{"text_format":"3","workbook":"xlsx","n_sheets":5,"sheets":["Supplementary Table S1","Supplementary Table S2","Supplementary Table S3","Supplementary Table S4","Supplementary Table S5"],"not_rendered":{"defined_names":1},"read":"whole","date_system":"1900"}

{"sheet":"Supplementary Table S1","index":0,"n_rows":92,"n_cols":3,"rows_kept":92}
["Supplementary Table S1. Abbreviations."]
["Abbreviation","Full Name","Alias"]
["3′ss","3′ splice site"]
["5′ss","5′ splice site"]
["ABCE1","ATP binding cassette subfamily E member 1","ABC38, OABP, RLI, RLI1, RNASEL1, RNASELI, RNS4I"]
["ACTN4","Actinin alpha 4","ACTININ-4, FSGS, FSGS1"]
["AD","Alzheimer's Disease"]
["AGK","Acylglycerol kinase","CATC5, CTRCT38, MTDPS10, MULK"]
["BASP1","Brain abundant membrane attached signal protein 1","CAP-23, CAP23, NAP-22, NAP22"]
["BEX3","Brain expressed X-linked 3","Bex, DXS6984E, HGR74, NADE, NGFRAP1"]
["C2A-2B-3-4","CircRNA encompassing exons 2A, 2B, 3 and 4 of human SMN gene"]
["C2B-3-4","CircRNA encompassing exons 2B, 3 and 4 of human SMN gene"]
["CD44","CD44 molecule (Indian blood group)","CDW44, CSPG8, ECM-III, ECMR-III, H-CAM, HCELL, HUTCH-1, HUTCH-I, Hermes-1, IN, LHR, MC56, MDU2, MDU3, MIC4, Pgp1"]
["CELSR3","Cadherin EGF LAG seven-pass G-type receptor 3","ADGRC3, CDHF11, EGFL1, FMI1, HFMI1, MEGF2, RESDA1"]
["circRNA","Circular RNA"]
["CNDP2","Carnosine dipeptidase 2","CN2, CPGL, HEL-S-13, HsT2298, PEPA"]
["CNTN1","Contactin 1","CMYP12, F3, GP135, MYPCN"]
["dev.","Development"]
["DHX9","DExH-box helicase 9","DDX9, LKP, NDH2, NDHII, RHA"]
["Dox","Doxycycline"]
["ECM‑receptor","Extracellular matrix-receptor"]
["EJC","Exon junction complex"]
["ELF2","E74 like ETS transcription factor 2","EU32, NERF, NERF-1A, NERF-1B, NERF-1a, b, NERF-2"]
["EN2","Engrailed homeobox 2"]
["ERP44","Endoplasmic reticulum protein 44","PDIA10, TXNDC4"]
["Evec","Sequence transcribed between the TSS and Iori at the integration site in the stable cell lines"]
["F","Forward primer"]
["GAPDH","Glyceraldehyde 3-Phosphate Dehydrogenase","G3PD, GAPD, HEL-S-162eP"]
["GET3","Guided Entry of Tail-anchored proteins factor 3, ATPase","ARSA-I, ARSA1, ASNA-I, ASNA1, CMD2H, TRC40"]
["GFRA1","GDNF family receptor alpha 1","GDNFR, GDNFR-alpha-1, GDNFRA, GFR-ALPHA-1, GFRalpha-1, RET1L, RETL1, RHDA4, TRNR1"]
["GK3","Glycerol kinase 3, coding for GK3P","GK3, GKP3, GKTB"]
["h","Hour(s)"]
["H1-10","H1.10 linker histone","H1.10, H1FX, H1X"]
["H2AC20","Histone H2A type 2-C","H2A, H2A-GL101, H2A/q, H2AFQ, HIST2H2AC"]
["Homo.","Homologous"]
["HPV","Human papillomavirus"]
["IQGAP2","IQ motif containing GTPase activating protein 2"]
["JADE1","Jade family PHD finger 1","PHF17"]
["L2A-2B-3-4","Linear RNA encompassing exons 2A, 2B, 3 and 4 of human SMN gene"]
["L2A-2B-4","Linear RNA encompassing exons 2A, 2B and 4 of human SMN gene"]
["LC-MS/MS","Liquid chromatography with tandem mass spectrometry "]
["LSCC","Laryngeal squamous cell carcinoma"]
["ME2","NAD-dependent malic enzyme, mitochondrial","ODS1"]
["min","Minute(s)"]
["MKI67","Marker of proliferation Ki-67","KIA, MIB-, MIB-1, PPP1R105"]
["NAA15","N-alpha-acetyltransferase 15, NatA auxiliary subunit","Ga19, MRD50, NARG1, NAT1P, NATH, TBDN, TBDN100"]
["NAF1","nuclear assembly factor 1 ribonucleoprotein","PFBMFT7"]
["NAMPT","Nicotinamide phosphoribosyltransferase","1110035O14Rik, PBEF, PBEF1, VF, VISFATIN"]
["ncRNA","Non‑coding RNA"]
["NDRG1","N-myc downstream regulated 1","CAP43, CMT4D, DRG-1, DRG1, GC4, HMSNL, NDR1, NMSL, PROXY1, RIT42, RTP, TARG1, TDD5"]
["NOM1","Nucleolar protein with MIF4G domain 1","SGD1, C7orf3, PPP1R113"]
["nt","Nucleotide"]
["NuRD complex","Nucleosome Remodeling and Deacetylase (NuRD) complex , a major chromatin remodeling complex"]
["OR51E2","Olfactory receptor family 51 subfamily E member 2","HPRAJ, OR51E3P, OR52A2, PSGR"]
["org.","Oganization"]
["PCBP3","Poly(rC) binding protein 3","ALPHA-CP3, PCBP3-OT1, PCBP3OT"]
["PCDH19","Protocadherin 19","DEE9, EFMR, EIEE9"]
["PD","Parkinson's Disease"]
["PDZD8","PDZ domain containing 8","IDDADF, PDZK8"]
["POLK","DNA polymerase kappa","DINB1, DINP, POLQ"]
["PPID","Peptidyl-prolyl cis-trans isomerase D","CYP-40, CYPD"]
["R","Reverse prime"]
["RAC3","Rac family small GTPase 3"]
["RBBP9","RB binding protein 9, serine hydrolase","BOG, RBBP10"]
["reg.","Regulation"]
["REPIN1","Replication initiator 1","AP4, RIP60, ZNF464, Zfp464"]
["RNP","Ribonucleoprotein"]
["RPS3A","Ribosomal protein S3A, also know as FTE1, MFTL, S3A, eS1","FTE1, MFTL, S3A, eS1"]
["SACM1L","SAC1 like phosphatidylinositide phosphatase","SAC1"]
["KHDRBS1","KH RNA binding domain containing, signal transduction associated 1","Sam68, p62, p68"]
["SAMD5","Serile alpha motif domain containing 5","dJ875H10.1"]
["SARS1","Seryl-tRNA synthetase 1","NEDMAS, SARS, SERRS, SERS"]
["SETD7","SET domain containing 7, histone lysine methyltransferase","KMT7, SET7, SET7/9, SET9"]
["SDC","Sodium deoxycholate"]
["SHTN1","Shootin-1"]
["SMA","Spinal Muscular Atrophy"]
["SMN","Survival motor neuron protein"]
["SMN (Italics)","Survival motor neuron gene or transcript"]
["SMNDC1","Survival motor neuron domain containing 1","SMNR, SPF30, TDRD16C"]
["SNX27","Sorting nexin-27","MRT1, MY014"]
["SSBP1","Single stranded DNA binding protein 1","Mt-SSB, OPA13, SOSS-B1, SSBP, mtSSB"]
["T-REx","The original T-REx™-293 cell line without integration of gene of interest was selected as control cell line"]
["TC4-2A","Stable cell lines expressing C2A-2B-3-4"]
["TeABC","Triethylammonium bicarbonate"]
["TFA","Trifluoroacetic acid"]
["TL4-2A","Stable cell lines expressing L2A-2B-3-4"]
["TSNAX","Translin-associated protein X","C3PO, TRAX"]
["TUBB2B","Tubulin beta 2B class IIb","CDCBM7, PMGYSA, bA506K6.1"]
["WDR45B","WD repeat domain 45B","NEDSBAS, WDR45L, WIPI-3, WIPI3"]
["YBX3","Y-box-binding protein 3","CSDA, CSDA1, DBPA, ZONAB"]
["ZDHHC6","Zinc finger DHHC-type palmitoyltransferase 6","DHHC-6, DHHC6, ZNF376"]
["ZNF827","Zinc finger protein 827"]

{"sheet":"Supplementary Table S2","index":1,"n_rows":94,"n_cols":5,"rows_kept":94}
["Supplementary Table S2. List of primers."]
["#","primer name","Target sequence","Usage","Primer sequence (5′ to 3′)"]
[1,"5 E1+2A","SMN, exon 1","PCR","GGCACAGGCCAGAGCGA"]
[2,"5 E3-End","SMN, exon 3","PCR","CTTTCCCCAATCTGTGAAGTAGCTA"]
[3,"3 E3-Start","SMN, exon 3","PCR","CAACCGTCTTCTGACCAAATGG"]
[4,"3 E3-RT","SMN, exon 3","RT","TCCATATCCAGTGTAAACCACAAC"]
[5,"3 exon4SMN","SMN, exon 4","PCR","TCACTTTCATCTGTTGAAACTTGG"]
[6,"5 LNCX","pcDNA5/FRT/TO","PCR","GCTCGTTTAGTGAACCGTCAGATC"]
[7,"5 E4+2A","SMN, exons 2A and 4","qPCR","CTGGGACCAGGAAAGAGCG"]
[8,"3 E2B (end)","SMN, exon 2B","qPCR","CTGTTGTAAGGAAGCTGCAGTATTC"]
[9,"hGAPDH-1","GAPDH, exon 8","qPCR","AACAGCGACACCCACTCCTC"]
[10,"hGAPDH-2","GAPDH, exons 8 and 9","qPCR","CATACCAGGAAATGAGCTTGACAA"]
[11,"ABCE1_F","ABCE1","qPCR","ATCTGGTGGTGAACTACAGC"]
[12,"ABCE1_R","ABCE1","qPCR","GTTCCACAACAAAGGCTGTC"]
[13,"ACTN4_F","ACTN4","qPCR","CGCTGGACTTTATTGCCAGC"]
[14,"ACTN4_R","ACTN4","qPCR","CGAACCTAAGGATGATGGTCCA"]
[15,"AGK_F","AGK","qPCR","CTGGCGTCAAAGTTAGCAAG"]
[16,"AGK_R","AGK","qPCR","GAGGCTTGATGAGTCTGAGG"]
[17,"BASP1_F1","BASP1","qPCR","GCTAACTCAGGGGCTGCATAG"]
[18,"BASP1_R","BASP1","qPCR","CCTCGGCCTTCTTGTCTTTCTC"]
[19,"BEX3_F","BEX3","qPCR","ATCAATGATGGGATGGGTGG"]
[20,"BEX3_R","BEX3","qPCR","GACAATTCCTCAACTGCAGC"]
[21,"CD44_F","CD44","qPCR","CTGAGCATCGGATTTGAGACC"]
[22,"CD44_R","CD44","qPCR","GGATGTGAGGATGTACACCC"]
[23,"CELSR3-F","CELSR3","qPCR","CCTCGTTTACCGCACCTTAG"]
[24,"CELSR3-R","CELSR3","qPCR","TGTCTGTAGCAGGCGAAAC"]
[25,"CNDP2_F","CNDP2","qPCR","GAGCCCACTCCCAGAATGAA"]
[26,"CNDP2_R","CNDP2","qPCR","GGCAGGATTCCTTCTCATTGG"]
[27,"CNTN1-F","CNTN1","qPCR","AGAAACAGAGAGCTGACCATAAC"]
[28,"CNTN1-R","CNTN1","qPCR","CATATCGGCCAGTATCAGGATTAG"]
[29,"ELF2_F","ELF2","qPCR","GCAAGATGTGGCAGAAGAAC"]
[30,"ELF2_R","ELF2","qPCR","GAATCCCTCAAGCAGGTAGG"]
[31,"EN2_F","EN2","qPCR","GTCTACTGTACGCGCTACTC"]
[32,"EN2_R","EN2","qPCR","GTCAGGTACCTGTTGGTCTG"]
[33,"ERP44-F","ERP44","qPCR","TGGAGAGGAATTGACAGAAGAAG"]
[34,"ERP44-R","ERP44","qPCR","TGTATGTGCAGAAGAGGATGTC"]
[35,"GFRA1_F","GFRA1","qPCR","GAGTCAAGGTCTGTCAGCAG"]
[36,"GFRA1_R","GFRA1","qPCR","TCTTCTAGGTCGTTCCCACTG"]
[37,"GK_F2","GK","qPCR","GGTGTGGCTTGATCTAAGAACC"]
[38,"GK_R2","GK","qPCR","CTCACATTGTCAAGGAGCCAA"]
[39,"GK3_F2","GK3P","qPCR","AGAAGGTGGTGACCCTAGTG"]
[40,"GK3P_R2","GK3P","qPCR","TTAAGAGACAATTGCTGGGTTG"]
[41,"H2AC20_F2","H2AC20","qPCR","GCAACGACGAGGAACTGAAC"]
[42,"H2AC20_R2","H2AC20","qPCR","GGTTTTCTTTGGTAACAGAACGG"]
[43,"IQGAP2_F","IQGAP2","qPCR","CTGAGAAGGGTCACCGACAA"]
[44,"IQGAP2_R","IQGAP2","qPCR","GCTCATCTTCTGTTGCATCGG"]
[45,"JADE1_F","JADE1","qPCR","GATCACTGCCATGAAGTTGC"]
[46,"JADE1_R","JADE1","qPCR","AGCCTGATGACACGATGTAC"]
[47,"MKI67_F","MKI67","qPCR","CAGCTGGACAGATGTGCTCT"]
[48,"MKI67_R","MKI67","qPCR","TTCAGGTCTTAGGTGCCCAC"]
[49,"NAA15-F","NAA15","qPCR","GGGACCTTTCCTTACTACAGATTC"]
[50,"NAA15-R","NAA15","qPCR","ACCAATCCATGATGCTCTCTG"]
[51,"NAF1_F","NAF1","qPCR","AGAAGGAAGCCAAACAGAGG"]
[52,"NAF1_R","NAF1","qPCR","GCTCTGAAGCAGAGCTATGAG"]
[53,"NAMPT_F","NAMPT","qPCR","CCTGTTCCAGGCTATTCTGTTC"]
[54,"NAMPT_R","NAMPT","qPCR","GACCACAGATACAGGCACTG "]
[55,"NDRG1_a_F","NDRG1","qPCR","ATCTCAGGATGGACCCAAGC"]
[56,"NDRG1_a_R","NDRG1","qPCR","CATGTCATTCACAATGTGCTGG"]
[57,"NOM1_F","NOM1","qPCR","TGATCGACAACAGTCACCATAC"]
[58,"NOM1_R","NOM1","qPCR","TTTCTCCGGATGTCTGTGTTC"]
[59,"OR51E2_F","OR51E2","qPCR","CCAGGAATTGGCCTTTCAGC"]
[60,"OR51E2_R","OR51E2","qPCR","GTGAGGTCACACTGGCAGT"]
[61,"PCDH19-F","PCDH219","qPCR","CACCAGTGCTAACCACATCTAC"]
[62,"PCDH19-R","PCDH219","qPCR","TAAATGGGCTCGGCTATTCAC"]
[63,"PDZD8_F","PDZD8","qPCR","TCACCTCCATCATCGTCAACC "]
[64,"PDZD8_R","PDZD8","qPCR","TCAAATCCTTGCAAGGTCTGG"]
[65,"POLK_F","POLK","qPCR","GCAGCTGTAGAAATGAGGGAC "]
[66,"POLK_R","POLK","qPCR","CTGCACGAACACCAAATCTCC"]
[67,"PPID_F","PPID","qPCR","CTCCAACCCCAGTAACCCTC"]
[68,"PPID_R","PPID","qPCR","GAGAGGTTTCCCAGTCGTGT"]
[69,"RAC3_F","RAC3","qPCR","ACTACTCTGCCAACGTGATG"]
[70,"RAC3_R","RAC3","qPCR","CACTTGGCACGAACATTCTC"]
[71,"REPIN1_F","REPIN1","qPCR","CAGCTCTGCAGTCTCCAGG"]
[72,"REPIN1_R","REPIN1","qPCR","GGAAGTGCCTTCGACAGTGG"]
[73,"RPS3A-a_F","RPS3A-a","qPCR","AAAGGGAGCCAAGAAGAAAGT"]
[74,"RPS3A-a_R","RPS3A-a","qPCR","CACTTCAAACACACGACCCT"]
[75,"SAMD5_F","SAMD5","qPCR","CCAAACTGAAGCTGAAGATCATG"]
[76,"SAMD5_R","SAMD5","qPCR","AAGTACTCTAGGATGCCAGCC"]
[77,"SARS1_F","SARS1","qPCR","CGATGACCTTACTGCAGACG"]
[78,"SARS1_R","SARS1","qPCR","CCAATCTCTCGGAGGTTCTCA"]
[79,"SETD7_F","SETD7","qPCR","GTTCTGCACAGTCACCTACTC"]
[80,"SETD7_R","SETD7","qPCR","GCAAGGCATCATCCACATAATAC"]
[81,"SHTN1_F2","SHTN1","qPCR","CGAAAGTGCAGTGGATGAACT"]
[82,"SHTN1_R2","SHTN1","qPCR","GCTTCTGCTGTCACCTTTCTG"]
[83,"SMNDC1_F","SMNDC1","qPCR","ACAAGTGTATGGCAGTCTGG"]
[84,"SMNDC1_R","SMNDC1","qPCR","AGGTTCAACAGTGGAGTCAC"]
[85,"SSBP1_F","SSBP1","qPCR","GTCTTGAGACAGGTGGAAGG"]
[86,"SSBP1_R","SSBP1","qPCR","GATATGCCACGTCTCTGAGG"]
[87,"TUBB2B_F","TUBB2B","qPCR","GGTCATCAGTGATGAGCATGG"]
[88,"TUBB2B_R","TUBB2B","qPCR","TCCAGATCCACGAGGATGG"]
[89,"ZDHHC6_F","ZDHHC6","qPCR","TGTACACACAGCTTTATCATCGG"]
[90,"ZDHHC6_R","ZDHHC6","qPCR","ACAAGGTGGTAGCAAATGCAG "]
[91,"ZNF827_F","ZNF827","qPCR","ATGTGTCAGTCAAAGCAGCC"]
[92,"ZNF827_R","ZNF827","qPCR","GAGTCCTGGATGTCAACCTC"]

{"sheet":"Supplementary Table S3","index":2,"n_rows":26831,"n_cols":17,"rows_kept":4500,"cut":true,"merged":[[1,2,1,6],[1,7,1,11],[1,12,1,16]],"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
["Supplementary Table S3. Results of RNA-seq analysis."]
[null,null,"TC4-2A/Control",{"$nulls":4},"TL4-2A/Control",{"$nulls":4},"TC4-2A/TL4-2A"]
["Ensembl Gene ID","baseMean","log2FoldChange","lfcSE","stat","pvalue","padj","log2FoldChange","lfcSE","stat","pvalue","padj","log2FoldChange","lfcSE","stat","pvalue","padj"]
["ENSG00000134531",712.222626592346,4.59528663941335,0.10452239914156,43.9646111948666,0,0,0.316420832895725,0.134651333642968,2.34992721078222,0.0187770826126853,0.0590064558617733,4.27886580651763,0.101670845695461,42.0854747223632,0,0]
["ENSG00000126016",3334.5917546847,-3.24333140433585,0.0497807129281329,-65.1523695335211,0,0,0.33464502242019,0.0338955190630835,9.87283958677183,5.4596734182951e-23,2.75408810588029E-21,-3.57797642675604,0.0496489742580228,-72.065465202997,0,0]
["ENSG00000165194",844.428728657957,-4.01883357458328,0.109106306702964,-36.834108824931,5.25423708871586e-297,3.33206202042731E-293,0.213724440951153,0.0560567449597999,3.81264451056553,0.000137487793203183,8.4471853414384E-4,-4.23255801553443,0.109095794122261,-38.7967111801864,0,0]
["ENSG00000198626",3451.83400726967,-1.6545664457765,0.0451440728899112,-36.6508013092072,4.44344211352979e-294,2.11341215524761e-290,0.734641490464233,0.0396690828850245,18.5192456451159,1.44446754126987e-76,7.99693342535532e-74,-2.38920793624074,0.0444967479289041,-53.6939899531121,0,0]
["ENSG00000184613",1486.24307291506,-1.31955851955482,0.0515669501504426,-25.5892294522968,2.01060795671892e-144,7.65036327531549e-141,0.277671499969062,0.0454464631064014,6.1098594035572,9.97189489633368e-10,1.55951703728326e-08,-1.59723001952389,0.051390208885026,-31.0804344675331,4.42793782826327e-212,1.08180056066757e-208]
["ENSG00000198814",2293.78069985045,-1.02896019613259,0.0425546342679303,-24.1797447877029,3.63437883151882E-129,1.15240095449409E-125,-0.637743152142188,0.0419752414898953,-15.1933170484728,3.91591975475863e-52,9.52945527133296e-50,-0.391217043990401,0.0444241480778431,-8.80640509537477,1.29223415716584E-18,4.13366883826619e-17]
["ENSG00000182463",269.019642269287,-4.12746355916367,0.171302133095447,-24.0946419322397,2.84485185972918e-128,7.73190094733538e-125,-0.905497693861313,0.0975794255568778,-9.2795964794188,1.70121617213768E-20,7.00249667880836e-19,-3.22196586530236,0.175653197478298,-18.3427680882406,3.77097762761448e-75,1.71404087748198E-72]
["ENSG00000148773",24600.8631155143,-0.639007250133758,0.0271381342220687,-23.5464695142571,1.36438698469302e-122,3.24468279797308e-119,0.0208396388778606,0.026955689930105,0.773107233830668,0.439458920341891,0.623354969957159,-0.659846889011618,0.0271986124116957,-24.2603144242711,5.14645945413473e-130,5.91691470770961e-127]
["ENSG00000278771",19131.3831800975,-1.63810239662095,0.0719465062674004,-22.7683383336599,9.44597188633123e-115,1.99677350152724e-111,0.51288091369021,0.0714406129053562,7.17912253034095,7.01602464633359e-13,1.53984009705706e-11,-2.15098331031116,0.0719046744742636,-29.9143738016789,1.27960755165176E-196,2.50099295970336e-193]
["ENSG00000143341",382.669206798396,-1.98285039277421,0.0955203826996589,-20.7584008431877,1.0293538983428E-95,1.95834579159718E-92,-1.47169328301618,0.0918484247490625,-16.0230650339074,8.81937017132992e-58,2.5364279538195e-55,-0.51115710975803,0.105658005824448,-4.83784551648005,1.31254090672442e-06,1.29629166356386E-5]
["ENSG00000277586",2946.76435112901,-0.840242556009276,0.0405732862763841,-20.7092555994988,2.85839350471368e-95,4.9437214933798e-92,-0.718470875042934,0.0407976620490765,-17.6105894053112,2.04306521066148e-69,9.23340389593846e-67,-0.121771680966342,0.0423258528104701,-2.87700478267079,0.00401469510442372,0.017914889455699]
["ENSG00000102452",158.292731891289,-5.0410280673886,0.245966338843983,-20.4947883969853,2.39626004616303e-93,3.7990706148543E-90,-4.07383258396056,0.200594414765003,-20.3088036560393,1.07490753369494E-91,8.81623234580534e-89,-0.967195483428037,0.297207871975823,-3.25427276538192,1.13683067999426E-3,0.00601824367293819]
["ENSG00000023318",858.214208372969,-1.27595472352532,0.0632576952587515,-20.1707431531628,1.76959589673416E-90,2.5897355334898e-87,-0.012148960108137,0.0568452652799776,-0.213719824303752,0.830765550951116,0.907424690780355,-1.26380576341718,0.06405362784025,-19.7304322335828,1.18155795386812E-86,6.59815720238639e-84]
["ENSG00000176788",3089.08461846556,-0.784020598716988,0.0397986174359364,-19.6996943418706,2.16925661253641e-86,2.94786478953609e-83,-0.150749667718206,0.038819345204732,-3.88336451640689,1.03020946136046E-4,0.000651828243480784,-0.633270930998782,0.0404189803377624,-15.6676622148019,2.5166715639584e-55,5.5895847406326e-53]
["ENSG00000074755",3418.21118423599,0.815075905557165,0.0415954722409014,19.5953035666149,1.69571267019136e-85,2.15072890335937e-82,0.283387738615122,0.0427515639941936,6.62871044094692,3.38632102199648e-11,6.21079522776846e-10,0.531688166942043,0.0414387926516307,12.8306867290237,1.10381422050097e-37,1.0951293878016E-35]
["ENSG00000261150",901.038096967597,-1.26364743221033,0.0670900436525186,-18.8350962887306,3.89418233568372e-79,4.63042618352392e-76,-0.811582965069845,0.0657426196355464,-12.3448528453684,5.19291008353791e-35,5.66487654186931e-33,-0.452064467140482,0.0706978560424438,-6.39431649623268,1.6126708885801E-10,2.56883883596561E-9]
["ENSG00000187164",2388.09813451161,-0.7425532082695669,0.0395070482219029,-18.7954616122875,8.22613272255011e-79,9.20601029685387e-76,-0.086517260386802,0.0381734052734715,-2.26642762852825,0.0234252135784426,0.0707806460219146,-0.656035947882765,0.0401702103403486,-16.3314043497506,5.9010216369928e-60,1.51757194598716E-57]
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{"sheet":"Supplementary Table S4","index":3,"n_rows":2549,"n_cols":15,"rows_kept":2549,"merged":[[1,3,1,6],[1,7,1,10],[1,11,1,14]]}
["Supplementary Table S4. Results of proteomics analysis."]
[{"$nulls":3},"TC4-2A/Control",{"$nulls":3},"TL4-2A/Control",{"$nulls":3},"TC4-2A/TL4-2A"]
["Accession","Gene Symbol","Ensembl Gene ID","FC","log2(FC)","p value","-LOG10(p)","FC","log2(FC)","p value","-LOG10(p)","FC","log2(FC)","p value","-LOG10(p)"]
["B1AK53","ESPN","ENSG00000187017",{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},1.2303,0.29903,0.37003,0.43176]
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["O75351","VPS4B","ENSG00000119541",{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},2.3311,1.221,0.069534,1.1578]
["O75376","NCOR1","ENSG00000141027",{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},0.91274,-0.13173,0.97365,0.011599]
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["Q9NX14","NDUFB11","ENSG00000147123",0.82689,-0.27423,0.43045,0.36607,0.53765,-0.89525,0.017165,1.7653,2.045,1.0321,0.076053,1.1189]
["Q86UP6","CUZD1","ENSG00000138161",0.92644,-0.11024,0.46608,0.33154,0.53652,-0.89829,0.30592,0.5144,2.5827,1.3689,0.63297,0.19862]
["Q15084","PDIA6","ENSG00000143870",0.78426,-0.35059,0.42724,0.36932,0.53648,-0.89841,0.10761,0.96815,1.48,0.56558,0.35709,0.44722]
["P57721","PCBP3","ENSG00000183570",0.22143,-2.1751,7.8309E-3,2.1062,0.53275,-0.90848,0.19512,0.7097,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["P04080","CSTB","ENSG00000160213",0.49825,-1.0051,0.11102,0.95459,0.52986,-0.91631,0.069843,1.1559,0.94254,-0.085371,0.79801,0.097994]
["P31350","RRM2","ENSG00000171848",1.0529,0.074431,0.72724,0.13832,0.52354,-0.93362,0.0042108,2.3756,2.0361,1.0258,0.009311,2.031]
["Q9P1Y5","CAMSAP3","ENSG00000076826",0.34342,-1.542,0.081116,1.0909,0.5186,-0.94729,0.21687,0.6638,0.61134,-0.70995,0.35742,0.44682]
["P09234","SNRPC","ENSG00000124562",0.66461,-0.58942,0.19648,0.70668,0.51819,-0.94845,0.11841,0.92661,1.2845,0.3612,0.5128,0.29005]
["Q13885","TUBB2A","ENSG00000137267",0.97359,-0.038615,0.86278,0.0641,0.51356,-0.96139,0.063045,1.2003,1.9114,0.9346,0.14148,0.84931]
["Q9BVA1","TUBB2B","ENSG00000137285",0.52368,-0.93324,0.0097224,2.0122,0.51282,-0.96348,0.016539,1.7815,1.0247,0.035189,0.82889,0.081505]
["P30405","PPIF","ENSG00000108179",0.64793,-0.62609,0.25392,0.59531,0.49957,-1.0012,0.13243,0.87802,1.2995,0.37793,0.27627,0.55867]
["Q8NBU5","ATAD1","ENSG00000138138; ENSG00000283024",0.66153,-0.59613,0.11408,0.94281,0.49492,-1.0147,0.005695,2.2445,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["P68133","ACTA1","ENSG00000143632",0.90669,-0.14132,0.58049,0.2362,0.47574,-1.0718,0.22049,0.65661,1.8732,0.90547,0.53353,0.27284]
["Q6DN03","H2BC20P","",0.075965,-3.7185,0.55456,0.25605,0.47107,-1.086,0.8452,0.073038,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["Q53EL6","PDCD4","ENSG00000150593",0.61723,-0.69613,0.32183,0.49237,0.47033,-1.0883,0.13156,0.88086,1.3284,0.40973,0.48069,0.31814]
["Q53F19","NCBP3","ENSG00000074356",0.85807,-0.22084,0.71963,0.14289,0.46543,-1.1034,0.15824,0.80067,2.0035,1.0025,0.26054,0.58412]
["Q96B49","TOMM6","ENSG00000214736",1.1585,0.21228,0.84705,0.072091,0.45522,-1.1354,0.52583,0.27915,3.1235,1.6432,0.76019,0.11908]
["P62314","SNRPD1","ENSG00000167088",0.62815,-0.67081,0.2514,0.59963,0.45363,-1.1404,0.13244,0.87799,1.4084,0.49408,0.50453,0.29711]
["P21912","SDHB","ENSG00000117118",0.81551,-0.29422,0.53318,0.27313,0.44079,-1.1818,0.084111,1.0751,1.8803,0.91093,0.21267,0.6723]
["Q96K75","ZNF514","ENSG00000144026",{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},0.4382,-1.1903,0.13889,0.85734,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["Q8N386","LRRC25","ENSG00000175489",0.46884,-1.0928,0.085265,1.0692,0.4248,-1.2351,0.096769,1.0143,1.1772,0.23531,0.63632,0.19632]
["P20929","NEB","ENSG00000183091",1.2415,0.31203,0.94261,0.025668,0.41584,-1.2659,0.89579,0.047795,3.3731,1.7541,0.78335,0.10605]
["Q92782","DPF1","ENSG00000011332",0.68622,-0.54325,0.48839,0.31124,0.41045,-1.2847,0.33733,0.47195,1.7375,0.797,0.89835,0.046554]
["P31512","FMO4","ENSG00000076258",0.4958,-1.0122,0.29904,0.52428,0.40389,-1.308,0.0073159,2.1357,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["O00154","ACOT7","ENSG00000097021",0.76616,-0.38428,0.40859,0.38871,0.39338,-1.346,0.055109,1.2588,1.9513,0.96443,0.43731,0.35921]
["Q6UY14","ADAMTSL4","ENSG00000143382",0.55764,-0.84261,0.023434,1.6302,0.38738,-1.3682,0.0099066,2.0041,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["Q4ZHG4","FNDC1","ENSG00000164694",0.70601,-0.50224,0.35665,0.44776,0.38552,-1.3751,0.35969,0.44407,2.2147,1.1471,0.51033,0.29215]
["P07205","PGK2","ENSG00000170950",0.36546,-1.4522,0.26479,0.5771,0.37746,-1.4056,0.15927,0.79788,1.0571,0.080117,0.70553,0.15148]
["Q8TDG2","ACTRT1","ENSG00000123165",0.32527,-1.6203,0.05366,1.2703,0.35994,-1.4742,0.0084621,2.0725,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["Q92597","NDRG1","ENSG00000104419",0.55086,-0.86023,0.020282,1.6929,0.3463,-1.5299,0.00040373,3.3939,1.757,0.81312,0.088188,1.0546]
["O60543","CIDEA","ENSG00000176194",0.68975,-0.53586,0.63701,0.19586,0.34621,-1.5303,0.20631,0.68549,2.0983,1.0692,0.40907,0.3882]
["Q9HBX9","RXFP1","ENSG00000171509",0.34905,-1.5185,0.084484,1.0732,0.344,-1.5395,0.05899,1.2292,1.0779,0.10824,0.87858,0.056221]
["Q7Z6G8","ANKS1B","ENSG00000185046",0.15937,-2.6495,0.098259,1.0076,0.34123,-1.5512,0.25967,0.58557,0.45021,-1.1513,0.5553,0.25547]
["Q9Y305","ACOT9","ENSG00000123130",0.57504,-0.79827,0.087996,1.0555,0.32251,-1.6326,2.1189E-3,2.6739,2.4595,1.2984,0.073462,1.1339]
["Q07021","C1QBP","ENSG00000108561",0.79865,-0.32436,0.46432,0.33318,0.31935,-1.6468,0.18042,0.74371,2.5653,1.3591,0.6543,0.18422]
["Q8N9U0","TC2N","ENSG00000165929; ENSG00000276776",0.73458,-0.445,0.56975,0.24431,0.30689,-1.7042,0.29007,0.53749,2.4964,1.3198,0.50848,0.29373]
["Q16401","PSMD5","ENSG00000095261",0.26924,-1.893,0.36183,0.4415,0.25154,-1.9911,0.46972,0.32816,1.7838,0.83498,0.98508,0.0065288]
["Q96L92","SNX27","ENSG00000143376",0.46184,-1.1145,0.018924,1.723,0.25115,-1.9934,0.0017617,2.7541,1.8814,0.91183,0.045527,1.3417]
["P09104","ENO2","ENSG00000111674",0.76653,-0.38358,0.51398,0.28906,0.231,-2.114,0.082017,1.0861,3.3973,1.7644,0.4602,0.33706]
["Q52WX2","SBK1","ENSG00000188322",0.29608,-1.7559,0.1912,0.71851,0.15497,-2.69,0.061198,1.2133,{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"}]
["Q86YW9","MED12L","ENSG00000144893",{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},{"$error":"#N/A"},0.14027,-2.8337,0.11952,0.92257,13.215,3.7242,0.21459,0.6684]
["P05386","RPLP1","ENSG00000137818",1.1164,0.15889,0.80762,0.092794,0.14027,-2.8337,0.4555,0.34151,8.7245,3.1251,0.81692,0.087818]
["P63261","ACTG1","ENSG00000184009",1.6155,0.69194,0.97606,0.010522,0.086332,-3.534,0.36959,0.43228,22.741,4.5072,0.46691,0.33077]

{"sheet":"Supplementary Table S5","index":4,"n_rows":136,"n_cols":11,"rows_kept":136}
["Supplementary Table S5. Summery of expression profiles of representative candidates in different analyses."]
[]
["Supplementary Table S5A. Summary of validated candidates significantly expressed in both proteomics and RNA-seq analyses. "]
["Gene Symbol","Ensembl Gene ID","Chromosomal Location","RNA-seq TC4-2A/Control","RNA-seq TL4-2A/Control","qCPR TC4-2A/Ctonrol"," qPCR  TL4-2A/Control"," Proteomics TC4-2A/Control"," Proteomics TL4-2A/Control","WB TC4-2A/Control","WB TL4-2A/Control"]
["CNDP2","ENSG00000133313","chr18:74496363‑74523454","+++","+","+++","+","++++","+","++++","+++"]
["NAMPT","ENSG00000105835","chr7:106248298‑106285888","+","+","++","++","+++","+","+++","++"]
["PPID","ENSG00000171497","chr4:158709127‑158723396","++","++","++","++","+++","++","N/A","N/A"]
["ABCE1","ENSG00000164163","chr4:145098311‑145129524","+++","+","+++","+","+++","+","N/A","N/A"]
["NAA15","ENSG00000164134","chr4:139301505‑139391384","+++","+","+++","++","++","+","N/A","N/A"]
[]
["Supplementary Table S5B. Summary of validated candidates significantly expressed in RNA-seq analysis. "]
["Gene Symbol","Ensembl Gene ID","Chromosomal Location","RNA-seq TC4-2A/Control","RNA-seq TL4-2A/Control","qCPR TC4-2A/Ctonrol"," qPCR  TL4-2A/Control"," Proteomics TC4-2A/Control"," Proteomics TL4-2A/Control","WB TC4-2A/Control","WB TL4-2A/Control"]
["NAF1","ENSG00000145414","chr4:163103929‑163166890","+++","+","++++","+","N/A","N/A","N/A","N/A"]
["CELSR3","ENSG00000008300","chr3:48636463‑48662886","++++","+","++++","++","N/A","N/A","N/A","N/A"]
["RPS3A","ENSG00000145425","chr4:151099628‑151104642","+++","+","++++","+","+","+++","N/A","N/A"]
["SSBP1","ENSG00000106028","chr7:141738321‑141750488","+++","+","+++","+","N/A","N/A","N/A","N/A"]
["RAC3","ENSG00000169750","chr17:82031678‑82034204","+++","+","+++","+","N/A","N/A","N/A","N/A"]
["ELF2","ENSG00000109381","chr4:139057220‑139177915","+++","+","+++","+","N/A","N/A","N/A","N/A"]
["EN2","ENSG00000164778","chr7:155458129‑155464831","+++","+","+++","+++","N/A","N/A","N/A","N/A"]
["ZNF827","ENSG00000151612","chr4:145757627‑145938823","+++","+","+++","+","N/A","N/A","N/A","N/A"]
["AGK","ENSG00000006530; ENSG00000262327","chr7:141551410‑141655244","+++","+","+++","+","+","+","N/A","N/A"]
["SMN1","ENSG00000172062","chr5:70924941-70966375","+++","+","+","+","++","++","+","+"]
["PCDH19","ENSG00000165194","ChrX:100291644‑100410273","++++","+","++++","+","N/A","N/A","N/A","N/A"]
["CD44","ENSG00000026508","Chr11:35139171‑35232402","++++","+","++++","+","N/A","N/A","N/A","N/A"]
["ERP44","ENSG00000023318","Chr9:99979185‑100099000","++++","+","++++","+","+++","+","N/A","N/A"]
["CNTN1","ENSG00000018236","Chr12:40692439‑41072415","++++","+","++++","++","N/A","N/A","N/A","N/A"]
["BEX3","ENSG00000166681","ChrX:103376323‑103378164","+++","+","++","+","N/A","+","N/A","N/A"]
["ZDHHC6","ENSG00000023041","Chr10:112424412‑112447572","+++","+","++","+","N/A","N/A","N/A","N/A"]
["POLK","ENSG00000122008","Chr5:75510774‑75609991","+++","+","++","+","N/A","N/A","N/A","N/A"]
["SMNDC1","ENSG00000119953","Chr10:110290730‑110304920","+++","+","+","+","+++","++","N/A","N/A"]
[]
["Supplementary Table S5C. Summary of candidates significantly altered in both proteomics and RNA-seq analyses . "]
["Gene Symbol","Ensembl Gene ID","Chromosomal Location","RNA-seq TC4-2A/Control","RNA-seq TL4-2A/Control","qCPR TC4-2A/Ctonrol"," qPCR  TL4-2A/Control"," Proteomics TC4-2A/Control"," Proteomics TL4-2A/Control","WB TC4-2A/Control","WB TL4-2A/Control"]
["NTMT1","ENSG00000148335","chr9:129626443‑129635492","+","+","+","+++","+++","+","N/A","N/A"]
["MRPL39","ENSG00000154719","chr21:25585655‑25607481","+","+","++","++","+++","N/A","N/A","N/A"]
["UTP15","ENSG00000164338","chr5:73565742‑73583380","+","+","N/A","N/A","+++","N/A","N/A","N/A"]
["MTPN","ENSG00000105887","chr7:135926760‑135977359","++","+","N/A","N/A","+++","++","N/A","N/A"]
["DNAJC2","ENSG00000105821","chr7:103312473‑103344666","++","+","N/A","N/A","+++","++","N/A","N/A"]
["CSK","ENSG00000103653","chr15:74782079‑74803197","+","+","N/A","N/A","+++","++","N/A","N/A"]
["ARF5","ENSG00000004059","chr7:127588410‑127591700","+","++","N/A","N/A","++","+","N/A","N/A"]
["COPG2","ENSG00000158623","chr7:130546786‑130668705","+","+","N/A","N/A","++","+","N/A","N/A"]
["MRPS2","ENSG00000122140","chr9:135500681‑135504671","+","+","N/A","N/A","++","+","N/A","N/A"]
["YBX3","ENSG00000060138","chr12:10699088‑10723323","+","+","N/A","N/A","+","++","N/A","N/A"]
["ATP1A1","ENSG00000163399","chr1:116373243‑116404774","+","+","+","+","+","+","N/A","N/A"]
["MYH9","ENSG00000100345","chr22:36281279‑36387967","+","+","N/A","N/A","++","+","N/A","N/A"]
["ACTR2","ENSG00000138071","chr2:65227830‑65271253","+","+","N/A","N/A","++","+","N/A","N/A"]
["MLEC","ENSG00000110917","chr12:120687148‑120701859","+","+","N/A","N/A","++","+","N/A","N/A"]
["KCTD12","ENSG00000178695","chr13:76880174‑76886405","+++","+","N/A","N/A","+++","++","N/A","N/A"]
["PRKAR2B","ENSG00000005249; ENSG00000284096","chr7:107044704‑107161811","++","+","N/A","N/A","+++","+","N/A","N/A"]
["UBE2V2","ENSG00000169139","chr8:48008430‑48064708","+","+","N/A","N/A","++","+","N/A","N/A"]
[]
["Supplementary Table S5D. Summary of candidates significantly altered at opposite directions in proteome and transcriptome . "]
["Gene Symbol","Ensembl Gene ID",null,"RNA-seq TC4-2A/Control","RNA-seq TL4-2A/Control","qCPR TC4-2A/Ctonrol"," qPCR  TL4-2A/Control"," Proteomics TC4-2A/Control"," Proteomics TL4-2A/Control","WB TC4-2A/Control","WB TL4-2A/Control"]
["OR51E2","ENSG00000167332","Chr11:4680171‑4697853","++++","+","++++","++","+++","N/A","N/A","N/A"]
["RPL19","ENSG00000108298","chr17:39200282‑39204732","+","+","N/A","N/A","+","+","N/A","N/A"]
["PDXK","ENSG00000160209","chr21:43719096‑43762307","+","+","N/A","N/A","++","++","N/A","N/A"]
["GNB2","ENSG00000172354","chr7:100673822‑100679165","+","+","+","+++","+++","++","N/A","N/A"]
["DNAJB11","ENSG00000090520","chr3:186570719‑186585793","+","+","N/A","N/A","+++","++","N/A","N/A"]
["GK3","ENSG00000229894","chr4:165277806‑165279704","N/A","N/A","+++","+","++++","+++","N/A","N/A"]
[]
["Supplementary Table S5E. Summary of validated candidates significantly altered at the same directions in TC4-2A and TL4-2A cells . "]
["Gene Symbol","Ensembl Gene ID","Chromosomal Location","RNA-seq TC4-2A/Control","RNA-seq TL4-2A/Control","qCPR TC4-2A/Ctonrol"," qPCR  TL4-2A/Control"," Proteomics TC4-2A/Control"," Proteomics TL4-2A/Control","WB TC4-2A/Control","WB TL4-2A/Control"]
["TUBB2B","ENSG00000137285","Chr6:3224277‑3227653","+++","++++","++++","++++","+++","+++","++","N/A"]
["NDRG1","ENSG00000104419","Chr8:133237175‑133297252","+++","++++","++++","++++","+++","++++","N/A","N/A"]
["SHTN1","ENSG00000187164","Chr10:116881477‑117126586","+++","+","+++","++","++++","++","N/A","N/A"]
["MKI67","ENSG00000148773","Chr10:128096659‑128126423","+++","+","++++","++","+++","+++","N/A","N/A"]
["BASP1","ENSG00000176788","Chr5:17216823‑17276834","+++","+","+++","+","+++","+","N/A","N/A"]
["IQGAP2","ENSG00000145703","chr5:76403285‑76708132","+","+","++","+","++++","N/A","+","N/A"]
["H2AC20","ENSG00000184260","chr1:149886917‑149887411","+","+","+","++","++++","N/A","N/A","N/A"]
["NOM1","ENSG00000146909","chr7:156949712‑156973176","+++","+","+++","+","N/A","N/A","N/A","N/A"]
["SETD7","ENSG00000145391","chr4:139492974‑139556219","+++","+","+++","+","N/A","N/A","N/A","N/A"]
["REPIN1","ENSG00000214022","chr7:150368096‑150374039","+++","+","++","+","N/A","N/A","N/A","N/A"]
["PDZD8","ENSG00000165650","Chr10:117277274‑117375440","+++","+","++","+","N/A","N/A","N/A","N/A"]
["ACTN1","ENSG00000072110","chr14:68874142‑68979440","+","+","++","++","+++","+++","+","++"]
["RPS7","ENSG00000171863","chr2:3575324‑3580919","+","+++","+","++++","+++","+++","N/A","N/A"]
["JADE1","ENSG00000077684","chr4:128809700‑128875224","+++","+","++++","++","N/A","N/A","N/A","N/A"]
["GFRA1","ENSG00000151892","Chr10:116056925‑116274705","+++","+","+++","++","N/A","N/A","N/A","N/A"]
["SAMD5","ENSG00000203727","Chr6:147508690‑147954680","++++","+","++++","+++","N/A","N/A","N/A","N/A"]
["IRS4","ENSG00000133124","chrX:108719948‑108736409","++","+++","N/A","N/A","++","++","N/A","N/A"]
["FARSB","ENSG00000116120","chr2:222566898‑222656092","+","++","N/A","N/A","++","++","N/A","N/A"]
["STUB1","ENSG00000103266","chr16:680409‑682801","++","++","N/A","N/A","++","++","N/A","N/A"]
["RBBP7","ENSG00000102054","chrX:16844653‑16869886","++","++","N/A","N/A","++","++","N/A","N/A"]
["TPM4","ENSG00000167460","chr19:16067537‑16103002","++","+","N/A","N/A","++","+","N/A","N/A"]
["TAGLN2","ENSG00000158710","chr1:159918776‑159924551","++","+++","N/A","N/A","++","+","N/A","N/A"]
["VIM","ENSG00000026025","chr10:17228241‑17237593","++","+","N/A","N/A","++","+","N/A","N/A"]
["EPPK1","ENSG00000261150","chr8:143857323‑143878467","++++","+++","N/A","N/A","+++","+++","N/A","N/A"]
["OAT","ENSG00000065154","chr10:124397302‑124418923","++","++","N/A","N/A","+++","+++","N/A","N/A"]
["RACK1","ENSG00000204628","chr5:181236896‑181243906","+","+","N/A","N/A","+","+","N/A","N/A"]
["ATP2A2","ENSG00000174437","chr12:110281115‑110351090","+","+","N/A","N/A","++","+","N/A","N/A"]
["SAMHD1","ENSG00000101347","chr20:36890573‑36951843","+","+","N/A","N/A","+++","++","N/A","N/A"]
["IPO9","ENSG00000198700","chr1:201829156‑201884291","+","+","+","+","+++","++","N/A","N/A"]
["GET4","ENSG00000239857","chr7:876553‑896436","++","+++","N/A","N/A","++","N/A","N/A","N/A"]
["SARS1","ENSG00000031698","chr1:109213893‑109238182","+","+","++","+","++","+","N/A","N/A"]
["PUS1","ENSG00000177192","chr12:131929275‑131945896","+","++","N/A","N/A","++","+","N/A","N/A"]
["SUCLA2","ENSG00000136143","chr13:47745735‑48001291","++","++","N/A","N/A","++","++","N/A","N/A"]
["SPART","ENSG00000133104","chr13:36301639‑36370180","++","++","N/A","N/A","++","+","N/A","N/A"]
["EMG1","ENSG00000126749","chr12:6970912‑6979936","+","++","N/A","N/A","+","+","N/A","N/A"]
["ITGB1","ENSG00000150093","chr10:32900317‑32958230","+","++","N/A","N/A","++","+","N/A","N/A"]
["FDFT1","ENSG00000079459","chr8:11802738‑11838783","++","+","N/A","N/A","++","+","N/A","N/A"]
["ME1","ENSG00000065833","chr6:83210401‑83431051","+","+","N/A","N/A","++","++","N/A","N/A"]
["PPP1R14C","ENSG00000198729","chr6:150143043‑150250392","+","++","N/A","N/A","+++","+","N/A","N/A"]
["EPCAM","ENSG00000119888","chr2:47369310‑47387020","++","+++","N/A","N/A","+++","++","N/A","N/A"]
["ADD3","ENSG00000148700","chr10:110007963‑110135565","++","+","N/A","N/A","+++","+","N/A","N/A"]
["RPL12","ENSG00000197958","chr9:127447673‑127451406","+","+","N/A","N/A","+","+","N/A","N/A"]
["DDX17","ENSG00000100201","chr22:38483437‑38506311","+","+","N/A","N/A","+","++","N/A","N/A"]
["NUP50","ENSG00000093000","chr22:45163924‑45188017","+","+","N/A","N/A","++","+","N/A","N/A"]
["DAZAP1","ENSG00000071626","chr19:1407585‑1435684","+","+","N/A","N/A","+++","+","N/A","N/A"]
["ACTN4","ENSG00000130402; ENSG00000282844","chr19:38647649‑38731589","+","+","+","+","++","++","N/A","N/A"]
["ECI1","ENSG00000167969","chr16:2239401‑2251587","+","+","+","++","+++","+++","N/A","N/A"]
["HNRNPL","ENSG00000104824; ENSG00000282947","chr19:38836369‑38849986","+","+","+","++","+","++","N/A","N/A"]
["H1-10","ENSG00000184897","chr3:129314770‑129316286","+","+","+","+","+++","++++","++","+"]
["GK","ENSG00000198814","chrX:30653423-30731462","++++","+++","++++","+++","N/A","N/A","N/A","N/A"]
["ABCF1","ENSG00000204574; ENSG00000206490; ENSG00000225989; ENSG00000231129; ENSG00000232169; ENSG00000236149; ENSG00000236342","chr6:30571441‑30591522","+","+","N/A","N/A","+","+","N/A","N/A"]
[]
["Supplementary Table S5F. Summary of representative candidates significantly altered in proteome of TC4-2A. "]
["Gene Symbol","Ensembl Gene ID","Chromosomal Location","RNA-seq TC4-2A/Control","RNA-seq TL4-2A/Control","qCPR TC4-2A/Ctonrol"," qPCR  TL4-2A/Control"," Proteomics TC4-2A/Control"," Proteomics TL4-2A/Control","WB TC4-2A/Control","WB TL4-2A/Control"]
["TSNAX","ENSG00000116918","chr1:231528668‑231566524","+","+","+","++","++++","++++","++","N/A"]
["GET3","ENSG00000198356","chr19:12737496‑12748323","+","+","+","++","++++","N/A","++","+"]
["RBBP9","ENSG00000089050","chr20:18486539‑18497225","+","+","+","+","++++","N/A","N/A","N/A"]
["SACM1L","ENSG00000211456","chr3:45689395‑45745409","+","+","+","+","++++","+++","N/A","N/A"]
["RO60","ENSG00000116747","chr1:193069015‑193084866","+","+","+","++","+++","++++","N/A","N/A"]
["UNG","ENSG00000076248","chr12:109097596‑109110992","+","+","+","++","+++","+++","N/A","N/A"]
["WDR75","ENSG00000115368","chr2:189441473‑189475552","+","++","+","++","+++","N/A","N/A","N/A"]
["TMEM109","ENSG00000110108","chr11:60914157‑60923443","+","+","+","+","+++","+","N/A","N/A"]
["NAA50","ENSG00000121579","chr3:113716457‑113746249","+","+","+","+","+++","+","N/A","N/A"]
["CIAO1","ENSG00000144021","chr2:96266224‑96274173","+","+","+","++","+++","++","N/A","N/A"]
["SLFN11","ENSG00000172716","chr17:35350304‑35373607","+","+","N/A","N/A","+++","++","N/A","N/A"]
["BAX","ENSG00000087088","chr19:48954928‑48961798","+","+","N/A","N/A","++","+","N/A","N/A"]
["RPS16","ENSG00000105193","chr19:39433136‑39435949","+","+","+","+","++","++","N/A","N/A"]
["MIF","ENSG00000240972; ENSG00000276701","chr22:23894382‑23895223","+","+","+","+","++","+","N/A","N/A"]
["PCBP3","ENSG00000183570","chr21:45643724‑45942450","++","+","+","++","++++","+++","N/A","N/A"]
["SNX27","ENSG00000143376","chr1:151612028‑151699091","+","+","+","+","++++","++++","+","N/A"]
["WDR45B","ENSG00000141580","chr17:82614561‑82648444","+","+","+","+","++++","++","++","N/A"]
["ANKFY1","ENSG00000185722","chr17:4163820‑4263979","+","++","+","+","+++","+","N/A","N/A"]
["ME2","ENSG00000082212","chr18:50879117‑50954257","+","+","+","++","+++","++","+","+"]
["Note: Absolute (fold change) <1.2, +; ≥1.2, ++; ≥1.5, +++; ≥ 2, ++++. Green \"+\": upregulated, p or adj. p <0.05; red \"+\":: downregulated. The cell is highlighted in yellow when p value or adj. p value <0.05. "]