Library	Species	Assembly_bp	Ncontigs	GC	N50	L50	MLST_Allele_Profile	MLST_Seq_Type	SeroProf	ClermontPhylotype	FimType	VirFactorCount	VirFactorList	AqResGeneCount	AqResGeneList	MutResGeneCount	MutResGeneList	PlasCount	PlasList	SkesaPlasCount	SkesaPlasList	Sequence_Depth	Assembly	Est_Genome	Nreads	Coverage_Lighter	Coverage_Shovill	MLST_Loc_1	MLST_Loc1_ID	MLST_Loc1_Cov	MLST_Loc1_Allele	MLST_Loc_2	MLST_Loc2_ID	MLST_Loc2_Cov	MLST_Loc2_Allele	MLST_Loc_3	MLST_Loc3_ID	MLST_Loc3_Cov	MLST_Loc3_Allele	MLST_Loc_4	MLST_Loc4_ID	MLST_Loc4_Cov	MLST_Loc4_Allele	MLST_Loc_5	MLST_Loc5_ID	MLST_Loc5_Cov	MLST_Loc5_Allele	MLST_Loc_6	MLST_Loc6_ID	MLST_Loc6_Cov	MLST_Loc6_Allele	MLST_Loc_7	MLST_Loc7_ID	MLST_Loc7_Cov	MLST_Loc7_Allele	Serotype1	Serotype2	Serotype3	Antigen1	Antigen1ID	Antigen1_Temp_HSP_Len	Antigen2	Antigen2ID	Antigen2_Temp_HSP_Len	Antigen3	Antigen3ID	Antigen3_Temp_HSP_Len	VirFactor1	VirID1	VirQ_T_Len1	VirContig1	VirContig1Pos	VirProtFunc1	VirAccNo1	VirFactor2	VirID2	VirQ_T_Len2	VirContig2	VirContig2Pos	VirProtFunc2	VirAccNo2	VirFactor3	VirID3	VirQ_T_Len3	VirContig3	VirContig3Pos	VirProtFunc3	VirAccNo3	VirFactor4	VirID4	VirQ_T_Len4	VirContig4	VirContig4Pos	VirProtFunc4	VirAccNo4	VirFactor5	VirID5	VirQ_T_Len5	VirContig5	VirContig5Pos	VirProtFunc5	VirAccNo5	VirFactor6	VirID6	VirQ_T_Len6	VirContig6	VirContig6Pos	VirProtFunc6	VirAccNo6	VirFactor7	VirID7	VirQ_T_Len7	VirContig7	VirContig7Pos	VirProtFunc7	VirAccNo7	VirFactor8	VirID8	VirQ_T_Len8	VirContig8	VirContig8Pos	VirProtFunc8	VirAccNo8	VirFactor9	VirID9	VirQ_T_Len9	VirContig9	VirContig9Pos	VirProtFunc9	VirAccNo9	VirFactor10	VirID10	VirQ_T_Len10	VirContig10	VirContig10Pos	VirProtFunc10	VirAccNo10	VirFactor11	VirID11	VirQ_T_Len11	VirContig11	VirContig11Pos	VirProtFunc11	VirAccNo11	VirFactor12	VirID12	VirQ_T_Len12	VirContig12	VirContig12Pos	VirProtFunc12	VirAccNo12	VirFactor13	VirID13	VirQ_T_Len13	VirContig13	VirContig13Pos	VirProtFunc13	VirAccNo13	VirFactor14	VirID14	VirQ_T_Len14	VirContig14	VirContig14Pos	VirProtFunc14	VirAccNo14	VirFactor15	VirID15	VirQ_T_Len15	VirContig15	VirContig15Pos	VirProtFunc15	VirAccNo15	VirFactor16	VirID16	VirQ_T_Len16	VirContig16	VirContig16Pos	VirProtFunc16	VirAccNo16	VirFactor17	VirID17	VirQ_T_Len17	VirContig17	VirContig17Pos	VirProtFunc17	VirAccNo17	VirFactor18	VirID18	VirQ_T_Len18	VirContig18	VirContig18Pos	VirProtFunc18	VirAccNo18	VirFactor19	VirID19	VirQ_T_Len19	VirContig19	VirContig19Pos	VirProtFunc19	VirAccNo19	VirFactor20	VirID20	VirQ_T_Len20	VirContig20	VirContig20Pos	VirProtFunc20	VirAccNo20	VirFactor21	VirID21	VirQ_T_Len21	VirContig21	VirContig21Pos	VirProtFunc21	VirAccNo21	VirFactor22	VirID22	VirQ_T_Len22	VirContig22	VirContig22Pos	VirProtFunc22	VirAccNo22	VirFactor23	VirID23	VirQ_T_Len23	VirContig23	VirContig23Pos	VirProtFunc23	VirAccNo23	VirFactor24	VirID24	VirQ_T_Len24	VirContig24	VirContig24Pos	VirProtFunc24	VirAccNo24	VirFactor25	VirID25	VirQ_T_Len25	VirContig25	VirContig25Pos	VirProtFunc25	VirAccNo25	VirFactor26	VirID26	VirQ_T_Len26	VirContig26	VirContig26Pos	VirProtFunc26	VirAccNo26	VirFactor27	VirID27	VirQ_T_Len27	VirContig27	VirContig27Pos	VirProtFunc27	VirAccNo27	VirFactor28	VirID28	VirQ_T_Len28	VirContig28	VirContig28Pos	VirProtFunc28	VirAccNo28	VirFactor29	VirID29	VirQ_T_Len29	VirContig29	VirContig29Pos	VirProtFunc29	VirAccNo29	VirFactor30	VirID30	VirQ_T_Len30	VirContig30	VirContig30Pos	VirProtFunc30	VirAccNo30	VirFactor31	VirID31	VirQ_T_Len31	VirContig31	VirContig31Pos	VirProtFunc31	VirAccNo31	VirFactor32	VirID32	VirQ_T_Len32	VirContig32	VirContig32Pos	VirProtFunc32	VirAccNo32	VirFactor33	VirID33	VirQ_T_Len33	VirContig33	VirContig33Pos	VirProtFunc33	VirAccNo33	VirFactor34	VirID34	VirQ_T_Len34	VirContig34	VirContig34Pos	VirProtFunc34	VirAccNo34	VirFactor35	VirID35	VirQ_T_Len35	VirContig35	VirContig35Pos	VirProtFunc35	VirAccNo35	VirFactor36	VirID36	VirQ_T_Len36	VirContig36	VirContig36Pos	VirProtFunc36	VirAccNo36	VirFactor37	VirID37	VirQ_T_Len37	VirContig37	VirContig37Pos	VirProtFunc37	VirAccNo37	VirFactor38	VirID38	VirQ_T_Len38	VirContig38	VirContig38Pos	VirProtFunc38	VirAccNo38	VirFactor39	VirID39	VirQ_T_Len39	VirContig39	VirContig39Pos	VirProtFunc39	VirAccNo39	VirFactor40	VirID40	VirQ_T_Len40	VirContig40	VirContig40Pos	VirProtFunc40	VirAccNo40	ResGene1	ResID1	ResQ_T_Len1	ResContig1	ResContig1Pos	ResPredPheno1	ResAccNo1	ResGene2	ResID2	ResQ_T_Len2	ResContig2	ResContig2Pos	ResPredPheno2	ResAccNo2	ResGene3	ResID3	ResQ_T_Len3	ResContig3	ResContig3Pos	ResPredPheno3	ResAccNo3	ResGene4	ResID4	ResQ_T_Len4	ResContig4	ResContig4Pos	ResPredPheno4	ResAccNo4	ResGene5	ResID5	ResQ_T_Len5	ResContig5	ResContig5Pos	ResPredPheno5	ResAccNo5	ResGene6	ResID6	ResQ_T_Len6	ResContig6	ResContig6Pos	ResPredPheno6	ResAccNo6	ResGene7	ResID7	ResQ_T_Len7	ResContig7	ResContig7Pos	ResPredPheno7	ResAccNo7	Mutation1	NucChange1	AAChange1	MutRes1	MutPMResID1	PlasDB1	Plas1	PlasID1	PlasQ_T_Len1	PlasContig1	PlasContig1Pos	PlasAccNo1	PlasDB2	Plas2	PlasID2	PlasQ_T_Len2	PlasContig2	PlasContig2Pos	PlasAccNo2	PlasDB3	Plas3	PlasID3	PlasQ_T_Len3	PlasContig3	PlasContig3Pos	PlasAccNo3	PlasDB4	Plas4	PlasID4	PlasQ_T_Len4	PlasContig4	PlasContig4Pos	PlasAccNo4	PlasDB5	Plas5	PlasID5	PlasQ_T_Len5	PlasContig5	PlasContig5Pos	PlasAccNo5	PlasDB6	Plas6	PlasID6	PlasQ_T_Len6	PlasContig6	PlasContig6Pos	PlasAccNo6
SAM128598	Escherichia_coli	867070204	771	0.5024	128.046 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_279.139_Circ,	165	5490976	5231091	6000834	167.888	104.968	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00074 len=7013 cov=130.8 corr=0 origname=NODE_74_length_7013_cov_130.805692_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=61.7 corr=0 origname=NODE_1_length_314496_cov_61.735888_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=146717 cov=58.3 corr=0 origname=NODE_11_length_146717_cov_58.263282_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00042 len=31680 cov=26.6 corr=0 origname=NODE_42_length_31680_cov_26.605907_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=146717 cov=58.3 corr=0 origname=NODE_11_length_146717_cov_58.263282_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=146717 cov=58.3 corr=0 origname=NODE_11_length_146717_cov_58.263282_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00041 len=33136 cov=59.0 corr=0 origname=NODE_41_length_33136_cov_59.012044_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00062 len=11488 cov=22.2 corr=0 origname=NODE_62_length_11488_cov_22.160130_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=226631 cov=56.9 corr=0 origname=NODE_3_length_226631_cov_56.879235_pilon sw=shovill-spades/1.1.0 date=20231107	145728..146297			etpD	100	1758 / 1758	contig00042 len=31680 cov=26.6 corr=0 origname=NODE_42_length_31680_cov_26.605907_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00007 len=190646 cov=56.5 corr=0 origname=NODE_7_length_190646_cov_56.538658_pilon sw=shovill-spades/1.1.0 date=20231107	68137..68625	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=61.7 corr=0 origname=NODE_1_length_314496_cov_61.735888_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	gad	99.79	1401 / 1401	contig00019 len=108483 cov=55.0 corr=0 origname=NODE_19_length_108483_cov_54.980487_pilon sw=shovill-spades/1.1.0 date=20231107	63646..65046	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21369 cov=49.1 corr=0 origname=NODE_50_length_21369_cov_49.112323_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=50.2 corr=0 origname=NODE_32_length_51407_cov_50.170707_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00040 len=33153 cov=52.6 corr=0 origname=NODE_40_length_33153_cov_52.555532_pilon sw=shovill-spades/1.1.0 date=20231107	28868..29161	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00058 len=14484 cov=92.3 corr=0 origname=NODE_58_length_14484_cov_92.290349_pilon sw=shovill-spades/1.1.0 date=20231107	3125..3418	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00026 len=78936 cov=63.0 corr=0 origname=NODE_26_length_78936_cov_62.988103_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00026 len=78936 cov=63.0 corr=0 origname=NODE_26_length_78936_cov_62.988103_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00087 len=3725 cov=20.3 corr=0 origname=NODE_87_length_3725_cov_20.310952_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00074 len=7013 cov=130.8 corr=0 origname=NODE_74_length_7013_cov_130.805692_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=50.8 corr=0 origname=NODE_2_length_244736_cov_50.765865_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=58.0 corr=0 origname=NODE_55_length_15109_cov_57.994540_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=50.8 corr=0 origname=NODE_2_length_244736_cov_50.765865_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=53.5 corr=0 origname=NODE_16_length_124410_cov_53.469679_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21369 cov=49.1 corr=0 origname=NODE_50_length_21369_cov_49.112323_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00089 len=3446 cov=97.4 corr=0 origname=NODE_89_length_3446_cov_97.370790_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00086 len=3959 cov=78.6 corr=0 origname=NODE_86_length_3959_cov_78.631334_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=50.2 corr=0 origname=NODE_32_length_51407_cov_50.170707_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183911 cov=57.6 corr=0 origname=NODE_8_length_183911_cov_57.629518_pilon sw=shovill-spades/1.1.0 date=20231107	23046..23759	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00030 len=59935 cov=60.8 corr=0 origname=NODE_30_length_59935_cov_60.769601_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=146717 cov=58.3 corr=0 origname=NODE_11_length_146717_cov_58.263282_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00066 len=10445 cov=13.1 corr=0 origname=NODE_66_length_10445_cov_13.065205_pilon sw=shovill-spades/1.1.0 date=20231107	84..9593	Toxin B	AB011549	traT	100	423 / 423	contig00111 len=1756 cov=51.4 corr=0 origname=NODE_111_length_1756_cov_51.449249_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=50.2 corr=0 origname=NODE_32_length_51407_cov_50.170707_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=130.6 corr=0 origname=NODE_94_length_2769_cov_130.561613_pilon sw=shovill-spades/1.1.0 date=20231107	296..426	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31680 cov=26.6 corr=0 origname=NODE_42_length_31680_cov_26.605907_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00067 len=9309 cov=28.9 corr=0 origname=NODE_67_length_9309_cov_28.853113_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128599	Escherichia_coli	776102184	760	0.5024	124.514 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_271.466_Circ,	149	5487013	5177844	5368396	151.701	105.97	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5108 cov=59.2 corr=0 origname=NODE_76_length_5108_cov_59.248156_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=217941 cov=56.0 corr=0 origname=NODE_3_length_217941_cov_55.958022_pilon sw=shovill-spades/1.1.0 date=20231107	17016..18998	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.419036_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00043 len=31677 cov=38.3 corr=0 origname=NODE_43_length_31677_cov_38.273950_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.419036_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.419036_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=65366 cov=49.0 corr=0 origname=NODE_27_length_65366_cov_49.008732_pilon sw=shovill-spades/1.1.0 date=20231107	64004..64657	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=27.3 corr=0 origname=NODE_61_length_11488_cov_27.258138_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444771 cov=51.7 corr=0 origname=NODE_1_length_444771_cov_51.665463_pilon sw=shovill-spades/1.1.0 date=20231107	297340..297909			etpD	100	1758 / 1758	contig00043 len=31677 cov=38.3 corr=0 origname=NODE_43_length_31677_cov_38.273950_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444771 cov=51.7 corr=0 origname=NODE_1_length_444771_cov_51.665463_pilon sw=shovill-spades/1.1.0 date=20231107	122118..122606	Type 1 fimbriae		gad	100	1401 / 1401	contig00018 len=107685 cov=41.9 corr=0 origname=NODE_18_length_107685_cov_41.908954_pilon sw=shovill-spades/1.1.0 date=20231107	63646..65046	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=46.4 corr=0 origname=NODE_52_length_21369_cov_46.434157_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=41.5 corr=0 origname=NODE_33_length_51407_cov_41.546029_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00060 len=14890 cov=82.9 corr=1 origname=NODE_60_length_14890_cov_82.864383_pilon sw=shovill-spades/1.1.0 date=20231107	11470..11763	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00070 len=7997 cov=63.6 corr=0 origname=NODE_70_length_7997_cov_63.581331_pilon sw=shovill-spades/1.1.0 date=20231107	4812..5105	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=55.4 corr=0 origname=NODE_23_length_78936_cov_55.404946_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=55.4 corr=0 origname=NODE_23_length_78936_cov_55.404946_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00087 len=3725 cov=22.4 corr=0 origname=NODE_87_length_3725_cov_22.410842_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5108 cov=59.2 corr=0 origname=NODE_76_length_5108_cov_59.248156_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=45.0 corr=0 origname=NODE_2_length_244736_cov_44.970226_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15109 cov=55.2 corr=0 origname=NODE_58_length_15109_cov_55.236982_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=45.0 corr=0 origname=NODE_2_length_244736_cov_44.970226_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=50.7 corr=0 origname=NODE_16_length_124410_cov_50.684216_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=46.4 corr=0 origname=NODE_52_length_21369_cov_46.434157_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00090 len=3547 cov=75.0 corr=0 origname=NODE_90_length_3547_cov_74.957176_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00084 len=3959 cov=70.7 corr=0 origname=NODE_84_length_3959_cov_70.701138_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=41.5 corr=0 origname=NODE_33_length_51407_cov_41.546029_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183791 cov=50.0 corr=0 origname=NODE_7_length_183791_cov_49.973881_pilon sw=shovill-spades/1.1.0 date=20231107	22926..23639	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160492 cov=55.4 corr=0 origname=NODE_9_length_160492_cov_55.362435_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.419036_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22666 cov=25.4 corr=0 origname=NODE_51_length_22666_cov_25.407619_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00119 len=1756 cov=54.6 corr=0 origname=NODE_119_length_1756_cov_54.568769_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=41.5 corr=0 origname=NODE_33_length_51407_cov_41.546029_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2769 cov=126.9 corr=0 origname=NODE_95_length_2769_cov_126.851755_pilon sw=shovill-spades/1.1.0 date=20231107	2185..2315	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31677 cov=38.3 corr=0 origname=NODE_43_length_31677_cov_38.273950_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00067 len=9309 cov=35.4 corr=0 origname=NODE_67_length_9309_cov_35.443155_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128600	Escherichia_coli	660178948	748	0.5024	127.159 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_324.832_Circ,,Contig_2_34.8751_Circ,	129	5486740	5114719	4563678	130.536	107.273	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00071 len=5109 cov=42.2 corr=0 origname=NODE_71_length_5109_cov_42.196094_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=49.9 corr=0 origname=NODE_2_length_314496_cov_49.943204_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00009 len=145661 cov=45.0 corr=0 origname=NODE_9_length_145661_cov_44.980415_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00040 len=31679 cov=35.8 corr=0 origname=NODE_40_length_31679_cov_35.811701_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00009 len=145661 cov=45.0 corr=0 origname=NODE_9_length_145661_cov_44.980415_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00009 len=145661 cov=45.0 corr=0 origname=NODE_9_length_145661_cov_44.980415_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00029 len=58228 cov=39.4 corr=0 origname=NODE_29_length_58228_cov_39.414504_pilon sw=shovill-spades/1.1.0 date=20231107	767..1420	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00058 len=11488 cov=23.6 corr=0 origname=NODE_58_length_11488_cov_23.602088_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=616810 cov=45.0 corr=0 origname=NODE_1_length_616810_cov_44.980818_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00040 len=31679 cov=35.8 corr=0 origname=NODE_40_length_31679_cov_35.811701_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=616810 cov=45.0 corr=0 origname=NODE_1_length_616810_cov_44.980818_pilon sw=shovill-spades/1.1.0 date=20231107	322267..322755	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=49.9 corr=0 origname=NODE_2_length_314496_cov_49.943204_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	gad	99.93	1401 / 1401	contig00003 len=248869 cov=40.8 corr=0 origname=NODE_3_length_248869_cov_40.793060_pilon sw=shovill-spades/1.1.0 date=20231107	183157..184557	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00048 len=21369 cov=38.5 corr=0 origname=NODE_48_length_21369_cov_38.453849_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00031 len=51407 cov=32.9 corr=0 origname=NODE_31_length_51407_cov_32.922519_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00053 len=15139 cov=74.6 corr=0 origname=NODE_53_length_15139_cov_74.616095_pilon sw=shovill-spades/1.1.0 date=20231107	11719..12012	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00072 len=5083 cov=52.6 corr=0 origname=NODE_72_length_5083_cov_52.596554_pilon sw=shovill-spades/1.1.0 date=20231107	4812..5083	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=47.8 corr=0 origname=NODE_23_length_78936_cov_47.847638_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=47.8 corr=0 origname=NODE_23_length_78936_cov_47.847638_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00083 len=3725 cov=25.6 corr=0 origname=NODE_83_length_3725_cov_25.644469_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00071 len=5109 cov=42.2 corr=0 origname=NODE_71_length_5109_cov_42.196094_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00011 len=128221 cov=42.1 corr=0 origname=NODE_11_length_128221_cov_42.138305_pilon sw=shovill-spades/1.1.0 date=20231107	120636..121616	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=48.9 corr=0 origname=NODE_54_length_15109_cov_48.918032_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00011 len=128221 cov=42.1 corr=0 origname=NODE_11_length_128221_cov_42.138305_pilon sw=shovill-spades/1.1.0 date=20231107	119583..120575	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=42.0 corr=0 origname=NODE_14_length_124410_cov_42.048464_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00048 len=21369 cov=38.5 corr=0 origname=NODE_48_length_21369_cov_38.453849_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00078 len=4188 cov=61.9 corr=0 origname=NODE_78_length_4188_cov_61.896021_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00081 len=3959 cov=53.7 corr=0 origname=NODE_81_length_3959_cov_53.725181_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00031 len=51407 cov=32.9 corr=0 origname=NODE_31_length_51407_cov_32.922519_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183801 cov=43.0 corr=0 origname=NODE_7_length_183801_cov_42.996843_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00027 len=59904 cov=47.0 corr=0 origname=NODE_27_length_59904_cov_47.046913_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00009 len=145661 cov=45.0 corr=0 origname=NODE_9_length_145661_cov_44.980415_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.93	9510 / 9510	contig00047 len=22666 cov=27.9 corr=0 origname=NODE_47_length_22666_cov_27.884075_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00089 len=2786 cov=31.2 corr=0 origname=NODE_89_length_2786_cov_31.182560_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00031 len=51407 cov=32.9 corr=0 origname=NODE_31_length_51407_cov_32.922519_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00090 len=2769 cov=150.9 corr=0 origname=NODE_90_length_2769_cov_150.880881_pilon sw=shovill-spades/1.1.0 date=20231107	2313..2443	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00040 len=31679 cov=35.8 corr=0 origname=NODE_40_length_31679_cov_35.811701_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=9309 cov=37.5 corr=0 origname=NODE_62_length_9309_cov_37.513994_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128601	Escherichia_coli	885014988	757	0.502	127.212 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_429.917_Circ,	168	5506068	5262862	5466846	152.033	104.621	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=61.2 corr=0 origname=NODE_76_length_5109_cov_61.187126_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=56.1 corr=0 origname=NODE_1_length_314496_cov_56.062057_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=146717 cov=58.8 corr=0 origname=NODE_11_length_146717_cov_58.772182_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00044 len=31681 cov=38.8 corr=0 origname=NODE_44_length_31681_cov_38.750206_pilon sw=shovill-spades/1.1.0 date=20231107	17509..20505	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=146717 cov=58.8 corr=0 origname=NODE_11_length_146717_cov_58.772182_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=146717 cov=58.8 corr=0 origname=NODE_11_length_146717_cov_58.772182_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=56948 cov=47.7 corr=0 origname=NODE_31_length_56948_cov_47.667992_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=39.0 corr=0 origname=NODE_63_length_11488_cov_39.012284_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=226756 cov=51.2 corr=0 origname=NODE_2_length_226756_cov_51.187007_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00044 len=31681 cov=38.8 corr=0 origname=NODE_44_length_31681_cov_38.750206_pilon sw=shovill-spades/1.1.0 date=20231107	4572..6329	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=217072 cov=51.9 corr=0 origname=NODE_3_length_217072_cov_51.861983_pilon sw=shovill-spades/1.1.0 date=20231107	122118..122606	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=56.1 corr=0 origname=NODE_1_length_314496_cov_56.062057_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00053 len=21369 cov=50.3 corr=0 origname=NODE_53_length_21369_cov_50.325360_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=47.7 corr=0 origname=NODE_34_length_51407_cov_47.684738_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=52.4 corr=0 origname=NODE_43_length_33152_cov_52.428632_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00058 len=15139 cov=90.4 corr=0 origname=NODE_58_length_15139_cov_90.402512_pilon sw=shovill-spades/1.1.0 date=20231107	11719..12012	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=55.4 corr=0 origname=NODE_25_length_78936_cov_55.358983_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=55.4 corr=0 origname=NODE_25_length_78936_cov_55.358983_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00061 len=13382 cov=38.3 corr=0 origname=NODE_61_length_13382_cov_38.276202_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=61.2 corr=0 origname=NODE_76_length_5109_cov_61.187126_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00014 len=128122 cov=49.3 corr=0 origname=NODE_14_length_128122_cov_49.340074_pilon sw=shovill-spades/1.1.0 date=20231107	120636..121616	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00059 len=15109 cov=73.9 corr=0 origname=NODE_59_length_15109_cov_73.933213_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00014 len=128122 cov=49.3 corr=0 origname=NODE_14_length_128122_cov_49.340074_pilon sw=shovill-spades/1.1.0 date=20231107	119583..120575	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=47.4 corr=0 origname=NODE_17_length_124410_cov_47.435782_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00053 len=21369 cov=50.3 corr=0 origname=NODE_53_length_21369_cov_50.325360_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3446 cov=93.6 corr=0 origname=NODE_87_length_3446_cov_93.645306_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00085 len=3959 cov=73.5 corr=0 origname=NODE_85_length_3959_cov_73.463547_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=47.7 corr=0 origname=NODE_34_length_51407_cov_47.684738_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183691 cov=52.3 corr=0 origname=NODE_6_length_183691_cov_52.314265_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160521 cov=54.6 corr=0 origname=NODE_9_length_160521_cov_54.616512_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=146717 cov=58.8 corr=0 origname=NODE_11_length_146717_cov_58.772182_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.93	9510 / 9510	contig00052 len=22666 cov=26.0 corr=0 origname=NODE_52_length_22666_cov_26.005094_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00092 len=3036 cov=47.0 corr=0 origname=NODE_92_length_3036_cov_46.957216_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=47.7 corr=0 origname=NODE_34_length_51407_cov_47.684738_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=180.1 corr=0 origname=NODE_93_length_2769_cov_180.055265_pilon sw=shovill-spades/1.1.0 date=20231107	1493..1623	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31681 cov=38.8 corr=0 origname=NODE_44_length_31681_cov_38.750206_pilon sw=shovill-spades/1.1.0 date=20231107	26613..27294	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=13382 cov=38.3 corr=0 origname=NODE_61_length_13382_cov_38.276202_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128602	Escherichia_coli	657651566	758	0.5024	142.41 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_325.095_Circ,	128	5485672	5102124	4539076	130.176	107.517	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00069 len=7113 cov=101.6 corr=0 origname=NODE_69_length_7113_cov_101.580604_pilon sw=shovill-spades/1.1.0 date=20231107	6516..6612	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314656 cov=45.8 corr=0 origname=NODE_2_length_314656_cov_45.831100_pilon sw=shovill-spades/1.1.0 date=20231107	113731..115713	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146585 cov=43.0 corr=0 origname=NODE_12_length_146585_cov_42.968750_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00044 len=27254 cov=31.1 corr=0 origname=NODE_44_length_27254_cov_31.066340_pilon sw=shovill-spades/1.1.0 date=20231107	13082..16078	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146585 cov=43.0 corr=0 origname=NODE_12_length_146585_cov_42.968750_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146585 cov=43.0 corr=0 origname=NODE_12_length_146585_cov_42.968750_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00004 len=236097 cov=42.7 corr=0 origname=NODE_4_length_236097_cov_42.701228_pilon sw=shovill-spades/1.1.0 date=20231107	727..1380	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00057 len=11488 cov=23.9 corr=0 origname=NODE_57_length_11488_cov_23.888567_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444675 cov=42.5 corr=0 origname=NODE_1_length_444675_cov_42.501784_pilon sw=shovill-spades/1.1.0 date=20231107	297244..297813			etpD	100	1758 / 1758	contig00044 len=27254 cov=31.1 corr=0 origname=NODE_44_length_27254_cov_31.066340_pilon sw=shovill-spades/1.1.0 date=20231107	145..1902	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444675 cov=42.5 corr=0 origname=NODE_1_length_444675_cov_42.501784_pilon sw=shovill-spades/1.1.0 date=20231107	122022..122510	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314656 cov=45.8 corr=0 origname=NODE_2_length_314656_cov_45.831100_pilon sw=shovill-spades/1.1.0 date=20231107	95461..96861	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00047 len=21369 cov=41.9 corr=0 origname=NODE_47_length_21369_cov_41.911740_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00031 len=51407 cov=37.7 corr=0 origname=NODE_31_length_51407_cov_37.682789_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00040 len=33972 cov=43.2 corr=0 origname=NODE_40_length_33972_cov_43.230365_pilon sw=shovill-spades/1.1.0 date=20231107	4812..5105	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00054 len=14532 cov=60.6 corr=0 origname=NODE_54_length_14532_cov_60.625580_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78937 cov=49.5 corr=0 origname=NODE_23_length_78937_cov_49.479073_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78937 cov=49.5 corr=0 origname=NODE_23_length_78937_cov_49.479073_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00085 len=3725 cov=26.7 corr=0 origname=NODE_85_length_3725_cov_26.713814_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00069 len=7113 cov=101.6 corr=0 origname=NODE_69_length_7113_cov_101.580604_pilon sw=shovill-spades/1.1.0 date=20231107	3072..4397	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244735 cov=37.8 corr=0 origname=NODE_3_length_244735_cov_37.796439_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15109 cov=48.4 corr=0 origname=NODE_52_length_15109_cov_48.447530_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244735 cov=37.8 corr=0 origname=NODE_3_length_244735_cov_37.796439_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=38.7 corr=0 origname=NODE_16_length_124410_cov_38.724024_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00047 len=21369 cov=41.9 corr=0 origname=NODE_47_length_21369_cov_41.911740_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00086 len=3617 cov=65.5 corr=0 origname=NODE_86_length_3617_cov_65.520987_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=59.0 corr=0 origname=NODE_83_length_3959_cov_59.043950_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00031 len=51407 cov=37.7 corr=0 origname=NODE_31_length_51407_cov_37.682789_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183691 cov=43.4 corr=0 origname=NODE_7_length_183691_cov_43.363382_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160492 cov=44.3 corr=0 origname=NODE_9_length_160492_cov_44.315858_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146585 cov=43.0 corr=0 origname=NODE_12_length_146585_cov_42.968750_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00059 len=10445 cov=13.5 corr=0 origname=NODE_59_length_10445_cov_13.508922_pilon sw=shovill-spades/1.1.0 date=20231107	853..10362	Toxin B	AB011549	traT	100	423 / 423	contig00093 len=2786 cov=37.7 corr=0 origname=NODE_93_length_2786_cov_37.730983_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00031 len=51407 cov=37.7 corr=0 origname=NODE_31_length_51407_cov_37.682789_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=152.1 corr=0 origname=NODE_94_length_2769_cov_152.112771_pilon sw=shovill-spades/1.1.0 date=20231107	354..484	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=27254 cov=31.1 corr=0 origname=NODE_44_length_27254_cov_31.066340_pilon sw=shovill-spades/1.1.0 date=20231107	22186..22867	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00063 len=9309 cov=29.7 corr=0 origname=NODE_63_length_9309_cov_29.743545_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128603	Escherichia_coli	119360956	1073	0.4927	21.541 KB	76	adk_12,fumC_12,gyrB_8,icd_12,mdh_15*,purA_2,recA_2	11*	7:157:157	E	FimH82	25	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_46.0299_Circ,	70	5755213	1705090	818562	70.13	337.531	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	99.7787610619469	100	mdh_15*	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	99.94	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00273 len=5091 cov=8.1 corr=1 origname=NODE_273_length_5091_cov_8.051200_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00025 len=42857 cov=6.9 corr=25 origname=NODE_25_length_42857_cov_6.865875_pilon sw=shovill-spades/1.1.0 date=20231107	18927..20909	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	99.96	2805 / 2805	contig00338 len=3168 cov=7.4 corr=2 origname=NODE_338_length_3168_cov_7.382840_pilon sw=shovill-spades/1.1.0 date=20231107	126..2930		44	ehxA	99.97	2997 / 2997	contig00162 len=11186 cov=5.6 corr=6 origname=NODE_162_length_11186_cov_5.640829_pilon sw=shovill-spades/1.1.0 date=20231107	5222..8218	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00231 len=6669 cov=7.4 corr=1 origname=NODE_231_length_6669_cov_7.392825_pilon sw=shovill-spades/1.1.0 date=20231107	3434..4012	Type III secretions system	AE005174	espB	100	939 / 939	contig00231 len=6669 cov=7.4 corr=1 origname=NODE_231_length_6669_cov_7.392825_pilon sw=shovill-spades/1.1.0 date=20231107	1338..2276	Secreted protein B	AE005174	espJ	100	654 / 654	contig00251 len=6041 cov=7.6 corr=2 origname=NODE_251_length_6041_cov_7.633613_pilon sw=shovill-spades/1.1.0 date=20231107	4156..4809	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00013 len=50919 cov=6.9 corr=23 origname=NODE_13_length_50919_cov_6.862104_pilon sw=shovill-spades/1.1.0 date=20231107	35911..36480			etpD	99.94	1587 / 1758	contig00247 len=6160 cov=5.2 corr=4 origname=NODE_247_length_6160_cov_5.238590_pilon sw=shovill-spades/1.1.0 date=20231107	5..1591	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00319 len=3812 cov=7.1 corr=0 origname=NODE_319_length_3812_cov_7.090030_pilon sw=shovill-spades/1.1.0 date=20231107	2720..3208	Type 1 fimbriae		gad	99	1401 / 1401	contig00025 len=42857 cov=6.9 corr=25 origname=NODE_25_length_42857_cov_6.865875_pilon sw=shovill-spades/1.1.0 date=20231107	37779..39179	Glutamate decarboxylase	BA000007	hlyE	98.37	918 / 918	contig00113 len=14989 cov=7.0 corr=4 origname=NODE_113_length_14989_cov_7.004027_pilon sw=shovill-spades/1.1.0 date=20231107	3656..4573	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00129 len=13520 cov=6.9 corr=6 origname=NODE_129_length_13520_cov_6.862611_pilon sw=shovill-spades/1.1.0 date=20231107	10160..12250	Adherence protein	AE005174	iss	98.64	294 / 294	contig00298 len=4273 cov=9.1 corr=1 origname=NODE_299_length_4272_cov_9.124372_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00298 len=4273 cov=9.1 corr=1 origname=NODE_299_length_4272_cov_9.124372_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00323 len=3603 cov=4.8 corr=0 origname=NODE_323_length_3603_cov_4.805239_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00273 len=5091 cov=8.1 corr=1 origname=NODE_273_length_5091_cov_8.051200_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	990 / 990	contig00112 len=15103 cov=8.2 corr=6 origname=NODE_112_length_15103_cov_8.229483_pilon sw=shovill-spades/1.1.0 date=20231107	9279..10268	Non-LEE encoded effector B	AE005174	nleB	100	981 / 981	contig00155 len=11631 cov=9.3 corr=7 origname=NODE_155_length_11631_cov_9.305026_pilon sw=shovill-spades/1.1.0 date=20231107	3068..4048	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00155 len=11631 cov=9.3 corr=7 origname=NODE_155_length_11631_cov_9.305026_pilon sw=shovill-spades/1.1.0 date=20231107	4109..5101	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00065 len=23105 cov=6.9 corr=12 origname=NODE_65_length_23105_cov_6.862605_pilon sw=shovill-spades/1.1.0 date=20231107	11266..12150	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00225 len=6825 cov=5.6 corr=6 origname=NODE_225_length_6825_cov_5.592070_pilon sw=shovill-spades/1.1.0 date=20231107	2028..2981	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00379 len=2568 cov=9.9 corr=0 origname=NODE_379_length_2568_cov_9.854259_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00360 len=2775 cov=7.9 corr=3 origname=NODE_360_length_2775_cov_7.861401_pilon sw=shovill-spades/1.1.0 date=20231107	146..1386	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00107 len=15528 cov=5.5 corr=8 origname=NODE_107_length_15528_cov_5.522122_pilon sw=shovill-spades/1.1.0 date=20231107	13380..14420	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00058 len=27580 cov=6.9 corr=8 origname=NODE_58_length_27580_cov_6.852123_pilon sw=shovill-spades/1.1.0 date=20231107	24548..25261	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00003 len=70386 cov=7.4 corr=28 origname=NODE_3_length_70386_cov_7.434995_pilon sw=shovill-spades/1.1.0 date=20231107	58894..59857	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00134 len=13084 cov=6.7 corr=8 origname=NODE_134_length_13084_cov_6.742169_pilon sw=shovill-spades/1.1.0 date=20231107	10921..12615	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00359 len=2786 cov=8.6 corr=0 origname=NODE_359_length_2786_cov_8.555473_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00124 len=14211 cov=6.4 corr=4 origname=NODE_124_length_14211_cov_6.372734_pilon sw=shovill-spades/1.1.0 date=20231107	12230..12358	Outer membrane protein complement resistance	AMTE01000156																																																																																																																													enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00361 len=2769 cov=21.1 corr=0 origname=NODE_361_length_2769_cov_21.086632_pilon sw=shovill-spades/1.1.0 date=20231107	804..934	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00397 len=2339 cov=3.7 corr=0 origname=NODE_397_length_2339_cov_3.657028_pilon sw=shovill-spades/1.1.0 date=20231107	1370..2051	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00212 len=7924 cov=5.4 corr=3 origname=NODE_212_length_7924_cov_5.449508_pilon sw=shovill-spades/1.1.0 date=20231107	5630..5888	AY458016																					
SAM128604	Escherichia_coli	893618440	709	0.5024	142.245 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_273.255_Circ,	169	5484663	5269592	5486704	152.391	104.081	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00075 len=5108 cov=78.7 corr=0 origname=NODE_75_length_5108_cov_78.694838_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=56.3 corr=0 origname=NODE_1_length_314496_cov_56.291137_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=146717 cov=59.1 corr=0 origname=NODE_13_length_146717_cov_59.144388_pilon sw=shovill-spades/1.1.0 date=20231107	137000..139804		44	ehxA	100	2997 / 2997	contig00042 len=31679 cov=31.3 corr=0 origname=NODE_42_length_31679_cov_31.250760_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=146717 cov=59.1 corr=0 origname=NODE_13_length_146717_cov_59.144388_pilon sw=shovill-spades/1.1.0 date=20231107	142545..143123	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=146717 cov=59.1 corr=0 origname=NODE_13_length_146717_cov_59.144388_pilon sw=shovill-spades/1.1.0 date=20231107	144281..145219	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=56948 cov=49.9 corr=0 origname=NODE_31_length_56948_cov_49.917477_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=27.2 corr=0 origname=NODE_61_length_11488_cov_27.213653_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=226756 cov=51.6 corr=0 origname=NODE_3_length_226756_cov_51.572934_pilon sw=shovill-spades/1.1.0 date=20231107	145728..146297			etpD	100	1758 / 1758	contig00042 len=31679 cov=31.3 corr=0 origname=NODE_42_length_31679_cov_31.250760_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00005 len=204734 cov=49.9 corr=0 origname=NODE_5_length_204734_cov_49.853638_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=56.3 corr=0 origname=NODE_1_length_314496_cov_56.291137_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=47.6 corr=0 origname=NODE_49_length_21369_cov_47.581822_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=45.0 corr=0 origname=NODE_33_length_51407_cov_45.035895_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33255 cov=50.1 corr=0 origname=NODE_41_length_33255_cov_50.068387_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00056 len=14890 cov=84.9 corr=0 origname=NODE_56_length_14890_cov_84.866950_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=60.9 corr=0 origname=NODE_24_length_78936_cov_60.934568_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=60.9 corr=0 origname=NODE_24_length_78936_cov_60.934568_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00085 len=3725 cov=28.7 corr=0 origname=NODE_85_length_3725_cov_28.706109_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00075 len=5108 cov=78.7 corr=0 origname=NODE_75_length_5108_cov_78.694838_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=45.4 corr=0 origname=NODE_2_length_244736_cov_45.394171_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=63.0 corr=0 origname=NODE_54_length_15109_cov_63.043681_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=45.4 corr=0 origname=NODE_2_length_244736_cov_45.394171_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=49.2 corr=0 origname=NODE_16_length_124410_cov_49.232080_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=47.6 corr=0 origname=NODE_49_length_21369_cov_47.581822_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00095 len=2568 cov=82.0 corr=0 origname=NODE_95_length_2568_cov_82.035123_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=69.8 corr=0 origname=NODE_83_length_3959_cov_69.848501_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=45.0 corr=0 origname=NODE_33_length_51407_cov_45.035895_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183691 cov=51.7 corr=0 origname=NODE_8_length_183691_cov_51.672462_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59909 cov=56.3 corr=0 origname=NODE_29_length_59909_cov_56.286118_pilon sw=shovill-spades/1.1.0 date=20231107	4938..5901	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=146717 cov=59.1 corr=0 origname=NODE_13_length_146717_cov_59.144388_pilon sw=shovill-spades/1.1.0 date=20231107	134638..136332	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00063 len=10445 cov=14.8 corr=0 origname=NODE_63_length_10445_cov_14.825266_pilon sw=shovill-spades/1.1.0 date=20231107	84..9593	Toxin B	AB011549	traT	100	423 / 423	contig00113 len=1756 cov=51.2 corr=0 origname=NODE_113_length_1756_cov_51.177177_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=45.0 corr=0 origname=NODE_33_length_51407_cov_45.035895_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00091 len=2769 cov=113.3 corr=0 origname=NODE_91_length_2769_cov_113.294996_pilon sw=shovill-spades/1.1.0 date=20231107	327..457	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31679 cov=31.3 corr=0 origname=NODE_42_length_31679_cov_31.250760_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00066 len=9309 cov=31.3 corr=0 origname=NODE_66_length_9309_cov_31.301150_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128605	Escherichia_coli	934870222	768	0.5024	124.41 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_377.643_Circ,	176	5488253	5285378	5512218	152.645	103.838	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00078 len=5109 cov=59.9 corr=0 origname=NODE_78_length_5109_cov_59.875847_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=57.6 corr=0 origname=NODE_1_length_314655_cov_57.559587_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=146717 cov=58.4 corr=0 origname=NODE_11_length_146717_cov_58.440270_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00044 len=31678 cov=26.8 corr=0 origname=NODE_44_length_31678_cov_26.755342_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=146717 cov=58.4 corr=0 origname=NODE_11_length_146717_cov_58.440270_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=146717 cov=58.4 corr=0 origname=NODE_11_length_146717_cov_58.440270_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56965 cov=48.3 corr=0 origname=NODE_32_length_56965_cov_48.339487_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00062 len=11488 cov=21.9 corr=0 origname=NODE_62_length_11488_cov_21.905852_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=226756 cov=52.4 corr=0 origname=NODE_2_length_226756_cov_52.358895_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00044 len=31678 cov=26.8 corr=0 origname=NODE_44_length_31678_cov_26.755342_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=217745 cov=52.1 corr=0 origname=NODE_3_length_217745_cov_52.077862_pilon sw=shovill-spades/1.1.0 date=20231107	122892..123380	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=57.6 corr=0 origname=NODE_1_length_314655_cov_57.559587_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=46.9 corr=0 origname=NODE_51_length_21369_cov_46.944497_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=41.0 corr=0 origname=NODE_34_length_51407_cov_40.985209_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00058 len=14487 cov=70.2 corr=0 origname=NODE_58_length_14487_cov_70.175465_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00074 len=7178 cov=46.8 corr=0 origname=NODE_74_length_7178_cov_46.766756_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=56.9 corr=0 origname=NODE_25_length_78936_cov_56.880259_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=56.9 corr=0 origname=NODE_25_length_78936_cov_56.880259_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00090 len=3725 cov=17.8 corr=0 origname=NODE_90_length_3725_cov_17.757567_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00078 len=5109 cov=59.9 corr=0 origname=NODE_78_length_5109_cov_59.875847_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00014 len=128219 cov=51.7 corr=0 origname=NODE_14_length_128219_cov_51.725774_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=48.3 corr=0 origname=NODE_56_length_15109_cov_48.344520_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00014 len=128219 cov=51.7 corr=0 origname=NODE_14_length_128219_cov_51.725774_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=51.8 corr=0 origname=NODE_16_length_124410_cov_51.813496_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=46.9 corr=0 origname=NODE_51_length_21369_cov_46.944497_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00104 len=2397 cov=61.1 corr=0 origname=NODE_104_length_2397_cov_61.051171_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00086 len=3959 cov=81.7 corr=0 origname=NODE_86_length_3959_cov_81.738883_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=41.0 corr=0 origname=NODE_34_length_51407_cov_40.985209_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183691 cov=53.8 corr=0 origname=NODE_6_length_183691_cov_53.812309_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00031 len=59940 cov=57.1 corr=0 origname=NODE_31_length_59940_cov_57.110094_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=146717 cov=58.4 corr=0 origname=NODE_11_length_146717_cov_58.440270_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00065 len=10445 cov=11.6 corr=0 origname=NODE_65_length_10445_cov_11.558751_pilon sw=shovill-spades/1.1.0 date=20231107	853..10362	Toxin B	AB011549	traT	100	423 / 423	contig00094 len=3036 cov=34.6 corr=0 origname=NODE_94_length_3036_cov_34.642784_pilon sw=shovill-spades/1.1.0 date=20231107	1571..1993	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=41.0 corr=0 origname=NODE_34_length_51407_cov_40.985209_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00098 len=2769 cov=151.2 corr=0 origname=NODE_98_length_2769_cov_151.204630_pilon sw=shovill-spades/1.1.0 date=20231107	1198..1328	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31678 cov=26.8 corr=0 origname=NODE_44_length_31678_cov_26.755342_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00068 len=9309 cov=27.0 corr=0 origname=NODE_68_length_9309_cov_27.039163_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128606	Escherichia_coli	786367582	805	0.503	128.268 KB	11	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,toxB,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		148	5556716	5290291	5436386	150.359	105.036	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00063 len=8654 cov=94.6 corr=0 origname=NODE_63_length_8654_cov_94.636226_pilon sw=shovill-spades/1.1.0 date=20231107	8056..8152	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314455 cov=53.6 corr=0 origname=NODE_3_length_314455_cov_53.585939_pilon sw=shovill-spades/1.1.0 date=20231107	198936..200918	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=145662 cov=57.4 corr=0 origname=NODE_10_length_145662_cov_57.366900_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00037 len=31631 cov=44.6 corr=0 origname=NODE_37_length_31631_cov_44.605834_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=145662 cov=57.4 corr=0 origname=NODE_10_length_145662_cov_57.366900_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=145662 cov=57.4 corr=0 origname=NODE_10_length_145662_cov_57.366900_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=54936 cov=52.0 corr=0 origname=NODE_28_length_54936_cov_52.033330_pilon sw=shovill-spades/1.1.0 date=20231107	53557..54210	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00055 len=11475 cov=39.6 corr=0 origname=NODE_55_length_11475_cov_39.608837_pilon sw=shovill-spades/1.1.0 date=20231107	7404..11306	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=374880 cov=49.7 corr=0 origname=NODE_2_length_374880_cov_49.723460_pilon sw=shovill-spades/1.1.0 date=20231107	145806..146375			etpD	100	1758 / 1758	contig00037 len=31631 cov=44.6 corr=0 origname=NODE_37_length_31631_cov_44.605834_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00002 len=374880 cov=49.7 corr=0 origname=NODE_2_length_374880_cov_49.723460_pilon sw=shovill-spades/1.1.0 date=20231107	321118..321606	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314455 cov=53.6 corr=0 origname=NODE_3_length_314455_cov_53.585939_pilon sw=shovill-spades/1.1.0 date=20231107	217788..219188	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00015 len=110615 cov=46.6 corr=0 origname=NODE_15_length_110615_cov_46.615369_pilon sw=shovill-spades/1.1.0 date=20231107	67314..68714	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00048 len=17289 cov=48.2 corr=0 origname=NODE_48_length_17289_cov_48.201826_pilon sw=shovill-spades/1.1.0 date=20231107	9956..10873	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00030 len=47583 cov=44.2 corr=0 origname=NODE_30_length_47583_cov_44.158616_pilon sw=shovill-spades/1.1.0 date=20231107	33965..36055	Adherence protein	AE005174	iss	97.96	294 / 294	contig00001 len=432938 cov=51.3 corr=0 origname=NODE_1_length_432938_cov_51.295259_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1614	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00181 len=599 cov=49.2 corr=0 origname=NODE_181_length_599_cov_49.206693_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00047 len=21547 cov=71.7 corr=0 origname=NODE_47_length_21547_cov_71.690623_pilon sw=shovill-spades/1.1.0 date=20231107	17985..18278	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00047 len=21547 cov=71.7 corr=0 origname=NODE_47_length_21547_cov_71.690623_pilon sw=shovill-spades/1.1.0 date=20231107	17985..18278	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00035 len=36244 cov=34.4 corr=0 origname=NODE_35_length_36244_cov_34.352032_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00063 len=8654 cov=94.6 corr=0 origname=NODE_63_length_8654_cov_94.636226_pilon sw=shovill-spades/1.1.0 date=20231107	2938..4263	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00011 len=128268 cov=49.2 corr=0 origname=NODE_11_length_128268_cov_49.244974_pilon sw=shovill-spades/1.1.0 date=20231107	120683..121663	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15107 cov=65.7 corr=0 origname=NODE_52_length_15107_cov_65.678809_pilon sw=shovill-spades/1.1.0 date=20231107	4820..5809	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00011 len=128268 cov=49.2 corr=0 origname=NODE_11_length_128268_cov_49.244974_pilon sw=shovill-spades/1.1.0 date=20231107	119630..120622	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00004 len=303277 cov=41.6 corr=0 origname=NODE_4_length_303277_cov_41.564248_pilon sw=shovill-spades/1.1.0 date=20231107	301813..302799	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00014 len=124332 cov=45.7 corr=0 origname=NODE_14_length_124332_cov_45.669344_pilon sw=shovill-spades/1.1.0 date=20231107	107337..108221	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00081 len=4269 cov=65.5 corr=0 origname=NODE_81_length_4269_cov_65.482528_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00105 len=2038 cov=224.5 corr=0 origname=NODE_105_length_2038_cov_224.481253_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00030 len=47583 cov=44.2 corr=0 origname=NODE_30_length_47583_cov_44.158616_pilon sw=shovill-spades/1.1.0 date=20231107	30331..31371	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183583 cov=51.0 corr=0 origname=NODE_8_length_183583_cov_51.031020_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00026 len=60072 cov=54.0 corr=0 origname=NODE_26_length_60072_cov_54.014204_pilon sw=shovill-spades/1.1.0 date=20231107	4988..5951	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00010 len=145662 cov=57.4 corr=0 origname=NODE_10_length_145662_cov_57.366900_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12062	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00010 len=145662 cov=57.4 corr=0 origname=NODE_10_length_145662_cov_57.366900_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12062	Translocated intimin receptor protein	AF125993	toxB	99.95	9510 / 9510	contig00035 len=36244 cov=34.4 corr=0 origname=NODE_35_length_36244_cov_34.352032_pilon sw=shovill-spades/1.1.0 date=20231107	14189..23698	Toxin B	AB011549	traT	100	423 / 423	contig00030 len=47583 cov=44.2 corr=0 origname=NODE_30_length_47583_cov_44.158616_pilon sw=shovill-spades/1.1.0 date=20231107	1410..1832	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00030 len=47583 cov=44.2 corr=0 origname=NODE_30_length_47583_cov_44.158616_pilon sw=shovill-spades/1.1.0 date=20231107	11636..11764	Outer membrane protein complement resistance	AMTE01000156																													aph(6)-Id	100	837/837	contig00076 len=5154 cov=37.5 corr=0 origname=NODE_76_length_5154_cov_37.531108_pilon sw=shovill-spades/1.1.0 date=20231107	3219..4055	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00076 len=5154 cov=37.5 corr=0 origname=NODE_76_length_5154_cov_37.531108_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4857	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00076 len=5154 cov=37.5 corr=0 origname=NODE_76_length_5154_cov_37.531108_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00076 len=5154 cov=37.5 corr=0 origname=NODE_76_length_5154_cov_37.531108_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00076 len=5154 cov=37.5 corr=0 origname=NODE_76_length_5154_cov_37.531108_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF321550	sul2	100	816/816	contig00076 len=5154 cov=37.5 corr=0 origname=NODE_76_length_5154_cov_37.531108_pilon sw=shovill-spades/1.1.0 date=20231107	1631..2446	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00068 len=6731 cov=26.7 corr=0 origname=NODE_68_length_6731_cov_26.723343_pilon sw=shovill-spades/1.1.0 date=20231107	1328..2533	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00037 len=31631 cov=44.6 corr=0 origname=NODE_37_length_31631_cov_44.605834_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00035 len=36244 cov=34.4 corr=0 origname=NODE_35_length_36244_cov_34.352032_pilon sw=shovill-spades/1.1.0 date=20231107	7121..7379	AY458016																												
SAM128607	Escherichia_coli	656736652	725	0.5023	145.661 KB	12	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	28	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,tccP,tccP,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_300.295_Circ,	128	5482991	5121846	4544936	129.856	107.051	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=5109 cov=58.3 corr=0 origname=NODE_73_length_5109_cov_58.343762_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314464 cov=45.5 corr=0 origname=NODE_2_length_314464_cov_45.532994_pilon sw=shovill-spades/1.1.0 date=20231107	113530..115512	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145661 cov=46.8 corr=0 origname=NODE_12_length_145661_cov_46.763275_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00040 len=31679 cov=23.3 corr=0 origname=NODE_40_length_31679_cov_23.272224_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145661 cov=46.8 corr=0 origname=NODE_12_length_145661_cov_46.763275_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145661 cov=46.8 corr=0 origname=NODE_12_length_145661_cov_46.763275_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=57753 cov=40.6 corr=0 origname=NODE_28_length_57753_cov_40.579897_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00056 len=11488 cov=17.1 corr=0 origname=NODE_56_length_11488_cov_17.131350_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=614790 cov=43.1 corr=0 origname=NODE_1_length_614790_cov_43.110898_pilon sw=shovill-spades/1.1.0 date=20231107	467359..467928			etpD	100	1758 / 1758	contig00040 len=31679 cov=23.3 corr=0 origname=NODE_40_length_31679_cov_23.272224_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=614790 cov=43.1 corr=0 origname=NODE_1_length_614790_cov_43.110898_pilon sw=shovill-spades/1.1.0 date=20231107	292137..292625	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314464 cov=45.5 corr=0 origname=NODE_2_length_314464_cov_45.532994_pilon sw=shovill-spades/1.1.0 date=20231107	95260..96660	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00047 len=21472 cov=45.1 corr=0 origname=NODE_47_length_21472_cov_45.109583_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00031 len=51407 cov=38.2 corr=0 origname=NODE_31_length_51407_cov_38.215469_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00039 len=33153 cov=40.7 corr=0 origname=NODE_39_length_33153_cov_40.689704_pilon sw=shovill-spades/1.1.0 date=20231107	28868..29161	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00053 len=14599 cov=75.1 corr=0 origname=NODE_53_length_14599_cov_75.074855_pilon sw=shovill-spades/1.1.0 date=20231107	11725..12018	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00021 len=78937 cov=50.1 corr=0 origname=NODE_21_length_78937_cov_50.060625_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00021 len=78937 cov=50.1 corr=0 origname=NODE_21_length_78937_cov_50.060625_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00082 len=3725 cov=17.5 corr=0 origname=NODE_82_length_3725_cov_17.454595_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00073 len=5109 cov=58.3 corr=0 origname=NODE_73_length_5109_cov_58.343762_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=36.8 corr=0 origname=NODE_3_length_244736_cov_36.821141_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00051 len=15109 cov=47.0 corr=0 origname=NODE_51_length_15109_cov_46.988813_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=36.8 corr=0 origname=NODE_3_length_244736_cov_36.821141_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=38.3 corr=0 origname=NODE_15_length_124410_cov_38.321439_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00047 len=21472 cov=45.1 corr=0 origname=NODE_47_length_21472_cov_45.109583_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00085 len=3446 cov=66.6 corr=0 origname=NODE_85_length_3446_cov_66.610134_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00079 len=3959 cov=54.6 corr=0 origname=NODE_79_length_3959_cov_54.607032_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	tccP	99.31	1014 / 1014	contig00028 len=57753 cov=40.6 corr=0 origname=NODE_28_length_57753_cov_40.579897_pilon sw=shovill-spades/1.1.0 date=20231107	56564..57577	Tir-cytoskeleton coupling protein	AB253537	tccP	99.31	1014 / 1014	contig00028 len=57753 cov=40.6 corr=0 origname=NODE_28_length_57753_cov_40.579897_pilon sw=shovill-spades/1.1.0 date=20231107	56564..57577	Tir-cytoskeleton coupling protein	CP001368	terC	100	1041 / 1041	contig00031 len=51407 cov=38.2 corr=0 origname=NODE_31_length_51407_cov_38.215469_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183801 cov=43.7 corr=0 origname=NODE_7_length_183801_cov_43.714909_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160521 cov=43.8 corr=0 origname=NODE_9_length_160521_cov_43.777722_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=145661 cov=46.8 corr=0 origname=NODE_12_length_145661_cov_46.763275_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.93	8347 / 9510	contig00048 len=20871 cov=18.3 corr=0 origname=NODE_48_length_20871_cov_18.305534_pilon sw=shovill-spades/1.1.0 date=20231107	2..8348	Toxin B	AB011549	traT	100	423 / 423	contig00107 len=1756 cov=52.3 corr=0 origname=NODE_107_length_1756_cov_52.293694_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00031 len=51407 cov=38.2 corr=0 origname=NODE_31_length_51407_cov_38.215469_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																			enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00090 len=2769 cov=139.2 corr=0 origname=NODE_90_length_2769_cov_139.241972_pilon sw=shovill-spades/1.1.0 date=20231107	246..376	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00040 len=31679 cov=23.3 corr=0 origname=NODE_40_length_31679_cov_23.272224_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=9309 cov=23.2 corr=0 origname=NODE_61_length_9309_cov_23.241050_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128608	Escherichia_coli	662917684	691	0.5028	128.044 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,toxB,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		128	5520498	5153477	4560100	129.416	107.121	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00072 len=6783 cov=50.5 corr=0 origname=NODE_72_length_6783_cov_50.513897_pilon sw=shovill-spades/1.1.0 date=20231107	503..599	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314455 cov=47.2 corr=0 origname=NODE_2_length_314455_cov_47.195350_pilon sw=shovill-spades/1.1.0 date=20231107	113538..115520	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=145662 cov=44.6 corr=0 origname=NODE_10_length_145662_cov_44.587933_pilon sw=shovill-spades/1.1.0 date=20231107	135945..138749		44	ehxA	100	2997 / 2997	contig00042 len=31636 cov=30.7 corr=0 origname=NODE_42_length_31636_cov_30.673641_pilon sw=shovill-spades/1.1.0 date=20231107	17465..20461	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=145662 cov=44.6 corr=0 origname=NODE_10_length_145662_cov_44.587933_pilon sw=shovill-spades/1.1.0 date=20231107	141490..142068	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=145662 cov=44.6 corr=0 origname=NODE_10_length_145662_cov_44.587933_pilon sw=shovill-spades/1.1.0 date=20231107	143226..144164	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=54919 cov=40.4 corr=0 origname=NODE_31_length_54919_cov_40.406453_pilon sw=shovill-spades/1.1.0 date=20231107	53557..54210	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00057 len=11475 cov=20.0 corr=0 origname=NODE_57_length_11475_cov_19.996926_pilon sw=shovill-spades/1.1.0 date=20231107	170..4072	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=252965 cov=43.0 corr=0 origname=NODE_4_length_252965_cov_42.996429_pilon sw=shovill-spades/1.1.0 date=20231107	106591..107160			etpD	100	1758 / 1758	contig00042 len=31636 cov=30.7 corr=0 origname=NODE_42_length_31636_cov_30.673641_pilon sw=shovill-spades/1.1.0 date=20231107	4528..6285	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00015 len=122006 cov=41.9 corr=0 origname=NODE_15_length_122006_cov_41.936718_pilon sw=shovill-spades/1.1.0 date=20231107	53275..53763	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314455 cov=47.2 corr=0 origname=NODE_2_length_314455_cov_47.195350_pilon sw=shovill-spades/1.1.0 date=20231107	95268..96668	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=17289 cov=38.5 corr=0 origname=NODE_52_length_17289_cov_38.453657_pilon sw=shovill-spades/1.1.0 date=20231107	9956..10873	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=47583 cov=32.8 corr=0 origname=NODE_34_length_47583_cov_32.796934_pilon sw=shovill-spades/1.1.0 date=20231107	11529..13619	Adherence protein	AE005174	iss	97.96	294 / 294	contig00001 len=435225 cov=44.6 corr=0 origname=NODE_1_length_435225_cov_44.589386_pilon sw=shovill-spades/1.1.0 date=20231107	3663..3956	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00164 len=599 cov=32.2 corr=0 origname=NODE_164_length_599_cov_32.236220_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=69674 cov=51.9 corr=0 origname=NODE_25_length_69674_cov_51.856962_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=69674 cov=51.9 corr=0 origname=NODE_25_length_69674_cov_51.856962_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00036 len=44916 cov=25.0 corr=0 origname=NODE_36_length_44916_cov_24.959130_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00072 len=6783 cov=50.5 corr=0 origname=NODE_72_length_6783_cov_50.513897_pilon sw=shovill-spades/1.1.0 date=20231107	4392..5717	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00012 len=139090 cov=41.5 corr=0 origname=NODE_12_length_139090_cov_41.533105_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15107 cov=47.6 corr=0 origname=NODE_54_length_15107_cov_47.607152_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00012 len=139090 cov=41.5 corr=0 origname=NODE_12_length_139090_cov_41.533105_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00008 len=155580 cov=33.9 corr=0 origname=NODE_8_length_155580_cov_33.868505_pilon sw=shovill-spades/1.1.0 date=20231107	479..1465	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00014 len=124332 cov=39.5 corr=0 origname=NODE_14_length_124332_cov_39.474296_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00082 len=4269 cov=49.1 corr=0 origname=NODE_82_length_4269_cov_49.137147_pilon sw=shovill-spades/1.1.0 date=20231107	1292..2245	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00026 len=67894 cov=40.4 corr=0 origname=NODE_26_length_67894_cov_40.399658_pilon sw=shovill-spades/1.1.0 date=20231107	66166..67392	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00034 len=47583 cov=32.8 corr=0 origname=NODE_34_length_47583_cov_32.796934_pilon sw=shovill-spades/1.1.0 date=20231107	16213..17253	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183583 cov=41.4 corr=0 origname=NODE_7_length_183583_cov_41.397527_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00028 len=60043 cov=44.1 corr=0 origname=NODE_28_length_60043_cov_44.050657_pilon sw=shovill-spades/1.1.0 date=20231107	4959..5922	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00010 len=145662 cov=44.6 corr=0 origname=NODE_10_length_145662_cov_44.587933_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00010 len=145662 cov=44.6 corr=0 origname=NODE_10_length_145662_cov_44.587933_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AF125993	toxB	99.95	9510 / 9510	contig00036 len=44916 cov=25.0 corr=0 origname=NODE_36_length_44916_cov_24.959130_pilon sw=shovill-spades/1.1.0 date=20231107	14189..23698	Toxin B	AB011549	traT	100	423 / 423	contig00034 len=47583 cov=32.8 corr=0 origname=NODE_34_length_47583_cov_32.796934_pilon sw=shovill-spades/1.1.0 date=20231107	45752..46174	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=47583 cov=32.8 corr=0 origname=NODE_34_length_47583_cov_32.796934_pilon sw=shovill-spades/1.1.0 date=20231107	35820..35948	Outer membrane protein complement resistance	AMTE01000156																																				aph(6)-Id	100	837/837	contig00078 len=5154 cov=38.7 corr=0 origname=NODE_78_length_5154_cov_38.740865_pilon sw=shovill-spades/1.1.0 date=20231107	3219..4055	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00078 len=5154 cov=38.7 corr=0 origname=NODE_78_length_5154_cov_38.740865_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4857	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00078 len=5154 cov=38.7 corr=0 origname=NODE_78_length_5154_cov_38.740865_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00078 len=5154 cov=38.7 corr=0 origname=NODE_78_length_5154_cov_38.740865_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00078 len=5154 cov=38.7 corr=0 origname=NODE_78_length_5154_cov_38.740865_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF321550	sul2	100	816/816	contig00078 len=5154 cov=38.7 corr=0 origname=NODE_78_length_5154_cov_38.740865_pilon sw=shovill-spades/1.1.0 date=20231107	1631..2446	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00073 len=6731 cov=27.5 corr=0 origname=NODE_73_length_6731_cov_27.534337_pilon sw=shovill-spades/1.1.0 date=20231107	1328..2533	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31636 cov=30.7 corr=0 origname=NODE_42_length_31636_cov_30.673641_pilon sw=shovill-spades/1.1.0 date=20231107	26569..27250	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00036 len=44916 cov=25.0 corr=0 origname=NODE_36_length_44916_cov_24.959130_pilon sw=shovill-spades/1.1.0 date=20231107	7121..7379	AY458016																												
SAM128609	Escherichia_coli	586114672	722	0.5028	139.09 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,toxB,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		115	5520246	5058736	4048444	117.095	109.123	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00072 len=6783 cov=44.4 corr=0 origname=NODE_72_length_6783_cov_44.391961_pilon sw=shovill-spades/1.1.0 date=20231107	503..599	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314455 cov=41.5 corr=0 origname=NODE_2_length_314455_cov_41.480494_pilon sw=shovill-spades/1.1.0 date=20231107	113538..115520	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145662 cov=42.0 corr=0 origname=NODE_12_length_145662_cov_41.980113_pilon sw=shovill-spades/1.1.0 date=20231107	135945..138749		44	ehxA	100	2997 / 2997	contig00044 len=26048 cov=24.7 corr=0 origname=NODE_44_length_26048_cov_24.674924_pilon sw=shovill-spades/1.1.0 date=20231107	17461..20457	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145662 cov=42.0 corr=0 origname=NODE_12_length_145662_cov_41.980113_pilon sw=shovill-spades/1.1.0 date=20231107	141490..142068	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145662 cov=42.0 corr=0 origname=NODE_12_length_145662_cov_41.980113_pilon sw=shovill-spades/1.1.0 date=20231107	143226..144164	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=54919 cov=37.3 corr=0 origname=NODE_30_length_54919_cov_37.283012_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00057 len=11475 cov=18.0 corr=0 origname=NODE_57_length_11475_cov_18.001581_pilon sw=shovill-spades/1.1.0 date=20231107	170..4072	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=228295 cov=39.7 corr=0 origname=NODE_4_length_228295_cov_39.720426_pilon sw=shovill-spades/1.1.0 date=20231107	80445..81014			etpD	100	1758 / 1758	contig00044 len=26048 cov=24.7 corr=0 origname=NODE_44_length_26048_cov_24.674924_pilon sw=shovill-spades/1.1.0 date=20231107	4524..6281	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00011 len=148675 cov=41.0 corr=0 origname=NODE_11_length_148675_cov_40.987690_pilon sw=shovill-spades/1.1.0 date=20231107	53899..54387	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314455 cov=41.5 corr=0 origname=NODE_2_length_314455_cov_41.480494_pilon sw=shovill-spades/1.1.0 date=20231107	95268..96668	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=17289 cov=33.9 corr=0 origname=NODE_51_length_17289_cov_33.915223_pilon sw=shovill-spades/1.1.0 date=20231107	9956..10873	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=46586 cov=33.9 corr=0 origname=NODE_32_length_46586_cov_33.934552_pilon sw=shovill-spades/1.1.0 date=20231107	11651..13741	Adherence protein	AE005174	iss	97.96	294 / 294	contig00001 len=424761 cov=38.7 corr=0 origname=NODE_1_length_424761_cov_38.731615_pilon sw=shovill-spades/1.1.0 date=20231107	1934..2227	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00179 len=599 cov=34.5 corr=0 origname=NODE_179_length_599_cov_34.525591_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00055 len=15014 cov=51.7 corr=0 origname=NODE_55_length_15014_cov_51.731354_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00055 len=15014 cov=51.7 corr=0 origname=NODE_55_length_15014_cov_51.731354_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00094 len=3658 cov=16.3 corr=0 origname=NODE_94_length_3658_cov_16.282871_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00072 len=6783 cov=44.4 corr=0 origname=NODE_72_length_6783_cov_44.391961_pilon sw=shovill-spades/1.1.0 date=20231107	4392..5717	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00013 len=139090 cov=37.6 corr=0 origname=NODE_13_length_139090_cov_37.624868_pilon sw=shovill-spades/1.1.0 date=20231107	131505..132485	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15107 cov=42.6 corr=0 origname=NODE_54_length_15107_cov_42.562001_pilon sw=shovill-spades/1.1.0 date=20231107	4820..5809	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=139090 cov=37.6 corr=0 origname=NODE_13_length_139090_cov_37.624868_pilon sw=shovill-spades/1.1.0 date=20231107	130452..131444	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00003 len=305186 cov=32.6 corr=0 origname=NODE_3_length_305186_cov_32.574231_pilon sw=shovill-spades/1.1.0 date=20231107	301813..302799	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00015 len=124346 cov=36.1 corr=0 origname=NODE_15_length_124346_cov_36.135528_pilon sw=shovill-spades/1.1.0 date=20231107	16126..17010	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00085 len=4269 cov=45.1 corr=0 origname=NODE_85_length_4269_cov_45.052178_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00024 len=67894 cov=38.2 corr=0 origname=NODE_24_length_67894_cov_38.165833_pilon sw=shovill-spades/1.1.0 date=20231107	503..1729	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00032 len=46586 cov=33.9 corr=0 origname=NODE_32_length_46586_cov_33.934552_pilon sw=shovill-spades/1.1.0 date=20231107	16335..17375	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183693 cov=38.3 corr=0 origname=NODE_7_length_183693_cov_38.310073_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00028 len=62143 cov=40.0 corr=0 origname=NODE_28_length_62143_cov_39.968784_pilon sw=shovill-spades/1.1.0 date=20231107	7059..8022	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00012 len=145662 cov=42.0 corr=0 origname=NODE_12_length_145662_cov_41.980113_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00012 len=145662 cov=42.0 corr=0 origname=NODE_12_length_145662_cov_41.980113_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AF125993	toxB	99.94	9510 / 9510	contig00050 len=18947 cov=13.5 corr=0 origname=NODE_50_length_18947_cov_13.536169_pilon sw=shovill-spades/1.1.0 date=20231107	8503..18012	Toxin B	AB011549	traT	100	423 / 423	contig00032 len=46586 cov=33.9 corr=0 origname=NODE_32_length_46586_cov_33.934552_pilon sw=shovill-spades/1.1.0 date=20231107	45874..46296	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=46586 cov=33.9 corr=0 origname=NODE_32_length_46586_cov_33.934552_pilon sw=shovill-spades/1.1.0 date=20231107	35942..36070	Outer membrane protein complement resistance	AMTE01000156																																				aph(6)-Id	100	837/837	contig00081 len=5152 cov=35.7 corr=0 origname=NODE_81_length_5152_cov_35.681486_pilon sw=shovill-spades/1.1.0 date=20231107	1100..1936	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00081 len=5152 cov=35.7 corr=0 origname=NODE_81_length_5152_cov_35.681486_pilon sw=shovill-spades/1.1.0 date=20231107	298..1100	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00081 len=5152 cov=35.7 corr=0 origname=NODE_81_length_5152_cov_35.681486_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00081 len=5152 cov=35.7 corr=0 origname=NODE_81_length_5152_cov_35.681486_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00081 len=5152 cov=35.7 corr=0 origname=NODE_81_length_5152_cov_35.681486_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321550	sul2	100	816/816	contig00081 len=5152 cov=35.7 corr=0 origname=NODE_81_length_5152_cov_35.681486_pilon sw=shovill-spades/1.1.0 date=20231107	2709..3524	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00073 len=6731 cov=20.8 corr=0 origname=NODE_73_length_6731_cov_20.756325_pilon sw=shovill-spades/1.1.0 date=20231107	1328..2533	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00077 len=5669 cov=17.2 corr=0 origname=NODE_77_length_5669_cov_17.245428_pilon sw=shovill-spades/1.1.0 date=20231107	602..1283	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=9354 cov=24.9 corr=0 origname=NODE_62_length_9354_cov_24.852532_pilon sw=shovill-spades/1.1.0 date=20231107	3048..3306	AY458016																												
SAM128610	Escherichia_coli	578644638	719	0.5024	127.156 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_222.208_Circ,	118	5479964	4901114	3988516	119.007	111.81	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00072 len=7013 cov=85.3 corr=0 origname=NODE_72_length_7013_cov_85.324039_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314531 cov=41.7 corr=0 origname=NODE_2_length_314531_cov_41.674771_pilon sw=shovill-spades/1.1.0 date=20231107	198820..200802	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=145661 cov=33.6 corr=0 origname=NODE_10_length_145661_cov_33.598173_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00039 len=31418 cov=13.1 corr=1 origname=NODE_39_length_31418_cov_13.082612_pilon sw=shovill-spades/1.1.0 date=20231107	17246..20242	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=145661 cov=33.6 corr=0 origname=NODE_10_length_145661_cov_33.598173_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=145661 cov=33.6 corr=0 origname=NODE_10_length_145661_cov_33.598173_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00038 len=33840 cov=33.3 corr=0 origname=NODE_38_length_33840_cov_33.347684_pilon sw=shovill-spades/1.1.0 date=20231107	32478..33131	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00001 len=613794 cov=38.0 corr=0 origname=NODE_1_length_613794_cov_38.033339_pilon sw=shovill-spades/1.1.0 date=20231107	467419..467988			etpD	100	1758 / 1758	contig00039 len=31418 cov=13.1 corr=1 origname=NODE_39_length_31418_cov_13.082612_pilon sw=shovill-spades/1.1.0 date=20231107	4309..6066	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=613794 cov=38.0 corr=0 origname=NODE_1_length_613794_cov_38.033339_pilon sw=shovill-spades/1.1.0 date=20231107	292096..292584	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314531 cov=41.7 corr=0 origname=NODE_2_length_314531_cov_41.674771_pilon sw=shovill-spades/1.1.0 date=20231107	217672..219072	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00003 len=248202 cov=35.2 corr=0 origname=NODE_3_length_248202_cov_35.174535_pilon sw=shovill-spades/1.1.0 date=20231107	183157..184557	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00044 len=21369 cov=37.0 corr=0 origname=NODE_44_length_21369_cov_37.001410_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00030 len=51407 cov=32.2 corr=0 origname=NODE_30_length_51407_cov_32.175111_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00047 len=18951 cov=36.8 corr=1 origname=NODE_47_length_18951_cov_36.828950_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00054 len=14487 cov=60.6 corr=0 origname=NODE_54_length_14487_cov_60.636705_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=40.8 corr=0 origname=NODE_23_length_78936_cov_40.800647_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=40.8 corr=0 origname=NODE_23_length_78936_cov_40.800647_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00085 len=3658 cov=11.1 corr=0 origname=NODE_85_length_3658_cov_11.114662_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00072 len=7013 cov=85.3 corr=0 origname=NODE_72_length_7013_cov_85.324039_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00012 len=128224 cov=36.6 corr=0 origname=NODE_12_length_128224_cov_36.602717_pilon sw=shovill-spades/1.1.0 date=20231107	120639..121619	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15109 cov=36.8 corr=0 origname=NODE_52_length_15109_cov_36.809296_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00012 len=128224 cov=36.6 corr=0 origname=NODE_12_length_128224_cov_36.602717_pilon sw=shovill-spades/1.1.0 date=20231107	119586..120578	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=36.3 corr=0 origname=NODE_14_length_124410_cov_36.304740_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00044 len=21369 cov=37.0 corr=0 origname=NODE_44_length_21369_cov_37.001410_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00086 len=3515 cov=55.5 corr=0 origname=NODE_86_length_3515_cov_55.535631_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00084 len=3857 cov=52.0 corr=0 origname=NODE_84_length_3857_cov_51.957249_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00030 len=51407 cov=32.2 corr=0 origname=NODE_30_length_51407_cov_32.175111_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183917 cov=37.4 corr=0 origname=NODE_7_length_183917_cov_37.358796_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00027 len=60183 cov=40.8 corr=0 origname=NODE_27_length_60183_cov_40.782251_pilon sw=shovill-spades/1.1.0 date=20231107	4958..5921	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=145661 cov=33.6 corr=0 origname=NODE_10_length_145661_cov_33.598173_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.9	7831 / 9510	contig00066 len=8774 cov=5.0 corr=1 origname=NODE_66_length_8774_cov_4.961764_pilon sw=shovill-spades/1.1.0 date=20231107	944..8774	Toxin B	AB011549	traT	100	423 / 423	contig00116 len=1756 cov=38.7 corr=0 origname=NODE_116_length_1756_cov_38.670270_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00030 len=51407 cov=32.2 corr=0 origname=NODE_30_length_51407_cov_32.175111_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00096 len=2769 cov=103.4 corr=0 origname=NODE_96_length_2769_cov_103.441748_pilon sw=shovill-spades/1.1.0 date=20231107	1847..1977	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00039 len=31418 cov=13.1 corr=1 origname=NODE_39_length_31418_cov_13.082612_pilon sw=shovill-spades/1.1.0 date=20231107	26350..27031	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=9309 cov=15.9 corr=0 origname=NODE_61_length_9309_cov_15.864396_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128611	Escherichia_coli	611629018	449	0.5025	143.039 KB	12	adk_52,fumC_116,gyrB_55,icd_101,mdh_113,purA_40,recA_38	770	45:1:1	F	FimH552	25	AslA,astA,chuA,csgA,eilA,eilA,eltIIAB-a,epeA,estap-STa4,faeD,fimH,gad,gad,hlyE,iha,iss,katP,kpsE,kpsMII,nleB,nlpI,terC,terC,traT,traT,yehA,yehB,yehC,yehD	4	aph(3'')-Ib,blaCMY-2,sul2,tet(A)	1	parE_p.I355T	5	Col(pHAD28),IncFIB(AP001918),IncFII(pSE11),IncQ1,IncX4	1	Contig_1_218.18_Circ,	119	5660734	5125521	4215218	120.267	110.442	adk	100	100	adk_52	fumC	100	100	fumC_116	gyrB	100	100	gyrB_55	icd	100	100	icd_101	mdh	100	100	mdh_113	purA	100	100	purA_40	recA	100	100	recA_38	45	1	1	H_fliC	97.42	1707 / 1707	O1_wzx	99.06	1278 / 1278	O2_wzy	98.92	1020 / 1020	AslA	97.64	1656 / 1656	contig00019 len=96989 cov=42.0 corr=0 origname=NODE_19_length_96989_cov_41.978276_pilon sw=shovill-spades/1.1.0 date=20231107	57846..59501		CP022686	astA	100	117 / 117	contig00033 len=47513 cov=31.0 corr=0 origname=NODE_33_length_47513_cov_30.973451_pilon sw=shovill-spades/1.1.0 date=20231107	46469..46585	Heat-stable enterotoxin EAST-1	AB042002	chuA	98.79	1983 / 1983	contig00044 len=30171 cov=37.6 corr=0 origname=NODE_44_length_30171_cov_37.554621_pilon sw=shovill-spades/1.1.0 date=20231107	5984..7966	Outer membrane hemin receptor	UCZM01000007	csgA	95.39	456 / 456	contig00027 len=76815 cov=33.6 corr=0 origname=NODE_27_length_76815_cov_33.571764_pilon sw=shovill-spades/1.1.0 date=20231107	54522..54977	curlin major subunit CsgA	CP069646	eilA	98.12	1698 / 1698	contig00022 len=80123 cov=47.4 corr=0 origname=NODE_22_length_80123_cov_47.387395_pilon sw=shovill-spades/1.1.0 date=20231107	2526..4223	Salmonella HilA homolog	CP000970	eilA	98.12	1698 / 1698	contig00022 len=80123 cov=47.4 corr=0 origname=NODE_22_length_80123_cov_47.387395_pilon sw=shovill-spades/1.1.0 date=20231107	2526..4223	Salmonella HilA homolog	CP003034	eltIIAB-a	98.6	1141 / 1141	contig00010 len=152123 cov=31.9 corr=0 origname=NODE_10_length_152123_cov_31.873777_pilon sw=shovill-spades/1.1.0 date=20231107	24701..25841	Heat-labile enterotoxin LTII-a	JQ031711	epeA	99.88	3415 / 4080	contig00081 len=3699 cov=35.5 corr=0 origname=NODE_81_length_3699_cov_35.538525_pilon sw=shovill-spades/1.1.0 date=20231107	285..3699	Serine protease autotransporters of Enterobacteriaceae (SPATE)	AY258503	estap-STa4	100	219 / 219	contig00205 len=509 cov=31.1 corr=0 origname=NODE_348_length_509_cov_31.119617_pilon sw=shovill-spades/1.1.0 date=20231107	5..223	Heat-stable enterotoxin STa4 porcine variant	KT992796	faeD	96.16	2445 / 2445	contig00035 len=37349 cov=53.5 corr=0 origname=NODE_35_length_37349_cov_53.524049_pilon sw=shovill-spades/1.1.0 date=20231107	31126..33570	F4 (K88) Usher	CP057646	fimH	100	489 / 489	contig00024 len=79578 cov=39.0 corr=0 origname=NODE_24_length_79578_cov_39.041428_pilon sw=shovill-spades/1.1.0 date=20231107	5966..6454	Type 1 fimbriae		gad	98.72	1401 / 1401	contig00006 len=204049 cov=34.1 corr=0 origname=NODE_6_length_204049_cov_34.050721_pilon sw=shovill-spades/1.1.0 date=20231107	118988..120388	Glutamate decarboxylase	CP002167	gad	96.57	1401 / 1401	contig00017 len=114950 cov=44.5 corr=0 origname=NODE_17_length_114950_cov_44.454270_pilon sw=shovill-spades/1.1.0 date=20231107	11065..12465	Glutamate decarboxylase	CU928163	hlyE	98.15	918 / 918	contig00062 len=12009 cov=25.9 corr=0 origname=NODE_62_length_12009_cov_25.895368_pilon sw=shovill-spades/1.1.0 date=20231107	5392..6309	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00043 len=32068 cov=29.8 corr=0 origname=NODE_43_length_32068_cov_29.823811_pilon sw=shovill-spades/1.1.0 date=20231107	22405..24495	Adherence protein	AE005174	iss	99.66	294 / 294	contig00032 len=47739 cov=43.8 corr=0 origname=NODE_32_length_47739_cov_43.817768_pilon sw=shovill-spades/1.1.0 date=20231107	1378..1671	Increased serum survival	CP001665	katP	99.73	2211 / 2211	contig00058 len=14882 cov=24.4 corr=0 origname=NODE_58_length_14882_cov_24.419918_pilon sw=shovill-spades/1.1.0 date=20231107	11828..14038	Plasmid-encoded catalase peroxidase	AB011549	kpsE	99.39	1149 / 1149	contig00002 len=347104 cov=39.4 corr=0 origname=NODE_2_length_347104_cov_39.396469_pilon sw=shovill-spades/1.1.0 date=20231107	3269..4417	Capsule polysaccharide export inner-membrane protein	MG739438	kpsMII	98.58	777 / 777	contig00002 len=347104 cov=39.4 corr=0 origname=NODE_2_length_347104_cov_39.396469_pilon sw=shovill-spades/1.1.0 date=20231107	16072..16848	Polysialic acid transport protein; Group 2 capsule	QMGM01000001	nleB	99.8	981 / 981	contig00088 len=3092 cov=8.5 corr=3 origname=NODE_88_length_3092_cov_8.497168_pilon sw=shovill-spades/1.1.0 date=20231107	1860..2839	Non-LEE encoded effector B	AE005174	nlpI	99.44	885 / 885	contig00002 len=347104 cov=39.4 corr=0 origname=NODE_2_length_347104_cov_39.396469_pilon sw=shovill-spades/1.1.0 date=20231107	221314..222198	lipoprotein NlpI precursor	CP000243	terC	100	1041 / 1041	contig00043 len=32068 cov=29.8 corr=0 origname=NODE_43_length_32068_cov_29.823811_pilon sw=shovill-spades/1.1.0 date=20231107	18770..19810	Tellurium ion resistance protein	AE005174	terC	97.9	714 / 714	contig00031 len=54234 cov=40.8 corr=0 origname=NODE_31_length_54234_cov_40.753246_pilon sw=shovill-spades/1.1.0 date=20231107	28494..29207	Tellurium ion resistance protein	CP000468	traT	100	117 / 129	contig00043 len=32068 cov=29.8 corr=0 origname=NODE_43_length_32068_cov_29.823811_pilon sw=shovill-spades/1.1.0 date=20231107	91..207	Outer membrane protein complement resistance	AMTE01000156	traT	96.19	735 / 735	contig00038 len=36876 cov=42.2 corr=0 origname=NODE_38_length_36876_cov_42.197445_pilon sw=shovill-spades/1.1.0 date=20231107	20210..20944	Outer membrane protein complement resistance	NZ_UIMJ01000043	yehA	97.29	1035 / 1035	contig00001 len=601724 cov=39.3 corr=0 origname=NODE_1_length_601724_cov_39.311605_pilon sw=shovill-spades/1.1.0 date=20231107	36083..37117	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	yehB	97.38	2481 / 2481	contig00001 len=601724 cov=39.3 corr=0 origname=NODE_1_length_601724_cov_39.311605_pilon sw=shovill-spades/1.1.0 date=20231107	37133..39613	Usher, YHD fimbriael cluster	CP042934	yehC	96.59	675 / 675	contig00001 len=601724 cov=39.3 corr=0 origname=NODE_1_length_601724_cov_39.311605_pilon sw=shovill-spades/1.1.0 date=20231107	39629..40303	Chaperone, YHD fimbriael cluster	CP042934	yehD	97.42	543 / 543	contig00001 len=601724 cov=39.3 corr=0 origname=NODE_1_length_601724_cov_39.311605_pilon sw=shovill-spades/1.1.0 date=20231107	40384..40926	Major pilin subunit, YHD fimbriael cluster	CP042934																																																																														aph(3'')-Ib	100	695/804	contig00063 len=9564 cov=100.2 corr=0 origname=NODE_63_length_9564_cov_100.233084_pilon sw=shovill-spades/1.1.0 date=20231107	4740..5434	Streptomycin	AF321551	blaCMY-2	100	1146/1146	contig00036 len=37000 cov=24.7 corr=0 origname=NODE_36_length_37000_cov_24.736297_pilon sw=shovill-spades/1.1.0 date=20231107	14139..15284	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefotaxime, Cefoxitin, Ceftazidime, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid	X91840	sul2	100	816/816	contig00063 len=9564 cov=100.2 corr=0 origname=NODE_63_length_9564_cov_100.233084_pilon sw=shovill-spades/1.1.0 date=20231107	3864..4679	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	contig00063 len=9564 cov=100.2 corr=0 origname=NODE_63_length_9564_cov_100.233084_pilon sw=shovill-spades/1.1.0 date=20231107	6335..7534	Doxycycline, Tetracycline	AJ517790																						parE p.I355T	ATC -> ACC	I -> T	Nalidixic Acid, Ciprofloxacin	28598203	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00152 len=837 cov=5.2 corr=0 origname=NODE_194_length_837_cov_5.152815_pilon sw=shovill-spades/1.1.0 date=20231107	629..759	KU674895	enterobacteriales	IncFIB(AP001918)	98.09	682 / 682	contig00033 len=47513 cov=31.0 corr=0 origname=NODE_33_length_47513_cov_30.973451_pilon sw=shovill-spades/1.1.0 date=20231107	4412..5093	AP001918	enterobacteriales	IncFII(pSE11)	92.42	264 / 264	contig00038 len=36876 cov=42.2 corr=0 origname=NODE_38_length_36876_cov_42.197445_pilon sw=shovill-spades/1.1.0 date=20231107	5141..5399	AP009242	enterobacteriales	IncQ1	100	796 / 796	contig00063 len=9564 cov=100.2 corr=0 origname=NODE_63_length_9564_cov_100.233084_pilon sw=shovill-spades/1.1.0 date=20231107	1729..2524	M28829	enterobacteriales	IncX4	98.88	712 / 712	contig00036 len=37000 cov=24.7 corr=0 origname=NODE_36_length_37000_cov_24.736297_pilon sw=shovill-spades/1.1.0 date=20231107	18590..19301	FN543504							
SAM128612	Escherichia_coli	578650930	793	0.503	92.29 KB	18	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	0		127	5464689	4555765	3999982	128.42	119.951	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00093 len=5109 cov=27.9 corr=0 origname=NODE_93_length_5109_cov_27.855719_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=43.7 corr=0 origname=NODE_1_length_314655_cov_43.684789_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00054 len=26751 cov=20.8 corr=0 origname=NODE_54_length_26751_cov_20.784359_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	99.93	2997 / 2997	contig00057 len=23769 cov=20.6 corr=0 origname=NODE_57_length_23769_cov_20.571881_pilon sw=shovill-spades/1.1.0 date=20231107	17174..20170	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00054 len=26751 cov=20.8 corr=0 origname=NODE_54_length_26751_cov_20.784359_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00054 len=26751 cov=20.8 corr=0 origname=NODE_54_length_26751_cov_20.784359_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00048 len=34478 cov=33.4 corr=0 origname=NODE_48_length_34478_cov_33.442580_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.87	3903 / 3903	contig00068 len=11488 cov=13.2 corr=1 origname=NODE_68_length_11488_cov_13.151882_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=252995 cov=40.5 corr=0 origname=NODE_2_length_252995_cov_40.477244_pilon sw=shovill-spades/1.1.0 date=20231107	145807..146376			etpD	100	1758 / 1758	contig00057 len=23769 cov=20.6 corr=0 origname=NODE_57_length_23769_cov_20.571881_pilon sw=shovill-spades/1.1.0 date=20231107	4237..5994	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=191352 cov=34.5 corr=0 origname=NODE_4_length_191352_cov_34.476093_pilon sw=shovill-spades/1.1.0 date=20231107	68212..68700	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=43.7 corr=0 origname=NODE_1_length_314655_cov_43.684789_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00059 len=21369 cov=35.5 corr=0 origname=NODE_59_length_21369_cov_35.485384_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=26.1 corr=0 origname=NODE_32_length_51407_cov_26.141048_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00077 len=8866 cov=52.8 corr=0 origname=NODE_77_length_8866_cov_52.811624_pilon sw=shovill-spades/1.1.0 date=20231107	5272..5565	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00083 len=7178 cov=45.2 corr=0 origname=NODE_83_length_7178_cov_45.247778_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78937 cov=42.6 corr=0 origname=NODE_23_length_78937_cov_42.640388_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78937 cov=42.6 corr=0 origname=NODE_23_length_78937_cov_42.640388_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00105 len=3662 cov=11.2 corr=0 origname=NODE_105_length_3662_cov_11.161859_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00093 len=5109 cov=27.9 corr=0 origname=NODE_93_length_5109_cov_27.855719_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00010 len=128075 cov=35.9 corr=0 origname=NODE_10_length_128075_cov_35.894643_pilon sw=shovill-spades/1.1.0 date=20231107	120667..121647	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00063 len=15110 cov=23.5 corr=0 origname=NODE_63_length_15110_cov_23.525335_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00010 len=128075 cov=35.9 corr=0 origname=NODE_10_length_128075_cov_35.894643_pilon sw=shovill-spades/1.1.0 date=20231107	119614..120606	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00013 len=124333 cov=38.0 corr=0 origname=NODE_13_length_124333_cov_37.999839_pilon sw=shovill-spades/1.1.0 date=20231107	107338..108222	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00059 len=21369 cov=35.5 corr=0 origname=NODE_59_length_21369_cov_35.485384_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00128 len=2397 cov=28.3 corr=0 origname=NODE_128_length_2397_cov_28.331743_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00098 len=4514 cov=61.4 corr=0 origname=NODE_98_length_4514_cov_61.356545_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=26.1 corr=0 origname=NODE_32_length_51407_cov_26.141048_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00043 len=40237 cov=41.0 corr=0 origname=NODE_43_length_40237_cov_41.030414_pilon sw=shovill-spades/1.1.0 date=20231107	16700..17413	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00007 len=160495 cov=40.9 corr=0 origname=NODE_7_length_160495_cov_40.931772_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00054 len=26751 cov=20.8 corr=0 origname=NODE_54_length_26751_cov_20.784359_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00145 len=1756 cov=20.9 corr=0 origname=NODE_145_length_1756_cov_20.915916_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=26.1 corr=0 origname=NODE_32_length_51407_cov_26.141048_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00119 len=2849 cov=64.6 corr=0 origname=NODE_119_length_2849_cov_64.560914_pilon sw=shovill-spades/1.1.0 date=20231107	2393..2523	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00081 len=7323 cov=13.6 corr=0 origname=NODE_81_length_7323_cov_13.594994_pilon sw=shovill-spades/1.1.0 date=20231107	2255..2936	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00071 len=10339 cov=21.1 corr=0 origname=NODE_71_length_10339_cov_21.069184_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128613	Escherichia_coli	534820572	614	0.5036	148.3 KB	12	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx2a-O157-EDL933,terC,terC,terC,tir,toxB,traT,traT	0		0		2	IncFIB(AP001918),IncFII	0		110	5426946	4860472	3697950	111.307	111.654	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00061 len=6783 cov=37.1 corr=0 origname=NODE_61_length_6783_cov_37.096533_pilon sw=shovill-spades/1.1.0 date=20231107	6185..6281	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314036 cov=42.5 corr=0 origname=NODE_3_length_314036_cov_42.477705_pilon sw=shovill-spades/1.1.0 date=20231107	113528..115510	Outer membrane hemin receptor	JH959976	eae-g01-gamma	100	2805 / 2805	contig00013 len=145652 cov=38.5 corr=0 origname=NODE_13_length_145652_cov_38.457787_pilon sw=shovill-spades/1.1.0 date=20231107	135935..138739		44	ehxA	100	2997 / 2997	contig00036 len=42994 cov=20.4 corr=1 origname=NODE_36_length_42994_cov_20.400065_pilon sw=shovill-spades/1.1.0 date=20231107	28822..31818	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145652 cov=38.5 corr=0 origname=NODE_13_length_145652_cov_38.457787_pilon sw=shovill-spades/1.1.0 date=20231107	141480..142058	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145652 cov=38.5 corr=0 origname=NODE_13_length_145652_cov_38.457787_pilon sw=shovill-spades/1.1.0 date=20231107	143216..144154	Secreted protein B	AE005174	espJ	100	654 / 654	contig00041 len=34233 cov=32.8 corr=0 origname=NODE_41_length_34233_cov_32.776346_pilon sw=shovill-spades/1.1.0 date=20231107	32489..33142	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00036 len=42994 cov=20.4 corr=1 origname=NODE_36_length_42994_cov_20.400065_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=375142 cov=36.7 corr=1 origname=NODE_1_length_375180_cov_36.724191_pilon sw=shovill-spades/1.1.0 date=20231107	146098..146667			etpD	100	1758 / 1758	contig00036 len=42994 cov=20.4 corr=1 origname=NODE_36_length_42994_cov_20.400065_pilon sw=shovill-spades/1.1.0 date=20231107	15885..17642	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=375142 cov=36.7 corr=1 origname=NODE_1_length_375180_cov_36.724191_pilon sw=shovill-spades/1.1.0 date=20231107	321380..321868	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314036 cov=42.5 corr=0 origname=NODE_3_length_314036_cov_42.477705_pilon sw=shovill-spades/1.1.0 date=20231107	95258..96658	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00046 len=25493 cov=33.9 corr=0 origname=NODE_46_length_25493_cov_33.922408_pilon sw=shovill-spades/1.1.0 date=20231107	18851..19768	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51038 cov=24.7 corr=0 origname=NODE_33_length_51038_cov_24.696096_pilon sw=shovill-spades/1.1.0 date=20231107	32845..34935	Adherence protein	BA000007	iss	97.96	294 / 294	contig00016 len=107036 cov=37.9 corr=0 origname=NODE_16_length_107036_cov_37.928056_pilon sw=shovill-spades/1.1.0 date=20231107	106554..106847	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00032 len=53405 cov=30.4 corr=0 origname=NODE_32_length_53405_cov_30.400383_pilon sw=shovill-spades/1.1.0 date=20231107	1553..1846	Increased serum survival	CP001509	katP	99.95	2211 / 2211	contig00033 len=51038 cov=24.7 corr=0 origname=NODE_33_length_51038_cov_24.696096_pilon sw=shovill-spades/1.1.0 date=20231107	47893..50103	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00061 len=6783 cov=37.1 corr=0 origname=NODE_61_length_6783_cov_37.096533_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00004 len=255128 cov=30.9 corr=0 origname=NODE_4_length_255128_cov_30.901579_pilon sw=shovill-spades/1.1.0 date=20231107	247543..248523	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00050 len=15108 cov=35.8 corr=0 origname=NODE_50_length_15108_cov_35.808750_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	99.8	993 / 993	contig00004 len=255128 cov=30.9 corr=0 origname=NODE_4_length_255128_cov_30.901579_pilon sw=shovill-spades/1.1.0 date=20231107	246490..247482	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00027 len=68052 cov=26.2 corr=0 origname=NODE_27_length_68052_cov_26.237842_pilon sw=shovill-spades/1.1.0 date=20231107	66588..67574	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00015 len=124347 cov=35.2 corr=0 origname=NODE_15_length_124347_cov_35.236705_pilon sw=shovill-spades/1.1.0 date=20231107	16127..17011	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00070 len=4269 cov=32.8 corr=0 origname=NODE_70_length_4269_cov_32.798708_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKX01000238	stx2a-O157-EDL933	100	1241 / 1241	contig00029 len=60712 cov=34.1 corr=0 origname=NODE_29_length_60712_cov_34.075881_pilon sw=shovill-spades/1.1.0 date=20231107	57227..58467	stx2a-O157-EDL933	X07865	terC	100	1041 / 1041	contig00033 len=51038 cov=24.7 corr=0 origname=NODE_33_length_51038_cov_24.696096_pilon sw=shovill-spades/1.1.0 date=20231107	29212..30252	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00018 len=100664 cov=35.3 corr=0 origname=NODE_18_length_100664_cov_35.307607_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00030 len=60056 cov=40.0 corr=0 origname=NODE_30_length_60056_cov_39.988677_pilon sw=shovill-spades/1.1.0 date=20231107	4973..5936	Tellurium ion resistance protein	MG591698	tir	100	1677 / 1677	contig00013 len=145652 cov=38.5 corr=0 origname=NODE_13_length_145652_cov_38.457787_pilon sw=shovill-spades/1.1.0 date=20231107	133591..135267	Translocated intimin receptor protein	AE005174	toxB	99.97	9510 / 9510	contig00043 len=28874 cov=18.1 corr=0 origname=NODE_43_length_28874_cov_18.130424_pilon sw=shovill-spades/1.1.0 date=20231107	10115..19624	Toxin B	AB011549	traT	100	423 / 423	contig00033 len=51038 cov=24.7 corr=0 origname=NODE_33_length_51038_cov_24.696096_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51038 cov=24.7 corr=0 origname=NODE_33_length_51038_cov_24.696096_pilon sw=shovill-spades/1.1.0 date=20231107	10517..10645	Outer membrane protein complement resistance	AMTE01000156																																																																																																															enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00036 len=42994 cov=20.4 corr=1 origname=NODE_36_length_42994_cov_20.400065_pilon sw=shovill-spades/1.1.0 date=20231107	37926..38607	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00043 len=28874 cov=18.1 corr=0 origname=NODE_43_length_28874_cov_18.130424_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																												
SAM128614	Escherichia_coli	630418360	478	0.5032	150.831 KB	13	adk_6,fumC_4,gyrB_7,icd_9,mdh_7,purA_7,recA_56	1080	25:105:105	A	FimH54	17	csgA,fdeC,fimH,hlyE,hra,iss,iss,iss,lpfA,lpfA,nlpI,ompT,ompT,shiB,terC,terC,terC,traJ,traT,yehA,yehB,yehC,yehD	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B)	0		5	IncFIB(AP001918),IncFII(29),IncHI2,IncHI2A,IncI2(Delta)	3	Contig_1_116.589_Circ,,Contig_2_64.0396_Circ,,Contig_3_94.6997_Circ,	124	5562365	5043385	4355884	126.349	110.29	adk	100	100	adk_6	fumC	100	100	fumC_4	gyrB	100	100	gyrB_7	icd	100	100	icd_9	mdh	100	100	mdh_7	purA	100	100	purA_7	recA	100	100	recA_56	25	105	105	H_fliC	97.27	1320 / 1332	O1_wzx	99.65	1428 / 1428	O2_wzy	99.61	1029 / 1029	csgA	99.78	456 / 456	contig00017 len=104278 cov=34.5 corr=0 origname=NODE_17_length_104278_cov_34.518280_pilon sw=shovill-spades/1.1.0 date=20231107	6878..7333	curlin major subunit CsgA	CP069646	fdeC	95.6	4254 / 4254	contig00003 len=339116 cov=46.4 corr=0 origname=NODE_3_length_339116_cov_46.426031_pilon sw=shovill-spades/1.1.0 date=20231107	270279..274532	intimin-like adhesin FdeC	AP010953	fimH	100	489 / 489	contig00006 len=228815 cov=49.4 corr=0 origname=NODE_6_length_228815_cov_49.407316_pilon sw=shovill-spades/1.1.0 date=20231107	5891..6379	Type 1 fimbriae		hlyE	99.35	918 / 918	contig00004 len=252687 cov=32.9 corr=1 origname=NODE_4_length_252687_cov_32.896016_pilon sw=shovill-spades/1.1.0 date=20231107	19759..20676	Avian E. coli haemolysin	ECU57430	hra	98.93	747 / 747	contig00013 len=150831 cov=46.7 corr=0 origname=NODE_13_length_150831_cov_46.665364_pilon sw=shovill-spades/1.1.0 date=20231107	497..1243	Heat-resistant agglutinin	LM995856	iss	99.32	294 / 294	contig00003 len=339116 cov=46.4 corr=0 origname=NODE_3_length_339116_cov_46.426031_pilon sw=shovill-spades/1.1.0 date=20231107	1507..1800	Increased serum survival	CP001509	iss	98.98	294 / 294	contig00005 len=240617 cov=47.9 corr=0 origname=NODE_5_length_240617_cov_47.918213_pilon sw=shovill-spades/1.1.0 date=20231107	1818..2111	Increased serum survival	CP001665	iss	98.98	294 / 294	contig00005 len=240617 cov=47.9 corr=0 origname=NODE_5_length_240617_cov_47.918213_pilon sw=shovill-spades/1.1.0 date=20231107	1818..2111	Increased serum survival	CP001846	lpfA	99.83	573 / 573	contig00024 len=86158 cov=46.3 corr=0 origname=NODE_24_length_86158_cov_46.332346_pilon sw=shovill-spades/1.1.0 date=20231107	55593..56165	Long polar fimbriae	AP010953	lpfA	99.83	573 / 573	contig00024 len=86158 cov=46.3 corr=0 origname=NODE_24_length_86158_cov_46.332346_pilon sw=shovill-spades/1.1.0 date=20231107	55593..56165	Long polar fimbriae	CP002185	nlpI	99.77	885 / 885	contig00009 len=176002 cov=48.2 corr=0 origname=NODE_9_length_176002_cov_48.163873_pilon sw=shovill-spades/1.1.0 date=20231107	67409..68293	lipoprotein NlpI precursor	CP000243	ompT	96.41	948 / 948	contig00052 len=17260 cov=18.8 corr=0 origname=NODE_52_length_17260_cov_18.836857_pilon sw=shovill-spades/1.1.0 date=20231107	12369..13316	Outer membrane protease (protein protease 7)	CDLB01000100	ompT	100	954 / 954	contig00005 len=240617 cov=47.9 corr=0 origname=NODE_5_length_240617_cov_47.918213_pilon sw=shovill-spades/1.1.0 date=20231107	233158..234111	Outer membrane protease (protein protease 7)	JHDO01000060	shiB	96.73	428 / 462	contig00013 len=150831 cov=46.7 corr=0 origname=NODE_13_length_150831_cov_46.665364_pilon sw=shovill-spades/1.1.0 date=20231107	6115..6542	homologs of the Shigella flexneri SHI-2 pathogenicity island gene shiA	AAD44732	terC	100	714 / 714	contig00026 len=68801 cov=39.6 corr=0 origname=NODE_26_length_68801_cov_39.558390_pilon sw=shovill-spades/1.1.0 date=20231107	45161..45874	Tellurium ion resistance protein	CP007491	terC	98.96	966 / 966	contig00054 len=17215 cov=45.0 corr=0 origname=NODE_54_length_17215_cov_44.993868_pilon sw=shovill-spades/1.1.0 date=20231107	7116..8081	Tellurium ion resistance protein	MG591698	terC	100	1041 / 1041	contig00016 len=107986 cov=17.0 corr=1 origname=NODE_16_length_107986_cov_16.972121_pilon sw=shovill-spades/1.1.0 date=20231107	75787..76827	Tellurium ion resistance protein	UGER01000002	traJ	98.84	687 / 687	contig00028 len=58613 cov=24.7 corr=0 origname=NODE_28_length_58613_cov_24.694149_pilon sw=shovill-spades/1.1.0 date=20231107	14771..15457	Protein TraJ (Positive regulator of conjugal transfer operon)	CP007150	traT	100	732 / 732	contig00028 len=58613 cov=24.7 corr=0 origname=NODE_28_length_58613_cov_24.694149_pilon sw=shovill-spades/1.1.0 date=20231107	36442..37173	Outer membrane protein complement resistance	CP010345	yehA	97.29	1035 / 1035	contig00033 len=48988 cov=38.8 corr=0 origname=NODE_33_length_48988_cov_38.756570_pilon sw=shovill-spades/1.1.0 date=20231107	27561..28595	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	yehB	99.03	2482 / 2481	contig00033 len=48988 cov=38.8 corr=0 origname=NODE_33_length_48988_cov_38.756570_pilon sw=shovill-spades/1.1.0 date=20231107	25064..27545	Usher, YHD fimbriael cluster	CP042934	yehC	97.78	675 / 675	contig00033 len=48988 cov=38.8 corr=0 origname=NODE_33_length_48988_cov_38.756570_pilon sw=shovill-spades/1.1.0 date=20231107	24374..25048	Chaperone, YHD fimbriael cluster	CP042934	yehD	98.71	543 / 543	contig00033 len=48988 cov=38.8 corr=0 origname=NODE_33_length_48988_cov_38.756570_pilon sw=shovill-spades/1.1.0 date=20231107	23752..24294	Major pilin subunit, YHD fimbriael cluster	CP042934																																																																																																																								aph(6)-Id	100	837/837	contig00016 len=107986 cov=17.0 corr=1 origname=NODE_16_length_107986_cov_16.972121_pilon sw=shovill-spades/1.1.0 date=20231107	66800..67636	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00016 len=107986 cov=17.0 corr=1 origname=NODE_16_length_107986_cov_16.972121_pilon sw=shovill-spades/1.1.0 date=20231107	65998..66800	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00016 len=107986 cov=17.0 corr=1 origname=NODE_16_length_107986_cov_16.972121_pilon sw=shovill-spades/1.1.0 date=20231107	65997..66800	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00016 len=107986 cov=17.0 corr=1 origname=NODE_16_length_107986_cov_16.972121_pilon sw=shovill-spades/1.1.0 date=20231107	65997..66800	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00016 len=107986 cov=17.0 corr=1 origname=NODE_16_length_107986_cov_16.972121_pilon sw=shovill-spades/1.1.0 date=20231107	65997..66800	Streptomycin	AF321550	tet(B)	100	1206/1206	contig00063 len=7851 cov=9.4 corr=0 origname=NODE_63_length_7851_cov_9.359355_pilon sw=shovill-spades/1.1.0 date=20231107	5359..6564	Doxycycline, Tetracycline, Minocycline	AF326777													enterobacteriales	IncFIB(AP001918)	99.71	682 / 682	contig00052 len=17260 cov=18.8 corr=0 origname=NODE_52_length_17260_cov_18.836857_pilon sw=shovill-spades/1.1.0 date=20231107	7939..8620	AP001918	enterobacteriales	IncFII(29)	96.14	259 / 259	contig00028 len=58613 cov=24.7 corr=0 origname=NODE_28_length_58613_cov_24.694149_pilon sw=shovill-spades/1.1.0 date=20231107	49110..49367	CP003035	enterobacteriales	IncHI2	100	327 / 327	contig00025 len=81693 cov=15.6 corr=0 origname=NODE_25_length_81693_cov_15.586554_pilon sw=shovill-spades/1.1.0 date=20231107	25874..26200	BX664015	enterobacteriales	IncHI2A	99.52	630 / 630	contig00025 len=81693 cov=15.6 corr=0 origname=NODE_25_length_81693_cov_15.586554_pilon sw=shovill-spades/1.1.0 date=20231107	41068..41697	BX664015	enterobacteriales	IncI2(Delta)	98.14	322 / 316	contig00039 len=33930 cov=23.3 corr=0 origname=NODE_39_length_33930_cov_23.280682_pilon sw=shovill-spades/1.1.0 date=20231107	4605..4926	AP002527							
SAM128615	Escherichia_coli	380035942	710	0.5022	124.41 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_127.237_Circ,,Contig_2_82.9147_Circ,	82	5471758	4600406	2618256	83.269	118.94	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00075 len=7013 cov=66.6 corr=0 origname=NODE_75_length_7013_cov_66.646489_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=217542 cov=25.0 corr=0 origname=NODE_2_length_217542_cov_25.007707_pilon sw=shovill-spades/1.1.0 date=20231107	198545..200527	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146585 cov=25.0 corr=0 origname=NODE_12_length_146585_cov_24.977904_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00046 len=31679 cov=17.6 corr=0 origname=NODE_46_length_31679_cov_17.585475_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146585 cov=25.0 corr=0 origname=NODE_12_length_146585_cov_24.977904_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146585 cov=25.0 corr=0 origname=NODE_12_length_146585_cov_24.977904_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56948 cov=21.8 corr=0 origname=NODE_32_length_56948_cov_21.786834_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00064 len=11488 cov=11.7 corr=0 origname=NODE_64_length_11488_cov_11.687462_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=226835 cov=23.9 corr=0 origname=NODE_1_length_226835_cov_23.870127_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00046 len=31679 cov=17.6 corr=0 origname=NODE_46_length_31679_cov_17.585475_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=216971 cov=23.1 corr=0 origname=NODE_3_length_216971_cov_23.083198_pilon sw=shovill-spades/1.1.0 date=20231107	122118..122606	Type 1 fimbriae		hlyE	98.47	918 / 918	contig00053 len=21369 cov=24.3 corr=0 origname=NODE_53_length_21369_cov_24.273240_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00035 len=50999 cov=19.8 corr=0 origname=NODE_35_length_50999_cov_19.769349_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00045 len=33153 cov=25.1 corr=0 origname=NODE_45_length_33153_cov_25.104531_pilon sw=shovill-spades/1.1.0 date=20231107	28868..29161	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00060 len=13960 cov=40.0 corr=0 origname=NODE_60_length_13960_cov_40.036124_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78937 cov=29.4 corr=0 origname=NODE_25_length_78937_cov_29.442064_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78937 cov=29.4 corr=0 origname=NODE_25_length_78937_cov_29.442064_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00090 len=3725 cov=13.7 corr=0 origname=NODE_90_length_3725_cov_13.743533_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00075 len=7013 cov=66.6 corr=0 origname=NODE_75_length_7013_cov_66.646489_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00014 len=128245 cov=23.3 corr=0 origname=NODE_14_length_128245_cov_23.294739_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15109 cov=35.7 corr=0 origname=NODE_58_length_15109_cov_35.656812_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00014 len=128245 cov=23.3 corr=0 origname=NODE_14_length_128245_cov_23.294739_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=21.5 corr=0 origname=NODE_16_length_124410_cov_21.515722_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00053 len=21369 cov=24.3 corr=0 origname=NODE_53_length_21369_cov_24.273240_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00104 len=2397 cov=41.3 corr=0 origname=NODE_104_length_2397_cov_41.289679_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00088 len=3959 cov=32.4 corr=0 origname=NODE_88_length_3959_cov_32.365564_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00035 len=50999 cov=19.8 corr=0 origname=NODE_35_length_50999_cov_19.769349_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183807 cov=23.4 corr=1 origname=NODE_6_length_183807_cov_23.407477_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160521 cov=23.5 corr=0 origname=NODE_9_length_160521_cov_23.545740_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146585 cov=25.0 corr=0 origname=NODE_12_length_146585_cov_24.977904_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00067 len=10445 cov=10.2 corr=0 origname=NODE_67_length_10445_cov_10.246963_pilon sw=shovill-spades/1.1.0 date=20231107	84..9593	Toxin B	AB011549	traT	100	423 / 423	contig00122 len=1756 cov=23.8 corr=0 origname=NODE_122_length_1756_cov_23.806006_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00035 len=50999 cov=19.8 corr=0 origname=NODE_35_length_50999_cov_19.769349_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00096 len=2769 cov=58.8 corr=0 origname=NODE_96_length_2769_cov_58.757282_pilon sw=shovill-spades/1.1.0 date=20231107	874..1004	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00046 len=31679 cov=17.6 corr=0 origname=NODE_46_length_31679_cov_17.585475_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00069 len=9309 cov=14.0 corr=0 origname=NODE_69_length_9309_cov_14.012476_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128616	Escherichia_coli	566106112	772	0.5024	124.617 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_159.122_Circ,,Contig_2_22.2673_Circ,	113	5484952	4975072	3913382	115.081	110.248	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00075 len=5108 cov=48.8 corr=0 origname=NODE_75_length_5108_cov_48.797489_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314665 cov=41.2 corr=0 origname=NODE_2_length_314665_cov_41.243809_pilon sw=shovill-spades/1.1.0 date=20231107	113731..115713	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00009 len=145661 cov=35.4 corr=0 origname=NODE_9_length_145661_cov_35.439596_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00040 len=31678 cov=24.9 corr=0 origname=NODE_40_length_31678_cov_24.899199_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00009 len=145661 cov=35.4 corr=0 origname=NODE_9_length_145661_cov_35.439596_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00009 len=145661 cov=35.4 corr=0 origname=NODE_9_length_145661_cov_35.439596_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=56948 cov=31.8 corr=0 origname=NODE_30_length_56948_cov_31.827216_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.9	3903 / 3903	contig00058 len=11488 cov=19.1 corr=0 origname=NODE_58_length_11488_cov_19.125910_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=615436 cov=38.9 corr=0 origname=NODE_1_length_615436_cov_38.890604_pilon sw=shovill-spades/1.1.0 date=20231107	468005..468574			etpD	100	1758 / 1758	contig00040 len=31678 cov=24.9 corr=0 origname=NODE_40_length_31678_cov_24.899199_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=615436 cov=38.9 corr=0 origname=NODE_1_length_615436_cov_38.890604_pilon sw=shovill-spades/1.1.0 date=20231107	292783..293271	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314665 cov=41.2 corr=0 origname=NODE_2_length_314665_cov_41.243809_pilon sw=shovill-spades/1.1.0 date=20231107	95461..96861	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00047 len=21369 cov=30.3 corr=0 origname=NODE_47_length_21369_cov_30.258060_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=27.9 corr=0 origname=NODE_32_length_51407_cov_27.937914_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00054 len=14784 cov=73.2 corr=0 origname=NODE_54_length_14784_cov_73.157558_pilon sw=shovill-spades/1.1.0 date=20231107	2582..2875	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00071 len=7178 cov=45.4 corr=0 origname=NODE_71_length_7178_cov_45.358826_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78937 cov=44.5 corr=0 origname=NODE_23_length_78937_cov_44.489663_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78937 cov=44.5 corr=0 origname=NODE_23_length_78937_cov_44.489663_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00088 len=3725 cov=17.9 corr=0 origname=NODE_88_length_3725_cov_17.892405_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00075 len=5108 cov=48.8 corr=0 origname=NODE_75_length_5108_cov_48.797489_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=32.3 corr=0 origname=NODE_3_length_244736_cov_32.317252_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15109 cov=37.0 corr=0 origname=NODE_52_length_15109_cov_36.991477_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=32.3 corr=0 origname=NODE_3_length_244736_cov_32.317252_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=34.8 corr=0 origname=NODE_14_length_124410_cov_34.849444_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00047 len=21369 cov=30.3 corr=0 origname=NODE_47_length_21369_cov_30.258060_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00100 len=2568 cov=57.4 corr=0 origname=NODE_100_length_2568_cov_57.442471_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=46.4 corr=0 origname=NODE_83_length_3959_cov_46.372802_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=27.9 corr=0 origname=NODE_32_length_51407_cov_27.937914_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00005 len=183691 cov=35.2 corr=0 origname=NODE_5_length_183691_cov_35.155033_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59943 cov=40.9 corr=0 origname=NODE_28_length_59943_cov_40.937863_pilon sw=shovill-spades/1.1.0 date=20231107	4972..5935	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00009 len=145661 cov=35.4 corr=0 origname=NODE_9_length_145661_cov_35.439596_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00061 len=10445 cov=12.0 corr=0 origname=NODE_61_length_10445_cov_12.008827_pilon sw=shovill-spades/1.1.0 date=20231107	853..10362	Toxin B	AB011549	traT	100	423 / 423	contig00098 len=2682 cov=27.6 corr=0 origname=NODE_98_length_2682_cov_27.602856_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=27.9 corr=0 origname=NODE_32_length_51407_cov_27.937914_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2769 cov=74.1 corr=0 origname=NODE_95_length_2769_cov_74.055639_pilon sw=shovill-spades/1.1.0 date=20231107	326..456	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00040 len=31678 cov=24.9 corr=0 origname=NODE_40_length_31678_cov_24.899199_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=9309 cov=25.3 corr=0 origname=NODE_64_length_9309_cov_25.297353_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128617	Escherichia_coli	610042576	764	0.5024	116.566 KB	17	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	25	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_164.462_Circ,	124	5483147	4904851	4216690	125.788	111.79	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00079 len=5109 cov=66.7 corr=0 origname=NODE_79_length_5109_cov_66.717617_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=43.4 corr=0 origname=NODE_1_length_314655_cov_43.402637_pilon sw=shovill-spades/1.1.0 date=20231107	113730..115712	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00009 len=145661 cov=39.0 corr=0 origname=NODE_9_length_145661_cov_39.020375_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00048 len=29166 cov=11.0 corr=1 origname=NODE_48_length_29166_cov_10.957489_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00009 len=145661 cov=39.0 corr=0 origname=NODE_9_length_145661_cov_39.020375_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00009 len=145661 cov=39.0 corr=0 origname=NODE_9_length_145661_cov_39.020375_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00034 len=56948 cov=33.9 corr=0 origname=NODE_34_length_56948_cov_33.933113_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00002 len=254221 cov=41.6 corr=0 origname=NODE_2_length_254221_cov_41.572085_pilon sw=shovill-spades/1.1.0 date=20231107	106790..107359			etpD	100	1758 / 1758	contig00048 len=29166 cov=11.0 corr=1 origname=NODE_48_length_29166_cov_10.957489_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00018 len=115419 cov=36.1 corr=0 origname=NODE_18_length_115419_cov_36.063202_pilon sw=shovill-spades/1.1.0 date=20231107	68212..68700	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=43.4 corr=0 origname=NODE_1_length_314655_cov_43.402637_pilon sw=shovill-spades/1.1.0 date=20231107	95460..96860	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=48.9 corr=0 origname=NODE_52_length_21369_cov_48.947222_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00044 len=35424 cov=31.8 corr=0 origname=NODE_44_length_35424_cov_31.767922_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00045 len=33255 cov=49.8 corr=0 origname=NODE_45_length_33255_cov_49.811151_pilon sw=shovill-spades/1.1.0 date=20231107	28970..29263	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00059 len=14487 cov=65.3 corr=0 origname=NODE_59_length_14487_cov_65.254029_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=48.1 corr=0 origname=NODE_25_length_78936_cov_48.113755_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=48.1 corr=0 origname=NODE_25_length_78936_cov_48.113755_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00091 len=3658 cov=5.9 corr=0 origname=NODE_91_length_3658_cov_5.899916_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00079 len=5109 cov=66.7 corr=0 origname=NODE_79_length_5109_cov_66.717617_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00012 len=128165 cov=37.6 corr=0 origname=NODE_12_length_128165_cov_37.641340_pilon sw=shovill-spades/1.1.0 date=20231107	120679..121659	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=37.7 corr=0 origname=NODE_56_length_15109_cov_37.730324_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00012 len=128165 cov=37.6 corr=0 origname=NODE_12_length_128165_cov_37.641340_pilon sw=shovill-spades/1.1.0 date=20231107	119626..120618	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=35.9 corr=0 origname=NODE_16_length_124410_cov_35.868677_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=48.9 corr=0 origname=NODE_52_length_21369_cov_48.947222_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00093 len=3506 cov=58.0 corr=0 origname=NODE_93_length_3506_cov_57.973353_pilon sw=shovill-spades/1.1.0 date=20231107	922..2148	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00087 len=3959 cov=61.3 corr=0 origname=NODE_87_length_3959_cov_61.252844_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00044 len=35424 cov=31.8 corr=0 origname=NODE_44_length_35424_cov_31.767922_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00005 len=183691 cov=38.6 corr=0 origname=NODE_5_length_183691_cov_38.584619_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00007 len=160521 cov=40.9 corr=0 origname=NODE_7_length_160521_cov_40.932282_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00009 len=145661 cov=39.0 corr=0 origname=NODE_9_length_145661_cov_39.020375_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00125 len=1756 cov=28.8 corr=0 origname=NODE_125_length_1756_cov_28.773574_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00055 len=15757 cov=28.7 corr=0 origname=NODE_55_length_15757_cov_28.693923_pilon sw=shovill-spades/1.1.0 date=20231107	6684..6812	Outer membrane protein complement resistance	AMTE01000156																																																																																																															enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00101 len=2769 cov=76.4 corr=0 origname=NODE_101_length_2769_cov_76.445108_pilon sw=shovill-spades/1.1.0 date=20231107	321..451	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00048 len=29166 cov=11.0 corr=1 origname=NODE_48_length_29166_cov_10.957489_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=9309 cov=10.9 corr=0 origname=NODE_65_length_9309_cov_10.890974_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128618	Escherichia_coli	683158190	773	0.5024	128.046 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_189.293_Circ,	134	5488180	5097644	4725748	135.628	107.661	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00075 len=5188 cov=69.1 corr=0 origname=NODE_75_length_5188_cov_69.139494_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=48.9 corr=0 origname=NODE_2_length_314496_cov_48.881987_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00058 len=11564 cov=45.5 corr=0 origname=NODE_58_length_11564_cov_45.540399_pilon sw=shovill-spades/1.1.0 date=20231107	1847..4651		44	ehxA	100	2997 / 2997	contig00041 len=31678 cov=20.3 corr=0 origname=NODE_41_length_31678_cov_20.295786_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00058 len=11564 cov=45.5 corr=0 origname=NODE_58_length_11564_cov_45.540399_pilon sw=shovill-spades/1.1.0 date=20231107	7392..7970	Type III secretions system	AE005174	espB	100	939 / 939	contig00058 len=11564 cov=45.5 corr=0 origname=NODE_58_length_11564_cov_45.540399_pilon sw=shovill-spades/1.1.0 date=20231107	9128..10066	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=56948 cov=39.6 corr=0 origname=NODE_31_length_56948_cov_39.559527_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=14.9 corr=0 origname=NODE_59_length_11488_cov_14.887163_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=226631 cov=45.4 corr=0 origname=NODE_4_length_226631_cov_45.366673_pilon sw=shovill-spades/1.1.0 date=20231107	80335..80904			etpD	100	1758 / 1758	contig00041 len=31678 cov=20.3 corr=0 origname=NODE_41_length_31678_cov_20.295786_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=386949 cov=44.8 corr=0 origname=NODE_1_length_386949_cov_44.770590_pilon sw=shovill-spades/1.1.0 date=20231107	292096..292584	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=48.9 corr=0 origname=NODE_2_length_314496_cov_48.881987_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=53.1 corr=0 origname=NODE_49_length_21369_cov_53.115377_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=35.4 corr=0 origname=NODE_33_length_51407_cov_35.369183_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00040 len=33255 cov=57.1 corr=0 origname=NODE_40_length_33255_cov_57.062116_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00056 len=14532 cov=73.0 corr=0 origname=NODE_56_length_14532_cov_73.004432_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=54.5 corr=0 origname=NODE_24_length_78936_cov_54.452673_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=54.5 corr=0 origname=NODE_24_length_78936_cov_54.452673_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00085 len=3658 cov=15.5 corr=0 origname=NODE_85_length_3658_cov_15.528736_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00075 len=5188 cov=69.1 corr=0 origname=NODE_75_length_5188_cov_69.139494_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=36.7 corr=0 origname=NODE_3_length_244736_cov_36.740195_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=51.6 corr=0 origname=NODE_54_length_15109_cov_51.623785_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=36.7 corr=0 origname=NODE_3_length_244736_cov_36.740195_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=40.9 corr=0 origname=NODE_15_length_124410_cov_40.918050_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=53.1 corr=0 origname=NODE_49_length_21369_cov_53.115377_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3446 cov=67.9 corr=0 origname=NODE_87_length_3446_cov_67.914456_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00081 len=3959 cov=65.0 corr=0 origname=NODE_81_length_3959_cov_65.005171_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=35.4 corr=0 origname=NODE_33_length_51407_cov_35.369183_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00019 len=100553 cov=44.5 corr=0 origname=NODE_19_length_100553_cov_44.499662_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160495 cov=45.6 corr=0 origname=NODE_10_length_160495_cov_45.591107_pilon sw=shovill-spades/1.1.0 date=20231107	105524..106487	Tellurium ion resistance protein	MG591698	toxB	99.92	9510 / 9510	contig00048 len=22207 cov=14.8 corr=0 origname=NODE_48_length_22207_cov_14.832248_pilon sw=shovill-spades/1.1.0 date=20231107	11755..21264	Toxin B	AB011549	traT	100	423 / 423	contig00111 len=1756 cov=41.9 corr=0 origname=NODE_111_length_1756_cov_41.872673_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=35.4 corr=0 origname=NODE_33_length_51407_cov_35.369183_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00092 len=2769 cov=88.3 corr=0 origname=NODE_92_length_2769_cov_88.273338_pilon sw=shovill-spades/1.1.0 date=20231107	389..519	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00041 len=31678 cov=20.3 corr=0 origname=NODE_41_length_31678_cov_20.295786_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=9310 cov=20.3 corr=0 origname=NODE_64_length_9310_cov_20.301551_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128619	Escherichia_coli	452517780	773	0.5024	128.029 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_118.482_Circ,	96	5478400	4697809	3119350	97.108	116.616	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00075 len=5108 cov=40.5 corr=0 origname=NODE_75_length_5108_cov_40.510066_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314655 cov=33.2 corr=0 origname=NODE_2_length_314655_cov_33.165038_pilon sw=shovill-spades/1.1.0 date=20231107	113730..115712	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146585 cov=29.5 corr=0 origname=NODE_12_length_146585_cov_29.539599_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00040 len=31679 cov=18.9 corr=0 origname=NODE_40_length_31679_cov_18.866943_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146585 cov=29.5 corr=0 origname=NODE_12_length_146585_cov_29.539599_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146585 cov=29.5 corr=0 origname=NODE_12_length_146585_cov_29.539599_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=65515 cov=25.1 corr=0 origname=NODE_27_length_65515_cov_25.076669_pilon sw=shovill-spades/1.1.0 date=20231107	859..1512	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=12.9 corr=3 origname=NODE_60_length_11488_cov_12.894446_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444172 cov=28.6 corr=0 origname=NODE_1_length_444172_cov_28.622364_pilon sw=shovill-spades/1.1.0 date=20231107	145807..146376			etpD	100	1758 / 1758	contig00040 len=31679 cov=18.9 corr=0 origname=NODE_40_length_31679_cov_18.866943_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444172 cov=28.6 corr=0 origname=NODE_1_length_444172_cov_28.622364_pilon sw=shovill-spades/1.1.0 date=20231107	321110..321598	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314655 cov=33.2 corr=0 origname=NODE_2_length_314655_cov_33.165038_pilon sw=shovill-spades/1.1.0 date=20231107	95460..96860	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=33.1 corr=0 origname=NODE_49_length_21369_cov_33.147664_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=43524 cov=19.8 corr=0 origname=NODE_34_length_43524_cov_19.755992_pilon sw=shovill-spades/1.1.0 date=20231107	31275..33365	Adherence protein	AE005174	iss	98.3	294 / 294	contig00057 len=14667 cov=51.3 corr=0 origname=NODE_57_length_14667_cov_51.260908_pilon sw=shovill-spades/1.1.0 date=20231107	3102..3395	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00070 len=7178 cov=41.1 corr=0 origname=NODE_70_length_7178_cov_41.075067_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=34.5 corr=0 origname=NODE_24_length_78936_cov_34.468045_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=34.5 corr=0 origname=NODE_24_length_78936_cov_34.468045_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00086 len=3690 cov=12.0 corr=0 origname=NODE_86_length_3690_cov_12.016393_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00075 len=5108 cov=40.5 corr=0 origname=NODE_75_length_5108_cov_40.510066_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00013 len=128122 cov=27.4 corr=0 origname=NODE_13_length_128122_cov_27.373089_pilon sw=shovill-spades/1.1.0 date=20231107	6507..7487	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=31.3 corr=0 origname=NODE_55_length_15109_cov_31.329072_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=128122 cov=27.4 corr=0 origname=NODE_13_length_128122_cov_27.373089_pilon sw=shovill-spades/1.1.0 date=20231107	7548..8540	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124411 cov=27.4 corr=0 origname=NODE_15_length_124411_cov_27.443927_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=33.1 corr=0 origname=NODE_49_length_21369_cov_33.147664_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00088 len=3559 cov=46.2 corr=1 origname=NODE_88_length_3559_cov_46.181949_pilon sw=shovill-spades/1.1.0 date=20231107	1472..2698	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00082 len=3959 cov=35.1 corr=0 origname=NODE_82_length_3959_cov_35.069545_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=43524 cov=19.8 corr=0 origname=NODE_34_length_43524_cov_19.755992_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183917 cov=28.7 corr=0 origname=NODE_6_length_183917_cov_28.725621_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160521 cov=30.0 corr=0 origname=NODE_9_length_160521_cov_29.956947_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146585 cov=29.5 corr=0 origname=NODE_12_length_146585_cov_29.539599_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.93	9510 / 9510	contig00051 len=18920 cov=13.7 corr=0 origname=NODE_51_length_18920_cov_13.681874_pilon sw=shovill-spades/1.1.0 date=20231107	175..9684	Toxin B	AB011549	traT	100	423 / 423	contig00122 len=1756 cov=18.6 corr=0 origname=NODE_122_length_1756_cov_18.643844_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=43524 cov=19.8 corr=0 origname=NODE_34_length_43524_cov_19.755992_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=55.1 corr=0 origname=NODE_94_length_2769_cov_55.079164_pilon sw=shovill-spades/1.1.0 date=20231107	341..471	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00040 len=31679 cov=18.9 corr=0 origname=NODE_40_length_31679_cov_18.866943_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=10235 cov=19.6 corr=0 origname=NODE_62_length_10235_cov_19.554515_pilon sw=shovill-spades/1.1.0 date=20231107	3973..4231	AY458016																					
SAM128620	Escherichia_coli	654119180	726	0.5024	146.726 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_123.858_Circ,	128	5481739	5077546	4525724	130.425	107.96	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=60.1 corr=0 origname=NODE_76_length_5109_cov_60.137704_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=48.9 corr=0 origname=NODE_1_length_314655_cov_48.929083_pilon sw=shovill-spades/1.1.0 date=20231107	113730..115712	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00014 len=146726 cov=44.1 corr=0 origname=NODE_14_length_146726_cov_44.057988_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	100	2997 / 2997	contig00042 len=31680 cov=20.5 corr=0 origname=NODE_42_length_31680_cov_20.461490_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00014 len=146726 cov=44.1 corr=0 origname=NODE_14_length_146726_cov_44.057988_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00014 len=146726 cov=44.1 corr=0 origname=NODE_14_length_146726_cov_44.057988_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00029 len=56948 cov=38.3 corr=0 origname=NODE_29_length_56948_cov_38.291626_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=14.5 corr=0 origname=NODE_59_length_11488_cov_14.520576_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=254221 cov=45.2 corr=0 origname=NODE_2_length_254221_cov_45.169992_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00042 len=31680 cov=20.5 corr=0 origname=NODE_42_length_31680_cov_20.461490_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00006 len=191274 cov=40.9 corr=0 origname=NODE_6_length_191274_cov_40.947438_pilon sw=shovill-spades/1.1.0 date=20231107	68212..68700	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=48.9 corr=0 origname=NODE_1_length_314655_cov_48.929083_pilon sw=shovill-spades/1.1.0 date=20231107	95460..96860	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=45.6 corr=0 origname=NODE_49_length_21369_cov_45.622991_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00031 len=51407 cov=31.8 corr=0 origname=NODE_31_length_51407_cov_31.832060_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33879 cov=49.2 corr=1 origname=NODE_41_length_33879_cov_49.227862_pilon sw=shovill-spades/1.1.0 date=20231107	29594..29887	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00056 len=14787 cov=74.4 corr=0 origname=NODE_56_length_14787_cov_74.378674_pilon sw=shovill-spades/1.1.0 date=20231107	11367..11660	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=50.2 corr=0 origname=NODE_23_length_78936_cov_50.221523_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=50.2 corr=0 origname=NODE_23_length_78936_cov_50.221523_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00087 len=3725 cov=15.8 corr=0 origname=NODE_87_length_3725_cov_15.838470_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=60.1 corr=0 origname=NODE_76_length_5109_cov_60.137704_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=36.1 corr=0 origname=NODE_3_length_244736_cov_36.077790_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=43.6 corr=0 origname=NODE_54_length_15109_cov_43.601212_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=36.1 corr=0 origname=NODE_3_length_244736_cov_36.077790_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=39.4 corr=0 origname=NODE_17_length_124410_cov_39.441397_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=45.6 corr=0 origname=NODE_49_length_21369_cov_45.622991_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00089 len=3547 cov=82.5 corr=0 origname=NODE_89_length_3547_cov_82.538484_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00085 len=3959 cov=55.7 corr=0 origname=NODE_85_length_3959_cov_55.701396_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00031 len=51407 cov=31.8 corr=0 origname=NODE_31_length_51407_cov_31.832060_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183801 cov=42.6 corr=0 origname=NODE_7_length_183801_cov_42.630788_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00011 len=160520 cov=45.2 corr=0 origname=NODE_11_length_160520_cov_45.175810_pilon sw=shovill-spades/1.1.0 date=20231107	105549..106512	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00014 len=146726 cov=44.1 corr=0 origname=NODE_14_length_146726_cov_44.057988_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	toxB	99.93	9510 / 9510	contig00061 len=10445 cov=9.2 corr=1 origname=NODE_61_length_10445_cov_9.193812_pilon sw=shovill-spades/1.1.0 date=20231107	853..10362	Toxin B	AB011549	traT	100	423 / 423	contig00115 len=1756 cov=45.6 corr=0 origname=NODE_115_length_1756_cov_45.581982_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00031 len=51407 cov=31.8 corr=0 origname=NODE_31_length_51407_cov_31.832060_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2769 cov=57.8 corr=0 origname=NODE_95_length_2769_cov_57.799477_pilon sw=shovill-spades/1.1.0 date=20231107	1526..1656	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31680 cov=20.5 corr=0 origname=NODE_42_length_31680_cov_20.461490_pilon sw=shovill-spades/1.1.0 date=20231107	26612..27293	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=9309 cov=18.9 corr=0 origname=NODE_64_length_9309_cov_18.896398_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128621	Escherichia_coli	748564388	741	0.5023	127.934 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_271.999_Circ,	144	5484590	5169925	5181752	146.68	106.086	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=70.9 corr=0 origname=NODE_76_length_5109_cov_70.885213_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=55.3 corr=0 origname=NODE_1_length_314496_cov_55.301242_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145661 cov=51.6 corr=0 origname=NODE_12_length_145661_cov_51.594491_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00042 len=31683 cov=35.2 corr=0 origname=NODE_42_length_31683_cov_35.249177_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145661 cov=51.6 corr=0 origname=NODE_12_length_145661_cov_51.594491_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145661 cov=51.6 corr=0 origname=NODE_12_length_145661_cov_51.594491_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=57145 cov=44.8 corr=0 origname=NODE_30_length_57145_cov_44.754601_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=23.5 corr=0 origname=NODE_61_length_11488_cov_23.515574_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=51.7 corr=0 origname=NODE_3_length_227891_cov_51.695808_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00042 len=31683 cov=35.2 corr=0 origname=NODE_42_length_31683_cov_35.249177_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=216971 cov=48.3 corr=0 origname=NODE_4_length_216971_cov_48.270085_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=55.3 corr=0 origname=NODE_1_length_314496_cov_55.301242_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21472 cov=41.0 corr=0 origname=NODE_51_length_21472_cov_40.979608_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00031 len=51407 cov=40.5 corr=0 origname=NODE_31_length_51407_cov_40.505047_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33152 cov=38.8 corr=0 origname=NODE_41_length_33152_cov_38.772118_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00057 len=15139 cov=85.5 corr=0 origname=NODE_57_length_15139_cov_85.548046_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=57.9 corr=0 origname=NODE_25_length_78936_cov_57.937079_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=57.9 corr=0 origname=NODE_25_length_78936_cov_57.937079_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00086 len=3658 cov=29.3 corr=0 origname=NODE_86_length_3658_cov_29.304458_pilon sw=shovill-spades/1.1.0 date=20231107	869..3079	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=70.9 corr=0 origname=NODE_76_length_5109_cov_70.885213_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244738 cov=42.8 corr=0 origname=NODE_2_length_244738_cov_42.798591_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15109 cov=61.2 corr=0 origname=NODE_58_length_15109_cov_61.209748_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244738 cov=42.8 corr=0 origname=NODE_2_length_244738_cov_42.798591_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=47.9 corr=0 origname=NODE_17_length_124410_cov_47.888295_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21472 cov=41.0 corr=0 origname=NODE_51_length_21472_cov_40.979608_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00099 len=2397 cov=68.9 corr=0 origname=NODE_99_length_2397_cov_68.869037_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=56.1 corr=0 origname=NODE_83_length_3959_cov_56.063599_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00031 len=51407 cov=40.5 corr=0 origname=NODE_31_length_51407_cov_40.505047_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183691 cov=50.4 corr=0 origname=NODE_7_length_183691_cov_50.387538_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160521 cov=52.7 corr=0 origname=NODE_10_length_160521_cov_52.686567_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=145661 cov=51.6 corr=0 origname=NODE_12_length_145661_cov_51.594491_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00049 len=22666 cov=25.8 corr=0 origname=NODE_49_length_22666_cov_25.775150_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00095 len=2682 cov=34.8 corr=0 origname=NODE_95_length_2682_cov_34.763026_pilon sw=shovill-spades/1.1.0 date=20231107	1217..1639	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00031 len=51407 cov=40.5 corr=0 origname=NODE_31_length_51407_cov_40.505047_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=126.9 corr=0 origname=NODE_93_length_2769_cov_126.886109_pilon sw=shovill-spades/1.1.0 date=20231107	354..484	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31683 cov=35.2 corr=0 origname=NODE_42_length_31683_cov_35.249177_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=9309 cov=30.3 corr=0 origname=NODE_65_length_9309_cov_30.303103_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128622	Escherichia_coli	81157648	2214	0.5038	3.62 KB	407	adk_12,fumC_12,gyrB_8*,icd_12,No hit found,purA_654?*,No hit found	Unknown	7::157	E	FimH82	19	astA,chuA,ehxA,espA,espJ,espY2:000868321,fimH,gad,hlyE,iha,iss,iss,nleA,nleC,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,tir,traT,traT	0		0		2	Col(pHAD28),IncFII	0		90	4804874	901419	559582	90.776	533.034	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	99.5652173913043	100	gyrB_8*	icd	100	100	icd_12	mdh			No hit found	purA	98.6870897155361	95.6066945606695	purA_654?*	recA			No hit found	7		157	H_fliC	99.2	1758 / 1758	O1_wzx			O2_wzy	99.81	1057 / 1185	astA	100	97 / 117	contig01688 len=568 cov=5.0 corr=0 origname=NODE_1892_length_568_cov_4.979036_pilon sw=shovill-spades/1.1.0 date=20231107	8..104	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00286 len=4325 cov=6.2 corr=2 origname=NODE_286_length_4325_cov_6.203118_pilon sw=shovill-spades/1.1.0 date=20231107	818..2800	Outer membrane hemin receptor	UGGA01000003	ehxA	99.72	2808 / 2997	contig00505 len=3215 cov=4.7 corr=2 origname=NODE_507_length_3215_cov_4.650768_pilon sw=shovill-spades/1.1.0 date=20231107	408..3215	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00557 len=2971 cov=4.7 corr=4 origname=NODE_559_length_2971_cov_4.668056_pilon sw=shovill-spades/1.1.0 date=20231107	1384..1962	Type III secretions system	AE005174	espJ	99.39	654 / 654	contig00290 len=4293 cov=5.2 corr=0 origname=NODE_290_length_4293_cov_5.185626_pilon sw=shovill-spades/1.1.0 date=20231107	947..1600	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00070 len=7870 cov=5.1 corr=6 origname=NODE_70_length_7870_cov_5.125723_pilon sw=shovill-spades/1.1.0 date=20231107	314..883			fimH	100	489 / 489	contig00693 len=2500 cov=5.8 corr=4 origname=NODE_698_length_2500_cov_5.780407_pilon sw=shovill-spades/1.1.0 date=20231107	1583..2071	Type 1 fimbriae		gad	98.64	1401 / 1401	contig00304 len=4189 cov=2.9 corr=5 origname=NODE_304_length_4189_cov_2.895803_pilon sw=shovill-spades/1.1.0 date=20231107	2138..3538	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig01052 len=1580 cov=4.0 corr=1 origname=NODE_1067_length_1580_cov_3.966420_pilon sw=shovill-spades/1.1.0 date=20231107	563..1480	Avian E. coli haemolysin	ECU57430	iha	99.94	1779 / 2091	contig00499 len=3233 cov=11.5 corr=1 origname=NODE_500_length_3233_cov_11.545831_pilon sw=shovill-spades/1.1.0 date=20231107	7..1785	Adherence protein	AE005174	iss	98.3	294 / 294	contig00360 len=3873 cov=6.3 corr=0 origname=NODE_360_length_3873_cov_6.253305_pilon sw=shovill-spades/1.1.0 date=20231107	1553..1846	Increased serum survival	CP001509	iss	98.79	331 / 342	contig01375 len=1029 cov=6.5 corr=0 origname=NODE_1444_length_1029_cov_6.502132_pilon sw=shovill-spades/1.1.0 date=20231107	699..1029	Increased serum survival	CU928160	nleA	99.77	1326 / 1326	contig00313 len=4137 cov=8.0 corr=4 origname=NODE_313_length_4137_cov_8.045724_pilon sw=shovill-spades/1.1.0 date=20231107	1746..3071	Non-LEE encoded effector A	AE005174	nleC	100	993 / 993	contig01058 len=1570 cov=4.9 corr=1 origname=NODE_1073_length_1570_cov_4.928330_pilon sw=shovill-spades/1.1.0 date=20231107	424..1416	Non-LEE encoded effector C	AE005174	ompT	99.34	752 / 753	contig00384 len=3734 cov=7.5 corr=0 origname=NODE_384_length_3734_cov_7.536371_pilon sw=shovill-spades/1.1.0 date=20231107	186..937	Outer membrane protease (protein protease 7)	CU928162	stx1a-O157-GPU96MM	99.92	1227 / 1227	contig00688 len=2510 cov=8.7 corr=1 origname=NODE_693_length_2510_cov_8.730054_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	99.92	1241 / 1241	contig00670 len=2591 cov=10.9 corr=3 origname=NODE_674_length_2591_cov_10.850800_pilon sw=shovill-spades/1.1.0 date=20231107	1230..2470	stx2c-O157-FLY16	AB015057	terC	95.94	715 / 714	contig00019 len=11444 cov=5.5 corr=13 origname=NODE_19_length_11444_cov_5.451423_pilon sw=shovill-spades/1.1.0 date=20231107	7602..8315	Tellurium ion resistance protein	CP007491	terC	98.44	964 / 966	contig00318 len=4106 cov=3.3 corr=5 origname=NODE_318_length_4106_cov_3.344956_pilon sw=shovill-spades/1.1.0 date=20231107	2060..3023	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00650 len=2663 cov=8.0 corr=1 origname=NODE_653_length_2663_cov_8.013997_pilon sw=shovill-spades/1.1.0 date=20231107	408..2102	Translocated intimin receptor protein	EU871626	traT	99.76	423 / 423	contig00974 len=1756 cov=4.1 corr=1 origname=NODE_985_length_1756_cov_4.061862_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00971 len=1759 cov=2.7 corr=3 origname=NODE_982_length_1759_cov_2.749400_pilon sw=shovill-spades/1.1.0 date=20231107	1145..1273	Outer membrane protein complement resistance	AMTE01000156																																																																																																																																																																																					enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00619 len=2772 cov=11.3 corr=0 origname=NODE_621_length_2772_cov_11.327117_pilon sw=shovill-spades/1.1.0 date=20231107	2389..2519	KU674895	enterobacteriales	IncFII	96.17	261 / 261	contig01428 len=961 cov=3.6 corr=2 origname=NODE_1505_length_961_cov_3.571264_pilon sw=shovill-spades/1.1.0 date=20231107	347..605	AY458016																												
SAM128623	Escherichia_coli	461892860	752	0.5024	106.085 KB	17	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_134.158_Circ,	103	5473788	4447156	3194136	105.066	123.085	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00086 len=5109 cov=28.8 corr=0 origname=NODE_86_length_5109_cov_28.750100_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314372 cov=32.5 corr=0 origname=NODE_1_length_314372_cov_32.479090_pilon sw=shovill-spades/1.1.0 date=20231107	198820..200802	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00063 len=14102 cov=20.8 corr=0 origname=NODE_63_length_14102_cov_20.791307_pilon sw=shovill-spades/1.1.0 date=20231107	4385..7189		44	ehxA	100	2997 / 2997	contig00047 len=31680 cov=75.7 corr=0 origname=NODE_47_length_31680_cov_75.689449_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00063 len=14102 cov=20.8 corr=0 origname=NODE_63_length_14102_cov_20.791307_pilon sw=shovill-spades/1.1.0 date=20231107	9930..10508	Type III secretions system	AE005174	espB	100	939 / 939	contig00063 len=14102 cov=20.8 corr=0 origname=NODE_63_length_14102_cov_20.791307_pilon sw=shovill-spades/1.1.0 date=20231107	11666..12604	Secreted protein B	AE005174	espJ	100	654 / 654	contig00045 len=35798 cov=23.0 corr=0 origname=NODE_45_length_35798_cov_22.974039_pilon sw=shovill-spades/1.1.0 date=20231107	34436..35089	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00067 len=11488 cov=56.3 corr=0 origname=NODE_67_length_11488_cov_56.329209_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=219671 cov=31.1 corr=0 origname=NODE_2_length_219671_cov_31.121609_pilon sw=shovill-spades/1.1.0 date=20231107	145807..146376			etpD	100	1758 / 1758	contig00047 len=31680 cov=75.7 corr=0 origname=NODE_47_length_31680_cov_75.689449_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=217159 cov=26.8 corr=0 origname=NODE_3_length_217159_cov_26.843680_pilon sw=shovill-spades/1.1.0 date=20231107	122118..122606	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314372 cov=32.5 corr=0 origname=NODE_1_length_314372_cov_32.479090_pilon sw=shovill-spades/1.1.0 date=20231107	217672..219072	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00058 len=21369 cov=26.3 corr=0 origname=NODE_58_length_21369_cov_26.338707_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00040 len=43525 cov=21.4 corr=0 origname=NODE_40_length_43525_cov_21.378897_pilon sw=shovill-spades/1.1.0 date=20231107	10160..12250	Adherence protein	AE005174	iss	98.3	294 / 294	contig00057 len=21529 cov=58.1 corr=0 origname=NODE_57_length_21529_cov_58.141711_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00090 len=4264 cov=39.9 corr=0 origname=NODE_90_length_4264_cov_39.918045_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78937 cov=34.2 corr=0 origname=NODE_25_length_78937_cov_34.186313_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78937 cov=34.2 corr=0 origname=NODE_25_length_78937_cov_34.186313_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00064 len=13383 cov=70.4 corr=0 origname=NODE_64_length_13383_cov_70.409344_pilon sw=shovill-spades/1.1.0 date=20231107	10594..12804	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00086 len=5109 cov=28.8 corr=0 origname=NODE_86_length_5109_cov_28.750100_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00010 len=128255 cov=28.3 corr=0 origname=NODE_10_length_128255_cov_28.313887_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00062 len=15109 cov=23.6 corr=0 origname=NODE_62_length_15109_cov_23.587162_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00010 len=128255 cov=28.3 corr=0 origname=NODE_10_length_128255_cov_28.313887_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00013 len=124425 cov=29.9 corr=0 origname=NODE_13_length_124425_cov_29.924397_pilon sw=shovill-spades/1.1.0 date=20231107	16127..17011	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00058 len=21369 cov=26.3 corr=0 origname=NODE_58_length_21369_cov_26.338707_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00115 len=2397 cov=38.4 corr=0 origname=NODE_115_length_2397_cov_38.366869_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00093 len=3959 cov=34.2 corr=0 origname=NODE_93_length_3959_cov_34.224405_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00040 len=43525 cov=21.4 corr=0 origname=NODE_40_length_43525_cov_21.378897_pilon sw=shovill-spades/1.1.0 date=20231107	14845..15885	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00035 len=48673 cov=26.5 corr=0 origname=NODE_35_length_48673_cov_26.470092_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00031 len=59918 cov=30.1 corr=0 origname=NODE_31_length_59918_cov_30.089608_pilon sw=shovill-spades/1.1.0 date=20231107	4947..5910	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00063 len=14102 cov=20.8 corr=0 origname=NODE_63_length_14102_cov_20.791307_pilon sw=shovill-spades/1.1.0 date=20231107	2023..3717	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00056 len=22666 cov=54.0 corr=0 origname=NODE_56_length_22666_cov_54.011163_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00106 len=2786 cov=24.7 corr=0 origname=NODE_106_length_2786_cov_24.704638_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00040 len=43525 cov=21.4 corr=0 origname=NODE_40_length_43525_cov_21.378897_pilon sw=shovill-spades/1.1.0 date=20231107	34452..34580	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00108 len=2769 cov=62.2 corr=0 origname=NODE_108_length_2769_cov_62.208738_pilon sw=shovill-spades/1.1.0 date=20231107	1437..1567	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00047 len=31680 cov=75.7 corr=0 origname=NODE_47_length_31680_cov_75.689449_pilon sw=shovill-spades/1.1.0 date=20231107	26612..27293	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=13383 cov=70.4 corr=0 origname=NODE_64_length_13383_cov_70.409344_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128624	Escherichia_coli	473627440	723	0.5024	121.286 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_108.265_Circ,	103	5476411	4554862	3269894	104.996	120.232	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00084 len=5109 cov=36.8 corr=0 origname=NODE_84_length_5109_cov_36.829414_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314247 cov=32.2 corr=0 origname=NODE_2_length_314247_cov_32.211513_pilon sw=shovill-spades/1.1.0 date=20231107	198536..200518	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00009 len=146585 cov=26.6 corr=0 origname=NODE_9_length_146585_cov_26.564139_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00045 len=31676 cov=71.6 corr=0 origname=NODE_45_length_31676_cov_71.630078_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00009 len=146585 cov=26.6 corr=0 origname=NODE_9_length_146585_cov_26.564139_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00009 len=146585 cov=26.6 corr=0 origname=NODE_9_length_146585_cov_26.564139_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00042 len=33840 cov=26.3 corr=0 origname=NODE_42_length_33840_cov_26.331714_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00067 len=11488 cov=46.9 corr=0 origname=NODE_67_length_11488_cov_46.857331_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=361847 cov=29.1 corr=0 origname=NODE_1_length_361847_cov_29.058633_pilon sw=shovill-spades/1.1.0 date=20231107	145728..146297			etpD	100	1758 / 1758	contig00045 len=31676 cov=71.6 corr=0 origname=NODE_45_length_31676_cov_71.630078_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=361847 cov=29.1 corr=0 origname=NODE_1_length_361847_cov_29.058633_pilon sw=shovill-spades/1.1.0 date=20231107	321031..321519	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314247 cov=32.2 corr=0 origname=NODE_2_length_314247_cov_32.211513_pilon sw=shovill-spades/1.1.0 date=20231107	217388..218788	Glutamate decarboxylase	BA000007	gad	99.79	1401 / 1401	contig00017 len=109112 cov=22.0 corr=1 origname=NODE_17_length_109150_cov_22.040574_pilon sw=shovill-spades/1.1.0 date=20231107	43400..44800	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00056 len=21369 cov=23.1 corr=0 origname=NODE_56_length_21369_cov_23.096344_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00036 len=43525 cov=20.8 corr=0 origname=NODE_36_length_43525_cov_20.751807_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=25.0 corr=0 origname=NODE_43_length_33152_cov_24.957987_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00064 len=13387 cov=51.6 corr=0 origname=NODE_64_length_13387_cov_51.603189_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=35.9 corr=0 origname=NODE_23_length_78936_cov_35.941924_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=35.9 corr=0 origname=NODE_23_length_78936_cov_35.941924_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00065 len=13383 cov=72.1 corr=0 origname=NODE_65_length_13383_cov_72.126693_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00084 len=5109 cov=36.8 corr=0 origname=NODE_84_length_5109_cov_36.829414_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00040 len=38331 cov=34.1 corr=0 origname=NODE_40_length_38331_cov_34.089514_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00061 len=15109 cov=23.8 corr=0 origname=NODE_61_length_15109_cov_23.766081_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00040 len=38331 cov=34.1 corr=0 origname=NODE_40_length_38331_cov_34.089514_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124411 cov=29.8 corr=0 origname=NODE_14_length_124411_cov_29.826440_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00056 len=21369 cov=23.1 corr=0 origname=NODE_56_length_21369_cov_23.096344_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00109 len=2397 cov=41.0 corr=0 origname=NODE_109_length_2397_cov_40.956635_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00093 len=3959 cov=41.5 corr=0 origname=NODE_93_length_3959_cov_41.506463_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00036 len=43525 cov=20.8 corr=0 origname=NODE_36_length_43525_cov_20.751807_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00013 len=124420 cov=25.1 corr=0 origname=NODE_13_length_124420_cov_25.116682_pilon sw=shovill-spades/1.1.0 date=20231107	100882..101595	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00027 len=59884 cov=30.3 corr=0 origname=NODE_27_length_59884_cov_30.267724_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00009 len=146585 cov=26.6 corr=0 origname=NODE_9_length_146585_cov_26.564139_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00054 len=22666 cov=58.2 corr=0 origname=NODE_54_length_22666_cov_58.202348_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00124 len=1756 cov=23.5 corr=0 origname=NODE_124_length_1756_cov_23.533333_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00036 len=43525 cov=20.8 corr=0 origname=NODE_36_length_43525_cov_20.751807_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00102 len=2775 cov=50.9 corr=0 origname=NODE_102_length_2775_cov_50.941878_pilon sw=shovill-spades/1.1.0 date=20231107	2394..2524	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=31676 cov=71.6 corr=0 origname=NODE_45_length_31676_cov_71.630078_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=13383 cov=72.1 corr=0 origname=NODE_65_length_13383_cov_72.126693_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128625	Escherichia_coli	155640914	1139	0.5032	17.747 KB	81	adk_12,fumC_12*,gyrB_8,icd_12,mdh_15*,purA_2,recA_2	11*	7::157	E	FimH36	23	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espY2:000868321,fimH,gad,hlyE,iha,iss,iss,katP,nleA,nleB,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		76	5421140	2041525	1070568	76.633	265.543	adk	100	100	adk_12	fumC	99.7867803837953	100	fumC_12*	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	99.5575221238938	100	mdh_15*	purA	100	100	purA_2	recA	100	100	recA_2	7		157	H_fliC	99.94	1758 / 1758	O1_wzx			O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00380 len=2757 cov=11.7 corr=0 origname=NODE_380_length_2757_cov_11.676669_pilon sw=shovill-spades/1.1.0 date=20231107	2159..2255	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00196 len=7593 cov=8.3 corr=2 origname=NODE_196_length_7593_cov_8.322181_pilon sw=shovill-spades/1.1.0 date=20231107	1923..3905	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00191 len=7934 cov=9.4 corr=2 origname=NODE_191_length_7934_cov_9.447915_pilon sw=shovill-spades/1.1.0 date=20231107	4144..6948		44	ehxA	99.77	2997 / 2997	contig00092 len=15926 cov=9.5 corr=7 origname=NODE_92_length_15926_cov_9.460499_pilon sw=shovill-spades/1.1.0 date=20231107	932..3928	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00237 len=5940 cov=10.4 corr=2 origname=NODE_237_length_5940_cov_10.437682_pilon sw=shovill-spades/1.1.0 date=20231107	1768..2346	Type III secretions system	AE005174	espB	100	939 / 939	contig00237 len=5940 cov=10.4 corr=2 origname=NODE_237_length_5940_cov_10.437682_pilon sw=shovill-spades/1.1.0 date=20231107	3504..4442	Secreted protein B	AE005174	espJ	100	654 / 654	contig00427 len=2071 cov=13.6 corr=0 origname=NODE_427_length_2071_cov_13.600505_pilon sw=shovill-spades/1.1.0 date=20231107	606..1259	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00021 len=40543 cov=10.2 corr=9 origname=NODE_21_length_40543_cov_10.161648_pilon sw=shovill-spades/1.1.0 date=20231107	36888..37457			fimH	100	489 / 489	contig00024 len=38126 cov=8.1 corr=9 origname=NODE_24_length_38126_cov_8.056685_pilon sw=shovill-spades/1.1.0 date=20231107	32216..32704	Type 1 fimbriae		gad	99.48	1344 / 1401	contig00006 len=59812 cov=12.3 corr=5 origname=NODE_6_length_59812_cov_12.293565_pilon sw=shovill-spades/1.1.0 date=20231107	58466..59809	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00517 len=1322 cov=6.9 corr=0 origname=NODE_517_length_1322_cov_6.878148_pilon sw=shovill-spades/1.1.0 date=20231107	250..1167	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00288 len=4457 cov=17.2 corr=0 origname=NODE_288_length_4457_cov_17.188960_pilon sw=shovill-spades/1.1.0 date=20231107	1266..3356	Adherence protein	AE005174	iss	98.53	272 / 294	contig00043 len=27424 cov=17.2 corr=0 origname=NODE_43_length_27424_cov_17.155343_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00632 len=599 cov=9.5 corr=0 origname=NODE_640_length_599_cov_9.488189_pilon sw=shovill-spades/1.1.0 date=20231107	328..599	Increased serum survival	CP001509	katP	99.8	2030 / 2211	contig00390 len=2610 cov=4.9 corr=0 origname=NODE_390_length_2610_cov_4.928146_pilon sw=shovill-spades/1.1.0 date=20231107	2..2031	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00295 len=4342 cov=21.4 corr=0 origname=NODE_295_length_4342_cov_21.430957_pilon sw=shovill-spades/1.1.0 date=20231107	1732..3057	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00017 len=45774 cov=10.7 corr=10 origname=NODE_17_length_45774_cov_10.655036_pilon sw=shovill-spades/1.1.0 date=20231107	40985..41965	Non-LEE encoded effector B	AE005174	nleC	98.38	988 / 993	contig00017 len=45774 cov=10.7 corr=10 origname=NODE_17_length_45774_cov_10.655036_pilon sw=shovill-spades/1.1.0 date=20231107	39937..40924	Non-LEE encoded effector C	AE005174	nlpI	99.66	885 / 885	contig00239 len=5915 cov=6.3 corr=1 origname=NODE_239_length_5915_cov_6.327438_pilon sw=shovill-spades/1.1.0 date=20231107	4314..5198	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00297 len=4274 cov=8.7 corr=0 origname=NODE_297_length_4274_cov_8.682285_pilon sw=shovill-spades/1.1.0 date=20231107	2028..2981	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00434 len=2038 cov=11.0 corr=0 origname=NODE_434_length_2038_cov_10.991269_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00201 len=7488 cov=5.8 corr=4 origname=NODE_201_length_7488_cov_5.823848_pilon sw=shovill-spades/1.1.0 date=20231107	723..1763	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00064 len=21885 cov=9.6 corr=4 origname=NODE_64_length_21885_cov_9.640039_pilon sw=shovill-spades/1.1.0 date=20231107	8491..9204	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00171 len=9324 cov=8.4 corr=2 origname=NODE_171_length_9324_cov_8.392397_pilon sw=shovill-spades/1.1.0 date=20231107	4936..5899	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00191 len=7934 cov=9.4 corr=2 origname=NODE_191_length_7934_cov_9.447915_pilon sw=shovill-spades/1.1.0 date=20231107	1800..3476	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00191 len=7934 cov=9.4 corr=2 origname=NODE_191_length_7934_cov_9.447915_pilon sw=shovill-spades/1.1.0 date=20231107	1800..3476	Translocated intimin receptor protein	AF125993	traT	100	423 / 423	contig00377 len=2809 cov=7.6 corr=0 origname=NODE_377_length_2809_cov_7.616998_pilon sw=shovill-spades/1.1.0 date=20231107	1171..1593	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00227 len=6368 cov=7.1 corr=1 origname=NODE_227_length_6368_cov_7.105942_pilon sw=shovill-spades/1.1.0 date=20231107	3822..3950	Outer membrane protein complement resistance	AMTE01000156																																																																																					aph(6)-Id	100	837/837	contig00300 len=4241 cov=9.2 corr=3 origname=NODE_300_length_4241_cov_9.210120_pilon sw=shovill-spades/1.1.0 date=20231107	1100..1936	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00300 len=4241 cov=9.2 corr=3 origname=NODE_300_length_4241_cov_9.210120_pilon sw=shovill-spades/1.1.0 date=20231107	298..1100	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00300 len=4241 cov=9.2 corr=3 origname=NODE_300_length_4241_cov_9.210120_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00300 len=4241 cov=9.2 corr=3 origname=NODE_300_length_4241_cov_9.210120_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00300 len=4241 cov=9.2 corr=3 origname=NODE_300_length_4241_cov_9.210120_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321550	sul2	99.75	816/816	contig00300 len=4241 cov=9.2 corr=3 origname=NODE_300_length_4241_cov_9.210120_pilon sw=shovill-spades/1.1.0 date=20231107	2709..3524	Sulfamethoxazole	AJ830714	tet(B)	99.83	1206/1206	contig00247 len=5569 cov=4.8 corr=4 origname=NODE_247_length_5569_cov_4.817817_pilon sw=shovill-spades/1.1.0 date=20231107	4199..5404	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00245 len=5664 cov=6.8 corr=1 origname=NODE_245_length_5664_cov_6.784676_pilon sw=shovill-spades/1.1.0 date=20231107	4387..5068	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00406 len=2298 cov=8.5 corr=0 origname=NODE_406_length_2298_cov_8.459900_pilon sw=shovill-spades/1.1.0 date=20231107	460..718	AY458016																												
SAM128626	Escherichia_coli	497526458	734	0.5029	109.06 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,toxB,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		106	5514322	4656030	3431592	107.75	118.433	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00080 len=6783 cov=27.8 corr=0 origname=NODE_80_length_6783_cov_27.812911_pilon sw=shovill-spades/1.1.0 date=20231107	503..599	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314249 cov=35.6 corr=0 origname=NODE_2_length_314249_cov_35.634865_pilon sw=shovill-spades/1.1.0 date=20231107	198528..200510	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00008 len=145662 cov=28.4 corr=0 origname=NODE_8_length_145662_cov_28.363877_pilon sw=shovill-spades/1.1.0 date=20231107	135945..138749		44	ehxA	100	2997 / 2997	contig00043 len=31641 cov=73.3 corr=0 origname=NODE_43_length_31641_cov_73.257876_pilon sw=shovill-spades/1.1.0 date=20231107	17469..20465	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00008 len=145662 cov=28.4 corr=0 origname=NODE_8_length_145662_cov_28.363877_pilon sw=shovill-spades/1.1.0 date=20231107	141490..142068	Type III secretions system	AE005174	espB	100	939 / 939	contig00008 len=145662 cov=28.4 corr=0 origname=NODE_8_length_145662_cov_28.363877_pilon sw=shovill-spades/1.1.0 date=20231107	143226..144164	Secreted protein B	AE005174	espJ	100	654 / 654	contig00033 len=55156 cov=28.4 corr=0 origname=NODE_33_length_55156_cov_28.350204_pilon sw=shovill-spades/1.1.0 date=20231107	53557..54210	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00063 len=11475 cov=51.2 corr=0 origname=NODE_63_length_11475_cov_51.187632_pilon sw=shovill-spades/1.1.0 date=20231107	7404..11306	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=306889 cov=32.0 corr=0 origname=NODE_3_length_306889_cov_32.027973_pilon sw=shovill-spades/1.1.0 date=20231107	77191..77760			etpD	100	1758 / 1758	contig00043 len=31641 cov=73.3 corr=0 origname=NODE_43_length_31641_cov_73.257876_pilon sw=shovill-spades/1.1.0 date=20231107	4532..6289	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=306889 cov=32.0 corr=0 origname=NODE_3_length_306889_cov_32.027973_pilon sw=shovill-spades/1.1.0 date=20231107	252503..252991	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314249 cov=35.6 corr=0 origname=NODE_2_length_314249_cov_35.634865_pilon sw=shovill-spades/1.1.0 date=20231107	217380..218780	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00055 len=21702 cov=32.2 corr=0 origname=NODE_55_length_21702_cov_32.209847_pilon sw=shovill-spades/1.1.0 date=20231107	14369..15286	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00046 len=28910 cov=18.3 corr=0 origname=NODE_46_length_28910_cov_18.339464_pilon sw=shovill-spades/1.1.0 date=20231107	15292..17382	Adherence protein	AE005174	iss	98.3	294 / 294	contig00001 len=397846 cov=31.2 corr=0 origname=NODE_1_length_397846_cov_31.214484_pilon sw=shovill-spades/1.1.0 date=20231107	395551..395844	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00035 len=49024 cov=34.3 corr=0 origname=NODE_35_length_49024_cov_34.308524_pilon sw=shovill-spades/1.1.0 date=20231107	48068..48361	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00057 len=18322 cov=45.0 corr=0 origname=NODE_57_length_18322_cov_44.966486_pilon sw=shovill-spades/1.1.0 date=20231107	121..414	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00057 len=18322 cov=45.0 corr=0 origname=NODE_57_length_18322_cov_44.966486_pilon sw=shovill-spades/1.1.0 date=20231107	121..414	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00104 len=3725 cov=42.9 corr=0 origname=NODE_104_length_3725_cov_42.869015_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00080 len=6783 cov=27.8 corr=0 origname=NODE_80_length_6783_cov_27.812911_pilon sw=shovill-spades/1.1.0 date=20231107	4392..5717	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00011 len=128199 cov=29.7 corr=0 origname=NODE_11_length_128199_cov_29.709214_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00060 len=15107 cov=23.4 corr=0 origname=NODE_60_length_15107_cov_23.360216_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00011 len=128199 cov=29.7 corr=0 origname=NODE_11_length_128199_cov_29.709214_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00004 len=303403 cov=22.1 corr=1 origname=NODE_4_length_303403_cov_22.083604_pilon sw=shovill-spades/1.1.0 date=20231107	479..1465	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00013 len=124347 cov=33.3 corr=0 origname=NODE_13_length_124347_cov_33.276783_pilon sw=shovill-spades/1.1.0 date=20231107	107338..108222	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00095 len=4269 cov=25.5 corr=0 origname=NODE_95_length_4269_cov_25.457396_pilon sw=shovill-spades/1.1.0 date=20231107	1292..2245	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00026 len=67894 cov=26.0 corr=0 origname=NODE_26_length_67894_cov_25.977140_pilon sw=shovill-spades/1.1.0 date=20231107	66166..67392	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00046 len=28910 cov=18.3 corr=0 origname=NODE_46_length_28910_cov_18.339464_pilon sw=shovill-spades/1.1.0 date=20231107	11658..12698	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00034 len=52417 cov=26.5 corr=0 origname=NODE_34_length_52417_cov_26.522417_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00029 len=60156 cov=32.8 corr=0 origname=NODE_29_length_60156_cov_32.761741_pilon sw=shovill-spades/1.1.0 date=20231107	4990..5953	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00008 len=145662 cov=28.4 corr=0 origname=NODE_8_length_145662_cov_28.363877_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00008 len=145662 cov=28.4 corr=0 origname=NODE_8_length_145662_cov_28.363877_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AF125993	toxB	99.95	9510 / 9510	contig00047 len=28896 cov=57.4 corr=0 origname=NODE_47_length_28896_cov_57.400625_pilon sw=shovill-spades/1.1.0 date=20231107	10116..19625	Toxin B	AB011549	traT	100	423 / 423	contig00059 len=17194 cov=18.9 corr=0 origname=NODE_59_length_17194_cov_18.927615_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00059 len=17194 cov=18.9 corr=0 origname=NODE_59_length_17194_cov_18.927615_pilon sw=shovill-spades/1.1.0 date=20231107	10517..10645	Outer membrane protein complement resistance	AMTE01000156																																				aph(6)-Id	100	837/837	contig00089 len=5152 cov=24.2 corr=0 origname=NODE_89_length_5152_cov_24.182375_pilon sw=shovill-spades/1.1.0 date=20231107	3217..4053	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00089 len=5152 cov=24.2 corr=0 origname=NODE_89_length_5152_cov_24.182375_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4855	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00089 len=5152 cov=24.2 corr=0 origname=NODE_89_length_5152_cov_24.182375_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4856	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00089 len=5152 cov=24.2 corr=0 origname=NODE_89_length_5152_cov_24.182375_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4856	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00089 len=5152 cov=24.2 corr=0 origname=NODE_89_length_5152_cov_24.182375_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4856	Streptomycin	AF321550	sul2	100	816/816	contig00089 len=5152 cov=24.2 corr=0 origname=NODE_89_length_5152_cov_24.182375_pilon sw=shovill-spades/1.1.0 date=20231107	1629..2444	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00081 len=6731 cov=11.5 corr=0 origname=NODE_81_length_6731_cov_11.474398_pilon sw=shovill-spades/1.1.0 date=20231107	1328..2533	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31641 cov=73.3 corr=0 origname=NODE_43_length_31641_cov_73.257876_pilon sw=shovill-spades/1.1.0 date=20231107	26573..27254	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00047 len=28896 cov=57.4 corr=0 origname=NODE_47_length_28896_cov_57.400625_pilon sw=shovill-spades/1.1.0 date=20231107	3048..3306	AY458016																												
SAM128627	Escherichia_coli	591243224	730	0.5024	134.784 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_160.848_Circ,	122	5481354	4820947	4080258	123.803	113.698	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00079 len=5188 cov=48.2 corr=0 origname=NODE_79_length_5188_cov_48.208358_pilon sw=shovill-spades/1.1.0 date=20231107	4591..4687	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=40.8 corr=0 origname=NODE_1_length_314496_cov_40.760551_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145661 cov=33.5 corr=0 origname=NODE_13_length_145661_cov_33.546720_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00042 len=31680 cov=82.5 corr=0 origname=NODE_42_length_31680_cov_82.507044_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145661 cov=33.5 corr=0 origname=NODE_13_length_145661_cov_33.546720_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145661 cov=33.5 corr=0 origname=NODE_13_length_145661_cov_33.546720_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00040 len=33840 cov=31.6 corr=0 origname=NODE_40_length_33840_cov_31.568165_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00064 len=11488 cov=70.3 corr=0 origname=NODE_64_length_11488_cov_70.295341_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=227766 cov=41.6 corr=0 origname=NODE_4_length_227766_cov_41.563773_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00042 len=31680 cov=82.5 corr=0 origname=NODE_42_length_31680_cov_82.507044_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00005 len=217625 cov=33.7 corr=0 origname=NODE_5_length_217625_cov_33.706037_pilon sw=shovill-spades/1.1.0 date=20231107	94467..94955	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=40.8 corr=0 origname=NODE_1_length_314496_cov_40.760551_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00002 len=248202 cov=33.4 corr=0 origname=NODE_2_length_248202_cov_33.407874_pilon sw=shovill-spades/1.1.0 date=20231107	183157..184557	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=39.5 corr=0 origname=NODE_52_length_21369_cov_39.490413_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00029 len=51407 cov=28.8 corr=0 origname=NODE_29_length_51407_cov_28.834223_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00060 len=13527 cov=71.3 corr=0 origname=NODE_60_length_13527_cov_71.263025_pilon sw=shovill-spades/1.1.0 date=20231107	2028..2321	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00074 len=7178 cov=53.7 corr=0 origname=NODE_74_length_7178_cov_53.690278_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00049 len=24185 cov=36.3 corr=0 origname=NODE_49_length_24185_cov_36.333112_pilon sw=shovill-spades/1.1.0 date=20231107	23146..23439	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00049 len=24185 cov=36.3 corr=0 origname=NODE_49_length_24185_cov_36.333112_pilon sw=shovill-spades/1.1.0 date=20231107	23146..23439	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00086 len=3725 cov=61.5 corr=0 origname=NODE_86_length_3725_cov_61.472207_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00079 len=5188 cov=48.2 corr=0 origname=NODE_79_length_5188_cov_48.208358_pilon sw=shovill-spades/1.1.0 date=20231107	1147..2472	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244299 cov=31.8 corr=0 origname=NODE_3_length_244299_cov_31.834354_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15278 cov=36.1 corr=0 origname=NODE_58_length_15278_cov_36.060446_pilon sw=shovill-spades/1.1.0 date=20231107	9468..10457	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244299 cov=31.8 corr=0 origname=NODE_3_length_244299_cov_31.834354_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=37.0 corr=0 origname=NODE_16_length_124410_cov_36.972104_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=39.5 corr=0 origname=NODE_52_length_21369_cov_39.490413_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3718 cov=56.9 corr=0 origname=NODE_87_length_3718_cov_56.866556_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=4514 cov=69.5 corr=0 origname=NODE_83_length_4514_cov_69.465973_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00029 len=51407 cov=28.8 corr=0 origname=NODE_29_length_51407_cov_28.834223_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00032 len=48917 cov=31.9 corr=0 origname=NODE_32_length_48917_cov_31.928911_pilon sw=shovill-spades/1.1.0 date=20231107	25379..26092	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160495 cov=37.6 corr=0 origname=NODE_10_length_160495_cov_37.586893_pilon sw=shovill-spades/1.1.0 date=20231107	105524..106487	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145661 cov=33.5 corr=0 origname=NODE_13_length_145661_cov_33.546720_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00055 len=19379 cov=58.8 corr=0 origname=NODE_55_length_19379_cov_58.797543_pilon sw=shovill-spades/1.1.0 date=20231107	9237..18746	Toxin B	AB011549	traT	100	423 / 423	contig00117 len=1756 cov=23.4 corr=0 origname=NODE_117_length_1756_cov_23.351952_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00029 len=51407 cov=28.8 corr=0 origname=NODE_29_length_51407_cov_28.834223_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=74.7 corr=0 origname=NODE_94_length_2769_cov_74.700523_pilon sw=shovill-spades/1.1.0 date=20231107	2308..2438	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31680 cov=82.5 corr=0 origname=NODE_42_length_31680_cov_82.507044_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00069 len=9309 cov=103.7 corr=0 origname=NODE_69_length_9309_cov_103.680950_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128628	Escherichia_coli	542726184	786	0.5024	146.585 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_132.195_Circ,	112	5484831	4841031	3748468	113.252	113.298	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00070 len=7013 cov=85.9 corr=0 origname=NODE_70_length_7013_cov_85.855678_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=38.5 corr=0 origname=NODE_2_length_314496_cov_38.514235_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=146585 cov=32.4 corr=0 origname=NODE_13_length_146585_cov_32.382951_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00041 len=31679 cov=27.6 corr=0 origname=NODE_41_length_31679_cov_27.572654_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=146585 cov=32.4 corr=0 origname=NODE_13_length_146585_cov_32.382951_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=146585 cov=32.4 corr=0 origname=NODE_13_length_146585_cov_32.382951_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=65462 cov=30.3 corr=0 origname=NODE_27_length_65462_cov_30.289716_pilon sw=shovill-spades/1.1.0 date=20231107	806..1459	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00057 len=11488 cov=19.8 corr=0 origname=NODE_57_length_11488_cov_19.751514_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444771 cov=34.9 corr=1 origname=NODE_1_length_444771_cov_34.888844_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00041 len=31679 cov=27.6 corr=0 origname=NODE_41_length_31679_cov_27.572654_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444771 cov=34.9 corr=1 origname=NODE_1_length_444771_cov_34.888844_pilon sw=shovill-spades/1.1.0 date=20231107	322166..322654	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=38.5 corr=0 origname=NODE_2_length_314496_cov_38.514235_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00048 len=21369 cov=40.2 corr=0 origname=NODE_48_length_21369_cov_40.220744_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00031 len=51407 cov=25.5 corr=0 origname=NODE_31_length_51407_cov_25.504190_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00039 len=33057 cov=41.2 corr=0 origname=NODE_39_length_33057_cov_41.205060_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00053 len=14529 cov=66.2 corr=0 origname=NODE_53_length_14529_cov_66.249411_pilon sw=shovill-spades/1.1.0 date=20231107	3125..3418	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=40.9 corr=0 origname=NODE_23_length_78936_cov_40.861653_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=40.9 corr=0 origname=NODE_23_length_78936_cov_40.861653_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00086 len=3618 cov=24.0 corr=0 origname=NODE_86_length_3618_cov_24.037993_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00070 len=7013 cov=85.9 corr=0 origname=NODE_70_length_7013_cov_85.855678_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=238348 cov=28.3 corr=0 origname=NODE_3_length_238348_cov_28.345471_pilon sw=shovill-spades/1.1.0 date=20231107	218..1198	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15109 cov=28.5 corr=0 origname=NODE_52_length_15109_cov_28.505860_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=238348 cov=28.3 corr=0 origname=NODE_3_length_238348_cov_28.345471_pilon sw=shovill-spades/1.1.0 date=20231107	1259..2251	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=33.4 corr=0 origname=NODE_14_length_124410_cov_33.364393_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00048 len=21369 cov=40.2 corr=0 origname=NODE_48_length_21369_cov_40.220744_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3547 cov=46.3 corr=0 origname=NODE_87_length_3547_cov_46.315394_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00084 len=3959 cov=53.2 corr=0 origname=NODE_84_length_3959_cov_53.205791_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00031 len=51407 cov=25.5 corr=0 origname=NODE_31_length_51407_cov_25.504190_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183801 cov=32.8 corr=0 origname=NODE_8_length_183801_cov_32.752920_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00011 len=160521 cov=37.6 corr=0 origname=NODE_11_length_160521_cov_37.591934_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=146585 cov=32.4 corr=0 origname=NODE_13_length_146585_cov_32.382951_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00059 len=10445 cov=9.9 corr=0 origname=NODE_59_length_10445_cov_9.918280_pilon sw=shovill-spades/1.1.0 date=20231107	853..10362	Toxin B	AB011549	traT	100	423 / 423	contig00116 len=1756 cov=22.7 corr=0 origname=NODE_116_length_1756_cov_22.671471_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00031 len=51407 cov=25.5 corr=0 origname=NODE_31_length_51407_cov_25.504190_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2769 cov=61.6 corr=0 origname=NODE_95_length_2769_cov_61.603809_pilon sw=shovill-spades/1.1.0 date=20231107	373..503	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00041 len=31679 cov=27.6 corr=0 origname=NODE_41_length_31679_cov_27.572654_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00060 len=10339 cov=29.9 corr=0 origname=NODE_60_length_10339_cov_29.920960_pilon sw=shovill-spades/1.1.0 date=20231107	4077..4335	AY458016																					
SAM128629	Escherichia_coli	298507924	8504	0.4988	2.156 KB	831	adk_10,fumC_2182?,gyrB_1380?,icd_1621?,mdh_642*,purA_1245?,recA_2	Unknown	48:13/129:13/129/135	E	FimH54	28	astA,chuA,cia,csgA,eae-g01-gamma,espA,espB,espJ,espY2:000868321,etpD,fimH,hlyA,hlyE,iha,iss,iss,iss,nleB,nleC,nlpI,ompT,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,tir,traJ,traT,traT,traT,tsh,yehA,yehB	1	tet(A)	0		5	Col(pHAD28),IncFIA,IncFIB(AP001918),IncFII,IncI1-I(Alpha)	1	Contig_3_22.7059_Circ,	74	7937543	4023275	2061996	74.971	197.29	adk	100	100	adk_10	fumC	100	67.590618336887	fumC_2182?	gyrB	100	62.3913043478261	gyrB_1380?	icd	100	68.3397683397683	icd_1621?	mdh	99.7787610619469	100	mdh_642*	purA	100	85.9832635983264	purA_1245?	recA	100	100	recA_2	48	13/129	13/129/135	H_fliC	99.93	1442 / 1497	O1_wzx	99.84	1257 / 1257	O2_wzy	99.83	1149 / 1149	astA	100	97 / 117	contig00391 len=3515 cov=6.5 corr=3 origname=NODE_391_length_3515_cov_6.528914_pilon sw=shovill-spades/1.1.0 date=20231107	503..599	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00039 len=10592 cov=9.0 corr=1 origname=NODE_39_length_10592_cov_9.008666_pilon sw=shovill-spades/1.1.0 date=20231107	856..2838	Outer membrane hemin receptor	UGGA01000003	cia	98.58	141 / 147	contig00018 len=14885 cov=9.5 corr=0 origname=NODE_18_length_14885_cov_9.457348_pilon sw=shovill-spades/1.1.0 date=20231107	1403..1543	Colicin ia	QMGM01000002	csgA	100	456 / 456	contig00152 len=5838 cov=11.0 corr=3 origname=NODE_152_length_5838_cov_11.020532_pilon sw=shovill-spades/1.1.0 date=20231107	5187..5642	curlin major subunit CsgA	CP069646	eae-g01-gamma	99.79	2805 / 2805	contig00441 len=3292 cov=4.8 corr=1 origname=NODE_441_length_3292_cov_4.766323_pilon sw=shovill-spades/1.1.0 date=20231107	107..2911		44	espA	100	579 / 579	contig00567 len=2877 cov=4.5 corr=3 origname=NODE_567_length_2877_cov_4.503589_pilon sw=shovill-spades/1.1.0 date=20231107	896..1474	Type III secretions system	AE005174	espB	99.89	939 / 939	contig01466 len=1321 cov=3.3 corr=0 origname=NODE_1465_length_1321_cov_3.320325_pilon sw=shovill-spades/1.1.0 date=20231107	244..1182	Secreted protein B	AE005174	espJ	99.85	654 / 654	contig00844 len=2133 cov=8.0 corr=0 origname=NODE_844_length_2133_cov_8.026445_pilon sw=shovill-spades/1.1.0 date=20231107	389..1042	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00804 len=2205 cov=10.7 corr=2 origname=NODE_804_length_2205_cov_10.724219_pilon sw=shovill-spades/1.1.0 date=20231107	481..1050			etpD	99.94	1758 / 1758	contig00148 len=5897 cov=6.4 corr=1 origname=NODE_148_length_5897_cov_6.422150_pilon sw=shovill-spades/1.1.0 date=20231107	2296..4053	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00068 len=8551 cov=12.3 corr=0 origname=NODE_68_length_8551_cov_12.281678_pilon sw=shovill-spades/1.1.0 date=20231107	7807..8295	Type 1 fimbriae		hlyA	99.97	3075 / 3075	contig00018 len=14885 cov=9.5 corr=0 origname=NODE_18_length_14885_cov_9.457348_pilon sw=shovill-spades/1.1.0 date=20231107	11607..14681	Hemolysin A	CP057971	hlyE	99.39	818 / 918	contig00547 len=2933 cov=7.6 corr=0 origname=NODE_547_length_2933_cov_7.587262_pilon sw=shovill-spades/1.1.0 date=20231107	1..818	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00268 len=4383 cov=8.0 corr=1 origname=NODE_268_length_4383_cov_8.003262_pilon sw=shovill-spades/1.1.0 date=20231107	965..3055	Adherence protein	AE005174	iss	98.98	294 / 294	contig00026 len=13593 cov=15.2 corr=1 origname=NODE_26_length_13593_cov_15.164420_pilon sw=shovill-spades/1.1.0 date=20231107	2028..2321	Increased serum survival	CP001509	iss	98.64	294 / 294	contig01796 len=1097 cov=7.4 corr=0 origname=NODE_1801_length_1097_cov_7.412525_pilon sw=shovill-spades/1.1.0 date=20231107	57..350	Increased serum survival	CP001665	iss	98.64	294 / 294	contig01796 len=1097 cov=7.4 corr=0 origname=NODE_1801_length_1097_cov_7.412525_pilon sw=shovill-spades/1.1.0 date=20231107	57..350	Increased serum survival	CP001846	nleB	100	981 / 981	contig00075 len=8230 cov=11.7 corr=0 origname=NODE_75_length_8230_cov_11.704878_pilon sw=shovill-spades/1.1.0 date=20231107	4183..5163	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00075 len=8230 cov=11.7 corr=0 origname=NODE_75_length_8230_cov_11.704878_pilon sw=shovill-spades/1.1.0 date=20231107	3130..4122	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig01209 len=1595 cov=16.1 corr=0 origname=NODE_1208_length_1595_cov_16.109043_pilon sw=shovill-spades/1.1.0 date=20231107	372..1256	lipoprotein NlpI precursor	CP000243	ompT	99.79	948 / 948	contig00018 len=14885 cov=9.5 corr=0 origname=NODE_18_length_14885_cov_9.457348_pilon sw=shovill-spades/1.1.0 date=20231107	6142..7089	Outer membrane protease (protein protease 7)	CDLB01000100	ompT	99.07	752 / 753	contig00849 len=2122 cov=4.3 corr=0 origname=NODE_849_length_2122_cov_4.266864_pilon sw=shovill-spades/1.1.0 date=20231107	29..780	Outer membrane protease (protein protease 7)	CU928162	stx1a-O157-GPU96MM	100	1227 / 1227	contig00663 len=2568 cov=10.7 corr=0 origname=NODE_662_length_2568_cov_10.657247_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	99.84	1241 / 1241	contig00593 len=2775 cov=10.4 corr=0 origname=NODE_593_length_2775_cov_10.436289_pilon sw=shovill-spades/1.1.0 date=20231107	146..1386	stx2c-O157-FLY16	AB015057	terC	99.9	1041 / 1041	contig00374 len=3580 cov=10.8 corr=0 origname=NODE_374_length_3580_cov_10.824305_pilon sw=shovill-spades/1.1.0 date=20231107	1448..2488	Tellurium ion resistance protein	CYAS01000072	tir	99.87	1552 / 1695	contig00536 len=2976 cov=5.7 corr=2 origname=NODE_536_length_2976_cov_5.655459_pilon sw=shovill-spades/1.1.0 date=20231107	1..1552	Translocated intimin receptor protein	EU871626	traJ	98.26	690 / 690	contig00006 len=32003 cov=23.7 corr=0 origname=NODE_6_length_32003_cov_23.683285_pilon sw=shovill-spades/1.1.0 date=20231107	831..1520	Protein TraJ (Positive regulator of conjugal transfer operon)	AF550679	traT	100	423 / 423	contig00301 len=4040 cov=4.7 corr=0 origname=NODE_301_length_4040_cov_4.665232_pilon sw=shovill-spades/1.1.0 date=20231107	2575..2997	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00790 len=2232 cov=3.9 corr=0 origname=NODE_790_length_2232_cov_3.865483_pilon sw=shovill-spades/1.1.0 date=20231107	983..1111	Outer membrane protein complement resistance	AMTE01000156	traT	100	732 / 732	contig00006 len=32003 cov=23.7 corr=0 origname=NODE_6_length_32003_cov_23.683285_pilon sw=shovill-spades/1.1.0 date=20231107	22396..23127	Outer membrane protein complement resistance	NC_014615	tsh	99.9	4134 / 4134	contig00083 len=8018 cov=35.0 corr=0 origname=NODE_83_length_8018_cov_34.989782_pilon sw=shovill-spades/1.1.0 date=20231107	1099..5232	serine protease autotransporter of Enterobacteriaceae (SPATE)-Immunoglobulin A1 protease- Temperature-sensitive hemagglutinin	EU330199	yehA	98.65	1035 / 1035	contig00266 len=4395 cov=13.8 corr=0 origname=NODE_266_length_4395_cov_13.784387_pilon sw=shovill-spades/1.1.0 date=20231107	2969..4003	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	yehB	98.75	2481 / 2481	contig00266 len=4395 cov=13.8 corr=0 origname=NODE_266_length_4395_cov_13.784387_pilon sw=shovill-spades/1.1.0 date=20231107	473..2953	Usher, YHD fimbriael cluster	CP042934																																																		tet(A)	99.92	1200/1200	contig00333 len=3870 cov=40.9 corr=0 origname=NODE_333_length_3870_cov_40.858957_pilon sw=shovill-spades/1.1.0 date=20231107	1540..2739	Doxycycline, Tetracycline	AJ517790																																																enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00077 len=8214 cov=7.9 corr=1 origname=NODE_77_length_8214_cov_7.871599_pilon sw=shovill-spades/1.1.0 date=20231107	145..275	KU674895	enterobacteriales	IncFIA	100	388 / 388	contig00385 len=3549 cov=16.4 corr=1 origname=NODE_385_length_3549_cov_16.365818_pilon sw=shovill-spades/1.1.0 date=20231107	2951..3338	AP001918	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00181 len=5229 cov=4.4 corr=3 origname=NODE_181_length_5229_cov_4.381471_pilon sw=shovill-spades/1.1.0 date=20231107	2258..2939	AP001918	enterobacteriales	IncFII	100	261 / 261	contig00780 len=2249 cov=22.5 corr=0 origname=NODE_780_length_2249_cov_22.538925_pilon sw=shovill-spades/1.1.0 date=20231107	882..1142	AY458016	enterobacteriales	IncI1-I(Alpha)	99.3	142 / 142	contig00079 len=8170 cov=12.5 corr=0 origname=NODE_79_length_8170_cov_12.508974_pilon sw=shovill-spades/1.1.0 date=20231107	1641..1782	AP005147							
SAM128630	Escherichia_coli	682215248	705	0.5023	128.235 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_146.925_Circ,	136	5478559	5007962	4715510	137.778	109.396	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00066 len=7113 cov=108.7 corr=0 origname=NODE_66_length_7113_cov_108.667758_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=49.0 corr=0 origname=NODE_2_length_314496_cov_49.033234_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=147641 cov=47.3 corr=0 origname=NODE_10_length_147641_cov_47.343795_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00040 len=31675 cov=12.5 corr=2 origname=NODE_40_length_31675_cov_12.458017_pilon sw=shovill-spades/1.1.0 date=20231107	11175..14171	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=147641 cov=47.3 corr=0 origname=NODE_10_length_147641_cov_47.343795_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=147641 cov=47.3 corr=0 origname=NODE_10_length_147641_cov_47.343795_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=56948 cov=39.6 corr=0 origname=NODE_28_length_56948_cov_39.573896_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00057 len=11488 cov=8.2 corr=4 origname=NODE_57_length_11488_cov_8.210143_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=601726 cov=45.2 corr=0 origname=NODE_1_length_601726_cov_45.167979_pilon sw=shovill-spades/1.1.0 date=20231107	455430..455999			etpD	100	1758 / 1758	contig00040 len=31675 cov=12.5 corr=2 origname=NODE_40_length_31675_cov_12.458017_pilon sw=shovill-spades/1.1.0 date=20231107	25351..27108	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=601726 cov=45.2 corr=0 origname=NODE_1_length_601726_cov_45.167979_pilon sw=shovill-spades/1.1.0 date=20231107	280107..280595	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=49.0 corr=0 origname=NODE_2_length_314496_cov_49.033234_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=44.9 corr=0 origname=NODE_49_length_21369_cov_44.855908_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00030 len=51407 cov=31.5 corr=0 origname=NODE_30_length_51407_cov_31.544041_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00055 len=13387 cov=65.1 corr=0 origname=NODE_55_length_13387_cov_65.101008_pilon sw=shovill-spades/1.1.0 date=20231107	2028..2321	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00089 len=3418 cov=53.3 corr=0 origname=NODE_89_length_3418_cov_53.274722_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=52.0 corr=0 origname=NODE_24_length_78936_cov_51.993278_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=52.0 corr=0 origname=NODE_24_length_78936_cov_51.993278_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00088 len=3610 cov=9.4 corr=0 origname=NODE_88_length_3610_cov_9.431941_pilon sw=shovill-spades/1.1.0 date=20231107	821..3031	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00066 len=7113 cov=108.7 corr=0 origname=NODE_66_length_7113_cov_108.667758_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00013 len=128235 cov=44.0 corr=0 origname=NODE_13_length_128235_cov_43.963229_pilon sw=shovill-spades/1.1.0 date=20231107	120650..121630	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00053 len=15109 cov=40.8 corr=0 origname=NODE_53_length_15109_cov_40.816487_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=128235 cov=44.0 corr=0 origname=NODE_13_length_128235_cov_43.963229_pilon sw=shovill-spades/1.1.0 date=20231107	119597..120589	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=41.9 corr=0 origname=NODE_15_length_124410_cov_41.946694_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=44.9 corr=0 origname=NODE_49_length_21369_cov_44.855908_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00100 len=2568 cov=59.4 corr=0 origname=NODE_100_length_2568_cov_59.426322_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00084 len=3959 cov=57.0 corr=0 origname=NODE_84_length_3959_cov_57.027663_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00030 len=51407 cov=31.5 corr=0 origname=NODE_30_length_51407_cov_31.544041_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183801 cov=43.9 corr=0 origname=NODE_6_length_183801_cov_43.943661_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00027 len=59921 cov=46.4 corr=0 origname=NODE_27_length_59921_cov_46.440883_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=147641 cov=47.3 corr=0 origname=NODE_10_length_147641_cov_47.343795_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.93	9510 / 9510	contig00047 len=22207 cov=10.6 corr=0 origname=NODE_47_length_22207_cov_10.638226_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00121 len=1756 cov=36.7 corr=0 origname=NODE_121_length_1756_cov_36.666066_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00030 len=51407 cov=31.5 corr=0 origname=NODE_30_length_51407_cov_31.544041_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=69.7 corr=0 origname=NODE_94_length_2769_cov_69.672517_pilon sw=shovill-spades/1.1.0 date=20231107	2423..2553	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00040 len=31675 cov=12.5 corr=2 origname=NODE_40_length_31675_cov_12.458017_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00058 len=10589 cov=14.5 corr=0 origname=NODE_58_length_10589_cov_14.464469_pilon sw=shovill-spades/1.1.0 date=20231107	4327..4585	AY458016																					
SAM128631	Escherichia_coli	607279530	4204	0.5006	5.891 KB	291	adk_6,fumC_4,gyrB_7,icd_9,mdh_7,purA_7,recA_56	1080	25:105:105	D	FimH54	29	anr,astA,chuA,csgA,eae-g01-gamma,espA,espY2:000868321,fimH,hlyE,hra,iha,iss,iss,iss,lpfA,lpfA,nleA,nleB,nleB,nleC,nlpI,ompT,ompT,shiB,shiB,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,tir,traJ,traT,traT,traT,yehA,yehB,yehC,yehD	3	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,tet(B)	0		6	Col(pHAD28),IncFIB(AP001918),IncFII(29),IncHI2,IncHI2A,IncI2(Delta)	1	Contig_1_115.691_Circ,	111	7284579	5437653	4189102	112.696	133.965	adk	100	100	adk_6	fumC	100	100	fumC_4	gyrB	100	100	gyrB_7	icd	100	100	icd_9	mdh	100	100	mdh_7	purA	100	100	purA_7	recA	100	100	recA_56	25	105	105	H_fliC	97.27	1320 / 1332	O1_wzx	99.65	1428 / 1428	O2_wzy	99.61	1029 / 1029	anr	95.31	213 / 213	contig02275 len=456 cov=6.9 corr=1 origname=NODE_2313_length_456_cov_6.887671_pilon sw=shovill-spades/1.1.0 date=20231107	26..238	AraC negative regulator	AL391753	astA	100	97 / 117	contig00344 len=5111 cov=5.9 corr=0 origname=NODE_344_length_5111_cov_5.925100_pilon sw=shovill-spades/1.1.0 date=20231107	504..600	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00455 len=3961 cov=7.8 corr=1 origname=NODE_455_length_3961_cov_7.785271_pilon sw=shovill-spades/1.1.0 date=20231107	752..2734	Outer membrane hemin receptor	UGGA01000003	csgA	99.78	456 / 456	contig00023 len=22653 cov=25.6 corr=0 origname=NODE_23_length_22653_cov_25.555580_pilon sw=shovill-spades/1.1.0 date=20231107	17987..18442	curlin major subunit CsgA	CP069646	eae-g01-gamma	100	2805 / 2805	contig00405 len=4382 cov=4.7 corr=2 origname=NODE_405_length_4382_cov_4.669541_pilon sw=shovill-spades/1.1.0 date=20231107	914..3718		44	espA	100	579 / 579	contig00473 len=3810 cov=4.6 corr=1 origname=NODE_473_length_3810_cov_4.636193_pilon sw=shovill-spades/1.1.0 date=20231107	1600..2178	Type III secretions system	AE005174	espY2:000868321	100	570 / 570	contig01163 len=1198 cov=5.8 corr=0 origname=NODE_1170_length_1198_cov_5.769648_pilon sw=shovill-spades/1.1.0 date=20231107	326..895			fimH	100	489 / 489	contig00216 len=7878 cov=37.8 corr=0 origname=NODE_216_length_7878_cov_37.846668_pilon sw=shovill-spades/1.1.0 date=20231107	1195..1683	Type 1 fimbriae		hlyE	99.35	918 / 918	contig00081 len=13428 cov=33.1 corr=0 origname=NODE_81_length_13428_cov_33.131814_pilon sw=shovill-spades/1.1.0 date=20231107	6890..7807	Avian E. coli haemolysin	ECU57430	hra	99.87	747 / 747	contig00543 len=3375 cov=54.8 corr=0 origname=NODE_542_length_3375_cov_54.797199_pilon sw=shovill-spades/1.1.0 date=20231107	1139..1885	Heat-resistant agglutinin	LM995856	iha	100	2091 / 2091	contig00411 len=4304 cov=6.2 corr=0 origname=NODE_411_length_4304_cov_6.164254_pilon sw=shovill-spades/1.1.0 date=20231107	942..3032	Adherence protein	AE005174	iss	99.32	294 / 294	contig00192 len=8704 cov=10.0 corr=1 origname=NODE_192_length_8704_cov_9.991524_pilon sw=shovill-spades/1.1.0 date=20231107	453..746	Increased serum survival	CP001509	iss	98.98	294 / 294	contig01356 len=895 cov=40.1 corr=0 origname=NODE_1374_length_895_cov_40.141791_pilon sw=shovill-spades/1.1.0 date=20231107	257..550	Increased serum survival	CP001665	iss	98.98	294 / 294	contig01356 len=895 cov=40.1 corr=0 origname=NODE_1374_length_895_cov_40.141791_pilon sw=shovill-spades/1.1.0 date=20231107	257..550	Increased serum survival	CP001846	lpfA	99.83	573 / 573	contig00258 len=6526 cov=35.9 corr=0 origname=NODE_258_length_6526_cov_35.887179_pilon sw=shovill-spades/1.1.0 date=20231107	5478..6050	Long polar fimbriae	AP010953	lpfA	99.83	573 / 573	contig00258 len=6526 cov=35.9 corr=0 origname=NODE_258_length_6526_cov_35.887179_pilon sw=shovill-spades/1.1.0 date=20231107	5478..6050	Long polar fimbriae	CP002185	nleA	99.92	1326 / 1326	contig00344 len=5111 cov=5.9 corr=0 origname=NODE_344_length_5111_cov_5.925100_pilon sw=shovill-spades/1.1.0 date=20231107	2719..4044	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00202 len=8364 cov=10.7 corr=0 origname=NODE_202_length_8364_cov_10.696966_pilon sw=shovill-spades/1.1.0 date=20231107	4208..5188	Non-LEE encoded effector B	AE005174	nleB	99.8	990 / 990	contig00470 len=3817 cov=4.4 corr=2 origname=NODE_471_length_3817_cov_4.395598_pilon sw=shovill-spades/1.1.0 date=20231107	903..1892	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00202 len=8364 cov=10.7 corr=0 origname=NODE_202_length_8364_cov_10.696966_pilon sw=shovill-spades/1.1.0 date=20231107	3155..4147	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00317 len=5483 cov=36.9 corr=0 origname=NODE_317_length_5483_cov_36.855156_pilon sw=shovill-spades/1.1.0 date=20231107	1454..2338	lipoprotein NlpI precursor	CP000243	ompT	96.41	948 / 948	contig00103 len=11965 cov=19.8 corr=0 origname=NODE_103_length_11965_cov_19.784740_pilon sw=shovill-spades/1.1.0 date=20231107	3945..4892	Outer membrane protease (protein protease 7)	CDLB01000100	ompT	100	954 / 954	contig00512 len=3541 cov=33.3 corr=0 origname=NODE_512_length_3541_cov_33.334783_pilon sw=shovill-spades/1.1.0 date=20231107	2020..2973	Outer membrane protease (protein protease 7)	JHDO01000060	shiB	96.73	428 / 462	contig00309 len=5578 cov=28.7 corr=0 origname=NODE_309_length_5578_cov_28.735557_pilon sw=shovill-spades/1.1.0 date=20231107	3080..3507	homologs of the Shigella flexneri SHI-2 pathogenicity island gene shiA	AAD44732	shiB	96.73	428 / 462	contig00475 len=3796 cov=22.9 corr=0 origname=NODE_475_length_3796_cov_22.864777_pilon sw=shovill-spades/1.1.0 date=20231107	643..1070	homologs of the Shigella flexneri SHI-2 pathogenicity island gene shiA	AAD44732	stx1a-O157-GPU96MM	100	1227 / 1227	contig00681 len=2568 cov=7.6 corr=0 origname=NODE_681_length_2568_cov_7.628179_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00635 len=2775 cov=5.6 corr=0 origname=NODE_635_length_2775_cov_5.632638_pilon sw=shovill-spades/1.1.0 date=20231107	146..1386	stx2c-O157-FLY16	AB015057	terC	100	714 / 714	contig00047 len=16437 cov=45.3 corr=0 origname=NODE_47_length_16437_cov_45.333965_pilon sw=shovill-spades/1.1.0 date=20231107	4625..5338	Tellurium ion resistance protein	CP007491	terC	98.96	966 / 966	contig00102 len=12119 cov=36.0 corr=0 origname=NODE_102_length_12119_cov_35.960841_pilon sw=shovill-spades/1.1.0 date=20231107	2020..2985	Tellurium ion resistance protein	MG591698	tir	100	1443 / 1695	contig00522 len=3480 cov=5.3 corr=0 origname=NODE_522_length_3480_cov_5.304515_pilon sw=shovill-spades/1.1.0 date=20231107	2031..3473	Translocated intimin receptor protein	EU871626	traJ	98.84	687 / 687	contig00009 len=30837 cov=30.2 corr=0 origname=NODE_9_length_30837_cov_30.211475_pilon sw=shovill-spades/1.1.0 date=20231107	541..1227	Protein TraJ (Positive regulator of conjugal transfer operon)	CP007150	traT	100	423 / 423	contig00593 len=3037 cov=4.7 corr=2 origname=NODE_594_length_3037_cov_4.721996_pilon sw=shovill-spades/1.1.0 date=20231107	1572..1994	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00902 len=1769 cov=4.3 corr=0 origname=NODE_906_length_1769_cov_4.257449_pilon sw=shovill-spades/1.1.0 date=20231107	776..904	Outer membrane protein complement resistance	AMTE01000156	traT	100	732 / 732	contig00009 len=30837 cov=30.2 corr=0 origname=NODE_9_length_30837_cov_30.211475_pilon sw=shovill-spades/1.1.0 date=20231107	22212..22943	Outer membrane protein complement resistance	CP010345	yehA	97.29	1035 / 1035	contig00059 len=15452 cov=39.7 corr=0 origname=NODE_59_length_15452_cov_39.669878_pilon sw=shovill-spades/1.1.0 date=20231107	160..1194	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	yehB	99.03	2482 / 2481	contig00059 len=15452 cov=39.7 corr=0 origname=NODE_59_length_15452_cov_39.669878_pilon sw=shovill-spades/1.1.0 date=20231107	1210..3691	Usher, YHD fimbriael cluster	CP042934	yehC	97.78	675 / 675	contig00059 len=15452 cov=39.7 corr=0 origname=NODE_59_length_15452_cov_39.669878_pilon sw=shovill-spades/1.1.0 date=20231107	3707..4381	Chaperone, YHD fimbriael cluster	CP042934	yehD	98.71	543 / 543	contig00059 len=15452 cov=39.7 corr=0 origname=NODE_59_length_15452_cov_39.669878_pilon sw=shovill-spades/1.1.0 date=20231107	4461..5003	Major pilin subunit, YHD fimbriael cluster	CP042934															aph(6)-Id	100	837/837	contig00001 len=87414 cov=18.0 corr=2 origname=NODE_1_length_87414_cov_18.001111_pilon sw=shovill-spades/1.1.0 date=20231107	77954..78790	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00001 len=87414 cov=18.0 corr=2 origname=NODE_1_length_87414_cov_18.001111_pilon sw=shovill-spades/1.1.0 date=20231107	77152..77954	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00001 len=87414 cov=18.0 corr=2 origname=NODE_1_length_87414_cov_18.001111_pilon sw=shovill-spades/1.1.0 date=20231107	77151..77954	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00001 len=87414 cov=18.0 corr=2 origname=NODE_1_length_87414_cov_18.001111_pilon sw=shovill-spades/1.1.0 date=20231107	77151..77954	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00001 len=87414 cov=18.0 corr=2 origname=NODE_1_length_87414_cov_18.001111_pilon sw=shovill-spades/1.1.0 date=20231107	77151..77954	Streptomycin	AF321550	tet(B)	100	1206/1206	contig00001 len=87414 cov=18.0 corr=2 origname=NODE_1_length_87414_cov_18.001111_pilon sw=shovill-spades/1.1.0 date=20231107	3545..4750	Doxycycline, Tetracycline, Minocycline	AF326777													enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00637 len=2769 cov=8.6 corr=0 origname=NODE_637_length_2769_cov_8.610904_pilon sw=shovill-spades/1.1.0 date=20231107	1042..1172	KU674895	enterobacteriales	IncFIB(AP001918)	99.71	682 / 682	contig00103 len=11965 cov=19.8 corr=0 origname=NODE_103_length_11965_cov_19.784740_pilon sw=shovill-spades/1.1.0 date=20231107	8641..9322	AP001918	enterobacteriales	IncFII(29)	96.14	259 / 259	contig00123 len=11209 cov=22.9 corr=0 origname=NODE_123_length_11209_cov_22.940187_pilon sw=shovill-spades/1.1.0 date=20231107	2251..2508	CP003035	enterobacteriales	IncHI2	100	327 / 327	contig00002 len=57143 cov=15.9 corr=1 origname=NODE_2_length_57143_cov_15.894184_pilon sw=shovill-spades/1.1.0 date=20231107	233..559	BX664015	enterobacteriales	IncHI2A	99.52	630 / 630	contig00002 len=57143 cov=15.9 corr=1 origname=NODE_2_length_57143_cov_15.894184_pilon sw=shovill-spades/1.1.0 date=20231107	15427..16056	BX664015	enterobacteriales	IncI2(Delta)	98.14	322 / 316	contig00007 len=35126 cov=22.2 corr=0 origname=NODE_7_length_35126_cov_22.181932_pilon sw=shovill-spades/1.1.0 date=20231107	30037..30358	AP002527
SAM128632	Escherichia_coli	786283212	729	0.5024	142.106 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	28	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,tccP,tccP,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_213.558_Circ,	152	5484994	5153207	5440092	154.482	106.438	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00068 len=7013 cov=132.7 corr=0 origname=NODE_68_length_7013_cov_132.688818_pilon sw=shovill-spades/1.1.0 date=20231107	6416..6512	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314454 cov=56.9 corr=0 origname=NODE_1_length_314454_cov_56.906077_pilon sw=shovill-spades/1.1.0 date=20231107	113529..115511	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145661 cov=48.4 corr=0 origname=NODE_13_length_145661_cov_48.398915_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00041 len=31679 cov=21.7 corr=0 origname=NODE_41_length_31679_cov_21.687381_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145661 cov=48.4 corr=0 origname=NODE_13_length_145661_cov_48.398915_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145661 cov=48.4 corr=0 origname=NODE_13_length_145661_cov_48.398915_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00029 len=58841 cov=45.9 corr=0 origname=NODE_29_length_58841_cov_45.928272_pilon sw=shovill-spades/1.1.0 date=20231107	1374..2027	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00056 len=11488 cov=19.9 corr=0 origname=NODE_56_length_11488_cov_19.900939_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=227891 cov=54.2 corr=0 origname=NODE_4_length_227891_cov_54.248740_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00041 len=31679 cov=21.7 corr=0 origname=NODE_41_length_31679_cov_21.687381_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00015 len=141674 cov=45.8 corr=0 origname=NODE_15_length_141674_cov_45.764831_pilon sw=shovill-spades/1.1.0 date=20231107	94467..94955	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314454 cov=56.9 corr=0 origname=NODE_1_length_314454_cov_56.906077_pilon sw=shovill-spades/1.1.0 date=20231107	95259..96659	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00047 len=21369 cov=51.4 corr=0 origname=NODE_47_length_21369_cov_51.377103_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=39.2 corr=0 origname=NODE_33_length_51407_cov_39.203426_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00040 len=33255 cov=57.7 corr=0 origname=NODE_40_length_33255_cov_57.664697_pilon sw=shovill-spades/1.1.0 date=20231107	28970..29263	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00054 len=14532 cov=85.1 corr=0 origname=NODE_54_length_14532_cov_85.095007_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=61.3 corr=0 origname=NODE_24_length_78936_cov_61.305739_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=61.3 corr=0 origname=NODE_24_length_78936_cov_61.305739_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00085 len=3658 cov=14.7 corr=0 origname=NODE_85_length_3658_cov_14.702551_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00068 len=7013 cov=132.7 corr=0 origname=NODE_68_length_7013_cov_132.688818_pilon sw=shovill-spades/1.1.0 date=20231107	2972..4297	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244637 cov=45.1 corr=0 origname=NODE_3_length_244637_cov_45.137921_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15109 cov=53.6 corr=0 origname=NODE_52_length_15109_cov_53.599547_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244637 cov=45.1 corr=0 origname=NODE_3_length_244637_cov_45.137921_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=127491 cov=55.8 corr=0 origname=NODE_16_length_127491_cov_55.775667_pilon sw=shovill-spades/1.1.0 date=20231107	110496..111380	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00047 len=21369 cov=51.4 corr=0 origname=NODE_47_length_21369_cov_51.377103_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3446 cov=78.5 corr=0 origname=NODE_87_length_3446_cov_78.450969_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00082 len=3959 cov=94.6 corr=0 origname=NODE_82_length_3959_cov_94.571872_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	tccP	100	852 / 1014	contig00029 len=58841 cov=45.9 corr=0 origname=NODE_29_length_58841_cov_45.928272_pilon sw=shovill-spades/1.1.0 date=20231107	198..1049	Tir-cytoskeleton coupling protein	AB253537	tccP	100	852 / 1014	contig00029 len=58841 cov=45.9 corr=0 origname=NODE_29_length_58841_cov_45.928272_pilon sw=shovill-spades/1.1.0 date=20231107	198..1049	Tir-cytoskeleton coupling protein	CP001368	terC	100	1041 / 1041	contig00033 len=51407 cov=39.2 corr=0 origname=NODE_33_length_51407_cov_39.203426_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00009 len=183791 cov=49.9 corr=0 origname=NODE_9_length_183791_cov_49.925727_pilon sw=shovill-spades/1.1.0 date=20231107	22926..23639	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00011 len=160492 cov=53.7 corr=0 origname=NODE_11_length_160492_cov_53.725469_pilon sw=shovill-spades/1.1.0 date=20231107	105521..106484	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145661 cov=48.4 corr=0 origname=NODE_13_length_145661_cov_48.398915_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.92	7873 / 9510	contig00048 len=20396 cov=17.6 corr=1 origname=NODE_48_length_20396_cov_17.593056_pilon sw=shovill-spades/1.1.0 date=20231107	1..7873	Toxin B	AB011549	traT	100	423 / 423	contig00092 len=2786 cov=35.2 corr=0 origname=NODE_92_length_2786_cov_35.216698_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=39.2 corr=0 origname=NODE_33_length_51407_cov_39.203426_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																			enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=100.2 corr=0 origname=NODE_93_length_2769_cov_100.203137_pilon sw=shovill-spades/1.1.0 date=20231107	2472..2602	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00041 len=31679 cov=21.7 corr=0 origname=NODE_41_length_31679_cov_21.687381_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=9309 cov=24.6 corr=0 origname=NODE_61_length_9309_cov_24.586244_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128633	Escherichia_coli	701578020	728	0.4925	145.661 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	3	Contig_1_314.569_Circ,,Contig_2_136.369_Circ,,Contig_3_44.9631_Circ,	130	5831567	5361553	4850058	132.358	108.766	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=5108 cov=46.1 corr=0 origname=NODE_73_length_5108_cov_46.081523_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314496 cov=38.5 corr=0 origname=NODE_3_length_314496_cov_38.483555_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145661 cov=36.1 corr=0 origname=NODE_13_length_145661_cov_36.139946_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00044 len=31677 cov=77.5 corr=0 origname=NODE_44_length_31677_cov_77.486893_pilon sw=shovill-spades/1.1.0 date=20231107	17505..20501	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145661 cov=36.1 corr=0 origname=NODE_13_length_145661_cov_36.139946_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145661 cov=36.1 corr=0 origname=NODE_13_length_145661_cov_36.139946_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56948 cov=33.1 corr=0 origname=NODE_32_length_56948_cov_33.089136_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00058 len=11488 cov=57.6 corr=0 origname=NODE_58_length_11488_cov_57.623234_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=445324 cov=37.1 corr=0 origname=NODE_1_length_445324_cov_37.122612_pilon sw=shovill-spades/1.1.0 date=20231107	297893..298462			etpD	100	1758 / 1758	contig00044 len=31677 cov=77.5 corr=0 origname=NODE_44_length_31677_cov_77.486893_pilon sw=shovill-spades/1.1.0 date=20231107	4568..6325	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=445324 cov=37.1 corr=0 origname=NODE_1_length_445324_cov_37.122612_pilon sw=shovill-spades/1.1.0 date=20231107	122671..123159	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314496 cov=38.5 corr=0 origname=NODE_3_length_314496_cov_38.483555_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21369 cov=30.5 corr=0 origname=NODE_50_length_21369_cov_30.542579_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=30.0 corr=0 origname=NODE_34_length_51407_cov_29.977317_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=30.9 corr=0 origname=NODE_43_length_33152_cov_30.859079_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00056 len=14487 cov=51.6 corr=0 origname=NODE_56_length_14487_cov_51.637260_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=41.2 corr=0 origname=NODE_24_length_78936_cov_41.167772_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=41.2 corr=0 origname=NODE_24_length_78936_cov_41.167772_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00083 len=3725 cov=57.2 corr=0 origname=NODE_83_length_3725_cov_57.221519_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00073 len=5108 cov=46.1 corr=0 origname=NODE_73_length_5108_cov_46.081523_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00004 len=244736 cov=32.5 corr=0 origname=NODE_4_length_244736_cov_32.538858_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=40.6 corr=0 origname=NODE_54_length_15109_cov_40.611200_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00004 len=244736 cov=32.5 corr=0 origname=NODE_4_length_244736_cov_32.538858_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=127491 cov=44.7 corr=0 origname=NODE_16_length_127491_cov_44.693878_pilon sw=shovill-spades/1.1.0 date=20231107	110496..111380	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21369 cov=30.5 corr=0 origname=NODE_50_length_21369_cov_30.542579_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00096 len=2397 cov=42.0 corr=0 origname=NODE_96_length_2397_cov_41.953166_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00079 len=3959 cov=53.2 corr=0 origname=NODE_79_length_3959_cov_53.210703_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=30.0 corr=0 origname=NODE_34_length_51407_cov_29.977317_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183634 cov=34.5 corr=0 origname=NODE_8_length_183634_cov_34.479795_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59935 cov=37.4 corr=0 origname=NODE_29_length_59935_cov_37.364849_pilon sw=shovill-spades/1.1.0 date=20231107	4964..5927	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145661 cov=36.1 corr=0 origname=NODE_13_length_145661_cov_36.139946_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00049 len=22666 cov=57.8 corr=0 origname=NODE_49_length_22666_cov_57.824806_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00108 len=1756 cov=27.1 corr=0 origname=NODE_108_length_1756_cov_27.096697_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=30.0 corr=0 origname=NODE_34_length_51407_cov_29.977317_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00092 len=2769 cov=64.2 corr=0 origname=NODE_92_length_2769_cov_64.202390_pilon sw=shovill-spades/1.1.0 date=20231107	2313..2443	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31677 cov=77.5 corr=0 origname=NODE_44_length_31677_cov_77.486893_pilon sw=shovill-spades/1.1.0 date=20231107	26609..27290	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=9309 cov=79.8 corr=0 origname=NODE_61_length_9309_cov_79.772510_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128634	Escherichia_coli	523552458	743	0.5024	126.461 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_206.736_Circ,,Contig_2_47.8397_Circ,	112	5480679	4649336	3621432	113.93	117.88	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=5109 cov=31.8 corr=0 origname=NODE_73_length_5109_cov_31.786768_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314531 cov=37.4 corr=0 origname=NODE_1_length_314531_cov_37.425356_pilon sw=shovill-spades/1.1.0 date=20231107	113730..115712	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145611 cov=29.9 corr=0 origname=NODE_13_length_145611_cov_29.949052_pilon sw=shovill-spades/1.1.0 date=20231107	135894..138698		44	ehxA	100	2997 / 2997	contig00044 len=31677 cov=81.1 corr=0 origname=NODE_44_length_31677_cov_81.133414_pilon sw=shovill-spades/1.1.0 date=20231107	17505..20501	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145611 cov=29.9 corr=0 origname=NODE_13_length_145611_cov_29.949052_pilon sw=shovill-spades/1.1.0 date=20231107	141439..142017	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145611 cov=29.9 corr=0 origname=NODE_13_length_145611_cov_29.949052_pilon sw=shovill-spades/1.1.0 date=20231107	143175..144113	Secreted protein B	AE005174	espJ	100	654 / 654	contig00042 len=33840 cov=29.2 corr=0 origname=NODE_42_length_33840_cov_29.166968_pilon sw=shovill-spades/1.1.0 date=20231107	32478..33131	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=77.8 corr=0 origname=NODE_59_length_11488_cov_77.785645_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=36.8 corr=0 origname=NODE_3_length_227891_cov_36.792884_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00044 len=31677 cov=81.1 corr=0 origname=NODE_44_length_31677_cov_81.133414_pilon sw=shovill-spades/1.1.0 date=20231107	4568..6325	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217428 cov=30.4 corr=0 origname=NODE_4_length_217428_cov_30.420858_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314531 cov=37.4 corr=0 origname=NODE_1_length_314531_cov_37.425356_pilon sw=shovill-spades/1.1.0 date=20231107	95460..96860	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21369 cov=30.5 corr=0 origname=NODE_50_length_21369_cov_30.485760_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00036 len=43525 cov=22.5 corr=0 origname=NODE_36_length_43525_cov_22.489386_pilon sw=shovill-spades/1.1.0 date=20231107	10160..12250	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=32.4 corr=0 origname=NODE_43_length_33152_cov_32.435680_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00056 len=14693 cov=61.5 corr=0 origname=NODE_56_length_14693_cov_61.472059_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=38.2 corr=0 origname=NODE_24_length_78936_cov_38.183233_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=38.2 corr=0 origname=NODE_24_length_78936_cov_38.183233_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00084 len=3725 cov=52.9 corr=0 origname=NODE_84_length_3725_cov_52.863786_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00073 len=5109 cov=31.8 corr=0 origname=NODE_73_length_5109_cov_31.786768_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=28.4 corr=0 origname=NODE_2_length_244736_cov_28.358846_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=29.1 corr=0 origname=NODE_55_length_15109_cov_29.083433_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=28.4 corr=0 origname=NODE_2_length_244736_cov_28.358846_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124411 cov=33.4 corr=0 origname=NODE_16_length_124411_cov_33.388369_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21369 cov=30.5 corr=0 origname=NODE_50_length_21369_cov_30.485760_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00099 len=2397 cov=40.0 corr=0 origname=NODE_99_length_2397_cov_39.978317_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00081 len=3959 cov=44.1 corr=0 origname=NODE_81_length_3959_cov_44.059979_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00036 len=43525 cov=22.5 corr=0 origname=NODE_36_length_43525_cov_22.489386_pilon sw=shovill-spades/1.1.0 date=20231107	14845..15885	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183691 cov=29.7 corr=0 origname=NODE_8_length_183691_cov_29.702582_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59970 cov=33.8 corr=0 origname=NODE_29_length_59970_cov_33.770404_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145611 cov=29.9 corr=0 origname=NODE_13_length_145611_cov_29.949052_pilon sw=shovill-spades/1.1.0 date=20231107	133532..135226	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00049 len=22666 cov=65.9 corr=0 origname=NODE_49_length_22666_cov_65.913931_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00114 len=1756 cov=22.9 corr=0 origname=NODE_114_length_1756_cov_22.906907_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00036 len=43525 cov=22.5 corr=0 origname=NODE_36_length_43525_cov_22.489386_pilon sw=shovill-spades/1.1.0 date=20231107	34452..34580	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00091 len=2769 cov=97.9 corr=0 origname=NODE_91_length_2769_cov_97.864078_pilon sw=shovill-spades/1.1.0 date=20231107	331..461	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31677 cov=81.1 corr=0 origname=NODE_44_length_31677_cov_81.133414_pilon sw=shovill-spades/1.1.0 date=20231107	26609..27290	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00063 len=9309 cov=92.1 corr=0 origname=NODE_63_length_9309_cov_92.120525_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128635	Escherichia_coli	474879548	671	0.5025	119.83 KB	17	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_139.517_Circ,	108	5461802	4372474	3285678	109.932	124.913	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	99.93	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00085 len=7013 cov=75.1 corr=0 origname=NODE_85_length_7013_cov_75.142444_pilon sw=shovill-spades/1.1.0 date=20231107	6416..6512	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00004 len=217533 cov=33.1 corr=0 origname=NODE_4_length_217533_cov_33.125289_pilon sw=shovill-spades/1.1.0 date=20231107	198536..200518	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00053 len=25051 cov=19.2 corr=0 origname=NODE_53_length_25051_cov_19.221755_pilon sw=shovill-spades/1.1.0 date=20231107	14269..17073		44	ehxA	100	2997 / 2997	contig00046 len=31687 cov=50.1 corr=0 origname=NODE_46_length_31687_cov_50.131947_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00053 len=25051 cov=19.2 corr=0 origname=NODE_53_length_25051_cov_19.221755_pilon sw=shovill-spades/1.1.0 date=20231107	19814..20392	Type III secretions system	AE005174	espB	100	939 / 939	contig00053 len=25051 cov=19.2 corr=0 origname=NODE_53_length_25051_cov_19.221755_pilon sw=shovill-spades/1.1.0 date=20231107	21550..22488	Secreted protein B	AE005174	espJ	100	654 / 654	contig00076 len=8260 cov=14.7 corr=0 origname=NODE_76_length_8260_cov_14.707675_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00069 len=11488 cov=31.9 corr=0 origname=NODE_69_length_11488_cov_31.887251_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=227891 cov=36.7 corr=0 origname=NODE_2_length_227891_cov_36.701479_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00046 len=31687 cov=50.1 corr=0 origname=NODE_46_length_31687_cov_50.131947_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=218243 cov=26.9 corr=0 origname=NODE_3_length_218243_cov_26.909613_pilon sw=shovill-spades/1.1.0 date=20231107	123390..123878	Type 1 fimbriae		gad	100	1270 / 1401	contig00019 len=96426 cov=35.7 corr=0 origname=NODE_19_length_96426_cov_35.720963_pilon sw=shovill-spades/1.1.0 date=20231107	95157..96426	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00058 len=21369 cov=29.8 corr=0 origname=NODE_58_length_21369_cov_29.798336_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00040 len=43526 cov=21.1 corr=0 origname=NODE_40_length_43526_cov_21.110280_pilon sw=shovill-spades/1.1.0 date=20231107	10161..12251	Adherence protein	AE005174	iss	98.3	294 / 294	contig00057 len=21503 cov=55.3 corr=0 origname=NODE_57_length_21503_cov_55.349710_pilon sw=shovill-spades/1.1.0 date=20231107	3102..3395	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00084 len=7178 cov=43.4 corr=0 origname=NODE_84_length_7178_cov_43.361648_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78937 cov=35.5 corr=0 origname=NODE_23_length_78937_cov_35.459960_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78937 cov=35.5 corr=0 origname=NODE_23_length_78937_cov_35.459960_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00065 len=13382 cov=54.1 corr=0 origname=NODE_65_length_13382_cov_54.088330_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00085 len=7013 cov=75.1 corr=0 origname=NODE_85_length_7013_cov_75.142444_pilon sw=shovill-spades/1.1.0 date=20231107	2972..4297	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00001 len=244671 cov=27.1 corr=0 origname=NODE_1_length_244671_cov_27.095969_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00062 len=15109 cov=19.8 corr=0 origname=NODE_62_length_15109_cov_19.756759_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00001 len=244671 cov=27.1 corr=0 origname=NODE_1_length_244671_cov_27.095969_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124425 cov=31.5 corr=0 origname=NODE_16_length_124425_cov_31.452354_pilon sw=shovill-spades/1.1.0 date=20231107	16127..17011	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00058 len=21369 cov=29.8 corr=0 origname=NODE_58_length_21369_cov_29.798336_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00063 len=14466 cov=24.9 corr=0 origname=NODE_63_length_14466_cov_24.923548_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00098 len=3959 cov=37.1 corr=0 origname=NODE_98_length_3959_cov_37.131334_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00040 len=43526 cov=21.1 corr=0 origname=NODE_40_length_43526_cov_21.110280_pilon sw=shovill-spades/1.1.0 date=20231107	14846..15886	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00035 len=49231 cov=26.3 corr=0 origname=NODE_35_length_49231_cov_26.322446_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00008 len=160523 cov=32.2 corr=0 origname=NODE_8_length_160523_cov_32.179983_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00053 len=25051 cov=19.2 corr=0 origname=NODE_53_length_25051_cov_19.221755_pilon sw=shovill-spades/1.1.0 date=20231107	11907..13601	Translocated intimin receptor protein	EU871626	toxB	99.92	9510 / 9510	contig00055 len=22881 cov=38.1 corr=0 origname=NODE_55_length_22881_cov_38.097192_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00130 len=1756 cov=16.7 corr=0 origname=NODE_130_length_1756_cov_16.651652_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00040 len=43526 cov=21.1 corr=0 origname=NODE_40_length_43526_cov_21.110280_pilon sw=shovill-spades/1.1.0 date=20231107	34453..34581	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00107 len=2769 cov=64.6 corr=0 origname=NODE_107_length_2769_cov_64.561240_pilon sw=shovill-spades/1.1.0 date=20231107	2441..2571	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00046 len=31687 cov=50.1 corr=0 origname=NODE_46_length_31687_cov_50.131947_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=13382 cov=54.1 corr=0 origname=NODE_65_length_13382_cov_54.088330_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128636	Escherichia_coli	612797328	711	0.5024	124.634 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_134.178_Circ,	126	5479599	4837477	4240670	128.285	113.273	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5108 cov=37.6 corr=0 origname=NODE_76_length_5108_cov_37.620291_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314656 cov=43.5 corr=0 origname=NODE_1_length_314656_cov_43.503508_pilon sw=shovill-spades/1.1.0 date=20231107	113731..115713	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146585 cov=36.0 corr=0 origname=NODE_12_length_146585_cov_35.970463_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00041 len=31690 cov=71.4 corr=0 origname=NODE_41_length_31690_cov_71.396437_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146585 cov=36.0 corr=0 origname=NODE_12_length_146585_cov_35.970463_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146585 cov=36.0 corr=0 origname=NODE_12_length_146585_cov_35.970463_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56948 cov=33.2 corr=0 origname=NODE_32_length_56948_cov_33.161000_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00058 len=11488 cov=46.9 corr=0 origname=NODE_58_length_11488_cov_46.940511_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=43.4 corr=0 origname=NODE_3_length_227891_cov_43.443569_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00041 len=31690 cov=71.4 corr=0 origname=NODE_41_length_31690_cov_71.396437_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217428 cov=35.4 corr=0 origname=NODE_4_length_217428_cov_35.430341_pilon sw=shovill-spades/1.1.0 date=20231107	122575..123063	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314656 cov=43.5 corr=0 origname=NODE_1_length_314656_cov_43.503508_pilon sw=shovill-spades/1.1.0 date=20231107	95461..96861	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00002 len=248828 cov=35.5 corr=1 origname=NODE_2_length_248828_cov_35.453041_pilon sw=shovill-spades/1.1.0 date=20231107	64272..65672	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=44.0 corr=0 origname=NODE_51_length_21369_cov_44.003431_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=27.0 corr=0 origname=NODE_33_length_51407_cov_26.985287_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00054 len=15156 cov=77.9 corr=0 origname=NODE_54_length_15156_cov_77.868570_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00072 len=7178 cov=47.8 corr=0 origname=NODE_72_length_7178_cov_47.762523_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78937 cov=44.3 corr=0 origname=NODE_25_length_78937_cov_44.324709_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78937 cov=44.3 corr=0 origname=NODE_25_length_78937_cov_44.324709_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00056 len=13383 cov=74.1 corr=0 origname=NODE_56_length_13383_cov_74.139558_pilon sw=shovill-spades/1.1.0 date=20231107	10594..12804	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5108 cov=37.6 corr=0 origname=NODE_76_length_5108_cov_37.620291_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00018 len=116224 cov=38.9 corr=0 origname=NODE_18_length_116224_cov_38.882695_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=34.0 corr=0 origname=NODE_55_length_15109_cov_33.972633_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00018 len=116224 cov=38.9 corr=0 origname=NODE_18_length_116224_cov_38.882695_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=40.2 corr=0 origname=NODE_16_length_124410_cov_40.160136_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=44.0 corr=0 origname=NODE_51_length_21369_cov_44.003431_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00052 len=19625 cov=41.8 corr=0 origname=NODE_52_length_19625_cov_41.833470_pilon sw=shovill-spades/1.1.0 date=20231107	17367..18593	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=55.3 corr=0 origname=NODE_83_length_3959_cov_55.318769_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=27.0 corr=0 origname=NODE_33_length_51407_cov_26.985287_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183917 cov=35.4 corr=0 origname=NODE_7_length_183917_cov_35.351697_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=60205 cov=41.7 corr=0 origname=NODE_29_length_60205_cov_41.700003_pilon sw=shovill-spades/1.1.0 date=20231107	4980..5943	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146585 cov=36.0 corr=0 origname=NODE_12_length_146585_cov_35.970463_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00049 len=22666 cov=55.3 corr=0 origname=NODE_49_length_22666_cov_55.267774_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00092 len=2786 cov=23.3 corr=0 origname=NODE_92_length_2786_cov_23.281262_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=27.0 corr=0 origname=NODE_33_length_51407_cov_26.985287_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=62.4 corr=0 origname=NODE_93_length_2769_cov_62.351008_pilon sw=shovill-spades/1.1.0 date=20231107	695..825	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00041 len=31690 cov=71.4 corr=0 origname=NODE_41_length_31690_cov_71.396437_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00056 len=13383 cov=74.1 corr=0 origname=NODE_56_length_13383_cov_74.139558_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128637	Escherichia_coli	388766092	732	0.5025	102.069 KB	17	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	25	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_39.0896_Circ,	93	5459954	4163073	2691184	94.587	131.152	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00081 len=5109 cov=31.3 corr=0 origname=NODE_81_length_5109_cov_31.314468_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=217941 cov=26.1 corr=0 origname=NODE_2_length_217941_cov_26.127468_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00009 len=145661 cov=24.2 corr=0 origname=NODE_9_length_145661_cov_24.233750_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	99.97	2997 / 2997	contig00046 len=31679 cov=17.2 corr=0 origname=NODE_46_length_31679_cov_17.174180_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00009 len=145661 cov=24.2 corr=0 origname=NODE_9_length_145661_cov_24.233750_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00009 len=145661 cov=24.2 corr=0 origname=NODE_9_length_145661_cov_24.233750_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00045 len=33778 cov=23.1 corr=0 origname=NODE_45_length_33778_cov_23.069760_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.87	3182 / 3903	contig00065 len=10523 cov=12.8 corr=0 origname=NODE_65_length_10523_cov_12.763037_pilon sw=shovill-spades/1.1.0 date=20231107	4..3185	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444771 cov=25.5 corr=3 origname=NODE_1_length_444771_cov_25.457718_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00046 len=31679 cov=17.2 corr=0 origname=NODE_46_length_31679_cov_17.174180_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444771 cov=25.5 corr=3 origname=NODE_1_length_444771_cov_25.457718_pilon sw=shovill-spades/1.1.0 date=20231107	322166..322654	Type 1 fimbriae		hlyE	98.47	918 / 918	contig00055 len=21369 cov=20.8 corr=0 origname=NODE_55_length_21369_cov_20.814503_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00039 len=43524 cov=19.7 corr=0 origname=NODE_39_length_43524_cov_19.749062_pilon sw=shovill-spades/1.1.0 date=20231107	10160..12250	Adherence protein	AE005174	iss	98.3	294 / 294	contig00054 len=21529 cov=50.3 corr=0 origname=NODE_54_length_21529_cov_50.294990_pilon sw=shovill-spades/1.1.0 date=20231107	18109..18402	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00087 len=4264 cov=38.9 corr=0 origname=NODE_87_length_4264_cov_38.887611_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=30.3 corr=0 origname=NODE_24_length_78936_cov_30.291242_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=30.3 corr=0 origname=NODE_24_length_78936_cov_30.291242_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00062 len=13383 cov=17.5 corr=0 origname=NODE_62_length_13383_cov_17.488941_pilon sw=shovill-spades/1.1.0 date=20231107	10594..12804	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00081 len=5109 cov=31.3 corr=0 origname=NODE_81_length_5109_cov_31.314468_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00012 len=124654 cov=24.5 corr=0 origname=NODE_12_length_124654_cov_24.523631_pilon sw=shovill-spades/1.1.0 date=20231107	3068..4048	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00061 len=15109 cov=22.7 corr=0 origname=NODE_61_length_15109_cov_22.714742_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00012 len=124654 cov=24.5 corr=0 origname=NODE_12_length_124654_cov_24.523631_pilon sw=shovill-spades/1.1.0 date=20231107	4109..5101	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00013 len=124411 cov=23.6 corr=0 origname=NODE_13_length_124411_cov_23.622836_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00055 len=21369 cov=20.8 corr=0 origname=NODE_55_length_21369_cov_20.814503_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00111 len=2457 cov=33.5 corr=0 origname=NODE_111_length_2457_cov_33.513525_pilon sw=shovill-spades/1.1.0 date=20231107	922..2148	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00094 len=3959 cov=34.7 corr=0 origname=NODE_94_length_3959_cov_34.677353_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00039 len=43524 cov=19.7 corr=0 origname=NODE_39_length_43524_cov_19.749062_pilon sw=shovill-spades/1.1.0 date=20231107	14844..15884	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00035 len=49087 cov=23.2 corr=0 origname=NODE_35_length_49087_cov_23.163381_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00030 len=60197 cov=25.9 corr=0 origname=NODE_30_length_60197_cov_25.882857_pilon sw=shovill-spades/1.1.0 date=20231107	4972..5935	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00009 len=145661 cov=24.2 corr=0 origname=NODE_9_length_145661_cov_24.233750_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00139 len=1756 cov=19.7 corr=0 origname=NODE_139_length_1756_cov_19.660060_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00039 len=43524 cov=19.7 corr=0 origname=NODE_39_length_43524_cov_19.749062_pilon sw=shovill-spades/1.1.0 date=20231107	34451..34579	Outer membrane protein complement resistance	AMTE01000156																																																																																																															enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00104 len=2769 cov=18.4 corr=0 origname=NODE_104_length_2769_cov_18.431292_pilon sw=shovill-spades/1.1.0 date=20231107	2401..2531	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00046 len=31679 cov=17.2 corr=0 origname=NODE_46_length_31679_cov_17.174180_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=13383 cov=17.5 corr=0 origname=NODE_62_length_13383_cov_17.488941_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128638	Escherichia_coli	546354094	729	0.5024	128.429 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_165.197_Circ,	114	5479404	4761101	3779674	116.16	115.086	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00078 len=5108 cov=49.7 corr=0 origname=NODE_78_length_5108_cov_49.662747_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=282841 cov=35.2 corr=0 origname=NODE_1_length_282841_cov_35.187187_pilon sw=shovill-spades/1.1.0 date=20231107	81916..83898	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=146726 cov=33.3 corr=0 origname=NODE_11_length_146726_cov_33.295557_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00045 len=30445 cov=18.4 corr=0 origname=NODE_45_length_30445_cov_18.368518_pilon sw=shovill-spades/1.1.0 date=20231107	17509..20505	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=146726 cov=33.3 corr=0 origname=NODE_11_length_146726_cov_33.295557_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=146726 cov=33.3 corr=0 origname=NODE_11_length_146726_cov_33.295557_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56948 cov=30.1 corr=0 origname=NODE_32_length_56948_cov_30.080359_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=12.2 corr=0 origname=NODE_61_length_11488_cov_12.227428_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=38.2 corr=0 origname=NODE_3_length_227891_cov_38.171848_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00045 len=30445 cov=18.4 corr=0 origname=NODE_45_length_30445_cov_18.368518_pilon sw=shovill-spades/1.1.0 date=20231107	4572..6329	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217341 cov=32.6 corr=0 origname=NODE_4_length_217341_cov_32.631687_pilon sw=shovill-spades/1.1.0 date=20231107	122488..122976	Type 1 fimbriae		gad	99.79	1401 / 1401	contig00001 len=282841 cov=35.2 corr=0 origname=NODE_1_length_282841_cov_35.187187_pilon sw=shovill-spades/1.1.0 date=20231107	63646..65046	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21369 cov=38.9 corr=0 origname=NODE_50_length_21369_cov_38.924993_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00038 len=43525 cov=25.1 corr=0 origname=NODE_38_length_43525_cov_25.128931_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00056 len=14487 cov=56.1 corr=0 origname=NODE_56_length_14487_cov_56.065088_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00084 len=4264 cov=46.9 corr=0 origname=NODE_84_length_4264_cov_46.932423_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4264	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=41.7 corr=0 origname=NODE_25_length_78936_cov_41.740377_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=41.7 corr=0 origname=NODE_25_length_78936_cov_41.740377_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	99.95	2211 / 2211	contig00058 len=13382 cov=18.0 corr=0 origname=NODE_58_length_13382_cov_18.006245_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00078 len=5108 cov=49.7 corr=0 origname=NODE_78_length_5108_cov_49.662747_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244637 cov=29.5 corr=0 origname=NODE_2_length_244637_cov_29.450283_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=30.7 corr=0 origname=NODE_54_length_15109_cov_30.679451_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244637 cov=29.5 corr=0 origname=NODE_2_length_244637_cov_29.450283_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124411 cov=32.8 corr=0 origname=NODE_16_length_124411_cov_32.772748_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21369 cov=38.9 corr=0 origname=NODE_50_length_21369_cov_38.924993_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00108 len=2397 cov=43.6 corr=0 origname=NODE_108_length_2397_cov_43.642238_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00087 len=3959 cov=45.2 corr=0 origname=NODE_87_length_3959_cov_45.183040_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00038 len=43525 cov=25.1 corr=0 origname=NODE_38_length_43525_cov_25.128931_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183604 cov=34.0 corr=0 origname=NODE_7_length_183604_cov_33.965103_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59957 cov=36.7 corr=0 origname=NODE_29_length_59957_cov_36.691561_pilon sw=shovill-spades/1.1.0 date=20231107	4986..5949	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=146726 cov=33.3 corr=0 origname=NODE_11_length_146726_cov_33.295557_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.87	8257 / 9510	contig00051 len=20778 cov=13.6 corr=0 origname=NODE_51_length_20778_cov_13.622613_pilon sw=shovill-spades/1.1.0 date=20231107	1..8255	Toxin B	AB011549	traT	100	423 / 423	contig00101 len=2682 cov=26.9 corr=0 origname=NODE_101_length_2682_cov_26.947511_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00038 len=43525 cov=25.1 corr=0 origname=NODE_38_length_43525_cov_25.128931_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00097 len=2769 cov=77.4 corr=0 origname=NODE_97_length_2769_cov_77.406273_pilon sw=shovill-spades/1.1.0 date=20231107	329..459	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=30445 cov=18.4 corr=0 origname=NODE_45_length_30445_cov_18.368518_pilon sw=shovill-spades/1.1.0 date=20231107	26613..27294	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00058 len=13382 cov=18.0 corr=0 origname=NODE_58_length_13382_cov_18.006245_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128639	Escherichia_coli	818104716	714	0.5023	126.775 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_186.92_Circ,,Contig_2_27.7001_Circ,	158	5482628	5169430	5650664	159.937	106.058	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=64.4 corr=0 origname=NODE_76_length_5109_cov_64.386409_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=57.7 corr=0 origname=NODE_1_length_314496_cov_57.717272_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146585 cov=52.1 corr=0 origname=NODE_12_length_146585_cov_52.050541_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00045 len=31680 cov=32.6 corr=0 origname=NODE_45_length_31680_cov_32.618285_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146585 cov=52.1 corr=0 origname=NODE_12_length_146585_cov_52.050541_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146585 cov=52.1 corr=0 origname=NODE_12_length_146585_cov_52.050541_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=65383 cov=48.3 corr=0 origname=NODE_28_length_65383_cov_48.341926_pilon sw=shovill-spades/1.1.0 date=20231107	64004..64657	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=29.5 corr=0 origname=NODE_63_length_11488_cov_29.512942_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=55.2 corr=0 origname=NODE_3_length_227891_cov_55.208033_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00045 len=31680 cov=32.6 corr=0 origname=NODE_45_length_31680_cov_32.618285_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=216976 cov=48.9 corr=0 origname=NODE_4_length_216976_cov_48.873062_pilon sw=shovill-spades/1.1.0 date=20231107	94467..94955	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=57.7 corr=0 origname=NODE_1_length_314496_cov_57.717272_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00053 len=21369 cov=61.8 corr=0 origname=NODE_53_length_21369_cov_61.773381_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=42.7 corr=0 origname=NODE_33_length_51407_cov_42.715644_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00044 len=33152 cov=64.4 corr=0 origname=NODE_44_length_33152_cov_64.407822_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00059 len=13387 cov=77.4 corr=0 origname=NODE_59_length_13387_cov_77.373646_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=62.3 corr=0 origname=NODE_23_length_78936_cov_62.329076_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=62.3 corr=0 origname=NODE_23_length_78936_cov_62.329076_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00060 len=13382 cov=34.0 corr=0 origname=NODE_60_length_13382_cov_33.954706_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=64.4 corr=0 origname=NODE_76_length_5109_cov_64.386409_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=45.3 corr=0 origname=NODE_2_length_244736_cov_45.349511_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00057 len=15109 cov=50.4 corr=0 origname=NODE_57_length_15109_cov_50.380943_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=45.3 corr=0 origname=NODE_2_length_244736_cov_45.349511_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=48.3 corr=0 origname=NODE_16_length_124410_cov_48.311980_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00053 len=21369 cov=61.8 corr=0 origname=NODE_53_length_21369_cov_61.773381_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00101 len=2397 cov=69.7 corr=0 origname=NODE_101_length_2397_cov_69.705551_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00084 len=3959 cov=71.5 corr=0 origname=NODE_84_length_3959_cov_71.508273_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=42.7 corr=0 origname=NODE_33_length_51407_cov_42.715644_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183691 cov=49.4 corr=0 origname=NODE_8_length_183691_cov_49.351585_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59952 cov=58.2 corr=0 origname=NODE_29_length_59952_cov_58.200047_pilon sw=shovill-spades/1.1.0 date=20231107	4981..5944	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146585 cov=52.1 corr=0 origname=NODE_12_length_146585_cov_52.050541_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00052 len=22666 cov=24.3 corr=0 origname=NODE_52_length_22666_cov_24.250365_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00118 len=1756 cov=47.5 corr=0 origname=NODE_118_length_1756_cov_47.524925_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=42.7 corr=0 origname=NODE_33_length_51407_cov_42.715644_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=87.7 corr=0 origname=NODE_94_length_2769_cov_87.748693_pilon sw=shovill-spades/1.1.0 date=20231107	1673..1803	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=31680 cov=32.6 corr=0 origname=NODE_45_length_31680_cov_32.618285_pilon sw=shovill-spades/1.1.0 date=20231107	26612..27293	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00060 len=13382 cov=34.0 corr=0 origname=NODE_60_length_13382_cov_33.954706_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128640	Escherichia_coli	572176748	1606	0.4546	47.693 KB	49	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	25	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,traT,traT	1	tet(J)	0		4	Col(pHAD28),Col3M,Col3M,IncFIB(AP001918),IncFII	4	Contig_1_81.4694_Circ,,Contig_2_31.2244_Circ,,Contig_3_77.9677_Circ,,Contig_4_107.398_Circ,	96	9397738	5958018	3949840	96.976	157.732	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00284 len=5109 cov=30.1 corr=0 origname=NODE_284_length_5109_cov_30.101435_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314901 cov=33.3 corr=0 origname=NODE_1_length_314901_cov_33.347317_pilon sw=shovill-spades/1.1.0 date=20231107	198820..200802	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00179 len=11564 cov=21.8 corr=0 origname=NODE_179_length_11564_cov_21.790552_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	99.97	2997 / 2997	contig00073 len=31679 cov=13.4 corr=0 origname=NODE_73_length_31679_cov_13.361466_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00179 len=11564 cov=21.8 corr=0 origname=NODE_179_length_11564_cov_21.790552_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00179 len=11564 cov=21.8 corr=0 origname=NODE_179_length_11564_cov_21.790552_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=63408 cov=27.4 corr=1 origname=NODE_31_length_63408_cov_27.418182_pilon sw=shovill-spades/1.1.0 date=20231107	62046..62699	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00181 len=11488 cov=12.0 corr=0 origname=NODE_181_length_11488_cov_12.024392_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=226710 cov=31.8 corr=0 origname=NODE_3_length_226710_cov_31.827711_pilon sw=shovill-spades/1.1.0 date=20231107	145807..146376			etpD	100	1758 / 1758	contig00073 len=31679 cov=13.4 corr=0 origname=NODE_73_length_31679_cov_13.361466_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00010 len=133996 cov=24.8 corr=0 origname=NODE_10_length_133996_cov_24.759524_pilon sw=shovill-spades/1.1.0 date=20231107	65297..65785	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314901 cov=33.3 corr=0 origname=NODE_1_length_314901_cov_33.347317_pilon sw=shovill-spades/1.1.0 date=20231107	217672..219072	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00017 len=109907 cov=21.5 corr=0 origname=NODE_17_length_109907_cov_21.541469_pilon sw=shovill-spades/1.1.0 date=20231107	40297..41697	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00114 len=21472 cov=25.6 corr=0 origname=NODE_114_length_21472_cov_25.625930_pilon sw=shovill-spades/1.1.0 date=20231107	10060..10977	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00043 len=51407 cov=23.0 corr=0 origname=NODE_43_length_51407_cov_22.998850_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00186 len=11088 cov=44.1 corr=0 origname=NODE_186_length_11088_cov_44.080931_pilon sw=shovill-spades/1.1.0 date=20231107	7668..7961	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00241 len=7178 cov=35.7 corr=0 origname=NODE_241_length_7178_cov_35.650063_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00500 len=1162 cov=35.1 corr=0 origname=NODE_500_length_1162_cov_35.121382_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00500 len=1162 cov=35.1 corr=0 origname=NODE_500_length_1162_cov_35.121382_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00330 len=3655 cov=10.3 corr=0 origname=NODE_330_length_3655_cov_10.299102_pilon sw=shovill-spades/1.1.0 date=20231107	866..3076	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00284 len=5109 cov=30.1 corr=0 origname=NODE_284_length_5109_cov_30.101435_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00015 len=116688 cov=29.5 corr=0 origname=NODE_15_length_116688_cov_29.511703_pilon sw=shovill-spades/1.1.0 date=20231107	109202..110182	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00145 len=15109 cov=26.0 corr=0 origname=NODE_145_length_15109_cov_25.981955_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00015 len=116688 cov=29.5 corr=0 origname=NODE_15_length_116688_cov_29.511703_pilon sw=shovill-spades/1.1.0 date=20231107	108149..109141	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00012 len=124904 cov=30.5 corr=0 origname=NODE_12_length_124904_cov_30.510924_pilon sw=shovill-spades/1.1.0 date=20231107	107909..108793	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00114 len=21472 cov=25.6 corr=0 origname=NODE_114_length_21472_cov_25.625930_pilon sw=shovill-spades/1.1.0 date=20231107	18495..19448	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00394 len=2397 cov=35.5 corr=0 origname=NODE_394_length_2397_cov_35.473114_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00319 len=3959 cov=36.2 corr=0 origname=NODE_319_length_3959_cov_36.168304_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00043 len=51407 cov=23.0 corr=0 origname=NODE_43_length_51407_cov_22.998850_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00047 len=49092 cov=26.9 corr=0 origname=NODE_47_length_49092_cov_26.947164_pilon sw=shovill-spades/1.1.0 date=20231107	22824..23537	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00033 len=62356 cov=30.9 corr=0 origname=NODE_33_length_62356_cov_30.868610_pilon sw=shovill-spades/1.1.0 date=20231107	7385..8348	Tellurium ion resistance protein	MG591698	traT	100	423 / 423	contig00445 len=1756 cov=19.8 corr=0 origname=NODE_445_length_1756_cov_19.792192_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00043 len=51407 cov=23.0 corr=0 origname=NODE_43_length_51407_cov_22.998850_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																		tet(J)	99.08	1197/1197	contig00148 len=14642 cov=9.9 corr=0 origname=NODE_148_length_14642_cov_9.890729_pilon sw=shovill-spades/1.1.0 date=20231107	13243..14439	Doxycycline, Tetracycline	ACLE01000065																																																enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00370 len=2769 cov=49.3 corr=0 origname=NODE_370_length_2769_cov_49.302091_pilon sw=shovill-spades/1.1.0 date=20231107	2555..2685	KU674895	enterobacteriales	Col3M	97.45	157 / 157	contig00340 len=3478 cov=31.2 corr=0 origname=NODE_340_length_3478_cov_31.217597_pilon sw=shovill-spades/1.1.0 date=20231107	37..193	JX514065	enterobacteriales	Col3M	97.45	157 / 157	contig00340 len=3478 cov=31.2 corr=0 origname=NODE_340_length_3478_cov_31.217597_pilon sw=shovill-spades/1.1.0 date=20231107	1677..1833	JX514065	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00073 len=31679 cov=13.4 corr=0 origname=NODE_73_length_31679_cov_13.361466_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00198 len=10235 cov=20.2 corr=0 origname=NODE_198_length_10235_cov_20.201696_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016							
SAM128641	Escherichia_coli	423745894	715	0.5025	119.925 KB	17	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_75.978_Circ,	96	5468323	4399356	2932762	97.522	124.298	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00085 len=5109 cov=35.2 corr=0 origname=NODE_85_length_5109_cov_35.156835_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=217817 cov=30.2 corr=0 origname=NODE_2_length_217817_cov_30.249502_pilon sw=shovill-spades/1.1.0 date=20231107	198820..200802	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=25.0 corr=0 origname=NODE_11_length_145661_cov_24.992100_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2992 / 2997	contig00050 len=20583 cov=35.4 corr=0 origname=NODE_50_length_20583_cov_35.408696_pilon sw=shovill-spades/1.1.0 date=20231107	17505..20496	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=25.0 corr=0 origname=NODE_11_length_145661_cov_24.992100_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=25.0 corr=0 origname=NODE_11_length_145661_cov_24.992100_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00042 len=33840 cov=23.3 corr=0 origname=NODE_42_length_33840_cov_23.345818_pilon sw=shovill-spades/1.1.0 date=20231107	32478..33131	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=17.5 corr=0 origname=NODE_61_length_11488_cov_17.485391_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=227891 cov=30.1 corr=0 origname=NODE_1_length_227891_cov_30.102814_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00050 len=20583 cov=35.4 corr=0 origname=NODE_50_length_20583_cov_35.408696_pilon sw=shovill-spades/1.1.0 date=20231107	4568..6325	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00013 len=135335 cov=24.6 corr=0 origname=NODE_13_length_135335_cov_24.558760_pilon sw=shovill-spades/1.1.0 date=20231107	94467..94955	Type 1 fimbriae		gad	99.79	1401 / 1401	contig00033 len=53284 cov=17.4 corr=0 origname=NODE_33_length_53284_cov_17.406256_pilon sw=shovill-spades/1.1.0 date=20231107	11639..13039	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21472 cov=27.2 corr=0 origname=NODE_49_length_21472_cov_27.234928_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00038 len=43526 cov=17.6 corr=1 origname=NODE_38_length_43526_cov_17.587499_pilon sw=shovill-spades/1.1.0 date=20231107	10161..12251	Adherence protein	AE005174	iss	98.3	294 / 294	contig00055 len=15304 cov=53.7 corr=0 origname=NODE_55_length_15304_cov_53.657990_pilon sw=shovill-spades/1.1.0 date=20231107	11910..12203	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00080 len=7178 cov=32.2 corr=0 origname=NODE_80_length_7178_cov_32.239311_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00028 len=78936 cov=31.8 corr=0 origname=NODE_28_length_78936_cov_31.845355_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00028 len=78936 cov=31.8 corr=0 origname=NODE_28_length_78936_cov_31.845355_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00058 len=13382 cov=28.9 corr=0 origname=NODE_58_length_13382_cov_28.948160_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00085 len=5109 cov=35.2 corr=0 origname=NODE_85_length_5109_cov_35.156835_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00018 len=116322 cov=27.2 corr=0 origname=NODE_18_length_116322_cov_27.160095_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=22.3 corr=0 origname=NODE_56_length_15109_cov_22.304634_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00018 len=116322 cov=27.2 corr=0 origname=NODE_18_length_116322_cov_27.160095_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=26.7 corr=0 origname=NODE_15_length_124410_cov_26.726719_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21472 cov=27.2 corr=0 origname=NODE_49_length_21472_cov_27.234928_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00100 len=3617 cov=35.5 corr=0 origname=NODE_100_length_3617_cov_35.493477_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00091 len=4530 cov=40.9 corr=0 origname=NODE_91_length_4530_cov_40.927011_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00038 len=43526 cov=17.6 corr=1 origname=NODE_38_length_43526_cov_17.587499_pilon sw=shovill-spades/1.1.0 date=20231107	14846..15886	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00035 len=48321 cov=25.2 corr=0 origname=NODE_35_length_48321_cov_25.164752_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00008 len=160523 cov=28.8 corr=0 origname=NODE_8_length_160523_cov_28.778199_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=25.0 corr=0 origname=NODE_11_length_145661_cov_24.992100_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00064 len=10445 cov=9.2 corr=1 origname=NODE_64_length_10445_cov_9.164389_pilon sw=shovill-spades/1.1.0 date=20231107	84..9593	Toxin B	AB011549	traT	100	423 / 423	contig00131 len=1756 cov=17.6 corr=0 origname=NODE_131_length_1756_cov_17.607808_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00038 len=43526 cov=17.6 corr=1 origname=NODE_38_length_43526_cov_17.587499_pilon sw=shovill-spades/1.1.0 date=20231107	34453..34581	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00108 len=2769 cov=35.4 corr=0 origname=NODE_108_length_2769_cov_35.415235_pilon sw=shovill-spades/1.1.0 date=20231107	2165..2295	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00062 len=11194 cov=18.5 corr=0 origname=NODE_62_length_11194_cov_18.492570_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00058 len=13382 cov=28.9 corr=0 origname=NODE_58_length_13382_cov_28.948160_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128642	Escherichia_coli	591752590	2562	0.5034	19.59 KB	86	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	32	astA,chuA,eae-g01-gamma,ehxA,eltIIAB-a,espA,espB,espJ,espP,espY2:000868321,estap-STa4,etpD,faeD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,kpsMII,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT,traT,yehA	3	aph(3'')-Ib,sul2,tet(A)	1	parE_p.I355T	6	Col(pHAD28),IncFIB(AP001918),IncFII,IncFII(pSE11),IncQ1,IncX4	1	Contig_1_159.904_Circ,	117	6725143	5019820	4084708	119.039	133.971	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	99.92	1185 / 1185	astA	100	97 / 117	contig00239 len=5109 cov=44.9 corr=0 origname=NODE_239_length_5109_cov_44.854723_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00090 len=18589 cov=25.5 corr=0 origname=NODE_90_length_18589_cov_25.527571_pilon sw=shovill-spades/1.1.0 date=20231107	16597..18579	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00029 len=41679 cov=29.9 corr=0 origname=NODE_29_length_41679_cov_29.856978_pilon sw=shovill-spades/1.1.0 date=20231107	31038..33842		44	ehxA	100	2997 / 2997	contig00049 len=31679 cov=54.5 corr=0 origname=NODE_49_length_31679_cov_54.534348_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	eltIIAB-a	98.6	1141 / 1141	contig00482 len=1781 cov=2.4 corr=0 origname=NODE_486_length_1781_cov_2.437870_pilon sw=shovill-spades/1.1.0 date=20231107	93..1233	Heat-labile enterotoxin LTII-a	JQ031711	espA	100	579 / 579	contig00029 len=41679 cov=29.9 corr=0 origname=NODE_29_length_41679_cov_29.856978_pilon sw=shovill-spades/1.1.0 date=20231107	36583..37161	Type III secretions system	AE005174	espB	100	939 / 939	contig00029 len=41679 cov=29.9 corr=0 origname=NODE_29_length_41679_cov_29.856978_pilon sw=shovill-spades/1.1.0 date=20231107	38319..39257	Secreted protein B	AE005174	espJ	100	654 / 654	contig00043 len=34423 cov=30.5 corr=0 origname=NODE_43_length_34423_cov_30.491466_pilon sw=shovill-spades/1.1.0 date=20231107	33097..33750	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00139 len=12419 cov=48.8 corr=0 origname=NODE_139_length_12419_cov_48.811648_pilon sw=shovill-spades/1.1.0 date=20231107	1161..5063	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00142 len=12170 cov=38.3 corr=0 origname=NODE_142_length_12170_cov_38.330822_pilon sw=shovill-spades/1.1.0 date=20231107	9081..9650			estap-STa4	100	219 / 219	contig00446 len=2031 cov=7.4 corr=0 origname=NODE_448_length_2031_cov_7.389175_pilon sw=shovill-spades/1.1.0 date=20231107	1055..1273	Heat-stable enterotoxin STa4 porcine variant	KT992796	etpD	100	1758 / 1758	contig00049 len=31679 cov=54.5 corr=0 origname=NODE_49_length_31679_cov_54.534348_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	faeD	96.16	2445 / 2445	contig00103 len=15936 cov=11.8 corr=0 origname=NODE_103_length_15936_cov_11.812180_pilon sw=shovill-spades/1.1.0 date=20231107	10186..12630	F4 (K88) Usher	CP057646	fimH	100	489 / 489	contig00019 len=49147 cov=28.1 corr=0 origname=NODE_19_length_49147_cov_28.128771_pilon sw=shovill-spades/1.1.0 date=20231107	1940..2428	Type 1 fimbriae		gad	100	1270 / 1401	contig00007 len=66485 cov=23.9 corr=0 origname=NODE_7_length_66485_cov_23.924255_pilon sw=shovill-spades/1.1.0 date=20231107	65216..66485	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00080 len=21369 cov=42.3 corr=0 origname=NODE_80_length_21369_cov_42.283673_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00024 len=43539 cov=27.4 corr=0 origname=NODE_24_length_43539_cov_27.423219_pilon sw=shovill-spades/1.1.0 date=20231107	10160..12250	Adherence protein	AE005174	iss	98.3	294 / 294	contig00046 len=33152 cov=45.8 corr=0 origname=NODE_46_length_33152_cov_45.816309_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00138 len=12527 cov=53.2 corr=0 origname=NODE_138_length_12527_cov_53.157848_pilon sw=shovill-spades/1.1.0 date=20231107	10207..10500	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00041 len=35885 cov=34.4 corr=0 origname=NODE_41_length_35885_cov_34.379812_pilon sw=shovill-spades/1.1.0 date=20231107	34846..35139	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00041 len=35885 cov=34.4 corr=0 origname=NODE_41_length_35885_cov_34.379812_pilon sw=shovill-spades/1.1.0 date=20231107	34846..35139	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00254 len=4697 cov=41.4 corr=0 origname=NODE_254_length_4697_cov_41.386452_pilon sw=shovill-spades/1.1.0 date=20231107	2052..4262	Plasmid-encoded catalase peroxidase	AB011549	kpsMII	98.51	740 / 777	contig00705 len=989 cov=2.6 corr=0 origname=NODE_731_length_989_cov_2.641425_pilon sw=shovill-spades/1.1.0 date=20231107	2..741	Polysialic acid transport protein; Group 2 capsule	QMGM01000001	nleA	99.92	1326 / 1326	contig00239 len=5109 cov=44.9 corr=0 origname=NODE_239_length_5109_cov_44.854723_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00022 len=46251 cov=36.8 corr=0 origname=NODE_22_length_46251_cov_36.760312_pilon sw=shovill-spades/1.1.0 date=20231107	6663..7643	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00106 len=15278 cov=35.2 corr=0 origname=NODE_106_length_15278_cov_35.207085_pilon sw=shovill-spades/1.1.0 date=20231107	9468..10457	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00022 len=46251 cov=36.8 corr=0 origname=NODE_22_length_46251_cov_36.760312_pilon sw=shovill-spades/1.1.0 date=20231107	7704..8696	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00126 len=13491 cov=28.3 corr=0 origname=NODE_126_length_13491_cov_28.296940_pilon sw=shovill-spades/1.1.0 date=20231107	11028..11912	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00080 len=21369 cov=42.3 corr=0 origname=NODE_80_length_21369_cov_42.283673_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00317 len=3446 cov=55.2 corr=0 origname=NODE_317_length_3446_cov_55.174963_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00295 len=3959 cov=50.9 corr=0 origname=NODE_295_length_3959_cov_50.855998_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00024 len=43539 cov=27.4 corr=0 origname=NODE_24_length_43539_cov_27.423219_pilon sw=shovill-spades/1.1.0 date=20231107	14845..15885	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=66347 cov=26.2 corr=0 origname=NODE_8_length_66347_cov_26.236914_pilon sw=shovill-spades/1.1.0 date=20231107	61068..61781	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00035 len=38907 cov=35.4 corr=0 origname=NODE_35_length_38907_cov_35.365906_pilon sw=shovill-spades/1.1.0 date=20231107	3526..4489	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00029 len=41679 cov=29.9 corr=0 origname=NODE_29_length_41679_cov_29.856978_pilon sw=shovill-spades/1.1.0 date=20231107	28676..30370	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00099 len=17518 cov=32.0 corr=0 origname=NODE_99_length_17518_cov_32.000689_pilon sw=shovill-spades/1.1.0 date=20231107	7376..16885	Toxin B	AB011549	traT	100	423 / 423	contig00487 len=1756 cov=24.2 corr=0 origname=NODE_492_length_1756_cov_24.152553_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00024 len=43539 cov=27.4 corr=0 origname=NODE_24_length_43539_cov_27.423219_pilon sw=shovill-spades/1.1.0 date=20231107	34452..34580	Outer membrane protein complement resistance	AMTE01000156	traT	96.19	735 / 735	contig00084 len=20211 cov=6.9 corr=3 origname=NODE_84_length_20211_cov_6.873509_pilon sw=shovill-spades/1.1.0 date=20231107	3545..4279	Outer membrane protein complement resistance	NZ_UIMJ01000043	yehA	97.29	1035 / 1035	contig00533 len=1498 cov=5.8 corr=0 origname=NODE_541_length_1498_cov_5.759773_pilon sw=shovill-spades/1.1.0 date=20231107	305..1339	Outer membrane lipoprotein, YHD fimbriael cluster	CP042934	aph(3'')-Ib	100	695/804	contig00164 len=9498 cov=10.5 corr=0 origname=NODE_164_length_9498_cov_10.466780_pilon sw=shovill-spades/1.1.0 date=20231107	3698..4392	Streptomycin	AF321551	sul2	100	816/816	contig00164 len=9498 cov=10.5 corr=0 origname=NODE_164_length_9498_cov_10.466780_pilon sw=shovill-spades/1.1.0 date=20231107	2822..3637	Sulfamethoxazole	FN995456	tet(A)	99.92	1200/1200	contig00164 len=9498 cov=10.5 corr=0 origname=NODE_164_length_9498_cov_10.466780_pilon sw=shovill-spades/1.1.0 date=20231107	5293..6492	Doxycycline, Tetracycline	AJ517790																													parE p.I355T	ATC -> ACC	I -> T	Nalidixic Acid, Ciprofloxacin	28598203	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00369 len=2769 cov=74.6 corr=0 origname=NODE_369_length_2769_cov_74.605302_pilon sw=shovill-spades/1.1.0 date=20231107	2312..2442	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00049 len=31679 cov=54.5 corr=0 origname=NODE_49_length_31679_cov_54.534348_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00247 len=4936 cov=64.7 corr=0 origname=NODE_247_length_4936_cov_64.686481_pilon sw=shovill-spades/1.1.0 date=20231107	2370..2628	AY458016	enterobacteriales	IncFII(pSE11)	92.42	264 / 264	contig00339 len=3131 cov=6.1 corr=1 origname=NODE_339_length_3131_cov_6.074342_pilon sw=shovill-spades/1.1.0 date=20231107	2836..3094	AP009242	enterobacteriales	IncQ1	100	796 / 796	contig00164 len=9498 cov=10.5 corr=0 origname=NODE_164_length_9498_cov_10.466780_pilon sw=shovill-spades/1.1.0 date=20231107	687..1482	M28829	enterobacteriales	IncX4	95.51	713 / 712	contig00036 len=37801 cov=12.4 corr=1 origname=NODE_36_length_37801_cov_12.444710_pilon sw=shovill-spades/1.1.0 date=20231107	36930..37641	FN543504
SAM128643	Escherichia_coli	557075948	788	0.5024	126.774 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_105.196_Circ,	115	5482775	4826964	3851896	116.753	113.586	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00078 len=5108 cov=52.0 corr=0 origname=NODE_78_length_5108_cov_51.999203_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00004 len=217817 cov=38.6 corr=0 origname=NODE_4_length_217817_cov_38.641788_pilon sw=shovill-spades/1.1.0 date=20231107	198820..200802	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146726 cov=35.5 corr=0 origname=NODE_12_length_146726_cov_35.465319_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	99.93	2997 / 2997	contig00047 len=23157 cov=19.3 corr=0 origname=NODE_47_length_23157_cov_19.278202_pilon sw=shovill-spades/1.1.0 date=20231107	2988..5984	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146726 cov=35.5 corr=0 origname=NODE_12_length_146726_cov_35.465319_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146726 cov=35.5 corr=0 origname=NODE_12_length_146726_cov_35.465319_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=56948 cov=29.9 corr=0 origname=NODE_30_length_56948_cov_29.946462_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00058 len=11488 cov=9.9 corr=0 origname=NODE_58_length_11488_cov_9.862508_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=445228 cov=36.4 corr=0 origname=NODE_1_length_445228_cov_36.377486_pilon sw=shovill-spades/1.1.0 date=20231107	297797..298366			etpD	100	1758 / 1758	contig00047 len=23157 cov=19.3 corr=0 origname=NODE_47_length_23157_cov_19.278202_pilon sw=shovill-spades/1.1.0 date=20231107	17164..18921	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=445228 cov=36.4 corr=0 origname=NODE_1_length_445228_cov_36.377486_pilon sw=shovill-spades/1.1.0 date=20231107	122575..123063	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=248347 cov=33.8 corr=0 origname=NODE_2_length_248347_cov_33.767530_pilon sw=shovill-spades/1.1.0 date=20231107	63646..65046	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00048 len=21369 cov=39.2 corr=0 origname=NODE_48_length_21369_cov_39.204812_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00037 len=43525 cov=26.7 corr=0 origname=NODE_37_length_43525_cov_26.727610_pilon sw=shovill-spades/1.1.0 date=20231107	10160..12250	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33255 cov=42.5 corr=0 origname=NODE_41_length_33255_cov_42.539893_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00051 len=15156 cov=72.0 corr=0 origname=NODE_51_length_15156_cov_72.033920_pilon sw=shovill-spades/1.1.0 date=20231107	11736..12029	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=44.0 corr=0 origname=NODE_23_length_78936_cov_43.962039_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=44.0 corr=0 origname=NODE_23_length_78936_cov_43.962039_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00089 len=3658 cov=8.8 corr=0 origname=NODE_89_length_3658_cov_8.768713_pilon sw=shovill-spades/1.1.0 date=20231107	869..3079	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00078 len=5108 cov=52.0 corr=0 origname=NODE_78_length_5108_cov_51.999203_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=31.3 corr=0 origname=NODE_3_length_244736_cov_31.264273_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15109 cov=35.4 corr=0 origname=NODE_52_length_15109_cov_35.420828_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=31.3 corr=0 origname=NODE_3_length_244736_cov_31.264273_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124411 cov=32.9 corr=0 origname=NODE_16_length_124411_cov_32.913795_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00048 len=21369 cov=39.2 corr=0 origname=NODE_48_length_21369_cov_39.204812_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00082 len=4289 cov=59.8 corr=0 origname=NODE_82_length_4289_cov_59.786327_pilon sw=shovill-spades/1.1.0 date=20231107	1604..2830	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00086 len=3959 cov=51.0 corr=0 origname=NODE_86_length_3959_cov_51.049380_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00037 len=43525 cov=26.7 corr=0 origname=NODE_37_length_43525_cov_26.727610_pilon sw=shovill-spades/1.1.0 date=20231107	14845..15885	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183911 cov=34.5 corr=0 origname=NODE_7_length_183911_cov_34.540164_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160492 cov=38.1 corr=0 origname=NODE_10_length_160492_cov_38.149164_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146726 cov=35.5 corr=0 origname=NODE_12_length_146726_cov_35.465319_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	toxB	99.92	7925 / 9510	contig00066 len=8868 cov=6.6 corr=0 origname=NODE_66_length_8868_cov_6.582090_pilon sw=shovill-spades/1.1.0 date=20231107	1..7925	Toxin B	AB011549	traT	100	423 / 423	contig00120 len=1756 cov=26.7 corr=0 origname=NODE_120_length_1756_cov_26.744745_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00037 len=43525 cov=26.7 corr=0 origname=NODE_37_length_43525_cov_26.727610_pilon sw=shovill-spades/1.1.0 date=20231107	34452..34580	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00096 len=2769 cov=48.9 corr=0 origname=NODE_96_length_2769_cov_48.917849_pilon sw=shovill-spades/1.1.0 date=20231107	2182..2312	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00067 len=8246 cov=10.8 corr=0 origname=NODE_67_length_8246_cov_10.775107_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=9309 cov=17.8 corr=1 origname=NODE_62_length_9309_cov_17.830549_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128644	Escherichia_coli	650302510	745	0.5025	128.047 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_108.366_Circ,,Contig_3_15.527_Circ,	130	5485091	4998771	4497636	131.678	109.728	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00079 len=5108 cov=55.5 corr=0 origname=NODE_79_length_5108_cov_55.507475_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=49.1 corr=0 origname=NODE_1_length_314496_cov_49.059878_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145661 cov=44.4 corr=0 origname=NODE_12_length_145661_cov_44.393350_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00043 len=31679 cov=32.5 corr=0 origname=NODE_43_length_31679_cov_32.526402_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145661 cov=44.4 corr=0 origname=NODE_12_length_145661_cov_44.393350_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145661 cov=44.4 corr=0 origname=NODE_12_length_145661_cov_44.393350_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=56948 cov=36.6 corr=0 origname=NODE_31_length_56948_cov_36.618235_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=23.4 corr=0 origname=NODE_61_length_11488_cov_23.381153_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=45.8 corr=0 origname=NODE_3_length_227891_cov_45.774249_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00043 len=31679 cov=32.5 corr=0 origname=NODE_43_length_31679_cov_32.526402_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=216875 cov=41.5 corr=0 origname=NODE_4_length_216875_cov_41.530929_pilon sw=shovill-spades/1.1.0 date=20231107	122022..122510	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=49.1 corr=0 origname=NODE_1_length_314496_cov_49.059878_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=52.2 corr=0 origname=NODE_49_length_21369_cov_52.154996_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=33.1 corr=0 origname=NODE_34_length_51407_cov_33.139586_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00055 len=15156 cov=74.9 corr=0 origname=NODE_55_length_15156_cov_74.938799_pilon sw=shovill-spades/1.1.0 date=20231107	11736..12029	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00075 len=7178 cov=55.7 corr=0 origname=NODE_75_length_7178_cov_55.659376_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=49.1 corr=0 origname=NODE_24_length_78936_cov_49.076289_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=49.1 corr=0 origname=NODE_24_length_78936_cov_49.076289_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00059 len=13382 cov=32.4 corr=0 origname=NODE_59_length_13382_cov_32.352043_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00079 len=5108 cov=55.5 corr=0 origname=NODE_79_length_5108_cov_55.507475_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=36.3 corr=0 origname=NODE_2_length_244736_cov_36.302847_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=36.6 corr=0 origname=NODE_56_length_15109_cov_36.576775_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=36.3 corr=0 origname=NODE_2_length_244736_cov_36.302847_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=40.9 corr=0 origname=NODE_16_length_124410_cov_40.903691_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=52.2 corr=0 origname=NODE_49_length_21369_cov_52.154996_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00091 len=3547 cov=60.4 corr=0 origname=NODE_91_length_3547_cov_60.395255_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00087 len=3959 cov=54.6 corr=0 origname=NODE_87_length_3959_cov_54.572647_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=33.1 corr=0 origname=NODE_34_length_51407_cov_33.139586_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183801 cov=40.3 corr=0 origname=NODE_7_length_183801_cov_40.320913_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59936 cov=44.7 corr=0 origname=NODE_29_length_59936_cov_44.693241_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=145661 cov=44.4 corr=0 origname=NODE_12_length_145661_cov_44.393350_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00064 len=10445 cov=12.5 corr=0 origname=NODE_64_length_10445_cov_12.487092_pilon sw=shovill-spades/1.1.0 date=20231107	853..10362	Toxin B	AB011549	traT	100	423 / 423	contig00093 len=3036 cov=27.1 corr=0 origname=NODE_93_length_3036_cov_27.053990_pilon sw=shovill-spades/1.1.0 date=20231107	1571..1993	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=33.1 corr=0 origname=NODE_34_length_51407_cov_33.139586_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=50.1 corr=0 origname=NODE_94_length_2769_cov_50.148245_pilon sw=shovill-spades/1.1.0 date=20231107	1272..1402	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31679 cov=32.5 corr=0 origname=NODE_43_length_31679_cov_32.526402_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00059 len=13382 cov=32.4 corr=0 origname=NODE_59_length_13382_cov_32.352043_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128645	Escherichia_coli	432471754	668	0.5029	121.834 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,toxB,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		94	5510056	4568794	2992068	95.816	120.601	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=6783 cov=27.0 corr=0 origname=NODE_73_length_6783_cov_26.975643_pilon sw=shovill-spades/1.1.0 date=20231107	503..599	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314047 cov=30.7 corr=0 origname=NODE_3_length_314047_cov_30.709017_pilon sw=shovill-spades/1.1.0 date=20231107	198528..200510	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=145662 cov=26.8 corr=0 origname=NODE_10_length_145662_cov_26.751420_pilon sw=shovill-spades/1.1.0 date=20231107	135945..138749		44	ehxA	100	2997 / 2997	contig00042 len=31633 cov=44.6 corr=0 origname=NODE_42_length_31633_cov_44.599867_pilon sw=shovill-spades/1.1.0 date=20231107	17462..20458	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=145662 cov=26.8 corr=0 origname=NODE_10_length_145662_cov_26.751420_pilon sw=shovill-spades/1.1.0 date=20231107	141490..142068	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=145662 cov=26.8 corr=0 origname=NODE_10_length_145662_cov_26.751420_pilon sw=shovill-spades/1.1.0 date=20231107	143226..144164	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=54919 cov=26.3 corr=0 origname=NODE_32_length_54919_cov_26.333206_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00062 len=11475 cov=27.9 corr=0 origname=NODE_62_length_11475_cov_27.897224_pilon sw=shovill-spades/1.1.0 date=20231107	170..4072	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=376980 cov=29.2 corr=0 origname=NODE_2_length_376980_cov_29.210882_pilon sw=shovill-spades/1.1.0 date=20231107	147282..147851			etpD	100	1758 / 1758	contig00042 len=31633 cov=44.6 corr=0 origname=NODE_42_length_31633_cov_44.599867_pilon sw=shovill-spades/1.1.0 date=20231107	4525..6282	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00002 len=376980 cov=29.2 corr=0 origname=NODE_2_length_376980_cov_29.210882_pilon sw=shovill-spades/1.1.0 date=20231107	322594..323082	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314047 cov=30.7 corr=0 origname=NODE_3_length_314047_cov_30.709017_pilon sw=shovill-spades/1.1.0 date=20231107	217380..218780	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00055 len=17291 cov=22.9 corr=0 origname=NODE_55_length_17291_cov_22.933198_pilon sw=shovill-spades/1.1.0 date=20231107	9958..10875	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00047 len=28910 cov=18.8 corr=0 origname=NODE_47_length_28910_cov_18.826052_pilon sw=shovill-spades/1.1.0 date=20231107	11529..13619	Adherence protein	AE005174	iss	97.96	294 / 294	contig00001 len=396622 cov=28.0 corr=1 origname=NODE_1_length_396622_cov_28.023113_pilon sw=shovill-spades/1.1.0 date=20231107	392667..392960	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00183 len=599 cov=27.5 corr=0 origname=NODE_183_length_599_cov_27.537402_pilon sw=shovill-spades/1.1.0 date=20231107	328..599	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=69674 cov=31.1 corr=0 origname=NODE_24_length_69674_cov_31.077073_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=69674 cov=31.1 corr=0 origname=NODE_24_length_69674_cov_31.077073_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00041 len=32969 cov=34.4 corr=0 origname=NODE_41_length_32969_cov_34.433208_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00073 len=6783 cov=27.0 corr=0 origname=NODE_73_length_6783_cov_26.975643_pilon sw=shovill-spades/1.1.0 date=20231107	4392..5717	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00013 len=121834 cov=26.9 corr=0 origname=NODE_13_length_121834_cov_26.908939_pilon sw=shovill-spades/1.1.0 date=20231107	120637..121617	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15107 cov=25.4 corr=0 origname=NODE_58_length_15107_cov_25.364944_pilon sw=shovill-spades/1.1.0 date=20231107	4820..5809	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=121834 cov=26.9 corr=0 origname=NODE_13_length_121834_cov_26.908939_pilon sw=shovill-spades/1.1.0 date=20231107	119584..120576	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00004 len=234437 cov=21.8 corr=0 origname=NODE_4_length_234437_cov_21.750587_pilon sw=shovill-spades/1.1.0 date=20231107	479..1465	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00012 len=124347 cov=27.4 corr=0 origname=NODE_12_length_124347_cov_27.402524_pilon sw=shovill-spades/1.1.0 date=20231107	16126..17010	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00091 len=4269 cov=19.5 corr=0 origname=NODE_91_length_4269_cov_19.454284_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00026 len=67894 cov=23.6 corr=0 origname=NODE_26_length_67894_cov_23.599708_pilon sw=shovill-spades/1.1.0 date=20231107	66166..67392	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00047 len=28910 cov=18.8 corr=0 origname=NODE_47_length_28910_cov_18.826052_pilon sw=shovill-spades/1.1.0 date=20231107	16213..17253	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183583 cov=25.8 corr=0 origname=NODE_6_length_183583_cov_25.763903_pilon sw=shovill-spades/1.1.0 date=20231107	160045..160758	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00028 len=60072 cov=29.0 corr=0 origname=NODE_28_length_60072_cov_28.955102_pilon sw=shovill-spades/1.1.0 date=20231107	54204..55167	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00010 len=145662 cov=26.8 corr=0 origname=NODE_10_length_145662_cov_26.751420_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00010 len=145662 cov=26.8 corr=0 origname=NODE_10_length_145662_cov_26.751420_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AF125993	toxB	99.95	9510 / 9510	contig00041 len=32969 cov=34.4 corr=0 origname=NODE_41_length_32969_cov_34.433208_pilon sw=shovill-spades/1.1.0 date=20231107	14189..23698	Toxin B	AB011549	traT	100	423 / 423	contig00054 len=17923 cov=21.6 corr=0 origname=NODE_54_length_17923_cov_21.645188_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00054 len=17923 cov=21.6 corr=0 origname=NODE_54_length_17923_cov_21.645188_pilon sw=shovill-spades/1.1.0 date=20231107	10517..10645	Outer membrane protein complement resistance	AMTE01000156																																				aph(6)-Id	100	837/837	contig00083 len=5155 cov=24.1 corr=0 origname=NODE_83_length_5155_cov_24.129147_pilon sw=shovill-spades/1.1.0 date=20231107	1100..1936	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00083 len=5155 cov=24.1 corr=0 origname=NODE_83_length_5155_cov_24.129147_pilon sw=shovill-spades/1.1.0 date=20231107	298..1100	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00083 len=5155 cov=24.1 corr=0 origname=NODE_83_length_5155_cov_24.129147_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00083 len=5155 cov=24.1 corr=0 origname=NODE_83_length_5155_cov_24.129147_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00083 len=5155 cov=24.1 corr=0 origname=NODE_83_length_5155_cov_24.129147_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321550	sul2	100	816/816	contig00083 len=5155 cov=24.1 corr=0 origname=NODE_83_length_5155_cov_24.129147_pilon sw=shovill-spades/1.1.0 date=20231107	2709..3524	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00074 len=6731 cov=14.3 corr=0 origname=NODE_74_length_6731_cov_14.295934_pilon sw=shovill-spades/1.1.0 date=20231107	4199..5404	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31633 cov=44.6 corr=0 origname=NODE_42_length_31633_cov_44.599867_pilon sw=shovill-spades/1.1.0 date=20231107	26566..27247	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00041 len=32969 cov=34.4 corr=0 origname=NODE_41_length_32969_cov_34.433208_pilon sw=shovill-spades/1.1.0 date=20231107	7121..7379	AY458016																												
SAM128646	Escherichia_coli	503125766	654	0.5029	145.662 KB	12	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,toxB,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		105	5509962	4756817	3474692	106.832	115.832	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00068 len=6783 cov=27.2 corr=0 origname=NODE_68_length_6783_cov_27.242379_pilon sw=shovill-spades/1.1.0 date=20231107	6185..6281	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314455 cov=35.2 corr=0 origname=NODE_3_length_314455_cov_35.169052_pilon sw=shovill-spades/1.1.0 date=20231107	113538..115520	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145662 cov=28.4 corr=0 origname=NODE_12_length_145662_cov_28.436591_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00039 len=31634 cov=62.4 corr=0 origname=NODE_39_length_31634_cov_62.435342_pilon sw=shovill-spades/1.1.0 date=20231107	17463..20459	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145662 cov=28.4 corr=0 origname=NODE_12_length_145662_cov_28.436591_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145662 cov=28.4 corr=0 origname=NODE_12_length_145662_cov_28.436591_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=54919 cov=27.5 corr=0 origname=NODE_27_length_54919_cov_27.535493_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00058 len=11475 cov=39.8 corr=0 origname=NODE_58_length_11475_cov_39.755710_pilon sw=shovill-spades/1.1.0 date=20231107	7404..11306	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=374880 cov=31.7 corr=0 origname=NODE_2_length_374880_cov_31.657709_pilon sw=shovill-spades/1.1.0 date=20231107	145806..146375			etpD	100	1758 / 1758	contig00039 len=31634 cov=62.4 corr=0 origname=NODE_39_length_31634_cov_62.435342_pilon sw=shovill-spades/1.1.0 date=20231107	4526..6283	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00002 len=374880 cov=31.7 corr=0 origname=NODE_2_length_374880_cov_31.657709_pilon sw=shovill-spades/1.1.0 date=20231107	321118..321606	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314455 cov=35.2 corr=0 origname=NODE_3_length_314455_cov_35.169052_pilon sw=shovill-spades/1.1.0 date=20231107	95268..96668	Glutamate decarboxylase	BA000007	gad	99.79	1401 / 1401	contig00006 len=249584 cov=29.9 corr=0 origname=NODE_6_length_249584_cov_29.943537_pilon sw=shovill-spades/1.1.0 date=20231107	64974..66374	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00053 len=17289 cov=24.6 corr=0 origname=NODE_53_length_17289_cov_24.634085_pilon sw=shovill-spades/1.1.0 date=20231107	6417..7334	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00043 len=28910 cov=20.6 corr=0 origname=NODE_43_length_28910_cov_20.623304_pilon sw=shovill-spades/1.1.0 date=20231107	15292..17382	Adherence protein	AE005174	iss	97.96	294 / 294	contig00001 len=396660 cov=32.6 corr=1 origname=NODE_1_length_396660_cov_32.644834_pilon sw=shovill-spades/1.1.0 date=20231107	3663..3956	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00162 len=599 cov=28.4 corr=0 origname=NODE_162_length_599_cov_28.427165_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00036 len=38162 cov=36.0 corr=0 origname=NODE_36_length_38162_cov_36.037850_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00036 len=38162 cov=36.0 corr=0 origname=NODE_36_length_38162_cov_36.037850_pilon sw=shovill-spades/1.1.0 date=20231107	10956..11249	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00038 len=32969 cov=47.6 corr=0 origname=NODE_38_length_32969_cov_47.642557_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00068 len=6783 cov=27.2 corr=0 origname=NODE_68_length_6783_cov_27.242379_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00014 len=128222 cov=32.6 corr=0 origname=NODE_14_length_128222_cov_32.627124_pilon sw=shovill-spades/1.1.0 date=20231107	120637..121617	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15107 cov=25.6 corr=0 origname=NODE_55_length_15107_cov_25.599361_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00014 len=128222 cov=32.6 corr=0 origname=NODE_14_length_128222_cov_32.627124_pilon sw=shovill-spades/1.1.0 date=20231107	119584..120576	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00010 len=154988 cov=25.4 corr=0 origname=NODE_10_length_154988_cov_25.446516_pilon sw=shovill-spades/1.1.0 date=20231107	479..1465	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00015 len=124332 cov=32.3 corr=0 origname=NODE_15_length_124332_cov_32.254328_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00082 len=4269 cov=20.9 corr=0 origname=NODE_82_length_4269_cov_20.924605_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00024 len=67894 cov=27.6 corr=1 origname=NODE_24_length_67894_cov_27.570889_pilon sw=shovill-spades/1.1.0 date=20231107	66166..67392	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00043 len=28910 cov=20.6 corr=0 origname=NODE_43_length_28910_cov_20.623304_pilon sw=shovill-spades/1.1.0 date=20231107	11658..12698	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00028 len=52208 cov=27.1 corr=0 origname=NODE_28_length_52208_cov_27.145308_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00009 len=160605 cov=34.0 corr=0 origname=NODE_9_length_160605_cov_34.042389_pilon sw=shovill-spades/1.1.0 date=20231107	105521..106484	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00012 len=145662 cov=28.4 corr=0 origname=NODE_12_length_145662_cov_28.436591_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12062	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00012 len=145662 cov=28.4 corr=0 origname=NODE_12_length_145662_cov_28.436591_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12062	Translocated intimin receptor protein	AF125993	toxB	99.94	9510 / 9510	contig00038 len=32969 cov=47.6 corr=0 origname=NODE_38_length_32969_cov_47.642557_pilon sw=shovill-spades/1.1.0 date=20231107	14189..23698	Toxin B	AB011549	traT	100	423 / 423	contig00052 len=18313 cov=23.2 corr=0 origname=NODE_52_length_18313_cov_23.238283_pilon sw=shovill-spades/1.1.0 date=20231107	1410..1832	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00052 len=18313 cov=23.2 corr=0 origname=NODE_52_length_18313_cov_23.238283_pilon sw=shovill-spades/1.1.0 date=20231107	11636..11764	Outer membrane protein complement resistance	AMTE01000156																													aph(6)-Id	100	837/837	contig00078 len=5152 cov=23.6 corr=0 origname=NODE_78_length_5152_cov_23.599684_pilon sw=shovill-spades/1.1.0 date=20231107	3217..4053	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00078 len=5152 cov=23.6 corr=0 origname=NODE_78_length_5152_cov_23.599684_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4855	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00078 len=5152 cov=23.6 corr=0 origname=NODE_78_length_5152_cov_23.599684_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4856	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00078 len=5152 cov=23.6 corr=0 origname=NODE_78_length_5152_cov_23.599684_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4856	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00078 len=5152 cov=23.6 corr=0 origname=NODE_78_length_5152_cov_23.599684_pilon sw=shovill-spades/1.1.0 date=20231107	4053..4856	Streptomycin	AF321550	sul2	100	816/816	contig00078 len=5152 cov=23.6 corr=0 origname=NODE_78_length_5152_cov_23.599684_pilon sw=shovill-spades/1.1.0 date=20231107	1629..2444	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00069 len=6731 cov=10.5 corr=0 origname=NODE_69_length_6731_cov_10.547289_pilon sw=shovill-spades/1.1.0 date=20231107	1328..2533	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00039 len=31634 cov=62.4 corr=0 origname=NODE_39_length_31634_cov_62.435342_pilon sw=shovill-spades/1.1.0 date=20231107	26567..27248	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00038 len=32969 cov=47.6 corr=0 origname=NODE_38_length_32969_cov_47.642557_pilon sw=shovill-spades/1.1.0 date=20231107	7121..7379	AY458016																												
SAM128647	Escherichia_coli	390058240	671	0.5024	116.479 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_88.4414_Circ,	91	5460362	4280089	2697960	92.19	127.575	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00082 len=5108 cov=24.4 corr=0 origname=NODE_82_length_5108_cov_24.437114_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314089 cov=28.2 corr=0 origname=NODE_2_length_314089_cov_28.210269_pilon sw=shovill-spades/1.1.0 date=20231107	113572..115554	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00008 len=145661 cov=25.1 corr=0 origname=NODE_8_length_145661_cov_25.130295_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00047 len=31682 cov=55.4 corr=0 origname=NODE_47_length_31682_cov_55.353297_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00008 len=145661 cov=25.1 corr=0 origname=NODE_8_length_145661_cov_25.130295_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00008 len=145661 cov=25.1 corr=0 origname=NODE_8_length_145661_cov_25.130295_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00045 len=33840 cov=21.4 corr=0 origname=NODE_45_length_33840_cov_21.350499_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00067 len=11488 cov=32.8 corr=0 origname=NODE_67_length_11488_cov_32.849961_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=443619 cov=25.2 corr=2 origname=NODE_1_length_443619_cov_25.159020_pilon sw=shovill-spades/1.1.0 date=20231107	145807..146376			etpD	100	1758 / 1758	contig00047 len=31682 cov=55.4 corr=0 origname=NODE_47_length_31682_cov_55.353297_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=443619 cov=25.2 corr=2 origname=NODE_1_length_443619_cov_25.159020_pilon sw=shovill-spades/1.1.0 date=20231107	321110..321598	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314089 cov=28.2 corr=0 origname=NODE_2_length_314089_cov_28.210269_pilon sw=shovill-spades/1.1.0 date=20231107	95302..96702	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00042 len=41864 cov=17.5 corr=0 origname=NODE_42_length_41864_cov_17.462667_pilon sw=shovill-spades/1.1.0 date=20231107	39782..41182	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00058 len=21369 cov=18.4 corr=0 origname=NODE_58_length_21369_cov_18.372497_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00039 len=43525 cov=17.7 corr=1 origname=NODE_39_length_43525_cov_17.737694_pilon sw=shovill-spades/1.1.0 date=20231107	10160..12250	Adherence protein	AE005174	iss	98.3	294 / 294	contig00057 len=21503 cov=47.1 corr=0 origname=NODE_57_length_21503_cov_47.079488_pilon sw=shovill-spades/1.1.0 date=20231107	3102..3395	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00090 len=4264 cov=23.7 corr=0 origname=NODE_90_length_4264_cov_23.722262_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4264	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00021 len=78937 cov=29.4 corr=0 origname=NODE_21_length_78937_cov_29.366715_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00021 len=78937 cov=29.4 corr=0 origname=NODE_21_length_78937_cov_29.366715_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00064 len=13382 cov=54.0 corr=0 origname=NODE_64_length_13382_cov_54.020766_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00082 len=5108 cov=24.4 corr=0 origname=NODE_82_length_5108_cov_24.437114_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00011 len=128246 cov=24.4 corr=0 origname=NODE_11_length_128246_cov_24.442683_pilon sw=shovill-spades/1.1.0 date=20231107	120661..121641	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00063 len=15109 cov=21.2 corr=0 origname=NODE_63_length_15109_cov_21.179851_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00011 len=128246 cov=24.4 corr=0 origname=NODE_11_length_128246_cov_24.442683_pilon sw=shovill-spades/1.1.0 date=20231107	119608..120600	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00013 len=124192 cov=26.0 corr=0 origname=NODE_13_length_124192_cov_26.035141_pilon sw=shovill-spades/1.1.0 date=20231107	107197..108081	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00058 len=21369 cov=18.4 corr=0 origname=NODE_58_length_21369_cov_18.372497_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00120 len=2397 cov=25.1 corr=0 origname=NODE_120_length_2397_cov_25.058977_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00096 len=3959 cov=32.8 corr=0 origname=NODE_96_length_3959_cov_32.775078_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00039 len=43525 cov=17.7 corr=1 origname=NODE_39_length_43525_cov_17.737694_pilon sw=shovill-spades/1.1.0 date=20231107	14845..15885	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00004 len=185279 cov=24.6 corr=0 origname=NODE_4_length_185279_cov_24.640792_pilon sw=shovill-spades/1.1.0 date=20231107	161631..162344	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00027 len=59954 cov=26.0 corr=0 origname=NODE_27_length_59954_cov_26.001637_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00008 len=145661 cov=25.1 corr=0 origname=NODE_8_length_145661_cov_25.130295_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00059 len=18838 cov=34.2 corr=0 origname=NODE_59_length_18838_cov_34.212674_pilon sw=shovill-spades/1.1.0 date=20231107	8468..17977	Toxin B	AB011549	traT	100	423 / 423	contig00133 len=1756 cov=17.1 corr=0 origname=NODE_133_length_1756_cov_17.072072_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00039 len=43525 cov=17.7 corr=1 origname=NODE_39_length_43525_cov_17.737694_pilon sw=shovill-spades/1.1.0 date=20231107	34452..34580	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00108 len=2774 cov=41.6 corr=0 origname=NODE_108_length_2774_cov_41.647037_pilon sw=shovill-spades/1.1.0 date=20231107	2394..2524	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00047 len=31682 cov=55.4 corr=0 origname=NODE_47_length_31682_cov_55.353297_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=13382 cov=54.0 corr=0 origname=NODE_64_length_13382_cov_54.020766_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128648	Escherichia_coli	301436850	739	0.5028	91.424 KB	19	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_65.1434_Circ,	81	5439471	3701374	2080384	82.202	146.958	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00101 len=5108 cov=22.6 corr=0 origname=NODE_101_length_5108_cov_22.630656_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00035 len=44237 cov=13.9 corr=0 origname=NODE_35_length_44237_cov_13.905994_pilon sw=shovill-spades/1.1.0 date=20231107	25566..27548	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00057 len=23745 cov=12.9 corr=1 origname=NODE_57_length_23745_cov_12.881542_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	100	2997 / 2997	contig00069 len=19975 cov=11.8 corr=0 origname=NODE_69_length_19975_cov_11.790133_pilon sw=shovill-spades/1.1.0 date=20231107	14740..17736	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00057 len=23745 cov=12.9 corr=1 origname=NODE_57_length_23745_cov_12.881542_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00057 len=23745 cov=12.9 corr=1 origname=NODE_57_length_23745_cov_12.881542_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00043 len=33840 cov=18.8 corr=0 origname=NODE_43_length_33840_cov_18.762274_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.9	3903 / 3903	contig00082 len=11488 cov=6.9 corr=0 origname=NODE_82_length_11488_cov_6.878652_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=204658 cov=19.9 corr=0 origname=NODE_2_length_204658_cov_19.915441_pilon sw=shovill-spades/1.1.0 date=20231107	58283..58852			etpD	100	1758 / 1758	contig00069 len=19975 cov=11.8 corr=0 origname=NODE_69_length_19975_cov_11.790133_pilon sw=shovill-spades/1.1.0 date=20231107	1803..3560	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=408670 cov=19.4 corr=1 origname=NODE_1_length_408708_cov_19.420332_pilon sw=shovill-spades/1.1.0 date=20231107	116541..117029	Type 1 fimbriae		gad	99.5	1401 / 1401	contig00035 len=44237 cov=13.9 corr=0 origname=NODE_35_length_44237_cov_13.905994_pilon sw=shovill-spades/1.1.0 date=20231107	7296..8696	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00064 len=21369 cov=19.0 corr=0 origname=NODE_64_length_21369_cov_18.964564_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00037 len=43526 cov=14.0 corr=0 origname=NODE_37_length_43526_cov_13.992264_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00022 len=77384 cov=23.6 corr=0 origname=NODE_22_length_77384_cov_23.606083_pilon sw=shovill-spades/1.1.0 date=20231107	73945..74238	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00063 len=21503 cov=39.3 corr=0 origname=NODE_63_length_21503_cov_39.342985_pilon sw=shovill-spades/1.1.0 date=20231107	3102..3395	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00192 len=1121 cov=20.0 corr=0 origname=NODE_194_length_1121_cov_20.014563_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00192 len=1121 cov=20.0 corr=0 origname=NODE_194_length_1121_cov_20.014563_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00119 len=3730 cov=5.9 corr=1 origname=NODE_119_length_3730_cov_5.912339_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00101 len=5108 cov=22.6 corr=0 origname=NODE_101_length_5108_cov_22.630656_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00013 len=116174 cov=19.4 corr=0 origname=NODE_13_length_116174_cov_19.363705_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00075 len=15109 cov=16.4 corr=0 origname=NODE_75_length_15109_cov_16.435144_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=116174 cov=19.4 corr=0 origname=NODE_13_length_116174_cov_19.363705_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00010 len=124411 cov=17.5 corr=0 origname=NODE_10_length_124411_cov_17.523785_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00064 len=21369 cov=19.0 corr=0 origname=NODE_64_length_21369_cov_18.964564_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00143 len=2397 cov=19.1 corr=0 origname=NODE_143_length_2397_cov_19.070685_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00112 len=4229 cov=25.0 corr=0 origname=NODE_112_length_4229_cov_25.044708_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00037 len=43526 cov=14.0 corr=0 origname=NODE_37_length_43526_cov_13.992264_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00041 len=40406 cov=19.9 corr=0 origname=NODE_41_length_40406_cov_19.929381_pilon sw=shovill-spades/1.1.0 date=20231107	16868..17581	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00026 len=59921 cov=18.8 corr=0 origname=NODE_26_length_59921_cov_18.814926_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00057 len=23745 cov=12.9 corr=1 origname=NODE_57_length_23745_cov_12.881542_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00159 len=1756 cov=13.2 corr=0 origname=NODE_159_length_1756_cov_13.245646_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00037 len=43526 cov=14.0 corr=0 origname=NODE_37_length_43526_cov_13.992264_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00132 len=2769 cov=30.3 corr=0 origname=NODE_132_length_2769_cov_30.320015_pilon sw=shovill-spades/1.1.0 date=20231107	2259..2389	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00093 len=7980 cov=6.0 corr=0 origname=NODE_93_length_7980_cov_5.989986_pilon sw=shovill-spades/1.1.0 date=20231107	2912..3593	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00083 len=10339 cov=12.1 corr=0 origname=NODE_83_length_10339_cov_12.086846_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128649	Escherichia_coli	566623772	771	0.5023	124.41 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_212.035_Circ,	117	5482417	4837848	3910244	118.219	113.323	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=5109 cov=59.8 corr=0 origname=NODE_73_length_5109_cov_59.796732_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314089 cov=37.5 corr=0 origname=NODE_2_length_314089_cov_37.527159_pilon sw=shovill-spades/1.1.0 date=20231107	198536..200518	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=146726 cov=32.8 corr=0 origname=NODE_11_length_146726_cov_32.822621_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	100	2997 / 2997	contig00044 len=31683 cov=87.5 corr=0 origname=NODE_44_length_31683_cov_87.452583_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=146726 cov=32.8 corr=0 origname=NODE_11_length_146726_cov_32.822621_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=146726 cov=32.8 corr=0 origname=NODE_11_length_146726_cov_32.822621_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00026 len=65366 cov=29.7 corr=0 origname=NODE_26_length_65366_cov_29.678529_pilon sw=shovill-spades/1.1.0 date=20231107	64004..64657	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=59.4 corr=0 origname=NODE_60_length_11488_cov_59.352900_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444172 cov=34.8 corr=0 origname=NODE_1_length_444172_cov_34.823661_pilon sw=shovill-spades/1.1.0 date=20231107	145807..146376			etpD	100	1758 / 1758	contig00044 len=31683 cov=87.5 corr=0 origname=NODE_44_length_31683_cov_87.452583_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444172 cov=34.8 corr=0 origname=NODE_1_length_444172_cov_34.823661_pilon sw=shovill-spades/1.1.0 date=20231107	321110..321598	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314089 cov=37.5 corr=0 origname=NODE_2_length_314089_cov_37.527159_pilon sw=shovill-spades/1.1.0 date=20231107	217388..218788	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=44.5 corr=0 origname=NODE_52_length_21369_cov_44.482846_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=25.7 corr=0 origname=NODE_32_length_51407_cov_25.654240_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=46.4 corr=0 origname=NODE_43_length_33152_cov_46.441063_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00055 len=15330 cov=76.0 corr=0 origname=NODE_55_length_15330_cov_76.026445_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78937 cov=41.9 corr=0 origname=NODE_23_length_78937_cov_41.904548_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78937 cov=41.9 corr=0 origname=NODE_23_length_78937_cov_41.904548_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00058 len=13382 cov=81.0 corr=0 origname=NODE_58_length_13382_cov_81.041908_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00073 len=5109 cov=59.8 corr=0 origname=NODE_73_length_5109_cov_59.796732_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=30.4 corr=0 origname=NODE_3_length_244736_cov_30.363539_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=29.1 corr=0 origname=NODE_56_length_15109_cov_29.073512_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=30.4 corr=0 origname=NODE_3_length_244736_cov_30.363539_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=34.3 corr=0 origname=NODE_14_length_124410_cov_34.321857_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=44.5 corr=0 origname=NODE_52_length_21369_cov_44.482846_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00096 len=2568 cov=43.9 corr=0 origname=NODE_96_length_2568_cov_43.883730_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00080 len=3959 cov=49.1 corr=0 origname=NODE_80_length_3959_cov_49.097725_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=25.7 corr=0 origname=NODE_32_length_51407_cov_25.654240_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183691 cov=31.2 corr=0 origname=NODE_6_length_183691_cov_31.179303_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59898 cov=34.8 corr=0 origname=NODE_28_length_59898_cov_34.830120_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=146726 cov=32.8 corr=0 origname=NODE_11_length_146726_cov_32.822621_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22741 cov=65.2 corr=0 origname=NODE_51_length_22741_cov_65.223532_pilon sw=shovill-spades/1.1.0 date=20231107	709..10218	Toxin B	AB011549	traT	100	423 / 423	contig00090 len=2786 cov=26.9 corr=0 origname=NODE_90_length_2786_cov_26.882375_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=25.7 corr=0 origname=NODE_32_length_51407_cov_25.654240_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00092 len=2769 cov=98.1 corr=0 origname=NODE_92_length_2769_cov_98.140777_pilon sw=shovill-spades/1.1.0 date=20231107	2424..2554	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31683 cov=87.5 corr=0 origname=NODE_44_length_31683_cov_87.452583_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00058 len=13382 cov=81.0 corr=0 origname=NODE_58_length_13382_cov_81.041908_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128650	Escherichia_coli	516114456	689	0.5023	124.41 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_146.577_Circ,	109	5475860	4723615	3567352	110.497	115.925	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00079 len=5108 cov=54.6 corr=0 origname=NODE_79_length_5108_cov_54.557704_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314248 cov=35.7 corr=0 origname=NODE_2_length_314248_cov_35.744710_pilon sw=shovill-spades/1.1.0 date=20231107	113731..115713	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=146585 cov=31.9 corr=0 origname=NODE_10_length_146585_cov_31.852581_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	99.93	2997 / 2997	contig00047 len=25577 cov=14.0 corr=0 origname=NODE_47_length_25577_cov_14.039355_pilon sw=shovill-spades/1.1.0 date=20231107	5310..8306	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=146585 cov=31.9 corr=0 origname=NODE_10_length_146585_cov_31.852581_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=146585 cov=31.9 corr=0 origname=NODE_10_length_146585_cov_31.852581_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=56948 cov=29.1 corr=0 origname=NODE_30_length_56948_cov_29.060485_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00085 len=4241 cov=9.2 corr=1 origname=NODE_85_length_4241_cov_9.198313_pilon sw=shovill-spades/1.1.0 date=20231107	110..4012	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=445103 cov=32.8 corr=1 origname=NODE_1_length_445141_cov_32.807968_pilon sw=shovill-spades/1.1.0 date=20231107	297672..298241			etpD	100	1758 / 1758	contig00047 len=25577 cov=14.0 corr=0 origname=NODE_47_length_25577_cov_14.039355_pilon sw=shovill-spades/1.1.0 date=20231107	19486..21243	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=445103 cov=32.8 corr=1 origname=NODE_1_length_445141_cov_32.807968_pilon sw=shovill-spades/1.1.0 date=20231107	122488..122976	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314248 cov=35.7 corr=0 origname=NODE_2_length_314248_cov_35.744710_pilon sw=shovill-spades/1.1.0 date=20231107	95461..96861	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00017 len=109149 cov=28.2 corr=0 origname=NODE_17_length_109149_cov_28.159328_pilon sw=shovill-spades/1.1.0 date=20231107	42640..44040	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21370 cov=39.8 corr=0 origname=NODE_50_length_21370_cov_39.785939_pilon sw=shovill-spades/1.1.0 date=20231107	10497..11414	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=52183 cov=24.9 corr=1 origname=NODE_32_length_52183_cov_24.862551_pilon sw=shovill-spades/1.1.0 date=20231107	18818..20908	Adherence protein	AE005174	iss	98.3	294 / 294	contig00057 len=14532 cov=53.6 corr=0 origname=NODE_57_length_14532_cov_53.567343_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00084 len=4264 cov=53.2 corr=0 origname=NODE_84_length_4264_cov_53.207525_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78937 cov=38.8 corr=0 origname=NODE_23_length_78937_cov_38.769284_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78937 cov=38.8 corr=0 origname=NODE_23_length_78937_cov_38.769284_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00091 len=3658 cov=11.0 corr=0 origname=NODE_91_length_3658_cov_11.038968_pilon sw=shovill-spades/1.1.0 date=20231107	869..3079	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00079 len=5108 cov=54.6 corr=0 origname=NODE_79_length_5108_cov_54.557704_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=29.3 corr=0 origname=NODE_3_length_244736_cov_29.320256_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=31.6 corr=0 origname=NODE_55_length_15109_cov_31.557398_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=29.3 corr=0 origname=NODE_3_length_244736_cov_29.320256_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=29.8 corr=0 origname=NODE_14_length_124410_cov_29.761694_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21370 cov=39.8 corr=0 origname=NODE_50_length_21370_cov_39.785939_pilon sw=shovill-spades/1.1.0 date=20231107	2026..2979	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00092 len=3547 cov=50.0 corr=0 origname=NODE_92_length_3547_cov_49.985822_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00088 len=3959 cov=45.0 corr=0 origname=NODE_88_length_3959_cov_44.953723_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=52183 cov=24.9 corr=1 origname=NODE_32_length_52183_cov_24.862551_pilon sw=shovill-spades/1.1.0 date=20231107	23503..24543	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=184970 cov=32.3 corr=0 origname=NODE_7_length_184970_cov_32.344506_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59953 cov=33.2 corr=0 origname=NODE_28_length_59953_cov_33.238799_pilon sw=shovill-spades/1.1.0 date=20231107	4982..5945	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=146585 cov=31.9 corr=0 origname=NODE_10_length_146585_cov_31.852581_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.92	9510 / 9510	contig00060 len=10627 cov=5.5 corr=0 origname=NODE_60_length_10627_cov_5.531416_pilon sw=shovill-spades/1.1.0 date=20231107	944..10453	Toxin B	AB011549	traT	100	423 / 423	contig00101 len=2786 cov=27.3 corr=0 origname=NODE_101_length_2786_cov_27.304267_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=52183 cov=24.9 corr=1 origname=NODE_32_length_52183_cov_24.862551_pilon sw=shovill-spades/1.1.0 date=20231107	43110..43238	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00102 len=2769 cov=68.0 corr=0 origname=NODE_102_length_2769_cov_68.040702_pilon sw=shovill-spades/1.1.0 date=20231107	652..782	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00077 len=5523 cov=9.6 corr=0 origname=NODE_77_length_5523_cov_9.602909_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=9309 cov=13.6 corr=0 origname=NODE_64_length_9309_cov_13.587112_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128651	Escherichia_coli	553695714	757	0.5024	124.41 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_130.851_Circ,,Contig_2_53.0681_Circ,	113	5481274	4872730	3827818	114.945	112.488	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00074 len=7013 cov=94.9 corr=0 origname=NODE_74_length_7013_cov_94.856255_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=40.5 corr=0 origname=NODE_1_length_314496_cov_40.487515_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=146726 cov=34.2 corr=0 origname=NODE_10_length_146726_cov_34.160780_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00045 len=31678 cov=16.4 corr=0 origname=NODE_45_length_31678_cov_16.430905_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=146726 cov=34.2 corr=0 origname=NODE_10_length_146726_cov_34.160780_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=146726 cov=34.2 corr=0 origname=NODE_10_length_146726_cov_34.160780_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=58171 cov=31.7 corr=0 origname=NODE_31_length_58171_cov_31.714704_pilon sw=shovill-spades/1.1.0 date=20231107	56809..57462	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=12.1 corr=0 origname=NODE_60_length_11488_cov_12.148197_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=39.4 corr=0 origname=NODE_3_length_227891_cov_39.369802_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00045 len=31678 cov=16.4 corr=0 origname=NODE_45_length_31678_cov_16.430905_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217524 cov=33.8 corr=0 origname=NODE_4_length_217524_cov_33.829929_pilon sw=shovill-spades/1.1.0 date=20231107	122671..123159	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=40.5 corr=0 origname=NODE_1_length_314496_cov_40.487515_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21370 cov=41.3 corr=0 origname=NODE_52_length_21370_cov_41.285023_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=27.4 corr=0 origname=NODE_34_length_51407_cov_27.417121_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00059 len=14532 cov=56.0 corr=0 origname=NODE_59_length_14532_cov_56.046534_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00062 len=10978 cov=40.2 corr=0 origname=NODE_62_length_10978_cov_40.162396_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=45.0 corr=0 origname=NODE_23_length_78936_cov_45.020255_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=45.0 corr=0 origname=NODE_23_length_78936_cov_45.020255_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00091 len=3725 cov=15.2 corr=0 origname=NODE_91_length_3725_cov_15.232526_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00074 len=7013 cov=94.9 corr=0 origname=NODE_74_length_7013_cov_94.856255_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244637 cov=31.4 corr=1 origname=NODE_2_length_244637_cov_31.427155_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15109 cov=36.5 corr=0 origname=NODE_58_length_15109_cov_36.501998_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244637 cov=31.4 corr=1 origname=NODE_2_length_244637_cov_31.427155_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=33.9 corr=0 origname=NODE_16_length_124410_cov_33.930670_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21370 cov=41.3 corr=0 origname=NODE_52_length_21370_cov_41.285023_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00054 len=19457 cov=44.3 corr=1 origname=NODE_54_length_19457_cov_44.290354_pilon sw=shovill-spades/1.1.0 date=20231107	17370..18596	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00088 len=3959 cov=50.2 corr=0 origname=NODE_88_length_3959_cov_50.178128_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=27.4 corr=0 origname=NODE_34_length_51407_cov_27.417121_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183691 cov=34.9 corr=0 origname=NODE_7_length_183691_cov_34.900637_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59934 cov=38.0 corr=0 origname=NODE_29_length_59934_cov_37.997042_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=146726 cov=34.2 corr=0 origname=NODE_10_length_146726_cov_34.160780_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.92	8327 / 9510	contig00053 len=20852 cov=13.6 corr=0 origname=NODE_53_length_20852_cov_13.635952_pilon sw=shovill-spades/1.1.0 date=20231107	3..8329	Toxin B	AB011549	traT	100	423 / 423	contig00097 len=2786 cov=25.2 corr=0 origname=NODE_97_length_2786_cov_25.214100_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=27.4 corr=0 origname=NODE_34_length_51407_cov_27.417121_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00098 len=2769 cov=60.8 corr=0 origname=NODE_98_length_2769_cov_60.839432_pilon sw=shovill-spades/1.1.0 date=20231107	658..788	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=31678 cov=16.4 corr=0 origname=NODE_45_length_31678_cov_16.430905_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00067 len=9309 cov=20.3 corr=0 origname=NODE_67_length_9309_cov_20.260035_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128652	Escherichia_coli	709839130	753	0.5024	126.896 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_178.631_Circ,,Contig_2_57.2998_Circ,	139	5485518	5095399	4900202	140.688	107.656	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00074 len=5109 cov=70.3 corr=0 origname=NODE_74_length_5109_cov_70.269231_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=47.2 corr=0 origname=NODE_2_length_314496_cov_47.208187_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=146584 cov=43.7 corr=0 origname=NODE_10_length_146584_cov_43.704341_pilon sw=shovill-spades/1.1.0 date=20231107	135943..138747		44	ehxA	100	2997 / 2997	contig00044 len=31679 cov=113.5 corr=0 origname=NODE_44_length_31679_cov_113.516525_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=146584 cov=43.7 corr=0 origname=NODE_10_length_146584_cov_43.704341_pilon sw=shovill-spades/1.1.0 date=20231107	141488..142066	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=146584 cov=43.7 corr=0 origname=NODE_10_length_146584_cov_43.704341_pilon sw=shovill-spades/1.1.0 date=20231107	143224..144162	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=57145 cov=36.5 corr=0 origname=NODE_31_length_57145_cov_36.485943_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=81.8 corr=0 origname=NODE_60_length_11488_cov_81.787927_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=227891 cov=47.5 corr=0 origname=NODE_4_length_227891_cov_47.511918_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00044 len=31679 cov=113.5 corr=0 origname=NODE_44_length_31679_cov_113.516525_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=386782 cov=44.3 corr=0 origname=NODE_1_length_386782_cov_44.261302_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=47.2 corr=0 origname=NODE_2_length_314496_cov_47.208187_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=53.1 corr=0 origname=NODE_52_length_21369_cov_53.112370_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=36.4 corr=0 origname=NODE_34_length_51407_cov_36.441870_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=56.8 corr=0 origname=NODE_43_length_33152_cov_56.766341_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00057 len=14890 cov=84.6 corr=0 origname=NODE_57_length_14890_cov_84.643489_pilon sw=shovill-spades/1.1.0 date=20231107	11470..11763	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00022 len=78936 cov=52.0 corr=0 origname=NODE_22_length_78936_cov_51.964500_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00022 len=78936 cov=52.0 corr=0 origname=NODE_22_length_78936_cov_51.964500_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00058 len=13382 cov=116.9 corr=0 origname=NODE_58_length_13382_cov_116.855391_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00074 len=5109 cov=70.3 corr=0 origname=NODE_74_length_5109_cov_70.269231_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=38.1 corr=0 origname=NODE_3_length_244736_cov_38.059789_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=42.9 corr=0 origname=NODE_56_length_15109_cov_42.852910_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=38.1 corr=0 origname=NODE_3_length_244736_cov_38.059789_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00013 len=127491 cov=53.3 corr=0 origname=NODE_13_length_127491_cov_53.285126_pilon sw=shovill-spades/1.1.0 date=20231107	110496..111380	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=53.1 corr=0 origname=NODE_52_length_21369_cov_53.112370_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00083 len=4273 cov=80.9 corr=0 origname=NODE_83_length_4273_cov_80.923721_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00087 len=3959 cov=67.8 corr=0 origname=NODE_87_length_3959_cov_67.800414_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=36.4 corr=0 origname=NODE_34_length_51407_cov_36.441870_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183801 cov=40.1 corr=0 origname=NODE_8_length_183801_cov_40.111676_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00027 len=59929 cov=46.0 corr=0 origname=NODE_27_length_59929_cov_45.977289_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=146584 cov=43.7 corr=0 origname=NODE_10_length_146584_cov_43.704341_pilon sw=shovill-spades/1.1.0 date=20231107	133581..135275	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22666 cov=80.2 corr=0 origname=NODE_51_length_22666_cov_80.190742_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00100 len=2682 cov=36.3 corr=0 origname=NODE_100_length_2682_cov_36.297183_pilon sw=shovill-spades/1.1.0 date=20231107	1217..1639	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=36.4 corr=0 origname=NODE_34_length_51407_cov_36.441870_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00097 len=2769 cov=82.7 corr=0 origname=NODE_97_length_2769_cov_82.699403_pilon sw=shovill-spades/1.1.0 date=20231107	680..810	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31679 cov=113.5 corr=0 origname=NODE_44_length_31679_cov_113.516525_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00058 len=13382 cov=116.9 corr=0 origname=NODE_58_length_13382_cov_116.855391_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128653	Escherichia_coli	158055040	1223	0.5029	16.688 KB	90	adk_12,fumC_12,gyrB_8,icd_12,mdh_15*,purA_2,recA_2*	11*	:157:157	E	FimH82	24	astA,chuA,eae-g01-gamma,espA,espB,espJ,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	0		75	5393538	2079731	1092162	76.835	259.338	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	99.3362831858407	100	mdh_15*	purA	100	100	purA_2	recA	99.4117647058823	100	recA_2*		157	157	H_fliC			O1_wzx	99.86	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00278 len=5109 cov=17.8 corr=0 origname=NODE_278_length_5109_cov_17.756078_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00216 len=7673 cov=9.7 corr=5 origname=NODE_216_length_7673_cov_9.677658_pilon sw=shovill-spades/1.1.0 date=20231107	3491..5473	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00002 len=73476 cov=13.6 corr=5 origname=NODE_2_length_73476_cov_13.600436_pilon sw=shovill-spades/1.1.0 date=20231107	61666..64470		44	espA	100	579 / 579	contig00002 len=73476 cov=13.6 corr=5 origname=NODE_2_length_73476_cov_13.600436_pilon sw=shovill-spades/1.1.0 date=20231107	67211..67789	Type III secretions system	AE005174	espB	99.36	939 / 939	contig00002 len=73476 cov=13.6 corr=5 origname=NODE_2_length_73476_cov_13.600436_pilon sw=shovill-spades/1.1.0 date=20231107	68947..69885	Secreted protein B	AE005174	espJ	100	654 / 654	contig00336 len=3476 cov=11.5 corr=0 origname=NODE_336_length_3476_cov_11.492171_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00003 len=72538 cov=10.9 corr=12 origname=NODE_3_length_72538_cov_10.923627_pilon sw=shovill-spades/1.1.0 date=20231107	35073..35642			etpD	99.86	1458 / 1758	contig00408 len=2369 cov=7.0 corr=0 origname=NODE_409_length_2369_cov_7.046971_pilon sw=shovill-spades/1.1.0 date=20231107	825..2282	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00149 len=11066 cov=7.0 corr=3 origname=NODE_149_length_11066_cov_7.028064_pilon sw=shovill-spades/1.1.0 date=20231107	604..1092	Type 1 fimbriae		gad	100	1401 / 1401	contig00056 len=21317 cov=8.2 corr=6 origname=NODE_56_length_21317_cov_8.221803_pilon sw=shovill-spades/1.1.0 date=20231107	13193..14593	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00097 len=16032 cov=10.9 corr=1 origname=NODE_97_length_16032_cov_10.932627_pilon sw=shovill-spades/1.1.0 date=20231107	10417..11334	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00119 len=13986 cov=10.3 corr=2 origname=NODE_119_length_13986_cov_10.307377_pilon sw=shovill-spades/1.1.0 date=20231107	1785..3875	Adherence protein	AE005174	iss	98.3	294 / 294	contig00102 len=15633 cov=26.3 corr=1 origname=NODE_102_length_15633_cov_26.254150_pilon sw=shovill-spades/1.1.0 date=20231107	13398..13691	Increased serum survival	CP001509	iss	98.98	294 / 294	contig00345 len=3208 cov=14.7 corr=0 origname=NODE_345_length_3208_cov_14.712223_pilon sw=shovill-spades/1.1.0 date=20231107	2169..2462	Increased serum survival	CP001665	iss	98.98	294 / 294	contig00345 len=3208 cov=14.7 corr=0 origname=NODE_345_length_3208_cov_14.712223_pilon sw=shovill-spades/1.1.0 date=20231107	2169..2462	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00350 len=3135 cov=5.2 corr=1 origname=NODE_351_length_3135_cov_5.152760_pilon sw=shovill-spades/1.1.0 date=20231107	384..2594	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00278 len=5109 cov=17.8 corr=0 origname=NODE_278_length_5109_cov_17.756078_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	988 / 990	contig00107 len=15102 cov=12.7 corr=1 origname=NODE_107_length_15102_cov_12.688162_pilon sw=shovill-spades/1.1.0 date=20231107	4815..5802	Non-LEE encoded effector B	AE005174	nleB	100	981 / 981	contig00163 len=10277 cov=16.9 corr=0 origname=NODE_163_length_10277_cov_16.933242_pilon sw=shovill-spades/1.1.0 date=20231107	8355..9335	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00163 len=10277 cov=16.9 corr=0 origname=NODE_163_length_10277_cov_16.933242_pilon sw=shovill-spades/1.1.0 date=20231107	7302..8294	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00260 len=5768 cov=6.3 corr=5 origname=NODE_260_length_5768_cov_6.298397_pilon sw=shovill-spades/1.1.0 date=20231107	615..1499	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00254 len=5856 cov=12.8 corr=0 origname=NODE_254_length_5856_cov_12.752298_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00349 len=3139 cov=22.8 corr=0 origname=NODE_350_length_3139_cov_22.838911_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00315 len=3959 cov=16.4 corr=0 origname=NODE_315_length_3959_cov_16.369959_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	99.9	1041 / 1041	contig00405 len=2418 cov=3.7 corr=1 origname=NODE_406_length_2418_cov_3.678986_pilon sw=shovill-spades/1.1.0 date=20231107	632..1672	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00040 len=25107 cov=8.7 corr=3 origname=NODE_40_length_25107_cov_8.722018_pilon sw=shovill-spades/1.1.0 date=20231107	1459..2172	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00209 len=8066 cov=9.5 corr=0 origname=NODE_209_length_8066_cov_9.512853_pilon sw=shovill-spades/1.1.0 date=20231107	2200..3163	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00002 len=73476 cov=13.6 corr=5 origname=NODE_2_length_73476_cov_13.600436_pilon sw=shovill-spades/1.1.0 date=20231107	59304..60998	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00358 len=3037 cov=7.6 corr=0 origname=NODE_359_length_3037_cov_7.641208_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00121 len=13816 cov=8.2 corr=5 origname=NODE_121_length_13816_cov_8.164007_pilon sw=shovill-spades/1.1.0 date=20231107	8960..9088	Outer membrane protein complement resistance	AMTE01000156																																																																																																																													enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00375 len=2769 cov=14.2 corr=0 origname=NODE_376_length_2769_cov_14.184093_pilon sw=shovill-spades/1.1.0 date=20231107	680..810	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00367 len=2907 cov=4.5 corr=1 origname=NODE_368_length_2907_cov_4.541193_pilon sw=shovill-spades/1.1.0 date=20231107	1668..2349	AP001918	enterobacteriales	IncFII	95.79	261 / 261	contig00543 len=1039 cov=6.6 corr=0 origname=NODE_546_length_1039_cov_6.583333_pilon sw=shovill-spades/1.1.0 date=20231107	470..728	AY458016																					
SAM128654	Escherichia_coli	611894998	709	0.5023	126.896 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_129.458_Circ,	122	5481771	4978602	4227306	124.208	110.106	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00062 len=9472 cov=107.0 corr=0 origname=NODE_62_length_9472_cov_107.033046_pilon sw=shovill-spades/1.1.0 date=20231107	8875..8971	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=41.8 corr=0 origname=NODE_2_length_314496_cov_41.831653_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146726 cov=37.7 corr=0 origname=NODE_12_length_146726_cov_37.698121_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	100	2997 / 2997	contig00040 len=31679 cov=74.2 corr=0 origname=NODE_40_length_31679_cov_74.155439_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146726 cov=37.7 corr=0 origname=NODE_12_length_146726_cov_37.698121_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146726 cov=37.7 corr=0 origname=NODE_12_length_146726_cov_37.698121_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=56948 cov=33.2 corr=0 origname=NODE_28_length_56948_cov_33.182493_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=52.3 corr=0 origname=NODE_59_length_11488_cov_52.323155_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444771 cov=39.6 corr=0 origname=NODE_1_length_444771_cov_39.572711_pilon sw=shovill-spades/1.1.0 date=20231107	297340..297909			etpD	100	1758 / 1758	contig00040 len=31679 cov=74.2 corr=0 origname=NODE_40_length_31679_cov_74.155439_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444771 cov=39.6 corr=0 origname=NODE_1_length_444771_cov_39.572711_pilon sw=shovill-spades/1.1.0 date=20231107	122118..122606	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=41.8 corr=0 origname=NODE_2_length_314496_cov_41.831653_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00019 len=107685 cov=27.8 corr=0 origname=NODE_19_length_107685_cov_27.770619_pilon sw=shovill-spades/1.1.0 date=20231107	63646..65046	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=37.1 corr=0 origname=NODE_51_length_21369_cov_37.071764_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=30.5 corr=0 origname=NODE_32_length_51407_cov_30.512160_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00058 len=14532 cov=67.4 corr=0 origname=NODE_58_length_14532_cov_67.396441_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00080 len=4264 cov=46.7 corr=0 origname=NODE_80_length_4264_cov_46.721304_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=45.6 corr=0 origname=NODE_23_length_78936_cov_45.588395_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=45.6 corr=0 origname=NODE_23_length_78936_cov_45.588395_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00084 len=3725 cov=52.2 corr=0 origname=NODE_84_length_3725_cov_52.183269_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00062 len=9472 cov=107.0 corr=0 origname=NODE_62_length_9472_cov_107.033046_pilon sw=shovill-spades/1.1.0 date=20231107	5431..6756	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=33.6 corr=0 origname=NODE_3_length_244736_cov_33.634491_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=34.1 corr=0 origname=NODE_56_length_15109_cov_34.113197_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=33.6 corr=0 origname=NODE_3_length_244736_cov_33.634491_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=37.8 corr=0 origname=NODE_15_length_124410_cov_37.771250_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=37.1 corr=0 origname=NODE_51_length_21369_cov_37.071764_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00088 len=3446 cov=55.8 corr=0 origname=NODE_88_length_3446_cov_55.833979_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00076 len=4514 cov=68.3 corr=0 origname=NODE_76_length_4514_cov_68.277187_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=30.5 corr=0 origname=NODE_32_length_51407_cov_30.512160_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183801 cov=34.9 corr=0 origname=NODE_7_length_183801_cov_34.855027_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160492 cov=40.3 corr=0 origname=NODE_10_length_160492_cov_40.315110_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146726 cov=37.7 corr=0 origname=NODE_12_length_146726_cov_37.698121_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00050 len=22666 cov=54.0 corr=0 origname=NODE_50_length_22666_cov_53.958272_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00092 len=3036 cov=30.6 corr=0 origname=NODE_92_length_3036_cov_30.564346_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=30.5 corr=0 origname=NODE_32_length_51407_cov_30.512160_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=60.7 corr=0 origname=NODE_94_length_2769_cov_60.692308_pilon sw=shovill-spades/1.1.0 date=20231107	25..155	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00040 len=31679 cov=74.2 corr=0 origname=NODE_40_length_31679_cov_74.155439_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=9309 cov=86.4 corr=0 origname=NODE_64_length_9309_cov_86.363853_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128655	Escherichia_coli	586222494	777	0.5024	124.41 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_109.919_Circ,	120	5479119	4845584	4057382	122.539	113.074	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00071 len=7113 cov=115.0 corr=0 origname=NODE_71_length_7113_cov_115.020649_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314681 cov=40.2 corr=0 origname=NODE_2_length_314681_cov_40.187260_pilon sw=shovill-spades/1.1.0 date=20231107	113731..115713	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145661 cov=33.9 corr=0 origname=NODE_12_length_145661_cov_33.871217_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00048 len=25517 cov=14.0 corr=0 origname=NODE_48_length_25517_cov_13.988122_pilon sw=shovill-spades/1.1.0 date=20231107	5333..8329	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145661 cov=33.9 corr=0 origname=NODE_12_length_145661_cov_33.871217_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145661 cov=33.9 corr=0 origname=NODE_12_length_145661_cov_33.871217_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00026 len=65563 cov=33.6 corr=0 origname=NODE_26_length_65563_cov_33.551732_pilon sw=shovill-spades/1.1.0 date=20231107	64004..64657	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00064 len=9204 cov=9.4 corr=1 origname=NODE_64_length_9204_cov_9.371338_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=227891 cov=41.0 corr=0 origname=NODE_4_length_227891_cov_40.977103_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00048 len=25517 cov=14.0 corr=0 origname=NODE_48_length_25517_cov_13.988122_pilon sw=shovill-spades/1.1.0 date=20231107	19509..21266	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=386878 cov=36.3 corr=2 origname=NODE_1_length_386878_cov_36.347512_pilon sw=shovill-spades/1.1.0 date=20231107	292025..292513	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314681 cov=40.2 corr=0 origname=NODE_2_length_314681_cov_40.187260_pilon sw=shovill-spades/1.1.0 date=20231107	95461..96861	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00003 len=248093 cov=36.2 corr=0 origname=NODE_3_length_248093_cov_36.167853_pilon sw=shovill-spades/1.1.0 date=20231107	183048..184448	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=55.6 corr=0 origname=NODE_52_length_21369_cov_55.606448_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00051 len=21461 cov=34.5 corr=0 origname=NODE_51_length_21461_cov_34.482639_pilon sw=shovill-spades/1.1.0 date=20231107	1330..3420	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33153 cov=57.7 corr=0 origname=NODE_41_length_33153_cov_57.703587_pilon sw=shovill-spades/1.1.0 date=20231107	28868..29161	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00058 len=14532 cov=58.4 corr=0 origname=NODE_58_length_14532_cov_58.378990_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00021 len=79061 cov=41.9 corr=0 origname=NODE_21_length_79061_cov_41.947106_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00021 len=79061 cov=41.9 corr=0 origname=NODE_21_length_79061_cov_41.947106_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00090 len=3725 cov=8.2 corr=0 origname=NODE_90_length_3725_cov_8.238305_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00071 len=7113 cov=115.0 corr=0 origname=NODE_71_length_7113_cov_115.020649_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00007 len=183857 cov=34.9 corr=0 origname=NODE_7_length_183857_cov_34.892766_pilon sw=shovill-spades/1.1.0 date=20231107	176272..177252	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=30.4 corr=0 origname=NODE_56_length_15109_cov_30.399321_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00007 len=183857 cov=34.9 corr=0 origname=NODE_7_length_183857_cov_34.892766_pilon sw=shovill-spades/1.1.0 date=20231107	175219..176211	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=35.9 corr=0 origname=NODE_14_length_124410_cov_35.889430_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=55.6 corr=0 origname=NODE_52_length_21369_cov_55.606448_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00091 len=3617 cov=46.0 corr=0 origname=NODE_91_length_3617_cov_45.979013_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00081 len=4530 cov=60.9 corr=0 origname=NODE_81_length_4530_cov_60.866637_pilon sw=shovill-spades/1.1.0 date=20231107	1961..3201	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00045 len=30121 cov=29.9 corr=0 origname=NODE_45_length_30121_cov_29.932401_pilon sw=shovill-spades/1.1.0 date=20231107	1441..2481	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183911 cov=35.6 corr=0 origname=NODE_6_length_183911_cov_35.583990_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59940 cov=37.8 corr=0 origname=NODE_28_length_59940_cov_37.771358_pilon sw=shovill-spades/1.1.0 date=20231107	4969..5932	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=145661 cov=33.9 corr=0 origname=NODE_12_length_145661_cov_33.871217_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00142 len=1191 cov=33.6 corr=0 origname=NODE_143_length_1191_cov_33.591818_pilon sw=shovill-spades/1.1.0 date=20231107	479..901	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00045 len=30121 cov=29.9 corr=0 origname=NODE_45_length_30121_cov_29.932401_pilon sw=shovill-spades/1.1.0 date=20231107	21048..21176	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00101 len=2769 cov=51.3 corr=0 origname=NODE_101_length_2769_cov_51.336445_pilon sw=shovill-spades/1.1.0 date=20231107	1871..2001	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00075 len=5674 cov=10.0 corr=1 origname=NODE_75_length_5674_cov_9.976894_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=9309 cov=17.6 corr=0 origname=NODE_62_length_9309_cov_17.626817_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128656	Escherichia_coli	549742622	726	0.5024	124.41 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_124.742_Circ,	113	5480797	4856831	3805304	114.677	112.847	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5188 cov=45.9 corr=0 origname=NODE_76_length_5188_cov_45.915637_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314656 cov=39.6 corr=0 origname=NODE_1_length_314656_cov_39.582538_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00021 len=99167 cov=37.7 corr=0 origname=NODE_21_length_99167_cov_37.748829_pilon sw=shovill-spades/1.1.0 date=20231107	89450..92254		44	ehxA	100	2997 / 2997	contig00041 len=31675 cov=24.0 corr=0 origname=NODE_41_length_31675_cov_24.046764_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00021 len=99167 cov=37.7 corr=0 origname=NODE_21_length_99167_cov_37.748829_pilon sw=shovill-spades/1.1.0 date=20231107	94995..95573	Type III secretions system	AE005174	espB	100	939 / 939	contig00021 len=99167 cov=37.7 corr=0 origname=NODE_21_length_99167_cov_37.748829_pilon sw=shovill-spades/1.1.0 date=20231107	96731..97669	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=65366 cov=31.4 corr=0 origname=NODE_27_length_65366_cov_31.372624_pilon sw=shovill-spades/1.1.0 date=20231107	64004..64657	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=16.9 corr=0 origname=NODE_59_length_11488_cov_16.934632_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=37.4 corr=0 origname=NODE_3_length_227891_cov_37.372112_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00041 len=31675 cov=24.0 corr=0 origname=NODE_41_length_31675_cov_24.046764_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217411 cov=32.7 corr=0 origname=NODE_4_length_217411_cov_32.688188_pilon sw=shovill-spades/1.1.0 date=20231107	122558..123046	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314656 cov=39.6 corr=0 origname=NODE_1_length_314656_cov_39.582538_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00018 len=107685 cov=29.2 corr=0 origname=NODE_18_length_107685_cov_29.159832_pilon sw=shovill-spades/1.1.0 date=20231107	42640..44040	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21369 cov=38.0 corr=0 origname=NODE_50_length_21369_cov_38.016214_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00049 len=21461 cov=30.7 corr=0 origname=NODE_49_length_21461_cov_30.656809_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00058 len=14627 cov=59.5 corr=0 origname=NODE_58_length_14627_cov_59.461819_pilon sw=shovill-spades/1.1.0 date=20231107	11207..11500	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00071 len=7178 cov=44.9 corr=0 origname=NODE_71_length_7178_cov_44.948074_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78937 cov=40.2 corr=0 origname=NODE_24_length_78937_cov_40.193834_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78937 cov=40.2 corr=0 origname=NODE_24_length_78937_cov_40.193834_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00086 len=3658 cov=15.5 corr=0 origname=NODE_86_length_3658_cov_15.541632_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5188 cov=45.9 corr=0 origname=NODE_76_length_5188_cov_45.915637_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=31.6 corr=0 origname=NODE_2_length_244736_cov_31.606246_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=37.0 corr=0 origname=NODE_56_length_15109_cov_36.954455_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=31.6 corr=0 origname=NODE_2_length_244736_cov_31.606246_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=33.5 corr=0 origname=NODE_15_length_124410_cov_33.507284_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21369 cov=38.0 corr=0 origname=NODE_50_length_21369_cov_38.016214_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00105 len=2397 cov=40.7 corr=0 origname=NODE_105_length_2397_cov_40.692975_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00080 len=4530 cov=51.6 corr=0 origname=NODE_80_length_4530_cov_51.614328_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00043 len=30121 cov=26.0 corr=0 origname=NODE_43_length_30121_cov_26.045854_pilon sw=shovill-spades/1.1.0 date=20231107	1441..2481	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183801 cov=35.2 corr=0 origname=NODE_8_length_183801_cov_35.212356_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59958 cov=36.1 corr=0 origname=NODE_29_length_59958_cov_36.095011_pilon sw=shovill-spades/1.1.0 date=20231107	4987..5950	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00021 len=99167 cov=37.7 corr=0 origname=NODE_21_length_99167_cov_37.748829_pilon sw=shovill-spades/1.1.0 date=20231107	87088..88782	Translocated intimin receptor protein	EU871626	toxB	99.91	7874 / 9510	contig00051 len=20397 cov=20.6 corr=0 origname=NODE_51_length_20397_cov_20.584015_pilon sw=shovill-spades/1.1.0 date=20231107	1..7874	Toxin B	AB011549	traT	100	423 / 423	contig00111 len=2117 cov=28.2 corr=0 origname=NODE_111_length_2117_cov_28.202369_pilon sw=shovill-spades/1.1.0 date=20231107	479..901	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00043 len=30121 cov=26.0 corr=0 origname=NODE_43_length_30121_cov_26.045854_pilon sw=shovill-spades/1.1.0 date=20231107	21048..21176	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=58.7 corr=0 origname=NODE_93_length_2769_cov_58.733383_pilon sw=shovill-spades/1.1.0 date=20231107	343..473	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00041 len=31675 cov=24.0 corr=0 origname=NODE_41_length_31675_cov_24.046764_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=9309 cov=23.8 corr=0 origname=NODE_64_length_9309_cov_23.775548_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128657	Escherichia_coli	662909390	756	0.5024	124.41 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_259.707_Circ,,Contig_2_30.4381_Circ,	132	5484548	5010467	4584740	133.894	109.461	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00074 len=5108 cov=54.1 corr=0 origname=NODE_74_length_5108_cov_54.133546_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=47.2 corr=0 origname=NODE_1_length_314496_cov_47.195490_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=147782 cov=46.6 corr=0 origname=NODE_12_length_147782_cov_46.623193_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	100	2997 / 2997	contig00043 len=31680 cov=80.0 corr=0 origname=NODE_43_length_31680_cov_79.987306_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=147782 cov=46.6 corr=0 origname=NODE_12_length_147782_cov_46.623193_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=147782 cov=46.6 corr=0 origname=NODE_12_length_147782_cov_46.623193_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56948 cov=37.5 corr=0 origname=NODE_32_length_56948_cov_37.536609_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=56.3 corr=0 origname=NODE_61_length_11488_cov_56.309467_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=226788 cov=44.3 corr=0 origname=NODE_3_length_226788_cov_44.298041_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00043 len=31680 cov=80.0 corr=0 origname=NODE_43_length_31680_cov_79.987306_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217442 cov=41.0 corr=0 origname=NODE_4_length_217442_cov_41.034368_pilon sw=shovill-spades/1.1.0 date=20231107	122488..122976	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=47.2 corr=0 origname=NODE_1_length_314496_cov_47.195490_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=33.8 corr=0 origname=NODE_52_length_21369_cov_33.820331_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=33.3 corr=0 origname=NODE_34_length_51407_cov_33.250585_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00058 len=13432 cov=64.8 corr=0 origname=NODE_58_length_13432_cov_64.843715_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00068 len=7997 cov=51.6 corr=0 origname=NODE_68_length_7997_cov_51.590185_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=47.6 corr=0 origname=NODE_24_length_78936_cov_47.565223_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=47.6 corr=0 origname=NODE_24_length_78936_cov_47.565223_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00059 len=13382 cov=65.9 corr=0 origname=NODE_59_length_13382_cov_65.860733_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00074 len=5108 cov=54.1 corr=0 origname=NODE_74_length_5108_cov_54.133546_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=37.7 corr=1 origname=NODE_2_length_244736_cov_37.738997_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=43.4 corr=0 origname=NODE_55_length_15109_cov_43.432215_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=37.7 corr=1 origname=NODE_2_length_244736_cov_37.738997_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=41.5 corr=0 origname=NODE_15_length_124410_cov_41.524393_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=33.8 corr=0 origname=NODE_52_length_21369_cov_33.820331_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00085 len=3718 cov=76.8 corr=0 origname=NODE_85_length_3718_cov_76.754342_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00082 len=3959 cov=53.8 corr=0 origname=NODE_82_length_3959_cov_53.827042_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=33.3 corr=0 origname=NODE_34_length_51407_cov_33.250585_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183801 cov=39.6 corr=0 origname=NODE_7_length_183801_cov_39.565669_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59893 cov=45.2 corr=0 origname=NODE_29_length_59893_cov_45.167837_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=147782 cov=46.6 corr=0 origname=NODE_12_length_147782_cov_46.623193_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22666 cov=54.8 corr=0 origname=NODE_51_length_22666_cov_54.782281_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00093 len=2786 cov=38.8 corr=0 origname=NODE_93_length_2786_cov_38.788126_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=33.3 corr=0 origname=NODE_34_length_51407_cov_33.250585_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=121.1 corr=0 origname=NODE_94_length_2769_cov_121.075056_pilon sw=shovill-spades/1.1.0 date=20231107	2311..2441	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31680 cov=80.0 corr=0 origname=NODE_43_length_31680_cov_79.987306_pilon sw=shovill-spades/1.1.0 date=20231107	26612..27293	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00059 len=13382 cov=65.9 corr=0 origname=NODE_59_length_13382_cov_65.860733_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128658	Escherichia_coli	676416598	706	0.5024	145.661 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_213.996_Circ,	134	5481524	5035676	4680368	136.003	108.853	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00071 len=5109 cov=69.4 corr=0 origname=NODE_71_length_5109_cov_69.431048_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=47.3 corr=0 origname=NODE_1_length_314655_cov_47.277769_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00014 len=145661 cov=41.3 corr=0 origname=NODE_14_length_145661_cov_41.333963_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00042 len=31680 cov=111.7 corr=0 origname=NODE_42_length_31680_cov_111.701732_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00014 len=145661 cov=41.3 corr=0 origname=NODE_14_length_145661_cov_41.333963_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00014 len=145661 cov=41.3 corr=0 origname=NODE_14_length_145661_cov_41.333963_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=65366 cov=38.9 corr=0 origname=NODE_28_length_65366_cov_38.908388_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00056 len=11488 cov=74.0 corr=0 origname=NODE_56_length_11488_cov_74.041765_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=47.0 corr=0 origname=NODE_3_length_227891_cov_46.985518_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00042 len=31680 cov=111.7 corr=0 origname=NODE_42_length_31680_cov_111.701732_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217524 cov=40.0 corr=0 origname=NODE_4_length_217524_cov_40.033574_pilon sw=shovill-spades/1.1.0 date=20231107	122671..123159	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=47.3 corr=0 origname=NODE_1_length_314655_cov_47.277769_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00020 len=108352 cov=30.8 corr=0 origname=NODE_20_length_108352_cov_30.804149_pilon sw=shovill-spades/1.1.0 date=20231107	42640..44040	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00048 len=21369 cov=50.8 corr=0 origname=NODE_48_length_21369_cov_50.807642_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=33.4 corr=0 origname=NODE_33_length_51407_cov_33.386780_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33152 cov=52.0 corr=0 origname=NODE_41_length_33152_cov_52.016999_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00053 len=14532 cov=64.7 corr=0 origname=NODE_53_length_14532_cov_64.703552_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=49.6 corr=0 origname=NODE_25_length_78936_cov_49.585731_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=49.6 corr=0 origname=NODE_25_length_78936_cov_49.585731_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00081 len=3725 cov=78.7 corr=0 origname=NODE_81_length_3725_cov_78.683269_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00071 len=5109 cov=69.4 corr=0 origname=NODE_71_length_5109_cov_69.431048_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=38.2 corr=0 origname=NODE_2_length_244736_cov_38.213485_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00051 len=15109 cov=41.9 corr=0 origname=NODE_51_length_15109_cov_41.868225_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=38.2 corr=0 origname=NODE_2_length_244736_cov_38.213485_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=43.1 corr=0 origname=NODE_17_length_124410_cov_43.114439_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00048 len=21369 cov=50.8 corr=0 origname=NODE_48_length_21369_cov_50.807642_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00082 len=3619 cov=71.7 corr=0 origname=NODE_82_length_3619_cov_71.682823_pilon sw=shovill-spades/1.1.0 date=20231107	922..2148	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00077 len=3959 cov=54.0 corr=0 origname=NODE_77_length_3959_cov_53.988366_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=33.4 corr=0 origname=NODE_33_length_51407_cov_33.386780_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183691 cov=40.6 corr=0 origname=NODE_8_length_183691_cov_40.616988_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00011 len=160520 cov=44.2 corr=0 origname=NODE_11_length_160520_cov_44.168667_pilon sw=shovill-spades/1.1.0 date=20231107	105549..106512	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00014 len=145661 cov=41.3 corr=0 origname=NODE_14_length_145661_cov_41.333963_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00047 len=22666 cov=80.9 corr=0 origname=NODE_47_length_22666_cov_80.940022_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00107 len=1756 cov=31.3 corr=0 origname=NODE_107_length_1756_cov_31.321922_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=33.4 corr=0 origname=NODE_33_length_51407_cov_33.386780_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00090 len=2769 cov=99.9 corr=0 origname=NODE_90_length_2769_cov_99.930919_pilon sw=shovill-spades/1.1.0 date=20231107	172..302	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31680 cov=111.7 corr=0 origname=NODE_42_length_31680_cov_111.701732_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=9309 cov=115.8 corr=0 origname=NODE_61_length_9309_cov_115.828596_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128659	Escherichia_coli	689634660	734	0.5024	124.41 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_237.15_Circ,	138	5482319	4979056	4770594	140.152	110.107	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=47.2 corr=0 origname=NODE_76_length_5109_cov_47.243922_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=49.0 corr=0 origname=NODE_1_length_314655_cov_49.010227_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00021 len=100108 cov=44.2 corr=0 origname=NODE_21_length_100108_cov_44.229611_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00046 len=31682 cov=101.8 corr=0 origname=NODE_46_length_31682_cov_101.821880_pilon sw=shovill-spades/1.1.0 date=20231107	17510..20506	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00021 len=100108 cov=44.2 corr=0 origname=NODE_21_length_100108_cov_44.229611_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00021 len=100108 cov=44.2 corr=0 origname=NODE_21_length_100108_cov_44.229611_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00044 len=33840 cov=39.2 corr=0 origname=NODE_44_length_33840_cov_39.157427_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=68.6 corr=0 origname=NODE_63_length_11488_cov_68.555848_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=226756 cov=46.1 corr=0 origname=NODE_3_length_226756_cov_46.093680_pilon sw=shovill-spades/1.1.0 date=20231107	145728..146297			etpD	100	1758 / 1758	contig00046 len=31682 cov=101.8 corr=0 origname=NODE_46_length_31682_cov_101.821880_pilon sw=shovill-spades/1.1.0 date=20231107	4573..6330	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=216971 cov=41.5 corr=0 origname=NODE_4_length_216971_cov_41.486965_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=49.0 corr=0 origname=NODE_1_length_314655_cov_49.010227_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00002 len=251120 cov=40.1 corr=2 origname=NODE_2_length_251120_cov_40.107956_pilon sw=shovill-spades/1.1.0 date=20231107	183157..184557	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=51.6 corr=0 origname=NODE_52_length_21369_cov_51.616740_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=30.0 corr=0 origname=NODE_34_length_51407_cov_29.971373_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00045 len=33152 cov=52.6 corr=0 origname=NODE_45_length_33152_cov_52.640634_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00062 len=14045 cov=79.6 corr=0 origname=NODE_62_length_14045_cov_79.593235_pilon sw=shovill-spades/1.1.0 date=20231107	2028..2321	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=47.7 corr=0 origname=NODE_25_length_78936_cov_47.729380_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=47.7 corr=0 origname=NODE_25_length_78936_cov_47.729380_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00087 len=3725 cov=62.7 corr=0 origname=NODE_87_length_3725_cov_62.705559_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=47.2 corr=0 origname=NODE_76_length_5109_cov_47.243922_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00013 len=128247 cov=42.9 corr=0 origname=NODE_13_length_128247_cov_42.924998_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00059 len=15109 cov=33.9 corr=0 origname=NODE_59_length_15109_cov_33.853842_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=128247 cov=42.9 corr=0 origname=NODE_13_length_128247_cov_42.924998_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=47.5 corr=0 origname=NODE_16_length_124410_cov_47.462930_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=51.6 corr=0 origname=NODE_52_length_21369_cov_51.616740_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00097 len=2568 cov=50.6 corr=0 origname=NODE_97_length_2568_cov_50.605168_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00085 len=3959 cov=70.8 corr=0 origname=NODE_85_length_3959_cov_70.809462_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=30.0 corr=0 origname=NODE_34_length_51407_cov_29.971373_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00015 len=124522 cov=39.6 corr=0 origname=NODE_15_length_124522_cov_39.601868_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59959 cov=45.7 corr=0 origname=NODE_29_length_59959_cov_45.736721_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00021 len=100108 cov=44.2 corr=0 origname=NODE_21_length_100108_cov_44.229611_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22666 cov=72.8 corr=0 origname=NODE_51_length_22666_cov_72.814884_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00115 len=1756 cov=24.9 corr=0 origname=NODE_115_length_1756_cov_24.903904_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=30.0 corr=0 origname=NODE_34_length_51407_cov_29.971373_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=111.1 corr=0 origname=NODE_93_length_2769_cov_111.133682_pilon sw=shovill-spades/1.1.0 date=20231107	2395..2525	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00046 len=31682 cov=101.8 corr=0 origname=NODE_46_length_31682_cov_101.821880_pilon sw=shovill-spades/1.1.0 date=20231107	26614..27295	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00067 len=9309 cov=117.4 corr=0 origname=NODE_67_length_9309_cov_117.350618_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128660	Escherichia_coli	595931336	775	0.5024	124.41 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_169.822_Circ,	121	5486776	4913457	4116326	122.543	111.668	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5108 cov=43.7 corr=0 origname=NODE_76_length_5108_cov_43.700817_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=217941 cov=41.1 corr=0 origname=NODE_3_length_217941_cov_41.139215_pilon sw=shovill-spades/1.1.0 date=20231107	17016..18998	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146726 cov=36.5 corr=0 origname=NODE_12_length_146726_cov_36.538575_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00045 len=31681 cov=91.7 corr=0 origname=NODE_45_length_31681_cov_91.680880_pilon sw=shovill-spades/1.1.0 date=20231107	17509..20505	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146726 cov=36.5 corr=0 origname=NODE_12_length_146726_cov_36.538575_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146726 cov=36.5 corr=0 origname=NODE_12_length_146726_cov_36.538575_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=58171 cov=32.9 corr=0 origname=NODE_31_length_58171_cov_32.938722_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=52.6 corr=0 origname=NODE_61_length_11488_cov_52.583662_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=227891 cov=42.0 corr=0 origname=NODE_2_length_227891_cov_41.966536_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00045 len=31681 cov=91.7 corr=0 origname=NODE_45_length_31681_cov_91.680880_pilon sw=shovill-spades/1.1.0 date=20231107	4572..6329	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00013 len=141837 cov=34.9 corr=1 origname=NODE_13_length_141837_cov_34.909641_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	99.79	1401 / 1401	contig00020 len=104827 cov=27.9 corr=0 origname=NODE_20_length_104827_cov_27.890343_pilon sw=shovill-spades/1.1.0 date=20231107	39782..41182	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00053 len=21369 cov=35.8 corr=0 origname=NODE_53_length_21369_cov_35.834759_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00036 len=51407 cov=27.3 corr=0 origname=NODE_36_length_51407_cov_27.301504_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00044 len=33152 cov=33.5 corr=0 origname=NODE_44_length_33152_cov_33.480143_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00052 len=21529 cov=67.2 corr=0 origname=NODE_52_length_21529_cov_67.153466_pilon sw=shovill-spades/1.1.0 date=20231107	18109..18402	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=42.4 corr=0 origname=NODE_25_length_78936_cov_42.358526_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=42.4 corr=0 origname=NODE_25_length_78936_cov_42.358526_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00085 len=3725 cov=55.7 corr=0 origname=NODE_85_length_3725_cov_55.662080_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5108 cov=43.7 corr=0 origname=NODE_76_length_5108_cov_43.700817_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00001 len=244736 cov=33.2 corr=0 origname=NODE_1_length_244736_cov_33.163098_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00057 len=15109 cov=35.6 corr=0 origname=NODE_57_length_15109_cov_35.556665_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00001 len=244736 cov=33.2 corr=0 origname=NODE_1_length_244736_cov_33.163098_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=38.0 corr=0 origname=NODE_16_length_124410_cov_37.978523_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00053 len=21369 cov=35.8 corr=0 origname=NODE_53_length_21369_cov_35.834759_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00086 len=3547 cov=51.3 corr=0 origname=NODE_86_length_3547_cov_51.318576_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00081 len=3959 cov=53.2 corr=0 origname=NODE_81_length_3959_cov_53.169080_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00036 len=51407 cov=27.3 corr=0 origname=NODE_36_length_51407_cov_27.301504_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183791 cov=34.7 corr=0 origname=NODE_7_length_183791_cov_34.745313_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160521 cov=39.3 corr=0 origname=NODE_9_length_160521_cov_39.335318_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146726 cov=36.5 corr=0 origname=NODE_12_length_146726_cov_36.538575_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00055 len=19379 cov=58.7 corr=0 origname=NODE_55_length_19379_cov_58.747511_pilon sw=shovill-spades/1.1.0 date=20231107	9237..18746	Toxin B	AB011549	traT	100	423 / 423	contig00112 len=1756 cov=27.8 corr=0 origname=NODE_112_length_1756_cov_27.811411_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00036 len=51407 cov=27.3 corr=0 origname=NODE_36_length_51407_cov_27.301504_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00092 len=2769 cov=79.3 corr=0 origname=NODE_92_length_2769_cov_79.295370_pilon sw=shovill-spades/1.1.0 date=20231107	4..134	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=31681 cov=91.7 corr=0 origname=NODE_45_length_31681_cov_91.680880_pilon sw=shovill-spades/1.1.0 date=20231107	26613..27294	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=9309 cov=97.2 corr=0 origname=NODE_64_length_9309_cov_97.193209_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128661	Escherichia_coli	468012116	769	0.5024	124.411 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_107.743_Circ,	103	5478374	4515880	3237500	104.866	121.313	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5108 cov=35.1 corr=0 origname=NODE_76_length_5108_cov_35.064979_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00004 len=217941 cov=32.5 corr=0 origname=NODE_4_length_217941_cov_32.498967_pilon sw=shovill-spades/1.1.0 date=20231107	17016..18998	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=28.3 corr=0 origname=NODE_11_length_145661_cov_28.255403_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00044 len=31680 cov=74.2 corr=0 origname=NODE_44_length_31680_cov_74.222514_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=28.3 corr=0 origname=NODE_11_length_145661_cov_28.255403_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=28.3 corr=0 origname=NODE_11_length_145661_cov_28.255403_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00042 len=33136 cov=28.3 corr=0 origname=NODE_42_length_33136_cov_28.302285_pilon sw=shovill-spades/1.1.0 date=20231107	31774..32427	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=54.3 corr=0 origname=NODE_60_length_11488_cov_54.331315_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444776 cov=30.5 corr=0 origname=NODE_1_length_444776_cov_30.485613_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00044 len=31680 cov=74.2 corr=0 origname=NODE_44_length_31680_cov_74.222514_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444776 cov=30.5 corr=0 origname=NODE_1_length_444776_cov_30.485613_pilon sw=shovill-spades/1.1.0 date=20231107	322267..322755	Type 1 fimbriae		hlyE	98.47	918 / 918	contig00050 len=21472 cov=28.5 corr=0 origname=NODE_50_length_21472_cov_28.523689_pilon sw=shovill-spades/1.1.0 date=20231107	10060..10977	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00038 len=43526 cov=22.4 corr=0 origname=NODE_38_length_43526_cov_22.369863_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00056 len=15156 cov=56.7 corr=0 origname=NODE_56_length_15156_cov_56.693196_pilon sw=shovill-spades/1.1.0 date=20231107	11736..12029	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00062 len=10978 cov=30.9 corr=0 origname=NODE_62_length_10978_cov_30.926334_pilon sw=shovill-spades/1.1.0 date=20231107	6693..6986	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00022 len=78936 cov=33.8 corr=0 origname=NODE_22_length_78936_cov_33.821752_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00022 len=78936 cov=33.8 corr=0 origname=NODE_22_length_78936_cov_33.821752_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00088 len=3725 cov=50.3 corr=0 origname=NODE_88_length_3725_cov_50.296918_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5108 cov=35.1 corr=0 origname=NODE_76_length_5108_cov_35.064979_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=26.1 corr=0 origname=NODE_3_length_244736_cov_26.098334_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00057 len=15109 cov=25.1 corr=0 origname=NODE_57_length_15109_cov_25.149620_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=26.1 corr=0 origname=NODE_3_length_244736_cov_26.098334_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124411 cov=29.7 corr=0 origname=NODE_14_length_124411_cov_29.749389_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21472 cov=28.5 corr=0 origname=NODE_50_length_21472_cov_28.523689_pilon sw=shovill-spades/1.1.0 date=20231107	18495..19448	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00108 len=2397 cov=35.3 corr=0 origname=NODE_108_length_2397_cov_35.349957_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00082 len=4530 cov=46.1 corr=0 origname=NODE_82_length_4530_cov_46.064879_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00038 len=43526 cov=22.4 corr=0 origname=NODE_38_length_43526_cov_22.369863_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00002 len=311706 cov=28.8 corr=0 origname=NODE_2_length_311706_cov_28.755057_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59921 cov=32.0 corr=0 origname=NODE_28_length_59921_cov_31.991125_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=28.3 corr=0 origname=NODE_11_length_145661_cov_28.255403_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00049 len=22666 cov=54.7 corr=0 origname=NODE_49_length_22666_cov_54.728594_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00099 len=2786 cov=25.1 corr=0 origname=NODE_99_length_2786_cov_25.135436_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00038 len=43526 cov=22.4 corr=0 origname=NODE_38_length_43526_cov_22.369863_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00100 len=2769 cov=50.2 corr=0 origname=NODE_100_length_2769_cov_50.238984_pilon sw=shovill-spades/1.1.0 date=20231107	2301..2431	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31680 cov=74.2 corr=0 origname=NODE_44_length_31680_cov_74.222514_pilon sw=shovill-spades/1.1.0 date=20231107	26612..27293	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=9310 cov=79.1 corr=0 origname=NODE_65_length_9310_cov_79.073978_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128662	Escherichia_coli	644972900	762	0.5023	142.106 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_190.205_Circ,	129	5486761	4964065	4462350	131.512	110.529	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=5108 cov=56.0 corr=0 origname=NODE_73_length_5108_cov_56.022125_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314656 cov=44.3 corr=0 origname=NODE_1_length_314656_cov_44.319180_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145661 cov=40.1 corr=0 origname=NODE_13_length_145661_cov_40.075812_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00042 len=31683 cov=117.9 corr=0 origname=NODE_42_length_31683_cov_117.921056_pilon sw=shovill-spades/1.1.0 date=20231107	17511..20507	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145661 cov=40.1 corr=0 origname=NODE_13_length_145661_cov_40.075812_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145661 cov=40.1 corr=0 origname=NODE_13_length_145661_cov_40.075812_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00004 len=236266 cov=38.4 corr=0 origname=NODE_4_length_236266_cov_38.405001_pilon sw=shovill-spades/1.1.0 date=20231107	767..1420	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=78.5 corr=0 origname=NODE_59_length_11488_cov_78.500483_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00005 len=227891 cov=44.5 corr=0 origname=NODE_5_length_227891_cov_44.517577_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00042 len=31683 cov=117.9 corr=0 origname=NODE_42_length_31683_cov_117.921056_pilon sw=shovill-spades/1.1.0 date=20231107	4574..6331	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00006 len=217524 cov=38.3 corr=0 origname=NODE_6_length_217524_cov_38.338297_pilon sw=shovill-spades/1.1.0 date=20231107	122671..123159	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314656 cov=44.3 corr=0 origname=NODE_1_length_314656_cov_44.319180_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00002 len=248869 cov=36.7 corr=0 origname=NODE_2_length_248869_cov_36.711630_pilon sw=shovill-spades/1.1.0 date=20231107	64313..65713	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21472 cov=40.8 corr=0 origname=NODE_51_length_21472_cov_40.843038_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00029 len=51407 cov=30.8 corr=0 origname=NODE_29_length_51407_cov_30.784687_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33152 cov=42.7 corr=0 origname=NODE_41_length_33152_cov_42.678836_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00055 len=15139 cov=87.6 corr=0 origname=NODE_55_length_15139_cov_87.575027_pilon sw=shovill-spades/1.1.0 date=20231107	11719..12012	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00022 len=78937 cov=46.9 corr=0 origname=NODE_22_length_78937_cov_46.896545_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00022 len=78937 cov=46.9 corr=0 origname=NODE_22_length_78937_cov_46.896545_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00084 len=3725 cov=65.8 corr=0 origname=NODE_84_length_3725_cov_65.829114_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00073 len=5108 cov=56.0 corr=0 origname=NODE_73_length_5108_cov_56.022125_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244637 cov=34.8 corr=1 origname=NODE_3_length_244637_cov_34.767725_pilon sw=shovill-spades/1.1.0 date=20231107	6507..7487	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=38.0 corr=0 origname=NODE_56_length_15109_cov_38.041883_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244637 cov=34.8 corr=1 origname=NODE_3_length_244637_cov_34.767725_pilon sw=shovill-spades/1.1.0 date=20231107	7548..8540	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=127491 cov=47.7 corr=0 origname=NODE_15_length_127491_cov_47.747276_pilon sw=shovill-spades/1.1.0 date=20231107	110496..111380	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21472 cov=40.8 corr=0 origname=NODE_51_length_21472_cov_40.843038_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00085 len=3617 cov=54.0 corr=0 origname=NODE_85_length_3617_cov_53.951787_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00081 len=3959 cov=51.0 corr=0 origname=NODE_81_length_3959_cov_50.975440_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00029 len=51407 cov=30.8 corr=0 origname=NODE_29_length_51407_cov_30.784687_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00009 len=183807 cov=38.2 corr=0 origname=NODE_9_length_183807_cov_38.222011_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00011 len=160521 cov=42.7 corr=0 origname=NODE_11_length_160521_cov_42.729122_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145661 cov=40.1 corr=0 origname=NODE_13_length_145661_cov_40.075812_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00050 len=22741 cov=89.3 corr=0 origname=NODE_50_length_22741_cov_89.316556_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00111 len=1756 cov=31.2 corr=0 origname=NODE_111_length_1756_cov_31.229429_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00029 len=51407 cov=30.8 corr=0 origname=NODE_29_length_51407_cov_30.784687_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00089 len=2769 cov=90.2 corr=0 origname=NODE_89_length_2769_cov_90.151232_pilon sw=shovill-spades/1.1.0 date=20231107	2007..2137	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31683 cov=117.9 corr=0 origname=NODE_42_length_31683_cov_117.921056_pilon sw=shovill-spades/1.1.0 date=20231107	26615..27296	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00063 len=9309 cov=128.2 corr=0 origname=NODE_63_length_9309_cov_128.246908_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128663	Escherichia_coli	749813636	765	0.5024	124.635 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_234.978_Circ,	148	5487476	5043656	5186244	150.451	108.799	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00072 len=7113 cov=119.4 corr=0 origname=NODE_72_length_7113_cov_119.422529_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=51.5 corr=0 origname=NODE_1_length_314655_cov_51.473646_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146717 cov=48.9 corr=0 origname=NODE_12_length_146717_cov_48.901655_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00044 len=31684 cov=129.7 corr=0 origname=NODE_44_length_31684_cov_129.684804_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146717 cov=48.9 corr=0 origname=NODE_12_length_146717_cov_48.901655_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146717 cov=48.9 corr=0 origname=NODE_12_length_146717_cov_48.901655_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=58228 cov=40.9 corr=0 origname=NODE_31_length_58228_cov_40.871080_pilon sw=shovill-spades/1.1.0 date=20231107	767..1420	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=80.4 corr=0 origname=NODE_59_length_11488_cov_80.436343_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=226756 cov=51.5 corr=0 origname=NODE_2_length_226756_cov_51.529989_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00044 len=31684 cov=129.7 corr=0 origname=NODE_44_length_31684_cov_129.684804_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00006 len=190721 cov=44.4 corr=0 origname=NODE_6_length_190721_cov_44.361952_pilon sw=shovill-spades/1.1.0 date=20231107	122022..122510	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=51.5 corr=0 origname=NODE_1_length_314655_cov_51.473646_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=44.3 corr=0 origname=NODE_51_length_21369_cov_44.313375_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=36.0 corr=0 origname=NODE_34_length_51407_cov_36.039832_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33153 cov=44.6 corr=1 origname=NODE_43_length_33153_cov_44.569597_pilon sw=shovill-spades/1.1.0 date=20231107	28868..29161	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00057 len=14487 cov=76.1 corr=0 origname=NODE_57_length_14487_cov_76.062309_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=55.2 corr=0 origname=NODE_25_length_78936_cov_55.175319_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=55.2 corr=0 origname=NODE_25_length_78936_cov_55.175319_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00080 len=3959 cov=93.9 corr=0 origname=NODE_80_length_3959_cov_93.855998_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00072 len=7113 cov=119.4 corr=0 origname=NODE_72_length_7113_cov_119.422529_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00014 len=128247 cov=47.9 corr=0 origname=NODE_14_length_128247_cov_47.893708_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=40.4 corr=0 origname=NODE_55_length_15109_cov_40.363963_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00014 len=128247 cov=47.9 corr=0 origname=NODE_14_length_128247_cov_47.893708_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=48.9 corr=0 origname=NODE_16_length_124410_cov_48.943508_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=44.3 corr=0 origname=NODE_51_length_21369_cov_44.313375_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00083 len=3718 cov=69.7 corr=0 origname=NODE_83_length_3718_cov_69.654535_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00081 len=3959 cov=68.6 corr=0 origname=NODE_81_length_3959_cov_68.633144_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=36.0 corr=0 origname=NODE_34_length_51407_cov_36.039832_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183801 cov=44.0 corr=0 origname=NODE_8_length_183801_cov_43.962267_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59921 cov=48.5 corr=0 origname=NODE_29_length_59921_cov_48.474244_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146717 cov=48.9 corr=0 origname=NODE_12_length_146717_cov_48.901655_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00050 len=22666 cov=87.1 corr=0 origname=NODE_50_length_22666_cov_87.113577_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00117 len=1756 cov=33.7 corr=0 origname=NODE_117_length_1756_cov_33.719520_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=36.0 corr=0 origname=NODE_34_length_51407_cov_36.039832_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2779 cov=109.4 corr=0 origname=NODE_95_length_2779_cov_109.369792_pilon sw=shovill-spades/1.1.0 date=20231107	2394..2524	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31684 cov=129.7 corr=0 origname=NODE_44_length_31684_cov_129.684804_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=9309 cov=129.4 corr=0 origname=NODE_65_length_9309_cov_129.432415_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128664	Escherichia_coli	680264442	747	0.5024	124.41 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_275.528_Circ,	138	5483933	4928933	4697316	139.398	111.26	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00069 len=5109 cov=43.9 corr=0 origname=NODE_69_length_5109_cov_43.910323_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314655 cov=47.6 corr=0 origname=NODE_2_length_314655_cov_47.553681_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00017 len=102588 cov=41.5 corr=0 origname=NODE_17_length_102588_cov_41.474804_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00043 len=31682 cov=106.8 corr=0 origname=NODE_43_length_31682_cov_106.826216_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00017 len=102588 cov=41.5 corr=0 origname=NODE_17_length_102588_cov_41.474804_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00017 len=102588 cov=41.5 corr=0 origname=NODE_17_length_102588_cov_41.474804_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56948 cov=35.3 corr=0 origname=NODE_32_length_56948_cov_35.270380_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00057 len=11488 cov=67.8 corr=0 origname=NODE_57_length_11488_cov_67.842853_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=253086 cov=45.8 corr=0 origname=NODE_3_length_253086_cov_45.834471_pilon sw=shovill-spades/1.1.0 date=20231107	106790..107359			etpD	100	1758 / 1758	contig00043 len=31682 cov=106.8 corr=0 origname=NODE_43_length_31682_cov_106.826216_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=361407 cov=43.4 corr=0 origname=NODE_1_length_361407_cov_43.445801_pilon sw=shovill-spades/1.1.0 date=20231107	292783..293271	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314655 cov=47.6 corr=0 origname=NODE_2_length_314655_cov_47.553681_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21472 cov=34.0 corr=0 origname=NODE_51_length_21472_cov_33.950797_pilon sw=shovill-spades/1.1.0 date=20231107	10060..10977	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=32.6 corr=0 origname=NODE_34_length_51407_cov_32.569179_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00054 len=15156 cov=92.8 corr=0 origname=NODE_54_length_15156_cov_92.771457_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00075 len=4264 cov=50.7 corr=0 origname=NODE_75_length_4264_cov_50.724179_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4264	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00022 len=78936 cov=49.5 corr=0 origname=NODE_22_length_78936_cov_49.471850_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00022 len=78936 cov=49.5 corr=0 origname=NODE_22_length_78936_cov_49.471850_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00082 len=3725 cov=68.8 corr=0 origname=NODE_82_length_3725_cov_68.805724_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00069 len=5109 cov=43.9 corr=0 origname=NODE_69_length_5109_cov_43.910323_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00004 len=244736 cov=37.9 corr=0 origname=NODE_4_length_244736_cov_37.888741_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=35.5 corr=0 origname=NODE_55_length_15109_cov_35.503529_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00004 len=244736 cov=37.9 corr=0 origname=NODE_4_length_244736_cov_37.888741_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=43.0 corr=0 origname=NODE_14_length_124410_cov_43.042906_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21472 cov=34.0 corr=0 origname=NODE_51_length_21472_cov_33.950797_pilon sw=shovill-spades/1.1.0 date=20231107	18495..19448	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00084 len=3617 cov=61.4 corr=0 origname=NODE_84_length_3617_cov_61.449234_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00079 len=3959 cov=65.7 corr=0 origname=NODE_79_length_3959_cov_65.672958_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=32.6 corr=0 origname=NODE_34_length_51407_cov_32.569179_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183801 cov=39.7 corr=0 origname=NODE_8_length_183801_cov_39.690131_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=60175 cov=44.3 corr=0 origname=NODE_29_length_60175_cov_44.262133_pilon sw=shovill-spades/1.1.0 date=20231107	4950..5913	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00017 len=102588 cov=41.5 corr=0 origname=NODE_17_length_102588_cov_41.474804_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00050 len=22666 cov=84.8 corr=0 origname=NODE_50_length_22666_cov_84.818206_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00118 len=1756 cov=24.3 corr=0 origname=NODE_118_length_1756_cov_24.302102_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=32.6 corr=0 origname=NODE_34_length_51407_cov_32.569179_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2777 cov=127.3 corr=0 origname=NODE_95_length_2777_cov_127.265450_pilon sw=shovill-spades/1.1.0 date=20231107	13..143	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31682 cov=106.8 corr=0 origname=NODE_43_length_31682_cov_106.826216_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=9309 cov=130.4 corr=0 origname=NODE_62_length_9309_cov_130.390757_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128665	Escherichia_coli	652402894	735	0.5024	128.046 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_166.47_Circ,	131	5481666	4944428	4516224	133.632	110.865	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=49.0 corr=0 origname=NODE_76_length_5109_cov_49.017537_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314655 cov=44.9 corr=0 origname=NODE_2_length_314655_cov_44.884618_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145661 cov=38.9 corr=0 origname=NODE_12_length_145661_cov_38.919819_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00044 len=31680 cov=108.2 corr=0 origname=NODE_44_length_31680_cov_108.154199_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145661 cov=38.9 corr=0 origname=NODE_12_length_145661_cov_38.919819_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145661 cov=38.9 corr=0 origname=NODE_12_length_145661_cov_38.919819_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=65366 cov=36.2 corr=0 origname=NODE_30_length_65366_cov_36.202421_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=64.7 corr=0 origname=NODE_60_length_11488_cov_64.690533_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=369373 cov=41.7 corr=0 origname=NODE_1_length_369373_cov_41.715258_pilon sw=shovill-spades/1.1.0 date=20231107	221942..222511			etpD	100	1758 / 1758	contig00044 len=31680 cov=108.2 corr=0 origname=NODE_44_length_31680_cov_108.154199_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=369373 cov=41.7 corr=0 origname=NODE_1_length_369373_cov_41.715258_pilon sw=shovill-spades/1.1.0 date=20231107	46720..47208	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314655 cov=44.9 corr=0 origname=NODE_2_length_314655_cov_44.884618_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=48.1 corr=0 origname=NODE_51_length_21369_cov_48.108516_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=32.7 corr=0 origname=NODE_34_length_51407_cov_32.730260_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00059 len=14487 cov=65.9 corr=0 origname=NODE_59_length_14487_cov_65.905113_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00071 len=7178 cov=59.0 corr=0 origname=NODE_71_length_7178_cov_59.045012_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=49.2 corr=0 origname=NODE_23_length_78936_cov_49.177652_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=49.2 corr=0 origname=NODE_23_length_78936_cov_49.177652_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00086 len=3725 cov=80.1 corr=0 origname=NODE_86_length_3725_cov_80.104568_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=49.0 corr=0 origname=NODE_76_length_5109_cov_49.017537_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00014 len=128199 cov=41.3 corr=0 origname=NODE_14_length_128199_cov_41.281778_pilon sw=shovill-spades/1.1.0 date=20231107	120614..121594	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00057 len=15109 cov=40.6 corr=0 origname=NODE_57_length_15109_cov_40.557331_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00014 len=128199 cov=41.3 corr=0 origname=NODE_14_length_128199_cov_41.281778_pilon sw=shovill-spades/1.1.0 date=20231107	119561..120553	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00025 len=77051 cov=43.6 corr=0 origname=NODE_25_length_77051_cov_43.577859_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=48.1 corr=0 origname=NODE_51_length_21369_cov_48.108516_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00108 len=2397 cov=47.5 corr=0 origname=NODE_108_length_2397_cov_47.500867_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=59.1 corr=0 origname=NODE_83_length_3959_cov_59.103154_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=32.7 corr=0 origname=NODE_34_length_51407_cov_32.730260_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00005 len=183604 cov=37.6 corr=0 origname=NODE_5_length_183604_cov_37.643420_pilon sw=shovill-spades/1.1.0 date=20231107	160066..160779	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00031 len=59928 cov=42.8 corr=0 origname=NODE_31_length_59928_cov_42.838461_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=145661 cov=38.9 corr=0 origname=NODE_12_length_145661_cov_38.919819_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00050 len=22666 cov=80.4 corr=0 origname=NODE_50_length_22666_cov_80.394197_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00121 len=1756 cov=24.6 corr=0 origname=NODE_121_length_1756_cov_24.613213_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=32.7 corr=0 origname=NODE_34_length_51407_cov_32.730260_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2769 cov=78.0 corr=0 origname=NODE_95_length_2769_cov_77.968633_pilon sw=shovill-spades/1.1.0 date=20231107	298..428	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31680 cov=108.2 corr=0 origname=NODE_44_length_31680_cov_108.154199_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=9309 cov=116.4 corr=0 origname=NODE_65_length_9309_cov_116.380126_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128666	Escherichia_coli	646705488	760	0.5024	120.111 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_163.531_Circ,,Contig_2_52.7016_Circ,	133	5485638	4845632	4469244	134.943	113.207	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=54.7 corr=0 origname=NODE_76_length_5109_cov_54.678358_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=43.5 corr=0 origname=NODE_2_length_314496_cov_43.532857_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00008 len=146585 cov=38.9 corr=0 origname=NODE_8_length_146585_cov_38.948141_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00046 len=31678 cov=101.7 corr=0 origname=NODE_46_length_31678_cov_101.746351_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00008 len=146585 cov=38.9 corr=0 origname=NODE_8_length_146585_cov_38.948141_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00008 len=146585 cov=38.9 corr=0 origname=NODE_8_length_146585_cov_38.948141_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=65851 cov=35.4 corr=0 origname=NODE_27_length_65851_cov_35.411496_pilon sw=shovill-spades/1.1.0 date=20231107	1093..1746	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00062 len=11488 cov=71.6 corr=0 origname=NODE_62_length_11488_cov_71.631306_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=445646 cov=40.6 corr=0 origname=NODE_1_length_445646_cov_40.632752_pilon sw=shovill-spades/1.1.0 date=20231107	298215..298784			etpD	100	1758 / 1758	contig00046 len=31678 cov=101.7 corr=0 origname=NODE_46_length_31678_cov_101.746351_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=445646 cov=40.6 corr=0 origname=NODE_1_length_445646_cov_40.632752_pilon sw=shovill-spades/1.1.0 date=20231107	122892..123380	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=43.5 corr=0 origname=NODE_2_length_314496_cov_43.532857_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00054 len=21369 cov=51.9 corr=0 origname=NODE_54_length_21369_cov_51.914466_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00035 len=51407 cov=29.6 corr=0 origname=NODE_35_length_51407_cov_29.612441_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00045 len=33152 cov=52.6 corr=0 origname=NODE_45_length_33152_cov_52.594961_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00061 len=14487 cov=63.1 corr=0 origname=NODE_61_length_14487_cov_63.059253_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00022 len=78936 cov=46.0 corr=0 origname=NODE_22_length_78936_cov_46.048094_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00022 len=78936 cov=46.0 corr=0 origname=NODE_22_length_78936_cov_46.048094_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00085 len=3725 cov=63.9 corr=0 origname=NODE_85_length_3725_cov_63.938085_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=54.7 corr=0 origname=NODE_76_length_5109_cov_54.678358_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00011 len=128237 cov=39.6 corr=0 origname=NODE_11_length_128237_cov_39.590389_pilon sw=shovill-spades/1.1.0 date=20231107	120652..121632	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00059 len=15109 cov=37.3 corr=0 origname=NODE_59_length_15109_cov_37.276735_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00011 len=128237 cov=39.6 corr=0 origname=NODE_11_length_128237_cov_39.590389_pilon sw=shovill-spades/1.1.0 date=20231107	119599..120591	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=41.5 corr=0 origname=NODE_15_length_124410_cov_41.538478_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00054 len=21369 cov=51.9 corr=0 origname=NODE_54_length_21369_cov_51.914466_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3617 cov=58.4 corr=0 origname=NODE_87_length_3617_cov_58.387691_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=49.4 corr=0 origname=NODE_83_length_3959_cov_49.420372_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00035 len=51407 cov=29.6 corr=0 origname=NODE_35_length_51407_cov_29.612441_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00004 len=183901 cov=35.3 corr=1 origname=NODE_4_length_183901_cov_35.339465_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59940 cov=43.2 corr=0 origname=NODE_29_length_59940_cov_43.164013_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00008 len=146585 cov=38.9 corr=0 origname=NODE_8_length_146585_cov_38.948141_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00053 len=22666 cov=72.8 corr=0 origname=NODE_53_length_22666_cov_72.837076_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00114 len=1756 cov=36.8 corr=0 origname=NODE_114_length_1756_cov_36.778378_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00035 len=51407 cov=29.6 corr=0 origname=NODE_35_length_51407_cov_29.612441_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00096 len=2769 cov=75.0 corr=0 origname=NODE_96_length_2769_cov_75.042196_pilon sw=shovill-spades/1.1.0 date=20231107	2166..2296	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00046 len=31678 cov=101.7 corr=0 origname=NODE_46_length_31678_cov_101.746351_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00067 len=9309 cov=116.1 corr=0 origname=NODE_67_length_9309_cov_116.149816_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128667	Escherichia_coli	750176856	762	0.5024	124.41 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_227.76_Circ,	147	5487183	5092774	5187806	149.037	107.744	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00078 len=5109 cov=51.9 corr=0 origname=NODE_78_length_5109_cov_51.865086_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=53.9 corr=0 origname=NODE_1_length_314496_cov_53.914047_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=46.8 corr=0 origname=NODE_11_length_145661_cov_46.760953_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00045 len=31678 cov=102.7 corr=0 origname=NODE_45_length_31678_cov_102.726027_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=46.8 corr=0 origname=NODE_11_length_145661_cov_46.760953_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=46.8 corr=0 origname=NODE_11_length_145661_cov_46.760953_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=65366 cov=41.5 corr=0 origname=NODE_28_length_65366_cov_41.478820_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=76.2 corr=0 origname=NODE_63_length_11488_cov_76.192770_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00004 len=227891 cov=52.9 corr=0 origname=NODE_4_length_227891_cov_52.887129_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00045 len=31678 cov=102.7 corr=0 origname=NODE_45_length_31678_cov_102.726027_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00002 len=273564 cov=45.0 corr=0 origname=NODE_2_length_273564_cov_45.011295_pilon sw=shovill-spades/1.1.0 date=20231107	204865..205353	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=53.9 corr=0 origname=NODE_1_length_314496_cov_53.914047_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00053 len=21369 cov=66.7 corr=0 origname=NODE_53_length_21369_cov_66.733763_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=34.4 corr=0 origname=NODE_34_length_51407_cov_34.441909_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00044 len=33152 cov=65.7 corr=0 origname=NODE_44_length_33152_cov_65.688697_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00057 len=15928 cov=99.2 corr=1 origname=NODE_57_length_15925_cov_99.185361_pilon sw=shovill-spades/1.1.0 date=20231107	3917..4210	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=53.0 corr=0 origname=NODE_23_length_78936_cov_53.036299_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=53.0 corr=0 origname=NODE_23_length_78936_cov_53.036299_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00086 len=3725 cov=73.4 corr=0 origname=NODE_86_length_3725_cov_73.400385_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00078 len=5109 cov=51.9 corr=0 origname=NODE_78_length_5109_cov_51.865086_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244312 cov=40.3 corr=0 origname=NODE_3_length_244312_cov_40.313147_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00060 len=15109 cov=42.9 corr=0 origname=NODE_60_length_15109_cov_42.908177_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244312 cov=40.3 corr=0 origname=NODE_3_length_244312_cov_40.313147_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=48.6 corr=0 origname=NODE_15_length_124410_cov_48.639597_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00053 len=21369 cov=66.7 corr=0 origname=NODE_53_length_21369_cov_66.733763_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00088 len=3446 cov=64.7 corr=0 origname=NODE_88_length_3446_cov_64.682563_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00084 len=3959 cov=62.8 corr=0 origname=NODE_84_length_3959_cov_62.806101_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=34.4 corr=0 origname=NODE_34_length_51407_cov_34.441909_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183691 cov=44.2 corr=0 origname=NODE_7_length_183691_cov_44.203273_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00030 len=59987 cov=51.3 corr=0 origname=NODE_30_length_59987_cov_51.266145_pilon sw=shovill-spades/1.1.0 date=20231107	5016..5979	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=46.8 corr=0 origname=NODE_11_length_145661_cov_46.760953_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00052 len=22666 cov=76.2 corr=0 origname=NODE_52_length_22666_cov_76.175460_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00111 len=1756 cov=28.6 corr=0 origname=NODE_111_length_1756_cov_28.623423_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=34.4 corr=0 origname=NODE_34_length_51407_cov_34.441909_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00092 len=2769 cov=104.9 corr=0 origname=NODE_92_length_2769_cov_104.901792_pilon sw=shovill-spades/1.1.0 date=20231107	2155..2285	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=31678 cov=102.7 corr=0 origname=NODE_45_length_31678_cov_102.726027_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00068 len=9309 cov=119.2 corr=0 origname=NODE_68_length_9309_cov_119.163918_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128668	Escherichia_coli	633183408	754	0.5024	126.774 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_180.851_Circ,,Contig_2_59.4444_Circ,	131	5483555	4820494	4381496	132.984	113.755	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1287 / 1287	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00077 len=5109 cov=39.5 corr=0 origname=NODE_77_length_5109_cov_39.493224_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314454 cov=46.0 corr=0 origname=NODE_1_length_314454_cov_45.998177_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=38.9 corr=0 origname=NODE_11_length_145661_cov_38.893137_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00046 len=31676 cov=90.3 corr=0 origname=NODE_46_length_31676_cov_90.337882_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=38.9 corr=0 origname=NODE_11_length_145661_cov_38.893137_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=38.9 corr=0 origname=NODE_11_length_145661_cov_38.893137_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=58171 cov=33.0 corr=0 origname=NODE_28_length_58171_cov_32.996763_pilon sw=shovill-spades/1.1.0 date=20231107	56809..57462	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00064 len=11488 cov=63.4 corr=0 origname=NODE_64_length_11488_cov_63.354304_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=45.5 corr=0 origname=NODE_3_length_227891_cov_45.451128_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00046 len=31676 cov=90.3 corr=0 origname=NODE_46_length_31676_cov_90.337882_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217745 cov=38.2 corr=2 origname=NODE_4_length_217745_cov_38.161564_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314454 cov=46.0 corr=0 origname=NODE_1_length_314454_cov_45.998177_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00055 len=21369 cov=50.2 corr=0 origname=NODE_55_length_21369_cov_50.239731_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00038 len=43526 cov=29.2 corr=0 origname=NODE_38_length_43526_cov_29.249384_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00044 len=32984 cov=49.4 corr=0 origname=NODE_44_length_32984_cov_49.393032_pilon sw=shovill-spades/1.1.0 date=20231107	3825..4118	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00062 len=14890 cov=68.0 corr=0 origname=NODE_62_length_14890_cov_68.021353_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=45.3 corr=0 origname=NODE_23_length_78936_cov_45.300602_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=45.3 corr=0 origname=NODE_23_length_78936_cov_45.300602_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00089 len=3725 cov=66.5 corr=0 origname=NODE_89_length_3725_cov_66.503302_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00077 len=5109 cov=39.5 corr=0 origname=NODE_77_length_5109_cov_39.493224_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=33.8 corr=0 origname=NODE_2_length_244736_cov_33.755756_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00060 len=15109 cov=33.3 corr=0 origname=NODE_60_length_15109_cov_33.346051_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=33.8 corr=0 origname=NODE_2_length_244736_cov_33.755756_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124411 cov=43.4 corr=0 origname=NODE_17_length_124411_cov_43.445391_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00055 len=21369 cov=50.2 corr=0 origname=NODE_55_length_21369_cov_50.239731_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00106 len=2397 cov=35.4 corr=0 origname=NODE_106_length_2397_cov_35.421943_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00087 len=3959 cov=52.2 corr=0 origname=NODE_87_length_3959_cov_52.233971_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00038 len=43526 cov=29.2 corr=0 origname=NODE_38_length_43526_cov_29.249384_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183801 cov=38.0 corr=0 origname=NODE_6_length_183801_cov_37.974013_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00008 len=157755 cov=43.8 corr=0 origname=NODE_8_length_157755_cov_43.844372_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=38.9 corr=0 origname=NODE_11_length_145661_cov_38.893137_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00053 len=22666 cov=67.7 corr=0 origname=NODE_53_length_22666_cov_67.723499_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00120 len=1756 cov=22.9 corr=0 origname=NODE_120_length_1756_cov_22.926126_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00038 len=43526 cov=29.2 corr=0 origname=NODE_38_length_43526_cov_29.249384_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00097 len=2769 cov=84.4 corr=0 origname=NODE_97_length_2769_cov_84.400672_pilon sw=shovill-spades/1.1.0 date=20231107	413..543	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00046 len=31676 cov=90.3 corr=0 origname=NODE_46_length_31676_cov_90.337882_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00068 len=9309 cov=107.2 corr=0 origname=NODE_68_length_9309_cov_107.160772_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128669	Escherichia_coli	699877178	757	0.5024	124.41 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_332.364_Circ,	140	5486995	4996588	4846932	141.937	109.814	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00075 len=7113 cov=127.1 corr=0 origname=NODE_75_length_7113_cov_127.078468_pilon sw=shovill-spades/1.1.0 date=20231107	6516..6612	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=47.8 corr=0 origname=NODE_1_length_314655_cov_47.839661_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=146726 cov=43.3 corr=0 origname=NODE_10_length_146726_cov_43.328639_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00047 len=31678 cov=111.2 corr=0 origname=NODE_47_length_31678_cov_111.238832_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=146726 cov=43.3 corr=0 origname=NODE_10_length_146726_cov_43.328639_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=146726 cov=43.3 corr=0 origname=NODE_10_length_146726_cov_43.328639_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=57145 cov=36.0 corr=0 origname=NODE_31_length_57145_cov_36.023276_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00065 len=11488 cov=76.1 corr=0 origname=NODE_65_length_11488_cov_76.103448_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=227891 cov=47.6 corr=0 origname=NODE_2_length_227891_cov_47.570746_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00047 len=31678 cov=111.2 corr=0 origname=NODE_47_length_31678_cov_111.238832_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=217649 cov=41.4 corr=0 origname=NODE_3_length_217649_cov_41.354191_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=47.8 corr=0 origname=NODE_1_length_314655_cov_47.839661_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00055 len=21369 cov=64.1 corr=0 origname=NODE_55_length_21369_cov_64.051462_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=36.0 corr=0 origname=NODE_34_length_51407_cov_35.965508_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00046 len=33152 cov=63.1 corr=0 origname=NODE_46_length_33152_cov_63.084178_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00062 len=14532 cov=68.0 corr=0 origname=NODE_62_length_14532_cov_68.035039_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=47.6 corr=0 origname=NODE_24_length_78936_cov_47.631885_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=47.6 corr=0 origname=NODE_24_length_78936_cov_47.631885_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00063 len=13382 cov=104.4 corr=0 origname=NODE_63_length_13382_cov_104.426830_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00075 len=7113 cov=127.1 corr=0 origname=NODE_75_length_7113_cov_127.078468_pilon sw=shovill-spades/1.1.0 date=20231107	3072..4397	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00013 len=128249 cov=43.5 corr=0 origname=NODE_13_length_128249_cov_43.473829_pilon sw=shovill-spades/1.1.0 date=20231107	120664..121644	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00060 len=15109 cov=38.5 corr=0 origname=NODE_60_length_15109_cov_38.546744_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=128249 cov=43.5 corr=0 origname=NODE_13_length_128249_cov_43.473829_pilon sw=shovill-spades/1.1.0 date=20231107	119611..120603	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=42.9 corr=0 origname=NODE_16_length_124410_cov_42.941143_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00055 len=21369 cov=64.1 corr=0 origname=NODE_55_length_21369_cov_64.051462_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00089 len=3446 cov=61.9 corr=0 origname=NODE_89_length_3446_cov_61.878689_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00087 len=3959 cov=58.8 corr=0 origname=NODE_87_length_3959_cov_58.824716_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=36.0 corr=0 origname=NODE_34_length_51407_cov_35.965508_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183801 cov=40.8 corr=0 origname=NODE_6_length_183801_cov_40.752028_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59957 cov=46.9 corr=0 origname=NODE_28_length_59957_cov_46.918735_pilon sw=shovill-spades/1.1.0 date=20231107	4986..5949	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=146726 cov=43.3 corr=0 origname=NODE_10_length_146726_cov_43.328639_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00054 len=22666 cov=80.9 corr=0 origname=NODE_54_length_22666_cov_80.923056_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00102 len=2682 cov=31.4 corr=0 origname=NODE_102_length_2682_cov_31.402547_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=36.0 corr=0 origname=NODE_34_length_51407_cov_35.965508_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00100 len=2769 cov=154.2 corr=0 origname=NODE_100_length_2769_cov_154.243465_pilon sw=shovill-spades/1.1.0 date=20231107	1880..2010	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00047 len=31678 cov=111.2 corr=0 origname=NODE_47_length_31678_cov_111.238832_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00063 len=13382 cov=104.4 corr=0 origname=NODE_63_length_13382_cov_104.426830_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128670	Escherichia_coli	426148866	708	0.4927	139.79 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_60.6624_Circ,	91	5821133	4652094	2942402	92.509	125.129	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00079 len=5108 cov=24.5 corr=0 origname=NODE_79_length_5108_cov_24.506877_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=283508 cov=25.7 corr=0 origname=NODE_3_length_283508_cov_25.702812_pilon sw=shovill-spades/1.1.0 date=20231107	82583..84565	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00014 len=139790 cov=22.7 corr=0 origname=NODE_14_length_139790_cov_22.746777_pilon sw=shovill-spades/1.1.0 date=20231107	1043..3847		44	ehxA	100	2997 / 2997	contig00041 len=31678 cov=37.0 corr=0 origname=NODE_41_length_31678_cov_36.954981_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00075 len=5810 cov=16.2 corr=0 origname=NODE_75_length_5810_cov_16.174856_pilon sw=shovill-spades/1.1.0 date=20231107	1638..2216	Type III secretions system	AE005174	espB	100	939 / 939	contig00075 len=5810 cov=16.2 corr=0 origname=NODE_75_length_5810_cov_16.174856_pilon sw=shovill-spades/1.1.0 date=20231107	3374..4312	Secreted protein B	AE005174	espJ	100	654 / 654	contig00040 len=33840 cov=22.4 corr=0 origname=NODE_40_length_33840_cov_22.446798_pilon sw=shovill-spades/1.1.0 date=20231107	32478..33131	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00062 len=11488 cov=20.9 corr=0 origname=NODE_62_length_11488_cov_20.942880_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=443720 cov=25.6 corr=0 origname=NODE_1_length_443720_cov_25.575411_pilon sw=shovill-spades/1.1.0 date=20231107	297345..297914			etpD	100	1758 / 1758	contig00041 len=31678 cov=37.0 corr=0 origname=NODE_41_length_31678_cov_36.954981_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=443720 cov=25.6 corr=0 origname=NODE_1_length_443720_cov_25.575411_pilon sw=shovill-spades/1.1.0 date=20231107	122022..122510	Type 1 fimbriae		gad	99.79	1401 / 1401	contig00003 len=283508 cov=25.7 corr=0 origname=NODE_3_length_283508_cov_25.702812_pilon sw=shovill-spades/1.1.0 date=20231107	64313..65713	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=19.3 corr=0 origname=NODE_51_length_21369_cov_19.315161_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=43506 cov=16.7 corr=0 origname=NODE_34_length_43506_cov_16.694875_pilon sw=shovill-spades/1.1.0 date=20231107	31256..33346	Adherence protein	AE005174	iss	98.3	294 / 294	contig00058 len=14532 cov=42.2 corr=0 origname=NODE_58_length_14532_cov_42.196593_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00090 len=4264 cov=27.7 corr=0 origname=NODE_90_length_4264_cov_27.715313_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78937 cov=28.9 corr=0 origname=NODE_24_length_78937_cov_28.923103_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78937 cov=28.9 corr=0 origname=NODE_24_length_78937_cov_28.923103_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00098 len=3725 cov=18.5 corr=0 origname=NODE_98_length_3725_cov_18.525316_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00079 len=5108 cov=24.5 corr=0 origname=NODE_79_length_5108_cov_24.506877_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00004 len=244736 cov=22.7 corr=0 origname=NODE_4_length_244736_cov_22.705561_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00070 len=6879 cov=13.1 corr=0 origname=NODE_70_length_6879_cov_13.142605_pilon sw=shovill-spades/1.1.0 date=20231107	1069..2058	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00004 len=244736 cov=22.7 corr=0 origname=NODE_4_length_244736_cov_22.705561_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124411 cov=26.7 corr=0 origname=NODE_17_length_124411_cov_26.716538_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=19.3 corr=0 origname=NODE_51_length_21369_cov_19.315161_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00114 len=2568 cov=27.0 corr=0 origname=NODE_114_length_2568_cov_26.958417_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00095 len=3959 cov=39.6 corr=0 origname=NODE_95_length_3959_cov_39.570321_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=43506 cov=16.7 corr=0 origname=NODE_34_length_43506_cov_16.694875_pilon sw=shovill-spades/1.1.0 date=20231107	27621..28661	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00037 len=40504 cov=26.0 corr=0 origname=NODE_37_length_40504_cov_25.983297_pilon sw=shovill-spades/1.1.0 date=20231107	16746..17459	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160523 cov=27.5 corr=0 origname=NODE_10_length_160523_cov_27.508652_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00014 len=139790 cov=22.7 corr=0 origname=NODE_14_length_139790_cov_22.746777_pilon sw=shovill-spades/1.1.0 date=20231107	4515..6209	Translocated intimin receptor protein	EU871626	toxB	99.88	9510 / 9510	contig00053 len=19379 cov=25.4 corr=0 origname=NODE_53_length_19379_cov_25.408026_pilon sw=shovill-spades/1.1.0 date=20231107	9237..18746	Toxin B	AB011549	traT	100	423 / 423	contig00106 len=2786 cov=22.4 corr=0 origname=NODE_106_length_2786_cov_22.399258_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=43506 cov=16.7 corr=0 origname=NODE_34_length_43506_cov_16.694875_pilon sw=shovill-spades/1.1.0 date=20231107	8926..9054	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00107 len=2769 cov=28.8 corr=0 origname=NODE_107_length_2769_cov_28.786034_pilon sw=shovill-spades/1.1.0 date=20231107	1526..1656	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00041 len=31678 cov=37.0 corr=0 origname=NODE_41_length_31678_cov_36.954981_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00065 len=9310 cov=41.8 corr=0 origname=NODE_65_length_9310_cov_41.751166_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128671	Escherichia_coli	709958678	772	0.5024	115.52 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_156.02_Circ,	139	5488575	5083121	4910272	141.363	107.976	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00077 len=5108 cov=67.4 corr=0 origname=NODE_77_length_5108_cov_67.413195_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=50.5 corr=0 origname=NODE_1_length_314655_cov_50.548604_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=147641 cov=49.0 corr=0 origname=NODE_11_length_147641_cov_48.962264_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00044 len=31676 cov=70.6 corr=0 origname=NODE_44_length_31676_cov_70.648504_pilon sw=shovill-spades/1.1.0 date=20231107	17504..20500	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=147641 cov=49.0 corr=0 origname=NODE_11_length_147641_cov_48.962264_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=147641 cov=49.0 corr=0 origname=NODE_11_length_147641_cov_48.962264_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=56948 cov=39.2 corr=0 origname=NODE_32_length_56948_cov_39.203018_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=49.1 corr=0 origname=NODE_63_length_11488_cov_49.072300_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=252876 cov=47.1 corr=1 origname=NODE_2_length_252914_cov_47.110639_pilon sw=shovill-spades/1.1.0 date=20231107	145732..146301			etpD	100	1758 / 1758	contig00044 len=31676 cov=70.6 corr=0 origname=NODE_44_length_31676_cov_70.648504_pilon sw=shovill-spades/1.1.0 date=20231107	4567..6324	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00016 len=115520 cov=41.3 corr=0 origname=NODE_16_length_115520_cov_41.255716_pilon sw=shovill-spades/1.1.0 date=20231107	68313..68801	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=50.5 corr=0 origname=NODE_1_length_314655_cov_50.548604_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	gad	99.79	1401 / 1401	contig00018 len=110277 cov=35.3 corr=0 origname=NODE_18_length_110277_cov_35.310230_pilon sw=shovill-spades/1.1.0 date=20231107	43438..44838	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=58.1 corr=0 origname=NODE_52_length_21369_cov_58.146724_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=33.6 corr=0 origname=NODE_34_length_51407_cov_33.579780_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=59.7 corr=0 origname=NODE_43_length_33152_cov_59.713772_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00059 len=14890 cov=89.3 corr=0 origname=NODE_59_length_14890_cov_89.319076_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00026 len=78934 cov=52.0 corr=0 origname=NODE_26_length_78934_cov_52.007914_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00026 len=78934 cov=52.0 corr=0 origname=NODE_26_length_78934_cov_52.007914_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00060 len=13382 cov=64.7 corr=0 origname=NODE_60_length_13382_cov_64.708224_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00077 len=5108 cov=67.4 corr=0 origname=NODE_77_length_5108_cov_67.413195_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=39.2 corr=0 origname=NODE_3_length_244736_cov_39.198259_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00057 len=15109 cov=43.9 corr=0 origname=NODE_57_length_15109_cov_43.909642_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=39.2 corr=0 origname=NODE_3_length_244736_cov_39.198259_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=45.1 corr=0 origname=NODE_14_length_124410_cov_45.056307_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=58.1 corr=0 origname=NODE_52_length_21369_cov_58.146724_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00102 len=2397 cov=59.6 corr=0 origname=NODE_102_length_2397_cov_59.607979_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00082 len=3959 cov=61.1 corr=0 origname=NODE_82_length_3959_cov_61.142192_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=33.6 corr=0 origname=NODE_34_length_51407_cov_33.579780_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00021 len=100553 cov=42.1 corr=0 origname=NODE_21_length_100553_cov_42.052179_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00008 len=160524 cov=48.0 corr=0 origname=NODE_8_length_160524_cov_47.955857_pilon sw=shovill-spades/1.1.0 date=20231107	105553..106516	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=147641 cov=49.0 corr=0 origname=NODE_11_length_147641_cov_48.962264_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22666 cov=53.0 corr=0 origname=NODE_51_length_22666_cov_53.041772_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00091 len=3036 cov=27.8 corr=0 origname=NODE_91_length_3036_cov_27.812564_pilon sw=shovill-spades/1.1.0 date=20231107	1571..1993	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=33.6 corr=0 origname=NODE_34_length_51407_cov_33.579780_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2773 cov=73.1 corr=0 origname=NODE_94_length_2773_cov_73.129008_pilon sw=shovill-spades/1.1.0 date=20231107	2394..2524	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31676 cov=70.6 corr=0 origname=NODE_44_length_31676_cov_70.648504_pilon sw=shovill-spades/1.1.0 date=20231107	26608..27289	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00060 len=13382 cov=64.7 corr=0 origname=NODE_60_length_13382_cov_64.708224_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128672	Escherichia_coli	392445768	728	0.5023	100.775 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_77.3671_Circ,	90	5466337	4345605	2713400	91.341	125.79	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00089 len=5108 cov=38.6 corr=0 origname=NODE_89_length_5108_cov_38.592386_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314655 cov=28.4 corr=0 origname=NODE_2_length_314655_cov_28.448923_pilon sw=shovill-spades/1.1.0 date=20231107	113730..115712	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00009 len=145661 cov=22.5 corr=0 origname=NODE_9_length_145661_cov_22.515752_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00057 len=20634 cov=26.5 corr=0 origname=NODE_57_length_20634_cov_26.453877_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00009 len=145661 cov=22.5 corr=0 origname=NODE_9_length_145661_cov_22.515752_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00009 len=145661 cov=22.5 corr=0 origname=NODE_9_length_145661_cov_22.515752_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00045 len=34585 cov=21.7 corr=0 origname=NODE_45_length_34585_cov_21.683597_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00067 len=11488 cov=16.9 corr=0 origname=NODE_67_length_11488_cov_16.851189_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444268 cov=24.6 corr=0 origname=NODE_1_length_444268_cov_24.580651_pilon sw=shovill-spades/1.1.0 date=20231107	297893..298462			etpD	100	1758 / 1758	contig00057 len=20634 cov=26.5 corr=0 origname=NODE_57_length_20634_cov_26.453877_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444268 cov=24.6 corr=0 origname=NODE_1_length_444268_cov_24.580651_pilon sw=shovill-spades/1.1.0 date=20231107	122671..123159	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314655 cov=28.4 corr=0 origname=NODE_2_length_314655_cov_28.448923_pilon sw=shovill-spades/1.1.0 date=20231107	95460..96860	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00055 len=21369 cov=29.4 corr=0 origname=NODE_55_length_21369_cov_29.426262_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00039 len=43526 cov=17.1 corr=1 origname=NODE_39_length_43526_cov_17.144745_pilon sw=shovill-spades/1.1.0 date=20231107	10161..12251	Adherence protein	AE005174	iss	98.3	294 / 294	contig00060 len=15130 cov=54.1 corr=0 origname=NODE_60_length_15130_cov_54.053660_pilon sw=shovill-spades/1.1.0 date=20231107	11736..12029	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00082 len=7178 cov=37.6 corr=0 origname=NODE_82_length_7178_cov_37.578806_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00021 len=78936 cov=31.5 corr=0 origname=NODE_21_length_78936_cov_31.542913_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00021 len=78936 cov=31.5 corr=0 origname=NODE_21_length_78936_cov_31.542913_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00064 len=13383 cov=23.1 corr=0 origname=NODE_64_length_13383_cov_23.137752_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00089 len=5108 cov=38.6 corr=0 origname=NODE_89_length_5108_cov_38.592386_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=21.1 corr=0 origname=NODE_3_length_244736_cov_21.054364_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00061 len=14721 cov=24.9 corr=0 origname=NODE_61_length_14721_cov_24.860355_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=21.1 corr=0 origname=NODE_3_length_244736_cov_21.054364_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00012 len=124411 cov=24.4 corr=0 origname=NODE_12_length_124411_cov_24.417415_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00055 len=21369 cov=29.4 corr=0 origname=NODE_55_length_21369_cov_29.426262_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00110 len=2397 cov=35.1 corr=0 origname=NODE_110_length_2397_cov_35.077190_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00093 len=4514 cov=38.1 corr=0 origname=NODE_93_length_4514_cov_38.085236_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00039 len=43526 cov=17.1 corr=1 origname=NODE_39_length_43526_cov_17.144745_pilon sw=shovill-spades/1.1.0 date=20231107	14846..15886	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00005 len=183691 cov=23.3 corr=0 origname=NODE_5_length_183691_cov_23.275550_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00027 len=59951 cov=26.5 corr=0 origname=NODE_27_length_59951_cov_26.463264_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00009 len=145661 cov=22.5 corr=0 origname=NODE_9_length_145661_cov_22.515752_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00071 len=10445 cov=9.4 corr=0 origname=NODE_71_length_10445_cov_9.427297_pilon sw=shovill-spades/1.1.0 date=20231107	84..9593	Toxin B	AB011549	traT	100	423 / 423	contig00125 len=1756 cov=16.1 corr=0 origname=NODE_125_length_1756_cov_16.086486_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00039 len=43526 cov=17.1 corr=1 origname=NODE_39_length_43526_cov_17.144745_pilon sw=shovill-spades/1.1.0 date=20231107	34453..34581	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00106 len=2769 cov=36.3 corr=0 origname=NODE_106_length_2769_cov_36.315907_pilon sw=shovill-spades/1.1.0 date=20231107	336..466	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00069 len=11025 cov=15.1 corr=0 origname=NODE_69_length_11025_cov_15.123194_pilon sw=shovill-spades/1.1.0 date=20231107	5957..6638	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00064 len=13383 cov=23.1 corr=0 origname=NODE_64_length_13383_cov_23.137752_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128673	Escherichia_coli	408911360	741	0.5023	142.106 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_92.0142_Circ,	92	5471572	4444032	2828472	93.115	123.121	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00079 len=5108 cov=41.3 corr=0 origname=NODE_79_length_5108_cov_41.336655_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314506 cov=29.3 corr=0 origname=NODE_2_length_314506_cov_29.288495_pilon sw=shovill-spades/1.1.0 date=20231107	113572..115554	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=146726 cov=24.2 corr=0 origname=NODE_11_length_146726_cov_24.204862_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	100	2997 / 2997	contig00042 len=31677 cov=16.7 corr=0 origname=NODE_42_length_31677_cov_16.737700_pilon sw=shovill-spades/1.1.0 date=20231107	17505..20501	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=146726 cov=24.2 corr=0 origname=NODE_11_length_146726_cov_24.204862_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=146726 cov=24.2 corr=0 origname=NODE_11_length_146726_cov_24.204862_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=56948 cov=22.1 corr=0 origname=NODE_30_length_56948_cov_22.071952_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00059 len=11488 cov=10.7 corr=0 origname=NODE_59_length_11488_cov_10.700535_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444369 cov=25.5 corr=0 origname=NODE_1_length_444369_cov_25.506993_pilon sw=shovill-spades/1.1.0 date=20231107	145807..146376			etpD	100	1758 / 1758	contig00042 len=31677 cov=16.7 corr=0 origname=NODE_42_length_31677_cov_16.737700_pilon sw=shovill-spades/1.1.0 date=20231107	4568..6325	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444369 cov=25.5 corr=0 origname=NODE_1_length_444369_cov_25.506993_pilon sw=shovill-spades/1.1.0 date=20231107	321211..321699	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314506 cov=29.3 corr=0 origname=NODE_2_length_314506_cov_29.288495_pilon sw=shovill-spades/1.1.0 date=20231107	95302..96702	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21369 cov=31.7 corr=0 origname=NODE_50_length_21369_cov_31.699220_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00036 len=43526 cov=17.5 corr=0 origname=NODE_36_length_43526_cov_17.514792_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00055 len=14610 cov=53.2 corr=0 origname=NODE_55_length_14610_cov_53.196914_pilon sw=shovill-spades/1.1.0 date=20231107	11736..12029	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00072 len=7178 cov=46.4 corr=0 origname=NODE_72_length_7178_cov_46.392550_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00021 len=78937 cov=32.1 corr=0 origname=NODE_21_length_78937_cov_32.071659_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00021 len=78937 cov=32.1 corr=0 origname=NODE_21_length_78937_cov_32.071659_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00056 len=13383 cov=16.0 corr=0 origname=NODE_56_length_13383_cov_16.004288_pilon sw=shovill-spades/1.1.0 date=20231107	10594..12804	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00079 len=5108 cov=41.3 corr=0 origname=NODE_79_length_5108_cov_41.336655_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=22.4 corr=0 origname=NODE_3_length_244736_cov_22.363212_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00053 len=15109 cov=24.6 corr=0 origname=NODE_53_length_15109_cov_24.592289_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=22.4 corr=0 origname=NODE_3_length_244736_cov_22.363212_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124411 cov=24.1 corr=0 origname=NODE_16_length_124411_cov_24.142664_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21369 cov=31.7 corr=0 origname=NODE_50_length_21369_cov_31.699220_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00114 len=2457 cov=40.8 corr=0 origname=NODE_114_length_2457_cov_40.828825_pilon sw=shovill-spades/1.1.0 date=20231107	922..2148	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00092 len=3959 cov=31.8 corr=0 origname=NODE_92_length_3959_cov_31.756980_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00036 len=43526 cov=17.5 corr=0 origname=NODE_36_length_43526_cov_17.514792_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00039 len=40538 cov=26.7 corr=0 origname=NODE_39_length_40538_cov_26.696615_pilon sw=shovill-spades/1.1.0 date=20231107	17000..17713	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00008 len=160611 cov=27.0 corr=0 origname=NODE_8_length_160611_cov_26.994113_pilon sw=shovill-spades/1.1.0 date=20231107	105640..106603	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=146726 cov=24.2 corr=0 origname=NODE_11_length_146726_cov_24.204862_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00127 len=1756 cov=18.5 corr=0 origname=NODE_127_length_1756_cov_18.502102_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00036 len=43526 cov=17.5 corr=0 origname=NODE_36_length_43526_cov_17.514792_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00104 len=2769 cov=43.3 corr=0 origname=NODE_104_length_2769_cov_43.292009_pilon sw=shovill-spades/1.1.0 date=20231107	2186..2316	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31677 cov=16.7 corr=0 origname=NODE_42_length_31677_cov_16.737700_pilon sw=shovill-spades/1.1.0 date=20231107	26609..27290	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00056 len=13383 cov=16.0 corr=0 origname=NODE_56_length_13383_cov_16.004288_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128674	Escherichia_coli	470987660	734	0.5024	139.633 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_132.656_Circ,,Contig_2_70.3247_Circ,	104	5469039	4503804	3255496	105.769	121.431	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00080 len=5108 cov=55.7 corr=0 origname=NODE_80_length_5108_cov_55.694240_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=217902 cov=31.8 corr=0 origname=NODE_3_length_217902_cov_31.838360_pilon sw=shovill-spades/1.1.0 date=20231107	198829..200811	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00014 len=139633 cov=27.3 corr=0 origname=NODE_14_length_139633_cov_27.292242_pilon sw=shovill-spades/1.1.0 date=20231107	135817..138621		44	ehxA	100	2997 / 2997	contig00042 len=31680 cov=14.7 corr=0 origname=NODE_42_length_31680_cov_14.698154_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00073 len=7006 cov=26.1 corr=0 origname=NODE_73_length_7006_cov_26.057411_pilon sw=shovill-spades/1.1.0 date=20231107	4659..5237	Type III secretions system	AE005174	espB	100	939 / 939	contig00073 len=7006 cov=26.1 corr=0 origname=NODE_73_length_7006_cov_26.057411_pilon sw=shovill-spades/1.1.0 date=20231107	2563..3501	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=56948 cov=25.4 corr=0 origname=NODE_30_length_56948_cov_25.361134_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00072 len=7107 cov=9.2 corr=0 origname=NODE_72_length_7107_cov_9.154076_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=445141 cov=29.6 corr=0 origname=NODE_1_length_445141_cov_29.649806_pilon sw=shovill-spades/1.1.0 date=20231107	297710..298279			etpD	100	1758 / 1758	contig00042 len=31680 cov=14.7 corr=0 origname=NODE_42_length_31680_cov_14.698154_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=445141 cov=29.6 corr=0 origname=NODE_1_length_445141_cov_29.649806_pilon sw=shovill-spades/1.1.0 date=20231107	122488..122976	Type 1 fimbriae		gad	99.76	1270 / 1401	contig00018 len=96426 cov=33.8 corr=0 origname=NODE_18_length_96426_cov_33.752406_pilon sw=shovill-spades/1.1.0 date=20231107	1..1270	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=34.9 corr=0 origname=NODE_49_length_21369_cov_34.850738_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00037 len=43526 cov=21.6 corr=0 origname=NODE_37_length_43526_cov_21.567423_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00056 len=14209 cov=68.8 corr=0 origname=NODE_56_length_14209_cov_68.788851_pilon sw=shovill-spades/1.1.0 date=20231107	2579..2872	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00060 len=11849 cov=41.8 corr=0 origname=NODE_60_length_11849_cov_41.818677_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00022 len=78937 cov=38.6 corr=0 origname=NODE_22_length_78937_cov_38.629924_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00022 len=78937 cov=38.6 corr=0 origname=NODE_22_length_78937_cov_38.629924_pilon sw=shovill-spades/1.1.0 date=20231107	748..1041	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00097 len=3599 cov=13.3 corr=0 origname=NODE_97_length_3599_cov_13.329247_pilon sw=shovill-spades/1.1.0 date=20231107	810..3020	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00080 len=5108 cov=55.7 corr=0 origname=NODE_80_length_5108_cov_55.694240_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244737 cov=25.4 corr=1 origname=NODE_2_length_244737_cov_25.410074_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00055 len=15109 cov=31.0 corr=0 origname=NODE_55_length_15109_cov_30.950926_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244737 cov=25.4 corr=1 origname=NODE_2_length_244737_cov_25.410074_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124411 cov=27.4 corr=0 origname=NODE_16_length_124411_cov_27.424767_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=34.9 corr=0 origname=NODE_49_length_21369_cov_34.850738_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00112 len=2397 cov=37.6 corr=0 origname=NODE_112_length_2397_cov_37.640503_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00093 len=3959 cov=43.4 corr=0 origname=NODE_93_length_3959_cov_43.361944_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00037 len=43526 cov=21.6 corr=0 origname=NODE_37_length_43526_cov_21.567423_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183801 cov=27.4 corr=0 origname=NODE_6_length_183801_cov_27.387355_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160145 cov=30.5 corr=4 origname=NODE_9_length_160145_cov_30.516444_pilon sw=shovill-spades/1.1.0 date=20231107	105174..106137	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00014 len=139633 cov=27.3 corr=0 origname=NODE_14_length_139633_cov_27.292242_pilon sw=shovill-spades/1.1.0 date=20231107	133455..135149	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00130 len=1756 cov=27.0 corr=0 origname=NODE_130_length_1756_cov_27.049850_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00037 len=43526 cov=21.6 corr=0 origname=NODE_37_length_43526_cov_21.567423_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00104 len=2769 cov=62.5 corr=0 origname=NODE_104_length_2769_cov_62.477595_pilon sw=shovill-spades/1.1.0 date=20231107	2313..2443	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00042 len=31680 cov=14.7 corr=0 origname=NODE_42_length_31680_cov_14.698154_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=10340 cov=16.3 corr=0 origname=NODE_62_length_10340_cov_16.282467_pilon sw=shovill-spades/1.1.0 date=20231107	4077..4335	AY458016																					
SAM128675	Escherichia_coli	304460442	719	0.5024	92.295 KB	19	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_67.5217_Circ,	84	5454257	3593408	2106240	85.76	151.785	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00097 len=5108 cov=22.2 corr=0 origname=NODE_97_length_5108_cov_22.239785_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00045 len=37863 cov=16.3 corr=1 origname=NODE_45_length_37863_cov_16.259213_pilon sw=shovill-spades/1.1.0 date=20231107	18866..20848	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00006 len=146396 cov=19.6 corr=0 origname=NODE_6_length_146396_cov_19.648221_pilon sw=shovill-spades/1.1.0 date=20231107	135755..138559		44	ehxA	100	2997 / 2997	contig00048 len=31682 cov=14.8 corr=1 origname=NODE_48_length_31682_cov_14.794625_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00006 len=146396 cov=19.6 corr=0 origname=NODE_6_length_146396_cov_19.648221_pilon sw=shovill-spades/1.1.0 date=20231107	141300..141878	Type III secretions system	AE005174	espB	99.89	939 / 939	contig00006 len=146396 cov=19.6 corr=0 origname=NODE_6_length_146396_cov_19.648221_pilon sw=shovill-spades/1.1.0 date=20231107	143036..143974	Secreted protein B	AE005174	espJ	100	654 / 654	contig00105 len=4205 cov=11.6 corr=0 origname=NODE_105_length_4205_cov_11.593826_pilon sw=shovill-spades/1.1.0 date=20231107	2843..3496	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00074 len=11488 cov=10.8 corr=1 origname=NODE_74_length_11488_cov_10.821093_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444577 cov=19.3 corr=0 origname=NODE_1_length_444577_cov_19.287057_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00048 len=31682 cov=14.8 corr=1 origname=NODE_48_length_31682_cov_14.794625_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444577 cov=19.3 corr=0 origname=NODE_1_length_444577_cov_19.287057_pilon sw=shovill-spades/1.1.0 date=20231107	322166..322654	Type 1 fimbriae		hlyE	98.47	918 / 918	contig00062 len=21472 cov=16.4 corr=0 origname=NODE_62_length_21472_cov_16.392638_pilon sw=shovill-spades/1.1.0 date=20231107	10060..10977	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00041 len=43526 cov=14.8 corr=2 origname=NODE_41_length_43526_cov_14.773984_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.53	272 / 294	contig00065 len=18380 cov=40.8 corr=0 origname=NODE_65_length_18380_cov_40.801629_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00120 len=3418 cov=24.4 corr=0 origname=NODE_120_length_3418_cov_24.351969_pilon sw=shovill-spades/1.1.0 date=20231107	3147..3418	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=24.9 corr=0 origname=NODE_23_length_78936_cov_24.887374_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=24.9 corr=0 origname=NODE_23_length_78936_cov_24.887374_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00113 len=3723 cov=7.4 corr=0 origname=NODE_113_length_3723_cov_7.445485_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00097 len=5108 cov=22.2 corr=0 origname=NODE_97_length_5108_cov_22.239785_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00027 len=70857 cov=20.4 corr=0 origname=NODE_27_length_70857_cov_20.375251_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00071 len=15109 cov=17.7 corr=1 origname=NODE_71_length_15109_cov_17.728792_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00027 len=70857 cov=20.4 corr=0 origname=NODE_27_length_70857_cov_20.375251_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00010 len=124411 cov=18.0 corr=1 origname=NODE_10_length_124411_cov_18.041208_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00062 len=21472 cov=16.4 corr=0 origname=NODE_62_length_21472_cov_16.392638_pilon sw=shovill-spades/1.1.0 date=20231107	18495..19448	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00134 len=2457 cov=22.6 corr=0 origname=NODE_134_length_2457_cov_22.603973_pilon sw=shovill-spades/1.1.0 date=20231107	922..2148	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00110 len=3959 cov=24.8 corr=0 origname=NODE_110_length_3959_cov_24.835832_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00041 len=43526 cov=14.8 corr=2 origname=NODE_41_length_43526_cov_14.773984_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00034 len=48969 cov=18.5 corr=0 origname=NODE_34_length_48969_cov_18.524490_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00030 len=59921 cov=19.0 corr=0 origname=NODE_30_length_59921_cov_18.989153_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00006 len=146396 cov=19.6 corr=0 origname=NODE_6_length_146396_cov_19.648221_pilon sw=shovill-spades/1.1.0 date=20231107	133393..135087	Translocated intimin receptor protein	EU871626	toxB	99.87	7980 / 9510	contig00077 len=8917 cov=6.8 corr=0 origname=NODE_77_length_8917_cov_6.826649_pilon sw=shovill-spades/1.1.0 date=20231107	2..7981	Toxin B	AB011549	traT	100	423 / 423	contig00153 len=1756 cov=15.4 corr=0 origname=NODE_153_length_1756_cov_15.388589_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00041 len=43526 cov=14.8 corr=2 origname=NODE_41_length_43526_cov_14.773984_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00128 len=2769 cov=30.8 corr=0 origname=NODE_128_length_2769_cov_30.775952_pilon sw=shovill-spades/1.1.0 date=20231107	641..771	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00048 len=31682 cov=14.8 corr=1 origname=NODE_48_length_31682_cov_14.794625_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00075 len=10340 cov=17.5 corr=0 origname=NODE_75_length_10340_cov_17.531271_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128676	Escherichia_coli	258531130	732	0.5031	76.507 KB	20	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	23	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espY2:000868321,etpD,fimH,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		78	5483575	3287897	1785764	79.456	166.78	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00102 len=8084 cov=37.8 corr=0 origname=NODE_102_length_8084_cov_37.840736_pilon sw=shovill-spades/1.1.0 date=20231107	7486..7582	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00010 len=119607 cov=17.7 corr=1 origname=NODE_10_length_119607_cov_17.666756_pilon sw=shovill-spades/1.1.0 date=20231107	17410..19392	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00006 len=145663 cov=14.7 corr=0 origname=NODE_6_length_145663_cov_14.747149_pilon sw=shovill-spades/1.1.0 date=20231107	135946..138750		44	ehxA	99.96	2787 / 2997	contig00142 len=3851 cov=5.7 corr=0 origname=NODE_142_length_3851_cov_5.707181_pilon sw=shovill-spades/1.1.0 date=20231107	1..2787	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00006 len=145663 cov=14.7 corr=0 origname=NODE_6_length_145663_cov_14.747149_pilon sw=shovill-spades/1.1.0 date=20231107	141491..142069	Type III secretions system	AE005174	espB	99.89	939 / 939	contig00006 len=145663 cov=14.7 corr=0 origname=NODE_6_length_145663_cov_14.747149_pilon sw=shovill-spades/1.1.0 date=20231107	143227..144165	Secreted protein B	AE005174	espJ	100	654 / 654	contig00029 len=54919 cov=15.5 corr=0 origname=NODE_29_length_54919_cov_15.479518_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espY2:000868321	100	570 / 570	contig00001 len=375403 cov=16.0 corr=0 origname=NODE_1_length_375403_cov_16.034057_pilon sw=shovill-spades/1.1.0 date=20231107	145806..146375			etpD	99.94	1758 / 1758	contig00077 len=13340 cov=9.3 corr=3 origname=NODE_77_length_13340_cov_9.306589_pilon sw=shovill-spades/1.1.0 date=20231107	9762..11519	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=375403 cov=16.0 corr=0 origname=NODE_1_length_375403_cov_16.034057_pilon sw=shovill-spades/1.1.0 date=20231107	321017..321505	Type 1 fimbriae		hlyE	98.47	918 / 918	contig00064 len=17291 cov=14.7 corr=0 origname=NODE_64_length_17291_cov_14.740407_pilon sw=shovill-spades/1.1.0 date=20231107	9958..10875	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00071 len=15067 cov=14.7 corr=0 origname=NODE_71_length_15067_cov_14.704460_pilon sw=shovill-spades/1.1.0 date=20231107	11529..13619	Adherence protein	AE005174	iss	97.96	294 / 294	contig00002 len=265787 cov=19.2 corr=1 origname=NODE_2_length_265787_cov_19.157605_pilon sw=shovill-spades/1.1.0 date=20231107	2636..2929	Increased serum survival	CP001509	iss	96.95	262 / 294	contig00259 len=590 cov=15.9 corr=0 origname=NODE_262_length_590_cov_15.877756_pilon sw=shovill-spades/1.1.0 date=20231107	2..263	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00032 len=48804 cov=14.9 corr=0 origname=NODE_32_length_48804_cov_14.890419_pilon sw=shovill-spades/1.1.0 date=20231107	3766..4059	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00032 len=48804 cov=14.9 corr=0 origname=NODE_32_length_48804_cov_14.890419_pilon sw=shovill-spades/1.1.0 date=20231107	3766..4059	Increased serum survival	CP001846	katP	100	2184 / 2211	contig00161 len=2767 cov=4.9 corr=1 origname=NODE_161_length_2767_cov_4.949552_pilon sw=shovill-spades/1.1.0 date=20231107	580..2763	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00102 len=8084 cov=37.8 corr=0 origname=NODE_102_length_8084_cov_37.840736_pilon sw=shovill-spades/1.1.0 date=20231107	2368..3693	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00056 len=21809 cov=25.7 corr=0 origname=NODE_56_length_21809_cov_25.679252_pilon sw=shovill-spades/1.1.0 date=20231107	14224..15204	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00070 len=15069 cov=15.6 corr=0 origname=NODE_70_length_15069_cov_15.552410_pilon sw=shovill-spades/1.1.0 date=20231107	4820..5809	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00056 len=21809 cov=25.7 corr=0 origname=NODE_56_length_21809_cov_25.679252_pilon sw=shovill-spades/1.1.0 date=20231107	13171..14163	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00072 len=14891 cov=18.4 corr=0 origname=NODE_72_length_14891_cov_18.382838_pilon sw=shovill-spades/1.1.0 date=20231107	479..1465	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00008 len=123861 cov=14.2 corr=2 origname=NODE_8_length_123861_cov_14.234152_pilon sw=shovill-spades/1.1.0 date=20231107	106852..107736	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00129 len=4270 cov=23.6 corr=0 origname=NODE_129_length_4270_cov_23.644652_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00060 len=21462 cov=18.6 corr=0 origname=NODE_60_length_21462_cov_18.599317_pilon sw=shovill-spades/1.1.0 date=20231107	1354..2580	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00075 len=13950 cov=9.5 corr=1 origname=NODE_75_length_13950_cov_9.466845_pilon sw=shovill-spades/1.1.0 date=20231107	12201..13241	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00033 len=47966 cov=15.6 corr=1 origname=NODE_33_length_47966_cov_15.575791_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00103 len=7743 cov=16.1 corr=0 origname=NODE_103_length_7743_cov_16.127548_pilon sw=shovill-spades/1.1.0 date=20231107	1804..2767	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00006 len=145663 cov=14.7 corr=0 origname=NODE_6_length_145663_cov_14.747149_pilon sw=shovill-spades/1.1.0 date=20231107	133602..135278	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00006 len=145663 cov=14.7 corr=0 origname=NODE_6_length_145663_cov_14.747149_pilon sw=shovill-spades/1.1.0 date=20231107	133602..135278	Translocated intimin receptor protein	AF125993	traT	100	423 / 423	contig00096 len=9159 cov=11.0 corr=0 origname=NODE_96_length_9159_cov_11.015549_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00094 len=9464 cov=11.4 corr=3 origname=NODE_94_length_9464_cov_11.358476_pilon sw=shovill-spades/1.1.0 date=20231107	7279..7407	Outer membrane protein complement resistance	AMTE01000156																																																									aph(6)-Id	100	837/837	contig00120 len=5154 cov=12.4 corr=0 origname=NODE_120_length_5154_cov_12.359471_pilon sw=shovill-spades/1.1.0 date=20231107	3219..4055	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00120 len=5154 cov=12.4 corr=0 origname=NODE_120_length_5154_cov_12.359471_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4857	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00120 len=5154 cov=12.4 corr=0 origname=NODE_120_length_5154_cov_12.359471_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00120 len=5154 cov=12.4 corr=0 origname=NODE_120_length_5154_cov_12.359471_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00120 len=5154 cov=12.4 corr=0 origname=NODE_120_length_5154_cov_12.359471_pilon sw=shovill-spades/1.1.0 date=20231107	4055..4858	Streptomycin	AF321550	sul2	100	816/816	contig00120 len=5154 cov=12.4 corr=0 origname=NODE_120_length_5154_cov_12.359471_pilon sw=shovill-spades/1.1.0 date=20231107	1631..2446	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00113 len=6731 cov=7.9 corr=1 origname=NODE_113_length_6731_cov_7.921988_pilon sw=shovill-spades/1.1.0 date=20231107	1328..2533	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00133 len=4129 cov=6.7 corr=0 origname=NODE_133_length_4129_cov_6.685488_pilon sw=shovill-spades/1.1.0 date=20231107	1886..2567	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00100 len=8490 cov=6.5 corr=3 origname=NODE_100_length_8490_cov_6.544351_pilon sw=shovill-spades/1.1.0 date=20231107	6049..6307	AY458016																												
SAM128677	Escherichia_coli	467464140	754	0.5023	109.314 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_194.012_Circ,	104	5480966	4452626	3220182	105.768	123.095	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00075 len=6979 cov=77.6 corr=0 origname=NODE_75_length_6979_cov_77.611643_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=217817 cov=29.2 corr=0 origname=NODE_3_length_217817_cov_29.193390_pilon sw=shovill-spades/1.1.0 date=20231107	17016..18998	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00009 len=146726 cov=29.9 corr=0 origname=NODE_9_length_146726_cov_29.911488_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00047 len=31681 cov=71.5 corr=0 origname=NODE_47_length_31681_cov_71.479456_pilon sw=shovill-spades/1.1.0 date=20231107	17509..20505	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00009 len=146726 cov=29.9 corr=0 origname=NODE_9_length_146726_cov_29.911488_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00009 len=146726 cov=29.9 corr=0 origname=NODE_9_length_146726_cov_29.911488_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=56948 cov=24.5 corr=0 origname=NODE_31_length_56948_cov_24.527305_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00066 len=11488 cov=46.4 corr=0 origname=NODE_66_length_11488_cov_46.350180_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=445425 cov=29.6 corr=0 origname=NODE_1_length_445425_cov_29.559623_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00047 len=31681 cov=71.5 corr=0 origname=NODE_47_length_31681_cov_71.479456_pilon sw=shovill-spades/1.1.0 date=20231107	4572..6329	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=445425 cov=29.6 corr=0 origname=NODE_1_length_445425_cov_29.559623_pilon sw=shovill-spades/1.1.0 date=20231107	322267..322755	Type 1 fimbriae		hlyE	98.47	918 / 918	contig00056 len=21369 cov=37.5 corr=0 origname=NODE_56_length_21369_cov_37.496334_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00041 len=43526 cov=22.5 corr=0 origname=NODE_41_length_43526_cov_22.511039_pilon sw=shovill-spades/1.1.0 date=20231107	10161..12251	Adherence protein	AE005174	iss	98.3	294 / 294	contig00046 len=33152 cov=40.5 corr=0 origname=NODE_46_length_33152_cov_40.498382_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00060 len=14532 cov=56.3 corr=0 origname=NODE_60_length_14532_cov_56.258085_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=34.1 corr=0 origname=NODE_23_length_78936_cov_34.077468_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=34.1 corr=0 origname=NODE_23_length_78936_cov_34.077468_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00061 len=13383 cov=61.4 corr=0 origname=NODE_61_length_13383_cov_61.383163_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00075 len=6979 cov=77.6 corr=0 origname=NODE_75_length_6979_cov_77.611643_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=24.7 corr=0 origname=NODE_2_length_244736_cov_24.715424_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00059 len=15089 cov=33.1 corr=0 origname=NODE_59_length_15089_cov_33.114349_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=24.7 corr=0 origname=NODE_2_length_244736_cov_24.715424_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00013 len=124411 cov=27.4 corr=0 origname=NODE_13_length_124411_cov_27.385216_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00056 len=21369 cov=37.5 corr=0 origname=NODE_56_length_21369_cov_37.496334_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00088 len=3718 cov=50.7 corr=0 origname=NODE_88_length_3718_cov_50.696168_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00087 len=3959 cov=46.6 corr=0 origname=NODE_87_length_3959_cov_46.614271_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00041 len=43526 cov=22.5 corr=0 origname=NODE_41_length_43526_cov_22.511039_pilon sw=shovill-spades/1.1.0 date=20231107	14846..15886	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00005 len=184970 cov=28.2 corr=0 origname=NODE_5_length_184970_cov_28.193797_pilon sw=shovill-spades/1.1.0 date=20231107	22936..23649	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59953 cov=27.8 corr=0 origname=NODE_29_length_59953_cov_27.840567_pilon sw=shovill-spades/1.1.0 date=20231107	4982..5945	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00009 len=146726 cov=29.9 corr=0 origname=NODE_9_length_146726_cov_29.911488_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00055 len=22666 cov=50.9 corr=0 origname=NODE_55_length_22666_cov_50.886556_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00092 len=3036 cov=26.9 corr=0 origname=NODE_92_length_3036_cov_26.906621_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00041 len=43526 cov=22.5 corr=0 origname=NODE_41_length_43526_cov_22.511039_pilon sw=shovill-spades/1.1.0 date=20231107	34453..34581	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=90.7 corr=0 origname=NODE_94_length_2769_cov_90.662061_pilon sw=shovill-spades/1.1.0 date=20231107	2295..2425	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00047 len=31681 cov=71.5 corr=0 origname=NODE_47_length_31681_cov_71.479456_pilon sw=shovill-spades/1.1.0 date=20231107	26613..27294	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=13383 cov=61.4 corr=0 origname=NODE_61_length_13383_cov_61.383163_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128678	Escherichia_coli	657919834	718	0.5023	128.046 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_198.408_Circ,	131	5481247	4985922	4546980	133.409	109.934	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00066 len=7013 cov=99.6 corr=0 origname=NODE_66_length_7013_cov_99.647790_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=45.7 corr=0 origname=NODE_2_length_314496_cov_45.727129_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145661 cov=40.5 corr=0 origname=NODE_12_length_145661_cov_40.467809_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00043 len=31679 cov=86.2 corr=0 origname=NODE_43_length_31679_cov_86.163670_pilon sw=shovill-spades/1.1.0 date=20231107	17507..20503	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145661 cov=40.5 corr=0 origname=NODE_12_length_145661_cov_40.467809_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145661 cov=40.5 corr=0 origname=NODE_12_length_145661_cov_40.467809_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=57145 cov=36.2 corr=0 origname=NODE_31_length_57145_cov_36.217022_pilon sw=shovill-spades/1.1.0 date=20231107	907..1560	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00058 len=11488 cov=58.0 corr=0 origname=NODE_58_length_11488_cov_57.970870_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=445228 cov=42.8 corr=0 origname=NODE_1_length_445228_cov_42.781350_pilon sw=shovill-spades/1.1.0 date=20231107	297797..298366			etpD	100	1758 / 1758	contig00043 len=31679 cov=86.2 corr=0 origname=NODE_43_length_31679_cov_86.163670_pilon sw=shovill-spades/1.1.0 date=20231107	4570..6327	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=445228 cov=42.8 corr=0 origname=NODE_1_length_445228_cov_42.781350_pilon sw=shovill-spades/1.1.0 date=20231107	122575..123063	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=45.7 corr=0 origname=NODE_2_length_314496_cov_45.727129_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=59.0 corr=0 origname=NODE_49_length_21369_cov_58.966679_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=30.9 corr=0 origname=NODE_33_length_51407_cov_30.918992_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00042 len=33152 cov=50.4 corr=0 origname=NODE_42_length_33152_cov_50.431324_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00053 len=14532 cov=65.8 corr=0 origname=NODE_53_length_14532_cov_65.805554_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=47.9 corr=0 origname=NODE_23_length_78936_cov_47.864151_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=47.9 corr=0 origname=NODE_23_length_78936_cov_47.864151_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00055 len=13383 cov=80.5 corr=0 origname=NODE_55_length_13383_cov_80.467875_pilon sw=shovill-spades/1.1.0 date=20231107	10594..12804	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00066 len=7013 cov=99.6 corr=0 origname=NODE_66_length_7013_cov_99.647790_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=35.8 corr=0 origname=NODE_3_length_244736_cov_35.811400_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00052 len=15109 cov=34.4 corr=0 origname=NODE_52_length_15109_cov_34.356306_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=35.8 corr=0 origname=NODE_3_length_244736_cov_35.811400_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=41.3 corr=0 origname=NODE_15_length_124410_cov_41.326804_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=59.0 corr=0 origname=NODE_49_length_21369_cov_58.966679_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00086 len=3446 cov=57.8 corr=0 origname=NODE_86_length_3446_cov_57.830999_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00077 len=4530 cov=67.8 corr=0 origname=NODE_77_length_4530_cov_67.770669_pilon sw=shovill-spades/1.1.0 date=20231107	1961..3201	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=30.9 corr=0 origname=NODE_33_length_51407_cov_30.918992_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183917 cov=38.6 corr=0 origname=NODE_7_length_183917_cov_38.567618_pilon sw=shovill-spades/1.1.0 date=20231107	160269..160982	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59923 cov=44.3 corr=0 origname=NODE_28_length_59923_cov_44.300525_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=145661 cov=40.5 corr=0 origname=NODE_12_length_145661_cov_40.467809_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00048 len=22666 cov=56.4 corr=0 origname=NODE_48_length_22666_cov_56.439424_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00089 len=3036 cov=31.7 corr=0 origname=NODE_89_length_3036_cov_31.674024_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=30.9 corr=0 origname=NODE_33_length_51407_cov_30.918992_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00092 len=2769 cov=93.0 corr=0 origname=NODE_92_length_2769_cov_92.953323_pilon sw=shovill-spades/1.1.0 date=20231107	8..138	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31679 cov=86.2 corr=0 origname=NODE_43_length_31679_cov_86.163670_pilon sw=shovill-spades/1.1.0 date=20231107	26611..27292	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00055 len=13383 cov=80.5 corr=0 origname=NODE_55_length_13383_cov_80.467875_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016																					
SAM128679	Escherichia_coli	620736974	777	0.5023	126.896 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_116.096_Circ,	127	5491001	4874217	4293326	128.883	112.654	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5108 cov=43.2 corr=0 origname=NODE_76_length_5108_cov_43.212876_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=46.5 corr=0 origname=NODE_2_length_314496_cov_46.542386_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=146726 cov=39.0 corr=0 origname=NODE_10_length_146726_cov_38.963460_pilon sw=shovill-spades/1.1.0 date=20231107	7979..10783		44	ehxA	100	2997 / 2997	contig00043 len=31677 cov=32.1 corr=0 origname=NODE_43_length_31677_cov_32.087887_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=146726 cov=39.0 corr=0 origname=NODE_10_length_146726_cov_38.963460_pilon sw=shovill-spades/1.1.0 date=20231107	4660..5238	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=146726 cov=39.0 corr=0 origname=NODE_10_length_146726_cov_38.963460_pilon sw=shovill-spades/1.1.0 date=20231107	2564..3502	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=57005 cov=32.5 corr=0 origname=NODE_30_length_57005_cov_32.535738_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00062 len=11488 cov=25.2 corr=0 origname=NODE_62_length_11488_cov_25.181714_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444771 cov=41.5 corr=0 origname=NODE_1_length_444771_cov_41.532480_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00043 len=31677 cov=32.1 corr=0 origname=NODE_43_length_31677_cov_32.087887_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444771 cov=41.5 corr=0 origname=NODE_1_length_444771_cov_41.532480_pilon sw=shovill-spades/1.1.0 date=20231107	322166..322654	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=46.5 corr=0 origname=NODE_2_length_314496_cov_46.542386_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21369 cov=42.3 corr=0 origname=NODE_50_length_21369_cov_42.302002_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00036 len=43526 cov=26.8 corr=0 origname=NODE_36_length_43526_cov_26.836054_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00042 len=33152 cov=46.2 corr=0 origname=NODE_42_length_33152_cov_46.221802_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00059 len=14693 cov=70.2 corr=0 origname=NODE_59_length_14693_cov_70.214491_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=46.8 corr=0 origname=NODE_24_length_78936_cov_46.753795_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=46.8 corr=0 origname=NODE_24_length_78936_cov_46.753795_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00060 len=13383 cov=33.7 corr=0 origname=NODE_60_length_13383_cov_33.722465_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5108 cov=43.2 corr=0 origname=NODE_76_length_5108_cov_43.212876_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=244736 cov=35.3 corr=3 origname=NODE_3_length_244736_cov_35.287233_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00057 len=15109 cov=34.4 corr=0 origname=NODE_57_length_15109_cov_34.427487_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=244736 cov=35.3 corr=3 origname=NODE_3_length_244736_cov_35.287233_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124411 cov=40.0 corr=0 origname=NODE_15_length_124411_cov_39.983575_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21369 cov=42.3 corr=0 origname=NODE_50_length_21369_cov_42.302002_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00103 len=2397 cov=39.3 corr=0 origname=NODE_103_length_2397_cov_39.285776_pilon sw=shovill-spades/1.1.0 date=20231107	310..1536	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=52.8 corr=0 origname=NODE_83_length_3959_cov_52.776370_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00036 len=43526 cov=26.8 corr=0 origname=NODE_36_length_43526_cov_26.836054_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00019 len=100556 cov=36.5 corr=0 origname=NODE_19_length_100556_cov_36.547554_pilon sw=shovill-spades/1.1.0 date=20231107	77015..77728	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00008 len=160440 cov=43.5 corr=0 origname=NODE_8_length_160440_cov_43.491478_pilon sw=shovill-spades/1.1.0 date=20231107	105469..106432	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=146726 cov=39.0 corr=0 origname=NODE_10_length_146726_cov_38.963460_pilon sw=shovill-spades/1.1.0 date=20231107	11451..13145	Translocated intimin receptor protein	EU871626	toxB	99.91	7930 / 9510	contig00052 len=17180 cov=21.6 corr=0 origname=NODE_52_length_17180_cov_21.576277_pilon sw=shovill-spades/1.1.0 date=20231107	9237..17165	Toxin B	AB011549	traT	100	423 / 423	contig00093 len=2786 cov=26.5 corr=0 origname=NODE_93_length_2786_cov_26.512430_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00036 len=43526 cov=26.8 corr=0 origname=NODE_36_length_43526_cov_26.836054_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2769 cov=54.3 corr=0 origname=NODE_95_length_2769_cov_54.339806_pilon sw=shovill-spades/1.1.0 date=20231107	692..822	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31677 cov=32.1 corr=0 origname=NODE_43_length_31677_cov_32.087887_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00060 len=13383 cov=33.7 corr=0 origname=NODE_60_length_13383_cov_33.722465_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128680	Escherichia_coli	414101688	747	0.5028	92.295 KB	17	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	0		97	5448784	4249177	2863696	98.576	128.231	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00092 len=5108 cov=27.3 corr=0 origname=NODE_92_length_5108_cov_27.286625_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=31.7 corr=0 origname=NODE_1_length_314655_cov_31.689767_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00052 len=29089 cov=16.5 corr=0 origname=NODE_52_length_29089_cov_16.506587_pilon sw=shovill-spades/1.1.0 date=20231107	18449..21253		44	ehxA	100	2997 / 2997	contig00057 len=22692 cov=16.0 corr=0 origname=NODE_57_length_22692_cov_16.033760_pilon sw=shovill-spades/1.1.0 date=20231107	17492..20488	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00052 len=29089 cov=16.5 corr=0 origname=NODE_52_length_29089_cov_16.506587_pilon sw=shovill-spades/1.1.0 date=20231107	23994..24572	Type III secretions system	AE005174	espB	100	939 / 939	contig00052 len=29089 cov=16.5 corr=0 origname=NODE_52_length_29089_cov_16.506587_pilon sw=shovill-spades/1.1.0 date=20231107	25730..26668	Secreted protein B	AE005174	espJ	100	654 / 654	contig00047 len=33840 cov=23.2 corr=0 origname=NODE_47_length_33840_cov_23.152123_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.9	3127 / 3903	contig00072 len=10485 cov=8.8 corr=2 origname=NODE_72_length_10485_cov_8.808832_pilon sw=shovill-spades/1.1.0 date=20231107	7357..10483	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=29.5 corr=0 origname=NODE_3_length_227891_cov_29.520812_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00057 len=22692 cov=16.0 corr=0 origname=NODE_57_length_22692_cov_16.033760_pilon sw=shovill-spades/1.1.0 date=20231107	4555..6312	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00005 len=216875 cov=25.1 corr=0 origname=NODE_5_length_216875_cov_25.118482_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	99.64	1401 / 1401	contig00001 len=314655 cov=31.7 corr=0 origname=NODE_1_length_314655_cov_31.689767_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00060 len=21369 cov=27.7 corr=0 origname=NODE_60_length_21369_cov_27.736958_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00040 len=43380 cov=16.9 corr=0 origname=NODE_40_length_43380_cov_16.906651_pilon sw=shovill-spades/1.1.0 date=20231107	10161..12251	Adherence protein	AE005174	iss	98.3	294 / 294	contig00059 len=21503 cov=48.3 corr=0 origname=NODE_59_length_21503_cov_48.276480_pilon sw=shovill-spades/1.1.0 date=20231107	18109..18402	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00085 len=7178 cov=33.0 corr=0 origname=NODE_85_length_7178_cov_33.028362_pilon sw=shovill-spades/1.1.0 date=20231107	2893..3186	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00019 len=78936 cov=31.3 corr=0 origname=NODE_19_length_78936_cov_31.250910_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00019 len=78936 cov=31.3 corr=0 origname=NODE_19_length_78936_cov_31.250910_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00068 len=13382 cov=16.0 corr=0 origname=NODE_68_length_13382_cov_16.037243_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00092 len=5108 cov=27.3 corr=0 origname=NODE_92_length_5108_cov_27.286625_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=22.7 corr=0 origname=NODE_2_length_244736_cov_22.697460_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00067 len=15109 cov=23.3 corr=0 origname=NODE_67_length_15109_cov_23.324544_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=22.7 corr=0 origname=NODE_2_length_244736_cov_22.697460_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124411 cov=25.8 corr=0 origname=NODE_14_length_124411_cov_25.759524_pilon sw=shovill-spades/1.1.0 date=20231107	16113..16997	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00060 len=21369 cov=27.7 corr=0 origname=NODE_60_length_21369_cov_27.736958_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00093 len=5004 cov=32.6 corr=0 origname=NODE_93_length_5004_cov_32.586607_pilon sw=shovill-spades/1.1.0 date=20231107	2746..3972	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00104 len=3959 cov=35.4 corr=0 origname=NODE_104_length_3959_cov_35.436401_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00040 len=43380 cov=16.9 corr=0 origname=NODE_40_length_43380_cov_16.906651_pilon sw=shovill-spades/1.1.0 date=20231107	14700..15740	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00034 len=52443 cov=24.4 corr=0 origname=NODE_34_length_52443_cov_24.401895_pilon sw=shovill-spades/1.1.0 date=20231107	23046..23759	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00025 len=59953 cov=28.0 corr=0 origname=NODE_25_length_59953_cov_27.989142_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00052 len=29089 cov=16.5 corr=0 origname=NODE_52_length_29089_cov_16.506587_pilon sw=shovill-spades/1.1.0 date=20231107	16087..17781	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00138 len=1756 cov=13.8 corr=0 origname=NODE_139_length_1756_cov_13.802402_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00040 len=43380 cov=16.9 corr=0 origname=NODE_40_length_43380_cov_16.906651_pilon sw=shovill-spades/1.1.0 date=20231107	34307..34435	Outer membrane protein complement resistance	AMTE01000156																																																																																																								enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00117 len=2689 cov=33.0 corr=0 origname=NODE_117_length_2689_cov_33.044650_pilon sw=shovill-spades/1.1.0 date=20231107	1642..1772	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00086 len=7139 cov=11.1 corr=0 origname=NODE_86_length_7139_cov_11.053490_pilon sw=shovill-spades/1.1.0 date=20231107	2071..2752	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00068 len=13382 cov=16.0 corr=0 origname=NODE_68_length_13382_cov_16.037243_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128681	Escherichia_coli	818297480	769	0.5024	124.617 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_237.022_Circ,,Contig_2_57.8129_Circ,	159	5487634	5117764	5658630	161.784	107.227	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=61.2 corr=0 origname=NODE_76_length_5109_cov_61.172977_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00004 len=217941 cov=56.3 corr=0 origname=NODE_4_length_217941_cov_56.258237_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=49.6 corr=0 origname=NODE_11_length_145661_cov_49.595212_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00044 len=31677 cov=93.5 corr=0 origname=NODE_44_length_31677_cov_93.536788_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=49.6 corr=0 origname=NODE_11_length_145661_cov_49.595212_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=49.6 corr=0 origname=NODE_11_length_145661_cov_49.595212_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00041 len=33840 cov=46.3 corr=0 origname=NODE_41_length_33840_cov_46.311506_pilon sw=shovill-spades/1.1.0 date=20231107	32478..33131	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=63.8 corr=0 origname=NODE_61_length_11488_cov_63.806616_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=57.8 corr=0 origname=NODE_3_length_227891_cov_57.756558_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00044 len=31677 cov=93.5 corr=0 origname=NODE_44_length_31677_cov_93.536788_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00013 len=141573 cov=48.6 corr=0 origname=NODE_13_length_141573_cov_48.640725_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00017 len=123772 cov=40.6 corr=0 origname=NODE_17_length_123772_cov_40.584188_pilon sw=shovill-spades/1.1.0 date=20231107	58727..60127	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=63.2 corr=0 origname=NODE_52_length_21369_cov_63.160682_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00033 len=51407 cov=40.2 corr=0 origname=NODE_33_length_51407_cov_40.228135_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=32984 cov=61.2 corr=0 origname=NODE_43_length_32984_cov_61.231417_pilon sw=shovill-spades/1.1.0 date=20231107	3825..4118	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00057 len=15156 cov=97.1 corr=0 origname=NODE_57_length_15156_cov_97.051444_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=59.0 corr=0 origname=NODE_24_length_78936_cov_59.037187_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=59.0 corr=0 origname=NODE_24_length_78936_cov_59.037187_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00060 len=13382 cov=103.9 corr=0 origname=NODE_60_length_13382_cov_103.877963_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=61.2 corr=0 origname=NODE_76_length_5109_cov_61.172977_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=46.3 corr=0 origname=NODE_2_length_244736_cov_46.327769_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15109 cov=46.2 corr=0 origname=NODE_58_length_15109_cov_46.175190_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=46.3 corr=0 origname=NODE_2_length_244736_cov_46.327769_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=53.9 corr=0 origname=NODE_16_length_124410_cov_53.889438_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=63.2 corr=0 origname=NODE_52_length_21369_cov_63.160682_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3506 cov=72.1 corr=0 origname=NODE_87_length_3506_cov_72.095168_pilon sw=shovill-spades/1.1.0 date=20231107	922..2148	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=70.6 corr=0 origname=NODE_83_length_3959_cov_70.642709_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00033 len=51407 cov=40.2 corr=0 origname=NODE_33_length_51407_cov_40.228135_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00001 len=361968 cov=51.8 corr=0 origname=NODE_1_length_361968_cov_51.757067_pilon sw=shovill-spades/1.1.0 date=20231107	200987..201700	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00008 len=160521 cov=55.8 corr=0 origname=NODE_8_length_160521_cov_55.765574_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=49.6 corr=0 origname=NODE_11_length_145661_cov_49.595212_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22666 cov=62.1 corr=0 origname=NODE_51_length_22666_cov_62.070122_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00091 len=3036 cov=37.4 corr=0 origname=NODE_91_length_3036_cov_37.356876_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00033 len=51407 cov=40.2 corr=0 origname=NODE_33_length_51407_cov_40.228135_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00095 len=2769 cov=110.1 corr=0 origname=NODE_95_length_2769_cov_110.106049_pilon sw=shovill-spades/1.1.0 date=20231107	333..463	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31677 cov=93.5 corr=0 origname=NODE_44_length_31677_cov_93.536788_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00060 len=13382 cov=103.9 corr=0 origname=NODE_60_length_13382_cov_103.877963_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128682	Escherichia_coli	1024936198	807	0.5025	124.41 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_342.73_Circ,	193	5491016	5304690	5504070	151.831	103.512	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00078 len=5109 cov=96.0 corr=0 origname=NODE_78_length_5109_cov_96.023515_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=52.7 corr=0 origname=NODE_1_length_314496_cov_52.653313_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=145661 cov=49.7 corr=0 origname=NODE_10_length_145661_cov_49.671388_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00046 len=31677 cov=119.7 corr=0 origname=NODE_46_length_31677_cov_119.699614_pilon sw=shovill-spades/1.1.0 date=20231107	17505..20501	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=145661 cov=49.7 corr=0 origname=NODE_10_length_145661_cov_49.671388_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=145661 cov=49.7 corr=0 origname=NODE_10_length_145661_cov_49.671388_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=58171 cov=45.7 corr=0 origname=NODE_31_length_58171_cov_45.684952_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00064 len=11488 cov=85.2 corr=0 origname=NODE_64_length_11488_cov_85.245415_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=227891 cov=53.8 corr=0 origname=NODE_2_length_227891_cov_53.795698_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00046 len=31677 cov=119.7 corr=0 origname=NODE_46_length_31677_cov_119.699614_pilon sw=shovill-spades/1.1.0 date=20231107	4568..6325	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00005 len=190793 cov=47.5 corr=0 origname=NODE_5_length_190793_cov_47.454028_pilon sw=shovill-spades/1.1.0 date=20231107	68188..68676	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=52.7 corr=0 origname=NODE_1_length_314496_cov_52.653313_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00019 len=104827 cov=37.2 corr=0 origname=NODE_19_length_104827_cov_37.178191_pilon sw=shovill-spades/1.1.0 date=20231107	39782..41182	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00055 len=21369 cov=77.1 corr=0 origname=NODE_55_length_21369_cov_77.138735_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00036 len=51407 cov=40.1 corr=0 origname=NODE_36_length_51407_cov_40.053823_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00045 len=33152 cov=74.2 corr=0 origname=NODE_45_length_33152_cov_74.246847_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00061 len=14487 cov=69.7 corr=0 origname=NODE_61_length_14487_cov_69.738747_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=52.8 corr=0 origname=NODE_25_length_78936_cov_52.789283_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=52.8 corr=0 origname=NODE_25_length_78936_cov_52.789283_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00062 len=13382 cov=129.1 corr=0 origname=NODE_62_length_13382_cov_129.077496_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00078 len=5109 cov=96.0 corr=0 origname=NODE_78_length_5109_cov_96.023515_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00012 len=128216 cov=48.9 corr=0 origname=NODE_12_length_128216_cov_48.859044_pilon sw=shovill-spades/1.1.0 date=20231107	120631..121611	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00059 len=15109 cov=52.0 corr=0 origname=NODE_59_length_15109_cov_52.008124_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00012 len=128216 cov=48.9 corr=0 origname=NODE_12_length_128216_cov_48.859044_pilon sw=shovill-spades/1.1.0 date=20231107	119578..120570	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=50.9 corr=0 origname=NODE_16_length_124410_cov_50.891931_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00055 len=21369 cov=77.1 corr=0 origname=NODE_55_length_21369_cov_77.138735_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00087 len=3617 cov=74.9 corr=0 origname=NODE_87_length_3617_cov_74.930233_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00082 len=4530 cov=81.7 corr=0 origname=NODE_82_length_4530_cov_81.676278_pilon sw=shovill-spades/1.1.0 date=20231107	1961..3201	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00036 len=51407 cov=40.1 corr=0 origname=NODE_36_length_51407_cov_40.053823_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183691 cov=47.0 corr=0 origname=NODE_7_length_183691_cov_47.031808_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=59913 cov=54.8 corr=0 origname=NODE_29_length_59913_cov_54.800508_pilon sw=shovill-spades/1.1.0 date=20231107	4942..5905	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=145661 cov=49.7 corr=0 origname=NODE_10_length_145661_cov_49.671388_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00054 len=22666 cov=84.9 corr=0 origname=NODE_54_length_22666_cov_84.946445_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00093 len=2786 cov=47.9 corr=0 origname=NODE_93_length_2786_cov_47.883117_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00036 len=51407 cov=40.1 corr=0 origname=NODE_36_length_51407_cov_40.053823_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=124.4 corr=0 origname=NODE_94_length_2769_cov_124.351755_pilon sw=shovill-spades/1.1.0 date=20231107	966..1096	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00046 len=31677 cov=119.7 corr=0 origname=NODE_46_length_31677_cov_119.699614_pilon sw=shovill-spades/1.1.0 date=20231107	26609..27290	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00062 len=13382 cov=129.1 corr=0 origname=NODE_62_length_13382_cov_129.077496_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128683	Escherichia_coli	685877764	892	0.5134	114.252 KB	25	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		4	Col(pHAD28),Col440I,IncFIB(AP001918),IncFII	2	Contig_1_131.739_Circ,,Contig_2_56.4908_Circ,	89	9931491	7703934	4738712	89.978	128.914	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00141 len=5109 cov=38.2 corr=0 origname=NODE_141_length_5109_cov_38.219211_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314046 cov=32.1 corr=0 origname=NODE_3_length_314046_cov_32.112780_pilon sw=shovill-spades/1.1.0 date=20231107	198536..200518	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00022 len=124873 cov=30.0 corr=0 origname=NODE_22_length_124873_cov_30.011027_pilon sw=shovill-spades/1.1.0 date=20231107	114091..116895		44	ehxA	100	2997 / 2997	contig00084 len=31680 cov=70.7 corr=0 origname=NODE_84_length_31680_cov_70.690525_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00022 len=124873 cov=30.0 corr=0 origname=NODE_22_length_124873_cov_30.011027_pilon sw=shovill-spades/1.1.0 date=20231107	119636..120214	Type III secretions system	AE005174	espB	100	939 / 939	contig00022 len=124873 cov=30.0 corr=0 origname=NODE_22_length_124873_cov_30.011027_pilon sw=shovill-spades/1.1.0 date=20231107	121372..122310	Secreted protein B	AE005174	espJ	100	654 / 654	contig00081 len=33936 cov=32.1 corr=0 origname=NODE_81_length_33936_cov_32.111449_pilon sw=shovill-spades/1.1.0 date=20231107	806..1459	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00114 len=11488 cov=49.1 corr=0 origname=NODE_114_length_11488_cov_49.122137_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=443870 cov=30.3 corr=1 origname=NODE_1_length_443908_cov_30.256437_pilon sw=shovill-spades/1.1.0 date=20231107	146096..146665			etpD	100	1758 / 1758	contig00084 len=31680 cov=70.7 corr=0 origname=NODE_84_length_31680_cov_70.690525_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=443870 cov=30.3 corr=1 origname=NODE_1_length_443908_cov_30.256437_pilon sw=shovill-spades/1.1.0 date=20231107	321361..321849	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314046 cov=32.1 corr=0 origname=NODE_3_length_314046_cov_32.112780_pilon sw=shovill-spades/1.1.0 date=20231107	217388..218788	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00096 len=21370 cov=32.6 corr=0 origname=NODE_96_length_21370_cov_32.624982_pilon sw=shovill-spades/1.1.0 date=20231107	10497..11414	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00062 len=51407 cov=25.0 corr=0 origname=NODE_62_length_51407_cov_25.013621_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00109 len=14506 cov=46.0 corr=0 origname=NODE_109_length_14506_cov_46.010891_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00147 len=4264 cov=37.0 corr=0 origname=NODE_147_length_4264_cov_36.967410_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4264	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00041 len=78936 cov=34.6 corr=0 origname=NODE_41_length_78936_cov_34.591629_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00041 len=78936 cov=34.6 corr=0 origname=NODE_41_length_78936_cov_34.591629_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00152 len=3725 cov=49.5 corr=0 origname=NODE_152_length_3725_cov_49.503027_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00141 len=5109 cov=38.2 corr=0 origname=NODE_141_length_5109_cov_38.219211_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00006 len=244736 cov=27.4 corr=0 origname=NODE_6_length_244736_cov_27.431446_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00107 len=15109 cov=35.0 corr=0 origname=NODE_107_length_15109_cov_34.997070_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00006 len=244736 cov=27.4 corr=0 origname=NODE_6_length_244736_cov_27.431446_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00042 len=78808 cov=30.5 corr=0 origname=NODE_42_length_78808_cov_30.534218_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00096 len=21370 cov=32.6 corr=0 origname=NODE_96_length_21370_cov_32.624982_pilon sw=shovill-spades/1.1.0 date=20231107	2026..2979	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00151 len=3730 cov=50.1 corr=0 origname=NODE_151_length_3730_cov_50.075021_pilon sw=shovill-spades/1.1.0 date=20231107	1472..2698	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00149 len=3959 cov=42.7 corr=0 origname=NODE_149_length_3959_cov_42.709928_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00062 len=51407 cov=25.0 corr=0 origname=NODE_62_length_51407_cov_25.013621_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00011 len=184860 cov=30.2 corr=0 origname=NODE_11_length_184860_cov_30.185204_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00014 len=160775 cov=31.6 corr=3 origname=NODE_14_length_160775_cov_31.554013_pilon sw=shovill-spades/1.1.0 date=20231107	54263..55226	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00022 len=124873 cov=30.0 corr=0 origname=NODE_22_length_124873_cov_30.011027_pilon sw=shovill-spades/1.1.0 date=20231107	111729..113423	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00093 len=22666 cov=51.5 corr=0 origname=NODE_93_length_22666_cov_51.535150_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00191 len=1756 cov=20.9 corr=0 origname=NODE_191_length_1756_cov_20.889489_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00062 len=51407 cov=25.0 corr=0 origname=NODE_62_length_51407_cov_25.013621_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00158 len=2764 cov=60.9 corr=0 origname=NODE_158_length_2764_cov_60.891508_pilon sw=shovill-spades/1.1.0 date=20231107	2620..2750	KU674895	enterobacteriales	Col440I	95.61	114 / 114	contig00137 len=5726 cov=24.1 corr=0 origname=NODE_137_length_5726_cov_24.069565_pilon sw=shovill-spades/1.1.0 date=20231107	54..167	CP023920	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00084 len=31680 cov=70.7 corr=0 origname=NODE_84_length_31680_cov_70.690525_pilon sw=shovill-spades/1.1.0 date=20231107	26612..27293	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00119 len=9310 cov=77.5 corr=0 origname=NODE_119_length_9310_cov_77.464801_pilon sw=shovill-spades/1.1.0 date=20231107	6006..6264	AY458016														
SAM128684	Escherichia_coli	929592092	763	0.5024	124.41 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_280.691_Circ,	178	5486415	5217851	5417006	151.921	105.147	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=7011 cov=128.7 corr=0 origname=NODE_73_length_7011_cov_128.668208_pilon sw=shovill-spades/1.1.0 date=20231107	500..596	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314496 cov=54.9 corr=0 origname=NODE_2_length_314496_cov_54.914337_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00010 len=145627 cov=48.9 corr=0 origname=NODE_10_length_145627_cov_48.910840_pilon sw=shovill-spades/1.1.0 date=20231107	135910..138714		44	ehxA	100	2997 / 2997	contig00043 len=31678 cov=36.0 corr=0 origname=NODE_43_length_31678_cov_36.033875_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00010 len=145627 cov=48.9 corr=0 origname=NODE_10_length_145627_cov_48.910840_pilon sw=shovill-spades/1.1.0 date=20231107	141455..142033	Type III secretions system	AE005174	espB	100	939 / 939	contig00010 len=145627 cov=48.9 corr=0 origname=NODE_10_length_145627_cov_48.910840_pilon sw=shovill-spades/1.1.0 date=20231107	143191..144129	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=56948 cov=48.1 corr=0 origname=NODE_30_length_56948_cov_48.111015_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00062 len=11488 cov=30.4 corr=0 origname=NODE_62_length_11488_cov_30.411775_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=369637 cov=51.8 corr=1 origname=NODE_1_length_369637_cov_51.816296_pilon sw=shovill-spades/1.1.0 date=20231107	222206..222775			etpD	100	1758 / 1758	contig00043 len=31678 cov=36.0 corr=0 origname=NODE_43_length_31678_cov_36.033875_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=369637 cov=51.8 corr=1 origname=NODE_1_length_369637_cov_51.816296_pilon sw=shovill-spades/1.1.0 date=20231107	46984..47472	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314496 cov=54.9 corr=0 origname=NODE_2_length_314496_cov_54.914337_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00018 len=104827 cov=36.5 corr=0 origname=NODE_18_length_104827_cov_36.505347_pilon sw=shovill-spades/1.1.0 date=20231107	63646..65046	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=66.1 corr=0 origname=NODE_51_length_21369_cov_66.105508_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=43.0 corr=0 origname=NODE_34_length_51407_cov_42.974004_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00042 len=33152 cov=72.5 corr=0 origname=NODE_42_length_33152_cov_72.451075_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00059 len=14532 cov=80.6 corr=0 origname=NODE_59_length_14532_cov_80.594626_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=58.4 corr=0 origname=NODE_23_length_78936_cov_58.358171_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=58.4 corr=0 origname=NODE_23_length_78936_cov_58.358171_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00060 len=13382 cov=37.1 corr=0 origname=NODE_60_length_13382_cov_37.110752_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00073 len=7011 cov=128.7 corr=0 origname=NODE_73_length_7011_cov_128.668208_pilon sw=shovill-spades/1.1.0 date=20231107	2715..4040	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=238348 cov=44.0 corr=0 origname=NODE_3_length_238348_cov_43.976521_pilon sw=shovill-spades/1.1.0 date=20231107	218..1198	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00057 len=15109 cov=47.0 corr=0 origname=NODE_57_length_15109_cov_46.957318_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=238348 cov=44.0 corr=0 origname=NODE_3_length_238348_cov_43.976521_pilon sw=shovill-spades/1.1.0 date=20231107	1259..2251	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=48.9 corr=0 origname=NODE_15_length_124410_cov_48.915950_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=66.1 corr=0 origname=NODE_51_length_21369_cov_66.105508_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00091 len=3547 cov=81.4 corr=0 origname=NODE_91_length_3547_cov_81.361111_pilon sw=shovill-spades/1.1.0 date=20231107	1460..2686	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00085 len=4530 cov=88.0 corr=0 origname=NODE_85_length_4530_cov_87.958774_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=43.0 corr=0 origname=NODE_34_length_51407_cov_42.974004_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183691 cov=48.8 corr=0 origname=NODE_6_length_183691_cov_48.837244_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59927 cov=53.3 corr=0 origname=NODE_28_length_59927_cov_53.305936_pilon sw=shovill-spades/1.1.0 date=20231107	4956..5919	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00010 len=145627 cov=48.9 corr=0 origname=NODE_10_length_145627_cov_48.910840_pilon sw=shovill-spades/1.1.0 date=20231107	133548..135242	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00050 len=22666 cov=24.0 corr=0 origname=NODE_50_length_22666_cov_23.990653_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00097 len=2682 cov=30.9 corr=0 origname=NODE_97_length_2682_cov_30.865303_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=43.0 corr=0 origname=NODE_34_length_51407_cov_42.974004_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2773 cov=111.5 corr=0 origname=NODE_93_length_2773_cov_111.473527_pilon sw=shovill-spades/1.1.0 date=20231107	250..380	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31678 cov=36.0 corr=0 origname=NODE_43_length_31678_cov_36.033875_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00060 len=13382 cov=37.1 corr=0 origname=NODE_60_length_13382_cov_37.110752_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128685	Escherichia_coli	858876018	747	0.5024	126.896 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_342.683_Circ,	167	5486008	5136099	5339256	152.129	106.812	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00074 len=5108 cov=53.9 corr=0 origname=NODE_74_length_5108_cov_53.869045_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00004 len=217941 cov=51.5 corr=0 origname=NODE_4_length_217941_cov_51.484535_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145661 cov=50.0 corr=0 origname=NODE_13_length_145661_cov_49.951735_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00043 len=31680 cov=110.5 corr=0 origname=NODE_43_length_31680_cov_110.525658_pilon sw=shovill-spades/1.1.0 date=20231107	17508..20504	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145661 cov=50.0 corr=0 origname=NODE_13_length_145661_cov_49.951735_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145661 cov=50.0 corr=0 origname=NODE_13_length_145661_cov_49.951735_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00030 len=57005 cov=42.7 corr=0 origname=NODE_30_length_57005_cov_42.715307_pilon sw=shovill-spades/1.1.0 date=20231107	767..1420	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=86.5 corr=0 origname=NODE_61_length_11488_cov_86.528999_pilon sw=shovill-spades/1.1.0 date=20231107	7357..11259	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=54.4 corr=0 origname=NODE_3_length_227891_cov_54.367581_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00043 len=31680 cov=110.5 corr=0 origname=NODE_43_length_31680_cov_110.525658_pilon sw=shovill-spades/1.1.0 date=20231107	4571..6328	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00005 len=217524 cov=46.2 corr=0 origname=NODE_5_length_217524_cov_46.169606_pilon sw=shovill-spades/1.1.0 date=20231107	122671..123159	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=248347 cov=45.1 corr=0 origname=NODE_1_length_248347_cov_45.094757_pilon sw=shovill-spades/1.1.0 date=20231107	183302..184702	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=47.6 corr=0 origname=NODE_51_length_21369_cov_47.642683_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=38.2 corr=0 origname=NODE_32_length_51407_cov_38.211708_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00042 len=33152 cov=51.8 corr=0 origname=NODE_42_length_33152_cov_51.781223_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00056 len=14487 cov=76.3 corr=0 origname=NODE_56_length_14487_cov_76.260558_pilon sw=shovill-spades/1.1.0 date=20231107	11067..11360	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=52.5 corr=0 origname=NODE_25_length_78936_cov_52.474095_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=52.5 corr=0 origname=NODE_25_length_78936_cov_52.474095_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00057 len=13382 cov=114.6 corr=0 origname=NODE_57_length_13382_cov_114.569483_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00074 len=5108 cov=53.9 corr=0 origname=NODE_74_length_5108_cov_53.869045_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=44.9 corr=0 origname=NODE_2_length_244736_cov_44.897022_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=41.8 corr=0 origname=NODE_54_length_15109_cov_41.815555_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=44.9 corr=0 origname=NODE_2_length_244736_cov_44.897022_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=48.9 corr=0 origname=NODE_17_length_124410_cov_48.883051_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=47.6 corr=0 origname=NODE_51_length_21369_cov_47.642683_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00081 len=3617 cov=67.0 corr=0 origname=NODE_81_length_3617_cov_67.008508_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00080 len=3959 cov=77.3 corr=0 origname=NODE_80_length_3959_cov_77.347466_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=38.2 corr=0 origname=NODE_32_length_51407_cov_38.211708_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00008 len=183801 cov=47.2 corr=0 origname=NODE_8_length_183801_cov_47.207681_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00011 len=160521 cov=52.2 corr=0 origname=NODE_11_length_160521_cov_52.157040_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145661 cov=50.0 corr=0 origname=NODE_13_length_145661_cov_49.951735_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00050 len=22673 cov=81.6 corr=0 origname=NODE_50_length_22673_cov_81.648747_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00090 len=3036 cov=37.2 corr=0 origname=NODE_90_length_3036_cov_37.161969_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=38.2 corr=0 origname=NODE_32_length_51407_cov_38.211708_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2774 cov=143.9 corr=0 origname=NODE_93_length_2774_cov_143.868431_pilon sw=shovill-spades/1.1.0 date=20231107	2394..2524	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31680 cov=110.5 corr=0 origname=NODE_43_length_31680_cov_110.525658_pilon sw=shovill-spades/1.1.0 date=20231107	26612..27293	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00057 len=13382 cov=114.6 corr=0 origname=NODE_57_length_13382_cov_114.569483_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128686	Escherichia_coli	723780486	714	0.5023	127.934 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_245.132_Circ,,Contig_2_100.423_Circ,	142	5484437	5087110	4996972	143.683	107.81	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5109 cov=58.6 corr=0 origname=NODE_76_length_5109_cov_58.625747_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314454 cov=50.9 corr=0 origname=NODE_1_length_314454_cov_50.856386_pilon sw=shovill-spades/1.1.0 date=20231107	113529..115511	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=146551 cov=44.1 corr=0 origname=NODE_12_length_146551_cov_44.062509_pilon sw=shovill-spades/1.1.0 date=20231107	7838..10642		44	ehxA	100	2997 / 2997	contig00043 len=31678 cov=32.3 corr=0 origname=NODE_43_length_31678_cov_32.254408_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=146551 cov=44.1 corr=0 origname=NODE_12_length_146551_cov_44.062509_pilon sw=shovill-spades/1.1.0 date=20231107	4519..5097	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=146551 cov=44.1 corr=0 origname=NODE_12_length_146551_cov_44.062509_pilon sw=shovill-spades/1.1.0 date=20231107	2423..3361	Secreted protein B	AE005174	espJ	100	654 / 654	contig00041 len=33857 cov=44.0 corr=0 origname=NODE_41_length_33857_cov_43.965527_pilon sw=shovill-spades/1.1.0 date=20231107	32478..33131	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00062 len=11488 cov=27.2 corr=0 origname=NODE_62_length_11488_cov_27.236817_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=52.1 corr=0 origname=NODE_3_length_227891_cov_52.088152_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00043 len=31678 cov=32.3 corr=0 origname=NODE_43_length_31678_cov_32.254408_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=216971 cov=43.2 corr=0 origname=NODE_4_length_216971_cov_43.221662_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314454 cov=50.9 corr=0 origname=NODE_1_length_314454_cov_50.856386_pilon sw=shovill-spades/1.1.0 date=20231107	95259..96659	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00020 len=107489 cov=35.2 corr=0 origname=NODE_20_length_107489_cov_35.164370_pilon sw=shovill-spades/1.1.0 date=20231107	66308..67708	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00050 len=21370 cov=42.7 corr=0 origname=NODE_50_length_21370_cov_42.680389_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=35.7 corr=0 origname=NODE_32_length_51407_cov_35.673708_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00042 len=33152 cov=45.9 corr=0 origname=NODE_42_length_33152_cov_45.905599_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00058 len=14532 cov=78.4 corr=0 origname=NODE_58_length_14532_cov_78.371581_pilon sw=shovill-spades/1.1.0 date=20231107	11112..11405	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=53.5 corr=0 origname=NODE_25_length_78936_cov_53.530826_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=53.5 corr=0 origname=NODE_25_length_78936_cov_53.530826_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00059 len=13382 cov=43.0 corr=0 origname=NODE_59_length_13382_cov_43.032503_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5109 cov=58.6 corr=0 origname=NODE_76_length_5109_cov_58.625747_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=40.4 corr=0 origname=NODE_2_length_244736_cov_40.353962_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=40.6 corr=0 origname=NODE_56_length_15109_cov_40.561726_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=40.4 corr=0 origname=NODE_2_length_244736_cov_40.353962_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=46.0 corr=0 origname=NODE_17_length_124410_cov_45.975844_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00050 len=21370 cov=42.7 corr=0 origname=NODE_50_length_21370_cov_42.680389_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00088 len=3446 cov=73.3 corr=0 origname=NODE_88_length_3446_cov_73.349627_pilon sw=shovill-spades/1.1.0 date=20231107	1359..2585	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00084 len=3959 cov=62.0 corr=0 origname=NODE_84_length_3959_cov_62.045502_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=35.7 corr=0 origname=NODE_32_length_51407_cov_35.673708_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183801 cov=44.6 corr=0 origname=NODE_7_length_183801_cov_44.616058_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160492 cov=48.3 corr=0 origname=NODE_10_length_160492_cov_48.294163_pilon sw=shovill-spades/1.1.0 date=20231107	105521..106484	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00012 len=146551 cov=44.1 corr=0 origname=NODE_12_length_146551_cov_44.062509_pilon sw=shovill-spades/1.1.0 date=20231107	11310..13004	Translocated intimin receptor protein	EU871626	toxB	99.93	9510 / 9510	contig00051 len=19386 cov=21.0 corr=0 origname=NODE_51_length_19386_cov_20.985748_pilon sw=shovill-spades/1.1.0 date=20231107	9244..18753	Toxin B	AB011549	traT	100	423 / 423	contig00093 len=2786 cov=46.6 corr=0 origname=NODE_93_length_2786_cov_46.562152_pilon sw=shovill-spades/1.1.0 date=20231107	1321..1743	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=35.7 corr=0 origname=NODE_32_length_51407_cov_35.673708_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																										enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00094 len=2769 cov=113.8 corr=0 origname=NODE_94_length_2769_cov_113.752427_pilon sw=shovill-spades/1.1.0 date=20231107	2177..2307	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31678 cov=32.3 corr=0 origname=NODE_43_length_31678_cov_32.254408_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00059 len=13382 cov=43.0 corr=0 origname=NODE_59_length_13382_cov_43.032503_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128687	Escherichia_coli	1007475040	763	0.5024	142.41 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_321.495_Circ,	191	5488315	5270709	5472974	151.978	104.128	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00077 len=5108 cov=49.5 corr=0 origname=NODE_77_length_5108_cov_49.518637_pilon sw=shovill-spades/1.1.0 date=20231107	4511..4607	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314655 cov=54.3 corr=0 origname=NODE_1_length_314655_cov_54.294687_pilon sw=shovill-spades/1.1.0 date=20231107	113730..115712	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145661 cov=52.7 corr=0 origname=NODE_13_length_145661_cov_52.706890_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00044 len=31683 cov=121.7 corr=0 origname=NODE_44_length_31683_cov_121.745030_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145661 cov=52.7 corr=0 origname=NODE_13_length_145661_cov_52.706890_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145661 cov=52.7 corr=0 origname=NODE_13_length_145661_cov_52.706890_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00029 len=56948 cov=45.8 corr=0 origname=NODE_29_length_56948_cov_45.831841_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=81.7 corr=0 origname=NODE_63_length_11488_cov_81.720628_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=54.5 corr=0 origname=NODE_3_length_227891_cov_54.520812_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00044 len=31683 cov=121.7 corr=0 origname=NODE_44_length_31683_cov_121.745030_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217072 cov=48.1 corr=0 origname=NODE_4_length_217072_cov_48.058480_pilon sw=shovill-spades/1.1.0 date=20231107	122118..122606	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=54.3 corr=0 origname=NODE_1_length_314655_cov_54.294687_pilon sw=shovill-spades/1.1.0 date=20231107	95460..96860	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00054 len=16599 cov=48.6 corr=0 origname=NODE_54_length_16599_cov_48.627393_pilon sw=shovill-spades/1.1.0 date=20231107	5726..6643	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=51407 cov=36.9 corr=0 origname=NODE_32_length_51407_cov_36.870333_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00043 len=33152 cov=48.4 corr=0 origname=NODE_43_length_33152_cov_48.371949_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00052 len=20429 cov=79.0 corr=0 origname=NODE_52_length_20429_cov_79.000983_pilon sw=shovill-spades/1.1.0 date=20231107	2028..2321	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=53.6 corr=0 origname=NODE_23_length_78936_cov_53.567569_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=53.6 corr=0 origname=NODE_23_length_78936_cov_53.567569_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00061 len=13382 cov=107.9 corr=0 origname=NODE_61_length_13382_cov_107.902415_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00077 len=5108 cov=49.5 corr=0 origname=NODE_77_length_5108_cov_49.518637_pilon sw=shovill-spades/1.1.0 date=20231107	1067..2392	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=45.6 corr=0 origname=NODE_2_length_244736_cov_45.601933_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00059 len=15109 cov=48.2 corr=0 origname=NODE_59_length_15109_cov_48.238381_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=45.6 corr=0 origname=NODE_2_length_244736_cov_45.601933_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=49.3 corr=0 origname=NODE_17_length_124410_cov_49.299769_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00081 len=4420 cov=40.3 corr=0 origname=NODE_81_length_4420_cov_40.272811_pilon sw=shovill-spades/1.1.0 date=20231107	1443..2396	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00088 len=3617 cov=64.9 corr=0 origname=NODE_88_length_3617_cov_64.857629_pilon sw=shovill-spades/1.1.0 date=20231107	1033..2259	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00080 len=4530 cov=86.3 corr=0 origname=NODE_80_length_4530_cov_86.317189_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00032 len=51407 cov=36.9 corr=0 origname=NODE_32_length_51407_cov_36.870333_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183691 cov=49.4 corr=0 origname=NODE_7_length_183691_cov_49.407653_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00010 len=160521 cov=53.2 corr=0 origname=NODE_10_length_160521_cov_53.229527_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145661 cov=52.7 corr=0 origname=NODE_13_length_145661_cov_52.706890_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00051 len=22666 cov=90.2 corr=0 origname=NODE_51_length_22666_cov_90.167265_pilon sw=shovill-spades/1.1.0 date=20231107	12524..22033	Toxin B	AB011549	traT	100	423 / 423	contig00095 len=3036 cov=38.1 corr=0 origname=NODE_95_length_3036_cov_38.077080_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=51407 cov=36.9 corr=0 origname=NODE_32_length_51407_cov_36.870333_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00096 len=2769 cov=116.7 corr=0 origname=NODE_96_length_2769_cov_116.723674_pilon sw=shovill-spades/1.1.0 date=20231107	2312..2442	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31683 cov=121.7 corr=0 origname=NODE_44_length_31683_cov_121.745030_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=13382 cov=107.9 corr=0 origname=NODE_61_length_13382_cov_107.902415_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128688	Escherichia_coli	954272176	782	0.5024	128.047 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	2	Contig_1_191.71_Circ,,Contig_2_31.9288_Circ,	182	5488125	5218785	5436204	152.461	105.16	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00072 len=5109 cov=62.7 corr=0 origname=NODE_72_length_5109_cov_62.734954_pilon sw=shovill-spades/1.1.0 date=20231107	4512..4608	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00001 len=314496 cov=57.8 corr=0 origname=NODE_1_length_314496_cov_57.793079_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00013 len=145661 cov=50.5 corr=0 origname=NODE_13_length_145661_cov_50.545909_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00043 len=31677 cov=29.6 corr=0 origname=NODE_43_length_31677_cov_29.609637_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00013 len=145661 cov=50.5 corr=0 origname=NODE_13_length_145661_cov_50.545909_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00013 len=145661 cov=50.5 corr=0 origname=NODE_13_length_145661_cov_50.545909_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=65825 cov=51.9 corr=0 origname=NODE_27_length_65825_cov_51.889707_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=23.3 corr=0 origname=NODE_60_length_11488_cov_23.349829_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00003 len=227891 cov=56.0 corr=0 origname=NODE_3_length_227891_cov_56.012256_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00043 len=31677 cov=29.6 corr=0 origname=NODE_43_length_31677_cov_29.609637_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00004 len=217745 cov=50.7 corr=0 origname=NODE_4_length_217745_cov_50.709985_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314496 cov=57.8 corr=0 origname=NODE_1_length_314496_cov_57.793079_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21370 cov=55.7 corr=0 origname=NODE_49_length_21370_cov_55.749659_pilon sw=shovill-spades/1.1.0 date=20231107	9958..10875	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=38.6 corr=0 origname=NODE_34_length_51407_cov_38.600670_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00042 len=33051 cov=55.8 corr=0 origname=NODE_42_length_33051_cov_55.797633_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00052 len=15139 cov=88.0 corr=0 origname=NODE_52_length_15139_cov_87.985314_pilon sw=shovill-spades/1.1.0 date=20231107	11719..12012	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00024 len=78936 cov=55.2 corr=0 origname=NODE_24_length_78936_cov_55.234422_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00024 len=78936 cov=55.2 corr=0 origname=NODE_24_length_78936_cov_55.234422_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00055 len=13382 cov=28.1 corr=0 origname=NODE_55_length_13382_cov_28.057558_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00072 len=5109 cov=62.7 corr=0 origname=NODE_72_length_5109_cov_62.734954_pilon sw=shovill-spades/1.1.0 date=20231107	1068..2393	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=244736 cov=45.6 corr=0 origname=NODE_2_length_244736_cov_45.632647_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00053 len=15109 cov=43.2 corr=0 origname=NODE_53_length_15109_cov_43.248169_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=244736 cov=45.6 corr=0 origname=NODE_2_length_244736_cov_45.632647_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00016 len=124410 cov=50.8 corr=0 origname=NODE_16_length_124410_cov_50.791070_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21370 cov=55.7 corr=0 origname=NODE_49_length_21370_cov_55.749659_pilon sw=shovill-spades/1.1.0 date=20231107	18393..19346	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00085 len=3446 cov=66.0 corr=0 origname=NODE_85_length_3446_cov_65.986587_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00079 len=3959 cov=67.6 corr=0 origname=NODE_79_length_3959_cov_67.558428_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=38.6 corr=0 origname=NODE_34_length_51407_cov_38.600670_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=184021 cov=49.8 corr=0 origname=NODE_7_length_184021_cov_49.835617_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00030 len=62256 cov=57.0 corr=0 origname=NODE_30_length_62256_cov_56.986584_pilon sw=shovill-spades/1.1.0 date=20231107	7285..8248	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00013 len=145661 cov=50.5 corr=0 origname=NODE_13_length_145661_cov_50.545909_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00061 len=11066 cov=12.1 corr=0 origname=NODE_61_length_11066_cov_12.065421_pilon sw=shovill-spades/1.1.0 date=20231107	924..10433	Toxin B	AB011549	traT	100	423 / 423	contig00092 len=2786 cov=31.5 corr=0 origname=NODE_92_length_2786_cov_31.514657_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=38.6 corr=0 origname=NODE_34_length_51407_cov_38.600670_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=74.1 corr=0 origname=NODE_93_length_2769_cov_74.126587_pilon sw=shovill-spades/1.1.0 date=20231107	2312..2442	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00043 len=31677 cov=29.6 corr=0 origname=NODE_43_length_31677_cov_29.609637_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00055 len=13382 cov=28.1 corr=0 origname=NODE_55_length_13382_cov_28.057558_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128689	Escherichia_coli	1180241348	783	0.5024	124.611 KB	13	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_270.983_Circ,	221	5489183	5327273	5545320	152.365	103.039	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00073 len=5109 cov=64.8 corr=0 origname=NODE_73_length_5109_cov_64.790953_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314454 cov=55.2 corr=0 origname=NODE_3_length_314454_cov_55.163435_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.418404_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00041 len=31677 cov=102.9 corr=0 origname=NODE_41_length_31677_cov_102.947857_pilon sw=shovill-spades/1.1.0 date=20231107	17505..20501	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.418404_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.418404_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00027 len=56948 cov=46.4 corr=0 origname=NODE_27_length_56948_cov_46.399476_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00061 len=11488 cov=81.9 corr=0 origname=NODE_61_length_11488_cov_81.927174_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00005 len=227891 cov=56.0 corr=0 origname=NODE_5_length_227891_cov_56.006690_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00041 len=31677 cov=102.9 corr=0 origname=NODE_41_length_31677_cov_102.947857_pilon sw=shovill-spades/1.1.0 date=20231107	4568..6325	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=387691 cov=51.4 corr=1 origname=NODE_1_length_387691_cov_51.409825_pilon sw=shovill-spades/1.1.0 date=20231107	94366..94854	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314454 cov=55.2 corr=0 origname=NODE_3_length_314454_cov_55.163435_pilon sw=shovill-spades/1.1.0 date=20231107	217796..219196	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00049 len=21369 cov=60.8 corr=0 origname=NODE_49_length_21369_cov_60.794389_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00030 len=51407 cov=38.5 corr=0 origname=NODE_30_length_51407_cov_38.495615_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00040 len=33152 cov=62.0 corr=0 origname=NODE_40_length_33152_cov_62.038565_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00053 len=15327 cov=100.4 corr=0 origname=NODE_53_length_15327_cov_100.414085_pilon sw=shovill-spades/1.1.0 date=20231107	3125..3418	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00021 len=78936 cov=56.5 corr=0 origname=NODE_21_length_78936_cov_56.455438_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00021 len=78936 cov=56.5 corr=0 origname=NODE_21_length_78936_cov_56.455438_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00056 len=13382 cov=103.3 corr=0 origname=NODE_56_length_13382_cov_103.278986_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00073 len=5109 cov=64.8 corr=0 origname=NODE_73_length_5109_cov_64.790953_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00004 len=244736 cov=46.1 corr=0 origname=NODE_4_length_244736_cov_46.076752_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00054 len=15109 cov=50.3 corr=0 origname=NODE_54_length_15109_cov_50.333733_pilon sw=shovill-spades/1.1.0 date=20231107	4822..5811	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00004 len=244736 cov=46.1 corr=0 origname=NODE_4_length_244736_cov_46.076752_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=51.1 corr=0 origname=NODE_15_length_124410_cov_51.087243_pilon sw=shovill-spades/1.1.0 date=20231107	16112..16996	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00049 len=21369 cov=60.8 corr=0 origname=NODE_49_length_21369_cov_60.794389_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00085 len=3547 cov=75.7 corr=0 origname=NODE_85_length_3547_cov_75.683449_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=80.5 corr=0 origname=NODE_83_length_3959_cov_80.539297_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00030 len=51407 cov=38.5 corr=0 origname=NODE_30_length_51407_cov_38.495615_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00002 len=361742 cov=50.4 corr=0 origname=NODE_2_length_361742_cov_50.443627_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160521 cov=53.4 corr=0 origname=NODE_9_length_160521_cov_53.384722_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=51.4 corr=0 origname=NODE_11_length_145661_cov_51.418404_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00048 len=22666 cov=73.0 corr=0 origname=NODE_48_length_22666_cov_73.046866_pilon sw=shovill-spades/1.1.0 date=20231107	634..10143	Toxin B	AB011549	traT	100	423 / 423	contig00092 len=2682 cov=34.9 corr=0 origname=NODE_92_length_2682_cov_34.947511_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00030 len=51407 cov=38.5 corr=0 origname=NODE_30_length_51407_cov_38.495615_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00089 len=2769 cov=84.9 corr=0 origname=NODE_89_length_2769_cov_84.921210_pilon sw=shovill-spades/1.1.0 date=20231107	2582..2712	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00041 len=31677 cov=102.9 corr=0 origname=NODE_41_length_31677_cov_102.947857_pilon sw=shovill-spades/1.1.0 date=20231107	26609..27290	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00056 len=13382 cov=103.3 corr=0 origname=NODE_56_length_13382_cov_103.278986_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128690	Escherichia_coli	845113984	742	0.5023	123.95 KB	15	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_283.385_Circ,	163	5487709	5157361	5847422	165.929	106.405	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5108 cov=79.6 corr=0 origname=NODE_76_length_5108_cov_79.554714_pilon sw=shovill-spades/1.1.0 date=20231107	502..598	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=217941 cov=59.3 corr=0 origname=NODE_3_length_217941_cov_59.259757_pilon sw=shovill-spades/1.1.0 date=20231107	198944..200926	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=146717 cov=57.6 corr=0 origname=NODE_11_length_146717_cov_57.561660_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00045 len=31682 cov=71.4 corr=0 origname=NODE_45_length_31682_cov_71.418759_pilon sw=shovill-spades/1.1.0 date=20231107	17510..20506	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=146717 cov=57.6 corr=0 origname=NODE_11_length_146717_cov_57.561660_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=146717 cov=57.6 corr=0 origname=NODE_11_length_146717_cov_57.561660_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00032 len=57133 cov=50.9 corr=0 origname=NODE_32_length_57133_cov_50.855966_pilon sw=shovill-spades/1.1.0 date=20231107	895..1548	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=52.6 corr=0 origname=NODE_63_length_11488_cov_52.612968_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00009 len=155325 cov=55.6 corr=0 origname=NODE_9_length_155325_cov_55.617184_pilon sw=shovill-spades/1.1.0 date=20231107	145728..146297			etpD	100	1758 / 1758	contig00045 len=31682 cov=71.4 corr=0 origname=NODE_45_length_31682_cov_71.418759_pilon sw=shovill-spades/1.1.0 date=20231107	4573..6330	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=387050 cov=54.4 corr=0 origname=NODE_1_length_387050_cov_54.381211_pilon sw=shovill-spades/1.1.0 date=20231107	94467..94955	Type 1 fimbriae		gad	100	1270 / 1401	contig00021 len=96425 cov=62.8 corr=0 origname=NODE_21_length_96425_cov_62.806673_pilon sw=shovill-spades/1.1.0 date=20231107	1..1270	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00053 len=21369 cov=72.9 corr=0 origname=NODE_53_length_21369_cov_72.926685_pilon sw=shovill-spades/1.1.0 date=20231107	10496..11413	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00035 len=51407 cov=42.3 corr=0 origname=NODE_35_length_51407_cov_42.322044_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00044 len=33152 cov=72.1 corr=0 origname=NODE_44_length_33152_cov_72.062944_pilon sw=shovill-spades/1.1.0 date=20231107	28867..29160	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00058 len=15156 cov=107.3 corr=0 origname=NODE_58_length_15156_cov_107.312247_pilon sw=shovill-spades/1.1.0 date=20231107	3128..3421	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=60.9 corr=0 origname=NODE_23_length_78936_cov_60.934834_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=60.9 corr=0 origname=NODE_23_length_78936_cov_60.934834_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00061 len=13382 cov=63.7 corr=0 origname=NODE_61_length_13382_cov_63.748326_pilon sw=shovill-spades/1.1.0 date=20231107	10593..12803	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5108 cov=79.6 corr=0 origname=NODE_76_length_5108_cov_79.554714_pilon sw=shovill-spades/1.1.0 date=20231107	2717..4042	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00002 len=238348 cov=46.8 corr=0 origname=NODE_2_length_238348_cov_46.784258_pilon sw=shovill-spades/1.1.0 date=20231107	218..1198	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00059 len=15109 cov=51.1 corr=0 origname=NODE_59_length_15109_cov_51.125117_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00002 len=238348 cov=46.8 corr=0 origname=NODE_2_length_238348_cov_46.784258_pilon sw=shovill-spades/1.1.0 date=20231107	1259..2251	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00014 len=124410 cov=52.8 corr=0 origname=NODE_14_length_124410_cov_52.826825_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00053 len=21369 cov=72.9 corr=0 origname=NODE_53_length_21369_cov_72.926685_pilon sw=shovill-spades/1.1.0 date=20231107	2025..2978	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00086 len=3506 cov=83.9 corr=0 origname=NODE_86_length_3506_cov_83.862079_pilon sw=shovill-spades/1.1.0 date=20231107	922..2148	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00083 len=3959 cov=73.8 corr=0 origname=NODE_83_length_3959_cov_73.790072_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00035 len=51407 cov=42.3 corr=0 origname=NODE_35_length_51407_cov_42.322044_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00007 len=183691 cov=51.8 corr=0 origname=NODE_7_length_183691_cov_51.844297_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00029 len=62313 cov=62.5 corr=0 origname=NODE_29_length_62313_cov_62.531725_pilon sw=shovill-spades/1.1.0 date=20231107	7088..8051	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=146717 cov=57.6 corr=0 origname=NODE_11_length_146717_cov_57.561660_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00052 len=22741 cov=46.3 corr=0 origname=NODE_52_length_22741_cov_46.294570_pilon sw=shovill-spades/1.1.0 date=20231107	709..10218	Toxin B	AB011549	traT	100	423 / 423	contig00089 len=3036 cov=42.8 corr=0 origname=NODE_89_length_3036_cov_42.826486_pilon sw=shovill-spades/1.1.0 date=20231107	1571..1993	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00035 len=51407 cov=42.3 corr=0 origname=NODE_35_length_51407_cov_42.322044_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00092 len=2769 cov=133.8 corr=0 origname=NODE_92_length_2769_cov_133.788275_pilon sw=shovill-spades/1.1.0 date=20231107	1126..1256	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=31682 cov=71.4 corr=0 origname=NODE_45_length_31682_cov_71.418759_pilon sw=shovill-spades/1.1.0 date=20231107	26614..27295	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00061 len=13382 cov=63.7 corr=0 origname=NODE_61_length_13382_cov_63.748326_pilon sw=shovill-spades/1.1.0 date=20231107	6005..6263	AY458016																					
SAM128691	Escherichia_coli	837783804	705	0.5026	126.774 KB	16	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	24	chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	3	Contig_1_240.094_Circ,,Contig_2_295.145_Circ,,Contig_3_27.8835_Circ,	166	5449125	5039799	5236262	152.016	108.121	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	chuA	100	1983 / 1983	contig00001 len=314655 cov=56.1 corr=0 origname=NODE_1_length_314655_cov_56.108172_pilon sw=shovill-spades/1.1.0 date=20231107	113730..115712	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=47.6 corr=0 origname=NODE_11_length_145661_cov_47.610201_pilon sw=shovill-spades/1.1.0 date=20231107	135944..138748		44	ehxA	100	2997 / 2997	contig00044 len=31678 cov=29.9 corr=0 origname=NODE_44_length_31678_cov_29.874315_pilon sw=shovill-spades/1.1.0 date=20231107	17506..20502	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=47.6 corr=0 origname=NODE_11_length_145661_cov_47.610201_pilon sw=shovill-spades/1.1.0 date=20231107	141489..142067	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=47.6 corr=0 origname=NODE_11_length_145661_cov_47.610201_pilon sw=shovill-spades/1.1.0 date=20231107	143225..144163	Secreted protein B	AE005174	espJ	100	654 / 654	contig00043 len=33136 cov=48.1 corr=0 origname=NODE_43_length_33136_cov_48.145287_pilon sw=shovill-spades/1.1.0 date=20231107	710..1363	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00063 len=11488 cov=25.3 corr=0 origname=NODE_63_length_11488_cov_25.347109_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=227891 cov=53.7 corr=0 origname=NODE_2_length_227891_cov_53.690834_pilon sw=shovill-spades/1.1.0 date=20231107	80460..81029			etpD	100	1758 / 1758	contig00044 len=31678 cov=29.9 corr=0 origname=NODE_44_length_31678_cov_29.874315_pilon sw=shovill-spades/1.1.0 date=20231107	4569..6326	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00003 len=217524 cov=46.8 corr=2 origname=NODE_3_length_217524_cov_46.758183_pilon sw=shovill-spades/1.1.0 date=20231107	122671..123159	Type 1 fimbriae		gad	100	1401 / 1401	contig00001 len=314655 cov=56.1 corr=0 origname=NODE_1_length_314655_cov_56.108172_pilon sw=shovill-spades/1.1.0 date=20231107	95460..96860	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00052 len=21369 cov=40.7 corr=0 origname=NODE_52_length_21369_cov_40.740812_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00031 len=51407 cov=41.7 corr=0 origname=NODE_31_length_51407_cov_41.663282_pilon sw=shovill-spades/1.1.0 date=20231107	18042..20132	Adherence protein	AE005174	iss	98.3	294 / 294	contig00041 len=33879 cov=43.1 corr=0 origname=NODE_41_length_33879_cov_43.063573_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00060 len=14758 cov=89.6 corr=0 origname=NODE_60_length_14758_cov_89.582941_pilon sw=shovill-spades/1.1.0 date=20231107	11338..11631	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00025 len=78936 cov=54.1 corr=0 origname=NODE_25_length_78936_cov_54.128176_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00025 len=78936 cov=54.1 corr=0 origname=NODE_25_length_78936_cov_54.128176_pilon sw=shovill-spades/1.1.0 date=20231107	747..1040	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00088 len=3725 cov=26.0 corr=0 origname=NODE_88_length_3725_cov_26.008531_pilon sw=shovill-spades/1.1.0 date=20231107	936..3146	Plasmid-encoded catalase peroxidase	AB011549	nleB	100	981 / 981	contig00019 len=116274 cov=49.8 corr=0 origname=NODE_19_length_116274_cov_49.813725_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00058 len=15109 cov=43.8 corr=0 origname=NODE_58_length_15109_cov_43.824278_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00019 len=116274 cov=49.8 corr=0 origname=NODE_19_length_116274_cov_49.813725_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00017 len=124410 cov=48.3 corr=0 origname=NODE_17_length_124410_cov_48.276080_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00052 len=21369 cov=40.7 corr=0 origname=NODE_52_length_21369_cov_40.740812_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00090 len=3547 cov=73.3 corr=0 origname=NODE_90_length_3547_cov_73.262153_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00086 len=3959 cov=58.5 corr=0 origname=NODE_86_length_3959_cov_58.495605_pilon sw=shovill-spades/1.1.0 date=20231107	1390..2630	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00031 len=51407 cov=41.7 corr=0 origname=NODE_31_length_51407_cov_41.663282_pilon sw=shovill-spades/1.1.0 date=20231107	22727..23767	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00006 len=183901 cov=47.3 corr=0 origname=NODE_6_length_183901_cov_47.289038_pilon sw=shovill-spades/1.1.0 date=20231107	160153..160866	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00009 len=160521 cov=52.2 corr=0 origname=NODE_9_length_160521_cov_52.248233_pilon sw=shovill-spades/1.1.0 date=20231107	105550..106513	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=47.6 corr=0 origname=NODE_11_length_145661_cov_47.610201_pilon sw=shovill-spades/1.1.0 date=20231107	133582..135276	Translocated intimin receptor protein	EU871626	traT	100	423 / 423	contig00113 len=1756 cov=37.4 corr=0 origname=NODE_113_length_1756_cov_37.428829_pilon sw=shovill-spades/1.1.0 date=20231107	291..713	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00031 len=51407 cov=41.7 corr=0 origname=NODE_31_length_51407_cov_41.663282_pilon sw=shovill-spades/1.1.0 date=20231107	42334..42462	Outer membrane protein complement resistance	AMTE01000156																																																																																																																						enterobacteriales	Col(pHAD28)	92.86	126 / 131	contig00094 len=2769 cov=100.7 corr=0 origname=NODE_94_length_2769_cov_100.731889_pilon sw=shovill-spades/1.1.0 date=20231107	1..126	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00044 len=31678 cov=29.9 corr=0 origname=NODE_44_length_31678_cov_29.874315_pilon sw=shovill-spades/1.1.0 date=20231107	26610..27291	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00067 len=9309 cov=39.5 corr=0 origname=NODE_67_length_9309_cov_39.460621_pilon sw=shovill-spades/1.1.0 date=20231107	3047..3305	AY458016																					
SAM128692	Escherichia_coli	683964710	729	0.5023	127.918 KB	14	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH82	27	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nlpI,ompT,stx1a-O157-GPU96MM,stx2c-O157-FLY16,terC,terC,terC,tir,toxB,traT,traT	0		0		3	Col(pHAD28),IncFIB(AP001918),IncFII	1	Contig_1_190.151_Circ,	139	5483729	4906374	4721234	140.809	111.767	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00076 len=5163 cov=59.1 corr=0 origname=NODE_76_length_5163_cov_59.093651_pilon sw=shovill-spades/1.1.0 date=20231107	4566..4662	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00002 len=314088 cov=46.5 corr=0 origname=NODE_2_length_314088_cov_46.508088_pilon sw=shovill-spades/1.1.0 date=20231107	113571..115553	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00011 len=145661 cov=43.9 corr=0 origname=NODE_11_length_145661_cov_43.907989_pilon sw=shovill-spades/1.1.0 date=20231107	6914..9718		44	ehxA	100	2997 / 2997	contig00045 len=31680 cov=32.5 corr=0 origname=NODE_45_length_31680_cov_32.460540_pilon sw=shovill-spades/1.1.0 date=20231107	11177..14173	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00011 len=145661 cov=43.9 corr=0 origname=NODE_11_length_145661_cov_43.907989_pilon sw=shovill-spades/1.1.0 date=20231107	3595..4173	Type III secretions system	AE005174	espB	100	939 / 939	contig00011 len=145661 cov=43.9 corr=0 origname=NODE_11_length_145661_cov_43.907989_pilon sw=shovill-spades/1.1.0 date=20231107	1499..2437	Secreted protein B	AE005174	espJ	100	654 / 654	contig00031 len=56948 cov=42.0 corr=0 origname=NODE_31_length_56948_cov_41.958598_pilon sw=shovill-spades/1.1.0 date=20231107	55586..56239	Prophage-encoded type III secretion system effector	AE005174	espP	99.92	3903 / 3903	contig00060 len=11488 cov=26.9 corr=0 origname=NODE_60_length_11488_cov_26.943055_pilon sw=shovill-spades/1.1.0 date=20231107	230..4132	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00001 len=444738 cov=44.3 corr=1 origname=NODE_1_length_444776_cov_44.314135_pilon sw=shovill-spades/1.1.0 date=20231107	146863..147432			etpD	100	1758 / 1758	contig00045 len=31680 cov=32.5 corr=0 origname=NODE_45_length_31680_cov_32.460540_pilon sw=shovill-spades/1.1.0 date=20231107	25353..27110	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00001 len=444738 cov=44.3 corr=1 origname=NODE_1_length_444776_cov_44.314135_pilon sw=shovill-spades/1.1.0 date=20231107	322229..322717	Type 1 fimbriae		gad	100	1401 / 1401	contig00002 len=314088 cov=46.5 corr=0 origname=NODE_2_length_314088_cov_46.508088_pilon sw=shovill-spades/1.1.0 date=20231107	95301..96701	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00051 len=21369 cov=57.5 corr=0 origname=NODE_51_length_21369_cov_57.513817_pilon sw=shovill-spades/1.1.0 date=20231107	9957..10874	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00034 len=51407 cov=35.0 corr=0 origname=NODE_34_length_51407_cov_35.043749_pilon sw=shovill-spades/1.1.0 date=20231107	31276..33366	Adherence protein	AE005174	iss	98.3	294 / 294	contig00044 len=33152 cov=59.0 corr=0 origname=NODE_44_length_33152_cov_58.994283_pilon sw=shovill-spades/1.1.0 date=20231107	3993..4286	Increased serum survival	CP001509	iss	98.3	294 / 294	contig00050 len=21529 cov=75.7 corr=0 origname=NODE_50_length_21529_cov_75.653792_pilon sw=shovill-spades/1.1.0 date=20231107	18109..18402	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00023 len=78936 cov=48.8 corr=0 origname=NODE_23_length_78936_cov_48.778883_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00023 len=78936 cov=48.8 corr=0 origname=NODE_23_length_78936_cov_48.778883_pilon sw=shovill-spades/1.1.0 date=20231107	77897..78190	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00057 len=13382 cov=29.2 corr=0 origname=NODE_57_length_13382_cov_29.177714_pilon sw=shovill-spades/1.1.0 date=20231107	580..2790	Plasmid-encoded catalase peroxidase	AB011549	nleA	99.92	1326 / 1326	contig00076 len=5163 cov=59.1 corr=0 origname=NODE_76_length_5163_cov_59.093651_pilon sw=shovill-spades/1.1.0 date=20231107	1122..2447	Non-LEE encoded effector A	AE005174	nleB	100	981 / 981	contig00003 len=238348 cov=38.6 corr=0 origname=NODE_3_length_238348_cov_38.585343_pilon sw=shovill-spades/1.1.0 date=20231107	237151..238131	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00056 len=15109 cov=41.7 corr=0 origname=NODE_56_length_15109_cov_41.721201_pilon sw=shovill-spades/1.1.0 date=20231107	9299..10288	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00003 len=238348 cov=38.6 corr=0 origname=NODE_3_length_238348_cov_38.585343_pilon sw=shovill-spades/1.1.0 date=20231107	236098..237090	Non-LEE encoded effector C	AE005174	nlpI	99.77	885 / 885	contig00015 len=124410 cov=41.8 corr=0 origname=NODE_15_length_124410_cov_41.826511_pilon sw=shovill-spades/1.1.0 date=20231107	107415..108299	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00051 len=21369 cov=57.5 corr=0 origname=NODE_51_length_21369_cov_57.513817_pilon sw=shovill-spades/1.1.0 date=20231107	18392..19345	Outer membrane protease (protein protease 7)	AKKY01000312	stx1a-O157-GPU96MM	100	1227 / 1227	contig00085 len=3446 cov=74.2 corr=0 origname=NODE_85_length_3446_cov_74.180924_pilon sw=shovill-spades/1.1.0 date=20231107	862..2088	stx1a-O157-GPU96MM	AB035142	stx2c-O157-FLY16	100	1241 / 1241	contig00082 len=3959 cov=65.7 corr=0 origname=NODE_82_length_3959_cov_65.675026_pilon sw=shovill-spades/1.1.0 date=20231107	1330..2570	stx2c-O157-FLY16	AB015057	terC	100	1041 / 1041	contig00034 len=51407 cov=35.0 corr=0 origname=NODE_34_length_51407_cov_35.043749_pilon sw=shovill-spades/1.1.0 date=20231107	27641..28681	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00005 len=183911 cov=41.6 corr=0 origname=NODE_5_length_183911_cov_41.646388_pilon sw=shovill-spades/1.1.0 date=20231107	23046..23759	Tellurium ion resistance protein	CP007491	terC	98.55	964 / 966	contig00028 len=59929 cov=45.1 corr=0 origname=NODE_28_length_59929_cov_45.137839_pilon sw=shovill-spades/1.1.0 date=20231107	54009..54972	Tellurium ion resistance protein	MG591698	tir	100	1695 / 1695	contig00011 len=145661 cov=43.9 corr=0 origname=NODE_11_length_145661_cov_43.907989_pilon sw=shovill-spades/1.1.0 date=20231107	10386..12080	Translocated intimin receptor protein	EU871626	toxB	99.94	9510 / 9510	contig00061 len=10445 cov=13.0 corr=0 origname=NODE_61_length_10445_cov_13.043945_pilon sw=shovill-spades/1.1.0 date=20231107	853..10362	Toxin B	AB011549	traT	100	423 / 423	contig00088 len=3036 cov=33.0 corr=0 origname=NODE_88_length_3036_cov_32.994567_pilon sw=shovill-spades/1.1.0 date=20231107	1044..1466	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00034 len=51407 cov=35.0 corr=0 origname=NODE_34_length_51407_cov_35.043749_pilon sw=shovill-spades/1.1.0 date=20231107	8946..9074	Outer membrane protein complement resistance	AMTE01000156																																																																																																	enterobacteriales	Col(pHAD28)	93.13	131 / 131	contig00093 len=2769 cov=87.2 corr=0 origname=NODE_93_length_2769_cov_87.224048_pilon sw=shovill-spades/1.1.0 date=20231107	11..141	KU674895	enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00045 len=31680 cov=32.5 corr=0 origname=NODE_45_length_31680_cov_32.460540_pilon sw=shovill-spades/1.1.0 date=20231107	4388..5069	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00057 len=13382 cov=29.2 corr=0 origname=NODE_57_length_13382_cov_29.177714_pilon sw=shovill-spades/1.1.0 date=20231107	7120..7378	AY458016																					
SAM128693	Escherichia_coli	615173988	650	0.5028	160.605 KB	11	adk_12,fumC_12,gyrB_8,icd_12,mdh_15,purA_2,recA_2	11	7:157:157	E	FimH36	26	astA,chuA,eae-g01-gamma,ehxA,espA,espB,espJ,espP,espY2:000868321,etpD,fimH,gad,gad,hlyE,iha,iss,iss,iss,iss,katP,nleA,nleB,nleB,nleC,nleC,nlpI,ompT,stx1a-O157-FLY16,terC,terC,terC,tir,tir,toxB,traT,traT	4	aph(6)-Id,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,aph(3'')-Ib,sul2,tet(B)	0		2	IncFIB(AP001918),IncFII	0		125	5516721	4908331	4259280	127.022	112.395	adk	100	100	adk_12	fumC	100	100	fumC_12	gyrB	100	100	gyrB_8	icd	100	100	icd_12	mdh	100	100	mdh_15	purA	100	100	purA_2	recA	100	100	recA_2	7	157	157	H_fliC	100	1758 / 1758	O1_wzx	100	1392 / 1392	O2_wzy	100	1185 / 1185	astA	100	97 / 117	contig00063 len=8688 cov=64.5 corr=0 origname=NODE_63_length_8688_cov_64.491567_pilon sw=shovill-spades/1.1.0 date=20231107	8090..8186	Heat-stable enterotoxin EAST-1	HM099897	chuA	100	1983 / 1983	contig00003 len=314455 cov=42.7 corr=0 origname=NODE_3_length_314455_cov_42.674969_pilon sw=shovill-spades/1.1.0 date=20231107	113538..115520	Outer membrane hemin receptor	UGGA01000003	eae-g01-gamma	100	2805 / 2805	contig00012 len=145662 cov=37.0 corr=0 origname=NODE_12_length_145662_cov_37.003655_pilon sw=shovill-spades/1.1.0 date=20231107	135945..138749		44	ehxA	100	2997 / 2997	contig00038 len=31633 cov=24.7 corr=0 origname=NODE_38_length_31633_cov_24.731818_pilon sw=shovill-spades/1.1.0 date=20231107	17461..20457	Enterohaemolysin	AB011549	espA	100	579 / 579	contig00012 len=145662 cov=37.0 corr=0 origname=NODE_12_length_145662_cov_37.003655_pilon sw=shovill-spades/1.1.0 date=20231107	141490..142068	Type III secretions system	AE005174	espB	100	939 / 939	contig00012 len=145662 cov=37.0 corr=0 origname=NODE_12_length_145662_cov_37.003655_pilon sw=shovill-spades/1.1.0 date=20231107	143226..144164	Secreted protein B	AE005174	espJ	100	654 / 654	contig00028 len=55390 cov=39.2 corr=1 origname=NODE_28_length_55390_cov_39.241777_pilon sw=shovill-spades/1.1.0 date=20231107	1181..1834	Prophage-encoded type III secretion system effector	AE005174	espP	100	3903 / 3903	contig00054 len=11475 cov=19.5 corr=0 origname=NODE_54_length_11475_cov_19.465478_pilon sw=shovill-spades/1.1.0 date=20231107	170..4072	Serine protease autotransporter EspP	AB011549	espY2:000868321	100	570 / 570	contig00002 len=374779 cov=38.8 corr=0 origname=NODE_2_length_374779_cov_38.832698_pilon sw=shovill-spades/1.1.0 date=20231107	228405..228974			etpD	100	1758 / 1758	contig00038 len=31633 cov=24.7 corr=0 origname=NODE_38_length_31633_cov_24.731818_pilon sw=shovill-spades/1.1.0 date=20231107	4524..6281	Type II secretion protein EtpD	AB011549	fimH	100	489 / 489	contig00002 len=374779 cov=38.8 corr=0 origname=NODE_2_length_374779_cov_38.832698_pilon sw=shovill-spades/1.1.0 date=20231107	53275..53763	Type 1 fimbriae		gad	100	1401 / 1401	contig00003 len=314455 cov=42.7 corr=0 origname=NODE_3_length_314455_cov_42.674969_pilon sw=shovill-spades/1.1.0 date=20231107	95268..96668	Glutamate decarboxylase	BA000007	gad	100	1401 / 1401	contig00005 len=249584 cov=39.3 corr=0 origname=NODE_5_length_249584_cov_39.274256_pilon sw=shovill-spades/1.1.0 date=20231107	183211..184611	Glutamate decarboxylase	BA000007	hlyE	98.47	918 / 918	contig00046 len=17289 cov=45.2 corr=0 origname=NODE_46_length_17289_cov_45.189906_pilon sw=shovill-spades/1.1.0 date=20231107	6417..7334	Avian E. coli haemolysin	ECU57430	iha	100	2091 / 2091	contig00032 len=47583 cov=31.9 corr=0 origname=NODE_32_length_47583_cov_31.937042_pilon sw=shovill-spades/1.1.0 date=20231107	33965..36055	Adherence protein	AE005174	iss	97.96	294 / 294	contig00030 len=48729 cov=50.8 corr=1 origname=NODE_30_length_48729_cov_50.811567_pilon sw=shovill-spades/1.1.0 date=20231107	44889..45182	Increased serum survival	CP001509	iss	98.53	272 / 294	contig00166 len=599 cov=43.8 corr=0 origname=NODE_166_length_599_cov_43.812992_pilon sw=shovill-spades/1.1.0 date=20231107	1..272	Increased serum survival	CP001509	iss	98.64	294 / 294	contig00050 len=15011 cov=42.3 corr=0 origname=NODE_50_length_15011_cov_42.264678_pilon sw=shovill-spades/1.1.0 date=20231107	3764..4057	Increased serum survival	CP001665	iss	98.64	294 / 294	contig00050 len=15011 cov=42.3 corr=0 origname=NODE_50_length_15011_cov_42.264678_pilon sw=shovill-spades/1.1.0 date=20231107	3764..4057	Increased serum survival	CP001846	katP	100	2211 / 2211	contig00052 len=13427 cov=25.8 corr=0 origname=NODE_52_length_13427_cov_25.751350_pilon sw=shovill-spades/1.1.0 date=20231107	10638..12848	Plasmid-encoded catalase peroxidase	AB011549	nleA	100	1326 / 1326	contig00063 len=8688 cov=64.5 corr=0 origname=NODE_63_length_8688_cov_64.491567_pilon sw=shovill-spades/1.1.0 date=20231107	2972..4297	Non-LEE encoded effector A	AE005174	nleB	99.9	981 / 981	contig00013 len=139090 cov=43.1 corr=0 origname=NODE_13_length_139090_cov_43.054583_pilon sw=shovill-spades/1.1.0 date=20231107	6606..7586	Non-LEE encoded effector B	AE005174	nleB	100	990 / 990	contig00049 len=15107 cov=36.6 corr=0 origname=NODE_49_length_15107_cov_36.648508_pilon sw=shovill-spades/1.1.0 date=20231107	4820..5809	Non-LEE encoded effector B	AE005174	nleC	100	993 / 993	contig00013 len=139090 cov=43.1 corr=0 origname=NODE_13_length_139090_cov_43.054583_pilon sw=shovill-spades/1.1.0 date=20231107	7647..8639	Non-LEE encoded effector C	AE005174	nleC	99.9	987 / 987	contig00004 len=303277 cov=34.2 corr=0 origname=NODE_4_length_303277_cov_34.209987_pilon sw=shovill-spades/1.1.0 date=20231107	479..1465	Non-LEE encoded effector C	AP010953	nlpI	99.77	885 / 885	contig00014 len=124346 cov=38.4 corr=0 origname=NODE_14_length_124346_cov_38.424321_pilon sw=shovill-spades/1.1.0 date=20231107	16126..17010	lipoprotein NlpI precursor	CP000243	ompT	100	954 / 954	contig00081 len=4269 cov=38.4 corr=0 origname=NODE_81_length_4269_cov_38.399234_pilon sw=shovill-spades/1.1.0 date=20231107	1292..2245	Outer membrane protease (protein protease 7)	AKKX01000238	stx1a-O157-FLY16	100	1227 / 1227	contig00025 len=67894 cov=38.2 corr=0 origname=NODE_25_length_67894_cov_38.190006_pilon sw=shovill-spades/1.1.0 date=20231107	503..1729	stx1a-O157-FLY16	AF461168	terC	100	1041 / 1041	contig00032 len=47583 cov=31.9 corr=0 origname=NODE_32_length_47583_cov_31.937042_pilon sw=shovill-spades/1.1.0 date=20231107	30331..31371	Tellurium ion resistance protein	AE005174	terC	98.74	714 / 714	contig00009 len=183583 cov=38.3 corr=0 origname=NODE_9_length_183583_cov_38.318008_pilon sw=shovill-spades/1.1.0 date=20231107	22826..23539	Tellurium ion resistance protein	CP007491	terC	98.65	964 / 966	contig00011 len=160605 cov=42.3 corr=0 origname=NODE_11_length_160605_cov_42.347988_pilon sw=shovill-spades/1.1.0 date=20231107	54122..55085	Tellurium ion resistance protein	MG591698	tir	99.94	1677 / 1677	contig00012 len=145662 cov=37.0 corr=0 origname=NODE_12_length_145662_cov_37.003655_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AE005174	tir	99.94	1677 / 1677	contig00012 len=145662 cov=37.0 corr=0 origname=NODE_12_length_145662_cov_37.003655_pilon sw=shovill-spades/1.1.0 date=20231107	133601..135277	Translocated intimin receptor protein	AF125993	toxB	99.95	9510 / 9510	contig00019 len=95169 cov=39.1 corr=0 origname=NODE_19_length_95169_cov_39.078167_pilon sw=shovill-spades/1.1.0 date=20231107	73114..82623	Toxin B	AB011549	traT	100	423 / 423	contig00032 len=47583 cov=31.9 corr=0 origname=NODE_32_length_47583_cov_31.937042_pilon sw=shovill-spades/1.1.0 date=20231107	1410..1832	Outer membrane protein complement resistance	AKKX01000148	traT	100	129 / 129	contig00032 len=47583 cov=31.9 corr=0 origname=NODE_32_length_47583_cov_31.937042_pilon sw=shovill-spades/1.1.0 date=20231107	11636..11764	Outer membrane protein complement resistance	AMTE01000156																													aph(6)-Id	100	837/837	contig00077 len=5152 cov=34.6 corr=0 origname=NODE_77_length_5152_cov_34.555424_pilon sw=shovill-spades/1.1.0 date=20231107	1100..1936	Streptomycin	M28829	aph(3'')-Ib	100	803/804	contig00077 len=5152 cov=34.6 corr=0 origname=NODE_77_length_5152_cov_34.555424_pilon sw=shovill-spades/1.1.0 date=20231107	298..1100	Streptomycin	AF024602	aph(3'')-Ib	99.88	804/804	contig00077 len=5152 cov=34.6 corr=0 origname=NODE_77_length_5152_cov_34.555424_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321551	aph(3'')-Ib	99.88	804/804	contig00077 len=5152 cov=34.6 corr=0 origname=NODE_77_length_5152_cov_34.555424_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF313472	aph(3'')-Ib	99.88	804/804	contig00077 len=5152 cov=34.6 corr=0 origname=NODE_77_length_5152_cov_34.555424_pilon sw=shovill-spades/1.1.0 date=20231107	297..1100	Streptomycin	AF321550	sul2	100	816/816	contig00077 len=5152 cov=34.6 corr=0 origname=NODE_77_length_5152_cov_34.555424_pilon sw=shovill-spades/1.1.0 date=20231107	2709..3524	Sulfamethoxazole	AJ830714	tet(B)	100	1206/1206	contig00068 len=6731 cov=16.2 corr=0 origname=NODE_68_length_6731_cov_16.192620_pilon sw=shovill-spades/1.1.0 date=20231107	4199..5404	Doxycycline, Tetracycline, Minocycline	AP000342						enterobacteriales	IncFIB(AP001918)	98.24	682 / 682	contig00038 len=31633 cov=24.7 corr=0 origname=NODE_38_length_31633_cov_24.731818_pilon sw=shovill-spades/1.1.0 date=20231107	26565..27246	AP001918	enterobacteriales	IncFII	96.17	261 / 261	contig00052 len=13427 cov=25.8 corr=0 origname=NODE_52_length_13427_cov_25.751350_pilon sw=shovill-spades/1.1.0 date=20231107	6049..6307	AY458016																												
