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["Table S5 Summary statistics of quality preprocessing of RNA-Sequencing reads from different organs of S. miltiorrhiza."]
["Sample","Raw reads","Raw bases","Clean reads","Clean bases","Error rate(%)","Q20(%)","Q30(%)","GC content(%)","Total reads","Total mapped","Multiple mapped","Uniquely mapped"]
["Root-1",47971666,7243721566,47611696,7061175399,0.0254,97.88,93.84,48.12,47611696,"42838784(89.98%)","2622670(5.51%)","40216114(84.47%)"]
["Root-2",49642322,7495990622,49183350,7303779066,0.0257,97.72,93.51,48.08,49183350,"44254504(89.98%)","2675674(5.44%)","41578830(84.54%)"]
["Root-3",47704804,7203425404,47295920,7006228004,0.0258,97.72,93.49,48.46,47295920,"42253536(89.34%)","2532144(5.35%)","39721392(83.98%)"]
["Stem-1",52397004,7911947604,45375164,6630029819,0.0264,97.43,93.02,49.65,45375164,"41134557(90.65%)","2327141(5.13%)","38807416(85.53%)"]
["Stem-2",50037628,7555681828,46336170,6791787530,0.0266,97.33,92.8,49.55,46336170,"42014389(90.67%)","2413383(5.21%)","39601006(85.46%)"]
["Stem-3",50631586,7645369486,50185140,7430064614,0.0262,97.56,93.1,48.47,50185140,"45968238(91.6%)","2875534(5.73%)","43092704(85.87%)"]
["Leaf-1",43880944,6626022544,43579530,6510052492,0.0257,97.76,93.55,48.61,43579530,"39655391(91.0%)","2581455(5.92%)","37073936(85.07%)"]
["Leaf-2",57448626,8674742526,56999046,8446334207,0.0257,97.76,93.6,49.02,56999046,"51915873(91.08%)","3442594(6.04%)","48473279(85.04%)"]
["Leaf-3",49400864,7459530464,48968330,7271878171,0.0258,97.71,93.47,49.18,48968330,"44498234(90.87%)","2918590(5.96%)","41579644(84.91%)"]
["Flower-1",43954674,6637155774,43524734,6468699648,0.0261,97.57,93.16,49.19,43524734,"38593719(88.67%)","2185753(5.02%)","36407966(83.65%)"]
["Flower-2",44614432,6736779232,44202208,6555192246,0.0257,97.73,93.54,49,44202208,"39291848(88.89%)","2308076(5.22%)","36983772(83.67%)"]
["Flower-3",44813854,6766891954,44373124,6581120433,0.0262,97.52,93.04,49.09,44373124,"39374196(88.73%)","2233752(5.03%)","37140444(83.7%)"]
["Raw reads: Statistical data for the original sequences."]
["Raw bases: Raw sequence number*sequence length (transformed into G bases)."]
["Clean reads: Count number of filtered reads."]
["Clean bases: Clean sequence number*sequence length (transformed into G bases)."]
["Error rate: Sequencing error rate (clean reads)."]
["Q20、Q30: Percentage of the number of bases of Phred score greater than 20, 30 respectively."]
["GC content: Percentage of G and C bases among the total base number."]
["Total mapped: Total number of reads could be mapped to the genome."]
["Multiple mapped: Count number of reads that could be mapped to multiple sites in the reference genome."]
["Uniquely mapped: Count number of reads that can be uniquely mapped to the reference genome."]