n	0.04	1	27	1	27	n	0.00	0	18	0	18	n	0.04	1	22	1	22	n	0.00	0	12	0	12	n	0.00	0	27	0	27	n	0.0493357117702655	2.47152457704546	up	ENSMUSG00000040648.16	Ppip5k2	chr1	protein_coding	diphosphoinositol pentakisphosphate kinase 2
novel_NIR_1425	chr10	111444612;111446678	111446432;111446900	+	111444612	111446900	cassetteExon	ENSMUST00000219137.2	novel	0.21	18.0	66	17;19	66	y	0.25	21.0	63	23;19	63	y	0.12	12.0	86	11;13	86	n	0.27	29.5	78	27;32	78	y	0.37	28.0	47	20;36	47	y	0.32	41.5	88	42;41	88	y	0.40	38.5	57	40;37	57	y	0.32	36.5	77	33;40	77	y	0.0158773422159266	-3.619815474144	down	ENSMUSG00000112249.2	Gm30262	chr10	lncRNA	predicted gene, 30262
novel_NIR_1547	chr10	127836540	127843314	-	127836545	127843314	A3SS	ENSMUST00000219447.2	novel	1.00	5	0	5	0	y	1.00	12	0	12	0	y	1.00	1	0	1	0	n	1.00	12	0	12	0	y	0.80	8	2	8	2	y	0.76	13	4	13	4	y	0.50	8	8	8	8	y	0.80	28	7	28	7	y	0.0290830177479892	3.94277244403662	up	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1548	chr10	127836545	127843298	-	127836545	127843314	A5SS	ENSMUST00000219447.2	novel	1.00	3	0	3	0	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	1	4	1	4	n	0.00	0	8	0	8	n	0.42	5	7	5	7	y	0.00349140603939534	8.43945726351779	up	ENSMUSG00000025396.8	Hsd17b6	chr10	protein_coding	hydroxysteroid (17-beta) dehydrogenase 6
novel_NIR_1649	chr10	128807196	128819588	+	128807196	128813472	3pMXE	ENSMUST00000181142.2	novel	0.52	28	26	28	26	y	0.46	26	30	26	30	y	0.44	4	5	4	5	y	0.49	41	43	41	43	y	0.60	50	33	50	33	y	0.53	91	81	91	81	y	0.53	65	58	65	58	y	0.51	90	88	90	88	y	0.0494195726462333	-2.4641136920656	down	ENSMUSG00000097691.2	9030616G12Rik	chr10	lncRNA	RIKEN cDNA 9030616G12 gene
novel_NIR_1773	chr10	4636956	4662313	+	4562155	4662313	A5SS	ENSMUST00000067086.14	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	1.00	4	0	4	0	y	1.00	1	0	1	0	n	0.80	4	1	4	1	y	0.000318343440071157	-19	down	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1774	chr10	4636956	4662313	+	4619332	4662313	A5SS	ENSMUST00000149195.8	novel	0.00	0	5	0	5	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	6	0	6	n	0.33	2	4	2	4	n	0.50	4	4	4	4	y	0.33	1	2	1	2	n	0.50	4	4	4	4	y	0.00347103872683626	-8.45648335460099	down	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1775	chr10	4636956	4662313	+	4660294	4662313	5pMXE	ENSMUST00000105588.8	novel	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.40	2	3	2	3	y	0.57	4	3	4	3	y	0.50	1	1	1	1	n	0.44	4	5	4	5	y	0.00100851395444787	-12.8869839405293	down	ENSMUSG00000019768.17	Esr1	chr10	protein_coding	estrogen receptor 1 (alpha)
novel_NIR_1810	chr10	59186385	59187905	+	59186422	59187905	A5SS	ENSMUST00000009789.15	novel	0.00	0	24	0	24	n	0.00	0	16	0	16	n	0.15	9	51	9	51	y	0.00	0	11	0	11	n	0.18	2	9	2	9	y	0.10	2	19	2	19	n	0.17	2	10	2	10	y	0.18	2	9	2	9	y	0.0408088906765185	-2.84493880689696	down	ENSMUSG00000019916.15	P4ha1	chr10	protein_coding	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
novel_NIR_1831	chr10	61532521	61534028	+	61532521	61535222	A3SS	ENSMUST00000219768.2	novel	0.67	2	1	2	1	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.50	2	2	2	2	y	1.00	1	0	1	0	n	0.0199662583148904	-3.20075278442909	down	ENSMUSG00000020087.6	Tysnd1	chr10	protein_coding	trypsin domain containing 1
novel_NIR_1993	chr10	78187545	78187835	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.50	1	1	1	1	n	0.00598625569770709	7	up	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_1995	chr10	78187545	78187867	-	78187545	78187637	5pMXE	ENSMUST00000105390.8	novel	1.00	5	0	5	0	y	1.00	2	0	2	0	y	1.00	5	0	5	0	y	1.00	8	0	8	0	y	0.83	5	1	5	1	y	0.94	16	1	16	1	y	0.83	5	1	5	1	y	0.88	7	1	7	1	y	0.0156216513909146	4.97309836189404	up	ENSMUSG00000001211.16	Agpat3	chr10	protein_coding	1-acylglycerol-3-phosphate O-acyltransferase 3
novel_NIR_2031	chr10	79963934	79965744	+	79963934	79964225	A3SS&ES	ENSMUST00000144883.8	novel	0.46	6	7	6	7	y	0.47	8	9	8	9	y	0.40	2	3	2	3	y	0.00	0	5	0	5	n	0.78	7	2	7	2	y	0.73	8	3	8	3	y	0.64	7	4	7	4	y	0.64	9	5	9	5	y	0.0416101461143699	-3.1150912710075	down	ENSMUSG00000003068.18	Stk11	chr10	protein_coding	serine/threonine kinase 11
novel_NIR_2037	chr10	79989967	79990168	+	79989967	79990165	A3SS	ENSMUST00000099492.10	novel	0.46	24	28	24	28	y	0.38	30	50	30	50	y	0.31	30	66	30	66	y	0.38	25	41	25	41	y	0.26	22	62	22	62	y	0.32	29	62	29	62	y	0.33	19	39	19	39	y	0.23	17	57	17	57	y	0.0484743006049454	2.50529013878728	up	ENSMUSG00000035621.14	Midn	chr10	protein_coding	midnolin
novel_NIR_2097	chr10	80702494	80703237	+	80702494	80703234	A3SS	ENSMUST00000035597.10	novel	0.33	4	8	4	8	y	0.18	2	9	2	9	y	0.10	1	9	1	9	n	0.11	1	8	1	8	n	0.00	0	9	0	9	n	0.00	0	12	0	12	n	0.00	0	16	0	16	n	0.07	1	14	1	14	n	0.0490069119957367	2.90785781829068	up	ENSMUSG00000035206.11	Sppl2b	chr10	protein_coding	signal peptide peptidase like 2B
novel_NIR_2541	chr11	113583328	113590032	+	113583328	113585338	3pMXE	ENSMUST00000042227.15	novel	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.08	1	11	1	11	n	0.09	1	10	1	10	n	0.08	1	12	1	12	n	0.20	2	8	2	8	y	0.0310528188122684	-3.84460945972542	down	ENSMUSG00000041623.18	D11Wsu47e	chr11	protein_coding	DNA segment, Chr 11, Wayne State University 47, expressed
novel_NIR_2577	chr11	115167008	115168091	-	115167008	115167635	5pMXE	ENSMUST00000021078.3	novel	0.54	19	16	19	16	y	0.53	24	21	24	21	y	0.58	18	13	18	13	y	0.28	10	26	10	26	y	0.32	13	28	13	28	y	0.24	13	41	13	41	y	0.15	8	44	8	44	y	0.33	17	35	17	35	y	0.0393250456461384	2.77628388127473	up	ENSMUSG00000018861.9	Fdxr	chr11	protein_coding	ferredoxin reductase
novel_NIR_2605	chr11	115513674	115514698	-	115514418	115514698	A3SS&ES	ENSMUST00000144083.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0377495513506237	5	up	ENSMUSG00000020744.14	Slc25a19	chr11	protein_coding	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
novel_NIR_2806	chr11	121189681	121197594	+	121189681	121190410	3pMXE	ENSMUST00000151492.2	novel	0.24	4	13	4	13	y	0.27	3	8	3	8	y	0.24	12	37	12	37	y	0.19	4	17	4	17	y	0.31	4	9	4	9	y	0.37	16	27	16	27	y	0.29	4	10	4	10	y	0.32	6	13	6	13	y	0.0103121577859756	-3.68251077511745	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2807	chr11	121189681	121197594	+	121189681;121190619	121190410;121197594	ES	ENSMUST00000106113.2	novel	0.23	4	13.5	4	13;14	y	0.29	3	7.5	3	8;7	y	0.30	12	27.5	12	37;18	y	0.22	4	14.0	4	17;11	y	0.33	4	8.0	4	9;7	y	0.42	16	22.0	16	27;17	y	0.30	4	9.5	4	10;9	y	0.33	6	12.0	6	13;11	y	0.044313828336488	-2.57260968875712	down	ENSMUSG00000039275.10	Foxk2	chr11	protein_coding	forkhead box K2
novel_NIR_2824	chr11	16833613	16839913	+	16833613	16834254	3pMXE	ENSMUST00000125984.2	novel	0.50	2	2	2	2	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.33	1	2	1	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.0262641307324393	6.04825556246074	up	ENSMUSG00000020122.17	Egfr	chr11	protein_coding	epidermal growth factor receptor
novel_NIR_2866	chr11	23445064	23446787	-	23445064	23446766	A5SS	ENSMUST00000147157.8	novel	1.00	5	0	5	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	5	0	5	0	y	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	5	0	5	n	0.33	1	2	1	2	n	0.0255536112946458	6.13513513513513	up	ENSMUSG00000020288.14	Ahsa2	chr11	protein_coding	AHA1, activator of heat shock protein ATPase 2
novel_NIR_2966	chr11	4086797	4087174	+	4086797	4087309	A3SS	ENSMUST00000145705.8	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	2	0	2	0	y	0.0387968213685622	-4.92800147686227	down	ENSMUSG00000003581.15	Rnf215	chr11	protein_coding	ring finger protein 215
novel_NIR_3077	chr11	51158158	51161364	+	51158158	51158992	A3SS&ES	ENSMUST00000130641.8	novel	0.35	7	13	7	13	y	0.12	1	7	1	7	n	0.25	9	27	9	27	y	0.30	3	7	3	7	y	0.50	8	8	8	8	y	0.59	10	7	10	7	y	0.40	6	9	6	9	y	0.42	8	11	8	11	y	0.0151188066588898	-3.38735399228495	down	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3079	chr11	51158158	51161364	+	51158158;51159058	51158992;51161364	ES	ENSMUST00000126131.8	novel	0.45	7	8.5	7	13;4	y	0.18	1	4.5	1	7;2	n	0.34	9	17.5	9	27;8	y	0.38	3	5.0	3	7;3	y	0.64	8	4.5	8	8;1	y	0.69	10	4.5	10	7;2	y	0.57	6	4.5	6	9;0	y	0.53	8	7.0	8	11;3	y	0.0101651263175838	-4.004580328994	down	ENSMUSG00000020385.17	Clk4	chr11	protein_coding	CDC like kinase 4
novel_NIR_3212	chr11	59344471	59344635	+	59344471	59344654	A3SS	ENSMUST00000045279.13	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	1	1	1	1	n	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.67	2	1	2	1	y	0.0221457884124725	4.37141326972466	up	ENSMUSG00000036819.15	Jmjd4	chr11	protein_coding	jumonji domain containing 4
novel_NIR_3313	chr11	6216967	6217418	-	6216917	6217418	A3SS	ENSMUST00000151446.2	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	1	2	1	2	n	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.33	1	2	1	2	n	0.83	5	1	5	1	y	0.0458671856677077	-3.06350430945413	down	ENSMUSG00000004393.11	Ddx56	chr11	protein_coding	DEAD box helicase 56
novel_NIR_3415	chr11	70126290	70126823	-	70126294	70126823	A3SS	ENSMUST00000108575.9	novel	0.38	3	5	3	5	y	0.21	3	11	3	11	y	0.43	10	13	10	13	y	0.40	4	6	4	6	y	0.00	0	3	0	3	n	0.00	0	6	0	6	n	0.00	0	4	0	4	n	0.33	2	4	2	4	y	0.0373027088252733	2.83363920624348	up	ENSMUSG00000020831.19	0610010K14Rik	chr11	protein_coding	RIKEN cDNA 0610010K14 gene
novel_NIR_3756	chr11	94174411	94175580	+	94174411	94175482	A3SS	ENSMUST00000208510.3	novel	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000094091.4	Gm21885	chr11	protein_coding	predicted gene, 21885
novel_NIR_3829	chr11	98136495	98154296	+	98136495	98140536	3pMXE	ENSMUST00000107539.8	novel	0.43	3	4	3	4	y	0.33	2	4	2	4	y	0.38	5	8	5	8	y	0.50	5	5	5	5	y	0.25	1	3	1	3	n	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.11	1	8	1	8	n	0.0105674555650311	3.73582138242076	up	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3830	chr11	98136495	98154296	+	98136495;98140926	98140536;98154296	ES	ENSMUST00000147441.8	novel	0.32	3	6.5	3	4;9	y	0.29	2	5.0	2	4;6	y	0.36	5	9.0	5	8;10	y	0.37	5	8.5	5	5;12	y	0.22	1	3.5	1	3;4	n	0.07	1	13.0	1	7;19	n	0.25	2	6.0	2	5;7	y	0.12	1	7.0	1	8;6	n	0.0199162275020614	3.69507013561131	up	ENSMUSG00000003119.15	Cdk12	chr11	protein_coding	cyclin-dependent kinase 12
novel_NIR_3844	chr11	98932954	98939052	+	98935738	98939052	5pMXE	ENSMUST00000123946.2	novel	0.64	9	5	9	5	y	0.86	6	1	6	1	y	0.64	9	5	9	5	y	1.00	4	0	4	0	y	0.00	0	2	0	2	n	0.60	6	4	6	4	y	0.38	5	8	5	8	y	0.00	0	6	0	6	n	0.0268654477664863	3.12551503293546	up	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3845	chr11	98932954	98939052	+	98938229	98939052	5pMXE	ENSMUST00000140772.2	novel	0.69	9	4	9	4	y	0.75	6	2	6	2	y	0.39	9	14	9	14	y	0.44	4	5	4	5	y	0.00	0	8	0	8	n	0.30	6	14	6	14	y	0.29	5	12	5	12	y	0.00	0	4	0	4	n	0.0145560624252012	3.39966756576868	up	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3850	chr11	98933490	98939052	+	98934450	98939052	5pMXE	ENSMUST00000130530.8	novel	0.02	1	63	1	63	n	0.11	6	49	6	49	n	0.00	0	51	0	51	n	0.07	5	64	5	64	n	0.21	11	42	11	42	y	0.21	14	54	14	54	y	0.12	7	53	7	53	n	0.12	11	83	11	83	n	0.0186572892378016	-3.19979838074516	down	ENSMUSG00000017493.13	Igfbp4	chr11	protein_coding	insulin-like growth factor binding protein 4
novel_NIR_3943	chr12	103824315	103829450	-	103824315	103825260	A5SS&ES	ENSMUST00000124717.2	novel	0.32	22	46	22	46	y	0.35	20	37	20	37	y	0.22	15	53	15	53	y	0.28	23	58	23	58	y	0.21	13	48	13	48	y	0.13	11	75	11	75	n	0.21	12	45	12	45	y	0.19	24	100	24	100	y	0.0230709514170644	3.17287734323417	up	ENSMUSG00000066366.15	Serpina1a	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 1A
novel_NIR_3971	chr12	103954745	103956148	-	103954748	103956148	A3SS	ENSMUST00000176246.3	novel	1.00	2	0	2	0	y	0.50	1	1	1	1	n	0.18	2	9	2	9	y	1.00	1	0	1	0	n	0.00	0	4	0	4	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.0448353843926757	3.32652001571534	up	ENSMUSG00000063232.17	Serpina11	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11
novel_NIR_4009	chr12	104373050	104374913	+	104373054	104374913	A5SS	ENSMUST00000021506.6	novel	0.27	1240	3337	1240	3337	y	0.28	1195	3043	1195	3043	y	0.30	7021	16567	7021	16567	y	0.30	1659	3903	1659	3903	y	0.26	601	1700	601	1700	y	0.26	914	2607	914	2607	y	0.26	614	1713	614	1713	y	0.26	889	2492	889	2492	y	0.0350815147154819	3.66666666666667	up	ENSMUSG00000021091.9	Serpina3n	chr12	protein_coding	serine (or cysteine) peptidase inhibitor, clade A, member 3N
novel_NIR_4063	chr12	110760807	110769839	+	110760807;110763441	110763377;110769839	ES	ENSMUST00000194118.2	novel	0.69	9	4.0	9	3;5	y	0.52	6	5.5	6	2;9	y	0.74	7	2.5	7	2;3	y	0.38	3	5.0	3	5;5	y	0.50	6	6.0	6	5;7	y	0.00	0	5.0	0	5;5	n	0.30	3	7.0	3	6;8	y	0.12	1	7.0	1	5;9	n	0.0446501750472857	2.57960400065175	up	ENSMUSG00000037957.15	Wdr20	chr12	protein_coding	WD repeat domain 20
novel_NIR_4103	chr12	111696546	111700103	+	111696546	111717621	A3SS	ENSMUST00000163220.10	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.50	2	2	2	2	y	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.0377495513506237	-5	down	ENSMUSG00000037787.15	Coa8	chr12	protein_coding	cytochrome c oxidase assembly factor 8
novel_NIR_4128	chr12	111929787	111933017	-	111929787	111933128	A5SS	ENSMUST00000223191.2	novel	0.33	1	2	1	2	n	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	3	0	3	0	y	0.62	5	3	5	3	y	0.33	1	2	1	2	n	0.88	7	1	7	1	y	0.0235093514635159	-3.22982803375902	down	ENSMUSG00000021290.7	Atp5mpl	chr12	protein_coding	ATP synthase membrane subunit 6.8PL
novel_NIR_4153	chr12	112564071	112566428	+	112555969	112566428	A5SS	ENSMUST00000220786.2	novel	0.50	1	1	1	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.33	1	2	1	2	n	1.00	3	0	3	0	y	1.00	1	0	1	0	n	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.0394597897898668	-3.04308952761586	down	ENSMUSG00000037679.10	Inf2	chr12	protein_coding	inverted formin, FH2 and WH2 domain containing
novel_NIR_4367	chr12	52551170	52562862	+	52551170	52589275	A3SS	ENSMUST00000217820.2	novel	1.00	4	0	4	0	y	0.83	5	1	5	1	y	0.88	23	3	23	3	y	1.00	16	0	16	0	y	0.43	3	4	3	4	y	0.67	10	5	10	5	y	0.70	7	3	7	3	y	0.68	15	7	15	7	y	0.00925745705729318	4.00119029908898	up	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4370	chr12	52551170	52589272	+	52551170	52589275	A3SS	ENSMUST00000217820.2	novel	1.00	3	0	3	0	y	0.80	4	1	4	1	y	0.70	7	3	7	3	y	1.00	11	0	11	0	y	0.33	2	4	2	4	y	0.00	0	5	0	5	n	0.25	1	3	1	3	n	0.50	7	7	7	7	y	0.00418955457458174	4.71826636661555	up	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4371	chr12	52566750	52589275	+	52551170	52589275	A5SS	ENSMUST00000217820.2	novel	1.00	7	0	7	0	y	0.88	7	1	7	1	y	0.84	16	3	16	3	y	1.00	10	0	10	0	y	0.00	0	4	0	4	n	0.64	9	5	9	5	y	0.50	3	3	3	3	y	0.00	0	7	0	7	n	0.0271469121592171	3.7495141898779	up	ENSMUSG00000035133.10	Arhgap5	chr12	protein_coding	Rho GTPase activating protein 5
novel_NIR_4374	chr12	54697456	54703119	-	54697456	54703150	A5SS	ENSMUST00000218147.2	novel	0.50	2	2	2	2	y	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.0474206555843196	2.82842712474619	up	ENSMUSG00000044408.8	Sptssa	chr12	protein_coding	serine palmitoyltransferase, small subunit A
novel_NIR_4554	chr12	76624050	76624453	+	76624050	76624449	A3SS	ENSMUST00000075249.6	novel	0.02	1	44	1	44	n	0.09	3	32	3	32	n	0.03	1	33	1	33	n	0.00	0	40	0	40	n	0.11	4	34	4	34	n	0.07	4	52	4	52	n	0.16	7	38	7	38	y	0.11	7	54	7	54	n	0.0274405712410024	-2.89918054170676	down	ENSMUSG00000052609.10	Plekhg3	chr12	protein_coding	pleckstrin homology domain containing, family G (with RhoGef domain) member 3
novel_NIR_4837	chr13	120237525	120237621	-	120237525	120237628	A5SS	ENSMUST00000178271.3	novel	0.00	0	18	0	18	n	0.00	0	19	0	19	n	0.09	4	39	4	39	n	0.13	2	13	2	13	n	0.12	1	7	1	7	n	0.30	7	16	7	16	y	0.22	2	7	2	7	y	0.17	2	10	2	10	y	0.0273128745613837	-2.92212917590699	down	ENSMUSG00000094870.9	Zfp131	chr13	protein_coding	zinc finger protein 131
novel_NIR_4846	chr13	12619350	12619876	+	12619350	12624457	A3SS	ENSMUST00000220811.2	novel	0.80	4	1	4	1	y	0.71	5	2	5	2	y	1.00	4	0	4	0	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.60	3	2	3	2	y	0.00	0	6	0	6	n	0.50	2	2	2	2	y	0.0318778057297703	3.09330565800425	up	ENSMUSG00000057069.8	Ero1b	chr13	protein_coding	endoplasmic reticulum oxidoreductase 1 beta
novel_NIR_4912	chr13	24197443	24208306	-	24197443;24206619	24206479;24208306	ES	ENSMUST00000072889.12	novel	0.04	1	27.0	1	15;39	n	0.04	1	27.5	1	25;30	n	0.00	0	26.5	0	21;32	n	0.00	0	31.0	0	29;33	n	0.10	4	35.0	4	32;38	n	0.11	4	32.5	4	34;31	n	0.09	4	43.0	4	32;54	n	0.09	2	20.5	2	21;20	n	0.00343705405321158	-6.2	down	ENSMUSG00000021338.18	Carmil1	chr13	protein_coding	capping protein regulator and myosin 1 linker 1
novel_NIR_5172	chr13	55359656	55361017	+	55359920	55361017	5pMXE	ENSMUST00000225194.2	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.75	3	1	3	1	y	0.60	3	2	3	2	y	0.044930247819585	-4.55721536911849	down	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5173	chr13	55359656	55361017	+	55360430	55361017	5pMXE	ENSMUST00000225169.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.60	3	2	3	2	y	0.0444669140940908	-4.58257569495584	down	ENSMUSG00000021488.9	Nsd1	chr13	protein_coding	nuclear receptor-binding SET-domain protein 1
novel_NIR_5239	chr13	63023125	63027195	-	63023125	63035465	A5SS	ENSMUST00000134814.2	novel	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.70	16	7	16	7	y	0.60	6	4	6	4	y	1.00	2	0	2	0	y	0.80	20	5	20	5	n	0.83	5	1	5	1	y	0.78	14	4	14	4	y	0.00864219454863616	-3.9010001395172	down	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5246	chr13	63023125;63027445	63027195;63035465	-	63023125	63035465	cassetteExon	ENSMUST00000134814.2	novel	0.43	1.5	2	3;0	2	n	0.33	1.0	2	2;0	2	n	0.53	8.0	7	16;0	7	n	0.43	3.0	4	6;0	4	n	1.00	1.0	0	2;0	0	n	0.69	11.0	5	20;2	5	y	0.71	2.5	1	5;0	1	n	0.64	7.0	4	14;0	4	n	0.0187208652091956	-3.62586283355098	down	ENSMUSG00000069805.11	Fbp1	chr13	protein_coding	fructose bisphosphatase 1
novel_NIR_5308	chr13	67078287	67078389	-	67078287	67079670	A5SS	ENSMUST00000172597.8	novel	0.50	2	2	2	2	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00788678095453256	-6.35399419782315	down	ENSMUSG00000021519.12	Mterf3	chr13	protein_coding	mitochondrial transcription termination factor 3
novel_NIR_5318	chr13	67321239	67324512	+	67321372	67324512	5pMXE	ENSMUST00000225334.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.00	0	1	0	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000058900.6	Rsl1	chr13	protein_coding	regulator of sex limited protein 1
novel_NIR_5348	chr13	73476836	73478979	+	73476739	73478979	A5SS	ENSMUST00000221730.2	novel	0.00	0	2	0	2	n	0.40	2	3	2	3	y	-	-	-	-	-	-	0.00	0	7	0	7	n	0.80	4	1	4	1	y	1.00	3	0	3	0	y	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.0257123770829802	-3.13967449270529	down	ENSMUSG00000021607.10	Mrpl36	chr13	protein_coding	mitochondrial ribosomal protein L36
novel_NIR_5354	chr13	73912009	73912264	+	73912009	73932638	A3SS	ENSMUST00000017900.9	novel	0.07	3	37	3	37	n	0.12	3	23	3	23	n	0.00	0	33	0	33	n	0.04	2	54	2	54	n	0.33	13	26	13	26	y	0.27	20	53	20	53	y	0.18	6	27	6	27	y	0.23	9	30	9	30	y	0.00339823068271858	-4.8066409756039	down	ENSMUSG00000017756.10	Slc12a7	chr13	protein_coding	solute carrier family 12, member 7
novel_NIR_5376	chr13	74788056;74789701	74789660;74794290	+	74788056	74794290	cassetteExon	ENSMUST00000221526.2	novel	1.00	1.0	0	0;2	0	n	1.00	0.5	0	0;1	0	n	1.00	1.5	0	0;3	0	n	0.71	5.0	2	2;8	2	y	0.20	0.5	2	0;1	2	n	0.54	3.5	3	1;6	3	n	0.08	0.5	6	0;1	6	n	0.56	2.5	2	1;4	2	n	0.00943248897279008	4.13117969941959	up	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5378	chr13	74789701	74794290	+	74788056	74794290	A5SS	ENSMUST00000221526.2	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	3	0	3	0	y	0.80	8	2	8	2	n	0.33	1	2	1	2	n	0.67	6	3	6	3	n	0.14	1	6	1	6	n	0.67	4	2	4	2	n	0.0256165499111419	3.53799909163881	up	ENSMUSG00000021583.8	Erap1	chr13	protein_coding	endoplasmic reticulum aminopeptidase 1
novel_NIR_5432	chr13	92985583;92986031	92985933;92986798	+	92985583	92986798	cassetteExon	ENSMUST00000076169.4	novel	0.33	1.0	2	1;1	2	n	0.00	0.0	4	0;0	4	n	0.25	1.0	3	2;0	3	n	0.27	1.5	4	1;2	4	n	0.54	3.5	3	3;4	3	y	0.30	3.0	7	2;4	7	y	0.60	1.5	1	0;3	1	n	0.44	4.0	5	3;5	5	y	0.0396070929389564	-2.62724328658816	down	ENSMUSG00000021704.9	Mtx3	chr13	protein_coding	metaxin 3
novel_NIR_5492	chr14	103384468	103385944	-	103384465	103385944	A3SS	ENSMUST00000161008.8	novel	0.67	8	4	8	4	y	0.60	3	2	3	2	y	0.20	1	4	1	4	n	0.68	13	6	13	6	y	1.00	3	0	3	0	y	0.93	13	1	13	1	y	1.00	11	0	11	0	y	0.77	20	6	20	6	y	0.0338916170904715	-3.07166656539058	down	ENSMUSG00000033004.17	Mycbp2	chr14	protein_coding	MYC binding protein 2, E3 ubiquitin protein ligase
novel_NIR_5569	chr14	14546318	14547060	-	14546318	14547027	A5SS	ENSMUST00000052678.9	novel	0.79	27	7	27	7	y	0.77	10	3	10	3	y	0.85	40	7	40	7	y	0.82	31	7	31	7	y	0.90	18	2	18	2	y	0.87	40	6	40	6	y	0.84	27	5	27	5	y	0.90	53	6	53	6	y	0.0223923700859993	-3.0920827300957	down	ENSMUSG00000025278.10	Flnb	chr14	protein_coding	filamin, beta
novel_NIR_5592	chr14	20738681	20752980	-	20738681;20738907	20738833;20752980	ES	ENSMUST00000180987.2	novel	0.33	1	2.0	1	2;2	n	0.57	2	1.5	2	2;1	y	0.50	1	1.0	1	2;0	n	-	-	-	-	-	-	0.00	0	1.0	0	2;0	n	0.00	0	1.0	0	2;0	n	0.00	0	2.0	0	1;3	n	-	-	-	-	-	-	0.022531298757377	6.54892377614983	up	ENSMUSG00000097577.3	6230400D17Rik	chr14	lncRNA	RIKEN cDNA 6230400D17 gene
novel_NIR_5924	chr14	51339248	51342264	+	51328710	51342264	A5SS	ENSMUST00000022428.13	novel	0.09	83	813	83	813	n	0.09	85	867	85	867	n	0.03	32	976	32	976	n	0.10	98	859	98	859	n	0.12	90	681	90	681	n	0.13	146	952	146	952	n	0.18	119	535	119	535	y	0.11	105	829	105	829	n	0.0419789532840427	-2.57685222005779	down	ENSMUSG00000021876.16	Rnase4	chr14	protein_coding	ribonuclease, RNase A family 4
novel_NIR_5940	chr14	52149003	52149753	-	52149003	52149412	5pMXE	ENSMUST00000226528.2	novel	0.37	22	37	22	37	y	0.31	11	25	11	25	y	0.00	0	3	0	3	n	0.20	15	61	15	61	y	0.52	33	31	33	31	y	0.51	41	39	41	39	y	0.44	28	36	28	36	y	0.55	50	41	50	41	y	0.0346230493976981	-3.36851822281878	down	ENSMUSG00000004558.16	Ndrg2	chr14	protein_coding	N-myc downstream regulated gene 2
novel_NIR_6011	chr14	55800956	55801531	+	55800956	55801510	A3SS	ENSMUST00000117701.8	novel	0.83	5	1	5	1	y	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.50	1	1	1	1	n	0.67	4	2	4	2	y	1.00	10	0	10	0	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.0283794443488709	-2.87128208118174	down	ENSMUSG00000022214.16	Dcaf11	chr14	protein_coding	DDB1 and CUL4 associated factor 11
novel_NIR_6027	chr14	55875650	55877842	-	55875962	55877842	3pMXE	ENSMUST00000130167.8	novel	0.83	5	1	5	1	y	0.77	10	3	10	3	y	0.83	15	3	15	3	y	1.00	2	0	2	0	y	0.73	8	3	8	3	y	0.75	6	2	6	2	y	0.64	7	4	7	4	y	0.50	1	1	1	1	n	0.0370839459664222	2.68266832157521	up	ENSMUSG00000002320.16	Tm9sf1	chr14	protein_coding	transmembrane 9 superfamily member 1
novel_NIR_6072	chr14	56912232	56913979	+	56912196	56913979	A5SS	ENSMUST00000116468.2	novel	0.10	3	28	3	28	n	0.10	2	19	2	19	n	0.20	9	35	9	35	y	0.17	5	24	5	24	y	0.43	9	12	9	12	y	0.21	7	26	7	26	y	0.24	6	19	6	19	y	0.36	12	21	12	21	y	0.0388294605660561	-2.92041361901754	down	ENSMUSG00000079184.11	Mphosph8	chr14	protein_coding	M-phase phosphoprotein 8
novel_NIR_6095	chr14	58036054	58038017	+	58036054	58042215	A3SS	ENSMUST00000111269.2	novel	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.25	1	3	1	3	n	0.50	1	1	1	1	n	1.00	3	0	3	0	y	0.0489939621996472	-2.65657670976001	down	ENSMUSG00000021963.18	Sap18	chr14	protein_coding	Sin3-associated polypeptide 18
novel_NIR_6165	chr14	61841255	61862669	-	61841255	61869886	A5SS	ENSMUST00000182768.8	novel	0.05	1	19	1	19	n	0.04	1	23	1	23	n	0.00	0	3	0	3	n	0.06	1	17	1	17	n	0.06	1	15	1	15	n	0.12	3	23	3	23	n	0.17	2	10	2	10	y	0.12	3	23	3	23	n	0.0290394227512903	-3.06974150107718	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6166	chr14	61841255	61862669	-	61841255	61872974	A5SS	ENSMUST00000183054.8	novel	0.25	1	3	1	3	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.50	3	3	3	3	y	0.40	2	3	2	3	y	0.43	3	4	3	4	y	0.00482184455642774	-4.92951879203187	down	ENSMUSG00000097589.10	Dleu2	chr14	lncRNA	deleted in lymphocytic leukemia, 2
novel_NIR_6275	chr14	70556389;70585971	70585772;70588729	-	70556389	70588729	cassetteExon	ENSMUST00000146453.2	novel	0.16	4.0	21	5;3	21	y	0.19	2.5	11	2;3	11	y	0.09	11.5	110	13;10	110	n	0.15	6.5	37	3;10	37	y	0.03	0.5	17	0;1	17	n	0.09	3.0	31	6;0	31	n	0.00	0.0	15	0;0	15	n	0.07	3.0	37	3;3	37	n	0.0138617849034129	3.43840953036752	up	ENSMUSG00000022094.16	Slc39a14	chr14	protein_coding	solute carrier family 39 (zinc transporter), member 14
novel_NIR_6301	chr14	75368644	75414255	+	75368644	75435517	A3SS	ENSMUST00000143539.8	novel	0.00	0	3	0	3	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.38	3	5	3	5	y	0.00601253957392704	-5.81488890911977	down	ENSMUSG00000021998.17	Lcp1	chr14	protein_coding	lymphocyte cytosolic protein 1
novel_NIR_6366	chr14	87694554	87696197	+	87694554	87696193	A3SS	ENSMUST00000169504.8	novel	0.17	2	10	2	10	y	0.14	1	6	1	6	n	0.12	1	7	1	7	n	0.20	2	8	2	8	y	0.00	0	2	0	2	n	0.00	0	10	0	10	n	0.06	1	16	1	16	n	0.06	1	17	1	17	n	0.00205846742614128	5.17826544218146	up	ENSMUSG00000022019.17	Tdrd3	chr14	protein_coding	tudor domain containing 3
novel_NIR_6510	chr15	10373954	10376253	+	10373954	10374082	3pMXE	ENSMUST00000110540.8	novel	0.69	36	16	36	16	y	0.64	27	15	27	15	y	0.80	83	21	83	21	y	0.78	54	15	54	15	y	0.57	35	26	35	26	y	0.65	40	22	40	22	y	0.58	29	21	29	21	y	0.49	47	48	47	48	y	0.0215891473476662	3.1025865669915	up	ENSMUSG00000089678.9	Agxt2	chr15	protein_coding	alanine-glyoxylate aminotransferase 2
novel_NIR_6569	chr15	3300534	3301492	+	3300534	3302237	A3SS	ENSMUST00000160311.3	novel	0.76	13	4	13	4	y	0.68	15	7	15	7	y	0.52	13	12	13	12	y	0.67	22	11	22	11	y	0.42	10	14	10	14	y	0.56	18	14	18	14	y	0.43	6	8	6	8	y	0.44	20	25	20	25	y	0.0213903263218051	3.25944494871294	up	ENSMUSG00000064373.14	Selenop	chr15	protein_coding	selenoprotein P
novel_NIR_6620	chr15	3487490	3611545	-	3487490	3611740	A5SS	ENSMUST00000161770.2	novel	0.08	4	48	4	48	n	0.14	5	30	5	30	n	0.09	2	20	2	20	n	0.08	5	61	5	61	n	0.28	16	41	16	41	y	0.22	15	54	15	54	y	0.18	8	36	8	36	y	0.17	10	48	10	48	y	0.0113252112454549	-3.99371365319531	down	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6623	chr15	3487490	3611627	-	3487490	3611740	A5SS	ENSMUST00000161770.2	novel	0.04	2	48	2	48	n	0.06	2	30	2	30	n	0.00	0	20	0	20	n	0.00	0	61	0	61	n	0.20	10	41	10	41	y	0.11	7	54	7	54	n	0.08	3	36	3	36	n	0.08	4	48	4	48	n	0.0385791726649227	-2.88044609339763	down	ENSMUSG00000055737.13	Ghr	chr15	protein_coding	growth hormone receptor
novel_NIR_6689	chr15	54783094	54815939	-	54783094	54783325	5pMXE	ENSMUST00000041591.16	novel	0.00	0	3	0	3	n	0.00	0	1	0	1	n	0.00	0	15	0	15	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.27	3	8	3	8	y	0.50	2	2	2	2	y	0.29	2	5	2	5	y	0.0407141613526653	-4.8033184969521	down	ENSMUSG00000022425.17	Enpp2	chr15	protein_coding	ectonucleotide pyrophosphatase/phosphodiesterase 2
novel_NIR_6717	chr15	58815979	58817166	-	58815979	58817211	A5SS	ENSMUST00000080371.8	novel	0.11	18	150	18	150	n	0.10	13	119	13	119	n	0.15	31	172	31	172	y	0.14	29	175	29	175	n	0.18	24	112	24	112	y	0.20	43	169	43	169	y	0.13	18	121	18	121	n	0.18	47	210	47	210	y	0.0492784989461727	-2.48768394869031	down	ENSMUSG00000022353.11	Mtss1	chr15	protein_coding	MTSS I-BAR domain containing 1
novel_NIR_6744	chr15	66502919	66504555	+	66502894	66504555	A5SS	ENSMUST00000229033.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.00816340186582448	11	up	ENSMUSG00000072501.6	Phf20l1	chr15	protein_coding	PHD finger protein 20-like 1
novel_NIR_6766	chr15	7183766	7183868	+	7159307	7183868	A5SS	ENSMUST00000067190.12	novel	0.00	0	35	0	35	n	0.06	2	31	2	31	n	0.00	0	36	0	36	n	0.06	4	67	4	67	n	0.17	11	54	11	54	n	0.12	13	100	13	100	n	0.17	13	64	13	64	y	0.13	14	94	14	94	n	0.00206967555567211	-5.4031317399374	down	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6768	chr15	7183766	7183868	+	7170064	7183868	A5SS	ENSMUST00000226934.2	novel	0.00	0	49	0	49	n	0.08	2	22	2	22	n	0.00	0	3	0	3	n	0.03	4	137	4	137	n	0.09	11	106	11	106	n	0.08	13	147	13	147	n	0.12	13	91	13	91	n	0.13	14	96	14	96	n	0.0174478991232797	-3.47314864442571	down	ENSMUSG00000054263.13	Lifr	chr15	protein_coding	LIF receptor alpha
novel_NIR_6782	chr15	74828562	74829629	+	74829312	74829629	A5SS&ES	ENSMUST00000191145.7	novel	0.50	4	4	4	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	1	0	1	0	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.0377495513506237	5	up	ENSMUSG00000022587.15	Ly6e	chr15	protein_coding	lymphocyte antigen 6 complex, locus E
novel_NIR_6798	chr15	75773104	75782071	-	75773104	75781309	5pMXE	ENSMUST00000144614.8	novel	0.30	3	7	3	7	y	0.60	6	4	6	4	y	1.00	3	0	3	0	y	0.29	2	5	2	5	y	0.00	0	6	0	6	n	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.00	0	7	0	7	n	0.0465500844204285	3.27645142268898	up	ENSMUSG00000055762.17	Eef1d	chr15	protein_coding	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
novel_NIR_6867	chr15	76546211	76546311	+	76546211	76546301	A3SS	ENSMUST00000230451.2	novel	0.00	0	15	0	15	n	0.00	0	10	0	10	n	0.00	0	3	0	3	n	0.00	0	14	0	14	n	0.08	1	11	1	11	n	0.19	3	13	3	13	y	0.14	3	18	3	18	n	0.16	3	16	3	16	y	0.00871072609855662	-6.1345908285072	down	ENSMUSG00000004187.12	Kifc2	chr15	protein_coding	kinesin family member C2
novel_NIR_6906	chr15	77613348	77617012	+	77613348	77618665	A3SS	ENSMUST00000230979.2	novel	0.10	7	63	7	63	n	0.05	2	39	2	39	n	0.09	1	10	1	10	n	0.09	9	92	9	92	n	0.16	12	61	12	61	y	0.17	16	76	16	76	y	0.20	22	86	22	86	y	0.21	23	85	23	85	y	0.000759243993011483	-6.30148089081629	down	ENSMUSG00000068246.7	Apol9b	chr15	protein_coding	apolipoprotein L 9b
novel_NIR_7344	chr16	17199753	17207205	-	17199753;17204193	17204100;17207205	ES	ENSMUST00000036161.12	novel	0.06	1	17.0	1	17;17	n	0.00	0	14.0	0	19;9	n	0.00	0	25.0	0	17;33	n	0.00	0	18.5	0	25;12	n	0.11	2	15.5	2	14;17	n	0.15	4	23.0	4	20;26	y	0.11	1	8.5	1	10;7	n	0.04	1	24.5	1	22;27	n	0.0228541364699423	-3.19949508551403	down	ENSMUSG00000041720.15	Pi4ka	chr16	protein_coding	phosphatidylinositol 4-kinase alpha
novel_NIR_7430	chr16	21620106	21627428	+	21625869	21627428	A5SS&ES	ENSMUST00000211443.2	novel	0.56	5	4	5	4	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	0.57	4	3	4	3	y	0.00	0	3	0	3	n	0.00	0	9	0	9	n	0.12	1	7	1	7	n	0.33	4	8	4	8	y	0.0100976711607616	3.92003492996214	up	ENSMUSG00000097290.10	1300002E11Rik	chr16	lncRNA	RIKEN cDNA 1300002E11 gene
novel_NIR_7465	chr16	22739138	22747825	+	22737340	22747825	A5SS	ENSMUST00000170805.9	novel	0.53	8	7	8	7	y	0.56	9	7	9	7	y	0.38	11	18	11	18	y	0.33	3	6	3	6	y	0.54	13	11	13	11	y	0.59	16	11	16	11	y	0.65	13	7	13	7	y	0.79	19	5	19	5	y	0.0485002767186999	-2.47019974748052	down	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7467	chr16	22739138	22747825	+	22740625	22747825	A5SS&ES	ENSMUST00000232097.2	novel	0.14	8	49	8	49	n	0.13	9	60	9	60	n	0.16	11	57	11	57	y	0.06	3	48	3	48	n	0.19	13	56	13	56	y	0.18	16	75	16	75	y	0.23	13	44	13	44	y	0.20	19	74	19	74	y	0.0290322809589164	-3.1917517372038	down	ENSMUSG00000022871.14	Fetub	chr16	protein_coding	fetuin beta
novel_NIR_7483	chr16	23012317	23037513	+	23012317	23022241	3pMXE	ENSMUST00000232204.2	novel	0.17	5	24	5	24	y	0.21	7	26	7	26	y	0.33	1	2	1	2	n	0.17	5	25	5	25	y	0.14	1	6	1	6	n	0.10	4	37	4	37	n	0.03	1	28	1	28	n	0.00	0	29	0	29	n	0.0225293154798516	3.07704296106244	up	ENSMUSG00000068463.5	B630019A10Rik	chr16	lncRNA	RIKEN cDNA B630019A10 gene
novel_NIR_7631	chr16	36711854	36713696	+	36711854	36715193	A3SS	ENSMUST00000114812.9	novel	0.33	1	2	1	2	n	-	-	-	-	-	-	0.36	4	7	4	7	y	0.60	3	2	3	2	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	-	-	-	-	-	-	0.12	1	7	1	7	n	0.0286034072051464	4.1339917320248	up	ENSMUSG00000034243.18	Golgb1	chr16	protein_coding	golgi autoantigen, golgin subfamily b, macrogolgin 1
novel_NIR_7744	chr16	45647589	45680685	-	45647589	45664571	5pMXE	ENSMUST00000125433.2	novel	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000033149.18	Phldb2	chr16	protein_coding	pleckstrin homology like domain, family B, member 2
novel_NIR_7848	chr16	64673388	64675917	+	64673388	64675914	A3SS	ENSMUST00000067744.8	novel	0.15	12	68	12	68	y	0.15	12	67	12	67	y	0.16	30	152	30	152	y	0.12	10	71	10	71	n	0.26	20	56	20	56	y	0.21	23	88	23	88	y	0.20	17	66	17	66	y	0.30	36	85	36	85	y	0.0186531767456442	-3.93291197589896	down	ENSMUSG00000054604.8	Cggbp1	chr16	protein_coding	CGG triplet repeat binding protein 1
novel_NIR_7900	chr16	84630762	84630882	-	84628395	84630882	A3SS	ENSMUST00000114193.8	novel	0.00	0	7	0	7	n	0.18	3	14	3	14	y	-	-	-	-	-	-	0.10	1	9	1	9	n	0.36	4	7	4	7	y	0.36	8	14	8	14	y	0.29	5	12	5	12	y	0.38	5	8	5	8	n	0.0271148410835766	-4.56445686991971	down	ENSMUSG00000022890.14	Atp5j	chr16	protein_coding	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
novel_NIR_7985	chr16	93393223	93394249	-	93393223	93396100	A5SS	ENSMUST00000123756.8	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.57	4	3	4	3	y	0.67	4	2	4	2	n	-	-	-	-	-	-	1.00	4	0	4	0	y	0.0289645935449529	-5.7473696648568	down	ENSMUSG00000022948.17	Setd4	chr16	protein_coding	SET domain containing 4
novel_NIR_8085	chr17	15159842	15163821	-	15159842	15163359	5pMXE	ENSMUST00000228869.2	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.75	6	2	6	2	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0198039411803931	-7	down	ENSMUSG00000046991.13	Wdr27	chr17	protein_coding	WD repeat domain 27
novel_NIR_8132	chr17	22122816	22123523	-	22122816	22123511	A5SS	ENSMUST00000186313.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.33	1	2	1	2	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	4	0	4	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	0.0149345014131363	-8.09090909090909	down	ENSMUSG00000078546.9	Zfp995	chr17	protein_coding	zinc finger protein 995
novel_NIR_8225	chr17	25054149	25058401	+	25054149;25055496	25055410;25058401	ES	ENSMUST00000234372.2	novel	0.15	3	17.5	3	13;22	y	0.18	4	18.5	4	19;18	y	0.30	5	11.5	5	13;10	y	0.29	6	14.5	6	17;12	y	0.49	11	11.5	11	8;15	y	0.49	24	25.0	24	28;22	y	0.47	20	22.5	20	17;28	y	0.36	12	21.0	12	20;22	y	0.00441342718385527	-4.52023253269266	down	ENSMUSG00000024155.9	Meiob	chr17	protein_coding	meiosis specific with OB domains
novel_NIR_8520	chr17	34249708	34249959	-	34249708	34250522	A5SS	ENSMUST00000173810.2	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	11	0	11	0	y	-	-	-	-	-	-	0.00	0	4	0	4	n	0.00	0	5	0	5	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	5	up	ENSMUSG00000024327.17	Slc39a7	chr17	protein_coding	solute carrier family 39 (zinc transporter), member 7
novel_NIR_8587	chr17	35342214;35344291	35344209;35345134	-	35342214	35345134	cassetteExon	ENSMUST00000173576.2	novel	0.08	0.5	6	1;0	6	n	0.20	1.5	6	3;0	6	n	0.00	0.0	1	0;0	1	n	0.00	0.0	2	0;0	2	n	0.33	1.5	3	2;1	3	n	0.18	2.0	9	3;1	9	n	0.27	1.5	4	2;1	4	n	0.25	2.0	6	4;0	6	n	0.0199758189215626	-3.31997104014189	down	ENSMUSG00000092241.2	Gm20522	chr17	lncRNA	predicted gene 20522
novel_NIR_8751	chr17	51146768	51159561	-	51120869	51159561	A3SS	ENSMUST00000024717.10	novel	0.09	1	10	1	10	n	0.14	1	6	1	6	n	0.12	2	14	2	14	n	0.05	1	19	1	19	n	0.00	0	7	0	7	n	0.00	0	14	0	14	n	0.00	0	8	0	8	n	0.00	0	11	0	11	n	0.0145187405855149	5.10753918455249	up	ENSMUSG00000023923.11	Tbc1d5	chr17	protein_coding	TBC1 domain family, member 5
novel_NIR_8965	chr17	84442012	84442265	-	84442108	84442265	A3SS	ENSMUST00000234741.2	novel	0.78	14	4	14	4	y	0.80	20	5	20	5	y	1.00	4	0	4	0	y	0.88	15	2	15	2	y	0.71	12	5	12	5	y	0.66	27	14	27	14	y	0.72	21	8	21	8	y	0.65	17	9	17	9	y	0.0303450326722023	3.40168025708304	up	ENSMUSG00000117485.2	Gm19696	chr17	lncRNA	predicted gene, 19696
novel_NIR_9016	chr17	86229369	86235937	-	86223781	86235937	A3SS	ENSMUST00000234707.2	novel	0.00	0	2	0	2	n	0.00	0	4	0	4	n	-	-	-	-	-	-	-	-	-	-	-	-	0.44	4	5	4	5	y	0.38	3	5	3	5	y	0.33	1	2	1	2	n	0.50	2	2	2	2	y	0.00152540481990736	-11.2009298494852	down	ENSMUSG00000117501.2	Gm30117	chr17	lncRNA	predicted gene, 30117
novel_NIR_9133	chr18	20999263	21000874	-	20999263	21000817	A5SS	ENSMUST00000225661.3	novel	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.00	0	2	0	2	n	0.40	2	3	2	3	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.50	2	2	2	2	y	0.0213541639876143	-4.43129367525598	down	ENSMUSG00000033382.16	Trappc8	chr18	protein_coding	trafficking protein particle complex 8
novel_NIR_9138	chr18	24604037	24606007	+	24604037	24608582	A3SS	ENSMUST00000234303.2	novel	1.00	5	0	5	0	y	1.00	1	0	1	0	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.50	2	2	2	2	y	0.83	5	1	5	1	y	0.50	4	4	4	4	y	0.50	3	3	3	3	y	0.0148918793935539	5.06060606060606	up	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9142	chr18	24604141	24608582	+	24604037	24608582	A5SS	ENSMUST00000234303.2	novel	1.00	1	0	1	0	n	1.00	7	0	7	0	y	1.00	3	0	3	0	y	1.00	4	0	4	0	y	0.50	2	2	2	2	y	0.75	3	1	3	1	y	0.60	6	4	6	4	y	0.79	11	3	11	3	y	0.0149043765195194	5.05906077656312	up	ENSMUSG00000024273.9	2700062C07Rik	chr18	protein_coding	RIKEN cDNA 2700062C07 gene
novel_NIR_9528	chr18	76033832;76096274	76096195;76144700	+	76033832	76144700	cassetteExon	ENSMUST00000058997.15	novel	0.14	0.5	3	1;0	3	n	0.00	0.0	3	0;0	3	n	0.11	0.5	4	1;0	4	n	-	-	-	-	-	-	0.33	1.5	3	2;1	3	n	0.67	2.0	1	2;2	1	y	0.33	1.5	3	0;3	3	n	1.00	2.5	0	3;2	0	y	0.0487653877168959	-3.0045924508488	down	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9529	chr18	76096274	76144700	+	76033832	76144700	A5SS	ENSMUST00000058997.15	novel	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.25	1	3	1	3	n	0.67	2	1	2	1	n	0.50	3	3	3	3	y	1.00	2	0	2	0	n	0.0310720316650633	-3.84369167483826	down	ENSMUSG00000044646.16	Zbtb7c	chr18	protein_coding	zinc finger and BTB domain containing 7C
novel_NIR_9618	chr19	10183182	10183788	+	10183488	10183788	A5SS	ENSMUST00000153854.8	novel	0.60	6	4	6	4	y	0.45	5	6	5	6	y	0.42	5	7	5	7	y	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.85	11	2	11	2	y	1.00	3	0	3	0	y	0.55	6	5	6	5	y	0.0365450810222936	-3.15911225491293	down	ENSMUSG00000036372.15	Tmem258	chr19	protein_coding	transmembrane protein 258
novel_NIR_9813	chr19	37152385	37184941	-	37152385	37184632	5pMXE	ENSMUST00000126188.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.60	3	2	3	2	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	0.00268544264625521	9.23579631883463	up	ENSMUSG00000039652.17	Cpeb3	chr19	protein_coding	cytoplasmic polyadenylation element binding protein 3
novel_NIR_9941	chr19	42034549	42047545	+	42034549	42040411	3pMXE	ENSMUST00000168414.2	novel	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.50	1	1	1	1	n	0.33	1	2	1	2	n	0.86	6	1	6	1	y	0.50	2	2	2	2	y	0.0379501079275672	2.83926174666447	up	ENSMUSG00000025176.15	Hoga1	chr19	protein_coding	4-hydroxy-2-oxoglutarate aldolase 1
novel_NIR_9950	chr19	4209459	4211063	-	4209459	4209565	A5SS&ES	ENSMUST00000130469.8	novel	0.50	2	2	2	2	y	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.00	0	3	0	3	n	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.00542395034130874	-4.24264068711928	down	ENSMUSG00000024830.18	Rps6kb2	chr19	protein_coding	ribosomal protein S6 kinase, polypeptide 2
novel_NIR_10004	chr19	45411679	45459454	+	45411679;45445049	45444972;45459454	ES	ENSMUST00000065601.13	novel	0.18	3	14.0	3	14;14	y	0.45	5	6.0	5	4;8	y	0.32	4	8.5	4	6;11	y	0.19	4	17.0	4	13;21	y	0.00	0	9.5	0	4;15	n	0.00	0	22.5	0	19;26	n	0.09	1	10.5	1	11;10	n	0.18	4	18.5	4	14;23	y	0.0344415646457848	2.8321088772035	up	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10005	chr19	45411679	45459454	+	45445049	45459454	A5SS&ES	ENSMUST00000111936.4	novel	0.18	3	14	3	14	y	0.38	5	8	5	8	y	0.27	4	11	4	11	y	0.16	4	21	4	21	y	0.00	0	15	0	15	n	0.00	0	26	0	26	n	0.09	1	10	1	10	n	0.15	4	23	4	23	y	0.0263307484424797	3.01288250692554	up	ENSMUSG00000025217.16	Btrc	chr19	protein_coding	beta-transducin repeat containing protein
novel_NIR_10037	chr19	46626135	46632792	+	46612018	46632792	A5SS	ENSMUST00000111855.5	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	9	0	9	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.0377495513506237	-5	down	ENSMUSG00000047731.18	Wbp1l	chr19	protein_coding	WW domain binding protein 1 like
novel_NIR_10113	chr19	55303204	55303932	-	55303204	55304112	A5SS	ENSMUST00000226103.2	novel	0.78	7	2	7	2	y	0.38	5	8	5	8	y	0.53	19	17	19	17	y	0.48	12	13	12	13	y	0.22	2	7	2	7	y	0.32	8	17	8	17	y	0.30	6	14	6	14	y	0.20	4	16	4	16	y	0.0387541774416596	3.13767859815992	up	ENSMUSG00000024982.11	Zdhhc6	chr19	protein_coding	zinc finger, DHHC domain containing 6
novel_NIR_10182	chr19	58443026	58443134	-	58443026	58443630	A5SS	ENSMUST00000026076.14	novel	0.10	5	44	5	44	n	0.03	1	28	1	28	n	0.13	13	86	13	86	n	0.12	13	98	13	98	n	0.30	9	21	9	21	y	0.19	13	54	13	54	y	0.24	6	19	6	19	y	0.15	8	47	8	47	y	0.0226751068667501	-3.16650248190562	down	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10184	chr19	58443026	58443134	-	58443026	58443893	A5SS	ENSMUST00000131877.2	novel	0.21	5	19	5	19	y	0.07	1	13	1	13	n	0.23	13	43	13	43	y	0.31	13	29	13	29	y	0.64	9	5	9	5	y	0.52	13	12	13	12	y	0.43	6	8	6	8	y	0.31	8	18	8	18	y	0.0227818968686621	-3.1457793313915	down	ENSMUSG00000025089.16	Gfra1	chr19	protein_coding	glial cell line derived neurotrophic factor family receptor alpha 1
novel_NIR_10216	chr19	61106785	61115445	-	61106788	61115445	A3SS	ENSMUST00000127290.8	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	4	0	4	n	0.0377495513506237	5	up	ENSMUSG00000074733.15	Zfp950	chr19	protein_coding	zinc finger protein 950
novel_NIR_10289	chr19	8320335	8321872	-	8313185	8321872	A3SS	ENSMUST00000064507.12	novel	0.19	3	13	3	13	y	0.27	4	11	4	11	y	0.00	0	4	0	4	n	0.10	1	9	1	9	n	0.32	6	13	6	13	y	0.23	7	23	7	23	y	0.53	9	8	9	8	y	0.33	10	20	10	20	n	0.0486091848785348	-2.4720028028593	down	ENSMUSG00000052562.16	Slc22a30	chr19	protein_coding	solute carrier family 22, member 30
novel_NIR_10349	chr2	104600525;104601020	104600844;104606517	-	104600525	104606517	cassetteExon	ENSMUST00000117237.2	novel	0.00	0.0	8	0;0	8	n	0.12	3.0	22	1;5	22	n	0.16	3.5	18	5;2	18	y	0.03	0.5	16	0;1	16	n	0.22	2.0	7	0;4	7	n	0.33	5.5	11	0;11	11	n	0.36	4.0	7	0;8	7	n	0.22	5.0	18	1;9	18	n	0.00788192424523857	-3.91216149810478	down	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10350	chr2	104601020	104606517	-	104600525	104606517	A3SS	ENSMUST00000117237.2	novel	0.00	0	8	0	8	n	0.19	5	22	5	22	n	0.10	2	18	2	18	n	0.06	1	16	1	16	n	0.36	4	7	4	7	y	0.50	11	11	11	11	y	0.53	8	7	8	7	y	0.33	9	18	9	18	n	0.00199158690046833	-5.3667061151934	down	ENSMUSG00000074994.7	Qser1	chr2	protein_coding	glutamine and serine rich 1
novel_NIR_10354	chr2	106799903	106804647	-	106799903	106804617	A5SS	ENSMUST00000028536.13	novel	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.00	0	5	0	5	n	0.31	5	11	5	11	y	0.33	3	6	3	6	y	0.42	8	11	8	11	y	0.50	4	4	4	4	y	0.42	8	11	8	11	y	0.0148952728488962	-4.00346470398435	down	ENSMUSG00000027122.16	Arl14ep	chr2	protein_coding	ADP-ribosylation factor-like 14 effector protein
novel_NIR_10399	chr2	118751313	118752086	+	118751313	118752077	A3SS	ENSMUST00000036578.7	novel	0.23	3	10	3	10	y	0.19	4	17	4	17	y	0.23	6	20	6	20	y	0.32	6	13	6	13	y	0.28	5	13	5	13	y	0.50	8	8	8	8	y	0.45	5	6	5	6	y	0.50	12	12	12	12	y	0.0268373608491137	-3.22118734385189	down	ENSMUSG00000040007.9	Bahd1	chr2	protein_coding	bromo adjacent homology domain containing 1
novel_NIR_10540	chr2	129147241	129148039	+	129147241	129148080	A3SS	ENSMUST00000144178.2	novel	-	-	-	-	-	-	0.70	7	3	7	3	y	1.00	2	0	2	0	y	1.00	6	0	6	0	y	0.00	0	1	0	1	n	0.25	1	3	1	3	n	0.50	3	3	3	3	y	0.25	1	3	1	3	n	0.00663009524869736	4.54905237945447	up	ENSMUSG00000085498.2	Gm14023	chr2	lncRNA	predicted gene 14023
novel_NIR_10719	chr2	153187098	153187541	-	153184784	153187541	A3SS	ENSMUST00000128026.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.33	1	2	1	2	n	-	-	-	-	-	-	0.50	1	1	1	1	n	0.0387968213685622	4.92800147686227	up	ENSMUSG00000073236.5	2500004C02Rik	chr2	lncRNA	RIKEN cDNA 2500004C02 gene
novel_NIR_10918	chr2	164721581	164724695	+	164722018	164724695	5pMXE	ENSMUST00000122810.2	novel	0.29	2	5	2	5	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.25	1	3	1	3	n	0.00	0	6	0	6	n	0.00	0	5	0	5	n	0.12	1	7	1	7	n	0.25	3	9	3	9	y	0.0244873621682829	3.08777982318254	up	ENSMUSG00000039849.7	Pcif1	chr2	protein_coding	phosphorylated CTD interacting factor 1
novel_NIR_10999	chr2	172971870	172972834	+	172971870	172973499	A3SS	ENSMUST00000142207.8	novel	1.00	2	0	2	0	y	1.00	1	0	1	0	n	1.00	9	0	9	0	y	1.00	1	0	1	0	n	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.67	2	1	2	1	y	0.0156470487758018	4.97014925373134	up	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_11001	chr2	172971870	172979793	+	172971870	172973499	3pMXE	ENSMUST00000142207.8	novel	1.00	22	0	22	0	y	1.00	24	0	24	0	y	1.00	46	0	46	0	y	1.00	31	0	31	0	y	0.88	7	1	7	1	y	0.88	22	3	22	3	y	0.86	12	2	12	2	y	0.92	12	1	12	1	y	0.00276902794531063	9.13927326374879	up	ENSMUSG00000087382.8	Ctcflos	chr2	lncRNA	CCCTC-binding factor (zinc finger protein)-like, opposite strand
novel_NIR_11044	chr2	177193590;177194987	177194886;177198702	+	177193590	177198702	cassetteExon	ENSMUST00000142549.2	novel	0.17	11.0	54	0;22	54	n	0.10	6.5	59	0;13	59	n	0.15	5.5	30	0;11	30	n	0.24	16.0	51	0;32	51	n	0.31	15.5	35	0;31	35	n	0.28	22.0	57	15;29	57	y	0.29	29.5	72	15;44	72	y	0.20	11.5	46	0;23	46	n	0.0330421705450228	-2.78151794983659	down	ENSMUSG00000094786.2	Gm14403	chr2	protein_coding	predicted gene 14403
novel_NIR_11066	chr2	180333841	180342859	-	180333841	180343754	A5SS	ENSMUST00000087517.10	novel	0.00	0	12	0	12	n	0.00	0	11	0	11	n	0.00	0	13	0	13	n	0.00	0	31	0	31	n	0.16	3	16	3	16	y	0.07	1	14	1	14	n	0.14	2	12	2	12	n	0.06	1	17	1	17	n	0.0230376339197881	-4.30718463324745	down	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11067	chr2	180333841	180342859	-	180333841	180351703	A5SS	ENSMUST00000103057.8	novel	0.00	0	8	0	8	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	5	0	5	n	0.60	3	2	3	2	y	0.14	1	6	1	6	n	0.40	2	3	2	3	y	0.25	1	3	1	3	n	0.0398107534200715	-3.48847115952861	down	ENSMUSG00000038914.16	Dido1	chr2	protein_coding	death inducer-obliterator 1
novel_NIR_11203	chr2	24972162	24972925	+	24972162	24972978	A3SS	ENSMUST00000150625.4	novel	0.00	0	2	0	2	n	0.00	0	6	0	6	n	-	-	-	-	-	-	0.00	0	2	0	2	n	0.20	2	8	2	8	y	0.13	2	13	2	13	n	0.14	1	6	1	6	n	0.33	2	4	2	4	y	0.0224774757540882	-4.34714133601331	down	ENSMUSG00000036813.12	Entpd8	chr2	protein_coding	ectonucleoside triphosphate diphosphohydrolase 8
novel_NIR_11631	chr2	5850196	5852932	+	5850196	5859627	A3SS	ENSMUST00000026927.10	novel	0.08	3	35	3	35	n	0.15	4	22	4	22	y	0.07	7	96	7	96	n	0.08	4	46	4	46	n	0.00	0	32	0	32	n	0.04	2	44	2	44	n	0.03	1	35	1	35	n	0.00	0	40	0	40	n	0.0162369833918946	3.66187142395543	up	ENSMUSG00000025817.13	Nudt5	chr2	protein_coding	nudix (nucleoside diphosphate linked moiety X)-type motif 5
novel_NIR_11670	chr2	5932942	5934449	-	5930078	5934449	A3SS	ENSMUST00000151649.2	novel	0.50	4	4	4	4	y	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.00	0	1	0	1	n	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.50	3	3	3	3	y	0.0446477866610998	2.82296072823721	up	ENSMUSG00000025815.14	Dhtkd1	chr2	protein_coding	dehydrogenase E1 and transketolase domain containing 1
novel_NIR_11867	chr2	90982909	90982997	-	90982909	90984780	A5SS	ENSMUST00000111373.8	novel	0.00	0	22	0	22	n	0.11	2	17	2	17	n	0.00	0	20	0	20	n	0.23	6	20	6	20	y	0.25	3	9	3	9	y	0.29	9	22	9	22	y	0.27	4	11	4	11	y	0.25	3	9	3	9	y	0.0442439996835181	-3.23289543648195	down	ENSMUSG00000040687.17	Madd	chr2	protein_coding	MAP-kinase activating death domain
novel_NIR_12024	chr3	107951744	107952196	-	107951744	107952126	5pMXE	ENSMUST00000106670.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00598625569770709	-7	down	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12025	chr3	107951744	107952196	-	107951744	107952161	5pMXE	ENSMUST00000178808.8	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	1	1	1	1	n	1.00	1	0	1	0	n	1.00	1	0	1	0	n	0.00598625569770709	-7	down	ENSMUSG00000027890.18	Gstm4	chr3	protein_coding	glutathione S-transferase, mu 4
novel_NIR_12175	chr3	131136109	131195851	-	131136109	131196169	A5SS	ENSMUST00000197057.2	novel	0.54	7	6	7	6	y	0.71	5	2	5	2	y	0.64	16	9	16	9	y	0.73	16	6	16	6	y	0.85	17	3	17	3	y	0.79	31	8	31	8	y	0.83	20	4	20	4	y	0.73	24	9	24	9	y	0.0348040815557981	-2.8761312813467	down	ENSMUSG00000050931.8	Sgms2	chr3	protein_coding	sphingomyelin synthase 2
novel_NIR_12351	chr3	157737285	157740409	-	157737285	157737628	A5SS&ES	ENSMUST00000137444.8	novel	-	-	-	-	-	-	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	1	0	1	0	n	0.50	1	1	1	1	n	0.00	0	4	0	4	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.0377495513506237	5	up	ENSMUSG00000055436.19	Srsf11	chr3	protein_coding	serine and arginine-rich splicing factor 11
novel_NIR_12501	chr3	57209057	57217679	-	57209057	57209149	5pMXE	ENSMUST00000196979.5	novel	0.75	3	1	3	1	y	0.67	2	1	2	1	y	-	-	-	-	-	-	0.67	2	1	2	1	y	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	4	0	4	n	-	-	-	-	-	-	0.00146195568956408	26.125	up	ENSMUSG00000027800.15	Tm4sf1	chr3	protein_coding	transmembrane 4 superfamily member 1
novel_NIR_12549	chr3	79530985	79535522	-	79530985	79535788	A5SS	ENSMUST00000120992.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.55	6	5	6	5	y	0.71	5	2	5	2	y	0.50	2	2	2	2	y	0.33	2	4	2	4	y	0.57	4	3	4	3	y	0.33	1	2	1	2	n	0.0328402962446343	3.00694445373644	up	ENSMUSG00000027809.15	Etfdh	chr3	protein_coding	electron transferring flavoprotein, dehydrogenase
novel_NIR_12559	chr3	81882736	81897299	-	81882736	81883080	5pMXE	ENSMUST00000193879.2	novel	0.00	0	8	0	8	n	0.00	0	4	0	4	n	0.17	1	5	1	5	n	0.00	0	5	0	5	n	0.43	3	4	3	4	y	0.21	3	11	3	11	y	0.12	2	14	2	14	n	0.25	3	9	3	9	y	0.0413507902677774	-2.70079244056807	down	ENSMUSG00000028011.17	Tdo2	chr3	protein_coding	tryptophan 2,3-dioxygenase
novel_NIR_12642	chr3	88323417	88327808	-	88323422	88327808	A3SS	ENSMUST00000193433.6	novel	0.00	0	63	0	63	n	0.00	0	41	0	41	n	0.07	5	63	5	63	n	0.00	0	92	0	92	n	0.11	11	92	11	92	n	0.11	12	94	12	94	n	0.20	20	78	20	78	y	0.15	17	97	17	97	y	0.00438296814115378	-4.52678730212593	down	ENSMUSG00000050144.14	Slc25a44	chr3	protein_coding	solute carrier family 25, member 44
novel_NIR_12721	chr3	89303169	89305266	+	89301700	89305266	A5SS	ENSMUST00000126926.2	novel	0.19	5	21	5	21	y	0.25	6	18	6	18	y	0.10	1	9	1	9	n	0.17	4	19	4	19	y	0.45	15	18	15	18	y	0.46	11	13	11	13	y	0.47	15	17	15	17	y	0.52	14	13	14	13	y	0.000634136462593306	-8.59554991032392	down	ENSMUSG00000074466.13	Gm15417	chr3	lncRNA	predicted gene 15417
novel_NIR_12772	chr3	90414933	90416079	-	90414933	90416081	A5SS	ENSMUST00000131868.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	1.00	2	0	2	0	y	-	-	-	-	-	-	0.00	0	1	0	1	n	0.50	2	2	2	2	y	0.33	1	2	1	2	n	-	-	-	-	-	-	0.0387968213685622	4.92800147686227	up	ENSMUSG00000001017.16	Chtop	chr3	protein_coding	chromatin target of PRMT1
novel_NIR_12890	chr3	98617673	98620744	-	98619633	98620744	A3SS	ENSMUST00000107022.8	novel	0.00	0	25	0	25	n	0.17	4	19	4	19	y	0.00	0	2	0	2	n	0.03	1	28	1	28	n	0.21	11	42	11	42	y	0.28	16	41	16	41	y	0.22	12	42	12	42	y	0.37	34	59	34	59	y	0.00713029859094098	-4.01663208837122	down	ENSMUSG00000063730.14	Hsd3b2	chr3	protein_coding	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
novel_NIR_13031	chr4	108405367	108406426	+	108405367	108406423	A3SS	ENSMUST00000097925.9	novel	0.60	6	4	6	4	y	0.75	3	1	3	1	y	0.76	13	4	13	4	y	0.56	5	4	5	4	y	0.25	3	9	3	9	y	0.23	3	10	3	10	y	0.46	6	7	6	7	y	0.29	4	10	4	10	y	0.00267085389685883	4.91607894239222	up	ENSMUSG00000034610.15	Tut4	chr4	protein_coding	terminal uridylyl transferase 4
novel_NIR_13361	chr4	134260063	134262500	-	134260063	134262216	5pMXE	ENSMUST00000154769.8	novel	0.17	1	5	1	5	n	0.00	0	4	0	4	n	0.11	1	8	1	8	n	0.12	1	7	1	7	n	0.29	2	5	2	5	y	0.44	4	5	4	5	y	0.50	2	2	2	2	y	0.43	3	4	3	4	y	0.00172009482103113	-5.51839518537726	down	ENSMUSG00000046671.19	Mtfr1l	chr4	protein_coding	mitochondrial fission regulator 1-like
novel_NIR_13370	chr4	135071980	135073627	-	135071980	135074046	A5SS	ENSMUST00000105861.8	novel	0.11	4	33	4	33	n	0.18	6	27	6	27	y	0.07	5	63	5	63	n	0.14	8	49	8	49	n	0.00	0	43	0	43	n	0.07	3	41	3	41	n	0.03	1	32	1	32	n	0.04	3	74	3	74	n	0.0217353801127683	3.286335345031	up	ENSMUSG00000028809.17	Srrm1	chr4	protein_coding	serine/arginine repetitive matrix 1
novel_NIR_13388	chr4	135961725	135961859	+	135961725	135961895	A3SS	ENSMUST00000047526.8	novel	0.11	2	16	2	16	n	0.00	0	19	0	19	n	0.00	0	37	0	37	n	0.00	0	20	0	20	n	0.08	1	11	1	11	n	0.21	7	26	7	26	y	0.16	3	16	3	16	y	0.12	3	21	3	21	n	0.025923195269833	-2.94083344689865	down	ENSMUSG00000036995.8	Asap3	chr4	protein_coding	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
novel_NIR_13414	chr4	137832747	137853121	+	137832747	137842464	3pMXE	ENSMUST00000058133.10	novel	-	-	-	-	-	-	0.00	0	3	0	3	n	0.50	3	3	3	3	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.0377495513506237	-5	down	ENSMUSG00000028760.17	Eif4g3	chr4	protein_coding	eukaryotic translation initiation factor 4 gamma, 3
novel_NIR_13453	chr4	140846092	140862130	-	140846092	140867003	A5SS	ENSMUST00000094549.11	novel	0.03	1	32	1	32	n	0.07	3	38	3	38	n	0.00	0	56	0	56	n	0.07	3	42	3	42	n	0.17	5	24	5	24	y	0.09	6	58	6	58	n	0.14	7	44	7	44	n	0.14	8	49	8	49	n	0.00805985720184409	-3.89293996226701	down	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13454	chr4	140847684	140862130	-	140847684	140867003	A5SS	ENSMUST00000148204.8	novel	0.30	16	37	16	37	y	0.18	8	36	8	36	y	0.00	0	31	0	31	n	0.28	25	64	25	64	y	0.36	21	37	21	37	y	0.42	46	64	46	64	y	0.32	33	70	33	70	y	0.55	51	42	51	42	y	0.0430723954644237	-2.6180245405558	down	ENSMUSG00000040842.18	Szrd1	chr4	protein_coding	SUZ RNA binding domain containing 1
novel_NIR_13482	chr4	144619945	144620152	+	144619945	144620155	A3SS	ENSMUST00000142808.8	novel	0.00	0	20	0	20	n	0.13	2	13	2	13	n	0.00	0	3	0	3	n	0.05	1	19	1	19	n	0.14	3	18	3	18	n	0.19	4	17	4	17	y	0.29	9	22	9	22	y	0.14	4	25	4	25	n	0.0217375162071626	-3.09728201711373	down	ENSMUSG00000066026.15	Dhrs3	chr4	protein_coding	dehydrogenase/reductase (SDR family) member 3
novel_NIR_13639	chr4	155846716	155847827	+	155845743	155847827	A5SS	ENSMUST00000155010.2	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.75	3	1	3	1	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.62	5	3	5	3	y	0.0193457923295135	-7.08489311533802	down	ENSMUSG00000054514.4	Atad3aos	chr4	lncRNA	ATPase family, AAA domain containing 3A, opposite strand
novel_NIR_13700	chr4	24902000	24903132	+	24901781	24903132	A5SS	ENSMUST00000151249.2	novel	0.00	0	8	0	8	n	0.00	0	22	0	22	n	0.08	1	11	1	11	n	0.19	3	13	3	13	y	0.29	6	15	6	15	y	0.31	5	11	5	11	y	0.15	2	11	2	11	y	0.25	1	3	1	3	n	0.0204232541239284	-3.18194319684001	down	ENSMUSG00000028261.14	Ndufaf4	chr4	protein_coding	NADH:ubiquinone oxidoreductase complex assembly factor 4
novel_NIR_13921	chr4	59333033	59333155	-	59333033	59349826	A5SS	ENSMUST00000040166.14	novel	0.72	18	7	18	7	y	0.79	11	3	11	3	y	0.98	182	4	182	4	y	0.71	10	4	10	4	y	0.40	6	9	6	9	y	0.41	12	17	12	17	y	0.60	9	6	9	6	y	0.72	36	14	36	14	y	0.037990231538021	2.683117530301	up	ENSMUSG00000038578.16	Susd1	chr4	protein_coding	sushi domain containing 1
novel_NIR_14032	chr4	86829944	86835631	+	86829990	86835631	A5SS	ENSMUST00000045224.14	novel	0.00	0	7	0	7	n	0.00	0	5	0	5	n	0.05	1	19	1	19	n	0.06	1	15	1	15	n	0.40	2	3	2	3	y	0.50	5	5	5	5	y	1.00	1	0	1	0	n	0.29	2	5	2	5	y	0.0444165630687812	-3.2989562784692	down	ENSMUSG00000038007.15	Acer2	chr4	protein_coding	alkaline ceramidase 2
novel_NIR_14117	chr4	99104198	99106262	+	99104198	99106202	A3SS	ENSMUST00000030279.15	novel	0.10	3	26	3	26	n	0.20	2	8	2	8	y	0.11	2	17	2	17	n	0.22	6	21	6	21	y	0.00	0	11	0	11	n	0.00	0	40	0	40	n	0.10	2	18	2	18	n	0.04	1	26	1	26	n	0.0211708396735094	3.16513517366856	up	ENSMUSG00000028550.16	Atg4c	chr4	protein_coding	autophagy related 4C, cysteine peptidase
novel_NIR_14166	chr5	104672162	104673684	+	104672291	104673684	A5SS	ENSMUST00000239420.2	novel	0.75	3	1	3	1	y	0.50	2	2	2	2	y	0.50	5	5	5	5	y	0.42	5	7	5	7	y	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.00343066413385953	4.74035040749264	up	ENSMUSG00000097392.5	Thoc2l	chr5	protein_coding	THO complex subunit 2-like
novel_NIR_14293	chr5	110429247	110431512	-	110425640	110431512	A3SS	ENSMUST00000155266.2	novel	1.00	9	0	9	0	y	1.00	3	0	3	0	n	1.00	3	0	3	0	y	0.78	7	2	7	2	y	0.69	9	4	9	4	y	0.73	11	4	11	4	y	0.80	4	1	4	1	y	0.80	4	1	4	1	y	0.0321218203915603	3.09581504558334	up	ENSMUSG00000029499.12	Pxmp2	chr5	protein_coding	peroxisomal membrane protein 2
novel_NIR_14369	chr5	115120440	115123808	+	115107136	115123808	A5SS	ENSMUST00000129609.2	novel	-	-	-	-	-	-	1.00	1	0	1	0	n	-	-	-	-	-	-	0.80	8	2	8	2	y	0.33	1	2	1	2	n	0.00	0	2	0	2	n	0.82	9	2	9	2	y	0.00	0	4	0	4	n	0.048847626321252	2.80868019764122	up	ENSMUSG00000086054.3	Hnf1aos1	chr5	lncRNA	HNF1 homeobox A, opposite strand 1
novel_NIR_14404	chr5	116599923	116600454	+	116599862	116600454	A5SS	ENSMUST00000126959.5	novel	0.09	1	10	1	10	n	0.36	5	9	5	9	y	0.36	8	14	8	14	y	0.22	2	7	2	7	y	0.00	0	11	0	11	n	0.00	0	11	0	11	n	0.12	1	7	1	7	n	0.00	0	13	0	13	n	0.0309165767006967	3.183686999863	up	ENSMUSG00000086219.8	Srrm4os	chr5	lncRNA	serine/arginine repetitive matrix 4, opposite strand
novel_NIR_14696	chr5	137568221	137568334	+	137568196	137568334	A5SS	ENSMUST00000031729.13	novel	0.39	98	153	98	153	y	0.38	84	136	84	136	y	0.41	130	184	130	184	y	0.42	163	227	163	227	y	0.32	97	206	97	206	y	0.34	160	307	160	307	y	0.38	107	177	107	177	y	0.35	130	243	130	243	y	0.0167913084809633	3.39180598296644	up	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14697	chr5	137568221	137568334	+	137568215	137568334	A5SS	ENSMUST00000200190.5	novel	0.79	98	26	98	26	y	0.81	84	20	84	20	y	0.78	130	37	130	37	y	0.75	163	55	163	55	y	0.72	97	38	97	38	y	0.76	160	51	160	51	y	0.75	107	36	107	36	y	0.70	130	55	130	55	y	0.0364465914311174	2.68866428968932	up	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14699	chr5	137568221	137569250	+	137569041	137569250	5pMXE	ENSMUST00000196471.5	novel	0.38	6	10	6	10	y	0.33	4	8	4	8	y	0.40	4	6	4	6	y	0.33	10	20	10	20	y	0.17	2	10	2	10	y	0.29	4	10	4	10	y	0.00	0	3	0	3	n	0.19	3	13	3	13	y	0.0412902043925123	3.14660301333558	up	ENSMUSG00000029716.14	Tfr2	chr5	protein_coding	transferrin receptor 2
novel_NIR_14709	chr5	138092401	138094046	+	138092401	138098852	A3SS	ENSMUST00000066617.12	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.17	1	5	1	5	n	0.50	1	1	1	1	n	-	-	-	-	-	-	0.50	2	2	2	2	y	0.67	2	1	2	1	y	0.0033627784416592	-6.23917748105777	down	ENSMUSG00000029729.13	Zkscan1	chr5	protein_coding	zinc finger with KRAB and SCAN domains 1
novel_NIR_14840	chr5	146022660	146022739	+	146022660	146024181	A3SS	ENSMUST00000199212.5	novel	0.11	5	39	5	39	n	0.00	0	14	0	14	n	0.00	0	6	0	6	n	0.05	2	36	2	36	n	0.26	23	67	23	67	n	0.15	10	55	10	55	n	0.43	48	63	48	63	n	0.23	20	68	20	68	n	0.0229501062524863	-3.52882864119914	down	ENSMUSG00000061292.11	Cyp3a59	chr5	protein_coding	cytochrome P450, family 3, subfamily a, polypeptide 59
novel_NIR_14901	chr5	151349660	151351553	+	151348046	151351553	A5SS	ENSMUST00000201142.4	novel	0.64	7	4	7	4	n	0.67	4	2	4	2	y	1.00	1	0	1	0	n	0.38	5	8	5	8	n	0.00	0	4	0	4	n	0.50	11	11	11	11	n	0.25	2	6	2	6	n	0.30	3	7	3	7	n	0.0477518152153212	2.50778989002308	up	ENSMUSG00000097321.6	1700028E10Rik	chr5	lncRNA	RIKEN cDNA 1700028E10 gene
novel_NIR_14959	chr5	25498246	25499555	-	25498246	25503868	A5SS	ENSMUST00000172556.8	novel	0.86	6	1	6	1	y	0.83	5	1	5	1	y	0.78	7	2	7	2	y	0.91	10	1	10	1	y	0.50	2	2	2	2	y	0.60	3	2	3	2	y	0.50	2	2	2	2	y	0.80	4	1	4	1	y	0.0334178151872606	3.23330814607719	up	ENSMUSG00000038056.16	Kmt2c	chr5	protein_coding	lysine (K)-specific methyltransferase 2C
novel_NIR_15270	chr5	73493275	73495874	-	73489543	73495874	A3SS	ENSMUST00000200830.4	novel	0.00	0	2	0	2	n	-	-	-	-	-	-	-	-	-	-	-	-	0.00	0	3	0	3	n	0.25	1	3	1	3	n	0.67	4	2	4	2	y	0.17	1	5	1	5	n	0.55	6	5	6	5	y	0.0412166296624606	-3.44064356901643	down	ENSMUSG00000029153.12	Ociad2	chr5	protein_coding	OCIA domain containing 2
novel_NIR_15291	chr5	77032048	77032159	-	77032048	77033894	A5SS	ENSMUST00000135697.8	novel	1.00	1	0	1	0	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	0.83	5	1	5	1	y	0.83	5	1	5	1	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.60	3	2	3	2	y	0.0499113429148774	3.14516538465638	up	ENSMUSG00000055923.17	Aasdh	chr5	protein_coding	aminoadipate-semialdehyde dehydrogenase
novel_NIR_15415	chr5	92722572	92735375	+	92722572;92733270	92733115;92735375	ES	ENSMUST00000082382.8	novel	0.05	2	37.5	2	11;64	n	0.04	2	50.0	2	25;75	n	0.00	0	8.5	0	3;14	n	0.03	2	60.5	2	31;90	n	0.15	6	34.0	6	16;52	y	0.09	5	51.5	5	21;82	n	0.16	8	42.0	8	29;55	y	0.06	2	34.0	2	22;46	n	0.0300666412972527	-3.23199367767484	down	ENSMUSG00000057068.16	Fam47e	chr5	protein_coding	family with sequence similarity 47, member E
novel_NIR_15476	chr6	113247662	113254756	+	113247662	113254792	A3SS	ENSMUST00000151149.2	novel	0.00	0	2	0	2	n	0.38	3	5	3	5	y	0.00	0	2	0	2	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.00245318680015085	-9.52631578947368	down	ENSMUSG00000030269.15	Mtmr14	chr6	protein_coding	myotubularin related protein 14
novel_NIR_15529	chr6	116261776	116264943	+	116263573	116264943	5pMXE	ENSMUST00000221069.2	novel	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.50	1	1	1	1	n	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.0387968213685622	-4.92800147686227	down	ENSMUSG00000042213.18	Zfand4	chr6	protein_coding	zinc finger, AN1-type domain 4
novel_NIR_15582	chr6	119377844	119394381	-	119377844;119378983	119378880;119394381	ES	ENSMUST00000189710.2	novel	-	-	-	-	-	-	0.00	0	2.0	0	4;0	n	0.00	0	1.5	0	3;0	n	-	-	-	-	-	-	0.57	2	1.5	2	3;0	y	-	-	-	-	-	-	1.00	2	0.0	2	0;0	y	1.00	1	0.0	1	0;0	n	0.0268711295957412	-5.97674418604651	down	ENSMUSG00000030168.14	Adipor2	chr6	protein_coding	adiponectin receptor 2
novel_NIR_15764	chr6	129210116	129210741	-	129210116	129210848	A5SS	ENSMUST00000181517.8	novel	1.00	3	0	3	0	y	-	-	-	-	-	-	0.50	1	1	1	1	n	1.00	2	0	2	0	y	0.00	0	2	0	2	n	0.60	3	2	3	2	y	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.0321380422427239	3.04750599961338	up	ENSMUSG00000097354.8	2310001H17Rik	chr6	lncRNA	RIKEN cDNA 2310001H17 gene
novel_NIR_15791	chr6	133083546	133084827	+	133082568	133084827	A5SS	ENSMUST00000191462.2	novel	0.00	0	36	0	36	n	0.00	0	24	0	24	n	0.00	0	11	0	11	n	0.15	6	33	6	33	y	0.32	8	17	8	17	y	0.34	22	42	22	42	y	0.22	10	36	10	36	y	0.21	10	37	10	37	y	0.00353442197173363	-4.67282092040782	down	ENSMUSG00000072704.7	Smim10l1	chr6	protein_coding	small integral membrane protein 10 like 1
novel_NIR_15851	chr6	138127860	138130559	+	138127860	138130494	A3SS	ENSMUST00000120939.8	novel	0.00	0	31	0	31	n	0.13	4	27	4	27	n	0.00	0	41	0	41	n	0.03	1	33	1	33	n	0.10	3	28	3	28	n	0.26	18	50	18	50	y	0.18	7	31	7	31	y	0.38	22	36	22	36	y	0.0415525371044139	-2.82712219866762	down	ENSMUSG00000008540.12	Mgst1	chr6	protein_coding	microsomal glutathione S-transferase 1
novel_NIR_16054	chr6	34853706	34854611	-	34853706	34854510	A5SS	ENSMUST00000055097.11	novel	0.00	0	1	0	1	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	3	0	3	n	1.00	1	0	1	0	n	1.00	2	0	2	0	y	0.50	1	1	1	1	n	-	-	-	-	-	-	0.0377495513506237	-5	down	ENSMUSG00000046806.14	Cyren	chr6	protein_coding	cell cycle regulator of NHEJ
novel_NIR_16080	chr6	38531998	38534235	+	38531998	38547445	A3SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.50	3	3	3	3	y	0.50	2	2	2	2	y	0.00	0	5	0	5	n	0.80	4	1	4	1	y	0.56	5	4	5	4	y	1.00	4	0	4	0	y	0.50	3	3	3	3	y	0.0472546763090654	-2.51965602881581	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16088	chr6	38531998;38536239	38536139;38547445	+	38531998	38547445	cassetteExon	ENSMUST00000163047.8	novel	0.00	0.0	4	0;0	4	n	0.40	2.0	3	0;4	3	n	0.00	0.0	2	0;0	2	n	0.00	0.0	5	0;0	5	n	0.75	3.0	1	0;6	1	n	0.50	4.0	4	1;7	4	n	-	-	-	-	-	-	0.67	6.0	3	5;7	3	y	0.0075445753845509	-4.34674228204556	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16093	chr6	38536239	38547445	+	38531998	38547445	A5SS	ENSMUST00000163047.8	novel	0.00	0	4	0	4	n	0.57	4	3	4	3	y	0.00	0	2	0	2	n	0.00	0	5	0	5	n	0.86	6	1	6	1	y	0.64	7	4	7	4	n	-	-	-	-	-	-	0.70	7	3	7	3	n	0.0185701807707271	-3.76568718978141	down	ENSMUSG00000029823.17	Luc7l2	chr6	protein_coding	LUC7-like 2 (S. cerevisiae)
novel_NIR_16137	chr6	40620154	40621754	+	40620036	40621754	A5SS	ENSMUST00000201148.4	novel	0.20	2	8	2	8	y	0.00	0	5	0	5	n	0.23	5	17	5	17	y	0.26	5	14	5	14	y	0.58	7	5	7	5	y	0.33	6	12	6	12	y	0.50	4	4	4	4	y	0.42	13	18	13	18	y	0.011777809787875	-3.58237952409306	down	ENSMUSG00000068587.11	Mgam	chr6	protein_coding	maltase-glucoamylase
novel_NIR_16197	chr6	48571910	48573230	+	48571910	48573227	A3SS	ENSMUST00000009420.15	novel	0.38	11	18	11	18	y	0.36	14	25	14	25	y	0.36	12	21	12	21	y	0.39	22	34	22	34	y	0.44	22	28	22	28	y	0.46	25	29	25	29	y	0.47	23	26	23	26	y	0.40	20	30	20	30	y	0.0129313057541537	-4.06981329813668	down	ENSMUSG00000052751.17	Repin1	chr6	protein_coding	replication initiator 1
novel_NIR_16218	chr6	48815299	48815409	-	48815299	48818282	A5SS	ENSMUST00000205147.3	novel	0.11	1	8	1	8	n	0.20	2	8	2	8	y	0.11	2	16	2	16	n	0.10	1	9	1	9	n	0.00	0	10	0	10	n	0.00	0	13	0	13	n	0.12	1	7	1	7	n	0.00	0	11	0	11	n	0.0414147422804148	2.62612865719445	up	ENSMUSG00000029810.16	Tmem176b	chr6	protein_coding	transmembrane protein 176B
novel_NIR_16853	chr7	119459138	119494294	-	119459138	119494781	A5SS	ENSMUST00000059851.14	novel	0.00	0	6	0	6	n	0.17	1	5	1	5	n	0.04	1	23	1	23	n	0.00	0	16	0	16	n	0.17	1	5	1	5	n	0.17	2	10	2	10	n	0.29	2	5	2	5	y	0.20	1	4	1	4	n	0.0230406628339271	-3.14487249098634	down	ENSMUSG00000048787.14	Dcun1d3	chr7	protein_coding	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
novel_NIR_16871	chr7	120634845	120647061	+	120635024	120647061	A5SS	ENSMUST00000207332.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.57	4	3	4	3	y	0.00	0	1	0	1	n	1.00	2	0	2	0	y	-	-	-	-	-	-	1.00	1	0	1	0	n	0.67	2	1	2	1	y	0.0453953524225422	-3.18841263071994	down	ENSMUSG00000030876.8	Mettl9	chr7	protein_coding	methyltransferase like 9
novel_NIR_16947	chr7	126578168	126578473	+	126578168	126578477	A3SS	ENSMUST00000206346.2	novel	0.50	2	2	2	2	y	0.25	1	3	1	3	n	0.80	4	1	4	1	y	0.40	2	3	2	3	y	1.00	3	0	3	0	y	-	-	-	-	-	-	-	-	-	-	-	-	1.00	1	0	1	0	n	0.0215972999977841	-4.41260042050518	down	ENSMUSG00000030682.5	Cdipt	chr7	protein_coding	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
novel_NIR_17101	chr7	136978080	136978662	-	136978080	137012369	A5SS	ENSMUST00000145881.8	novel	0.71	5	2	5	2	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.75	3	1	3	1	y	0.20	1	4	1	4	n	0.62	5	3	5	3	n	0.00	0	5	0	5	n	0.00	0	2	0	2	n	0.0124792259614582	3.97994974842648	up	ENSMUSG00000040139.15	9430038I01Rik	chr7	protein_coding	RIKEN cDNA 9430038I01 gene
novel_NIR_17174	chr7	140486574;140486734	140486712;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.38	64.0	104	106;22	104	y	0.35	51.0	94	89;13	94	y	0.31	20.5	45	30;11	45	y	0.30	46.5	107	88;5	107	y	0.39	72.5	113	129;16	113	y	0.38	92.5	152	173;12	152	y	0.41	78.5	112	155;2	112	y	0.43	74.0	98	134;14	98	y	0.0265471986418339	-3.13164092575959	down	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17178	chr7	140486574;140486864	140486712;140487172	+	140486574	140487172	cassetteExon	ENSMUST00000209817.2	novel	0.36	57.5	104	106;9	104	y	0.33	46.0	94	89;3	94	y	0.31	20.5	45	30;11	45	y	0.32	49.5	107	88;11	107	y	0.38	69.5	113	129;10	113	y	0.37	90.5	152	173;8	152	y	0.42	80.5	112	155;6	112	y	0.42	70.0	98	134;6	98	y	0.00796996508742536	-3.96658706568257	down	ENSMUSG00000109628.2	BC024386	chr7	lncRNA	cDNA sequence BC023486
novel_NIR_17416	chr7	23834740	23835408	+	23834740	23836471	A3SS	ENSMUST00000205680.2	novel	0.07	1	13	1	13	n	0.00	0	4	0	4	n	0.14	1	6	1	6	n	0.09	1	10	1	10	n	0.33	2	4	2	4	y	0.56	5	4	5	4	y	0.38	3	5	3	5	y	1.00	4	0	4	0	y	0.0456633002499813	-3.17480504378692	down	ENSMUSG00000047603.10	Zfp235	chr7	protein_coding	zinc finger protein 235
novel_NIR_17453	chr7	25320517;25321472	25321398;25321769	+	25320517;25320937	25320849;25321769	MXE	ENSMUST00000126925.8	novel	0.49	9.0	9.5	3;15	15;4	y	0.45	4.5	5.5	0;9	7;4	n	0.33	2.0	4.0	1;3	3;5	n	0.30	4.0	9.5	0;8	14;5	n	0.59	8.0	5.5	1;15	8;3	n	0.68	11.5	5.5	2;21	7;4	y	0.63	8.5	5.0	3;14	8;2	y	0.55	10.5	8.5	2;19	15;2	y	0.00959267318551187	-4.10005118036603	down	ENSMUSG00000057229.12	Dmac2	chr7	protein_coding	distal membrane arm assembly complex 2
novel_NIR_17553	chr7	30206202	30209198	+	30206202	30207821	3pMXE	ENSMUST00000142514.8	novel	0.10	10	95	10	95	n	0.17	22	105	22	105	y	0.00	0	5	0	5	n	0.00	0	69	0	69	n	0.19	15	64	15	64	y	0.14	18	112	18	112	n	0.22	25	91	25	91	y	0.22	28	101	28	101	y	0.0492718011137166	-2.74135551509107	down	ENSMUSG00000036892.13	Prodh2	chr7	protein_coding	proline dehydrogenase (oxidase) 2
novel_NIR_17839	chr7	44796917	44797149	-	44796945	44797149	A3SS	ENSMUST00000211362.2	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.00	0	1	0	1	n	0.10	1	9	1	9	n	0.25	1	3	1	3	n	0.40	4	6	4	6	y	-	-	-	-	-	-	0.56	5	4	5	4	y	0.0430318180086551	-4.07113492710878	down	ENSMUSG00000007833.16	Aldh16a1	chr7	protein_coding	aldehyde dehydrogenase 16 family, member A1
novel_NIR_17882	chr7	45647849	45648074	-	45646398	45648074	A3SS	ENSMUST00000211780.2	novel	0.50	7	7	7	7	y	0.75	15	5	15	5	y	0.80	4	1	4	1	y	0.62	10	6	10	6	y	0.27	6	16	6	16	y	0.42	13	18	13	18	y	0.36	5	9	5	9	y	0.60	9	6	9	6	y	0.0391818169722402	2.62837716735337	up	ENSMUSG00000030834.8	Abcc6	chr7	protein_coding	ATP-binding cassette, sub-family C (CFTR/MRP), member 6
novel_NIR_18127	chr7	67888942	67899215	-	67888942	67908985	A5SS	ENSMUST00000207874.2	novel	-	-	-	-	-	-	0.00	0	1	0	1	n	0.00	0	1	0	1	n	-	-	-	-	-	-	-	-	-	-	-	-	0.67	2	1	2	1	y	0.50	1	1	1	1	n	0.67	2	1	2	1	y	0.00842838636300781	-10.8235294117647	down	ENSMUSG00000030553.4	Pgpep1l	chr7	protein_coding	pyroglutamyl-peptidase I-like
novel_NIR_18345	chr7	98002337	98010275	-	98002337	98009228	5pMXE	ENSMUST00000179780.3	novel	0.33	1	2	1	2	n	0.00	0	4	0	4	n	0.45	5	6	5	6	y	0.00	0	2	0	2	n	1.00	1	0	1	0	n	0.83	10	2	10	2	y	0.57	4	3	4	3	y	-	-	-	-	-	-	0.0185652133274241	-3.55831054583729	down	ENSMUSG00000049580.13	Tsku	chr7	protein_coding	tsukushi, small leucine rich proteoglycan
novel_NIR_18433	chr8	105783163	105783990	+	105783163	105783271	3pMXE	ENSMUST00000212481.2	novel	0.02	1	40	1	40	n	0.00	0	29	0	29	n	0.00	0	1	0	1	n	0.05	2	41	2	41	n	0.18	9	42	9	42	y	0.17	11	52	11	52	y	0.22	11	40	11	40	y	0.18	7	32	7	32	y	4.51615286730957e-05	-10.4926277974222	down	ENSMUSG00000069922.13	Ces3a	chr8	protein_coding	carboxylesterase 3A
novel_NIR_18459	chr8	106055090	106055222	+	106055090	106055404	A3SS	ENSMUST00000109372.3	novel	0.00	0	4	0	4	n	0.00	0	2	0	2	n	0.35	6	11	6	11	n	0.75	3	1	3	1	n	0.75	3	1	3	1	n	1.00	12	0	12	0	n	1.00	8	0	8	0	y	0.90	9	1	9	1	y	0.0317284652613051	-3.38997047962436	down	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18461	chr8	106055090;106055279	106055222;106055404	+	106055090	106055404	cassetteExon	ENSMUST00000109372.3	novel	0.27	1.5	4	0;3	4	n	0.00	0.0	2	0;0	2	n	0.31	5.0	11	6;4	11	y	0.67	2.0	1	3;1	1	n	0.67	2.0	1	3;1	1	n	1.00	8.0	0	12;4	0	y	1.00	4.0	0	8;0	0	n	0.82	4.5	1	9;0	1	n	0.0180222232796485	-3.5209797830781	down	ENSMUSG00000014856.13	Tmem208	chr8	protein_coding	transmembrane protein 208
novel_NIR_18678	chr8	123962560	123962889	-	123962588	123962889	A3SS	ENSMUST00000098327.2	novel	0.33	7	14	7	14	y	0.33	3	6	3	6	y	0.50	2	2	2	2	y	0.38	8	13	8	13	y	0.00	0	14	0	14	n	0.00	0	13	0	13	n	0.00	0	9	0	9	n	0.00	0	11	0	11	n	0.00239851871853275	9.60003238336507	up	ENSMUSG00000033594.12	Spata2l	chr8	protein_coding	spermatogenesis associated 2-like
novel_NIR_18679	chr8	123962560	123962889	-	123962662	123962889	A3SS	ENSMUST00000212818.2	novel	0.78	7	2	7	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	0.89	8	1	8	1	y	0.00	0	3	0	3	n	0.00	0	1	0	1	n	-	-	-	-	-	-	0.00	0	3	0	3	n	0.000412032566846203	17.4235908370203	up	ENSMUSG00000033594.12	Spata2l	chr8	protein_coding	spermatogenesis associated 2-like
novel_NIR_18745	chr8	129960713	129960790	-	129948431	129960790	A3SS	ENSMUST00000188757.7	novel	0.00	0	2	0	2	n	0.00	0	2	0	2	n	-	-	-	-	-	-	0.00	0	1	0	1	n	0.29	2	5	2	5	y	0.25	1	3	1	3	n	0.50	1	1	1	1	n	0.75	3	1	3	1	n	0.0299411465278855	-3.89898951616862	down	ENSMUSG00000071302.11	2610044O15Rik8	chr8	protein_coding	RIKEN cDNA 2610044O15 gene
novel_NIR_18759	chr8	13419580	13420172	+	13419580	13420169	A3SS	ENSMUST00000210501.2	novel	0.73	8	3	8	3	y	0.57	4	3	4	3	y	0.75	3	1	3	1	y	0.43	6	8	6	8	y	0.25	1	3	1	3	n	0.14	1	6	1	6	n	0.20	1	4	1	4	n	0.33	1	2	1	2	n	0.00732547911929884	4.58031771221469	up	ENSMUSG00000038482.12	Tfdp1	chr8	protein_coding	transcription factor Dp 1
novel_NIR_18774	chr8	19834866	20030551	+	20016688	20030551	5pMXE	ENSMUST00000140111.8	novel	0.00	0	4	0	4	n	0.00	0	3	0	3	n	0.00	0	2	0	2	n	0.08	1	11	1	11	n	0.33	2	4	2	4	y	1.00	3	0	3	0	y	0.64	7	4	7	4	y	0.30	3	7	3	7	y	0.0429302186491389	-3.32646502012398	down	ENSMUSG00000071793.13	2610005L07Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 2610005L07 gene
novel_NIR_18776	chr8	20158175	20163110	+	20157999	20163110	A5SS	ENSMUST00000153748.2	novel	1.00	1	0	1	0	n	-	-	-	-	-	-	1.00	3	0	3	0	y	0.50	3	3	3	3	y	0.00	0	1	0	1	n	0.17	1	5	1	5	n	-	-	-	-	-	-	0.44	4	5	4	5	y	0.043472540381087	2.99698113131085	up	ENSMUSG00000071796.14	6820431F20Rik	chr8	transcribed_unprocessed_pseudogene	RIKEN cDNA 6820431F20 gene
novel_NIR_18806	chr8	25043856	25066166	-	25043856;25048259	25048164;25066166	ES	ENSMUST00000121992.2	novel	0.07	10	126.0	10	108;144	n	0.08	5	58.0	5	53;63	n	0.06	2	31.0	2	32;30	n	0.07	14	189.0	14	147;231	n	0.20	21	83.5	21	71;96	y	0.11	17	135.0	17	119;151	n	0.13	13	85.0	13	73;97	n	0.15	17	93.5	17	70;117	y	0.0251300282702596	-3.92646307756296	down	ENSMUSG00000031549.17	Ido2	chr8	protein_coding	indoleamine 2,3-dioxygenase 2
novel_NIR_19225	chr8	71216524	71216721	-	71216524	71217192	A5SS	ENSMUST00000222087.4	novel	0.35	39	74	39	74	y	0.21	20	77	20	77	y	0.05	5	86	5	86	n	0.59	44	31	44	31	y	0.62	53	33	53	33	y	0.77	88	26	88	26	y	0.60	55	37	55	37	y	0.71	53	22	53	22	y	0.0402321179307718	-3.09558128779874	down	ENSMUSG00000031838.11	Ifi30	chr8	protein_coding	interferon gamma inducible protein 30
novel_NIR_19401	chr8	86750967	86751827	+	86750967	86753086	A3SS	ENSMUST00000053771.14	novel	0.15	3	17	3	17	y	0.00	0	12	0	12	n	0.00	0	15	0	15	n	0.30	6	14	6	14	n	0.50	6	6	6	6	y	0.27	6	16	6	16	y	0.43	3	4	3	4	y	0.38	8	13	8	13	y	0.0207994860250112	-3.26248217491689	down	ENSMUSG00000036879.16	Phkb	chr8	protein_coding	phosphorylase kinase beta
novel_NIR_19466	chr8	95208491	95209195	+	95208491;95208693	95208604;95209195	ES	ENSMUST00000211816.2	novel	0.00	0	7.0	0	8;6	n	0.00	0	7.0	0	5;9	n	0.09	1	10.0	1	12;8	n	0.00	0	6.5	0	6;7	n	0.33	4	8.0	4	6;10	y	0.36	5	9.0	5	10;8	y	0.27	2	5.5	2	7;4	y	0.06	1	14.5	1	11;18	n	0.0353806051127748	-3.26165240081831	down	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19467	chr8	95208491	95209195	+	95208693	95209195	5pMXE	ENSMUST00000183132.2	novel	0.00	0	6	0	6	n	0.00	0	9	0	9	n	0.11	1	8	1	8	n	0.00	0	7	0	7	n	0.29	4	10	4	10	y	0.38	5	8	5	8	y	0.33	2	4	2	4	y	0.05	1	18	1	18	n	0.0419792848392817	-3.00578855313807	down	ENSMUSG00000074151.14	Nlrc5	chr8	protein_coding	NLR family, CARD domain containing 5
novel_NIR_19662	chr9	107536663	107546052	-	107545945	107546052	A3SS&ES	ENSMUST00000192990.6	novel	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.00	0	1	0	1	n	0.25	1	3	1	3	n	-	-	-	-	-	-	0.20	1	4	1	4	n	0.33	8	16	8	16	y	0.0205517742787546	-6.86751706933987	down	ENSMUSG00000010064.16	Slc38a3	chr9	protein_coding	solute carrier family 38, member 3
novel_NIR_19810	chr9	112933909	112952050	-	112933155	112952050	A3SS	ENSMUST00000214620.2	novel	0.40	2	3	2	3	y	0.00	0	3	0	3	n	0.50	1	1	1	1	n	0.00	0	2	0	2	n	1.00	3	0	3	0	y	0.25	1	3	1	3	n	1.00	2	0	2	0	n	1.00	11	0	11	0	y	0.047048566461175	-2.56533301263985	down	ENSMUSG00000110996.2	Gm36251	chr9	lncRNA	predicted gene, 36251
novel_NIR_19819	chr9	114439790	114442692	-	114439793	114442692	A3SS	ENSMUST00000070117.8	novel	0.29	10	25	10	25	y	0.28	13	33	13	33	y	0.21	11	42	11	42	y	0.26	10	29	10	29	y	0.00	0	27	0	27	n	0.19	8	35	8	35	y	0.11	4	34	4	34	n	0.18	8	37	8	37	y	0.0419119956130576	2.96245158660611	up	ENSMUSG00000056167.9	Cnot10	chr9	protein_coding	CCR4-NOT transcription complex, subunit 10
novel_NIR_19847	chr9	119191604	119193563	+	119188380	119193563	A5SS	ENSMUST00000215822.2	novel	0.86	18	3	18	3	y	0.78	7	2	7	2	y	0.69	24	11	24	11	y	0.72	18	7	18	7	y	0.50	12	12	12	12	y	0.39	13	20	13	20	y	0.65	11	6	11	6	y	0.62	18	11	18	11	y	0.0247105507837831	3.16048266781653	up	ENSMUSG00000035769.10	Xylb	chr9	protein_coding	xylulokinase homolog (H. influenzae)
novel_NIR_19944	chr9	124201170	124201277	+	124201025	124201277	A5SS	ENSMUST00000216394.2	novel	0.00	0	3	0	3	n	0.00	0	4	0	4	n	0.25	1	3	1	3	n	0.00	0	3	0	3	n	1.00	2	0	2	0	y	0.67	2	1	2	1	y	0.50	3	3	3	3	y	1.00	6	0	6	0	y	0.00482674138255483	-5.23267241755258	down	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_19945	chr9	124201170	124201277	+	124201056	124201277	A5SS	ENSMUST00000239563.2	novel	0.00	0	34	0	34	n	0.00	0	47	0	47	n	0.02	1	42	1	42	n	0.00	0	45	0	45	n	0.05	2	35	2	35	n	0.04	2	53	2	53	n	0.12	3	23	3	23	n	0.15	6	34	6	34	y	0.0478716127824899	-3.12114931294673	down	ENSMUSG00000093803.6	Ppp2r3d	chr9	protein_coding	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
novel_NIR_20131	chr9	34966945	35027315	-	34966945	35010195	5pMXE	ENSMUST00000214526.2	novel	0.93	27	2	27	2	y	1.00	14	0	14	0	y	1.00	17	0	17	0	y	1.00	20	0	20	0	y	0.80	12	3	12	3	y	0.79	15	4	15	4	y	0.82	14	3	14	3	y	0.93	25	2	25	2	y	0.0118927433633233	4.01754267555713	up	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20136	chr9	34966945	35027572	-	34966945	35010195	5pMXE	ENSMUST00000214526.2	novel	0.50	2	2	2	2	y	1.00	3	0	3	0	y	1.00	2	0	2	0	y	1.00	3	0	3	0	y	0.25	1	3	1	3	n	0.33	2	4	2	4	y	0.00	0	3	0	3	n	0.50	2	2	2	2	y	0.0104441587574281	3.72058269380868	up	ENSMUSG00000032038.8	St3gal4	chr9	protein_coding	ST3 beta-galactoside alpha-2,3-sialyltransferase 4
novel_NIR_20270	chr9	45843071	45843691	-	45843071	45847132	A5SS	ENSMUST00000034590.4	novel	0.18	2	9	2	9	y	0.09	1	10	1	10	n	0.25	1	3	1	3	n	0.13	2	13	2	13	n	0.00	0	7	0	7	n	0.00	0	2	0	2	n	0.00	0	3	0	3	n	0.00	0	11	0	11	n	0.0181008975161637	4.71146457312563	up	ENSMUSG00000032085.6	Tagln	chr9	protein_coding	transgelin
novel_NIR_20502	chr9	63124307	63142571	-	63124307;63124647	63124621;63142571	ES	ENSMUST00000034920.11	novel	0.37	13	22.5	13	27;18	y	0.26	12	34.0	12	33;35	y	0.26	8	23.0	8	26;20	y	0.32	17	36.0	17	40;32	y	0.11	4	32.0	4	36;28	n	0.25	14	41.5	14	41;42	y	0.22	11	38.5	11	41;36	y	0.20	9	37.0	9	42;32	y	0.0373246836127964	2.6753353724045	up	ENSMUSG00000058444.9	Map2k5	chr9	protein_coding	mitogen-activated protein kinase kinase 5
novel_NIR_20673	chr9	77834679	77864423	+	77829303	77864423	A5SS	ENSMUST00000133757.8	novel	0.00	0	1	0	1	n	0.00	0	3	0	3	n	0.00	0	3	0	3	n	0.33	1	2	1	2	n	0.50	1	1	1	1	n	1.00	5	0	5	0	y	1.00	1	0	1	0	n	-	-	-	-	-	-	0.0276637430286762	-4.03743700537085	down	ENSMUSG00000032349.14	Elovl5	chr9	protein_coding	ELOVL family member 5, elongation of long chain fatty acids (yeast)
novel_NIR_20709	chr9	79665861	79666554	-	79665861	79666432	5pMXE	ENSMUST00000215933.2	novel	0.25	3	9	3	9	y	0.17	1	5	1	5	n	0.21	6	23	6	23	y	0.29	2	5	2	5	y	0.07	1	13	1	13	n	0.20	4	16	4	16	y	0.10	2	19	2	19	n	0.11	3	24	3	24	n	0.0279431204541904	2.8887415229139	up	ENSMUSG00000032330.8	Cox7a2	chr9	protein_coding	cytochrome c oxidase subunit 7A2
novel_NIR_21192	chrX	49666901	49669216	-	49666901	49669690	A5SS	ENSMUST00000204974.3	novel	0.69	11	5	11	5	y	0.65	17	9	17	9	y	0.50	7	7	7	7	y	0.59	10	7	10	7	y	0.83	24	5	24	5	y	0.74	26	9	26	9	y	0.71	15	6	15	6	y	0.71	17	7	17	7	y	0.0358102040504008	-2.79302614110137	down	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21193	chrX	49666901;49669297	49669216;49669458	-	49666901	49669458	cassetteExon	ENSMUST00000203933.3	novel	0.23	8.5	29	11;6	29	y	0.28	11.0	29	17;5	29	y	0.18	5.0	23	7;3	23	y	0.32	9.0	19	10;8	19	y	0.48	20.5	22	24;17	22	y	0.46	16.5	19	26;7	19	y	0.33	12.0	24	15;9	24	y	0.34	14.5	28	17;12	28	y	0.0251509557940588	-3.02275633115927	down	ENSMUSG00000085396.8	Firre	chrX	lncRNA	functional intergenic repeating RNA element
novel_NIR_21324	chrX	8065143	8065306	-	8064324	8065306	A3SS	ENSMUST00000082320.12	novel	-	-	-	-	-	-	0.00	0	10	0	10	n	0.00	0	2	0	2	n	0.00	0	4	0	4	n	0.17	2	10	2	10	y	0.17	3	15	3	15	y	0.07	1	13	1	13	n	0.20	3	12	3	12	y	0.0126373150667957	-5.37075052858631	down	ENSMUSG00000031169.14	Porcn	chrX	protein_coding	porcupine O-acyltransferase
