{"text_format":"3","workbook":"xls","n_sheets":5,"sheets":["Function_anno.stat","Integrated_Function.anno","KOG_Annotation","GO_Annotation","KEGG_Annotation"],"cells_cut":1,"read":"whole","date_system":"1900","formulas":"cached_only"}

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["#Anno_Database","Annotated_Number","300<=length<1000","length>=1000"]
["COG_Annotation",12080,3369,6294]
["GO_Annotation",28811,10749,11057]
["KEGG_Annotation",17285,6407,6447]
["KOG_Annotation",24578,8544,9844]
["Pfam_Annotation",27174,8882,13191]
["Swissprot_Annotation",29332,10676,12639]
["eggNOG_Annotation",40888,14956,15978]
["nr_Annotation",43720,16865,16444]
["All_Annotated",46595,17819,16524]

{"sheet":"Integrated_Function.anno","index":1,"n_rows":46596,"n_cols":12,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0},"flags":["formulas_cached_only"]}
["c47156.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: phloem development (GO:0010088);; Biological Process: xylem development (GO:0010089);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Myb family transcription factor APL OS=Arabidopsis thaliana OX=3702 GN=APL PE=1 SV=2","K","Transcription","Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]"]
["c2039.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Myb family transcription factor PHL5 OS=Arabidopsis thaliana OX=3702 GN=PHL5 PE=2 SV=1","S","Function unknown","myb family transcription factor PHL5 isoform X2 [Herrania umbratica]"]
["c45563.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein folding (GO:0006457);; Molecular Function: unfolded protein binding (GO:0051082);; ","K09510|3.19908e-82|gra:105786555|K09510 DnaJ homolog subfamily B member 4 | (RefSeq) dnaJ homolog subfamily B member 13","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ domain;; DnaJ C terminal domain;; MYB-CC type transfactor, LHEQLE motif;; Myb-like DNA-binding domain","Chaperone protein dnaJ 3 OS=Arabidopsis thaliana OX=3702 GN=ATJ3 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein COLO4_14530 [Corchorus olitorius]"]
["c44253.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif;; Myb-like DNA-binding domain","Myb family transcription factor PHL6 OS=Arabidopsis thaliana OX=3702 GN=PHL6 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107958474 [Gossypium hirsutum]"]
["c44441.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1","K","Transcription","PREDICTED: protein PHR1-LIKE 2-like [Gossypium arboreum]"]
["c50149.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1","K","Transcription","LOW QUALITY PROTEIN: protein PHR1-LIKE 3-like [Herrania umbratica]"]
["c78420.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Myb family transcription factor PHL6 OS=Arabidopsis thaliana OX=3702 GN=PHL6 PE=2 SV=1","--","--","myb family transcription factor PHL6-like [Herrania umbratica]"]
["c44708.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Protein PHR1-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=PHL1 PE=1 SV=1","S","Function unknown","hypothetical protein B456_007G274700 [Gossypium raimondii]"]
["c46688.graph_c0","--","--","--","--","--","--","MYB-CC type transfactor, LHEQLE motif;; Myb-like DNA-binding domain","Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD34209 [Gossypium barbadense] "]
["c47144.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Protein PHR1-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=PHL3 PE=1 SV=1","K","Transcription","PREDICTED: myb family transcription factor APL-like [Gossypium raimondii] "]
["c29421.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1","K","Transcription","PREDICTED: myb-related protein 2 [Theobroma cacao] "]
["c67953.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif","Myb family transcription factor PHL5 OS=Arabidopsis thaliana OX=3702 GN=PHL5 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107921445 [Gossypium hirsutum] "]
["c48437.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","MYB-CC type transfactor, LHEQLE motif;; Myb-like DNA-binding domain","Myb-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=MYR2 PE=1 SV=1","K","Transcription","PREDICTED: uncharacterized protein LOC105794201 isoform X1 [Gossypium raimondii] "]
["c42908.graph_c3","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|7.29402e-159|gra:105802628|K09264 MADS-box transcription factor, plant | (RefSeq) agamous-like MADS-box protein AGL6","[K]","Transcription ","--","Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana OX=3702 GN=AGL6 PE=1 SV=2","K","Transcription","agamous-like MADS-box protein AGL6 [Gossypium hirsutum] "]
["c37285.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cell cycle (GO:0007049);; ","K09422|3.39027e-37|gra:105782759|K09422 myb proto-oncogene protein, plant | (RefSeq) pre-mRNA-splicing factor CEF1-like","[K]","Transcription ","--","Transcription factor MYB88 OS=Arabidopsis thaliana OX=3702 GN=MYB88 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD26376 [Gossypium barbadense]"]
["c16243.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: flower development (GO:0009908);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","K-box region","MADS-box transcription factor 1 OS=Pisum sativum OX=3888 GN=MTF1 PE=2 SV=1","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Theobroma cacao] "]
["c9048.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: leaf morphogenesis (GO:0009965);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K09338|9.87478e-50|gra:105777417|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT5","[K]","Transcription ","Homeobox domain","Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein HAT5 [Gossypium raimondii] "]
["c7418.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: membrane (GO:0016020);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana OX=3702 GN=ERF084 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF084-like [Gossypium hirsutum]"]
["c62515.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: response to stimulus (GO:0050896);; ","--","--","--","--","--","--","--","WRKY38 [Gossypium aridum]"]
["c20970.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|5.28709e-14|tcc:TCM_033824|K14432 ABA responsive element binding factor | (RefSeq) Abscisic acid responsive elements-binding factor 2 isoform 1","--","--","--","--","--","--","PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Theobroma cacao] "]
["c76704.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.66777e-25|gra:105797276|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT22-like","[K]","Transcription ","--","Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein HAT22-like [Gossypium arboreum] "]
["c15930.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","hypothetical protein IQ06DRAFT_251698 [Stagonospora sp. SRC1lsM3a]"]
["c24575.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","S","Function unknown","PREDICTED: nodulation-signaling pathway 2 protein-like [Gossypium arboreum]"]
["c45305.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Scarecrow-like protein 14 OS=Arabidopsis thaliana OX=3702 GN=SCL14 PE=2 SV=2","K","Transcription","PREDICTED: scarecrow-like protein 33 [Gossypium raimondii] "]
["c94517.graph_c0","[T]","Signal transduction mechanisms ","Biological Process: negative regulation of transcription from RNA polymerase II promoter (GO:0000122);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: negative regulation of induction of conjugation with cellular fusion (GO:0010515);; Biological Process: peptidyl-serine phosphorylation (GO:0018105);; Biological Process: peptidyl-threonine phosphorylation (GO:0018107);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: negative regulation of transcription factor import into nucleus (GO:0042992);; Biological Process: negative regulation of meiotic nuclear division (GO:0045835);; Biological Process: protein autophosphorylation (GO:0046777);; Biological Process: negative regulation of signal transduction involved in conjugation with cellular fusion (GO:0060240);; ","K12761|6.15053e-18|spen:107021493|K12761 carbon catabolite-derepressing protein kinase [EC:2.7.11.1] | (RefSeq) CBL-interacting serine/threonine-protein kinase 11","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; Phosphotransferase enzyme family","CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana OX=3702 GN=CIPK11 PE=1 SV=1","T","Signal transduction mechanisms","kinase-like protein [Stagonospora sp. SRC1lsM3a]"]
["c43750.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cellular response to starvation (GO:0009267);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain;; AF0941-like","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA20062 [Gossypium barbadense]"]
["c41235.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","Basic leucine-zipper C terminal","Light-inducible protein CPRF2 OS=Petroselinum crispum OX=4043 GN=CPRF2 PE=2 SV=2","K","Transcription","PREDICTED: light-inducible protein CPRF2-like isoform X1 [Gossypium hirsutum]"]
["c88065.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: photoperiodism (GO:0009648);; Biological Process: inflorescence development (GO:0010229);; ","K03097|1.27697e-30|csl:COCSUDRAFT_13384|K03097 casein kinase II subunit alpha [EC:2.7.11.1] | (RefSeq) casein kinase II alpha subunit","[TDK]","--","--","Casein kinase II subunit alpha-2 OS=Oryza sativa subsp. japonica OX=39947 GN=HD6 PE=3 SV=1","T","Signal transduction mechanisms","casein kinase ii alpha subunit [Chrysochromulina sp. CCMP291]"]
["c25261.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.50573e-42|gra:105800546|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-6b","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-6b OS=Arabidopsis thaliana OX=3702 GN=HSFA6b PE=2 SV=1","K","Transcription","heat stress transcription factor A-6b-like [Durio zibethinus]"]
["c92854.graph_c0","[C]","Energy production and conversion ","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Cellular Component: nucleus (GO:0005634);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620);; Biological Process: oxidation-reduction process (GO:0055114);; ","K12355|4.60433e-22|nnu:104592609|K12355 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] | (RefSeq) aldehyde dehydrogenase family 2 member C4-like","[C]","Energy production and conversion ","Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2","C","Energy production and conversion","Aldehyde dehydrogenase, C-terminal [Penicillium expansum] "]
["c2470.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|3.61291e-157|gra:105790686|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-7a-like","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-6b OS=Arabidopsis thaliana OX=3702 GN=HSFA6b PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor A-7a-like [Gossypium hirsutum] "]
["c52253.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Basic leucine zipper 43 OS=Arabidopsis thaliana OX=3702 GN=BZIP43 PE=1 SV=1","K","Transcription","PREDICTED: basic leucine zipper 43-like [Gossypium raimondii] "]
["c41250.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: catalytic activity (GO:0003824);; Cellular Component: transcription factor TFIIF complex (GO:0005674);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; ","K03139|5.03789e-67|gra:105778089|K03139 transcription initiation factor TFIIF subunit beta [EC:3.6.4.12] | (RefSeq) general transcription factor IIF subunit 2","[K]","Transcription ","Transcription initiation factor IIF, beta subunit","--","K","Transcription","hypothetical protein GOBAR_AA36484 [Gossypium barbadense]"]
["c53733.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|3.70912e-19|tcc:TCM_010868|K09338 homeobox-leucine zipper protein | (RefSeq) Homeobox-leucine zipper protein HOX3","[K]","Transcription ","--","Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX3 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HOX3-like [Durio zibethinus]"]
["c29812.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: membrane (GO:0016020);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor ERF003-like [Durio zibethinus]"]
["c91339.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: 1-pyrroline-5-carboxylate dehydrogenase activity (GO:0003842);; Molecular Function: proline dehydrogenase activity (GO:0004657);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: proline biosynthetic process (GO:0006561);; Biological Process: proline catabolic process to glutamate (GO:0010133);; Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","--","--","Bifunctional protein putA [Beauveria bassiana D1-5]"]
["c41370.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|4.84873e-104|gra:105797033|K14432 ABA responsive element binding factor | (RefSeq) G-box-binding factor 4","--","--","bZIP transcription factor;; Basic region leucine zipper","G-box-binding factor 4 OS=Arabidopsis thaliana OX=3702 GN=GBF4 PE=1 SV=1","K","Transcription","PREDICTED: G-box-binding factor 4-like isoform X2 [Gossypium hirsutum]"]
["c18751.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|4.52873e-20|gra:105790686|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-7a-like","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-7b OS=Arabidopsis thaliana OX=3702 GN=HSFA7B PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD17390 [Gossypium barbadense]"]
["c43404.graph_c3","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|3.96697e-178|gra:105800389|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-5-like","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-5 OS=Arabidopsis thaliana OX=3702 GN=HSFA5 PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor A-5-like [Gossypium raimondii] "]
["c55916.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","probable WRKY transcription factor 46 [Herrania umbratica]"]
["c41535.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=GATA12 PE=2 SV=1","K","Transcription","GATA transcription factor 12 [Durio zibethinus]"]
["c41497.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIIE complex (GO:0005673);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; ","K03137|1.45218e-65|gra:105801912|K03137 transcription initiation factor TFIIE subunit beta | (RefSeq) general transcription factor IIE subunit 2-like","[K]","Transcription ","--","--","K","Transcription","hypothetical protein B456_007G022800 [Gossypium raimondii]"]
["c52390.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|3.39778e-75|tcc:TCM_030804|K09286 EREBP-like factor | (RefSeq) Ethylene responsive element binding factor 3, putative","--","--","AP2 domain","Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ERF3 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 3 [Gossypium arboreum]"]
["c15221.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana OX=3702 GN=WRI1 PE=2 SV=1","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 [Gossypium raimondii]"]
["c37781.graph_c0","--","--","Biological Process: defense response to oomycetes (GO:0002229);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: regulation of salicylic acid biosynthetic process (GO:0080142);; Biological Process: positive regulation of defense response to bacterium (GO:1900426);; ","--","--","--","--","--","S","Function unknown","PREDICTED: protein SAR DEFICIENT 1-like [Gossypium hirsutum] "]
["c28695.graph_c2","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|2.74616e-42|gra:105769289|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-12-like","--","--","--","Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana OX=3702 GN=RAP2-2 PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor RAP2-12-like isoform X2 [Gossypium arboreum]"]
["c38048.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain)","Agamous-like MADS-box protein AGL104 OS=Arabidopsis thaliana OX=3702 GN=AGL104 PE=1 SV=1","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL104 [Gossypium arboreum]"]
["c59074.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","K","Transcription","AP2/ERF domain-containing transcription factor, putative [Theobroma cacao]"]
["c42952.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA30410 [Gossypium barbadense]"]
["c58728.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: cell proliferation (GO:0008283);; Biological Process: response to auxin (GO:0009733);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: shoot system morphogenesis (GO:0010016);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: root development (GO:0048364);; ","K09338|1.3032e-25|gra:105801968|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT4-like","[K]","Transcription ","--","Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana OX=3702 GN=HAT4 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein HAT4-like [Gossypium raimondii] "]
["c39510.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor BEE 3 OS=Arabidopsis thaliana OX=3702 GN=BEE3 PE=2 SV=1","K","Transcription","PREDICTED: transcription factor BEE 3-like isoform X2 [Gossypium raimondii] "]
["c85534.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|9.28069e-38|gra:105781811|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-11-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1","K","Transcription","hypothetical protein B456_013G244500 [Gossypium raimondii]"]
["c47598.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","K15683|0|gra:105773571|K15683 NF-X1-type zinc finger protein NFXL1 | (RefSeq) NF-X1-type zinc finger protein NFXL2","[K]","Transcription ","NF-X1 type zinc finger","NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana OX=3702 GN=NFXL2 PE=1 SV=2","K","Transcription","PREDICTED: NF-X1-type zinc finger protein NFXL2 [Gossypium arboreum]"]
["c32561.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|4.36551e-37|gra:105785239|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT22-like","[K]","Transcription ","Homeobox associated leucine zipper","Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HAT22-like [Herrania umbratica]"]
["c10135.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.0792e-09|tcc:TCM_037194|K09286 EREBP-like factor | (RefSeq) Integrase-type DNA-binding superfamily protein","--","--","--","Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1","--","--","PREDICTED: dehydration-responsive element-binding protein 3 [Theobroma cacao] "]
["c35823.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|8.94144e-62|gra:105799520|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2-like ethylene-responsive transcription factor At1g16060","--","--","AP2 domain","AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana OX=3702 GN=AIL5 PE=2 SV=2","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Gossypium raimondii]"]
["c47526.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","CCT motif;; tify domain;; Divergent CCT motif;; GATA zinc finger","GATA transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=GATA25 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_DD25838 [Gossypium barbadense]"]
["c92024.graph_c0","[P]","Inorganic ion transport and metabolism ","Biological Process: age-dependent response to reactive oxygen species involved in chronological cell aging (GO:0001320);; Molecular Function: superoxide dismutase activity (GO:0004784);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrial intermembrane space (GO:0005758);; Cellular Component: cytosol (GO:0005829);; Biological Process: cellular copper ion homeostasis (GO:0006878);; Biological Process: cellular zinc ion homeostasis (GO:0006882);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: removal of superoxide radicals (GO:0019430);; Biological Process: fungal-type cell wall organization (GO:0031505);; Biological Process: protein stabilization (GO:0050821);; Biological Process: positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091);; Biological Process: negative regulation of cellular respiration (GO:1901856);; ","K04565|6.05527e-13|smo:SELMODRAFT_233596|K04565 superoxide dismutase, Cu-Zn family [EC:1.15.1.1] | (RefSeq) hypothetical protein","[P]","Inorganic ion transport and metabolism ","Copper/zinc superoxide dismutase (SODC)","Superoxide dismutase [Cu-Zn] OS=Glycine max OX=3847 GN=SOD1 PE=3 SV=1","P","Inorganic ion transport and metabolism","superoxide dismutase Cu-Zn [Botrytis cinerea B05.10] "]
["c50589.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|2.25809e-14|gra:105770652|K14432 ABA responsive element binding factor | (RefSeq) ABSCISIC ACID-INSENSITIVE 5-like protein 2","--","--","--","--","K","Transcription","LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Durio zibethinus]"]
["c20329.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: vegetative phase change (GO:0010050);; Biological Process: abaxial cell fate specification (GO:0010158);; Biological Process: floral meristem determinacy (GO:0010582);; ","K14486|2.00396e-22|gra:105768990|K14486 auxin response factor | (RefSeq) auxin response factor 3","--","--","--","--","K","Transcription","auxin response factor 15-like isoform X1 [Herrania umbratica]"]
["c42196.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","--","--","--","BES1/BZR1 plant transcription factor, N-terminal","BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana OX=3702 GN=BEH4 PE=1 SV=1","S","Function unknown","PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1 [Gossypium arboreum] "]
["c26147.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: activating transcription factor binding (GO:0033613);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K08065|6.3168e-105|gra:105770389|K08065 nuclear transcription Y subunit beta | (RefSeq) nuclear transcription factor Y subunit B-6","[K]","Transcription ","Histone-like transcription factor (CBF/NF-Y) and archaeal histone","Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2","B","Chromatin structure and dynamics","PREDICTED: nuclear transcription factor Y subunit B-6 [Gossypium hirsutum] "]
["c24980.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|2.06256e-26|gra:105773657|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 4-like","--","--","--","--","--","--","PREDICTED: ethylene-responsive transcription factor 4-like [Gossypium hirsutum] "]
["c6883.graph_c0","[V]","Defense mechanisms ","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Molecular Function: thioredoxin peroxidase activity (GO:0008379);; Cellular Component: cell surface (GO:0009986);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: hyphal cell wall (GO:0030446);; Molecular Function: high molecular weight kininogen binding (GO:0030985);; Biological Process: fungal-type cell wall organization (GO:0031505);; Biological Process: filamentous growth of a population of unicellular organisms in response to starvation (GO:0036170);; Biological Process: filamentous growth of a population of unicellular organisms in response to chemical stimulus (GO:0036171);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Biological Process: negative regulation of sequence-specific DNA binding transcription factor activity (GO:0043433);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: unfolded protein binding (GO:0051082);; Biological Process: positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091);; Biological Process: interaction with host (GO:0051701);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: positive regulation of transcription from RNA polymerase II promoter in response to hydrogen peroxide (GO:0061407);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K03386|4.17804e-25|olu:OSTLU_6786|K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","C-terminal domain of 1-Cys peroxiredoxin","2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=BAS1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Peroxiredoxin TSA1 [Pichia kudriavzevii] "]
["c66356.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ziziphus jujuba]"]
["c30551.graph_c0","[R]","General function prediction only ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05275|0|gra:105791227|K05275 pyridoxine 4-dehydrogenase [EC:1.1.1.65] | (RefSeq) pyridoxal reductase, chloroplastic","[C]","Energy production and conversion ","Aldo/keto reductase family;; Aldo/keto reductase family","Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PLR1 PE=1 SV=1","C","Energy production and conversion","PREDICTED: pyridoxal reductase, chloroplastic isoform X1 [Gossypium arboreum]"]
["c36649.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|0|gra:105799703|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-3","[K]","Transcription ","HSF-type DNA-binding;; HSF-type DNA-binding","Heat stress transcription factor A-3 OS=Arabidopsis thaliana OX=3702 GN=HSFA3 PE=1 SV=2","K","Transcription","PREDICTED: heat stress transcription factor A-3 [Gossypium raimondii] "]
["c29957.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cell differentiation (GO:0030154);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of shoot system development (GO:0048831);; ","--","--","--","GRAS domain family","Scarecrow-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=SCL15 PE=1 SV=3","K","Transcription","PREDICTED: scarecrow-like protein 15 [Gossypium raimondii] "]
["c61967.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","--","--","--","--","--","K","Transcription","transcriptional regulator SUPERMAN-like [Durio zibethinus]"]
["c43881.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|0|gra:105792678|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-1e-like","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-1b OS=Arabidopsis thaliana OX=3702 GN=HSFA1B PE=2 SV=2","K","Transcription","hypothetical protein GOBAR_DD25828 [Gossypium barbadense]"]
["c55140.graph_c0","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|2.55674e-55|tcc:TCM_037098|K14491 two-component response regulator ARR-B family | (RefSeq) Type-b response regulator, putative","[K]","Transcription ","Myb-like DNA-binding domain","Two-component response regulator ORR24 OS=Oryza sativa subsp. japonica OX=39947 GN=RR24 PE=2 SV=1","T","Signal transduction mechanisms","two-component response regulator ORR24-like [Durio zibethinus] "]
["c95357.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast stroma (GO:0009570);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RCA PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","ribulose-1,5-bisphosphate carboxylase activase, partial [Oryza sativa Indica Group]"]
["c62766.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 43 OS=Arabidopsis thaliana OX=3702 GN=WRKY43 PE=1 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 43 [Gossypium raimondii] "]
["c14269.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Basic leucine zipper 34 OS=Arabidopsis thaliana OX=3702 GN=BZIP34 PE=1 SV=1","--","--","PREDICTED: basic leucine zipper 34-like [Gossypium raimondii] "]
["c43634.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN=CRF2 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor CRF1 [Gossypium raimondii] "]
["c5233.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=WRKY9 PE=2 SV=1","K","Transcription","WRKY transcription factor 72, putative [Theobroma cacao]"]
["c67434.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: endonuclease activity (GO:0004519);; Biological Process: DNA repair (GO:0006281);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","hypothetical protein VITISV_038518 [Vitis vinifera]"]
["c30916.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|9.5412e-170|tcc:TCM_004275|K09419 heat shock transcription factor, other eukaryote | (RefSeq) DNA binding protein, putative isoform 1","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA2D PE=2 SV=2","K","Transcription","heat stress transcription factor A-7a-like [Durio zibethinus]"]
["c53490.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana OX=3702 GN=ERF062 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF062-like [Gossypium raimondii] "]
["c66742.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 GN=ERF098 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA21238 [Gossypium barbadense]"]
["c36910.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: primary shoot apical meristem specification (GO:0010072);; Biological Process: formation of animal organ boundary (GO:0010160);; Biological Process: secondary shoot formation (GO:0010223);; Biological Process: leaf development (GO:0048366);; Biological Process: regulation of timing of animal organ formation (GO:0048504);; ","--","--","--","No apical meristem (NAM) protein","Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV=1","S","Function unknown","PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Capsicum annuum]"]
["c26019.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 65 OS=Arabidopsis thaliana OX=3702 GN=WRKY65 PE=2 SV=1","K","Transcription","putative WRKY transcription factor 65 -like protein [Gossypium arboreum]"]
["c43662.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","GRAS domain family;; Ribosomal protein S4/S9 N-terminal domain;; S4 domain","Scarecrow-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCL3 PE=1 SV=1","K","Transcription","PREDICTED: scarecrow-like protein 3 [Gossypium hirsutum]"]
["c40595.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: root development (GO:0048364);; ","--","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS26 PE=2 SV=1","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL12 isoform X3 [Gossypium hirsutum]"]
["c27165.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Protein FD OS=Arabidopsis thaliana OX=3702 GN=FD PE=1 SV=1","K","Transcription","protein FD-like [Durio zibethinus]"]
["c35349.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: positive regulation of seed maturation (GO:2000693);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 53 OS=Arabidopsis thaliana OX=3702 GN=BZIP53 PE=1 SV=1","K","Transcription","hypothetical protein COLO4_23232 [Corchorus olitorius]"]
["c34556.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|2.68146e-63|gra:105770322|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","[K]","Transcription ","Homeobox domain;; Homeobox associated leucine zipper","Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana OX=3702 GN=ATHB-5 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein ATHB-6-like [Durio zibethinus]"]
["c44311.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Uncharacterized protein At4g06598 OS=Arabidopsis thaliana OX=3702 GN=At4g06598 PE=2 SV=2","K","Transcription","hypothetical protein GOBAR_AA38901 [Gossypium barbadense]"]
["c29775.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|6.86826e-160|gra:105771530|K14432 ABA responsive element binding factor | (RefSeq) ABSCISIC ACID-INSENSITIVE 5-like protein 3","--","--","bZIP transcription factor;; Basic region leucine zipper","ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DPBF3 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA01003 [Gossypium barbadense]"]
["c27642.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal small subunit assembly (GO:0000028);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: metal ion binding (GO:0046872);; ","K02978|5.73055e-31|gsl:Gasu_53510|K02978 small subunit ribosomal protein S27e | (RefSeq) 40S ribosomal protein S27e","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S27","40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","Similar to 40S ribosomal protein S27; acc. no. Q7RVN2 [Pyronema omphalodes CBS 100304]"]
["c63406.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD06398 [Gossypium barbadense]"]
["c41426.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14514|3.73775e-148|gra:105768049|K14514 ethylene-insensitive protein 3 | (RefSeq) protein ETHYLENE INSENSITIVE 3-like","--","--","--","Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana OX=3702 GN=EIN3 PE=1 SV=1","K","Transcription","PREDICTED: protein ETHYLENE INSENSITIVE 3-like [Gossypium raimondii] "]
["c35592.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: specification of floral organ identity (GO:0010093);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|3.03297e-93|gra:105770918|K09264 MADS-box transcription factor, plant | (RefSeq) floral homeotic protein PMADS 1","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Floral homeotic protein PMADS 1 OS=Petunia hybrida OX=4102 GN=PMADS1 PE=2 SV=1","K","Transcription","floral homeotic protein PMADS 1-like [Durio zibethinus]"]
["c7970.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","--","GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1","K","Transcription","BnaCnng71200D, partial [Brassica napus]"]
["c40957.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: RNA polymerase II transcription factor binding (GO:0001085);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell differentiation (GO:0030154);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 1 OS=Arabidopsis thaliana OX=3702 GN=GATA1 PE=2 SV=2","K","Transcription","GATA transcription factor 1-like [Durio zibethinus] "]
["c9985.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09260|9.65657e-19|tcc:TCM_034501|K09260 MADS-box transcription enhancer factor 2A | (RefSeq) K-box region and MADS-box transcription factor family protein","--","--","--","--","K","Transcription","PREDICTED: MADS-box protein AGL24-like [Gossypium arboreum] "]
["c76108.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: protein dimerization activity (GO:0046983);; Cellular Component: RNA polymerase II transcription factor complex (GO:0090575);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1","S","Function unknown","PREDICTED: transcription factor ORG2-like [Gossypium hirsutum] "]
["c27639.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of ethylene-activated signaling pathway (GO:0010104);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03126|7.6942e-12|gra:105776895|K03126 transcription initiation factor TFIID subunit 12 | (RefSeq) transcription initiation factor TFIID subunit 12b-like","[K]","Transcription ","--","Transcription initiation factor TFIID subunit 12b OS=Arabidopsis thaliana OX=3702 GN=TAF12B PE=1 SV=1","--","--","Taf12 [Gossypium arboreum]"]
["c42069.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|0|gra:105771235|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-7a-like","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-2 OS=Arabidopsis thaliana OX=3702 GN=HSFA2 PE=1 SV=1","K","Transcription","PREDICTED: heat stress transcription factor A-7a-like [Gossypium arboreum]"]
["c36480.graph_c0","--","--","Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: red or far-red light signaling pathway (GO:0010017);; Biological Process: regulation of photomorphogenesis (GO:0010099);; Biological Process: response to UV-B (GO:0010224);; Biological Process: positive regulation of anthocyanin metabolic process (GO:0031539);; Biological Process: positive regulation of circadian rhythm (GO:0042753);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K16241|3.73178e-13|gra:105792837|K16241 transcription factor HY5 | (RefSeq) transcription factor HY5","[K]","Transcription ","--","Transcription factor HY5 OS=Solanum lycopersicum OX=4081 GN=HY5 PE=2 SV=1","K","Transcription","PREDICTED: transcription factor HY5 [Gossypium raimondii] "]
["c17436.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana OX=3702 GN=ERF012 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor ERF014 [Herrania umbratica]"]
["c37490.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|2.41758e-15|gra:105769256|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-1-like","--","--","--","--","--","--","PREDICTED: ethylene-responsive transcription factor RAP2-1-like [Gossypium hirsutum]"]
["c20970.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|1.59627e-27|gra:105769230|K14432 ABA responsive element binding factor | (RefSeq) ABSCISIC ACID-INSENSITIVE 5-like protein 5","--","--","--","ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=ABF2 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA32272 [Gossypium barbadense]"]
["c63858.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana OX=3702 GN=ERF020 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF020 [Gossypium arboreum]"]
["c45287.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09284|1.97475e-115|gra:105777358|K09284 AP2-like factor, euAP2 lineage | (RefSeq) ethylene-responsive transcription factor RAP2-7-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana OX=3702 GN=RAP2-7 PE=2 SV=2","K","Transcription","Ethylene-responsive transcription factor RAP2-7 -like protein [Gossypium arboreum]"]
["c20055.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIIA complex (GO:0005672);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; ","K03123|1.14793e-14|sot:102583950|K03123 transcription initiation factor TFIIA small subunit | (RefSeq) transcription initiation factor IIA subunit 2","[K]","Transcription ","--","Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1","K","Transcription","hypothetical protein GOBAR_DD25187 [Gossypium barbadense]"]
["c32460.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 35 OS=Arabidopsis thaliana OX=3702 GN=WRKY35 PE=2 SV=1","K","Transcription","PREDICTED: WRKY transcription factor 22 [Theobroma cacao]"]
["c5842.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","MULE transposase domain","Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=FRS8 PE=2 SV=2","S","Function unknown","PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]"]
["c39651.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|9.12368e-62|gra:105769256|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-1-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana OX=3702 GN=RAP2-1 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor RAP2-1-like [Gossypium hirsutum] "]
["c35835.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","Myb/SANT-like DNA-binding domain;; Myb-like DNA-binding domain;; Alcohol dehydrogenase transcription factor Myb/SANT-like","Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=1 SV=1","K","Transcription","Zinc finger and SCAN domain-containing protein 20 [Cajanus cajan]"]
["c52902.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","basic leucine zipper 43-like [Durio zibethinus]"]
["c91720.graph_c0","--","--","Molecular Function: transcription coactivator activity (GO:0003713);; Cellular Component: transcription factor TFIIA complex (GO:0005672);; Cellular Component: cytosol (GO:0005829);; Biological Process: RNA polymerase II transcriptional preinitiation complex assembly (GO:0051123);; Biological Process: regulation of nucleic acid-templated transcription (GO:1903506);; ","--","--","--","--","--","K","Transcription","hypothetical protein IQ06DRAFT_318531 [Stagonospora sp. SRC1lsM3a]"]
["c25869.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","DELLA protein GAI OS=Solanum lycopersicum OX=4081 GN=GAI PE=2 SV=1","S","Function unknown","PREDICTED: DELLA protein RGL1-like [Gossypium hirsutum]"]
["c39922.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|9.28213e-47|gra:105766437|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 4-like","--","--","AP2 domain","Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=ERF4 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 4-like [Gossypium hirsutum]"]
["c26796.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana OX=3702 GN=DREB2D PE=2 SV=1","K","Transcription","PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1 [Gossypium hirsutum]"]
["c40362.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 65 OS=Arabidopsis thaliana OX=3702 GN=WRKY65 PE=2 SV=1","K","Transcription","WRKY transcription factor 22-like [Durio zibethinus]"]
["c69583.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: lipid binding (GO:0008289);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: maintenance of floral organ identity (GO:0048497);; ","K09338|3.60347e-16|gra:105795702|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-12-like","[K]","Transcription ","Homeobox domain","Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2","K","Transcription","homeobox-leucine zipper protein ATHB-12-like [Durio zibethinus]"]
["c41018.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL19 isoform X2 [Gossypium hirsutum] "]
["c62711.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana OX=3702 GN=ERF096 PE=1 SV=1","--","--","hypothetical protein GOBAR_DD33965 [Gossypium barbadense]"]
["c40198.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","--","--","--","AP2 domain;; AP2 domain","Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana OX=3702 GN=WRI1 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor WRI1-like [Gossypium arboreum]"]
["c38173.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: specification of floral organ identity (GO:0010093);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|6.76476e-86|gra:105770918|K09264 MADS-box transcription factor, plant | (RefSeq) floral homeotic protein PMADS 1","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Floral homeotic protein PMADS 1 OS=Petunia hybrida OX=4102 GN=PMADS1 PE=2 SV=1","K","Transcription","PREDICTED: floral homeotic protein PMADS 1-like [Gossypium hirsutum]"]
["c31114.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 71 OS=Arabidopsis thaliana OX=3702 GN=WRKY71 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 71 [Gossypium arboreum]"]
["c41322.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: seed germination (GO:0009845);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 8 OS=Arabidopsis thaliana OX=3702 GN=GATA8 PE=2 SV=1","K","Transcription","PREDICTED: GATA transcription factor 8-like [Gossypium arboreum] "]
["c22898.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","hypothetical protein VITISV_042335 [Vitis vinifera]"]
["c38208.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|3.8589e-112|tcc:TCM_025913|K09286 EREBP-like factor | (RefSeq) AP2/ERF domain-containing transcription factor, putative","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor RAP2-11 [Theobroma cacao]"]
["c31031.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1","K","Transcription","PREDICTED: uncharacterized protein LOC105791278 [Gossypium raimondii] "]
["c43290.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper;; bZIP Maf transcription factor","Basic leucine zipper 61 OS=Arabidopsis thaliana OX=3702 GN=BZIP61 PE=1 SV=1","K","Transcription","PREDICTED: basic leucine zipper 61-like isoform X1 [Prunus mume]"]
["c1217.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 47 OS=Arabidopsis thaliana OX=3702 GN=WRKY47 PE=1 SV=2","K","Transcription","probable WRKY transcription factor 47 [Durio zibethinus]"]
["c87368.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|3.0146e-51|fve:101309384|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","[K]","Transcription ","Homeobox associated leucine zipper;; Homeobox domain","Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana OX=3702 GN=ATHB-5 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2 [Fragaria vesca subsp. vesca]"]
["c36364.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K08064|2.09266e-36|gra:105786289|K08064 nuclear transcription factor Y, alpha | (RefSeq) nuclear transcription factor Y subunit A-10-like","--","--","--","--","K","Transcription","hypothetical protein GOBAR_DD00455 [Gossypium barbadense]"]
["c27476.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana OX=3702 GN=ERF034 PE=2 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF038 [Gossypium raimondii] "]
["c53661.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|9.12195e-45|gra:105782693|K14431 transcription factor TGA | (RefSeq) transcription factor TGA2-like","--","--","Seed dormancy control","Transcription factor TGA2.2 OS=Oryza sativa subsp. japonica OX=39947 GN=TGA2.2 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TGA2-like isoform X2 [Gossypium raimondii] "]
["c26981.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 GN=ERF114 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA22548 [Gossypium barbadense]"]
["c36441.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1","K","Transcription","GATA transcription factor 4-like [Durio zibethinus]"]
["c34101.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: oxidation-reduction process (GO:0055114);; ","K09338|7.5273e-52|gra:105791228|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-12-like","[K]","Transcription ","Homeobox domain;; Homeobox associated leucine zipper;; Homeobox KN domain","Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-12 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Gossypium raimondii] "]
["c29139.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: RNA polymerase II transcription factor binding (GO:0001085);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: transcription from RNA polymerase II promoter (GO:0006366);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell differentiation (GO:0030154);; ","--","--","--","--","--","K","Transcription","hypothetical protein B456_008G231500 [Gossypium raimondii]"]
["c38537.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cell cycle (GO:0007049);; ","K09422|1.55891e-17|tcc:TCM_011776|K09422 myb proto-oncogene protein, plant | (RefSeq) Myb124, putative isoform 1","[K]","Transcription ","--","Transcription factor MYB124 OS=Arabidopsis thaliana OX=3702 GN=MYB124 PE=1 SV=1","K","Transcription","PREDICTED: myb-like protein B isoform X1 [Theobroma cacao] "]
["c84640.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: protein dimerization activity (GO:0046983);; Cellular Component: RNA polymerase II transcription factor complex (GO:0090575);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107951333 [Gossypium hirsutum] "]
["c9483.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Biological Process: iron ion homeostasis (GO:0055072);; Cellular Component: RNA polymerase II transcription factor complex (GO:0090575);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor ORG2 OS=Arabidopsis thaliana OX=3702 GN=ORG2 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor ORG2-like [Gossypium arboreum]"]
["c25296.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|4.05377e-76|gra:105798232|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT7-like","[K]","Transcription ","Homeobox domain;; Homeobox KN domain","Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana OX=3702 GN=HAT7 PE=2 SV=4","K","Transcription","hypothetical protein GOBAR_AA32174 [Gossypium barbadense]"]
["c32342.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor SHINE 2 [Theobroma cacao]"]
["c7251.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper;; bZIP Maf transcription factor","bZIP transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=BZIP2 PE=1 SV=1","--","--","PREDICTED: basic leucine zipper 43-like [Gossypium raimondii] "]
["c48366.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: DNA endoreduplication (GO:0042023);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","--","[K]","Transcription ","Transcription factor DP;; E2F/DP family winged-helix DNA-binding domain","Transcription factor-like protein DPB OS=Arabidopsis thaliana OX=3702 GN=DPB PE=1 SV=1","K","Transcription","hypothetical protein B456_006G163100 [Gossypium raimondii]"]
["c46761.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","K14503|4.11722e-116|tcc:TCM_033994|K14503 brassinosteroid resistant 1/2 | (RefSeq) Brassinosteroid signaling positive regulator family protein","--","--","BES1/BZR1 plant transcription factor, N-terminal;; BES1/BZR1 plant transcription factor, N-terminal","Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana OX=3702 GN=BZR1 PE=1 SV=1","K","Transcription","PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Theobroma cacao] "]
["c89376.graph_c0","[KG]","Transcription ;; Carbohydrate transport and metabolism ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: intracellular (GO:0005622);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","DeoR C terminal sensor domain","--","--","--","Glycerol-3-phosphate regulon repressor [Beauveria bassiana D1-5]"]
["c73653.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: defense response (GO:0006952);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; ","K14516|1.85113e-49|gra:105793088|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium hirsutum]"]
["c42807.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","K08064|1.63133e-80|gra:105767978|K08064 nuclear transcription factor Y, alpha | (RefSeq) nuclear transcription factor Y subunit A-7-like","[K]","Transcription ","CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B","Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NFYA7 PE=1 SV=1","K","Transcription","PREDICTED: nuclear transcription factor Y subunit A-7-like [Gossypium hirsutum] "]
["c9332.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K18835|1.57847e-31|gra:105783685|K18835 WRKY transcription factor 2 | (RefSeq) probable WRKY transcription factor 2","--","--","--","--","K","Transcription","hypothetical protein B456_013G179400 [Gossypium raimondii]"]
["c91621.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: ferric iron binding (GO:0008199);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: catechol-containing compound metabolic process (GO:0009712);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: catechol 1,2-dioxygenase activity (GO:0018576);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","Fungal specific transcription factor domain","--","S","Function unknown","Catechol 1,2-dioxygenase [Phialophora attae] "]
["c36876.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Basic leucine zipper 9 OS=Arabidopsis thaliana OX=3702 GN=BZIP9 PE=1 SV=1","K","Transcription","PREDICTED: basic leucine zipper 9-like [Gossypium hirsutum]"]
["c45193.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: asymmetric cell division (GO:0008356);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.87549e-139|gra:105770503|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor B-4-like","[K]","Transcription ","--","Heat stress transcription factor B-4 OS=Arabidopsis thaliana OX=3702 GN=HSFB4 PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor B-4-like [Gossypium raimondii] "]
["c16113.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.98805e-72|gra:105774454|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-1-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana OX=3702 GN=RAP2-1 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X2 [Gossypium hirsutum] "]
["c26326.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: maintenance of floral meristem identity (GO:0010076);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: carpel development (GO:0048440);; Biological Process: petal development (GO:0048441);; Biological Process: sepal development (GO:0048442);; Biological Process: stamen development (GO:0048443);; ","K09264|1.22672e-115|gra:105779850|K09264 MADS-box transcription factor, plant | (RefSeq) MADS-box protein CMB1-like","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","MADS-box protein 04g005320 OS=Solanum lycopersicum OX=4081 GN=Solyc04g005320 PE=3 SV=1","K","Transcription","PREDICTED: MADS-box protein CMB1-like [Gossypium arboreum]"]
["c50985.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA14753 [Gossypium barbadense]"]
["c52270.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09391|0|gra:105798285|K09391 transcription factor E2F7/8 | (RefSeq) E2F transcription factor-like E2FF","[K]","Transcription ","E2F/DP family winged-helix DNA-binding domain","E2F transcription factor-like E2FF OS=Arabidopsis thaliana OX=3702 GN=E2FF PE=2 SV=1","K","Transcription","PREDICTED: E2F transcription factor-like E2FF isoform X1 [Gossypium raimondii] "]
["c7903.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","--","Protein indeterminate-domain 1 OS=Arabidopsis thaliana OX=3702 GN=IDD1 PE=1 SV=1","S","Function unknown","protein indeterminate-domain 9-like isoform X1 [Durio zibethinus]"]
["c23125.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03129|4.58379e-22|gra:105770122|K03129 transcription initiation factor TFIID subunit 4 | (RefSeq) transcription initiation factor TFIID subunit 4b-like","[K]","Transcription ","Transcription initiation factor TFIID component TAF4 family","Transcription initiation factor TFIID subunit 4 OS=Arabidopsis thaliana OX=3702 GN=TAF4 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD11671 [Gossypium barbadense]"]
["c53688.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: leaf morphogenesis (GO:0009965);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K09338|5.68575e-21|tcc:TCM_016864|K09338 homeobox-leucine zipper protein | (RefSeq) Homeobox-leucine zipper protein HAT5","[K]","Transcription ","--","Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HAT5-like [Durio zibethinus] "]
["c48050.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIIA complex (GO:0005672);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; ","K03122|1.24756e-91|gra:105770185|K03122 transcription initiation factor TFIIA large subunit | (RefSeq) transcription initiation factor IIA large subunit","[K]","Transcription ","Transcription factor IIA, alpha/beta subunit;; Transcription factor IIA, alpha/beta subunit","--","K","Transcription","hypothetical protein B456_009G096500 [Gossypium raimondii]"]
["c43987.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: catalytic activity (GO:0003824);; Cellular Component: transcription factor TFIIF complex (GO:0005674);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; ","K03139|7.36492e-97|gra:105784813|K03139 transcription initiation factor TFIIF subunit beta [EC:3.6.4.12] | (RefSeq) transcription initiation factor IIF subunit beta-like","[K]","Transcription ","Transcription initiation factor IIF, beta subunit;; Transcription initiation factor IIF, beta subunit","--","K","Transcription","transcription initiation factor IIF subunit beta [Manihot esculenta] "]
["c94024.graph_c0","--","--","Molecular Function: transcription factor activity, RNA polymerase I CORE element sequence-specific binding (GO:0001169);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription from RNA polymerase I promoter (GO:0006356);; ","--","--","--","RNA polymerase I specific transcription initiation factor RRN3","--","K","Transcription","hypothetical protein A1O5_01487 [Cladophialophora psammophila CBS 110553] "]
["c42908.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|3.10847e-71|gra:105780473|K09264 MADS-box transcription factor, plant | (RefSeq) agamous-like MADS-box protein AGL1","[K]","Transcription ","K-box region","Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana OX=3702 GN=AGL1 PE=1 SV=1","K","Transcription","agamous-like MADS-box protein AGL1 [Gossypium hirsutum] "]
["c94406.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: defense response (GO:0006952);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","--","--","probable WRKY transcription factor 72 [Durio zibethinus]"]
["c54824.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.40627e-17|gra:105774594|K09286 EREBP-like factor | (RefSeq) dehydration-responsive element-binding protein 3-like","--","--","--","--","K","Transcription","dehydration-responsive element-binding protein 3-like [Durio zibethinus]"]
["c46112.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","Basic region leucine zipper","Basic leucine zipper 19 OS=Arabidopsis thaliana OX=3702 GN=BZIP19 PE=2 SV=1","K","Transcription","PREDICTED: basic leucine zipper 19-like isoform X1 [Gossypium hirsutum] "]
["c47652.graph_c3","[K]","Transcription ","Molecular Function: plastid sigma factor activity (GO:0001053);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Cellular Component: chloroplast (GO:0009507);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: photosystem II assembly (GO:0010207);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K03093|4.96462e-149|gra:105765469|K03093 RNA polymerase sigma factor | (RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial","--","--","Sigma-70 region 3;; Sigma-70, region 4;; Sigma-70 region 2","RNA polymerase sigma factor sigE, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIGE PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA28337 [Gossypium barbadense]"]
["c50981.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g21705 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD08459 [Gossypium barbadense]"]
["c47064.graph_c2","--","--","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14494|0|gra:105785690|K14494 DELLA protein | (RefSeq) DELLA protein GAIP-B","--","--","GRAS domain family;; Transcriptional regulator DELLA protein N terminal","DELLA protein GAI1 OS=Vitis vinifera OX=29760 GN=GAI1 PE=2 SV=1","K","Transcription","PREDICTED: DELLA protein GAIP-B-like [Gossypium hirsutum] "]
["c7970.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","--","GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1","K","Transcription","GATA transcription factor, putative isoform 2 [Theobroma cacao]"]
["c56596.graph_c0","--","--","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14494|7.67294e-20|gra:105785690|K14494 DELLA protein | (RefSeq) DELLA protein GAIP-B","--","--","--","DELLA protein GAIP OS=Cucurbita maxima OX=3661 GN=GAIP PE=2 SV=1","K","Transcription","DELLA protein GAIP-B-like [Herrania umbratica]"]
["c36364.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K08064|8.94088e-131|gra:105786289|K08064 nuclear transcription factor Y, alpha | (RefSeq) nuclear transcription factor Y subunit A-10-like","[K]","Transcription ","CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B","Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana OX=3702 GN=NFYA2 PE=2 SV=1","K","Transcription","PREDICTED: nuclear transcription factor Y subunit A-10-like [Gossypium raimondii] "]
["c26874.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09060|6.3075e-44|tcc:TCM_000436|K09060 plant G-box-binding factor | (RefSeq) G-box binding factor 1 isoform 1","--","--","bZIP transcription factor;; Basic region leucine zipper","G-box-binding factor 1 OS=Arabidopsis thaliana OX=3702 GN=GBF1 PE=1 SV=2","K","Transcription","PREDICTED: G-box-binding factor 1 isoform X1 [Theobroma cacao] "]
["c29811.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: specification of floral organ identity (GO:0010093);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|1.22925e-49|gra:105786171|K09264 MADS-box transcription factor, plant | (RefSeq) floral homeotic protein PMADS 2-like","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain)","Floral homeotic protein PMADS 2 OS=Petunia hybrida OX=4102 GN=PMADS2 PE=2 SV=1","K","Transcription","hypothetical protein B456_002G223100 [Gossypium raimondii]"]
["c29680.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 49 OS=Arabidopsis thaliana OX=3702 GN=WRKY49 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 49 [Gossypium raimondii] "]
["c48375.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09060|7.64777e-31|gra:105789386|K09060 plant G-box-binding factor | (RefSeq) transcription factor HBP-1a","--","--","Disordered region downstream of MFMR","bZIP transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=BZIP16 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA23669 [Gossypium barbadense]"]
["c81017.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana OX=3702 GN=ERF021 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF021-like [Gossypium arboreum] "]
["c41413.graph_c2","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|1.71533e-34|tcc:TCM_029596|K09264 MADS-box transcription factor, plant | (RefSeq) K-box region and MADS-box transcription factor family protein isoform 1","[K]","Transcription ","--","Floral homeotic protein AGAMOUS OS=Panax ginseng OX=4054 GN=AG2 PE=2 SV=1","K","Transcription","floral homeotic protein AGAMOUS-like isoform X2 [Durio zibethinus]"]
["c21921.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: protein ADP-ribosylation (GO:0006471);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","--","MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1","K","Transcription","hypothetical protein POPTR_0007s03290g [Populus trichocarpa]"]
["c32648.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: catalytic activity (GO:0003824);; Cellular Component: transcription factor TFIIF complex (GO:0005674);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; Cellular Component: integral component of membrane (GO:0016021);; ","K03139|1.14396e-36|tcc:TCM_034139|K03139 transcription initiation factor TFIIF subunit beta [EC:3.6.4.12] | (RefSeq) JHL18I08.10 protein isoform 1","[K]","Transcription ","--","--","K","Transcription","PREDICTED: transcription initiation factor IIF subunit beta-like isoform X2 [Gossypium hirsutum] "]
["c64824.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana OX=3702 GN=ERF061 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF061-like [Gossypium hirsutum]"]
["c39152.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1","K","Transcription","PREDICTED: ocs element-binding factor 1-like [Gossypium raimondii] "]
["c54684.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: signal transducer activity (GO:0004871);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: signal transduction (GO:0007165);; ","--","--","--","--","--","--","--","Signal transducer and activator of transcription A [Gossypium arboreum]"]
["c53880.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.92985e-78|gra:105802808|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor ERF023-like","--","--","AP2 domain","Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana OX=3702 GN=ERF023 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF023 [Gossypium arboreum]"]
["c29721.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|4.77979e-126|gra:105763245|K09264 MADS-box transcription factor, plant | (RefSeq) floral homeotic protein PMADS 1-like","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Floral homeotic protein PMADS 1 OS=Petunia hybrida OX=4102 GN=PMADS1 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA26725 [Gossypium barbadense]"]
["c48586.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of ethylene-activated signaling pathway (GO:0010104);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03126|5.84806e-104|tcc:TCM_029120|K03126 transcription initiation factor TFIID subunit 12 | (RefSeq) Transcription initiation factor TFIID subunit A isoform 1","[K]","Transcription ","Transcription initiation factor TFIID subunit A","Transcription initiation factor TFIID subunit 12b OS=Arabidopsis thaliana OX=3702 GN=TAF12B PE=1 SV=1","K","Transcription","PREDICTED: transcription initiation factor TFIID subunit 12b [Gossypium arboreum]"]
["c38370.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K13425|9.23773e-59|gra:105762538|K13425 WRKY transcription factor 22 | (RefSeq) WRKY transcription factor 22-like","--","--","WRKY DNA -binding domain","WRKY transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=WRKY22 PE=2 SV=1","K","Transcription","PREDICTED: WRKY transcription factor 22-like [Gossypium hirsutum]"]
["c26467.graph_c0","--","--","Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of defense response (GO:0031347);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 40 OS=Arabidopsis thaliana OX=3702 GN=WRKY40 PE=1 SV=1","K","Transcription","WRKY DNA-binding protein 40, putative isoform 2 [Theobroma cacao]"]
["c42304.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|1.18489e-60|gra:105770840|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2-like ethylene-responsive transcription factor At1g16060","--","--","AP2 domain;; AP2 domain","AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana OX=3702 GN=At1g16060 PE=2 SV=1","K","Transcription","hypothetical protein B456_009G122000 [Gossypium raimondii]"]
["c47143.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1","K","Transcription","PREDICTED: GATA transcription factor 26-like [Gossypium hirsutum] "]
["c45015.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Scarecrow-like protein 32 OS=Arabidopsis thaliana OX=3702 GN=SCL32 PE=1 SV=1","S","Function unknown","PREDICTED: scarecrow-like protein 32 [Gossypium raimondii] "]
["c49419.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|7.61776e-70|gra:105792043|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT4","[K]","Transcription ","HD-ZIP protein N terminus","Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana OX=3702 GN=HAT2 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_AA39389 [Gossypium barbadense]"]
["c40083.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: flower development (GO:0009908);; Biological Process: regulation of circadian rhythm (GO:0042752);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: histone methyltransferase activity (H3-K36 specific) (GO:0046975);; Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: histone H3-K36 demethylation (GO:0070544);; ","K10277|1.53919e-107|tcc:TCM_040527|K10277 lysine-specific demethylase 8 [EC:1.14.11.27] | (RefSeq) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein isoform 1","[BT]","--","Cupin-like domain;; Cupin superfamily protein;; JmjC domain, hydroxylase","Lysine-specific demethylase JMJ30 OS=Arabidopsis thaliana OX=3702 GN=JMJ30 PE=1 SV=1","S","Function unknown","lysine-specific demethylase JMJ30-like isoform X6 [Durio zibethinus]"]
["c42834.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|3.60476e-87|tcc:TCM_030804|K09286 EREBP-like factor | (RefSeq) Ethylene responsive element binding factor 3, putative","--","--","AP2 domain","Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ERF3 PE=1 SV=1","K","Transcription","ethylene-responsive transcription factor 3-like [Herrania umbratica]"]
["c28281.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Agamous-like MADS-box protein AGL70 OS=Arabidopsis thaliana OX=3702 GN=AGL70 PE=2 SV=1","K","Transcription","agamous-like MADS-box protein AGL70 [Durio zibethinus]"]
["c35389.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: positive regulation of seed maturation (GO:2000693);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 53 OS=Arabidopsis thaliana OX=3702 GN=BZIP53 PE=1 SV=1","K","Transcription","hypothetical protein COLO4_23232 [Corchorus olitorius]"]
["c49896.graph_c0","[KL]","Transcription ;; Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; ","--","[R]","General function prediction only ","SNF2 family N-terminal domain;; Helicase conserved C-terminal domain;; Chromo (CHRromatin Organisation MOdifier) domain;; Class II histone deacetylase complex subunits 2 and 3;; Type III restriction enzyme, res subunit;; PHD-finger;; Domain of Unknown Function (DUF1087)","Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana OX=3702 GN=CHR4 PE=2 SV=1","L","Replication, recombination and repair","Chromodomain-helicase-DNA-binding protein 5 [Gossypium arboreum]"]
["c70974.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.26704e-23|pxb:103931532|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 4-like","--","--","AP2 domain","Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=ERF9 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 4-like [Tarenaya hassleriana]"]
["c38287.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper;; bZIP Maf transcription factor","Basic leucine zipper 43 OS=Arabidopsis thaliana OX=3702 GN=BZIP43 PE=1 SV=1","K","Transcription","PREDICTED: basic leucine zipper 43-like [Gossypium hirsutum] "]
["c84639.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","Fungal specific transcription factor domain","--","S","Function unknown","hypothetical protein IQ06DRAFT_311363 [Stagonospora sp. SRC1lsM3a]"]
["c40751.graph_c0","--","--","Biological Process: defense response to oomycetes (GO:0002229);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: positive regulation of abscisic acid-activated signaling pathway (GO:0009789);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: transferase activity (GO:0016740);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: regulation of salicylic acid biosynthetic process (GO:0080142);; Biological Process: positive regulation of response to water deprivation (GO:1902584);; ","--","--","--","Calmodulin binding protein-like","Calmodulin-binding protein 60 B OS=Arabidopsis thaliana OX=3702 GN=CBP60B PE=2 SV=1","S","Function unknown","PREDICTED: calmodulin-binding protein 60 B-like [Gossypium hirsutum] "]
["c93318.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","S","Function unknown","hypothetical protein PV09_04179 [Verruconis gallopava] "]
["c87214.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein-N(PI)-phosphohistidine-sugar phosphotransferase activity (GO:0008982);; Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Biological Process: carbohydrate transmembrane transport (GO:0034219);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","--","--","6-phospho-beta-glucosidase [Beauveria bassiana D1-5]"]
["c37474.graph_c0","--","--","Molecular Function: translation repressor activity, nucleic acid binding (GO:0000900);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: negative regulation of translation (GO:0017148);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: floral whorl development (GO:0048438);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1","K","Transcription","PREDICTED: MADS-box protein SVP [Gossypium arboreum] "]
["c3463.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein polyubiquitination (GO:0000209);; Biological Process: telomere maintenance via recombination (GO:0000722);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Cellular Component: chromosome, telomeric region (GO:0000781);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: chromatin remodeling (GO:0006338);; Biological Process: chromatin silencing at telomere (GO:0006348);; Biological Process: DNA-templated transcription, termination (GO:0006353);; Biological Process: histone monoubiquitination (GO:0010390);; Biological Process: negative regulation of transcription by transcription factor catabolism (GO:0010620);; Molecular Function: acid-amino acid ligase activity (GO:0016881);; Biological Process: ubiquitin-dependent ERAD pathway (GO:0030433);; Biological Process: filamentous growth (GO:0030447);; Biological Process: chromatin silencing at silent mating-type cassette (GO:0030466);; Biological Process: chromatin assembly (GO:0031497);; Biological Process: mitotic G1 DNA damage checkpoint (GO:0031571);; Cellular Component: HULC complex (GO:0033503);; Biological Process: cellular response to UV (GO:0034644);; Biological Process: meiotic DNA double-strand break formation (GO:0042138);; Biological Process: error-free postreplication DNA repair (GO:0042275);; Biological Process: error-prone translesion synthesis (GO:0042276);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Biological Process: regulation of histone H3-K4 methylation (GO:0051569);; Molecular Function: ubiquitin conjugating enzyme activity (GO:0061631);; Biological Process: error-free translesion synthesis (GO:0070987);; Biological Process: cellular response to hyperoxia (GO:0071455);; Biological Process: ubiquitin-dependent protein catabolic process via the N-end rule pathway (GO:0071596);; Biological Process: histone H2B conserved C-terminal lysine ubiquitination (GO:0071894);; Biological Process: regulation of dipeptide transport (GO:0090089);; Cellular Component: Rad6-Rad18 complex (GO:0097505);; Biological Process: negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process in response to increased oxygen levels (GO:1901487);; ","K10573|2.65117e-36|vvi:100246805|K10573 ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] | (RefSeq) ubiquitin-conjugating enzyme E2 2","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin-conjugating enzyme","Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","ubiquitin-conjugating enzyme E2 2 [Hyphopichia burtonii NRRL Y-1933] "]
["c43459.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transaminase activity (GO:0008483);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|4.32646e-116|gra:105787815|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","[K]","Transcription ","Homeobox associated leucine zipper;; Homeobox domain;; Homeobox KN domain","Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Gossypium hirsutum]"]
["c89613.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14514|1.00739e-42|gra:105804246|K14514 ethylene-insensitive protein 3 | (RefSeq) putative ETHYLENE INSENSITIVE 3-like 4 protein","--","--","Ethylene insensitive 3","ETHYLENE INSENSITIVE 3-like 5 protein OS=Arabidopsis thaliana OX=3702 GN=EIL5 PE=2 SV=1","K","Transcription","PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein [Gossypium raimondii] "]
["c46927.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|2.16088e-14|pop:POPTR_0009s16590g|K14431 transcription factor TGA | (RefSeq) POPTRDRAFT_1085955; bZIP family transcription factor family protein","--","--","--","--","K","Transcription","hypothetical protein GOBAR_DD06335 [Gossypium barbadense]"]
["c48088.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|0|gra:105763477|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2-like ethylene-responsive transcription factor ANT","--","--","AP2 domain","AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana OX=3702 GN=ANT PE=1 SV=2","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Gossypium hirsutum]"]
["c27003.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|9.36968e-44|bna:106424546|K09286 EREBP-like factor | (RefSeq) dehydration-responsive element-binding protein 3-like","--","--","AP2 domain","Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1","K","Transcription","dehydration-responsive element-binding protein 3 [Brassica napus]"]
["c10735.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K18835|5.13949e-70|gra:105790263|K18835 WRKY transcription factor 2 | (RefSeq) probable WRKY transcription factor 2","--","--","--","Probable WRKY transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=WRKY2 PE=1 SV=1","K","Transcription","hypothetical protein B456_004G034600 [Gossypium raimondii]"]
["c27055.graph_c2","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","K14503|1.62544e-97|tcc:TCM_000451|K14503 brassinosteroid resistant 1/2 | (RefSeq) Brassinosteroid signaling positive regulator family protein isoform 1","--","--","BES1/BZR1 plant transcription factor, N-terminal","BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana OX=3702 GN=BEH2 PE=1 SV=1","K","Transcription","BES1/BZR1 homolog protein 2-like [Durio zibethinus]"]
["c95415.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein polyubiquitination (GO:0000209);; Biological Process: telomere maintenance via recombination (GO:0000722);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Cellular Component: chromosome, telomeric region (GO:0000781);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: chromatin remodeling (GO:0006338);; Biological Process: chromatin silencing at telomere (GO:0006348);; Biological Process: DNA-templated transcription, termination (GO:0006353);; Biological Process: histone monoubiquitination (GO:0010390);; Biological Process: negative regulation of transcription by transcription factor catabolism (GO:0010620);; Molecular Function: ligase activity (GO:0016874);; Biological Process: ubiquitin-dependent ERAD pathway (GO:0030433);; Biological Process: chromatin silencing at silent mating-type cassette (GO:0030466);; Biological Process: chromatin assembly (GO:0031497);; Biological Process: mitotic G1 DNA damage checkpoint (GO:0031571);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Cellular Component: HULC complex (GO:0033503);; Biological Process: meiotic DNA double-strand break formation (GO:0042138);; Biological Process: error-free postreplication DNA repair (GO:0042275);; Biological Process: error-prone translesion synthesis (GO:0042276);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Biological Process: regulation of histone H3-K4 methylation (GO:0051569);; Molecular Function: ubiquitin protein ligase activity (GO:0061630);; Molecular Function: ubiquitin conjugating enzyme activity (GO:0061631);; Biological Process: error-free translesion synthesis (GO:0070987);; Biological Process: cellular response to hyperoxia (GO:0071455);; Biological Process: ubiquitin-dependent protein catabolic process via the N-end rule pathway (GO:0071596);; Biological Process: histone H2B conserved C-terminal lysine ubiquitination (GO:0071894);; Biological Process: regulation of dipeptide transport (GO:0090089);; Cellular Component: Rad6-Rad18 complex (GO:0097505);; Biological Process: negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process in response to increased oxygen levels (GO:1901487);; ","K10573|3.01386e-34|gsl:Gasu_41850|K10573 ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] | (RefSeq) ubiquitin-conjugating enzyme E2","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin-conjugating enzyme","Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein EMIHUDRAFT_445078 [Emiliania huxleyi CCMP1516] "]
["c24364.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 40 OS=Arabidopsis thaliana OX=3702 GN=WRKY40 PE=1 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 40 [Gossypium hirsutum]"]
["c43207.graph_c0","--","--","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","GRAS domain family","Scarecrow-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCL3 PE=1 SV=1","K","Transcription","scarecrow-like protein 3 [Durio zibethinus] "]
["c80617.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana OX=3702 GN=ERF061 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor ERF061-like [Durio zibethinus]"]
["c42134.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|3.2488e-130|gra:105784902|K09264 MADS-box transcription factor, plant | (RefSeq) floral homeotic protein AGAMOUS-like","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1","K","Transcription","PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 [Gossypium hirsutum] "]
["c83544.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=WRKY29 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 29 isoform X1 [Gossypium raimondii] "]
["c87833.graph_c0","--","--","Cellular Component: nuclear chromatin (GO:0000790);; Molecular Function: RNA polymerase II core promoter proximal region sequence-specific DNA binding (GO:0000978);; Molecular Function: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding (GO:0001077);; Molecular Function: transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding (GO:0001078);; Biological Process: positive regulation of transcription from RNA polymerase II promoter (GO:0045944);; Cellular Component: M/G1 phase-specific MADS box-forkhead transcription factor complex (GO:0097221);; Biological Process: positive regulation of induction of conjugation with cellular fusion (GO:1900237);; ","--","[K]","Transcription ","Forkhead domain","--","K","Transcription","fork head transcription factor, partial [Basidiobolus meristosporus CBS 931.73]"]
["c36326.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|4.34598e-61|tcc:TCM_034652|K09285 AP2-like factor, ANT lineage | (RefSeq) Integrase-type DNA-binding superfamily protein","--","--","--","AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana OX=3702 GN=ANT PE=1 SV=2","K","Transcription","hypothetical protein COLO4_28455 [Corchorus olitorius]"]
["c43194.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|2.94717e-148|tcc:TCM_011279|K09419 heat shock transcription factor, other eukaryote | (RefSeq) Heat shock transcription factor A8, putative","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-8 OS=Arabidopsis thaliana OX=3702 GN=HSFA8 PE=2 SV=1","K","Transcription","heat stress transcription factor A-8 [Durio zibethinus]"]
["c52191.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein channel activity (GO:0015266);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: protein localization to organelle (GO:0033365);; Biological Process: protein transmembrane transport (GO:0071806);; ","--","--","--","Tim17/Tim22/Tim23/Pmp24 family","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC105790798 [Gossypium raimondii] "]
["c49743.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cell cycle (GO:0007049);; ","K09422|0|gra:105794176|K09422 myb proto-oncogene protein, plant | (RefSeq) myb-like protein Q","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB88 OS=Arabidopsis thaliana OX=3702 GN=MYB88 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA34614 [Gossypium barbadense]"]
["c83052.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.22755e-55|fve:101310599|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-13","[K]","Transcription ","Homeobox associated leucine zipper","Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana OX=3702 GN=ATHB-13 PE=2 SV=2","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-13 [Fragaria vesca subsp. vesca]"]
["c10498.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","K","Transcription","trihelix transcription factor GT-1-like [Durio zibethinus]"]
["c38662.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper;; bZIP Maf transcription factor","bZIP transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=BZIP50 PE=2 SV=1","K","Transcription","hypothetical protein B456_009G309200 [Gossypium raimondii]"]
["c31346.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding (GO:0003705);; Cellular Component: nucleoplasm (GO:0005654);; Molecular Function: transcription factor binding (GO:0008134);; Biological Process: negative regulation of gene expression (GO:0010629);; Biological Process: male sex determination (GO:0030238);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: positive regulation of male gonad development (GO:2000020);; ","K09273|3.59313e-11|ppp:PHYPADRAFT_54994|K09273 upstream-binding transcription factor | (RefSeq) hypothetical protein","[K]","Transcription ","HMG (high mobility group) box;; HMG-box domain","FACT complex subunit SSRP1-A OS=Oryza sativa subsp. japonica OX=39947 GN=SSRP1-A PE=2 SV=1","B","Chromatin structure and dynamics","sex-determining region Y protein, partial [Carica papaya] "]
["c47335.graph_c0","[TK]","Signal transduction mechanisms ;; Transcription ","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|0|tcc:TCM_037098|K14491 two-component response regulator ARR-B family | (RefSeq) Type-b response regulator, putative","[K]","Transcription ","Response regulator receiver domain;; DNA polymerase phi;; Myb-like DNA-binding domain","Two-component response regulator ORR23 OS=Oryza sativa subsp. japonica OX=39947 GN=RR23 PE=2 SV=1","T","Signal transduction mechanisms","two-component response regulator ARR18 [Herrania umbratica]"]
["c57907.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: double-strand break repair (GO:0006302);; Biological Process: DNA recombination (GO:0006310);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","K09419|3.02477e-19|tcc:TCM_000610|K09419 heat shock transcription factor, other eukaryote | (RefSeq) Heat shock factor 4","--","--","--","--","K","Transcription","PREDICTED: heat shock factor protein HSF24 [Theobroma cacao]"]
["c21144.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","L","Replication, recombination and repair","hypothetical protein B456_008G049300 [Gossypium raimondii]"]
["c32307.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K06620|8.89785e-16|tcc:TCM_041291|K06620 transcription factor E2F3 | (RefSeq) Transcription factor E2F isoform 1","[K]","Transcription ","--","Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1","K","Transcription","hypothetical protein B456_013G257100 [Gossypium raimondii]"]
["c28972.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Scarecrow-like protein 14 OS=Arabidopsis thaliana OX=3702 GN=SCL14 PE=2 SV=2","K","Transcription","PREDICTED: scarecrow-like protein 30 [Gossypium raimondii] "]
["c62567.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN=CRF6 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA01665 [Gossypium barbadense]"]
["c29607.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|2.20865e-95|tcc:TCM_040576|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2 domain-containing transcription factor","--","--","--","AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1","K","Transcription","AP2-like ethylene-responsive transcription factor PLT2 [Herrania umbratica]"]
["c88793.graph_c0","[V]","Defense mechanisms ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: chloroplast (GO:0009507);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: peroxiredoxin activity (GO:0051920);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K03386|4.37794e-77|sita:101756795|K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] | (RefSeq) 2-Cys peroxiredoxin BAS1, chloroplastic","[O]","Posttranslational modification, protein turnover, chaperones ","C-terminal domain of 1-Cys peroxiredoxin;; AhpC/TSA family","2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BAS1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","2-cys peroxiredoxin bas1, partial [Oryza sativa Indica Group]"]
["c29019.graph_c0","--","--","Biological Process: negative regulation of transcription from RNA polymerase II promoter (GO:0000122);; Molecular Function: core promoter sequence-specific DNA binding (GO:0001046);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: atrichoblast differentiation (GO:0010055);; Biological Process: regulation of response to nutrient levels (GO:0032107);; Biological Process: regulation of DNA-templated transcription in response to stress (GO:0043620);; Biological Process: lateral root development (GO:0048527);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 75 OS=Arabidopsis thaliana OX=3702 GN=WRKY75 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 75 [Theobroma cacao] "]
["c48422.graph_c1","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sigma factor activity (GO:0016987);; ","--","--","--","Sigma-70 region 3;; Sigma-70 region 2;; Sigma-70, region 4","RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1","K","Transcription","PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like isoform X2 [Gossypium hirsutum]"]
["c70361.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Transcription factor RF2a OS=Oryza sativa subsp. japonica OX=39947 GN=RF2a PE=1 SV=1","--","--","PREDICTED: basic leucine zipper 34-like [Gossypium arboreum]"]
["c48462.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: RNA binding (GO:0003723);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K13162|0|gra:105782377|K13162 poly(rC)-binding protein 2/3/4 | (RefSeq) KH domain-containing protein At4g18375","[AR]","--","KH domain;; KH domain;; KH domain","KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1","S","Function unknown","GATA transcription factor 28 [Gossypium arboreum]"]
["c44057.graph_c2","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|2.45631e-48|gra:105797213|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-4-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana OX=3702 GN=RAP2-13 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD00554 [Gossypium barbadense]"]
["c56958.graph_c0","--","--","Molecular Function: TFIIB-class transcription factor binding (GO:0001093);; Molecular Function: double-stranded DNA binding (GO:0003690);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Biological Process: pollen germination (GO:0009846);; Molecular Function: RNA polymerase binding (GO:0070063);; ","--","[K]","Transcription ","--","Plant-specific TFIIB-related protein PTF2 OS=Arabidopsis thaliana OX=3702 GN=PTF2 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA04837 [Gossypium barbadense]"]
["c85414.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: anatomical structure morphogenesis (GO:0009653);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: system development (GO:0048731);; ","K09338|6.30857e-38|jcu:105632304|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT4-like","[K]","Transcription ","HD-ZIP protein N terminus","Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana OX=3702 GN=HAT1 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HAT4-like [Hevea brasiliensis]"]
["c40154.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","K14503|2.75441e-24|thj:104827531|K14503 brassinosteroid resistant 1/2 | (RefSeq) BES1/BZR1 homolog protein 3-like","--","--","BES1/BZR1 plant transcription factor, N-terminal","BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana OX=3702 GN=BEH4 PE=1 SV=1","--","--","hypothetical protein GOBAR_AA36200 [Gossypium barbadense]"]
["c44802.graph_c0","--","--","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","GRAS domain family","Scarecrow-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCL3 PE=1 SV=1","K","Transcription","Scarecrow-like 3 [Theobroma cacao]"]
["c40152.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana OX=3702 GN=ERF061 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF061-like [Gossypium raimondii] "]
["c38045.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.26013e-79|tcc:TCM_030804|K09286 EREBP-like factor | (RefSeq) Ethylene responsive element binding factor 3, putative","--","--","AP2 domain","Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ERF3 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 3 [Theobroma cacao] "]
["c94366.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912);; ","--","--","--","--","--","S","Function unknown","C6 zinc finger domain-containing protein [Colletotrichum simmondsii]"]
["c45623.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|0|gra:105777710|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-4a-like","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-4a OS=Arabidopsis thaliana OX=3702 GN=HSFA4A PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor A-4a-like [Gossypium raimondii] "]
["c66713.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 71 OS=Arabidopsis thaliana OX=3702 GN=WRKY71 PE=2 SV=1","K","Transcription","probable WRKY transcription factor 71 [Gossypium hirsutum] "]
["c40338.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1","K","Transcription","bZIP transcription factor 44-like [Durio zibethinus]"]
["c15789.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor WIN1-like [Gossypium arboreum]"]
["c43763.graph_c1","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: RNA polymerase II transcription factor binding (GO:0001085);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell differentiation (GO:0030154);; Biological Process: positive regulation of transcription from RNA polymerase II promoter (GO:0045944);; ","--","[K]","Transcription ","--","GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1","K","Transcription","GATA transcription factor 26-like isoform X2 [Durio zibethinus]"]
["c60623.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: defense response (GO:0006952);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; ","K14516|1.76135e-38|gra:105793088|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium hirsutum]"]
["c47816.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|3.90403e-116|tcc:TCM_044596|K14432 ABA responsive element binding factor | (RefSeq) BZIP domain class transcription factor isoform 1","--","--","bZIP transcription factor;; Basic region leucine zipper","ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DPBF3 PE=1 SV=1","K","Transcription","LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Durio zibethinus]"]
["c59913.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: regulation of root development (GO:2000280);; ","--","--","--","--","Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1","K","Transcription","PREDICTED: transcription factor UPBEAT1-like [Gossypium arboreum]"]
["c46990.graph_c0","[T]","Signal transduction mechanisms ","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: intracellular (GO:0005622);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: circumnutation (GO:0010031);; Biological Process: negative regulation of gene expression (GO:0010629);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K12127|3.04023e-81|gra:105788428|K12127 pseudo-response regulator 1 | (RefSeq) two-component response regulator-like APRR1","[K]","Transcription ","CCT motif;; Response regulator receiver domain","Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=APRR1 PE=1 SV=1","K","Transcription","PREDICTED: two-component response regulator-like APRR1 [Gossypium raimondii] "]
["c40398.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","--","--","K","Transcription","WRKY family transcription factor family protein [Theobroma cacao]"]
["c19046.graph_c0","--","--","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to ethylene (GO:0009723);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: negative regulation of gibberellic acid mediated signaling pathway (GO:0009938);; Biological Process: negative regulation of seed germination (GO:0010187);; Biological Process: hyperosmotic salinity response (GO:0042538);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: regulation of seed dormancy process (GO:2000033);; Biological Process: regulation of reactive oxygen species metabolic process (GO:2000377);; ","K14494|1.00512e-11|pper:PRUPE_ppa003206mg|K14494 DELLA protein | (RefSeq) hypothetical protein","--","--","--","DELLA protein RGA2 OS=Brassica campestris OX=3711 GN=RGA2 PE=3 SV=1","K","Transcription","PREDICTED: DELLA protein GAI [Gossypium hirsutum]"]
["c42861.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=ERF13 PE=2 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1-like [Gossypium hirsutum]"]
["c35989.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|4.37805e-99|gra:105780660|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2-like ethylene-responsive transcription factor AIL1","--","--","--","AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana OX=3702 GN=AIL1 PE=2 SV=1","K","Transcription","AP2-like ethylene-responsive transcription factor AIL1 [Gossypium arboreum] "]
["c29400.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|7.30919e-35|gra:105792684|K14431 transcription factor TGA | (RefSeq) transcription factor HBP-1b(c38)-like","--","--","--","Transcription factor TGA9 OS=Arabidopsis thaliana OX=3702 GN=TGA9 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD05791 [Gossypium barbadense]"]
["c39880.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.60249e-76|gra:105770587|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor TINY-like","--","--","AP2 domain","Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor TINY-like [Gossypium raimondii]"]
["c14447.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","PREDICTED: probable WRKY transcription factor 35 isoform X3 [Gossypium hirsutum] "]
["c94324.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nuclear envelope (GO:0005635);; Biological Process: nucleotide-excision repair (GO:0006289);; Biological Process: chromatin remodeling (GO:0006338);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: proteasome regulatory particle, base subcomplex (GO:0008540);; Molecular Function: protein domain specific binding (GO:0019904);; Biological Process: positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968);; Cellular Component: proteasome storage granule (GO:0034515);; Biological Process: proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161);; Biological Process: negative regulation of sequence-specific DNA binding transcription factor activity (GO:0043433);; Biological Process: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly (GO:0045899);; Biological Process: positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091);; Biological Process: nonfunctional rRNA decay (GO:0070651);; Biological Process: proteasome regulatory particle assembly (GO:0070682);; ","K03066|5.01915e-41|gsl:Gasu_39320|K03066 26S proteasome regulatory subunit T6 | (RefSeq) AAA-type ATPase","[O]","Posttranslational modification, protein turnover, chaperones ","--","26S proteasome regulatory subunit 8 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPT6A PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","proteasome regulatory particle base subunit RPT6 [Rhizophagus irregularis DAOM 197198w]"]
["c71689.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","PREDICTED: probable WRKY transcription factor 71 [Gossypium arboreum]"]
["c37802.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Basic leucine zipper 43 OS=Arabidopsis thaliana OX=3702 GN=BZIP43 PE=1 SV=1","K","Transcription","PREDICTED: basic leucine zipper 43-like [Gossypium hirsutum] "]
["c46927.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|7.49764e-13|tcc:TCM_041421|K14431 transcription factor TGA | (RefSeq) BZIP transcription factor family protein isoform 1","--","--","--","--","K","Transcription","hypothetical protein GOBAR_AA36967 [Gossypium barbadense]"]
["c28695.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.36465e-28|gra:105776485|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-12-like","--","--","--","Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana OX=3702 GN=RAP2-12 PE=1 SV=1","K","Transcription","ethylene response factor 1 [Gossypium barbadense]"]
["c44057.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|9.93198e-50|gra:105769573|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-4-like","--","--","--","Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana OX=3702 GN=RAP2-4 PE=1 SV=1","K","Transcription","ethylene-responsive transcription factor RAP2-4-like [Durio zibethinus]"]
["c32561.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|2.13371e-57|jcu:105630792|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT22-like","[K]","Transcription ","Homeobox domain;; Homeobox KN domain","Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HAT22-like [Durio zibethinus]"]
["c62643.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 72 OS=Arabidopsis thaliana OX=3702 GN=WRKY72 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 61 [Gossypium hirsutum]"]
["c20424.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.15321e-27|gra:105769567|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor TINY-like","--","--","--","Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor TINY-like [Gossypium hirsutum]"]
["c41644.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|7.41032e-97|gra:105802247|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT22","[K]","Transcription ","--","Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 PE=1 SV=1","K","Transcription","Homeobox-leucine zipper HAT22 -like protein [Gossypium arboreum]"]
["c93858.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; ","K12236|1.29201e-19|gra:105798658|K12236 transcriptional repressor NF-X1 | (RefSeq) NF-X1-type zinc finger protein NFXL1","[K]","Transcription ","--","NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana OX=3702 GN=NFXL1 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA22362 [Gossypium barbadense]"]
["c29202.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=BZIP2 PE=1 SV=1","S","Function unknown","basic leucine zipper 4-like [Durio zibethinus]"]
["c48396.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|2.39675e-116|gra:105776821|K14431 transcription factor TGA | (RefSeq) transcription factor TGA2-like","--","--","Seed dormancy control;; bZIP transcription factor;; Basic region leucine zipper;; bZIP Maf transcription factor","Transcription factor TGA2.2 OS=Oryza sativa subsp. japonica OX=39947 GN=TGA2.2 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TGA2-like isoform X4 [Gossypium hirsutum] "]
["c41555.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","--","--","--","BES1/BZR1 plant transcription factor, N-terminal;; BES1/BZR1 plant transcription factor, N-terminal","BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana OX=3702 GN=BEH4 PE=1 SV=1","S","Function unknown","BES1/BZR1 homolog protein 4-like isoform X1 [Durio zibethinus] "]
["c21758.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: RNA binding (GO:0003723);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K13162|2.88862e-35|gra:105782377|K13162 poly(rC)-binding protein 2/3/4 | (RefSeq) KH domain-containing protein At4g18375","[AR]","--","KH domain","KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1","S","Function unknown","hypothetical protein B456_013G055200 [Gossypium raimondii]"]
["c56588.graph_c0","--","--","Biological Process: protein import into nucleus, translocation (GO:0000060);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transcription factor binding (GO:0008134);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: maintenance of inflorescence meristem identity (GO:0010077);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","--","MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1","K","Transcription","hypothetical protein POPTR_014G074200v3 [Populus trichocarpa]"]
["c88383.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|8.31086e-24|fve:101293287|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-3","--","--","--","--","K","Transcription","PREDICTED: ethylene-responsive transcription factor RAP2-3 [Fragaria vesca subsp. vesca]"]
["c38935.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","putative homeobox-leucine zipper protein ATHB-51 [Durio zibethinus]"]
["c67138.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.62304e-24|gra:105763936|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-7-like","[K]","Transcription ","Homeobox domain","Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Gossypium raimondii] "]
["c13563.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.49409e-52|gra:105781105|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 3","--","--","AP2 domain","Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ERF7 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 3 [Gossypium arboreum]"]
["c40521.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: beta-amylase activity (GO:0016161);; Biological Process: regulation of shoot system development (GO:0048831);; ","--","--","--","Glycosyl hydrolase family 14","Beta-amylase 8 OS=Arabidopsis thaliana OX=3702 GN=BAM8 PE=1 SV=1","S","Function unknown","PREDICTED: beta-amylase 8 isoform X2 [Gossypium arboreum]"]
["c39659.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor CRF5-like [Gossypium hirsutum]"]
["c47652.graph_c2","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: specification of floral organ identity (GO:0010093);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Floral homeotic protein GLOBOSA OS=Antirrhinum majus OX=4151 GN=GLO PE=1 SV=1","--","--","Glutamine dumper 4 [Theobroma cacao]"]
["c25262.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cell cycle (GO:0007049);; ","K09392|5.63529e-164|gra:105761827|K09392 transcription factor Dp-2 | (RefSeq) transcription factor-like protein DPA","[K]","Transcription ","Transcription factor DP;; E2F/DP family winged-helix DNA-binding domain","Transcription factor-like protein DPA OS=Arabidopsis thaliana OX=3702 GN=DPA PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA18766 [Gossypium barbadense]"]
["c27718.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","WRKY transcription factor 42-like [Carica papaya]"]
["c6194.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","--","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c48372.graph_c0","[K]","Transcription ","Molecular Function: plastid sigma factor activity (GO:0001053);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: tRNA metabolic process (GO:0006399);; Cellular Component: chloroplast (GO:0009507);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: cellular response to light stimulus (GO:0071482);; ","--","--","--","Sigma-70, region 4;; Sigma-70 region 3;; Sigma-70 region 2","RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2","K","Transcription","hypothetical protein B456_007G347300 [Gossypium raimondii]"]
["c31173.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIIA complex (GO:0005672);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: translational initiation (GO:0006413);; ","K03122|2.12115e-16|gra:105770185|K03122 transcription initiation factor TFIIA large subunit | (RefSeq) transcription initiation factor IIA large subunit","--","--","--","--","K","Transcription","Transcription initiation factor IIA subunit 1 [Gossypium arboreum]"]
["c31799.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.59573e-41|tcc:TCM_011279|K09419 heat shock transcription factor, other eukaryote | (RefSeq) Heat shock transcription factor A8, putative","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-8 OS=Arabidopsis thaliana OX=3702 GN=HSFA8 PE=2 SV=1","K","Transcription","Heat shock transcription factor A8, putative [Theobroma cacao]"]
["c65178.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","K14484|3.48674e-16|aip:107618488|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA14","--","--","--","Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1","K","Transcription","PREDICTED: LOW QUALITY PROTEIN: auxin-responsive protein IAA3 [Camelina sativa]"]
["c19325.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","PREDICTED: GATA transcription factor 18-like [Gossypium hirsutum]"]
["c41435.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|0|gra:105780637|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-4b-like","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA4B PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor A-4b-like [Gossypium hirsutum] "]
["c93847.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Protein SCARECROW 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SCR2 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD11406 [Gossypium barbadense]"]
["c87127.graph_c0","--","--","Cellular Component: histone acetyltransferase complex (GO:0000123);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: histone acetylation (GO:0016573);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_025242 [Vitis vinifera]"]
["c16193.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: cell fate commitment (GO:0045165);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: root hair cell differentiation (GO:0048765);; ","K09422|1.24493e-89|gra:105778805|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor WER","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor WER OS=Arabidopsis thaliana OX=3702 GN=WER PE=1 SV=1","K","Transcription","PREDICTED: transcription factor WER [Gossypium raimondii] "]
["c50625.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","S","Function unknown","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis]"]
["c38067.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","O-fucosyltransferase 31 OS=Arabidopsis thaliana OX=3702 GN=OFUT31 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein At1g04910 [Gossypium arboreum]"]
["c36111.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Basic leucine zipper 43 OS=Arabidopsis thaliana OX=3702 GN=BZIP43 PE=1 SV=1","S","Function unknown","PREDICTED: basic leucine zipper 8-like [Gossypium hirsutum]"]
["c44490.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; Molecular Function: oxidoreductase activity (GO:0016491);; ","K09285|1.84909e-150|tcc:TCM_025114|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2 domain-containing transcription factor","--","--","AP2 domain","AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana OX=3702 GN=BBM PE=2 SV=2","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor BBM [Theobroma cacao]"]
["c40330.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","K14503|7.14201e-91|tcc:TCM_000451|K14503 brassinosteroid resistant 1/2 | (RefSeq) Brassinosteroid signaling positive regulator family protein isoform 1","--","--","BES1/BZR1 plant transcription factor, N-terminal","BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana OX=3702 GN=BEH2 PE=1 SV=1","K","Transcription","BES1/BZR1 homolog protein 2-like [Durio zibethinus]"]
["c40331.graph_c0","--","--","Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of defense response (GO:0031347);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 40 OS=Arabidopsis thaliana OX=3702 GN=WRKY40 PE=1 SV=1","K","Transcription","WRKY DNA-binding protein 40, putative isoform 1 [Theobroma cacao]"]
["c32342.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor SHINE 2-like [Durio zibethinus]"]
["c92615.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: seed germination (GO:0009845);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","[K]","Transcription ","--","GATA transcription factor 8 OS=Arabidopsis thaliana OX=3702 GN=GATA8 PE=2 SV=1","K","Transcription","PREDICTED: GATA transcription factor 8 [Fragaria vesca subsp. vesca]"]
["c33703.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","DNA-binding WRKY [Corchorus olitorius]"]
["c33230.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 65 OS=Arabidopsis thaliana OX=3702 GN=WRKY65 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 65 [Gossypium arboreum] "]
["c17092.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: transcription coactivator activity (GO:0003713);; Molecular Function: histone acetyltransferase activity (GO:0004402);; Cellular Component: nucleus (GO:0005634);; Biological Process: chromatin remodeling (GO:0006338);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: positive regulation of histone acetylation (GO:0035066);; ","--","--","--","--","Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1","K","Transcription","transcription factor MYB1R1 [Durio zibethinus]"]
["c86193.graph_c0","[C]","Energy production and conversion ","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Molecular Function: retinal dehydrogenase activity (GO:0001758);; Cellular Component: nucleus (GO:0005634);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: formyltetrahydrofolate dehydrogenase activity (GO:0016155);; Molecular Function: aminobutyraldehyde dehydrogenase activity (GO:0019145);; Molecular Function: aldehyde dehydrogenase (NADP+) activity (GO:0033721);; Molecular Function: 1-pyrroline dehydrogenase activity (GO:0033737);; Molecular Function: 4-trimethylammoniobutyraldehyde dehydrogenase activity (GO:0047105);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00128|1.68468e-13|eus:EUTSA_v10007303mg|K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH2B7 PE=1 SV=2","C","Energy production and conversion","putative aldehyde dehydrogenase-like protein C9E9.09c [Saitoella complicata NRRL Y-17804] "]
["c41064.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 47 OS=Arabidopsis thaliana OX=3702 GN=WRKY47 PE=1 SV=2","K","Transcription","PREDICTED: probable WRKY transcription factor 47 [Gossypium arboreum] "]
["c78188.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.84813e-23|gra:105780637|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-4b-like","--","--","--","--","--","--","PREDICTED: heat stress transcription factor A-4b-like [Gossypium raimondii] "]
["c64656.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","DNA-binding WRKY [Corchorus capsularis]"]
["c70004.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","tify domain","GATA transcription factor 20 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA20 PE=2 SV=1","K","Transcription","PREDICTED: GATA transcription factor 24-like isoform X2 [Gossypium arboreum]"]
["c88976.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","K","Transcription","PREDICTED: uncharacterized protein LOC107929522 [Gossypium hirsutum]"]
["c23484.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana OX=3702 GN=ERF022 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA28680 [Gossypium barbadense]"]
["c58893.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K08064|8.60116e-17|gra:105794462|K08064 nuclear transcription factor Y, alpha | (RefSeq) nuclear transcription factor Y subunit A-5-like","[K]","Transcription ","CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B","Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NFYA5 PE=2 SV=1","K","Transcription","PREDICTED: nuclear transcription factor Y subunit A-5-like [Gossypium hirsutum]"]
["c47079.graph_c1","--","--","Cellular Component: transcription factor TFIIIB complex (GO:0000126);; Molecular Function: TFIIIB-type transcription factor activity (GO:0001026);; Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription from RNA polymerase III promoter (GO:0006359);; ","K15198|2.01076e-163|gra:105799169|K15198 transcription factor TFIIIB component B'' | (RefSeq) transcription factor TFIIIB component B'' homolog","[K]","Transcription ","Myb DNA-binding like;; Myb-like DNA-binding domain","--","K","Transcription","PREDICTED: transcription factor TFIIIB component B&apos;&apos; homolog isoform X1 [Gossypium raimondii] "]
["c35712.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.36856e-18|gra:105770322|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","--","--","--","--","K","Transcription","hypothetical protein GOBAR_DD08023 [Gossypium barbadense]"]
["c33703.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 31 OS=Arabidopsis thaliana OX=3702 GN=WRKY31 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 31 [Theobroma cacao]"]
["c46967.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 PE=2 SV=1","K","Transcription","putative transcription factor PosF21 -like protein [Gossypium arboreum]"]
["c42186.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor SHINE 2-like [Durio zibethinus]"]
["c17182.graph_c0","--","--","Molecular Function: damaged DNA binding (GO:0003684);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906);; Biological Process: base-excision repair (GO:0006284);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","--","--","--","--","--","--","--","hypothetical protein VITISV_036851 [Vitis vinifera]"]
["c94391.graph_c0","--","--","Cellular Component: Doa10p ubiquitin ligase complex (GO:0000837);; Cellular Component: Hrd1p ubiquitin ligase ERAD-L complex (GO:0000839);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: chromatin assembly or disassembly (GO:0006333);; Biological Process: negative regulation of transcription by transcription factor catabolism (GO:0010620);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: ubiquitin-dependent ERAD pathway (GO:0030433);; Biological Process: chromatin silencing at silent mating-type cassette (GO:0030466);; Biological Process: fungal-type cell wall organization (GO:0031505);; ","K10573|1.96157e-23|nnu:104589124|K10573 ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] | (RefSeq) ubiquitin-conjugating enzyme E2 1-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin-conjugating enzyme","Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana OX=3702 GN=UBC12 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","ubiquitin-conjugating enzyme E2 G2-like protein [Mortierella elongata AG-77]"]
["c56905.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.06258e-22|gra:105774594|K09286 EREBP-like factor | (RefSeq) dehydration-responsive element-binding protein 3-like","--","--","--","--","K","Transcription","dehydration-responsive element-binding protein 3-like [Durio zibethinus]"]
["c55022.graph_c0","--","--","Biological Process: protein import into nucleus, translocation (GO:0000060);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transcription factor binding (GO:0008134);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: maintenance of inflorescence meristem identity (GO:0010077);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","K-box region","MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1","K","Transcription","MADS-box protein SOC1-like [Durio zibethinus]"]
["c83879.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cell death (GO:0008219);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: heat acclimation (GO:0010286);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: response to other organism (GO:0051707);; ","K09286|1.71105e-61|ath:AT3G16770|K09286 EREBP-like factor | (RefSeq) EBP; ethylene-responsive element binding protein","--","--","--","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana OX=3702 GN=RAP2-3 PE=1 SV=2","K","Transcription","ethylene-responsive element binding protein [Arabidopsis thaliana] "]
["c50520.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.1274e-55|gra:105778838|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 4-like","--","--","AP2 domain","Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=ERF4 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 4-like [Gossypium raimondii] "]
["c61291.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","--","K","Transcription","GRAS family transcription factor, putative [Theobroma cacao]"]
["c40497.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Scarecrow-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=SCL9 PE=2 SV=1","K","Transcription","scarecrow-like protein 9 [Durio zibethinus]"]
["c27737.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.78654e-35|gra:105778838|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 4-like","--","--","AP2 domain","Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana OX=3702 GN=ERF8 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 4-like [Gossypium raimondii] "]
["c8770.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: metal ion binding (GO:0046872);; ","K12309|2.01101e-53|egr:104424130|K12309 beta-galactosidase [EC:3.2.1.23] | (RefSeq) beta-galactosidase 17","[R]","General function prediction only ","--","Protein indeterminate-domain 1 OS=Arabidopsis thaliana OX=3702 GN=IDD1 PE=1 SV=1","S","Function unknown","hypothetical protein CDL15_Pgr001971 [Punica granatum]"]
["c31799.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|2.34518e-120|tcc:TCM_011279|K09419 heat shock transcription factor, other eukaryote | (RefSeq) Heat shock transcription factor A8, putative","[K]","Transcription ","--","Heat stress transcription factor A-8 OS=Arabidopsis thaliana OX=3702 GN=HSFA8 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD35807 [Gossypium barbadense]"]
["c48507.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: maintenance of root meristem identity (GO:0010078);; Biological Process: stele development (GO:0010479);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","bHLH-MYC and R2R3-MYB transcription factors N-terminal","Transcription factor LHW OS=Arabidopsis thaliana OX=3702 GN=LHW PE=1 SV=1","S","Function unknown","hypothetical protein B456_006G115500, partial [Gossypium raimondii]"]
["c42487.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana OX=3702 GN=At4g13040 PE=2 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 [Gossypium hirsutum] "]
["c32789.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: RNA polymerase II transcription factor binding (GO:0001085);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: transcription from RNA polymerase II promoter (GO:0006366);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell differentiation (GO:0030154);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=2 SV=2","K","Transcription","PREDICTED: GATA transcription factor 18-like [Gossypium arboreum] "]
["c60771.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: defense response (GO:0006952);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; ","K14516|1.36153e-72|gra:105792307|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 15-like","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 15-like [Gossypium arboreum]"]
["c59629.graph_c0","--","--","Biological Process: defense response to oomycetes (GO:0002229);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: regulation of salicylic acid biosynthetic process (GO:0080142);; Biological Process: positive regulation of defense response to bacterium (GO:1900426);; ","--","--","--","--","Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana OX=3702 GN=SARD1 PE=1 SV=1","S","Function unknown","protein SAR DEFICIENT 1-like [Durio zibethinus]"]
["c22296.graph_c0","--","--","Molecular Function: transcription regulatory region sequence-specific DNA binding (GO:0000976);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","--","--","--","No apical meristem (NAM) protein","NAC domain containing protein 50 OS=Arabidopsis thaliana OX=3702 GN=NAC050 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD16905 [Gossypium barbadense]"]
["c45894.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","--","--","hypothetical protein B456_009G183900 [Gossypium raimondii]"]
["c40042.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[L]","Replication, recombination and repair ","Domain of unknown function (DUF4413)","Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1","S","Function unknown","PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Gossypium raimondii] "]
["c38151.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 46 OS=Arabidopsis thaliana OX=3702 GN=WRKY46 PE=2 SV=1","K","Transcription","WRKY90 [Gossypium aridum]"]
["c16463.graph_c0","--","--","Biological Process: negative regulation of transcription from RNA polymerase II promoter (GO:0000122);; Molecular Function: core promoter sequence-specific DNA binding (GO:0001046);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: atrichoblast differentiation (GO:0010055);; Biological Process: regulation of response to nutrient levels (GO:0032107);; Biological Process: regulation of DNA-templated transcription in response to stress (GO:0043620);; Biological Process: lateral root development (GO:0048527);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 75 OS=Arabidopsis thaliana OX=3702 GN=WRKY75 PE=2 SV=1","K","Transcription","probable WRKY transcription factor 43 [Durio zibethinus]"]
["c47814.graph_c2","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Zinc-finger double-stranded RNA-binding;; Zinc-finger of C2H2 type","Protein indeterminate-domain 1 OS=Arabidopsis thaliana OX=3702 GN=IDD1 PE=1 SV=1","S","Function unknown","PREDICTED: protein indeterminate-domain 7-like [Gossypium arboreum]"]
["c35268.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD34409 [Gossypium barbadense]"]
["c30693.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 72 OS=Arabidopsis thaliana OX=3702 GN=WRKY72 PE=2 SV=1","K","Transcription","WRKY107 [Gossypium aridum]"]
["c10498.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[K]","Transcription ","Myb/SANT-like DNA-binding domain","Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 SV=1","S","Function unknown","hypothetical protein CCACVL1_24183 [Corchorus capsularis]"]
["c2577.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Molecular Function: transcription factor activity, RNA polymerase II transcription factor recruiting (GO:0001135);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: multicellular organism development (GO:0007275);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to gibberellin (GO:0009739);; Biological Process: response to salicylic acid (GO:0009751);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: blue light signaling pathway (GO:0009785);; Biological Process: cell differentiation (GO:0030154);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","K09422|1.29342e-30|bvg:104898639|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor RAX2","[K]","Transcription ","Myb-like DNA-binding domain","Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor RAX2 [Beta vulgaris subsp. vulgaris] "]
["c58323.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: cell proliferation (GO:0008283);; Biological Process: response to auxin (GO:0009733);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: shoot system morphogenesis (GO:0010016);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: root development (GO:0048364);; ","K09338|8.82188e-12|gra:105765083|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT4-like","--","--","--","--","--","--","hypothetical protein GOBAR_AA08812 [Gossypium barbadense]"]
["c62905.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: proteolysis (GO:0006508);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2A PE=2 SV=1","K","Transcription","dehydration-responsive element-binding protein 2A-like [Durio zibethinus]"]
["c81295.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana OX=3702 GN=ERF062 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF062-like [Gossypium raimondii] "]
["c82207.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast stroma (GO:0009570);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RCA PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","RuBisCO activase small isoform precursor [Oryza sativa] "]
["c47948.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to abscisic acid (GO:0009737);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","bHLH-MYC and R2R3-MYB transcription factors N-terminal;; Helix-loop-helix DNA-binding domain","Transcription factor bHLH13 OS=Arabidopsis thaliana OX=3702 GN=BHLH13 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor bHLH13 [Gossypium raimondii] "]
["c41794.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","C2H2-type zinc finger","Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1","K","Transcription","transcriptional regulator SUPERMAN-like [Durio zibethinus]"]
["c29938.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","--","GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2","K","Transcription","putative GATA transcription factor 22 [Durio zibethinus]"]
["c33435.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","WRKY transcription factor 42 OS=Arabidopsis thaliana OX=3702 GN=WRKY42 PE=1 SV=1","K","Transcription","probable WRKY transcription factor 31 [Gossypium hirsutum] "]
["c22747.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=BZIP11 PE=1 SV=1","K","Transcription","Basic-leucine zipper transcription factor [Parasponia andersonii]"]
["c4646.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: lateral root development (GO:0048527);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2","K","Transcription","PREDICTED: GATA transcription factor 15-like [Gossypium arboreum] "]
["c914.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 50 OS=Arabidopsis thaliana OX=3702 GN=WRKY50 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 71 [Gossypium hirsutum]"]
["c47583.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K18835|0|gra:105790263|K18835 WRKY transcription factor 2 | (RefSeq) probable WRKY transcription factor 2","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=WRKY2 PE=1 SV=1","K","Transcription","hypothetical protein B456_004G034600 [Gossypium raimondii]"]
["c40239.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 49 OS=Arabidopsis thaliana OX=3702 GN=WRKY49 PE=2 SV=1","K","Transcription","probable WRKY transcription factor 49 [Durio zibethinus]"]
["c46322.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=BZIP17 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_DD29108 [Gossypium barbadense]"]
["c41506.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|7.77536e-146|gra:105784488|K09264 MADS-box transcription factor, plant | (RefSeq) truncated transcription factor CAULIFLOWER A-like","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","Floral homeotic protein APETALA 1 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=AP1 PE=3 SV=1","K","Transcription","PREDICTED: truncated transcription factor CAULIFLOWER A-like [Gossypium hirsutum] "]
["c25706.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14516|9.96872e-58|gra:105784427|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium raimondii] "]
["c44656.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|1.00442e-100|gra:105802115|K09264 MADS-box transcription factor, plant | (RefSeq) truncated transcription factor CAULIFLOWER A-like","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS6 PE=1 SV=1","K","Transcription","hypothetical protein B456_007G043400 [Gossypium raimondii]"]
["c85106.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","K-box region","MADS-box protein EJ2 OS=Solanum lycopersicum OX=4081 GN=EJ2 PE=1 SV=1","--","--","conserved hypothetical protein [Ricinus communis]"]
["c67039.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: potassium ion transmembrane transport (GO:0071805);; ","K03549|8.46105e-39|pmum:103338808|K03549 KUP system potassium uptake protein | (RefSeq) potassium transporter 2","--","--","K+ potassium transporter","Potassium transporter 2 OS=Arabidopsis thaliana OX=3702 GN=POT2 PE=1 SV=2","P","Inorganic ion transport and metabolism","NF-X1-type zinc finger protein NFXL1 [Carica papaya]"]
["c41747.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: transcription factor binding (GO:0008134);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: protein ubiquitination (GO:0016567);; Biological Process: negative regulation of defense response to bacterium (GO:1900425);; Biological Process: positive regulation of transcription factor catabolic process (GO:1901485);; ","K10144|2.55998e-176|gra:105796812|K10144 RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] | (RefSeq) RING finger and CHY zinc finger domain-containing protein 1-like","[R]","General function prediction only ","CHY zinc finger;; Zinc-ribbon;; Ring finger domain;; Zinc finger, C3HC4 type (RING finger)","E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1","S","Function unknown","PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Gossypium raimondii] "]
["c29422.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain)","Agamous-like MADS-box protein AGL30 OS=Arabidopsis thaliana OX=3702 GN=AGL30 PE=1 SV=1","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL65 [Theobroma cacao] "]
["c26282.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=2 SV=1","--","--","ethylene-responsive transcription factor ERF003-like [Quercus suber]"]
["c4540.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana OX=3702 GN=DREB1D PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF024-like [Gossypium hirsutum]"]
["c26737.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|5.94422e-136|gra:105798483|K09264 MADS-box transcription factor, plant | (RefSeq) MADS-box transcription factor 6-like","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS6 PE=1 SV=1","K","Transcription","PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 [Gossypium hirsutum]"]
["c55100.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03129|1.35074e-49|gra:105785181|K03129 transcription initiation factor TFIID subunit 4 | (RefSeq) transcription initiation factor TFIID subunit 4b-like","--","--","--","Transcription initiation factor TFIID subunit 4b OS=Arabidopsis thaliana OX=3702 GN=TAF4B PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA14914 [Gossypium barbadense]"]
["c29310.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","Homeobox domain;; Homeobox associated leucine zipper","Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana OX=3702 GN=ATHB-51 PE=2 SV=2","K","Transcription","hypothetical protein CCACVL1_01539 [Corchorus capsularis]"]
["c44766.graph_c0","--","--","Biological Process: cell fate specification (GO:0001708);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: specification of floral organ identity (GO:0010093);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: plant ovule development (GO:0048481);; Biological Process: specification of floral organ number (GO:0048833);; ","--","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Theobroma cacao] "]
["c64330.graph_c0","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|1.09873e-26|tcc:TCM_037098|K14491 two-component response regulator ARR-B family | (RefSeq) Type-b response regulator, putative","--","--","--","--","T","Signal transduction mechanisms","PREDICTED: two-component response regulator ARR18 [Theobroma cacao] "]
["c39726.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09060|7.22444e-10|gra:105791891|K09060 plant G-box-binding factor | (RefSeq) transcription factor HBP-1a","--","--","--","--","--","--","hypothetical protein GOBAR_DD35433 [Gossypium barbadense]"]
["c44194.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.79776e-171|gra:105776485|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-12-like","[B]","Chromatin structure and dynamics ","AP2 domain;; Core histone H2A/H2B/H3/H4","Histone H3.2 OS=Triticum aestivum OX=4565 PE=1 SV=2","K","Transcription","ethylene-responsive transcription factor RAP2-12-like [Gossypium hirsutum] "]
["c38935.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","Homeobox domain","Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana OX=3702 GN=ATHB-51 PE=2 SV=2","K","Transcription","PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X1 [Theobroma cacao]"]
["c75180.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09338|8.64116e-14|mdm:103405460|K09338 homeobox-leucine zipper protein | (RefSeq) HD1; homeobox-leucine zipper protein HAT22-like","[K]","Transcription ","--","Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana OX=3702 GN=HAT9 PE=1 SV=2","K","Transcription","homeobox-leucine zipper protein HAT22-like [Malus domestica] "]
["c36786.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","[K]","Transcription ","--","Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 SV=1","K","Transcription","PREDICTED: trihelix transcription factor GT-1 isoform X1 [Ziziphus jujuba]"]
["c60072.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transaminase activity (GO:0008483);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.19509e-21|gra:105787815|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","--","--","--","--","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Gossypium hirsutum]"]
["c59396.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|2.83414e-27|gra:105785239|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT22-like","[K]","Transcription ","--","Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein HAT22-like [Gossypium raimondii] "]
["c59030.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana OX=3702 GN=ERF053 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF054-like [Gossypium hirsutum]"]
["c37506.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.24485e-124|gra:105765076|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 2","--","--","AP2 domain","Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana OX=3702 GN=ERF1A PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 2 [Gossypium raimondii] "]
["c43928.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 57 OS=Arabidopsis thaliana OX=3702 GN=WRKY57 PE=2 SV=1","K","Transcription","WRKY117 [Gossypium aridum]"]
["c83959.graph_c0","[P]","Inorganic ion transport and metabolism ","Biological Process: age-dependent response to reactive oxygen species involved in chronological cell aging (GO:0001320);; Molecular Function: superoxide dismutase activity (GO:0004784);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrial intermembrane space (GO:0005758);; Cellular Component: cytosol (GO:0005829);; Biological Process: cellular copper ion homeostasis (GO:0006878);; Biological Process: cellular zinc ion homeostasis (GO:0006882);; Biological Process: removal of superoxide radicals (GO:0019430);; Biological Process: fungal-type cell wall organization (GO:0031505);; Biological Process: positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress (GO:0036091);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: protein stabilization (GO:0050821);; Biological Process: positive regulation of sequence-specific DNA binding transcription factor activity (GO:0051091);; Biological Process: negative regulation of cellular respiration (GO:1901856);; ","K04565|6.36031e-28|zma:542260|K04565 superoxide dismutase, Cu-Zn family [EC:1.15.1.1] | (RefSeq) sod2, GRMZM2G025992, SODCC.1; superoxide dismutase 2","[P]","Inorganic ion transport and metabolism ","Copper/zinc superoxide dismutase (SODC)","Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra OX=59294 GN=SODCC PE=2 SV=3","P","Inorganic ion transport and metabolism","copper/zinc superoxide dismutase [Basidiobolus meristosporus CBS 931.73]"]
["c71277.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: pollen sperm cell differentiation (GO:0048235);; ","--","[R]","General function prediction only ","C2H2-type zinc finger","Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1","S","Function unknown","PREDICTED: zinc finger protein ZAT3 [Theobroma cacao] "]
["c36618.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|2.71387e-104|tcc:TCM_024565|K09419 heat shock transcription factor, other eukaryote | (RefSeq) Heat shock factor protein, putative","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor B-3 OS=Arabidopsis thaliana OX=3702 GN=HSFB3 PE=1 SV=1","K","Transcription","heat stress transcription factor B-3 [Herrania umbratica]"]
["c38439.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2","K","Transcription","PREDICTED: GATA transcription factor 15-like [Gossypium raimondii] "]
["c38057.graph_c0","--","--","Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: red or far-red light signaling pathway (GO:0010017);; Biological Process: regulation of photomorphogenesis (GO:0010099);; Biological Process: response to UV-B (GO:0010224);; Biological Process: positive regulation of anthocyanin metabolic process (GO:0031539);; Biological Process: positive regulation of circadian rhythm (GO:0042753);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K16241|1.03862e-66|gra:105792837|K16241 transcription factor HY5 | (RefSeq) transcription factor HY5","[K]","Transcription ","bZIP transcription factor;; Basic region leucine zipper","Transcription factor HY5 OS=Arabidopsis thaliana OX=3702 GN=HY5 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor HY5 [Gossypium raimondii] "]
["c51734.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K08066|8.3671e-109|tcc:TCM_019356|K08066 nuclear transcription factor Y, gamma | (RefSeq) Nuclear factor Y, putative isoform 1","[K]","Transcription ","Histone-like transcription factor (CBF/NF-Y) and archaeal histone;; Core histone H2A/H2B/H3/H4","Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana OX=3702 GN=NFYC2 PE=1 SV=2","K","Transcription","PREDICTED: nuclear transcription factor Y subunit C-3-like [Gossypium hirsutum]"]
["c32759.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","K14503|7.26439e-12|tcc:TCM_000451|K14503 brassinosteroid resistant 1/2 | (RefSeq) Brassinosteroid signaling positive regulator family protein isoform 1","--","--","BES1/BZR1 plant transcription factor, N-terminal","BES1/BZR1 homolog protein 1 OS=Arabidopsis thaliana OX=3702 GN=BEH1 PE=1 SV=1","K","Transcription","BZR1, transcriptional repressor [Corchorus olitorius]"]
["c51346.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.66017e-54|gra:105777318|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-3","--","--","--","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana OX=3702 GN=RAP2-3 PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor RAP2-3 [Gossypium arboreum] "]
["c24859.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor WIN1 [Theobroma cacao]"]
["c56612.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|6.80046e-46|gra:105795132|K09264 MADS-box transcription factor, plant | (RefSeq) MADS-box transcription factor 23-like","[K]","Transcription ","K-box region","MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS27 PE=2 SV=2","K","Transcription","hypothetical protein B456_005G227200 [Gossypium raimondii]"]
["c46880.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09284|1.34058e-79|gra:105786446|K09284 AP2-like factor, euAP2 lineage | (RefSeq) floral homeotic protein APETALA 2-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana OX=3702 GN=RAP2-7 PE=2 SV=2","K","Transcription","hypothetical protein GOBAR_DD11636 [Gossypium barbadense]"]
["c29725.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.26586e-34|gra:105791446|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor ERF071-like","--","--","--","Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana OX=3702 GN=RAP2-2 PE=1 SV=2","K","Transcription","Ethylene-responsive transcription factor RAP2-3 -like protein [Gossypium arboreum]"]
["c32908.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 46 OS=Arabidopsis thaliana OX=3702 GN=WRKY46 PE=2 SV=1","K","Transcription","probable WRKY transcription factor 46 [Durio zibethinus]"]
["c31114.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","hypothetical protein GOBAR_AA22890 [Gossypium barbadense]"]
["c52742.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 51 OS=Arabidopsis thaliana OX=3702 GN=WRKY51 PE=1 SV=1","K","Transcription","probable WRKY transcription factor 51 [Durio zibethinus]"]
["c41584.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana OX=3702 GN=TT16 PE=1 SV=1","K","Transcription","PREDICTED: protein TRANSPARENT TESTA 16 [Theobroma cacao] "]
["c35172.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.07964e-90|gra:105763912|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor ERF023-like","--","--","AP2 domain","Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana OX=3702 GN=ERF023 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF023-like [Gossypium arboreum]"]
["c68335.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.85611e-19|gra:105777710|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-4a-like","--","--","--","--","K","Transcription","PREDICTED: heat stress transcription factor A-4a-like [Gossypium hirsutum] "]
["c43049.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","Myb/SANT-like DNA-binding domain;; Myb-like DNA-binding domain","Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=1 SV=1","K","Transcription","PREDICTED: trihelix transcription factor GT-3b-like [Gossypium hirsutum]"]
["c48082.graph_c2","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[J]","Translation, ribosomal structure and biogenesis ","Plant zinc cluster domain;; WRKY DNA -binding domain;; Ribosomal protein S19","40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD34939 [Gossypium barbadense]"]
["c10566.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Basic leucine zipper 43 OS=Arabidopsis thaliana OX=3702 GN=BZIP43 PE=1 SV=1","K","Transcription","PREDICTED: basic leucine zipper 43-like [Gossypium raimondii] "]
["c60484.graph_c0","--","--","Biological Process: defense response to oomycetes (GO:0002229);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: regulation of salicylic acid biosynthetic process (GO:0080142);; Biological Process: positive regulation of defense response to bacterium (GO:1900426);; ","--","--","--","--","--","S","Function unknown","protein SAR DEFICIENT 1-like [Durio zibethinus]"]
["c29423.graph_c0","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|3.6571e-16|gra:105770299|K14491 two-component response regulator ARR-B family | (RefSeq) two-component response regulator ARR12","--","--","--","Two-component response regulator ORR22 OS=Oryza sativa subsp. indica OX=39946 GN=RR22 PE=3 SV=1","T","Signal transduction mechanisms","two-component response regulator ARR18 [Herrania umbratica]"]
["c43183.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.17001e-145|gra:105792036|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 5-like","--","--","AP2 domain","Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=ERF5 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor 5-like [Gossypium raimondii] "]
["c63348.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cell death (GO:0008219);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: response to jasmonic acid (GO:0009753);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: heat acclimation (GO:0010286);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: response to other organism (GO:0051707);; ","K09286|9.56705e-62|ath:AT3G16770|K09286 EREBP-like factor | (RefSeq) EBP; ethylene-responsive element binding protein","--","--","--","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana OX=3702 GN=RAP2-3 PE=1 SV=2","K","Transcription","ethylene-responsive element binding protein [Arabidopsis thaliana] "]
["c27639.graph_c1","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03126|1.34526e-34|gra:105776895|K03126 transcription initiation factor TFIID subunit 12 | (RefSeq) transcription initiation factor TFIID subunit 12b-like","[K]","Transcription ","Transcription initiation factor TFIID subunit A","Transcription initiation factor TFIID subunit 12b OS=Arabidopsis thaliana OX=3702 GN=TAF12B PE=1 SV=1","K","Transcription","PREDICTED: transcription initiation factor TFIID subunit 12b-like isoform X2 [Gossypium raimondii]"]
["c25821.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","--","--","--","--","--","K","Transcription","WRKY DNA-binding protein 57 isoform 1 [Theobroma cacao] "]
["c50148.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09287|3.408e-36|tcc:TCM_011862|K09287 RAV-like factor | (RefSeq) AP2 domain class transcription factor","--","--","--","AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana OX=3702 GN=TEM1 PE=1 SV=1","K","Transcription","hypothetical protein CCACVL1_07466 [Corchorus capsularis]"]
["c25058.graph_c1","--","--","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: photomorphogenesis (GO:0009640);; ","--","--","--","--","B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2","S","Function unknown","PREDICTED: B-box zinc finger protein 25 isoform X1 [Theobroma cacao]"]
["c41932.graph_c0","--","--","Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: mediator complex (GO:0016592);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K15151|7.91319e-88|gra:105765351|K15151 mediator of RNA polymerase II transcription subunit 10 | (RefSeq) mediator of RNA polymerase II transcription subunit 10b","[K]","Transcription ","Transcription factor subunit Med10 of Mediator complex;; Homeobox domain;; Homeobox associated leucine zipper;; Homeobox KN domain","Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1","K","Transcription","PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X2 [Gossypium arboreum] "]
["c25744.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: defense response (GO:0006952);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; ","K14516|3.30264e-80|gra:105803199|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium hirsutum] "]
["c38848.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|1.19485e-17|jcu:105640937|K14432 ABA responsive element binding factor | (RefSeq) G-box-binding factor 4","--","--","bZIP transcription factor;; Basic region leucine zipper","G-box-binding factor 4 OS=Arabidopsis thaliana OX=3702 GN=GBF4 PE=1 SV=1","K","Transcription","G-box-binding factor 4 isoform X1 [Jatropha curcas] "]
["c50347.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana OX=3702 GN=DREB2G PE=1 SV=1","K","Transcription","PREDICTED: dehydration-responsive element-binding protein 2D-like [Gossypium arboreum]"]
["c46905.graph_c0","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K14491|0|tcc:TCM_021300|K14491 two-component response regulator ARR-B family | (RefSeq) Sensor histidine kinase, putative isoform 1","[K]","Transcription ","Myb-like DNA-binding domain","Two-component response regulator ARR1 OS=Arabidopsis thaliana OX=3702 GN=ARR1 PE=1 SV=2","T","Signal transduction mechanisms","two-component response regulator ARR2-like [Herrania umbratica]"]
["c42908.graph_c4","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14516|3.03866e-81|gra:105796722|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium arboreum] "]
["c48364.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain;; WRKY DNA -binding domain","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","PREDICTED: WRKY transcription factor 6-like [Gossypium raimondii] "]
["c43318.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","K08064|3.01251e-35|tcc:TCM_029103|K08064 nuclear transcription factor Y, alpha | (RefSeq) Nuclear transcription factor Y subunit A-3, putative isoform 1","--","--","--","--","--","--","nuclear transcription factor Y subunit A-3-like isoform X2 [Durio zibethinus]"]
["c10637.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 75 OS=Arabidopsis thaliana OX=3702 GN=WRKY75 PE=2 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 75 [Gossypium hirsutum]"]
["c47421.graph_c2","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Biological Process: pollen tube growth (GO:0009860);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: regulation of sequence-specific DNA binding transcription factor activity (GO:0051090);; ","K03131|7.90185e-81|gra:105790062|K03131 transcription initiation factor TFIID subunit 6 | (RefSeq) transcription initiation factor TFIID subunit 6","[K]","Transcription ","TATA box binding protein associated factor (TAF)","Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1","K","Transcription","PREDICTED: transcription initiation factor TFIID subunit 6 [Gossypium raimondii] "]
["c33435.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 31 [Gossypium raimondii] "]
["c36559.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana OX=3702 GN=DREB2D PE=2 SV=1","K","Transcription","PREDICTED: dehydration-responsive element-binding protein 2D-like [Gossypium arboreum]"]
["c662.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 51 OS=Arabidopsis thaliana OX=3702 GN=WRKY51 PE=1 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 51 [Gossypium hirsutum]"]
["c37336.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD03478 [Gossypium barbadense]"]
["c95227.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.50809e-17|gra:105780637|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-4b-like","[K]","Transcription ","--","Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica OX=39947 GN=HSFA2C PE=1 SV=2","K","Transcription","PREDICTED: heat stress transcription factor A-4b-like [Gossypium hirsutum] "]
["c39941.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: cell death (GO:0008219);; Biological Process: heat acclimation (GO:0010286);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K09286|2.03547e-99|gra:105777318|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-3","--","--","--","Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana OX=3702 GN=RAP2-3 PE=1 SV=2","K","Transcription","putative ethylene responsive element binding protein 2 [Gossypium hirsutum]"]
["c92711.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: 6-phosphofructokinase activity (GO:0003872);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: glycolytic process through fructose-6-phosphate (GO:0061615);; ","K09419|3.60908e-23|mtr:MTR_2g100670|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat shock transcription factor A8","--","--","--","--","G","Carbohydrate transport and metabolism","heat shock transcription factor A8 [Medicago truncatula] "]
["c38768.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=BZIP2 PE=1 SV=1","K","Transcription","PREDICTED: bZIP transcription factor 53-like [Gossypium hirsutum]"]
["c74142.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","--","GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=2 SV=2","K","Transcription","GATA transcription factor 18-like [Durio zibethinus]"]
["c8761.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","C2H2-type zinc finger","Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1","S","Function unknown","PREDICTED: probable transcriptional regulator RABBIT EARS [Gossypium hirsutum] "]
["c48433.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: red, far-red light phototransduction (GO:0009585);; Biological Process: response to far red light (GO:0010218);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: positive regulation of circadian rhythm (GO:0042753);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","MULE transposase domain;; FAR1 DNA-binding domain;; SWIM zinc finger","Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana OX=3702 GN=FHY3 PE=1 SV=1","S","Function unknown","PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 [Gossypium raimondii] "]
["c39120.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|1.16617e-127|tcc:TCM_011475|K09264 MADS-box transcription factor, plant | (RefSeq) K-box region and MADS-box transcription factor family protein","[K]","Transcription ","K-box region;; SRF-type transcription factor (DNA-binding and dimerisation domain)","Floral homeotic protein APETALA 1 OS=Sinapis alba OX=3728 GN=AP1 PE=2 SV=1","K","Transcription","truncated transcription factor CAULIFLOWER A-like isoform X2 [Durio zibethinus]"]
["c49241.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03129|0|gra:105770122|K03129 transcription initiation factor TFIID subunit 4 | (RefSeq) transcription initiation factor TFIID subunit 4b-like","[K]","Transcription ","RCD1-SRO-TAF4 (RST) plant domain;; Transcription initiation factor TFIID component TAF4 family","Transcription initiation factor TFIID subunit 4b OS=Arabidopsis thaliana OX=3702 GN=TAF4B PE=1 SV=1","K","Transcription","PREDICTED: transcription initiation factor TFIID subunit 4b-like isoform X2 [Gossypium hirsutum]"]
["c46639.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: transcription coactivator activity (GO:0003713);; Molecular Function: histone acetyltransferase activity (GO:0004402);; Cellular Component: nucleus (GO:0005634);; Biological Process: chromatin remodeling (GO:0006338);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cold acclimation (GO:0009631);; Biological Process: response to auxin (GO:0009733);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: positive regulation of histone acetylation (GO:0035066);; Biological Process: regulation of cell proliferation (GO:0042127);; ","K11314|0|gra:105798923|K11314 transcriptional adapter 2-alpha | (RefSeq) transcriptional adapter ADA2b","[B]","Chromatin structure and dynamics ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcriptional adapter ADA2b OS=Arabidopsis thaliana OX=3702 GN=ADA2B PE=1 SV=1","B","Chromatin structure and dynamics","hypothetical protein B456_006G082300 [Gossypium raimondii]"]
["c25861.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transaminase activity (GO:0008483);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|5.20706e-111|gra:105763539|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","[K]","Transcription ","Homeobox associated leucine zipper;; Homeobox domain","Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana OX=3702 GN=ATHB-16 PE=2 SV=2","K","Transcription","hypothetical protein B456_008G091100 [Gossypium raimondii]"]
["c37940.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana OX=3702 GN=ERF038 PE=2 SV=1","K","Transcription","Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]"]
["c45633.graph_c2","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: indeterminate inflorescence morphogenesis (GO:0048283);; Biological Process: seed development (GO:0048316);; Biological Process: plant ovule development (GO:0048481);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: regulation of double fertilization forming a zygote and endosperm (GO:0080155);; ","K09264|7.72733e-65|gra:105770656|K09264 MADS-box transcription factor, plant | (RefSeq) agamous-like MADS-box protein AGL11","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1","K","Transcription","agamous-like MADS-box protein AGL11 isoform X3 [Durio zibethinus]"]
["c59860.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica OX=39947 GN=DREB1F PE=3 SV=1","K","Transcription","hypothetical protein GOBAR_DD01353 [Gossypium barbadense] "]
["c42418.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: far-red light signaling pathway (GO:0010018);; Biological Process: positive regulation of circadian rhythm (GO:0042753);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","FAR1 DNA-binding domain;; MULE transposase domain;; SWIM zinc finger","Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1","S","Function unknown","PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 [Gossypium arboreum] "]
["c22645.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana OX=3702 GN=AGL18 PE=1 SV=1","K","Transcription","agamous-like MADS-box protein AGL18 [Durio zibethinus]"]
["c57665.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to auxin (GO:0009733);; Biological Process: regulation of ethylene-activated signaling pathway (GO:0010104);; ","K09286|1.40224e-28|gra:105777673|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 4-like","--","--","AP2 domain","Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ERF4 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor, partial [Gossypium hirsutum]"]
["c28475.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: iron ion homeostasis (GO:0055072);; Cellular Component: RNA polymerase II transcription factor complex (GO:0090575);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor ORG2 OS=Arabidopsis thaliana OX=3702 GN=ORG2 PE=1 SV=1","K","Transcription","transcription factor bHLH100-like [Durio zibethinus]"]
["c37321.graph_c0","--","--","Molecular Function: AT DNA binding (GO:0003680);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: skotomorphogenesis (GO:0009647);; Biological Process: flower development (GO:0009908);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Molecular Function: histone deacetylase binding (GO:0042826);; Molecular Function: protein self-association (GO:0043621);; ","--","--","--","Domain of unknown function (DUF296)","AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana OX=3702 GN=AHL22 PE=1 SV=1","S","Function unknown","AT-hook motif nuclear-localized protein 22 [Sesamum indicum]"]
["c40871.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1","K","Transcription","hypothetical protein CCACVL1_16802 [Corchorus capsularis]"]
["c12599.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","SCARECROW-LIKE protein 7 OS=Populus euphratica OX=75702 GN=SCL7 PE=2 SV=1","S","Function unknown","PREDICTED: scarecrow-like protein 21 [Gossypium hirsutum]"]
["c42342.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.43263e-91|gra:105791446|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor ERF071-like","--","--","--","Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana OX=3702 GN=ERF071 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF071-like isoform X1 [Gossypium raimondii] "]
["c44625.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 35 OS=Arabidopsis thaliana OX=3702 GN=WRKY35 PE=2 SV=1","K","Transcription","probable WRKY transcription factor 14 [Gossypium hirsutum] "]
["c40509.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.39225e-83|gra:105788040|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor TINY","--","--","AP2 domain","Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor TINY [Gossypium raimondii] "]
["c120.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper;; bZIP Maf transcription factor","Basic leucine zipper 4 OS=Arabidopsis thaliana OX=3702 GN=BZIP4 PE=1 SV=1","S","Function unknown","PREDICTED: basic leucine zipper 8-like [Gossypium hirsutum]"]
["c30725.graph_c0","[X]","Mobilome: prophages, transposons","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","--","[R]","General function prediction only ","--","Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1","S","Function unknown","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Apostasia shenzhenica]"]
["c44647.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Zinc-finger double-stranded RNA-binding","Protein indeterminate-domain 1 OS=Arabidopsis thaliana OX=3702 GN=IDD1 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD03773 [Gossypium barbadense]"]
["c53258.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to osmotic stress (GO:0006970);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: single-organism process (GO:0044699);; ","--","--","--","bZIP transcription factor","Basic leucine zipper 1 OS=Arabidopsis thaliana OX=3702 GN=BZIP1 PE=1 SV=1","K","Transcription","PREDICTED: basic leucine zipper 1-like [Gossypium arboreum]"]
["c50473.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA34161 [Gossypium barbadense]"]
["c59253.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","--","--","putative WRKY transcription factor 65 -like protein [Gossypium arboreum]"]
["c39780.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 41 OS=Arabidopsis thaliana OX=3702 GN=WRKY41 PE=2 SV=2","K","Transcription","PREDICTED: probable WRKY transcription factor 53 [Gossypium arboreum]"]
["c5233.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 61 OS=Arabidopsis thaliana OX=3702 GN=WRKY61 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD31645 [Gossypium barbadense]"]
["c19017.graph_c0","--","--","Molecular Function: translation repressor activity, nucleic acid binding (GO:0000900);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to temperature stimulus (GO:0009266);; Biological Process: negative regulation of flower development (GO:0009910);; Biological Process: negative regulation of translation (GO:0017148);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: floral whorl development (GO:0048438);; ","--","--","--","--","--","K","Transcription","PREDICTED: MADS-box protein JOINTLESS isoform X1 [Theobroma cacao]"]
["c92647.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: defense response to fungus (GO:0050832);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 50 OS=Arabidopsis thaliana OX=3702 GN=WRKY50 PE=2 SV=1","K","Transcription","probable WRKY transcription factor 50 [Sesamum indicum]"]
["c53992.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09060|2.00878e-08|tcc:TCM_016606|K09060 plant G-box-binding factor | (RefSeq) BZIP domain class transcription factor isoform 1","--","--","--","--","--","--","Transcription factor HBP-1a [Gossypium arboreum]"]
["c33728.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.20232e-31|pmum:103329986|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-20-like","[K]","Transcription ","Homeobox associated leucine zipper;; Homeobox domain","Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana OX=3702 GN=ATHB-13 PE=2 SV=2","K","Transcription","hypothetical protein DCAR_006726 [Daucus carota subsp. sativus]"]
["c42509.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K08064|2.82422e-73|gra:105761685|K08064 nuclear transcription factor Y, alpha | (RefSeq) nuclear transcription factor Y subunit A-10-like","[K]","Transcription ","CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B","Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana OX=3702 GN=NFYA2 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA16114 [Gossypium barbadense]"]
["c45285.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09391|3.37993e-163|gra:105791108|K09391 transcription factor E2F7/8 | (RefSeq) E2F transcription factor-like E2FE","[K]","Transcription ","E2F/DP family winged-helix DNA-binding domain","E2F transcription factor-like E2FE OS=Arabidopsis thaliana OX=3702 GN=E2FE PE=1 SV=1","K","Transcription","PREDICTED: E2F transcription factor-like E2FE isoform X2 [Gossypium raimondii]"]
["c29607.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|0|gra:105794427|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2-like ethylene-responsive transcription factor PLT2","--","--","AP2 domain","AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1","K","Transcription","AP2-like ethylene-responsive transcription factor PLT2 [Durio zibethinus]"]
["c43750.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: seed coat development (GO:0010214);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","WRKY transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=WRKY44 PE=1 SV=2","K","Transcription","hypothetical protein B456_009G421200 [Gossypium raimondii]"]
["c55682.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","--","--","--","--","--","--","--","Ethylene-responsive transcription factor WRI1 [Gossypium arboreum]"]
["c44498.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 47 OS=Arabidopsis thaliana OX=3702 GN=WRKY47 PE=1 SV=2","K","Transcription","PREDICTED: probable WRKY transcription factor 47 [Gossypium raimondii] "]
["c76328.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to salt stress (GO:0009651);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 GN=ERF114 PE=1 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF114-like [Gossypium raimondii] "]
["c38383.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Basic leucine zipper 43 OS=Arabidopsis thaliana OX=3702 GN=BZIP43 PE=1 SV=1","K","Transcription","basic leucine zipper 43-like [Durio zibethinus]"]
["c28695.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|3.28582e-18|gra:105769289|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-12-like","--","--","--","--","--","--","hypothetical protein B456_009G147300 [Gossypium raimondii]"]
["c47300.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14514|0|tcc:TCM_042022|K14514 ethylene-insensitive protein 3 | (RefSeq) Ethylene insensitive 3 family protein","--","--","Ethylene insensitive 3","Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana OX=3702 GN=EIN3 PE=1 SV=1","K","Transcription","PREDICTED: protein ETHYLENE INSENSITIVE 3 [Gossypium arboreum]"]
["c67458.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.41447e-13|gra:105787815|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","--","--","--","--","--","--","PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Gossypium hirsutum] "]
["c40767.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana OX=3702 GN=ERF017 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF017-like [Gossypium hirsutum] "]
["c62620.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana OX=3702 GN=DREB2F PE=1 SV=1","K","Transcription","PREDICTED: dehydration-responsive element-binding protein 2F-like [Gossypium hirsutum]"]
["c243.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana OX=3702 GN=ERF054 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF054-like [Gossypium arboreum]"]
["c94157.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein polyubiquitination (GO:0000209);; Biological Process: telomere maintenance via recombination (GO:0000722);; Biological Process: double-strand break repair via homologous recombination (GO:0000724);; Cellular Component: chromosome, telomeric region (GO:0000781);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: chromatin remodeling (GO:0006338);; Biological Process: chromatin silencing at telomere (GO:0006348);; Biological Process: DNA-templated transcription, termination (GO:0006353);; Biological Process: histone monoubiquitination (GO:0010390);; Biological Process: negative regulation of transcription by transcription factor catabolism (GO:0010620);; Biological Process: ubiquitin-dependent ERAD pathway (GO:0030433);; Biological Process: chromatin silencing at silent mating-type cassette (GO:0030466);; Biological Process: chromatin assembly (GO:0031497);; Biological Process: mitotic G1 DNA damage checkpoint (GO:0031571);; Cellular Component: HULC complex (GO:0033503);; Biological Process: meiotic DNA double-strand break formation (GO:0042138);; Biological Process: error-free postreplication DNA repair (GO:0042275);; Biological Process: error-prone translesion synthesis (GO:0042276);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Biological Process: regulation of histone H3-K4 methylation (GO:0051569);; Molecular Function: ubiquitin conjugating enzyme activity (GO:0061631);; Biological Process: error-free translesion synthesis (GO:0070987);; Biological Process: cellular response to hyperoxia (GO:0071455);; Biological Process: ubiquitin-dependent protein catabolic process via the N-end rule pathway (GO:0071596);; Biological Process: histone H2B conserved C-terminal lysine ubiquitination (GO:0071894);; Biological Process: regulation of dipeptide transport (GO:0090089);; Cellular Component: Rad6-Rad18 complex (GO:0097505);; Biological Process: negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process in response to increased oxygen levels (GO:1901487);; ","K10573|8.28362e-39|cvr:CHLNCDRAFT_30002|K10573 ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin-conjugating enzyme","Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa OX=3879 GN=UBC2 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein PSACC_02393 [Paramicrosporidium saccamoebae]"]
["c44735.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","K-box region","Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL9 homolog [Gossypium raimondii] "]
["c48082.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=WRKY11 PE=2 SV=2","--","--","PREDICTED: probable WRKY transcription factor 17 [Gossypium raimondii] "]
["c48209.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: asymmetric cell division (GO:0008356);; Biological Process: gravitropism (GO:0009630);; Biological Process: radial pattern formation (GO:0009956);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: leaf development (GO:0048366);; Biological Process: maintenance of protein location in nucleus (GO:0051457);; Biological Process: bundle sheath cell fate specification (GO:0090610);; ","--","--","--","GRAS domain family","Protein SCARECROW OS=Arabidopsis thaliana OX=3702 GN=SCR PE=1 SV=1","K","Transcription","PREDICTED: protein SCARECROW-like [Gossypium raimondii] "]
["c23343.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cellular response to starvation (GO:0009267);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA20062 [Gossypium barbadense]"]
["c38890.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|1.254e-62|gra:105770656|K09264 MADS-box transcription factor, plant | (RefSeq) agamous-like MADS-box protein AGL11","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1","K","Transcription","hypothetical protein B456_009G288000 [Gossypium raimondii]"]
["c44063.graph_c3","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of defense response (GO:0031347);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain;; WRKY DNA -binding domain","Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2","K","Transcription","probable WRKY transcription factor 3 [Durio zibethinus]"]
["c19783.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 65 OS=Arabidopsis thaliana OX=3702 GN=WRKY65 PE=2 SV=1","K","Transcription","probable WRKY transcription factor 65 isoform X1 [Herrania umbratica]"]
["c37506.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|3.36518e-75|gra:105800285|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 2-like","--","--","--","Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana OX=3702 GN=ERF1A PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1A-like, partial [Gossypium hirsutum]"]
["c89816.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14516|6.23299e-12|gra:105793088|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","--","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","--","--","hypothetical protein B456_004G057100 [Gossypium raimondii]"]
["c31060.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 43 OS=Arabidopsis thaliana OX=3702 GN=WRKY43 PE=1 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 43 [Gossypium hirsutum] "]
["c2616.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana OX=3702 GN=ERF022 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA28680 [Gossypium barbadense]"]
["c3995.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|9.07918e-56|tcc:TCM_040576|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2 domain-containing transcription factor","--","--","--","AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 [Gossypium arboreum]"]
["c45821.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.40399e-10|gra:105800723|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-3-like","--","--","--","--","--","--","hypothetical protein GOBAR_DD18939 [Gossypium barbadense]"]
["c43556.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Basic leucine zipper 10 OS=Arabidopsis thaliana OX=3702 GN=BZIP10 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_DD05447 [Gossypium barbadense]"]
["c42370.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|6.35388e-138|tcc:TCM_034652|K09285 AP2-like factor, ANT lineage | (RefSeq) Integrase-type DNA-binding superfamily protein","--","--","AP2 domain","AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana OX=3702 GN=ANT PE=1 SV=2","K","Transcription","AP2-like ethylene-responsive transcription factor ANT [Herrania umbratica]"]
["c85940.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.15994e-32|fve:101309384|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-6-like","[K]","Transcription ","--","Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana OX=3702 GN=ATHB-5 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1 [Fragaria vesca subsp. vesca]"]
["c54263.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[K]","Transcription ","--","Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 SV=1","K","Transcription","hypothetical protein B456_008G163200 [Gossypium raimondii]"]
["c90169.graph_c0","--","--","Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03129|2.25662e-37|bdi:100843773|K03129 transcription initiation factor TFIID subunit 4 | (RefSeq) transcription initiation factor TFIID subunit 4b-like","[K]","Transcription ","--","Transcription initiation factor TFIID subunit 4b OS=Arabidopsis thaliana OX=3702 GN=TAF4B PE=1 SV=1","K","Transcription","hypothetical protein TRIUR3_15656 [Triticum urartu]"]
["c8189.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: RNA polymerase II transcription factor binding (GO:0001085);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: transcription from RNA polymerase II promoter (GO:0006366);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell differentiation (GO:0030154);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1","K","Transcription","PREDICTED: GATA transcription factor 4 [Gossypium hirsutum]"]
["c25296.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|8.12326e-49|gra:105798232|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT7-like","[K]","Transcription ","Homeobox associated leucine zipper","Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana OX=3702 GN=ATHB-20 PE=1 SV=2","K","Transcription","Homeobox-leucine zipper ATHB-20 -like protein [Gossypium arboreum]"]
["c60026.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|3.75194e-19|gra:105797323|K14432 ABA responsive element binding factor | (RefSeq) ABSCISIC ACID-INSENSITIVE 5-like protein 5","--","--","--","ABSCISIC ACID-INSENSITIVE 5-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=ABF4 PE=1 SV=1","K","Transcription","PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Gossypium arboreum] "]
["c33436.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana OX=3702 GN=DREB1F PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA36850 [Gossypium barbadense]"]
["c51158.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","Basic-leucine zipper transcription factor family protein isoform 3, partial [Theobroma cacao]"]
["c93469.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding (GO:0003705);; Cellular Component: nucleoplasm (GO:0005654);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: organelle organization (GO:0006996);; Molecular Function: transcription factor binding (GO:0008134);; Biological Process: male sex determination (GO:0030238);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Biological Process: positive regulation of male gonad development (GO:2000020);; ","--","[K]","Transcription ","HMG (high mobility group) box;; Sox developmental protein N terminal;; HMG-box domain","FACT complex subunit SSRP1 OS=Zea mays OX=4577 GN=SSRP1 PE=1 SV=1","B","Chromatin structure and dynamics","sex-determining region Y protein, partial [Carica papaya] "]
["c29263.graph_c2","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|6.87921e-38|tcc:TCM_037098|K14491 two-component response regulator ARR-B family | (RefSeq) Type-b response regulator, putative","--","--","--","--","K","Transcription","two-component response regulator ORR24-like [Durio zibethinus] "]
["c25064.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","probable WRKY transcription factor 31 [Gossypium hirsutum] "]
["c57100.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","WRKY29 [Gossypium aridum]"]
["c47927.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.38593e-105|gra:105794177|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ATHB-13","[K]","Transcription ","Homeobox domain;; Homeobox associated leucine zipper","Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana OX=3702 GN=ATHB-13 PE=2 SV=2","K","Transcription","hypothetical protein B456_005G139600 [Gossypium raimondii]"]
["c29083.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","Synaptonemal complex protein 1 (SCP-1)","--","T","Signal transduction mechanisms","PREDICTED: putative WEB family protein At1g65010, chloroplastic isoform X2 [Gossypium raimondii] "]
["c52003.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: seed germination (GO:0009845);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","--","--","K","Transcription","Plant-specific GATA-type zinc finger transcription factor family protein isoform 2 [Theobroma cacao]"]
["c18096.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to gibberellin (GO:0009739);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Scarecrow-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCL3 PE=1 SV=1","--","--","PREDICTED: scarecrow-like protein 3 [Gossypium arboreum]"]
["c38902.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K13424|7.5836e-51|gra:105789043|K13424 WRKY transcription factor 33 | (RefSeq) probable WRKY transcription factor 25","--","--","--","Probable WRKY transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=WRKY26 PE=1 SV=2","K","Transcription","PREDICTED: probable WRKY transcription factor 26 [Gossypium arboreum] "]
["c24462.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|2.34815e-30|gra:105763676|K14431 transcription factor TGA | (RefSeq) transcription factor TGA1-like","--","--","--","Transcription factor TGA3 OS=Arabidopsis thaliana OX=3702 GN=TGA3 PE=1 SV=1","K","Transcription","Transcription factor TGA4 -like protein [Gossypium arboreum]"]
["c54112.graph_c0","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|7.80785e-20|gra:105766286|K14491 two-component response regulator ARR-B family | (RefSeq) two-component response regulator ARR12-like","--","--","--","--","T","Signal transduction mechanisms","two-component response regulator ORR24-like [Durio zibethinus]"]
["c45934.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K06620|0|gra:105785460|K06620 transcription factor E2F3 | (RefSeq) transcription factor E2FA-like","[K]","Transcription ","E2F transcription factor CC-MB domain;; E2F/DP family winged-helix DNA-binding domain","Transcription factor E2FA OS=Arabidopsis thaliana OX=3702 GN=E2FA PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD01553 [Gossypium barbadense]"]
["c22157.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1","K","Transcription","PREDICTED: bZIP transcription factor 44 [Theobroma cacao] "]
["c23330.graph_c2","--","--","Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: cellular sodium ion homeostasis (GO:0006883);; Biological Process: cellular potassium ion homeostasis (GO:0030007);; Biological Process: negative regulation of sequence-specific DNA binding transcription factor activity (GO:0043433);; Biological Process: negative regulation of response to salt stress (GO:1901001);; ","--","--","--","--","VQ motif-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=VQ9 PE=1 SV=1","S","Function unknown","VQ motif-containing protein 9 [Cajanus cajan]"]
["c41505.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: cellular response to iron ion starvation (GO:0010106);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: iron ion homeostasis (GO:0055072);; ","--","--","--","--","Transcription factor bHLH47 OS=Arabidopsis thaliana OX=3702 GN=BHLH47 PE=1 SV=1","K","Transcription","transcription factor bHLH47-like [Durio zibethinus] "]
["c4562.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14516|8.61072e-46|gra:105801608|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_AA35153 [Gossypium barbadense]"]
["c35799.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD15775 [Gossypium barbadense]"]
["c39172.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana OX=3702 GN=ERF012 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF014-like [Gossypium raimondii] "]
["c25962.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.60062e-55|gra:105800546|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-6b","[K]","Transcription ","--","Heat stress transcription factor A-6b OS=Arabidopsis thaliana OX=3702 GN=HSFA6b PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor A-6b [Gossypium raimondii] "]
["c90096.graph_c0","--","--","Molecular Function: inositol hexakisphosphate kinase activity (GO:0000828);; Molecular Function: inositol heptakisphosphate kinase activity (GO:0000829);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: inositol metabolic process (GO:0006020);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: osmosensory signaling pathway (GO:0007231);; Biological Process: sulfate transport (GO:0008272);; Biological Process: DNA mediated transformation (GO:0009294);; Biological Process: thigmotropism (GO:0009652);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Biological Process: jasmonic acid and ethylene-dependent systemic resistance (GO:0009861);; Biological Process: cellular response to sulfate starvation (GO:0009970);; Biological Process: inositol phosphate biosynthetic process (GO:0032958);; Molecular Function: diphosphoinositol-pentakisphosphate kinase activity (GO:0033857);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: protein self-association (GO:0043621);; Biological Process: negative regulation of cell differentiation (GO:0045596);; Molecular Function: mitogen-activated protein kinase binding (GO:0051019);; Biological Process: nuclear import (GO:0051170);; ","K20557|1.67602e-42|ath:AT1G43700|K20557 transcription factor VIP1 | (RefSeq) VIP1; VIRE2-interacting protein 1","--","--","--","Transcription factor VIP1 OS=Arabidopsis thaliana OX=3702 GN=VIP1 PE=1 SV=1","K","Transcription","VirE2-interacting protein VIP1 [Arabidopsis thaliana]"]
["c57131.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|1.24671e-20|cic:CICLE_v10021501mg|K09338 homeobox-leucine zipper protein | (RefSeq) hypothetical protein","--","--","HD-ZIP protein N terminus","--","K","Transcription","homeobox-leucine zipper protein HAT3 [Durio zibethinus]"]
["c38786.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: vegetative to reproductive phase transition of meristem (GO:0010228);; Biological Process: inflorescence development (GO:0010229);; Biological Process: regulation of vegetative phase change (GO:0010321);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=SPL5 PE=2 SV=1","K","Transcription","PREDICTED: squamosa promoter-binding-like protein 3 [Gossypium raimondii]"]
["c27514.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","--","--","WRKY transcription factor 82 [Gossypium hirsutum]"]
["c39161.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana OX=3702 GN=ERF053 PE=1 SV=1","K","Transcription","ethylene-responsive transcription factor ERF054-like [Durio zibethinus]"]
["c33728.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|3.28697e-34|gra:105798232|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT7-like","[K]","Transcription ","--","Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana OX=3702 GN=ATHB-20 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_AA37639 [Gossypium barbadense]"]
["c44786.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","K09419|4.30014e-123|tcc:TCM_016198|K09419 heat shock transcription factor, other eukaryote | (RefSeq) Winged-helix DNA-binding transcription factor family protein, putative isoform 1","[K]","Transcription ","HSF-type DNA-binding;; LIM domain","Heat stress transcription factor B-2b OS=Arabidopsis thaliana OX=3702 GN=HSFB2B PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor B-2b-like isoform X1 [Gossypium hirsutum]"]
["c24248.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=GATA4 PE=2 SV=1","K","Transcription","GATA transcription factor 4-like [Durio zibethinus]"]
["c43747.graph_c0","--","--","Biological Process: response to molecule of bacterial origin (GO:0002237);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of defense response (GO:0031347);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 40 OS=Arabidopsis thaliana OX=3702 GN=WRKY40 PE=1 SV=1","K","Transcription","LOW QUALITY PROTEIN: probable WRKY transcription factor 40 [Durio zibethinus]"]
["c17989.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K06620|4.67577e-59|gra:105799245|K06620 transcription factor E2F3 | (RefSeq) transcription factor E2FB-like","[K]","Transcription ","--","Transcription factor E2FB OS=Arabidopsis thaliana OX=3702 GN=E2FB PE=1 SV=1","K","Transcription","PREDICTED: transcription factor E2FB-like isoform X1 [Gossypium arboreum]"]
["c43049.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","--","Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=1 SV=1","K","Transcription","PREDICTED: trihelix transcription factor GT-3b-like [Gossypium hirsutum]"]
["c29316.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1","K","Transcription","PREDICTED: ocs element-binding factor 1-like [Gossypium raimondii] "]
["c62073.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transcription factor binding (GO:0008134);; Biological Process: protein ubiquitination (GO:0016567);; Cellular Component: SCF ubiquitin ligase complex (GO:0019005);; Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031146);; ","--","--","--","F-box domain","Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana OX=3702 GN=UFO PE=1 SV=2","S","Function unknown","PREDICTED: protein UNUSUAL FLORAL ORGANS-like [Gossypium hirsutum]"]
["c50883.graph_c0","--","--","Molecular Function: transcription factor activity, transcription factor binding (GO:0000989);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Scarecrow-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCL3 PE=1 SV=1","K","Transcription","scarecrow-like protein 3 [Durio zibethinus] "]
["c7850.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 70 OS=Arabidopsis thaliana OX=3702 GN=WRKY70 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA27443 [Gossypium barbadense]"]
["c8978.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: RNA polymerase II transcription factor binding (GO:0001085);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: transcription from RNA polymerase II promoter (GO:0006366);; Biological Process: cell differentiation (GO:0030154);; ","--","[K]","Transcription ","--","GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1","K","Transcription","GATA transcription factor 15-like isoform X1 [Durio zibethinus]"]
["c28422.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|8.3332e-15|jcu:105632304|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT4-like","[K]","Transcription ","HD-ZIP protein N terminus","Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana OX=3702 GN=HAT1 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HAT4 [Manihot esculenta] "]
["c49178.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","GATA zinc finger;; Asx homology domain","GATA transcription factor 26 OS=Arabidopsis thaliana OX=3702 GN=GATA26 PE=2 SV=1","K","Transcription","PREDICTED: GATA transcription factor 26-like isoform X3 [Gossypium raimondii] "]
["c8391.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; ","--","--","--","BES1/BZR1 plant transcription factor, N-terminal","BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana OX=3702 GN=BEH4 PE=1 SV=1","S","Function unknown","PREDICTED: BES1/BZR1 homolog protein 4 [Theobroma cacao]"]
["c40422.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 44 OS=Arabidopsis thaliana OX=3702 GN=BZIP44 PE=1 SV=1","K","Transcription","PREDICTED: bZIP transcription factor 53-like [Gossypium hirsutum]"]
["c74809.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Scarecrow-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=SCL18 PE=2 SV=1","K","Transcription","Transcription factor GRAS [Corchorus olitorius]"]
["c68178.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 GN=ERF098 PE=1 SV=1","K","Transcription","ethylene-responsive transcription factor ERF098-like [Durio zibethinus]"]
["c91812.graph_c0","[K]","Transcription ","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: 2-dehydro-3-deoxygalactonokinase activity (GO:0008671);; Molecular Function: galactonate dehydratase activity (GO:0008869);; Biological Process: cellular amino acid catabolic process (GO:0009063);; Biological Process: D-galactonate catabolic process (GO:0034194);; Biological Process: carbohydrate phosphorylation (GO:0046835);; ","--","--","--","FCD domain","--","--","--","D-galactonate dehydratase [Beauveria bassiana D1-5]"]
["c17321.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|2.27671e-32|gra:105765078|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor 5-like","--","--","--","--","--","--","PREDICTED: ethylene-responsive transcription factor 5-like [Gossypium raimondii]"]
["c7036.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[K]","Transcription ","--","Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 SV=1","K","Transcription","trihelix transcription factor GT-1-like isoform X2 [Durio zibethinus]"]
["c64800.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: cellular response to phosphate starvation (GO:0016036);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; Biological Process: cellular response to boron-containing substance deprivation (GO:0080169);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD36434 [Gossypium barbadense]"]
["c54816.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","--","Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=1 SV=1","K","Transcription","trihelix transcription factor [Gossypium hirsutum]"]
["c40830.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: leaf morphogenesis (GO:0009965);; ","--","[K]","Transcription ","--","BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana OX=3702 GN=BLH4 PE=1 SV=2","K","Transcription","PREDICTED: BEL1-like homeodomain protein 2 [Camelina sativa]"]
["c29413.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana OX=3702 GN=ERF053 PE=1 SV=1","K","Transcription","ethylene-responsive transcription factor ERF054-like [Durio zibethinus]"]
["c18589.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|2.21232e-11|pper:PRUPE_ppa011185mg|K14431 transcription factor TGA | (RefSeq) hypothetical protein","--","--","--","TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum OX=4097 GN=TGA21 PE=1 SV=1","--","--","TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cucurbita moschata]"]
["c43864.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","Plant zinc cluster domain;; WRKY DNA -binding domain","Probable WRKY transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=WRKY7 PE=1 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 7 isoform X2 [Gossypium raimondii]"]
["c41515.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: membrane (GO:0016020);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 12 OS=Arabidopsis thaliana OX=3702 GN=WRKY12 PE=2 SV=1","K","Transcription","hypothetical protein B456_004G166800 [Gossypium raimondii]"]
["c25785.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: double-strand break repair (GO:0006302);; Biological Process: DNA recombination (GO:0006310);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","K09419|5.84187e-35|gra:105802216|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat shock factor protein HSF24-like","[K]","Transcription ","HSF-type DNA-binding","Heat shock factor protein HSF24 OS=Solanum peruvianum OX=4082 GN=HSF24 PE=2 SV=1","K","Transcription","PREDICTED: heat shock factor protein HSF24-like [Gossypium raimondii] "]
["c41258.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.42322e-63|gra:105787634|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-10-like","--","--","AP2 domain","Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 GN=ERF010 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor RAP2-10-like [Durio zibethinus]"]
["c35917.graph_c0","--","--","Biological Process: defense response to oomycetes (GO:0002229);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of systemic acquired resistance (GO:0010112);; Biological Process: response to UV-B (GO:0010224);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: cellular response to molecule of bacterial origin (GO:0071219);; Biological Process: regulation of salicylic acid biosynthetic process (GO:0080142);; Biological Process: positive regulation of defense response to bacterium (GO:1900426);; ","--","--","--","Calmodulin binding protein-like","Protein SAR DEFICIENT 1 OS=Arabidopsis thaliana OX=3702 GN=SARD1 PE=1 SV=1","S","Function unknown","protein SAR DEFICIENT 1-like [Durio zibethinus]"]
["c27970.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","bZIP transcription factor","--","K","Transcription","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c8043.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","[K]","Transcription ","--","Trihelix transcription factor GT-4 OS=Arabidopsis thaliana OX=3702 GN=GT-4 PE=2 SV=1","K","Transcription","trihelix transcription factor GT-1-like isoform X2 [Durio zibethinus]"]
["c10209.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana OX=3702 GN=ERF017 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF017-like [Gossypium arboreum]"]
["c41884.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: leaf morphogenesis (GO:0009965);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K09338|4.54842e-126|gra:105777417|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT5","[K]","Transcription ","Homeobox associated leucine zipper;; Homeobox domain;; Homeobox KN domain","Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein HAT5 [Gossypium arboreum] "]
["c16891.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Probable WRKY transcription factor 53 OS=Arabidopsis thaliana OX=3702 GN=WRKY53 PE=1 SV=1","K","Transcription","WRKY DNA-binding protein 46, putative [Theobroma cacao]"]
["c43556.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","Basic leucine-zipper C terminal;; bZIP transcription factor;; Basic region leucine zipper","Light-inducible protein CPRF2 OS=Petroselinum crispum OX=4043 GN=CPRF2 PE=2 SV=2","K","Transcription","PREDICTED: light-inducible protein CPRF2 [Theobroma cacao]"]
["c29811.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: specification of floral organ identity (GO:0010093);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|1.40203e-20|gra:105786171|K09264 MADS-box transcription factor, plant | (RefSeq) floral homeotic protein PMADS 2-like","--","--","--","Floral homeotic protein FBP1 OS=Petunia hybrida OX=4102 GN=FBP1 PE=2 SV=1","K","Transcription","PREDICTED: floral homeotic protein PMADS 2-like [Gossypium hirsutum]"]
["c35835.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","--","Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=1 SV=1","K","Transcription","PREDICTED: trihelix transcription factor GT-3b-like [Glycine max] "]
["c47449.graph_c0","[K]","Transcription ","Molecular Function: plastid sigma factor activity (GO:0001053);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: chloroplast (GO:0009507);; ","K03093|0|gra:105773269|K03093 RNA polymerase sigma factor | (RefSeq) RNA polymerase sigma factor sigC-like","--","--","Sigma-70 region 2;; Sigma-70 region 3;; Sigma-70, region 4","RNA polymerase sigma factor sigC OS=Arabidopsis thaliana OX=3702 GN=SIGC PE=2 SV=1","K","Transcription","PREDICTED: RNA polymerase sigma factor sigC-like isoform X2 [Gossypium hirsutum]"]
["c48383.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: vegetative phase change (GO:0010050);; Biological Process: abaxial cell fate specification (GO:0010158);; Biological Process: floral meristem determinacy (GO:0010582);; ","K14486|0|tcc:TCM_029792|K14486 auxin response factor | (RefSeq) Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1","--","--","Auxin response factor;; B3 DNA binding domain","Auxin response factor 3 OS=Arabidopsis thaliana OX=3702 GN=ARF3 PE=1 SV=2","K","Transcription","PREDICTED: auxin response factor 3 isoform X4 [Theobroma cacao]"]
["c94845.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14514|2.14817e-23|gra:105787832|K14514 ethylene-insensitive protein 3 | (RefSeq) putative ETHYLENE INSENSITIVE 3-like 4 protein","--","--","--","--","--","--","hypothetical protein GOBAR_AA01745 [Gossypium barbadense]"]
["c80664.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|3.39091e-40|gra:105785203|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-1-like","--","--","AP2 domain","Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 GN=ERF010 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA19908 [Gossypium barbadense]"]
["c29938.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","GATA transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=GATA21 PE=1 SV=2","K","Transcription","PREDICTED: GATA transcription factor 21-like [Gossypium arboreum]"]
["c30394.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14432|8.99092e-26|pmum:103335361|K14432 ABA responsive element binding factor | (RefSeq) ABSCISIC ACID-INSENSITIVE 5-like protein 7","--","--","bZIP transcription factor;; Basic region leucine zipper;; bZIP Maf transcription factor","ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=ABF3 PE=1 SV=1","K","Transcription","ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Prunus persica] "]
["c21326.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","T","Signal transduction mechanisms","lamin-like protein isoform X3 [Durio zibethinus]"]
["c10135.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|1.36136e-21|gra:105774594|K09286 EREBP-like factor | (RefSeq) dehydration-responsive element-binding protein 3-like","--","--","--","Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1","K","Transcription","C-repeat binding factor 8 [Gossypium hirsutum]"]
["c43668.graph_c0","--","--","Molecular Function: RNA polymerase II regulatory region sequence-specific DNA binding (GO:0000977);; Molecular Function: RNA polymerase II transcription factor binding (GO:0001085);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleus (GO:0005634);; Cellular Component: transcription factor complex (GO:0005667);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: transcription from RNA polymerase II promoter (GO:0006366);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell differentiation (GO:0030154);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=GATA18 PE=2 SV=2","K","Transcription","GATA transcription factor 18-like [Durio zibethinus]"]
["c913.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: abscission (GO:0009838);; Biological Process: regulation of flower development (GO:0009909);; Biological Process: leaf senescence (GO:0010150);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: floral organ senescence (GO:0080187);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1","K","Transcription","PREDICTED: MADS-box protein AGL42-like isoform X1 [Gossypium arboreum]"]
["c86203.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF017-like [Gossypium arboreum]"]
["c7418.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","--","--","PREDICTED: ethylene-responsive transcription factor ERF084-like [Gossypium hirsutum] "]
["c50283.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|6.13867e-41|gra:105763380|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-10-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702 GN=RAP2-10 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor RAP2-10-like [Durio zibethinus]"]
["c41114.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2","K","Transcription","GATA transcription factor 15-like [Durio zibethinus]"]
["c14025.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana OX=3702 GN=PAT1 PE=2 SV=1","S","Function unknown","scarecrow-like protein 21 [Durio zibethinus]"]
["c52726.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","Scarecrow-like protein 32 OS=Arabidopsis thaliana OX=3702 GN=SCL32 PE=1 SV=1","S","Function unknown","PREDICTED: scarecrow-like protein 32 [Gossypium arboreum]"]
["c23092.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","[K]","Transcription ","Myb/SANT-like DNA-binding domain;; Myb-like DNA-binding domain","Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=1 SV=1","K","Transcription","PREDICTED: trihelix transcription factor GT-3b-like [Gossypium hirsutum]"]
["c55549.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","K","Transcription","PREDICTED: probable WRKY transcription factor 53 [Gossypium arboreum]"]
["c89896.graph_c0","--","--","Cellular Component: protein phosphatase type 2A complex (GO:0000159);; Cellular Component: fungal-type vacuole membrane (GO:0000329);; Biological Process: negative regulation of exit from mitosis (GO:0001100);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: cellular bud tip (GO:0005934);; Cellular Component: cellular bud neck (GO:0005935);; Biological Process: positive regulation of G2/M transition of mitotic cell cycle (GO:0010971);; Biological Process: negative regulation of septation initiation signaling (GO:0031030);; Biological Process: regulation of phosphoprotein phosphatase activity (GO:0034047);; Biological Process: negative regulation of GTPase activity (GO:0034260);; Cellular Component: mating projection tip (GO:0043332);; Biological Process: positive regulation of transcription by transcription factor localization (GO:0061586);; Cellular Component: mitotic spindle (GO:0072686);; Biological Process: regulation of mitotic cell cycle spindle assembly checkpoint (GO:0090266);; Biological Process: positive regulation of protein localization to nucleus (GO:1900182);; ","K04354|6.40887e-25|ppp:PHYPADRAFT_154437|K04354 serine/threonine-protein phosphatase 2A regulatory subunit B | (RefSeq) hypothetical protein","[T]","Signal transduction mechanisms ","--","Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0563300 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein PIROE2DRAFT_46567, partial [Piromyces sp. E2]"]
["c65308.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","--","--","--","PREDICTED: probable WRKY transcription factor 75 [Gossypium raimondii] "]
["c44182.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09287|3.83386e-66|gra:105764562|K09287 RAV-like factor | (RefSeq) AP2/ERF and B3 domain-containing transcription factor RAV1-like","--","--","B3 DNA binding domain","AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana OX=3702 GN=RAV2 PE=1 SV=1","K","Transcription","AP2/ERF and B3 domain-containing transcription factor RAV1-like [Durio zibethinus]"]
["c50281.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","WRKY4 transcription factor, partial [Gossypium hirsutum]"]
["c27131.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 51 OS=Arabidopsis thaliana OX=3702 GN=WRKY51 PE=1 SV=1","K","Transcription","PREDICTED: probable WRKY transcription factor 51 [Gossypium hirsutum]"]
["c2595.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 GN=ERF024 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA17203 [Gossypium barbadense]"]
["c45425.graph_c0","--","--","Biological Process: protein import into nucleus, translocation (GO:0000060);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transcription factor binding (GO:0008134);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: maintenance of inflorescence meristem identity (GO:0010077);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain);; K-box region","MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1","K","Transcription","PREDICTED: MADS-box protein SOC1-like isoform X1 [Gossypium raimondii] "]
["c6451.graph_c1","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: MAP kinase activity (GO:0004707);; Cellular Component: intracellular (GO:0005622);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Basic leucine zipper 43 OS=Arabidopsis thaliana OX=3702 GN=BZIP43 PE=1 SV=1","K","Transcription","hypothetical protein COLO4_25886 [Corchorus olitorius]"]
["c93075.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","K","Transcription","hypothetical protein IQ06DRAFT_324127 [Stagonospora sp. SRC1lsM3a]"]
["c52373.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: transcription factor TFIID complex (GO:0005669);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Biological Process: cytokinin-activated signaling pathway (GO:0009736);; Biological Process: jasmonic acid mediated signaling pathway (GO:0009867);; Biological Process: regulation of ethylene-activated signaling pathway (GO:0010104);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K03126|4.84276e-21|tcc:TCM_029120|K03126 transcription initiation factor TFIID subunit 12 | (RefSeq) Transcription initiation factor TFIID subunit A isoform 1","[K]","Transcription ","--","Transcription initiation factor TFIID subunit 12b OS=Arabidopsis thaliana OX=3702 GN=TAF12B PE=1 SV=1","K","Transcription","PREDICTED: transcription initiation factor TFIID subunit 12b [Gossypium arboreum]"]
["c21897.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|1.75831e-14|gra:105790686|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-7a-like","[K]","Transcription ","--","Heat stress transcription factor A-7a OS=Arabidopsis thaliana OX=3702 GN=HSFA7A PE=1 SV=1","K","Transcription","heat stress transcription factor A-6b-like isoform X5 [Durio zibethinus]"]
["c42173.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Molecular Function: activating transcription factor binding (GO:0033613);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K14432|2.52459e-149|tcc:TCM_041430|K14432 ABA responsive element binding factor | (RefSeq) Basic-leucine zipper transcription factor family protein, putative","--","--","bZIP transcription factor;; Basic region leucine zipper","ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=DPBF2 PE=1 SV=1","K","Transcription","PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1 [Theobroma cacao]"]
["c46.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09287|4.64515e-22|tcc:TCM_040397|K09287 RAV-like factor | (RefSeq) AP2/B3 transcription factor family protein, putative","--","--","B3 DNA binding domain","AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana OX=3702 GN=At1g50680 PE=2 SV=1","K","Transcription","AP2/ERF and B3 domain-containing transcription factor At1g50680-like [Durio zibethinus]"]
["c33382.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1","S","Function unknown","PREDICTED: ethylene-responsive transcription factor TINY-like [Gossypium raimondii] "]
["c64635.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","--","K","Transcription","hypothetical protein B456_007G093800 [Gossypium raimondii] "]
["c43478.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|2.21124e-160|gra:105788351|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2-like ethylene-responsive transcription factor At2g41710","--","--","--","AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana OX=3702 GN=At2g41710 PE=2 SV=2","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 [Gossypium arboreum]"]
["c48765.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.29624e-112|gra:105781811|K09286 EREBP-like factor | (RefSeq) ethylene-responsive transcription factor RAP2-11-like","--","--","AP2 domain","Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Gossypium hirsutum]"]
["c32795.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14516|3.03454e-69|gra:105784427|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","AP2 domain","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","PREDICTED: ethylene-responsive transcription factor 1B-like [Gossypium raimondii] "]
["c48842.graph_c0","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|0|gra:105774016|K14491 two-component response regulator ARR-B family | (RefSeq) two-component response regulator ARR12-like","[K]","Transcription ","--","Two-component response regulator ARR12 OS=Arabidopsis thaliana OX=3702 GN=ARR12 PE=2 SV=2","K","Transcription","PREDICTED: two-component response regulator ARR12-like [Gossypium arboreum] "]
["c40825.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Protein FD OS=Arabidopsis thaliana OX=3702 GN=FD PE=1 SV=1","K","Transcription","PREDICTED: bZIP transcription factor 27-like [Nelumbo nucifera]"]
["c67256.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","--","WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1","K","Transcription","probable WRKY transcription factor 31 [Durio zibethinus]"]
["c89911.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana OX=3702 GN=DREB1E PE=2 SV=1","K","Transcription","Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]"]
["c44036.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|1.43013e-171|gra:105799536|K14431 transcription factor TGA | (RefSeq) transcription factor TGA2","--","--","Seed dormancy control;; bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor TGA10 OS=Nicotiana tabacum OX=4097 GN=TGA10 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TGA2 isoform X2 [Gossypium arboreum]"]
["c39878.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor WIN1-like [Gossypium arboreum]"]
["c25869.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","GRAS domain family","DELLA protein RGL1 OS=Arabidopsis thaliana OX=3702 GN=RGL1 PE=1 SV=1","S","Function unknown","PREDICTED: DELLA protein RGL1-like [Gossypium hirsutum]"]
["c72605.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana OX=3702 GN=DREB1A PE=1 SV=2","K","Transcription","hypothetical protein CCACVL1_09878 [Corchorus capsularis]"]
["c49157.graph_c0","[K]","Transcription ","Molecular Function: plastid sigma factor activity (GO:0001053);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: chloroplast (GO:0009507);; Biological Process: cellular response to redox state (GO:0071461);; Biological Process: photosystem stoichiometry adjustment (GO:0080005);; ","K03086|3.20425e-120|tcc:TCM_025640|K03086 RNA polymerase primary sigma factor | (RefSeq) Sigma factor A isoform 1","--","--","Sigma-70 region 2;; Sigma-70 region 3","RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1","K","Transcription","PREDICTED: RNA polymerase sigma factor sigA-like isoform X2 [Gossypium arboreum]"]
["c50676.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana OX=3702 GN=ERF106 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor ERF107-like [Durio zibethinus]"]
["c73649.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14516|3.09437e-23|gra:105801607|K14516 ethylene-responsive transcription factor 1 | (RefSeq) ethylene-responsive transcription factor 1B-like","--","--","--","Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana OX=3702 GN=ERF1B PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_AA24219 [Gossypium barbadense]"]
["c23957.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|6.62708e-63|tcc:TCM_015898|K09286 EREBP-like factor | (RefSeq) AP2/ERF domain-containing transcription factor, putative","--","--","--","Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana OX=3702 GN=ERF1A PE=1 SV=2","K","Transcription","AP2/ERF domain-containing transcription factor, putative [Theobroma cacao]"]
["c41985.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_DD29840 [Gossypium barbadense] "]
["c41983.graph_c2","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","K09285|4.61473e-135|gra:105765869|K09285 AP2-like factor, ANT lineage | (RefSeq) AP2-like ethylene-responsive transcription factor At1g16060","--","--","AP2 domain","AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana OX=3702 GN=At1g16060 PE=2 SV=1","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Gossypium hirsutum]"]
["c44375.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: RNA binding (GO:0003723);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","[K]","Transcription ","CCT motif;; GATA zinc finger;; tify domain;; Divergent CCT motif","GATA transcription factor 28 OS=Arabidopsis thaliana OX=3702 GN=GATA28 PE=1 SV=1","K","Transcription","GATA transcription factor 28-like [Durio zibethinus]"]
["c89628.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: cell cycle (GO:0007049);; ","K04683|6.05737e-19|atr:18438653|K04683 transcription factor Dp-1 | (RefSeq) transcription factor-like protein DPB","[K]","Transcription ","E2F/DP family winged-helix DNA-binding domain;; Transcription factor DP","Transcription factor-like protein DPB OS=Arabidopsis thaliana OX=3702 GN=DPB PE=1 SV=1","K","Transcription","hypothetical protein, variant 3 [Phytophthora parasitica] "]
["c93217.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","K","Transcription","Cutinase transcription factor 1 alpha [Hirsutella minnesotensis 3608]"]
["c43404.graph_c2","--","--","Biological Process: response to hypoxia (GO:0001666);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: heat acclimation (GO:0010286);; Biological Process: cellular response to unfolded protein (GO:0034620);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K09419|2.09264e-31|gra:105782155|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat shock factor protein HSF30","[K]","Transcription ","HSF-type DNA-binding","Heat stress transcription factor A-2 OS=Arabidopsis thaliana OX=3702 GN=HSFA2 PE=1 SV=1","K","Transcription","PREDICTED: heat shock factor protein HSF30 isoform X2 [Gossypium raimondii]"]
["c26574.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana OX=3702 GN=ERF024 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF024-like [Gossypium raimondii]"]
["c47812.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: translational initiation (GO:0006413);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: regulation of sequence-specific DNA binding transcription factor activity (GO:0051090);; ","K03131|3.79243e-141|gra:105768499|K03131 transcription initiation factor TFIID subunit 6 | (RefSeq) transcription initiation factor TFIID subunit 6-like","[K]","Transcription ","TAF6 C-terminal HEAT repeat domain;; TATA box binding protein associated factor (TAF);; Histone-like transcription factor (CBF/NF-Y) and archaeal histone","Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana OX=3702 GN=TAF6 PE=1 SV=1","K","Transcription","PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X3 [Gossypium raimondii] "]
["c90261.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","S","Function unknown","transcription factor Bmr1 [Stagonospora sp. SRC1lsM3a]"]
["c41568.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","K-box region","MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS55 PE=2 SV=2","K","Transcription","hypothetical protein GOBAR_AA32657 [Gossypium barbadense]"]
["c1434.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","--","--","PREDICTED: ethylene-responsive transcription factor CRF6-like [Gossypium arboreum]"]
["c45575.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K18835|0|gra:105783685|K18835 WRKY transcription factor 2 | (RefSeq) probable WRKY transcription factor 2","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 2 OS=Arabidopsis thaliana OX=3702 GN=WRKY2 PE=1 SV=1","K","Transcription","PREDICTED: WRKY transcription factor SUSIBA2-like [Gossypium arboreum]"]
["c79118.graph_c0","--","--","Molecular Function: RNA polymerase II transcription factor activity, sequence-specific DNA binding (GO:0000981);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to abscisic acid (GO:0009737);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","Stress-induced protein Di19, C-terminal","Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana OX=3702 GN=DI19-1 PE=1 SV=2","S","Function unknown","DI19 [Arabidopsis thaliana]"]
["c36971.graph_c1","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09338|6.39032e-41|rcu:8267677|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT22","[K]","Transcription ","Homeobox associated leucine zipper","Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana OX=3702 GN=HAT22 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HAT22-like [Durio zibethinus]"]
["c29263.graph_c0","--","--","Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|1.62224e-102|tcc:TCM_037098|K14491 two-component response regulator ARR-B family | (RefSeq) Type-b response regulator, putative","--","--","--","--","K","Transcription","two-component response regulator ORR24-like [Durio zibethinus] "]
["c36902.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","bZIP transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=BZIP11 PE=1 SV=1","K","Transcription","bZIP transcription factor 44-like [Durio zibethinus]"]
["c45213.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: asymmetric cell division (GO:0008356);; Biological Process: radial pattern formation (GO:0009956);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: leaf development (GO:0048366);; ","--","--","--","GRAS domain family","Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1","K","Transcription","protein SHORT-ROOT-like [Durio zibethinus]"]
["c27831.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: multicellular organism development (GO:0007275);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana OX=3702 GN=WRI1 PE=2 SV=1","K","Transcription","PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 [Gossypium hirsutum]"]
["c24682.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana OX=3702 GN=DREB1D PE=2 SV=1","K","Transcription","PREDICTED: dehydration-responsive element-binding protein 1D-like [Theobroma cacao]"]
["c94897.graph_c0","--","--","Biological Process: negative regulation of transcription from RNA polymerase II promoter (GO:0000122);; Molecular Function: core promoter binding (GO:0001047);; Molecular Function: RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly (GO:0001129);; Molecular Function: chromatin binding (GO:0003682);; Molecular Function: transcription coactivator activity (GO:0003713);; Molecular Function: transcription corepressor activity (GO:0003714);; Cellular Component: cytosol (GO:0005829);; Cellular Component: negative cofactor 2 complex (GO:0017054);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: RNA polymerase II transcriptional preinitiation complex assembly (GO:0051123);; Biological Process: positive regulation of transcription from RNA polymerase II promoter in response to heat stress (GO:0061408);; Biological Process: mitotic DNA replication (GO:1902969);; ","--","[K]","Transcription ","Histone-like transcription factor (CBF/NF-Y) and archaeal histone;; Core histone H2A/H2B/H3/H4","Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NFYC9 PE=1 SV=1","K","Transcription","class 2 transcription repressor nc2 subunit alpha [Rhizophagus irregularis DAOM 181602] "]
["c55204.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","K09264|4.9199e-41|gra:105762746|K09264 MADS-box transcription factor, plant | (RefSeq) MADS-box transcription factor 23-like","[K]","Transcription ","--","Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana OX=3702 GN=AGL21 PE=1 SV=1","K","Transcription","MADS-box transcription factor ANR1-like [Herrania umbratica]"]
["c79822.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana OX=3702 GN=ERF022 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor ERF022-like [Herrania umbratica]"]
["c56074.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K14431|4.64316e-37|gra:105792684|K14431 transcription factor TGA | (RefSeq) transcription factor HBP-1b(c38)-like","--","--","--","Transcription factor TGA9 OS=Arabidopsis thaliana OX=3702 GN=TGA9 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor HBP-1b(c38)-like isoform X4 [Gossypium raimondii] "]
["c58227.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: glucosinolate metabolic process (GO:0019760);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","--","--","--","--","Zinc-finger homeodomain protein 9 OS=Arabidopsis thaliana OX=3702 GN=ZHD9 PE=1 SV=1","S","Function unknown","zinc-finger homeodomain protein 9-like [Durio zibethinus]"]
["c90103.graph_c0","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: DNA-templated transcription, initiation (GO:0006352);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sigma factor activity (GO:0016987);; ","--","--","--","Sigma-70, region 4","RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1","K","Transcription","PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Fragaria vesca subsp. vesca]"]
["c19903.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: CCAAT-binding factor complex (GO:0016602);; ","K08064|1.48878e-10|tcc:TCM_037576|K08064 nuclear transcription factor Y, alpha | (RefSeq) Nuclear transcription factor Y subunit A-3, putative isoform 1","[K]","Transcription ","--","Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana OX=3702 GN=NFYA2 PE=2 SV=1","K","Transcription","nuclear transcription factor Y subunit A-7-like isoform X2 [Herrania umbratica]"]
["c91988.graph_c0","--","--","Molecular Function: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding (GO:0000982);; Cellular Component: nucleus (GO:0005634);; ","--","--","--","--","--","S","Function unknown","hypothetical protein IQ06DRAFT_219875 [Stagonospora sp. SRC1lsM3a]"]
["c44182.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09287|0|gra:105764562|K09287 RAV-like factor | (RefSeq) AP2/ERF and B3 domain-containing transcription factor RAV1-like","--","--","B3 DNA binding domain;; AP2 domain","AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana OX=3702 GN=TEM1 PE=1 SV=1","K","Transcription","AP2/ERF and B3 domain-containing transcription factor RAV1-like [Durio zibethinus]"]
["c47450.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K09419|0|gra:105796482|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-5-like","[K]","Transcription ","--","Heat stress transcription factor A-5 OS=Arabidopsis thaliana OX=3702 GN=HSFA5 PE=2 SV=1","K","Transcription","PREDICTED: heat stress transcription factor A-5-like isoform X2 [Gossypium raimondii]"]
["c24173.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","K18835|2.50898e-29|gra:105783685|K18835 WRKY transcription factor 2 | (RefSeq) probable WRKY transcription factor 2","--","--","--","--","--","--","hypothetical protein B456_013G179400 [Gossypium raimondii]"]
["c31921.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K09286|4.98941e-81|tcc:TCM_008270|K09286 EREBP-like factor | (RefSeq) AP2/ERF domain-containing transcription factor, putative","--","--","AP2 domain","Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 GN=ERF087 PE=2 SV=1","K","Transcription","ethylene-responsive transcription factor LEP-like [Durio zibethinus]"]
["c30580.graph_c0","--","--","Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: sequence-specific DNA binding (GO:0043565);; ","--","--","--","bZIP transcription factor;; Basic region leucine zipper","Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 SV=2","K","Transcription","PREDICTED: uncharacterized protein LOC107910718 [Gossypium hirsutum] "]
["c47050.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: beta-amylase activity (GO:0016161);; Biological Process: regulation of shoot system development (GO:0048831);; ","K01177|0|gra:105791606|K01177 beta-amylase [EC:3.2.1.2] | (RefSeq) beta-amylase 7","--","--","Glycosyl hydrolase family 14;; BES1/BZR1 plant transcription factor, N-terminal;; Glycosyl hydrolase family 14","Beta-amylase 7 OS=Arabidopsis thaliana OX=3702 GN=BAM7 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: beta-amylase 7-like isoform X2 [Gossypium hirsutum]"]
["c26121.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription factor activity, sequence-specific DNA binding (GO:0003700);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana OX=3702 GN=ERF038 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF039-like [Gossypium raimondii] "]
["#GeneID","COG_class","COG_class_annotation","GO_annotation","KEGG_annotation","KOG_class","KOG_class_annotation","Pfam_annotation","Swissprot_annotation","eggNOG_class","eggNOG_class_annotation","nr_annotation"]
["c40439.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","K11982|1.04542e-116|gra:105804507|K11982 E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RING1-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; zinc-ribbon;; RING-like zinc finger;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger)","E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium hirsutum]"]
["c42287.graph_c0","--","--","Molecular Function: inorganic anion exchanger activity (GO:0005452);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: inorganic anion transport (GO:0015698);; Biological Process: regulation of intracellular pH (GO:0051453);; Biological Process: anion transmembrane transport (GO:0098656);; ","--","[P]","Inorganic ion transport and metabolism ","--","Probable boron transporter 3 OS=Arabidopsis thaliana OX=3702 GN=BOR3 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","boron transporter 1-like isoform X1 [Durio zibethinus]"]
["c51525.graph_c0","--","--","--","K09872|1.2331e-14|gra:105784313|K09872 aquaporin PIP | (RefSeq) probable aquaporin PIP-type 7a","[G]","Carbohydrate transport and metabolism ","--","Probable aquaporin PIP1-5 OS=Arabidopsis thaliana OX=3702 GN=PIP1-5 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: probable aquaporin PIP-type 7a [Gossypium raimondii] "]
["c69132.graph_c0","--","--","--","K00901|2.95786e-06|pxb:103931359|K00901 diacylglycerol kinase (ATP) [EC:2.7.1.107] | (RefSeq) diacylglycerol kinase 1-like","--","--","--","--","--","--","--"]
["c1789.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1","S","Function unknown","zinc finger protein 6-like [Durio zibethinus]"]
["c83792.graph_c0","--","--","--","--","[E]","Amino acid transport and metabolism ","--","--","I","Lipid transport and metabolism","hypothetical protein BATDEDRAFT_87544 [Batrachochytrium dendrobatidis JAM81] "]
["c49167.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Biological Process: response to osmotic stress (GO:0006970);; Biological Process: heat acclimation (GO:0010286);; Biological Process: regulation of gene expression (GO:0010468);; ","K13162|0|gra:105765436|K13162 poly(rC)-binding protein 2/3/4 | (RefSeq) KH domain-containing protein At4g18375","[AR]","--","KH domain;; KH domain;; KH domain","RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN=RCF3 PE=1 SV=1","S","Function unknown","PREDICTED: KH domain-containing protein At4g18375-like [Gossypium hirsutum]"]
["c46587.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: core promoter binding (GO:0001047);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: circadian rhythm (GO:0007623);; Biological Process: response to blue light (GO:0009637);; Biological Process: positive regulation of flower development (GO:0009911);; ","K12116|0|gra:105785569|K12116 flavin-binding kelch repeat F-box protein 1 | (RefSeq) adagio protein 3-like","--","--","Galactose oxidase, central domain;; Galactose oxidase, central domain;; Kelch motif;; Kelch motif;; Kelch motif;; Kelch motif","Adagio protein 3 OS=Arabidopsis thaliana OX=3702 GN=ADO3 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: adagio protein 3-like isoform X1 [Gossypium hirsutum]"]
["c33444.graph_c0","--","--","Molecular Function: translation elongation factor activity (GO:0003746);; Biological Process: translational elongation (GO:0006414);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Rubber elongation factor protein (REF)","REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana OX=3702 GN=At3g05500 PE=1 SV=1","S","Function unknown","PREDICTED: REF/SRPP-like protein At3g05500 [Gossypium hirsutum]"]
["c90492.graph_c0","--","--","--","--","--","--","Myb/SANT-like DNA-binding domain","--","--","--","PREDICTED: uncharacterized protein LOC107423759 [Ziziphus jujuba]"]
["c29855.graph_c1","--","--","--","--","--","--","Protein of unknown function (DUF1005)","--","S","Function unknown","Formin-like protein 18 [Theobroma cacao]"]
["c34727.graph_c2","[I]","Lipid transport and metabolism ","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);; Biological Process: oxidation-reduction process (GO:0055114);; ","K10256|6.56635e-29|gra:105761671|K10256 omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.6 1.14.19.22] | (RefSeq) omega-6 fatty acid desaturase, endoplasmic reticulum-like","--","--","--","Oleate hydroxylase FAH12 OS=Ricinus communis OX=3988 GN=FAH12 PE=1 SV=2","I","Lipid transport and metabolism","PREDICTED: delta(12)-fatty-acid desaturase FAD2-like isoform X1 [Gossypium arboreum]"]
["c49617.graph_c1","[I]","Lipid transport and metabolism ","Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: phospholipid metabolic process (GO:0006644);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: plasmalogen synthase activity (GO:0050200);; ","K13510|1.08977e-114|gra:105772863|K13510 lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase [EC:2.3.1.23 2.3.1.67] | (RefSeq) lysophospholipid acyltransferase LPEAT1","[I]","Lipid transport and metabolism ","Acyltransferase","Lysophospholipid acyltransferase LPEAT1 OS=Arabidopsis thaliana OX=3702 GN=LPEAT1 PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: lysophospholipid acyltransferase LPEAT1-like isoform X3 [Gossypium hirsutum]"]
["c76509.graph_c0","--","--","Molecular Function: voltage-gated potassium channel activity (GO:0005249);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: high-affinity potassium ion import (GO:0010163);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","KHA, dimerisation domain of potassium ion channel","--","--","--","PREDICTED: potassium channel KAT3-like [Gossypium arboreum]"]
["c30104.graph_c1","[M]","Cell wall/membrane/envelope biogenesis ","--","--","[R]","General function prediction only ","Galactose oxidase, central domain;; Kelch motif;; Galactose oxidase, central domain;; Kelch motif;; Domain of unknown function (DUF4110);; Kelch motif;; Kelch motif","Nitrile-specifier protein 2 OS=Arabidopsis thaliana OX=3702 GN=NSP2 PE=2 SV=1","S","Function unknown","PREDICTED: kelch domain-containing protein 4 [Gossypium raimondii] "]
["c77915.graph_c0","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: very long-chain fatty acid biosynthetic process (GO:0042761);; Molecular Function: sphingosine N-acyltransferase activity (GO:0050291);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","TLC domain","LAG1 longevity assurance homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g13580 PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","unnamed protein product [Coffea canephora]"]
["c39656.graph_c2","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: pseudouridine synthesis (GO:0001522);; Molecular Function: RNA binding (GO:0003723);; Biological Process: tRNA processing (GO:0008033);; Molecular Function: pseudouridine synthase activity (GO:0009982);; ","--","[J]","Translation, ribosomal structure and biogenesis ","tRNA pseudouridine synthase;; tRNA pseudouridine synthase","--","J","Translation, ribosomal structure and biogenesis","PREDICTED: tRNA pseudouridine synthase A-like [Gossypium hirsutum]"]
["c77875.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13076|7.31905e-71|sot:102581622|K13076 Delta8-fatty-acid desaturase [EC:1.14.19.4] | (RefSeq) delta(8)-fatty-acid desaturase-like","[I]","Lipid transport and metabolism ","Fatty acid desaturase","Delta(8)-fatty-acid desaturase OS=Borago officinalis OX=13363 GN=sld1 PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: delta(8)-fatty-acid desaturase-like [Nicotiana tabacum]"]
["c44955.graph_c0","--","--","--","--","[R]","General function prediction only ","Retrotransposon gag protein;; Reverse transcriptase (RNA-dependent DNA polymerase);; Integrase core domain;; Retroviral aspartyl protease;; gag-polyprotein putative aspartyl protease","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","putative mitochondrial protein [Apostasia shenzhenica]"]
["c39541.graph_c0","[HC]","Coenzyme transport and metabolism ;; Energy production and conversion ","Molecular Function: squalene monooxygenase activity (GO:0004506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00511|0|tcc:TCM_000850|K00511 squalene monooxygenase [EC:1.14.14.17] | (RefSeq) Squalene monooxygenase isoform 1","[I]","Lipid transport and metabolism ","Squalene epoxidase;; FAD binding domain;; NAD(P)-binding Rossmann-like domain;; FAD binding domain;; FAD binding domain","Squalene monooxygenase OS=Panax ginseng OX=4054 PE=2 SV=1","CH","--","PREDICTED: squalene epoxidase 3-like [Gossypium arboreum] "]
["c6251.graph_c0","[PQ]","Inorganic ion transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ","--","--","[R]","General function prediction only ","Pyridine nucleotide-disulphide oxidoreductase","--","S","Function unknown","hypothetical protein AGABI1DRAFT_85596 [Agaricus bisporus var. burnettii JB137-S8] "]
["c48682.graph_c0","--","--","--","--","[R]","General function prediction only ","Integrase core domain;; Retroviral aspartyl protease;; gag-polyprotein putative aspartyl protease;; Aspartyl protease;; Retrotransposon gag protein","--","L","Replication, recombination and repair","Retrotransposable element Tf2, partial [Cajanus cajan]"]
["c29947.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K13420|1.25348e-52|gra:105770776|K13420 LRR receptor-like serine/threonine-protein kinase FLS2 [EC:2.7.11.1] | (RefSeq) probable LRR receptor-like serine/threonine-protein kinase At3g47570","--","--","Protein tyrosine kinase","Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. indica OX=39946 GN=XA21 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD20172 [Gossypium barbadense]"]
["c17776.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: leaf development (GO:0048366);; ","--","--","--","--","B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0563300 PE=3 SV=2","K","Transcription","PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1 [Gossypium raimondii] "]
["c42444.graph_c1","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based process (GO:0007017);; ","K07375|1.43937e-87|mdm:103419231|K07375 tubulin beta | (RefSeq) tubulin beta chain","[Z]","Cytoskeleton ","Tubulin/FtsZ family, GTPase domain","Tubulin beta-1 chain (Fragment) OS=Avena sativa OX=4498 GN=TUBB1 PE=2 SV=1","Z","Cytoskeleton","Tubulin beta-4 chain [Zea mays]"]
["c51389.graph_c0","[IQ]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: ligase activity (GO:0016874);; ","--","[I]","Lipid transport and metabolism ","AMP-binding enzyme","Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=AAE7 PE=1 SV=1","IQ","--","acetate/butyrate--CoA ligase AAE7, peroxisomal [Durio zibethinus]"]
["c45953.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; ","K16296|5.74978e-86|mtr:MTR_2g018630|K16296 serine carboxypeptidase-like clade I [EC:3.4.16.-] | (RefSeq) 1-O-acylglucose:anthocyanin acyltransferase","[OE]","--","Serine carboxypeptidase;; Serine carboxypeptidase","Serine carboxypeptidase-like 15 OS=Arabidopsis thaliana OX=3702 GN=SCPL15 PE=2 SV=2","E","Amino acid transport and metabolism","unnamed protein product [Coffea canephora]"]
["c41502.graph_c0","--","--","Molecular Function: solute:proton antiporter activity (GO:0015299);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","[P]","Inorganic ion transport and metabolism ","--","Cation/H(+) antiporter 1 OS=Arabidopsis thaliana OX=3702 GN=CHX1 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: cation/H(+) antiporter 2-like [Gossypium hirsutum]"]
["c54901.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111282083 [Durio zibethinus]"]
["c82440.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c68627.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: F-box/kelch-repeat protein At3g23880-like [Gossypium arboreum] "]
["c45119.graph_c1","[T]","Signal transduction mechanisms ","Biological Process: negative regulation of cellular defense response (GO:0051245);; ","K14508|0|gra:105777089|K14508 regulatory protein NPR1 | (RefSeq) regulatory protein NPR3","[R]","General function prediction only ","NPR1/NIM1 like defence protein C terminal;; Ankyrin repeats (3 copies);; Domain of unknown function (DUF3420);; BTB/POZ domain;; Ankyrin repeats (many copies);; Ankyrin repeat;; Ankyrin repeats (many copies);; Ankyrin repeat","Regulatory protein NPR3 OS=Arabidopsis thaliana OX=3702 GN=NPR3 PE=1 SV=1","S","Function unknown","regulatory protein NPR3-like isoform X3 [Durio zibethinus]"]
["c83260.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC108477382 [Gossypium arboreum]"]
["c86046.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: translational initiation (GO:0006413);; ","K03242|9.84977e-38|fve:101312921|K03242 translation initiation factor 2 subunit 3 | (RefSeq) eukaryotic translation initiation factor 2 subunit gamma-like","[J]","Translation, ribosomal structure and biogenesis ","--","--","J","Translation, ribosomal structure and biogenesis","eukaryotic translation initiation factor 2 subunit 3-like [Olea europaea var. sylvestris]"]
["c26032.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111312251 isoform X1 [Durio zibethinus]"]
["c59638.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: cellular amino acid metabolic process (GO:0006520);; Molecular Function: carboxy-lyase activity (GO:0016831);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K01592|0|gra:105774012|K01592 tyrosine decarboxylase [EC:4.1.1.25] | (RefSeq) aromatic-L-amino-acid decarboxylase-like","[E]","Amino acid transport and metabolism ","Pyridoxal-dependent decarboxylase conserved domain","Aromatic-L-amino-acid decarboxylase OS=Catharanthus roseus OX=4058 GN=TDC PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: aromatic-L-amino-acid decarboxylase-like [Gossypium raimondii] "]
["c92900.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[TR]","--","Calcineurin-like phosphoesterase","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107795851 [Nicotiana tabacum]"]
["c33799.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","Myb-like DNA-binding domain","Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2","S","Function unknown","Myb-like HTH transcriptional regulator family protein, putative [Theobroma cacao]"]
["c22983.graph_c0","[Z]","Cytoskeleton ","--","--","[Z]","Cytoskeleton ","Actin","Actin-103 (Fragment) OS=Nicotiana tabacum OX=4097 PE=3 SV=1","Z","Cytoskeleton","actin, partial [Populus tremula]"]
["c39360.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF4228)","--","S","Function unknown","uncharacterized protein LOC110414267 [Herrania umbratica]"]
["c1504.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity (GO:0016740);; ","K20888|0|gra:105800409|K20888 xyloglucan galactosyltransferase MUR3 [EC:2.4.1.-] | (RefSeq) xyloglucan galactosyltransferase KATAMARI1 homolog","[GMW]","--","Exostosin family","Probable xyloglucan galactosyltransferase GT12 OS=Arabidopsis thaliana OX=3702 GN=GT12 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA35662 [Gossypium barbadense]"]
["c39646.graph_c4","--","--","--","K01047|7.40169e-37|tcc:TCM_039586|K01047 secretory phospholipase A2 [EC:3.1.1.4] | (RefSeq) Phospholipase A21","--","--","Phospholipase A2","Phospholipase A2-alpha OS=Arabidopsis thaliana OX=3702 GN=PLA2-ALPHA PE=1 SV=1","I","Lipid transport and metabolism","phospholipase A2-alpha [Durio zibethinus]"]
["c81840.graph_c0","--","--","--","--","[S]","Function unknown ","--","--","S","Function unknown","--"]
["c88517.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","RUN domain","--","S","Function unknown","--"]
["c75038.graph_c0","--","--","--","--","--","--","Small cytokines (intecrine/chemokine), interleukin-8 like","--","--","--","--"]
["c10610.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105799786 [Gossypium raimondii] "]
["c94365.graph_c0","--","--","--","--","--","--","Agglutinin domain","--","S","Function unknown","hypothetical protein GOBAR_DD36400 [Gossypium barbadense]"]
["c49538.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: microtubule-associated protein futsch-like [Gossypium arboreum] "]
["c11039.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: multicellular organism development (GO:0007275);; Biological Process: regulation of cellular process (GO:0050794);; ","--","--","--","--","Protein SOMBRERO OS=Arabidopsis thaliana OX=3702 GN=SMB PE=1 SV=1","K","Transcription","protein SOMBRERO [Durio zibethinus]"]
["c48488.graph_c0","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","--","--","Putative S-adenosyl-L-methionine-dependent methyltransferase;; Methyltransferase domain;; Methyltransferase domain","Probable methyltransferase PMT8 OS=Arabidopsis thaliana OX=3702 GN=At1g04430 PE=2 SV=1","S","Function unknown","PREDICTED: probable methyltransferase PMT3 [Gossypium hirsutum] "]
["c28624.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; ","K04733|2.97778e-12|gra:105779132|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) L-type lectin-domain containing receptor kinase IX.1-like","--","--","--","Putative L-type lectin-domain containing receptor kinase II.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK22 PE=3 SV=3","--","--","PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Gossypium hirsutum]"]
["c76852.graph_c0","--","--","--","--","--","--","Immunoglobulin C1-set domain;; Immunoglobulin domain;; CD80-like C2-set immunoglobulin domain","--","--","--","--"]
["c36365.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: glycosaminoglycan biosynthetic process (GO:0006024);; Biological Process: heparan sulfate proteoglycan biosynthetic process (GO:0015012);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity (GO:0016740);; ","--","[GMW]","--","Glycosyl transferase family 64 domain;; Glycosyl hydrolases family 43","Glycosyltransferase family protein 64 protein C5 OS=Arabidopsis thaliana OX=3702 GN=At5g04500 PE=2 SV=1","S","Function unknown","PREDICTED: glycosyltransferase family protein 64 protein C5-like [Gossypium hirsutum]"]
["c58204.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD16250 [Gossypium barbadense]"]
["c64900.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2","S","Function unknown","pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Herrania umbratica]"]
["c31188.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","--","--","--","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA24373 [Gossypium barbadense]"]
["c50973.graph_c0","[C]","Energy production and conversion ","Molecular Function: glutathione-disulfide reductase activity (GO:0004362);; Cellular Component: peroxisome (GO:0005777);; Biological Process: glutathione metabolic process (GO:0006749);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00383|6.88157e-24|gra:105794071|K00383 glutathione reductase (NADPH) [EC:1.8.1.7] | (RefSeq) glutathione reductase, chloroplastic","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain","Glutathione reductase, cytosolic OS=Arabidopsis thaliana OX=3702 GN=At3g24170 PE=1 SV=1","C","Energy production and conversion","hypothetical protein COLO4_20266 [Corchorus olitorius]"]
["c86081.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c35274.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: chitinase activity (GO:0004568);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: root epidermal cell differentiation (GO:0010053);; Biological Process: response to nitrate (GO:0010167);; Biological Process: regulation of salicylic acid metabolic process (GO:0010337);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; Biological Process: cellulose biosynthetic process (GO:0030244);; Molecular Function: polysaccharide binding (GO:0030247);; Cellular Component: apoplast (GO:0048046);; ","--","[R]","General function prediction only ","Chitinase class I","Chitinase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=CTL1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: chitinase-like protein 1 [Fragaria vesca subsp. vesca]"]
["c37178.graph_c0","--","--","--","--","--","--","WPP domain","MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1","S","Function unknown","PREDICTED: MFP1 attachment factor 1-like [Gossypium hirsutum] "]
["c80093.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: large ribosomal subunit (GO:0015934);; ","K02865|1.80416e-33|cic:CICLE_v10030134mg|K02865 large subunit ribosomal protein L10Ae | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L1p/L10e family","60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c48181.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: intracellular signal transduction (GO:0035556);; ","K14498|9.14055e-177|gra:105782605|K14498 serine/threonine-protein kinase SRK2 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase SRK2A-like","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Serine/threonine-protein kinase SRK2A OS=Arabidopsis thaliana OX=3702 GN=SRK2A PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase SRK2A-like [Gossypium arboreum]"]
["c81501.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: chaperonin-containing T-complex (GO:0005832);; Biological Process: protein folding (GO:0006457);; Molecular Function: unfolded protein binding (GO:0051082);; ","K09497|4.26148e-33|mtr:MTR_3g086330|K09497 T-complex protein 1 subunit epsilon | (RefSeq) TCP-1/cpn60 chaperonin family protein","[O]","Posttranslational modification, protein turnover, chaperones ","TCP-1/cpn60 chaperonin family","T-complex protein 1 subunit epsilon OS=Avena sativa OX=4498 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","t-complex protein 1 subunit epsilon [Quercus suber]"]
["c25150.graph_c0","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Cellular Component: DNA-directed RNA polymerase III complex (GO:0005666);; Biological Process: transcription, DNA-templated (GO:0006351);; Molecular Function: protein dimerization activity (GO:0046983);; ","K03020|1.31226e-67|gra:105788753|K03020 DNA-directed RNA polymerases I and III subunit RPAC2 | (RefSeq) DNA-directed RNA polymerases I and III subunit RPAC2-like","[K]","Transcription ","RNA polymerase Rpb3/Rpb11 dimerisation domain;; RNA polymerase Rpb3/Rpb11 dimerisation domain","DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1","K","Transcription","hypothetical protein B456_008G072300 [Gossypium raimondii]"]
["c35291.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based process (GO:0007017);; ","--","[Z]","Cytoskeleton ","Tubulin C-terminal domain","Tubulin beta-6 chain OS=Oryza sativa subsp. japonica OX=39947 GN=TUBB6 PE=2 SV=1","Z","Cytoskeleton","unknown [Zea mays]"]
["c28733.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108476654 [Gossypium arboreum]"]
["c29544.graph_c0","--","--","--","--","--","--","Eukaryotic protein of unknown function (DUF1764)","--","S","Function unknown","hypothetical protein B456_010G102500 [Gossypium raimondii]"]
["c47528.graph_c0","[P]","Inorganic ion transport and metabolism ","Biological Process: tRNA wobble position uridine thiolation (GO:0002143);; Molecular Function: thiosulfate sulfurtransferase activity (GO:0004792);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777);; Biological Process: protein adenylylation (GO:0018117);; Biological Process: enzyme active site formation via cysteine modification to L-cysteine persulfide (GO:0018192);; Biological Process: protein urmylation (GO:0032447);; Molecular Function: URM1 activating enzyme activity (GO:0042292);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: protein adenylyltransferase activity (GO:0070733);; ","K11996|3.50247e-136|gra:105768478|K11996 adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] | (RefSeq) adenylyltransferase and sulfurtransferase MOCS3","[H]","Coenzyme transport and metabolism ","Rhodanese-like domain;; ThiF family","Adenylyltransferase and sulfurtransferase MOCS3 OS=Arabidopsis thaliana OX=3702 GN=MOCS3 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Gossypium hirsutum]"]
["c44986.graph_c0","--","--","--","--","--","--","CCT motif","Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2","S","Function unknown","PREDICTED: probable serine/threonine-protein kinase DDB_G0278665 isoform X2 [Gossypium raimondii] "]
["c43663.graph_c0","--","--","Molecular Function: thiol-dependent ubiquitin-specific protease activity (GO:0004843);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: shoot system morphogenesis (GO:0010016);; Biological Process: protein deubiquitination (GO:0016579);; Biological Process: leaf development (GO:0048366);; ","K05610|0|gra:105788293|K05610 ubiquitin carboxyl-terminal hydrolase L5 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-terminal hydrolase isozyme L5-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin carboxyl-terminal hydrolase, family 1","Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UCH2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD09955 [Gossypium barbadense]"]
["c51749.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD27373 [Gossypium barbadense]"]
["c92798.graph_c0","[C]","Energy production and conversion ","Molecular Function: lyase activity (GO:0016829);; Biological Process: dicarboxylic acid metabolic process (GO:0043648);; Cellular Component: cytoplasmic part (GO:0044444);; ","K01679|3.03579e-17|apro:F751_6852|K01679 fumarate hydratase, class II [EC:4.2.1.2] | (RefSeq) Fumarate hydratase 2, chloroplastic","[C]","Energy production and conversion ","--","Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FUM2 PE=2 SV=1","--","--","fumarate hydratase, class II isoform 1 [Dorcoceras hygrometricum]"]
["c15609.graph_c0","--","--","--","K18730|2.80119e-12|tcc:TCM_017263|K18730 PERQ amino acid-rich with GYF domain-containing protein | (RefSeq) GYF domain-containing-like protein isoform 1","--","--","--","--","--","--","uncharacterized protein LOC111293493 isoform X3 [Durio zibethinus]"]
["c64643.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast (GO:0009507);; Biological Process: mitochondrial mRNA modification (GO:0080156);; ","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E69 PE=3 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic-like [Gossypium hirsutum]"]
["c17122.graph_c0","--","--","--","--","--","--","Cotton fibre expressed protein","--","S","Function unknown","uncharacterized protein LOC111286431 [Durio zibethinus]"]
["c51890.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: membrane (GO:0016020);; Biological Process: protein catabolic process (GO:0030163);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","aspartic proteinase-like protein 2 isoform X3 [Durio zibethinus]"]
["c35318.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107886578 [Gossypium hirsutum] "]
["c90335.graph_c0","--","--","Cellular Component: extracellular region (GO:0005576);; Biological Process: pathogenesis (GO:0009405);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111277571 [Durio zibethinus]"]
["c40336.graph_c0","[K]","Transcription ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana OX=3702 GN=At4g36180 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA15481 [Gossypium barbadense]"]
["c42068.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Dormancy/auxin associated protein","Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1","S","Function unknown","dormancy-associated protein homolog 4-like [Durio zibethinus]"]
["c6184.graph_c0","--","--","--","K10875|9.31187e-11|tcc:TCM_006828|K10875 DNA repair and recombination protein RAD54 and RAD54-like protein [EC:3.6.4.-] | (RefSeq) SNF2 domain-containing protein / helicase domain-containing protein, putative isoform 1","--","--","--","--","L","Replication, recombination and repair","protein CHROMATIN REMODELING 35-like isoform X4 [Durio zibethinus]"]
["c73738.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","[GC]","--","--","Anthocyanidin 3-O-glucoside 2&apos;&apos;-O-glucosyltransferase OS=Ipomoea nil OX=35883 GN=3GGT PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA19358 [Gossypium barbadense]"]
["c81777.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","NB-ARC domain","Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1","S","Function unknown","PREDICTED: putative disease resistance protein RGA1 [Gossypium hirsutum]"]
["c16271.graph_c0","--","--","--","--","--","--","Bromodomain extra-terminal - transcription regulation","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105780443 isoform X1 [Gossypium raimondii] "]
["c50970.graph_c0","--","--","Cellular Component: gamma-tubulin ring complex (GO:0008274);; Biological Process: gamma-tubulin complex localization (GO:0033566);; ","K18633|9.6503e-30|gra:105765652|K18633 mitotic-spindle organizing protein 1 | (RefSeq) mitotic-spindle organizing protein 1B-like","--","--","Mitotic-spindle organizing gamma-tubulin ring associated","Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana OX=3702 GN=GIP1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: mitotic-spindle organizing protein 1B [Theobroma cacao] "]
["c20085.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Molecular Function: galactoside 2-alpha-L-fucosyltransferase activity (GO:0008107);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: xyloglucan biosynthetic process (GO:0009969);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: fucosylation (GO:0036065);; ","K13681|0|gra:105783833|K13681 xyloglucan fucosyltransferase [EC:2.4.1.-] | (RefSeq) galactoside 2-alpha-L-fucosyltransferase-like","--","--","Xyloglucan fucosyltransferase","Galactoside 2-alpha-L-fucosyltransferase OS=Arabidopsis thaliana OX=3702 GN=FUT1 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Gossypium raimondii] "]
["c39012.graph_c1","--","--","Molecular Function: actin binding (GO:0003779);; Biological Process: cytoskeleton organization (GO:0007010);; ","--","[Z]","Cytoskeleton ","--","Villin-4 OS=Arabidopsis thaliana OX=3702 GN=VLN4 PE=1 SV=1","S","Function unknown","PREDICTED: villin-4-like [Gossypium arboreum]"]
["c24804.graph_c0","--","--","--","--","--","--","C1 domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105801241 [Gossypium raimondii]"]
["c46161.graph_c1","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g20300 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Gossypium hirsutum]"]
["c49151.graph_c0","--","--","--","--","--","--","B-box zinc finger","B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1","S","Function unknown","PREDICTED: B-box zinc finger protein 18-like isoform X2 [Vigna angularis]"]
["c13914.graph_c0","--","--","Biological Process: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000463);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02918|1.6189e-25|cvr:CHLNCDRAFT_52203|K02918 large subunit ribosomal protein L35e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L29 protein","60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein CHLNCDRAFT_52203 [Chlorella variabilis] "]
["c61991.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","Helix-loop-helix DNA-binding domain","Protein IRON-RELATED TRANSCRIPTION FACTOR 2 OS=Oryza sativa subsp. japonica OX=39947 GN=IRO2 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC18609445 [Theobroma cacao]"]
["c47569.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; ","K09422|3.2807e-17|aip:107613574|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor MYB26-like","[K]","Transcription ","--","Transcription factor MYB26 OS=Arabidopsis thaliana OX=3702 GN=MYB26 PE=2 SV=1","K","Transcription","transcription factor MYB26-like isoform X1 [Arachis ipaensis]"]
["c41126.graph_c0","--","--","--","--","--","--","NPH3 family","BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana OX=3702 GN=At1g03010 PE=2 SV=1","S","Function unknown","BTB/POZ domain-containing protein At1g03010-like isoform X2 [Durio zibethinus]"]
["c35035.graph_c0","[E]","Amino acid transport and metabolism ","--","--","--","--","Aluminium induced protein;; Glutamine amidotransferase domain;; Glutamine amidotransferase domain","Stem-specific protein TSJT1 OS=Nicotiana tabacum OX=4097 GN=TSJT1 PE=2 SV=1","S","Function unknown","PREDICTED: stem-specific protein TSJT1-like [Gossypium raimondii] "]
["c44363.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_029470 isoform 1 [Theobroma cacao]"]
["c34303.graph_c2","--","--","--","--","--","--","--","Phytochrome A-associated F-box protein OS=Arabidopsis thaliana OX=3702 GN=EID1 PE=1 SV=2","S","Function unknown","phytochrome A-associated F-box protein [Durio zibethinus]"]
["c90759.graph_c0","--","--","Biological Process: cellular amino acid biosynthetic process (GO:0008652);; ","--","[E]","Amino acid transport and metabolism ","--","--","E","Amino acid transport and metabolism","Saccharopine dehydrogenase [NAD(+), L-lysine-forming] [Smittium culicis]"]
["c58219.graph_c0","--","--","Cellular Component: viral envelope (GO:0019031);; ","--","--","--","--","Outer envelope pore protein 37, chloroplastic OS=Pisum sativum OX=3888 GN=OEP37 PE=1 SV=1","S","Function unknown","PREDICTED: outer envelope pore protein 37, chloroplastic-like [Gossypium hirsutum]"]
["c45865.graph_c2","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA06899 [Gossypium barbadense]"]
["c41341.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02977|1.18171e-70|gra:105776200|K02977 small subunit ribosomal protein S27Ae | (RefSeq) ubiquitin-40S ribosomal protein S27a","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S27a;; Ubiquitin family;; Ubiquitin-2 like Rad60 SUMO-like","Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein POPTR_002G190000v3 [Populus trichocarpa]"]
["c50192.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[G]","Carbohydrate transport and metabolism ","--","Shaggy-related protein kinase theta OS=Arabidopsis thaliana OX=3702 GN=ASK8 PE=2 SV=3","T","Signal transduction mechanisms","PREDICTED: shaggy-related protein kinase theta-like [Pyrus x bretschneideri]"]
["c16449.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: thymidine kinase activity (GO:0004797);; Molecular Function: ATP binding (GO:0005524);; Biological Process: deoxyribonucleoside monophosphate biosynthetic process (GO:0009157);; Biological Process: phosphorylation (GO:0016310);; Biological Process: DNA biosynthetic process (GO:0071897);; ","K00857|3.39666e-98|cit:102621433|K00857 thymidine kinase [EC:2.7.1.21] | (RefSeq) thymidine kinase","[F]","Nucleotide transport and metabolism ","Thymidine kinase;; Thymidine kinase","Thymidine kinase OS=Oryza sativa subsp. japonica OX=39947 GN=TK PE=2 SV=2","F","Nucleotide transport and metabolism","PREDICTED: thymidine kinase a-like [Gossypium hirsutum]"]
["c34042.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105802666 [Gossypium raimondii]"]
["c44148.graph_c0","[DPM]","Cell cycle control, cell division, chromosome partitioning ;; Inorganic ion transport and metabolism ;; Cell wall/membrane/envelope biogenesis ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00423|7.27005e-68|gra:105785652|K00423 L-ascorbate oxidase [EC:1.10.3.3] | (RefSeq) L-ascorbate oxidase homolog","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase","L-ascorbate oxidase homolog OS=Nicotiana tabacum OX=4097 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein B456_013G2447002, partial [Gossypium raimondii]"]
["c42391.graph_c1","--","--","--","K13463|2.67695e-06|tcc:TCM_042602|K13463 coronatine-insensitive protein 1 | (RefSeq) RNI-like superfamily protein","--","--","--","--","--","--","coronatine-insensitive protein 1-like [Durio zibethinus]"]
["c53818.graph_c0","--","--","--","K00688|1.29904e-07|gra:105798130|K00688 glycogen phosphorylase [EC:2.4.1.1] | (RefSeq) alpha-glucan phosphorylase 1","[G]","Carbohydrate transport and metabolism ","--","Alpha-glucan phosphorylase 1 OS=Arabidopsis thaliana OX=3702 GN=PHS1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic-like [Gossypium hirsutum]"]
["c46275.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105794282 [Gossypium raimondii] "]
["c37834.graph_c1","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: peptide-methionine (S)-S-oxide reductase activity (GO:0008113);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to cytokinin (GO:0009735);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: protein repair (GO:0030091);; Biological Process: cellular response to oxidative stress (GO:0034599);; Biological Process: oxidation-reduction process (GO:0055114);; ","K07304|2.43332e-78|gra:105764866|K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] | (RefSeq) peptide methionine sulfoxide reductase A1","[O]","Posttranslational modification, protein turnover, chaperones ","Peptide methionine sulfoxide reductase;; Peptide methionine sulfoxide reductase","Peptide methionine sulfoxide reductase OS=Brassica napus OX=3708 GN=PMSR PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: peptide methionine sulfoxide reductase A1-like [Gossypium hirsutum]"]
["c31830.graph_c0","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|1.9227e-63|gra:105778666|K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] | (RefSeq) ABC transporter B family member 19-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter;; Predicted ATPase of the ABC class","ABC transporter B family member 15 OS=Arabidopsis thaliana OX=3702 GN=ABCB15 PE=3 SV=1","V","Defense mechanisms","hypothetical protein GOBAR_DD03288 [Gossypium barbadense]"]
["c32804.graph_c1","--","--","Molecular Function: phospholipase D activity (GO:0004630);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: membrane (GO:0016020);; Biological Process: lipid catabolic process (GO:0016042);; Biological Process: phosphatidylcholine metabolic process (GO:0046470);; Molecular Function: N-acylphosphatidylethanolamine-specific phospholipase D activity (GO:0070290);; ","K01115|1.08172e-36|gra:105787428|K01115 phospholipase D1/2 [EC:3.1.4.4] | (RefSeq) phospholipase D delta","[I]","Lipid transport and metabolism ","--","Phospholipase D delta OS=Arabidopsis thaliana OX=3702 GN=PLDDELTA PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_AA09362 [Gossypium barbadense]"]
["c44151.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD13389 [Gossypium barbadense]"]
["c42456.graph_c1","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; ","--","--","--","--","--","S","Function unknown","Phox/Bem1p [Corchorus olitorius]"]
["c25602.graph_c3","--","--","--","--","[W]","Extracellular structures ","Fibrillar collagen C-terminal domain;; Collagen triple helix repeat (20 copies)","--","S","Function unknown","--"]
["c52281.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleus (GO:0005634);; Biological Process: gene silencing (GO:0016458);; Biological Process: DNA demethylation (GO:0080111);; ","--","--","--","--","--","--","--","hypothetical protein CCACVL1_28801 [Corchorus capsularis]"]
["c3831.graph_c0","--","--","--","--","--","--","--","--","K","Transcription","--"]
["c44191.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; ","K04733|0|gra:105773971|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) putative serine/threonine-protein kinase","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain","Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: putative serine/threonine-protein kinase [Gossypium arboreum] "]
["c39409.graph_c0","[QR]","Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","Zinc-binding dehydrogenase;; N-terminal domain of oxidoreductase;; Zinc-binding dehydrogenase","2-alkenal reductase (NADP(+)-dependent) OS=Nicotiana tabacum OX=4097 GN=DBR PE=1 SV=1","S","Function unknown","PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Gossypium hirsutum]"]
["c43784.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: plant-type cell wall organization (GO:0009664);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|4.39226e-171|gra:105774113|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 12-like","--","--","Peroxidase;; Peroxidase","Peroxidase 12 OS=Arabidopsis thaliana OX=3702 GN=PER12 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: peroxidase 12-like [Gossypium hirsutum]"]
["c46000.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: mRNA binding (GO:0003729);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: DNA repair (GO:0006281);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: defense response (GO:0006952);; Cellular Component: chloroplast (GO:0009507);; ","--","--","--","Whirly transcription factor","Single-stranded DNA-binding protein WHY2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WHY2 PE=1 SV=1","K","Transcription","ssDNA-binding transcriptional regulator [Corchorus olitorius]"]
["c35347.graph_c0","[EM]","Amino acid transport and metabolism ;; Cell wall/membrane/envelope biogenesis ","--","K01714|6.41588e-12|cme:CYME_CME179C|K01714 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] | (RefSeq) dihydrodipicolinate synthase","--","--","Dihydrodipicolinate synthetase family","--","E","Amino acid transport and metabolism","aldolase [Gonapodya prolifera JEL478]"]
["c47108.graph_c0","--","--","--","--","[S]","Function unknown ","rRNA-processing protein Efg1","--","S","Function unknown","PREDICTED: rRNA-processing protein EFG1-like isoform X2 [Gossypium raimondii] "]
["c52052.graph_c0","[I]","Lipid transport and metabolism ","Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Alpha/beta hydrolase family;; alpha/beta hydrolase fold;; Serine aminopeptidase, S33","Pheophytinase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPH PE=1 SV=1","S","Function unknown","PREDICTED: pheophytinase, chloroplastic [Gossypium raimondii] "]
["c43363.graph_c0","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; ","K15445|2.14999e-109|gra:105769160|K15445 tRNA (guanine9-N1)-methyltransferase [EC:2.1.1.221] | (RefSeq) tRNA methyltransferase 10 homolog A","[S]","Function unknown ","tRNA (Guanine-1)-methyltransferase","--","S","Function unknown","PREDICTED: tRNA methyltransferase 10 homolog A-like isoform X2 [Gossypium hirsutum]"]
["c17033.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: triglyceride lipase activity (GO:0004806);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: phosphatidylcholine 1-acylhydrolase activity (GO:0008970);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: galactolipase activity (GO:0047714);; ","--","[I]","Lipid transport and metabolism ","Lipase (class 3)","Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g16820 PE=1 SV=2","S","Function unknown","PREDICTED: phospholipase A1-Ibeta2, chloroplastic-like [Gossypium raimondii] "]
["c1218.graph_c0","--","--","--","--","--","--","VQ motif","VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=2 SV=1","S","Function unknown","PREDICTED: VQ motif-containing protein 8, chloroplastic [Gossypium raimondii] "]
["c64545.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111312570 [Durio zibethinus]"]
["c37060.graph_c0","--","--","Molecular Function: translation elongation factor activity (GO:0003746);; Biological Process: translational elongation (GO:0006414);; Cellular Component: chloroplast (GO:0009507);; Biological Process: thylakoid membrane organization (GO:0010027);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: granum assembly (GO:0090391);; Biological Process: palisade mesophyll development (GO:1903866);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105773309 isoform X3 [Gossypium raimondii]"]
["c76050.graph_c0","--","--","--","--","--","--","Carboxylesterase family","--","I","Lipid transport and metabolism","--"]
["c54386.graph_c0","--","--","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","--","--","--"]
["c30523.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","K11363|6.76362e-100|gra:105783986|K11363 SAGA-associated factor 11 | (RefSeq) SAGA-associated factor 11 homolog","[S]","Function unknown ","Sgf11 (transcriptional regulation protein)","--","K","Transcription","PREDICTED: SAGA-associated factor 11 homolog [Gossypium raimondii] "]
["c72893.graph_c0","--","--","Biological Process: actin cortical patch assembly (GO:0000147);; Cellular Component: nucleus (GO:0005634);; Cellular Component: actomyosin contractile ring (GO:0005826);; Cellular Component: cytosol (GO:0005829);; Cellular Component: Arp2/3 protein complex (GO:0005885);; Biological Process: endocytosis (GO:0006897);; Cellular Component: actin cortical patch (GO:0030479);; Cellular Component: actin filament bundle (GO:0032432);; Biological Process: Arp2/3 complex-mediated actin nucleation (GO:0034314);; Cellular Component: cell tip (GO:0051286);; Biological Process: actin cortical patch localization (GO:0051666);; Biological Process: establishment or maintenance of cell polarity regulating cell shape (GO:0071963);; ","K05756|7.76916e-50|pxb:103942596|K05756 actin related protein 2/3 complex, subunit 3 | (RefSeq) actin-related protein 2/3 complex subunit 3-like","[Z]","Cytoskeleton ","ARP2/3 complex ARPC3 (21 kDa) subunit","Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ARPC3 PE=1 SV=1","S","Function unknown","ARP2/3 actin-organizing complex subunit Arc21 [Schizosaccharomyces octosporus yFS286] "]
["c47126.graph_c0","--","--","--","K06100|0|gra:105785243|K06100 symplekin | (RefSeq) uncharacterized LOC105785243","[A]","RNA processing and modification ","Domain of unknown function (DUF3453)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105785243 isoform X1 [Gossypium raimondii] "]
["c27253.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105800598 [Gossypium raimondii] "]
["c29798.graph_c2","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","K01114|4.05286e-11|mdm:103450893|K01114 phospholipase C [EC:3.1.4.3] | (RefSeq) non-specific phospholipase C6-like","--","--","--","Non-specific phospholipase C6 OS=Arabidopsis thaliana OX=3702 GN=NPC6 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","non-specific phospholipase C6-like [Cucurbita pepo subsp. pepo]"]
["c61783.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","--","Zinc-finger homeodomain protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZHD11 PE=1 SV=1","S","Function unknown","PREDICTED: zinc-finger homeodomain protein 11-like [Gossypium hirsutum]"]
["c54510.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: WPP domain-interacting protein 1-like [Gossypium arboreum]"]
["c79052.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Domain of unknown function (DUF4220)","--","S","Function unknown","hypothetical protein GOBAR_DD00961 [Gossypium barbadense]"]
["c26075.graph_c0","[R]","General function prediction only ","--","K01513|9.95814e-13|egr:104438313|K01513 ectonucleotide pyrophosphatase/phosphodiesterase family member 1/3 [EC:3.1.4.1 3.6.1.9] | (RefSeq) ectonucleotide pyrophosphatase/phosphodiesterase family member 3","[R]","General function prediction only ","Type I phosphodiesterase / nucleotide pyrophosphatase","--","S","Function unknown","putative type I phosphodiesterase nucleotide pyrophosphatase [Rosellinia necatrix]"]
["c41254.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1","S","Function unknown","protein LATE FLOWERING-like isoform X1 [Durio zibethinus]"]
["c41813.graph_c0","--","--","--","K09338|1.45962e-100|tcc:TCM_013821|K09338 homeobox-leucine zipper protein | (RefSeq) Homeobox protein, putative isoform 1","[K]","Transcription ","Homeobox domain;; Homeobox associated leucine zipper;; Homeobox KN domain","Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HAT5-like isoform X1 [Durio zibethinus]"]
["c38472.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K03542|1.95509e-100|fve:101306978|K03542 photosystem II 22kDa protein | (RefSeq) photosystem II 22 kDa protein, chloroplastic","--","--","Chlorophyll A-B binding protein","Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBS PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: photosystem II 22 kDa protein, chloroplastic [Fragaria vesca subsp. vesca]"]
["c75255.graph_c0","--","--","--","--","[J]","Translation, ribosomal structure and biogenesis ","--","--","S","Function unknown","--"]
["c86264.graph_c0","--","--","Cellular Component: mitochondrial proton-transporting ATP synthase, central stalk (GO:0005756);; Biological Process: ATP synthesis coupled proton transport (GO:0015986);; Molecular Function: proton-transporting ATP synthase activity, rotational mechanism (GO:0046933);; Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961);; ","K02134|3.54114e-06|bpg:Bathy10g03830|K02134 F-type H+-transporting ATPase subunit delta | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","ATP synthase, Delta/Epsilon chain, beta-sandwich domain","--","C","Energy production and conversion","ATP synthase delta chain (mitrochondrial), partial [Colletotrichum tofieldiae]"]
["c47970.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; ","K12818|1.39061e-167|gra:105794528|K12818 ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] | (RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1","[A]","RNA processing and modification ","DEAD/DEAH box helicase;; Helicase conserved C-terminal domain;; AAA domain;; ABC transporter;; Uncharacterized conserved protein (DUF2075);; Oligonucleotide/oligosaccharide-binding (OB)-fold;; Helicase associated domain (HA2)","Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana OX=3702 GN=At1g27900 PE=1 SV=1","L","Replication, recombination and repair","hypothetical protein CCACVL1_24151, partial [Corchorus capsularis]"]
["c40926.graph_c0","--","--","--","--","--","--","--","Uncharacterized protein At4g00950 OS=Arabidopsis thaliana OX=3702 GN=At4g00950 PE=2 SV=1","S","Function unknown","uncharacterized protein At4g00950-like [Durio zibethinus] "]
["c28003.graph_c0","--","--","--","--","--","--","--","Putative F-box protein At1g59675 OS=Arabidopsis thaliana OX=3702 GN=At1g59675 PE=4 SV=1","--","--","F-box protein CPR30-like [Durio zibethinus]"]
["c88203.graph_c0","--","--","--","--","--","--","--","--","H","Coenzyme transport and metabolism","--"]
["c44915.graph_c3","[G]","Carbohydrate transport and metabolism ","Biological Process: biosynthetic process (GO:0009058);; Molecular Function: strictosidine synthase activity (GO:0016844);; ","--","[R]","General function prediction only ","Strictosidine synthase;; SMP-30/Gluconolaconase/LRE-like region;; Arylesterase","Protein STRICTOSIDINE SYNTHASE-LIKE 10 OS=Arabidopsis thaliana OX=3702 GN=SSL10 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like isoform X1 [Gossypium hirsutum]"]
["c22583.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: ATPase activity (GO:0016887);; ","--","--","--","--","ABC transporter G family member 14 OS=Arabidopsis thaliana OX=3702 GN=ABCG14 PE=2 SV=1","V","Defense mechanisms","ABC transporter G family member 14-like [Durio zibethinus]"]
["c44572.graph_c0","[CHR]","Energy production and conversion ;; Coenzyme transport and metabolism ;; General function prediction only ","Cellular Component: cytosol (GO:0005829);; Molecular Function: glycerate dehydrogenase activity (GO:0008465);; Molecular Function: hydroxypyruvate reductase activity (GO:0016618);; Molecular Function: glyoxylate reductase (NADP) activity (GO:0030267);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K15893|5.50146e-128|gra:105785924|K15893 hydroxypyruvate reductase 1 | (RefSeq) glycerate dehydrogenase","[C]","Energy production and conversion ","D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain;; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain;; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain","Glycerate dehydrogenase OS=Cucumis sativus OX=3659 GN=HPR-A PE=2 SV=1","C","Energy production and conversion","PREDICTED: glycerate dehydrogenase [Gossypium raimondii] "]
["c42465.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: beta-amylase activity (GO:0016161);; ","K01177|8.08882e-153|gra:105765049|K01177 beta-amylase [EC:3.2.1.2] | (RefSeq) beta-amylase 3, chloroplastic-like","--","--","Glycosyl hydrolase family 14;; Glycosyl hydrolase family 14","Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3","S","Function unknown","PREDICTED: beta-amylase 3, chloroplastic isoform X2 [Gossypium hirsutum]"]
["c90191.graph_c0","[C]","Energy production and conversion ","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137);; Molecular Function: quinone binding (GO:0048038);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03935|2.73389e-39|mis:MicpuN_mit76|K03935 NADH dehydrogenase (ubiquinone) Fe-S protein 2 [EC:1.6.5.3 1.6.99.3] | (RefSeq) nad7; NADH dehydrogenase subunit 7","[C]","Energy production and conversion ","Respiratory-chain NADH dehydrogenase, 49 Kd subunit","NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis OX=2885 GN=NAD7 PE=3 SV=1","C","Energy production and conversion","hypothetical protein BATDEDRAFT_16021 [Batrachochytrium dendrobatidis JAM81] "]
["c41539.graph_c0","--","--","--","K04523|2.8932e-62|gra:105778906|K04523 ubiquilin | (RefSeq) ubiquitin domain-containing protein DSK2a-like","[OR]","--","--","Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana OX=3702 GN=DSK2B PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Ubiquitin family protein isoform 3 [Theobroma cacao]"]
["c32978.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to salt stress (GO:0009651);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: regulation of anion channel activity (GO:0010359);; Biological Process: protein autophosphorylation (GO:0046777);; ","K13412|0|tcc:TCM_016367|K13412 calcium-dependent protein kinase [EC:2.7.11.1] | (RefSeq) Calcium-dependent protein kinase 6 isoform 1","[T]","Signal transduction mechanisms ","Protein kinase domain;; EF hand;; EF-hand domain pair;; EF-hand domain;; EF-hand domain pair;; EF hand;; Cytoskeletal-regulatory complex EF hand;; Secreted protein acidic and rich in cysteine Ca binding region;; Protein tyrosine kinase","Calcium-dependent protein kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CPK3 PE=1 SV=1","T","Signal transduction mechanisms","calcium-dependent protein kinase 3-like isoform X2 [Durio zibethinus]"]
["c47375.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Carbohydrate-binding protein of the ER;; Protein tyrosine kinase;; Di-glucose binding within endoplasmic reticulum;; Protein kinase domain","Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana OX=3702 GN=At5g24010 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: probable receptor-like protein kinase At5g24010 [Gossypium arboreum]"]
["c156.graph_c0","--","--","--","--","--","--","--","--","T","Signal transduction mechanisms","PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 1-like [Gossypium hirsutum]"]
["c41410.graph_c0","[R]","General function prediction only ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plastid (GO:0009536);; Molecular Function: phospholipase activator activity (GO:0016004);; Cellular Component: integral component of membrane (GO:0016021);; ","K07937|2.24348e-78|vvi:100242677|K07937 ADP-ribosylation factor 1 | (RefSeq) ADP-ribosylation factor","[U]","Intracellular trafficking, secretion, and vesicular transport ","ADP-ribosylation factor family;; Signal recognition particle receptor beta subunit","ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF PE=2 SV=2","S","Function unknown","hypothetical protein GOBAR_AA09584 [Gossypium barbadense]"]
["c79093.graph_c0","--","--","Molecular Function: O-methyltransferase activity (GO:0008171);; Biological Process: methylation (GO:0032259);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[R]","General function prediction only ","--","Acetylserotonin O-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=ASMT PE=1 SV=1","S","Function unknown","PREDICTED: (RS)-norcoclaurine 6-O-methyltransferase-like isoform X1 [Gossypium raimondii] "]
["c89708.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: structural constituent of ribosome (GO:0003735);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02910|1.17585e-43|egr:104438334|K02910 large subunit ribosomal protein L31e | (RefSeq) 60S ribosomal protein L31","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L31e","60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 60S ribosomal protein L31 isoform X3 [Eucalyptus grandis] "]
["c45271.graph_c0","--","--","Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: actin binding (GO:0003779);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: Arp2/3 protein complex (GO:0005885);; Biological Process: Arp2/3 complex-mediated actin nucleation (GO:0034314);; Cellular Component: cell projection (GO:0042995);; ","K05755|5.08334e-52|crb:CARUB_v10006467mg|K05755 actin related protein 2/3 complex, subunit 4 | (RefSeq) hypothetical protein","[Z]","Cytoskeleton ","ARP2/3 complex 20 kDa subunit (ARPC4)","Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=ARPC4 PE=1 SV=1","S","Function unknown","Actin-related protein 2/3 complex subunit 4 [Cajanus cajan]"]
["c86485.graph_c0","--","--","Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02905|6.12375e-07|smo:SELMODRAFT_229028|K02905 large subunit ribosomal protein L29e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L29e protein family","60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein COCMIDRAFT_87475, partial [Bipolaris oryzae ATCC 44560] "]
["c70798.graph_c0","--","--","--","--","--","--","Fibrinogen alpha/beta chain family","--","S","Function unknown","--"]
["c49165.graph_c1","--","--","--","--","--","--","--","--","--","--","IAA-amino acid hydrolase ILR1-like 3 [Durio zibethinus]"]
["c19033.graph_c0","--","--","--","K17609|9.46913e-08|gra:105784057|K17609 nucleoredoxin [EC:1.8.1.8] | (RefSeq) probable nucleoredoxin 2","--","--","--","--","--","--","hypothetical protein F383_13074 [Gossypium arboreum]"]
["c26413.graph_c1","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108463821 [Gossypium arboreum]"]
["c77778.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c7218.graph_c1","--","--","--","--","--","--","Collagen triple helix repeat (20 copies)","--","--","--","--"]
["c14776.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Probable lipid transfer;; Protease inhibitor/seed storage/LTP family","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107953810 [Gossypium hirsutum] "]
["c22933.graph_c0","--","--","--","K19042|7.33074e-41|gra:105765047|K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase BOI-like","--","--","--","--","S","Function unknown","E3 ubiquitin-protein ligase BOI-like isoform X1 [Durio zibethinus]"]
["c89284.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107920579 isoform X2 [Gossypium hirsutum]"]
["c95475.graph_c0","--","--","Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","Sugar (and other) transporter","--","G","Carbohydrate transport and metabolism","MFS monosaccharide transporter [Colletotrichum orbiculare MAFF 240422]"]
["c47794.graph_c1","--","--","Cellular Component: cytosol (GO:0005829);; Molecular Function: glycopeptide alpha-N-acetylgalactosaminidase activity (GO:0033926);; ","--","--","--","--","Probable alkaline/neutral invertase B OS=Arabidopsis thaliana OX=3702 GN=INVB PE=1 SV=1","S","Function unknown","probable alkaline/neutral invertase B [Durio zibethinus] "]
["c60109.graph_c0","--","--","--","--","--","--","--","Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare OX=4513 GN=CW18 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: non-specific lipid-transfer protein A [Theobroma cacao] "]
["c24175.graph_c0","[R]","General function prediction only ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: integral component of membrane (GO:0016021);; ","K06890|6.10859e-34|egu:105046588|K06890 uncharacterized protein | (RefSeq) BI1-like protein","[T]","Signal transduction mechanisms ","Inhibitor of apoptosis-promoting Bax1","Protein LIFEGUARD 4 OS=Arabidopsis thaliana OX=3702 GN=LFG4 PE=2 SV=1","S","Function unknown","protein LIFEGUARD 2-like, partial [Olea europaea var. sylvestris]"]
["c9252.graph_c0","--","--","--","--","--","--","--","Probable membrane-associated kinase regulator 6 OS=Arabidopsis thaliana OX=3702 GN=MAKR6 PE=2 SV=1","T","Signal transduction mechanisms","probable membrane-associated kinase regulator 6 isoform X2 [Durio zibethinus] "]
["c43360.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: S-methyl-5-thioribose kinase activity (GO:0046522);; ","K00899|0|gra:105762791|K00899 5-methylthioribose kinase [EC:2.7.1.100] | (RefSeq) methylthioribose kinase-like","--","--","Phosphotransferase enzyme family","Methylthioribose kinase OS=Arabidopsis thaliana OX=3702 GN=MTK PE=1 SV=1","S","Function unknown","PREDICTED: methylthioribose kinase-like [Gossypium hirsutum] "]
["c38891.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: membrane (GO:0016020);; Molecular Function: ligase activity (GO:0016874);; ","K10666|4.52788e-120|gra:105779182|K10666 E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RMA3-like","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; RING-type zinc-finger;; zinc-RING finger domain;; Ring finger domain","E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Gossypium raimondii] "]
["c19650.graph_c1","--","--","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: formation of translation preinitiation complex (GO:0001731);; Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852);; Biological Process: regulation of translational initiation (GO:0006446);; Cellular Component: eukaryotic 43S preinitiation complex (GO:0016282);; Cellular Component: eukaryotic 48S preinitiation complex (GO:0033290);; ","K03248|5.43418e-46|gra:105774418|K03248 translation initiation factor 3 subunit G | (RefSeq) eukaryotic translation initiation factor 3 subunit G-like","[J]","Translation, ribosomal structure and biogenesis ","--","--","J","Translation, ribosomal structure and biogenesis","hypothetical protein GOBAR_DD15856 [Gossypium barbadense]"]
["c90364.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","--"]
["c35702.graph_c0","[K]","Transcription ","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Leucine Rich Repeat","Putative receptor like protein 25 OS=Arabidopsis thaliana OX=3702 GN=RLP25 PE=5 SV=3","S","Function unknown","PREDICTED: receptor-like protein 12 [Gossypium hirsutum]"]
["c16726.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA37164 [Gossypium barbadense]"]
["c86862.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","hypothetical protein SNOG_14796 [Parastagonospora nodorum SN15] "]
["c94893.graph_c0","--","--","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Biological Process: protein folding (GO:0006457);; ","K09571|8.93517e-46|fve:101304149|K09571 FK506-binding protein 4/5 [EC:5.2.1.8] | (RefSeq) peptidyl-prolyl cis-trans isomerase FKBP62","[O]","Posttranslational modification, protein turnover, chaperones ","FKBP-type peptidyl-prolyl cis-trans isomerase","70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62 [Fragaria vesca subsp. vesca]"]
["c87370.graph_c0","--","--","--","K20783|1.36767e-06|tcc:TCM_034000|K20783 arabinosyltransferase [EC:2.4.2.-] | (RefSeq) Nucleotide-diphospho-sugar transferase family protein","--","--","--","Arabinosyltransferase RRA2 OS=Arabidopsis thaliana OX=3702 GN=RRA2 PE=2 SV=1","--","--","--"]
["c52920.graph_c0","--","--","Biological Process: protein methylation (GO:0006479);; Molecular Function: methyltransferase activity (GO:0008168);; ","K11437|2.96042e-18|gra:105780542|K11437 type I protein arginine methyltransferase [EC:2.1.1.319] | (RefSeq) probable protein arginine N-methyltransferase 6","[OKT]","--","--","Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=PRMT6 PE=2 SV=1","S","Function unknown","hypothetical protein B456_012G135800 [Gossypium raimondii]"]
["c25837.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","K11982|2.42927e-163|gra:105776518|K11982 E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RING1-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; zinc-ribbon;; Zinc finger, C3HC4 type (RING finger);; RING-like zinc finger;; RING-type zinc-finger;; Zinc finger, C3HC4 type (RING finger);; Anaphase-promoting complex subunit 11 RING-H2 finger","Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform X1 [Gossypium raimondii]"]
["c73536.graph_c0","--","--","Molecular Function: purine ribonucleoside binding (GO:0032550);; Molecular Function: adenyl ribonucleotide binding (GO:0032559);; Molecular Function: anion binding (GO:0043168);; ","--","[T]","Signal transduction mechanisms ","NB-ARC domain;; AAA domain;; AAA domain (dynein-related subfamily);; ATPase family associated with various cellular activities (AAA)","Probable disease resistance protein At1g52660 OS=Arabidopsis thaliana OX=3702 GN=At1g52660 PE=3 SV=1","S","Function unknown","disease resistance protein At4g27190-like [Durio zibethinus]"]
["c46359.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1645)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108474236 [Gossypium arboreum]"]
["c48960.graph_c0","--","--","--","K20224|0|gra:105764431|K20224 importin-9 | (RefSeq) importin-9","[UY]","--","Importin-beta N-terminal domain;; Exportin 1-like protein;; TAF6 C-terminal HEAT repeat domain","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: importin-9 [Gossypium arboreum]"]
["c90309.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","CS domain","Protein BOBBER 1 OS=Arabidopsis thaliana OX=3702 GN=BOB1 PE=1 SV=1","S","Function unknown","nuclear movement family protein, partial [Chlamydomonas reinhardtii]"]
["c79143.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111289337 [Durio zibethinus]"]
["c37698.graph_c0","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor BIM1 OS=Arabidopsis thaliana OX=3702 GN=BIM1 PE=1 SV=2","K","Transcription","PREDICTED: transcription factor BIM1-like [Gossypium hirsutum]"]
["c33328.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: translational initiation (GO:0006413);; Biological Process: response to virus (GO:0009615);; Biological Process: response to abscisic acid (GO:0009737);; ","K03260|1.4748e-50|gra:105790302|K03260 translation initiation factor 4G | (RefSeq) eukaryotic translation initiation factor 4G-like","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana OX=3702 GN=EIF4G PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein B456_004G038200 [Gossypium raimondii]"]
["c30245.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; ","--","[T]","Signal transduction mechanisms ","--","Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana OX=3702 GN=PP2C6 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 38 isoform X2 [Gossypium hirsutum]"]
["c34312.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: RNA-directed DNA polymerase homolog [Gossypium hirsutum]"]
["c31464.graph_c0","--","--","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","--","Q","Secondary metabolites biosynthesis, transport and catabolism","--"]
["c30069.graph_c0","--","--","Molecular Function: actin binding (GO:0003779);; ","K17275|6.99323e-99|gra:105761171|K17275 plastin-1 | (RefSeq) fimbrin-1-like","[Z]","Cytoskeleton ","Calponin homology (CH) domain","Fimbrin-3 OS=Arabidopsis thaliana OX=3702 GN=FIM3 PE=3 SV=1","Z","Cytoskeleton","Fimbrin-1 -like protein [Gossypium arboreum]"]
["c74960.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[ODR]","--","Tetratricopeptide repeat;; TPR repeat","Protein PHOX4 OS=Arabidopsis thaliana OX=3702 GN=PHOX4 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","protein PHOX1-like [Durio zibethinus]"]
["c41507.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Myb-like DNA-binding domain","Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1","K","Transcription","PREDICTED: protein RADIALIS-like 3 [Gossypium arboreum] "]
["c50515.graph_c0","[R]","General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: xylan biosynthetic process (GO:0045492);; ","--","--","--","Polysaccharide biosynthesis","Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GXM1 PE=1 SV=1","S","Function unknown","glucuronoxylan 4-O-methyltransferase 1 [Durio zibethinus]"]
["c35465.graph_c0","--","--","Biological Process: vacuole inheritance (GO:0000011);; Cellular Component: cellular bud neck contractile ring (GO:0000142);; Cellular Component: Swr1 complex (GO:0000812);; Biological Process: actomyosin contractile ring contraction (GO:0000916);; Biological Process: chronological cell aging (GO:0001300);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: prospore membrane (GO:0005628);; Cellular Component: actin filament (GO:0005884);; Biological Process: DNA repair (GO:0006281);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: protein secretion (GO:0009306);; Biological Process: histone acetylation (GO:0016573);; Biological Process: establishment of cell polarity (GO:0030010);; Biological Process: regulation of endocytosis (GO:0030100);; Biological Process: ascospore wall assembly (GO:0030476);; Cellular Component: actin cortical patch (GO:0030479);; Cellular Component: Ino80 complex (GO:0031011);; Cellular Component: actin filament bundle (GO:0032432);; Biological Process: cellular response to oxidative stress (GO:0034599);; Cellular Component: NuA4 histone acetyltransferase complex (GO:0035267);; Biological Process: histone exchange (GO:0043486);; Cellular Component: cell tip (GO:0051286);; Biological Process: establishment or maintenance of cell polarity regulating cell shape (GO:0071963);; Biological Process: mitotic actomyosin contractile ring assembly (GO:1903475);; ","K05692|6.55544e-35|bvg:104885815|K05692 actin beta/gamma 1 | (RefSeq) actin-85C","[Z]","Cytoskeleton ","Actin","Actin OS=Cyanidioschyzon merolae (strain 10D) OX=280699 GN=CYME_CMM237C PE=3 SV=1","Z","Cytoskeleton","actin, partial [Moniliophthora perniciosa]"]
["c9248.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1","S","Function unknown","PREDICTED: protein TORNADO 2-like [Gossypium hirsutum]"]
["c57142.graph_c0","--","--","--","K15601|1.05499e-21|tcc:TCM_030286|K15601 lysine-specific demethylase 3 [EC:1.14.11.-] | (RefSeq) Transcription factor jumonji domain-containing protein, putative isoform 1","--","--","--","--","--","--","lysine-specific demethylase JMJ25-like [Durio zibethinus]"]
["c90888.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c90378.graph_c0","[L]","Replication, recombination and repair ","Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Biological Process: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000463);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: ATP-dependent RNA helicase activity (GO:0004004);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nuclear envelope (GO:0005635);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: preribosome, large subunit precursor (GO:0030687);; Biological Process: snoRNA release from pre-rRNA (GO:1990417);; ","K13179|6.65512e-21|sind:105164333|K13179 ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 51-like","[A]","RNA processing and modification ","DEAD/DEAH box helicase","Putative DEAD-box ATP-dependent RNA helicase 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100 PE=3 SV=2","L","Replication, recombination and repair","DEAD-box ATP-dependent RNA helicase 27-like, partial [Quercus suber]"]
["c40271.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: pectate lyase activity (GO:0030570);; Biological Process: pectin catabolic process (GO:0045490);; Molecular Function: metal ion binding (GO:0046872);; ","K01728|0|gra:105762284|K01728 pectate lyase [EC:4.2.2.2] | (RefSeq) pectate lyase 1-like","--","--","Pectate lyase","Putative pectate lyase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g11920 PE=3 SV=2","G","Carbohydrate transport and metabolism","probable pectate lyase 4 [Durio zibethinus]"]
["c51872.graph_c0","[S]","Function unknown ","Cellular Component: extracellular region (GO:0005576);; ","--","[S]","Function unknown ","Cysteine-rich secretory protein family","Pathogenesis-related protein PR-1 OS=Medicago truncatula OX=3880 GN=PR-1 PE=2 SV=1","S","Function unknown","PREDICTED: pathogenesis-related protein PR-1 [Gossypium arboreum] "]
["c31368.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K13412|5.47052e-65|gra:105796986|K13412 calcium-dependent protein kinase [EC:2.7.11.1] | (RefSeq) calcium-dependent protein kinase 11","[T]","Signal transduction mechanisms ","EF hand;; EF-hand domain;; EF hand;; EF-hand domain pair;; EF-hand domain pair;; Cytoskeletal-regulatory complex EF hand","Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana OX=3702 GN=CPK11 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: calcium-dependent protein kinase 11-like [Gossypium hirsutum]"]
["c45579.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD00958 [Gossypium barbadense]"]
["c30273.graph_c0","--","--","--","K03255|5.92436e-23|gra:105779594|K03255 protein TIF31 | (RefSeq) clustered mitochondria protein homolog","--","--","--","--","--","--","hypothetical protein B456_012G098300 [Gossypium raimondii]"]
["c34479.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|0|gra:105787283|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) lignin-forming anionic peroxidase-like","--","--","Peroxidase","Peroxidase 4 OS=Arabidopsis thaliana OX=3702 GN=PER4 PE=3 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: lignin-forming anionic peroxidase-like [Gossypium raimondii] "]
["c82190.graph_c0","--","--","Molecular Function: signal transducer activity (GO:0004871);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: signal transduction (GO:0007165);; Biological Process: phototropism (GO:0009638);; ","--","--","--","--","Root phototropism protein 2 OS=Arabidopsis thaliana OX=3702 GN=RPT2 PE=1 SV=2","S","Function unknown","PREDICTED: root phototropism protein 2 [Fragaria vesca subsp. vesca]"]
["c76270.graph_c0","--","--","Biological Process: translational initiation (GO:0006413);; Cellular Component: macromolecular complex (GO:0032991);; Cellular Component: cytoplasmic part (GO:0044444);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K03248|6.47113e-09|bna:106418982|K03248 translation initiation factor 3 subunit G | (RefSeq) eukaryotic translation initiation factor 3 subunit G-like","[J]","Translation, ribosomal structure and biogenesis ","Eukaryotic translation initiation factor 3 subunit G","--","J","Translation, ribosomal structure and biogenesis","translation initiation factor 3, RNA-binding subunit [Sistotremastrum niveocremeum HHB9708] "]
["c85104.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: ribosome (GO:0005840);; Cellular Component: eukaryotic translation initiation factor 2 complex (GO:0005850);; Cellular Component: eukaryotic translation initiation factor 2B complex (GO:0005851);; Biological Process: translational initiation (GO:0006413);; Cellular Component: eukaryotic 48S preinitiation complex (GO:0033290);; Molecular Function: ribosome binding (GO:0043022);; Cellular Component: multi-eIF complex (GO:0043614);; ","K03237|1.58963e-17|fve:101313931|K03237 translation initiation factor 2 subunit 1 | (RefSeq) eukaryotic translation initiation factor 2 subunit alpha-like","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic translation initiation factor 2 subunit alpha homolog OS=Arabidopsis thaliana OX=3702 GN=At2g40290 PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein CISIN_1g044309mg, partial [Citrus sinensis]"]
["c48536.graph_c0","--","--","--","--","--","--","Retrotransposon gag protein","--","L","Replication, recombination and repair","uncharacterized protein LOC110628243 [Manihot esculenta]"]
["c50734.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","--","--","Uncharacterized protein TCM_043653 [Theobroma cacao]"]
["c38736.graph_c0","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain;; Carbohydrate-binding protein of the ER;; Di-glucose binding within endoplasmic reticulum","Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: receptor-like protein kinase FERONIA isoform X2 [Gossypium hirsutum]"]
["c50859.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E34 PE=2 SV=2","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Gossypium raimondii] "]
["c33064.graph_c0","--","--","--","K10590|2.41249e-07|gra:105762934|K10590 E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] | (RefSeq) E3 ubiquitin-protein ligase UPL3-like","--","--","--","--","--","--","hypothetical protein GOBAR_DD15161 [Gossypium barbadense]"]
["c19939.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: translational initiation (GO:0006413);; Biological Process: response to virus (GO:0009615);; Biological Process: response to abscisic acid (GO:0009737);; ","K03260|3.03166e-11|tcc:TCM_005786|K03260 translation initiation factor 4G | (RefSeq) Eukaryotic translation initiation factor 4G, putative isoform 1","--","--","--","Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0555200 PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein B456_004G038200 [Gossypium raimondii]"]
["c17982.graph_c0","--","--","Molecular Function: catalytic activity (GO:0003824);; ","K01187|1.8085e-16|zma:103629642|K01187 alpha-glucosidase [EC:3.2.1.20] | (RefSeq) GRMZM2G428518; probable alpha-glucosidase Os06g0675700","[G]","Carbohydrate transport and metabolism ","N-terminal barrel of NtMGAM and CtMGAM, maltase-glucoamylase;; Galactose mutarotase-like","Alpha-glucosidase OS=Hordeum vulgare OX=4513 PE=2 SV=1","G","Carbohydrate transport and metabolism","family 31 glycoside hydrolase [Plasmopara halstedii]"]
["c60630.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1","S","Function unknown","pentatricopeptide repeat-containing protein At1g74630 [Durio zibethinus]"]
["c40863.graph_c0","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: NADH dehydrogenase complex (plastoquinone) assembly (GO:0010258);; Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (GO:0016655);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","NADH-quinone oxidoreductase cyanobacterial subunit N","NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhN PE=2 SV=1","C","Energy production and conversion","PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Gossypium raimondii] "]
["c71488.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA39222 [Gossypium barbadense]"]
["c9734.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111276846 [Durio zibethinus]"]
["c31247.graph_c0","--","--","--","--","--","--","Immunoglobulin V-set domain;; Immunoglobulin domain","--","S","Function unknown","--"]
["c44534.graph_c0","--","--","--","--","[R]","General function prediction only ","C2H2-type zinc finger;; C2H2-type zinc finger;; Zinc-finger double-stranded RNA-binding","Zinc finger protein ZAT4 OS=Arabidopsis thaliana OX=3702 GN=ZAT4 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC108451335 [Gossypium arboreum]"]
["c45012.graph_c1","--","--","--","--","--","--","--","--","--","--","hypothetical protein OsI_05624 [Oryza sativa Indica Group]"]
["c33190.graph_c2","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; ","K08516|2.27131e-22|cam:101500385|K08516 synaptobrevin homolog YKT6 | (RefSeq) VAMP-like protein YKT61","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","VAMP-like protein YKT61 OS=Arabidopsis thaliana OX=3702 GN=YKT61 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: VAMP-like protein YKT61 [Cicer arietinum]"]
["c34690.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111280141 [Durio zibethinus]"]
["c30337.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","[R]","General function prediction only ","Kelch motif;; Kelch motif;; Kelch motif;; Galactose oxidase, central domain;; F-box domain;; Kelch motif;; Galactose oxidase, central domain;; Protein of unknown function (DUF1668)","F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana OX=3702 GN=SKIP6 PE=1 SV=1","S","Function unknown","PREDICTED: F-box/kelch-repeat protein SKIP6-like [Gossypium raimondii] "]
["c49149.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: homogalacturonan biosynthetic process (GO:0010289);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; Biological Process: root development (GO:0048364);; Biological Process: shoot system development (GO:0048367);; ","--","--","--","Putative S-adenosyl-L-methionine-dependent methyltransferase","Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana OX=3702 GN=QUA2 PE=1 SV=2","S","Function unknown","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1 [Theobroma cacao]"]
["c35888.graph_c0","--","--","--","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 70 OS=Arabidopsis thaliana OX=3702 GN=WRKY70 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD11358 [Gossypium barbadense]"]
["c8252.graph_c0","[BQ]","Chromatin structure and dynamics ;; Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[B]","Chromatin structure and dynamics ","Histone deacetylase domain","Histone deacetylase 8 OS=Arabidopsis thaliana OX=3702 GN=HDA8 PE=2 SV=1","BQ","--","histone deacetylase 8 isoform X1 [Herrania umbratica] "]
["c33021.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18599105 [Theobroma cacao] "]
["c31968.graph_c0","--","--","--","K13945|4.60859e-73|gra:105803183|K13945 LOB domain-containing protein 29 | (RefSeq) LOB domain-containing protein 29","--","--","Lateral organ boundaries (LOB) domain","LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1","S","Function unknown","LOB domain-containing protein 29-like [Durio zibethinus]"]
["c29514.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: histone modification (GO:0016570);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: regulation of biological process (GO:0050789);; ","K06067|5.65466e-11|tcc:TCM_007621|K06067 histone deacetylase 1/2 [EC:3.5.1.98] | (RefSeq) Histone deacetylase 1 isoform 1","--","--","--","--","--","--","hypothetical protein B456_002G014800 [Gossypium raimondii]"]
["c93551.graph_c0","--","--","Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","--","--","Alcohol oxidase [Cercospora zeina]"]
["c45263.graph_c0","[R]","General function prediction only ","Molecular Function: transferase activity (GO:0016740);; ","--","[T]","Signal transduction mechanisms ","Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; TPR repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat","Protein NPGR2 OS=Arabidopsis thaliana OX=3702 GN=NPGR2 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA26052 [Gossypium barbadense]"]
["c38305.graph_c1","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; ","K14821|1.08126e-75|gra:105786409|K14821 bud site selection protein 20 | (RefSeq) zinc finger protein 593","[A]","RNA processing and modification ","Zinc-finger double-stranded RNA-binding","--","S","Function unknown","PREDICTED: zinc finger protein 593 [Gossypium raimondii] "]
["c30059.graph_c1","--","--","Cellular Component: cytosol (GO:0005829);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: COPII vesicle coat (GO:0030127);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: protein transport protein SEC23-like [Gossypium raimondii] "]
["c44720.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: folic acid binding (GO:0005542);; Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity (GO:0016740);; ","--","--","--","Formiminotransferase domain, N-terminal subdomain;; Essential protein Yae1, N terminal;; Formiminotransferase domain, N-terminal subdomain","--","E","Amino acid transport and metabolism","PREDICTED: formimidoyltransferase-cyclodeaminase-like [Gossypium raimondii] "]
["c51733.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to cytokinin (GO:0009735);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: large ribosomal subunit (GO:0015934);; ","K02876|1.30397e-34|spen:107020588|K02876 large subunit ribosomal protein L15 | (RefSeq) 50S ribosomal protein L15, chloroplastic","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A","50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL15 PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","50S ribosomal protein L15, chloroplastic [Herrania umbratica]"]
["c4804.graph_c1","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","reverse transcriptase [Corchorus capsularis]"]
["c42969.graph_c1","[G]","Carbohydrate transport and metabolism ","Biological Process: flavonoid biosynthetic process (GO:0009813);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: flavonoid glucuronidation (GO:0052696);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; ","K13691|0|tcc:TCM_019796|K13691 pathogen-inducible salicylic acid glucosyltransferase [EC:2.4.1.-] | (RefSeq) Uridine diphosphate glycosyltransferase 74E2 isoform 1","[GC]","--","UDP-glucoronosyl and UDP-glucosyl transferase;; Glycosyltransferase family 28 C-terminal domain","UDP-glycosyltransferase 74E2 OS=Arabidopsis thaliana OX=3702 GN=UGT74E2 PE=1 SV=1","S","Function unknown","UDP-glycosyltransferase 74E1-like [Durio zibethinus]"]
["c40859.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: pseudouridine synthesis (GO:0001522);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: pseudouridine synthase activity (GO:0009982);; ","--","[A]","RNA processing and modification ","--","RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g21770 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X2 [Gossypium raimondii]"]
["c44169.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; ","K08916|1.19441e-161|gra:105769916|K08916 light-harvesting complex II chlorophyll a/b binding protein 5 | (RefSeq) chlorophyll a-b binding protein CP26, chloroplastic","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB5 PE=1 SV=1","S","Function unknown","PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Gossypium raimondii] "]
["c38544.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: calcium:proton antiporter activity (GO:0015369);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: calcium ion transmembrane transport (GO:0070588);; ","K07300|0|gra:105778753|K07300 Ca2+:H+ antiporter | (RefSeq) vacuolar cation/proton exchanger 3-like","[P]","Inorganic ion transport and metabolism ","Sodium/calcium exchanger protein","Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana OX=3702 GN=CAX3 PE=1 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: vacuolar cation/proton exchanger 3-like isoform X1 [Gossypium raimondii] "]
["c66312.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107895577 [Gossypium hirsutum]"]
["c49057.graph_c1","[R]","General function prediction only ","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Tetratricopeptide repeat;; Mitochondrial 28S ribosomal protein S27;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Mitochondrial ATPase expression;; Tetratricopeptide repeat;; Evolutionarily conserved signalling intermediate in Toll pathway;; Mitochondrial ribonuclease P subunit (RPM2);; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR3 PE=1 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Gossypium raimondii] "]
["c29025.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Mitogen-activated protein kinase kinase kinase 5 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK5 PE=1 SV=1","T","Signal transduction mechanisms","Mitogen-activated protein kinase kinase kinase 1 [Gossypium arboreum]"]
["c32699.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: nuclear exosome (RNase complex) (GO:0000176);; Cellular Component: cytoplasmic exosome (RNase complex) (GO:0000177);; Molecular Function: exonuclease activity (GO:0004527);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytosol (GO:0005829);; Molecular Function: tRNA nucleotidyltransferase activity (GO:0009022);; Biological Process: rRNA catabolic process (GO:0016075);; Biological Process: rRNA 3'-end processing (GO:0031125);; Biological Process: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (GO:0034427);; Biological Process: U4 snRNA 3'-end processing (GO:0034475);; Biological Process: nuclear mRNA surveillance (GO:0071028);; Biological Process: polyadenylation-dependent snoRNA 3'-end processing (GO:0071051);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","K11600|5.49803e-157|gra:105802766|K11600 exosome complex component RRP41 | (RefSeq) exosome complex component RRP41","[J]","Translation, ribosomal structure and biogenesis ","3' exoribonuclease family, domain 1;; 3' exoribonuclease family, domain 2","Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: exosome complex component RRP41 [Gossypium raimondii] "]
["c27499.graph_c0","--","--","--","--","--","--","ERAP1-like C-terminal domain","--","E","Amino acid transport and metabolism","--"]
["c40894.graph_c0","[C]","Energy production and conversion ","Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Molecular Function: coniferyl-aldehyde dehydrogenase activity (GO:0050269);; Biological Process: oxidation-reduction process (GO:0055114);; ","K12355|0|gra:105780881|K12355 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] | (RefSeq) aldehyde dehydrogenase family 2 member C4-like","[C]","Energy production and conversion ","Aldehyde dehydrogenase family;; Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2","C","Energy production and conversion","PREDICTED: aldehyde dehydrogenase family 2 member C4-like [Gossypium raimondii] "]
["c93978.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein AQUCO_02700131v1 [Aquilegia coerulea]"]
["c82269.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cell wall (GO:0005618);; Biological Process: xyloglucan metabolic process (GO:0010411);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall biogenesis (GO:0042546);; Cellular Component: apoplast (GO:0048046);; Biological Process: cell wall organization (GO:0071555);; ","K08235|5.72097e-54|tcc:TCM_000870|K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] | (RefSeq) Xyloglucan endotransglycosylase","--","--","Glycosyl hydrolases family 16","Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana OX=3702 GN=XTH6 PE=2 SV=2","G","Carbohydrate transport and metabolism","probable xyloglucan endotransglucosylase/hydrolase protein 6 [Carica papaya]"]
["c42278.graph_c0","--","--","--","--","--","--","Armadillo/beta-catenin-like repeat;; HEAT repeats","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Gossypium hirsutum]"]
["c7584.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K04733|1.89004e-20|gra:105770403|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) protein LYK5-like","[T]","Signal transduction mechanisms ","--","--","T","Signal transduction mechanisms","lysM domain receptor-like kinase 3 [Durio zibethinus]"]
["c92857.graph_c0","--","--","--","--","[K]","Transcription ","--","Transcription factor MYB118 OS=Arabidopsis thaliana OX=3702 GN=MYB118 PE=2 SV=1","K","Transcription","transcription factor MYB44-like [Sesamum indicum]"]
["c48446.graph_c0","[T]","Signal transduction mechanisms ","Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: proplastid stroma (GO:0009571);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: photosystem II assembly (GO:0010207);; ","--","--","--","Domain of unknown function (DUF1995);; Cyclic nucleotide-binding domain;; Ion transport protein","Protein LOW PSII ACCUMULATION 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1","S","Function unknown","PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like [Gossypium hirsutum]"]
["c35267.graph_c0","--","--","--","K14442|2.41704e-38|tcc:TCM_022976|K14442 ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] | (RefSeq) RNA helicase family protein isoform 1","[A]","RNA processing and modification ","--","DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1","L","Replication, recombination and repair","DExH-box ATP-dependent RNA helicase DExH1 isoform X1 [Herrania umbratica]"]
["c93080.graph_c0","--","--","--","--","--","--","--","--","--","--","C6 transcription factor RosA [Aspergillus luchuensis]"]
["c56064.graph_c0","[GI]","Carbohydrate transport and metabolism ;; Lipid transport and metabolism ","Molecular Function: enzyme inhibitor activity (GO:0004857);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin catabolic process (GO:0045490);; ","K01051|0|gra:105788611|K01051 pectinesterase [EC:3.1.1.11] | (RefSeq) probable pectinesterase/pectinesterase inhibitor 33","--","--","Pectinesterase;; Plant invertase/pectin methylesterase inhibitor","Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana OX=3702 GN=PME33 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Gossypium arboreum]"]
["c43644.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: hydrolase activity (GO:0016787);; ","K12854|5.657e-41|gra:105776190|K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] | (RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like","[A]","RNA processing and modification ","--","DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1","L","Replication, recombination and repair","hypothetical protein GOBAR_DD15441 [Gossypium barbadense]"]
["c34207.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Mitochondrial biogenesis protein AIM24 [Cynara cardunculus var. scolymus]"]
["c71946.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18587380 [Theobroma cacao] "]
["c50309.graph_c0","--","--","--","--","--","--","--","CBL-interacting serine/threonine-protein kinase 18 OS=Arabidopsis thaliana OX=3702 GN=CIPK18 PE=1 SV=1","--","--","hypothetical protein GOBAR_AA15327 [Gossypium barbadense]"]
["c56605.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111291034 [Durio zibethinus]"]
["c33586.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_017741 [Vitis vinifera]"]
["c52427.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 71A1 OS=Persea americana OX=3435 GN=CYP71A1 PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","Cytochrome P450 71A1 [Theobroma cacao]"]
["c35846.graph_c0","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: negative regulation of ethylene-activated signaling pathway (GO:0010105);; Cellular Component: integral component of membrane (GO:0016021);; ","K20726|3.73086e-122|tcc:TCM_037281|K20726 transmembrane protein 222 | (RefSeq) Uncharacterized protein isoform 1","[S]","Function unknown ","Protein of unknown function (DUF778)","Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana OX=3702 GN=RTE1 PE=1 SV=1","S","Function unknown","PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Theobroma cacao] "]
["c54415.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: aminopeptidase activity (GO:0004177);; Biological Process: proteolysis (GO:0006508);; Molecular Function: metallopeptidase activity (GO:0008237);; Molecular Function: zinc ion binding (GO:0008270);; ","K08776|1.76923e-46|gra:105802563|K08776 puromycin-sensitive aminopeptidase [EC:3.4.11.-] | (RefSeq) aminopeptidase M1","[EO]","--","--","Aminopeptidase M1 OS=Arabidopsis thaliana OX=3702 GN=APM1 PE=1 SV=1","E","Amino acid transport and metabolism","Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase [Corchorus olitorius]"]
["c32452.graph_c1","[P]","Inorganic ion transport and metabolism ","Molecular Function: carbonate dehydratase activity (GO:0004089);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: carbon utilization (GO:0015976);; ","K01673|1.11877e-77|gra:105784976|K01673 carbonic anhydrase [EC:4.2.1.1] | (RefSeq) carbonic anhydrase 2-like","[P]","Inorganic ion transport and metabolism ","Carbonic anhydrase","Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum OX=4097 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: carbonic anhydrase 2-like [Gossypium arboreum]"]
["c49280.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain","Receptor-like cytoplasmic kinase 176 OS=Oryza sativa subsp. japonica OX=39947 GN=RLCK176 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA29030 [Gossypium barbadense]"]
["c14225.graph_c0","--","--","--","--","[S]","Function unknown ","--","WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1","S","Function unknown","PREDICTED: WD repeat-containing protein 26-like [Gossypium hirsutum] "]
["c87691.graph_c0","[K]","Transcription ","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: membrane (GO:0016020);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","[R]","General function prediction only ","Leucine Rich repeats (2 copies);; Leucine rich repeat;; Leucine Rich Repeat;; Leucine Rich repeat","Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana OX=3702 GN=At1g17230 PE=2 SV=2","S","Function unknown","hypothetical protein DCAR_000584 [Daucus carota subsp. sativus]"]
["c19531.graph_c0","--","--","--","--","[K]","Transcription ","DNA-binding nuclear phosphoprotein p8","--","K","Transcription","--"]
["c27437.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase","Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana OX=3702 GN=At4g36180 PE=1 SV=1","S","Function unknown","probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Durio zibethinus]"]
["c49037.graph_c2","--","--","--","K04523|0|gra:105785991|K04523 ubiquilin | (RefSeq) ubiquitin domain-containing protein DSK2a-like","[OR]","--","Ubiquitin family;; Ubiquitin-2 like Rad60 SUMO-like","Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana OX=3702 GN=DSK2B PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA04665 [Gossypium barbadense]"]
["c46260.graph_c0","--","--","--","--","--","--","Kelch motif;; Kelch motif;; Kelch motif","F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana OX=3702 GN=At3g24760 PE=2 SV=1","S","Function unknown","F-box/kelch-repeat protein At3g24760-like [Durio zibethinus]"]
["c48735.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[K]","Transcription ","RING/Ubox like zinc-binding domain;; Zinc finger, C3HC4 type (RING finger)","--","K","Transcription","PREDICTED: uncharacterized protein LOC105800001 [Gossypium raimondii] "]
["c80216.graph_c0","--","--","Cellular Component: nucleoplasm (GO:0005654);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to cold (GO:0009409);; Biological Process: response to blue light (GO:0009637);; Biological Process: flower development (GO:0009908);; Biological Process: response to far red light (GO:0010218);; Biological Process: temperature compensation of the circadian clock (GO:0010378);; Biological Process: cell differentiation (GO:0030154);; Biological Process: response to hydrogen peroxide (GO:0042542);; Biological Process: positive regulation of long-day photoperiodism, flowering (GO:0048578);; ","K12124|2.0489e-109|osa:4325329|K12124 GIGANTEA | (RefSeq) GI; protein GIGANTEA","--","--","--","Protein GIGANTEA OS=Oryza sativa subsp. japonica OX=39947 GN=GI PE=2 SV=2","S","Function unknown","putative gigantea [Oryza sativa Japonica Group]"]
["c46704.graph_c0","--","--","--","--","--","--","--","Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana OX=3702 GN=GEX1 PE=1 SV=1","S","Function unknown","PREDICTED: protein GAMETE EXPRESSED 1-like [Gossypium hirsutum] "]
["c7407.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","[OW]","--","Matrixin","Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana OX=3702 GN=1MMP PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["c75487.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: fruit dehiscence (GO:0010047);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","--","--","--","--","K","Transcription","hypothetical protein GOBAR_DD19091 [Gossypium barbadense]"]
["c8594.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K17506|2.16309e-26|tcc:TCM_015363|K17506 protein phosphatase 1L [EC:3.1.3.16] | (RefSeq) Phosphatase 2C 76 isoform 1","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana OX=3702 GN=At5g53140 PE=2 SV=1","T","Signal transduction mechanisms","probable protein phosphatase 2C 76 [Carica papaya]"]
["c4978.graph_c0","--","--","--","K02920|6.73571e-45|fve:101314417|K02920 large subunit ribosomal protein L36e | (RefSeq) 60S ribosomal protein L36-2-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L36e","60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2","J","Translation, ribosomal structure and biogenesis","PREDICTED: 60S ribosomal protein L36-2-like [Fragaria vesca subsp. vesca]"]
["c46257.graph_c1","--","--","--","--","--","--","--","GDSL esterase/lipase At3g48460 OS=Arabidopsis thaliana OX=3702 GN=At3g48460 PE=2 SV=1","--","--","hypothetical protein B456_002G190400 [Gossypium raimondii]"]
["c48917.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107890790 isoform X1 [Gossypium hirsutum]"]
["c36829.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Epidermal patterning factor proteins","EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1","S","Function unknown","EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Durio zibethinus]"]
["c47606.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105798220 isoform X1 [Gossypium raimondii] "]
["c40620.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-H2 zinc finger domain;; Zinc finger, C3HC4 type (RING finger);; RING-like zinc finger;; Zinc finger, C3HC4 type (RING finger);; RING-type zinc-finger;; Anaphase-promoting complex subunit 11 RING-H2 finger","NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","NEP1-interacting protein-like 1 [Durio zibethinus]"]
["c48285.graph_c0","--","--","--","--","--","--","Protein BYPASS1-related;; Protein of unknown function (DUF677)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108489698 [Gossypium arboreum]"]
["c92722.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: threonine-type endopeptidase activity (GO:0004298);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Cellular Component: proteasome core complex, alpha-subunit complex (GO:0019773);; ","K02729|2.83162e-31|bvg:104905638|K02729 20S proteasome subunit alpha 5 [EC:3.4.25.1] | (RefSeq) proteasome subunit alpha type-5-like","[O]","Posttranslational modification, protein turnover, chaperones ","Proteasome subunit A N-terminal signature;; Proteasome subunit","Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana OX=3702 GN=PAE1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein BATDEDRAFT_30413 [Batrachochytrium dendrobatidis JAM81] "]
["c42153.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Domain of unknown function (DUF296)","AT-hook motif nuclear-localized protein 17 OS=Arabidopsis thaliana OX=3702 GN=AHL17 PE=2 SV=1","S","Function unknown","PREDICTED: AT-hook motif nuclear-localized protein 17-like [Gossypium raimondii] "]
["c81142.graph_c0","--","--","--","--","--","--","--","--","Z","Cytoskeleton","--"]
["c77673.graph_c0","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to hypoxia (GO:0071456);; ","--","--","--","--","Berberine bridge enzyme-like 3 OS=Arabidopsis thaliana OX=3702 GN=FOX1 PE=2 SV=1","C","Energy production and conversion","FAD-binding Berberine family protein [Arabidopsis thaliana] "]
["c18005.graph_c0","--","--","--","K01166|1.54707e-47|gra:105774480|K01166 ribonuclease T2 [EC:3.1.27.1] | (RefSeq) ribonuclease 1-like","[A]","RNA processing and modification ","Ribonuclease T2 family","Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1","S","Function unknown","ribonuclease 1-like [Durio zibethinus]"]
["c64311.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Molecular Function: metal ion binding (GO:0046872);; ","K02978|1.56381e-33|bdi:100839931|K02978 small subunit ribosomal protein S27e | (RefSeq) 40S ribosomal protein S27","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S27","40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S27 [Agaricus bisporus var. bisporus H97] "]
["c37324.graph_c0","[IR]","Lipid transport and metabolism ;; General function prediction only ","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; GDSL-like Lipase/Acylhydrolase","Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E35 PE=3 SV=2","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Gossypium arboreum] "]
["c25571.graph_c1","--","--","Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; ","--","--","--","Protease inhibitor/seed storage/LTP family","Non-specific lipid-transfer protein OS=Gossypium hirsutum OX=3635 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","lipid transfer protein [Gossypium turneri] "]
["c42504.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450","Cytochrome P450 94C1 OS=Arabidopsis thaliana OX=3702 GN=CYP94C1 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: cytochrome P450 94C1-like [Gossypium hirsutum]"]
["c40219.graph_c1","--","--","Biological Process: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) (GO:0002103);; Cellular Component: chloroplast (GO:0009507);; Biological Process: plastid organization (GO:0009657);; ","--","--","--","--","Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF5 PE=1 SV=1","S","Function unknown","PREDICTED: multiple organellar RNA editing factor 2, chloroplastic-like [Gossypium hirsutum]"]
["c30073.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","[GC]","--","UDP-glucoronosyl and UDP-glucosyl transferase","7-deoxyloganetin glucosyltransferase OS=Catharanthus roseus OX=4058 GN=UGT85A23 PE=1 SV=1","S","Function unknown","PREDICTED: 7-deoxyloganetin glucosyltransferase [Gossypium raimondii] "]
["c41951.graph_c0","--","--","Biological Process: negative regulation of abscisic acid-activated signaling pathway (GO:0009788);; Cellular Component: integral component of membrane (GO:0016021);; ","K07297|6.12531e-121|gra:105783992|K07297 adiponectin receptor | (RefSeq) heptahelical transmembrane protein 1-like","[RT]","--","Haemolysin-III related","Heptahelical transmembrane protein 1 OS=Arabidopsis thaliana OX=3702 GN=HHP1 PE=1 SV=1","S","Function unknown","PREDICTED: heptahelical transmembrane protein 1-like [Gossypium raimondii] "]
["c65150.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1635)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107960696 [Gossypium hirsutum]"]
["c42369.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: cleavage involved in rRNA processing (GO:0000469);; Biological Process: maturation of LSU-rRNA (GO:0000470);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; Biological Process: rRNA pseudouridine synthesis (GO:0031118);; Biological Process: snRNA pseudouridine synthesis (GO:0031120);; Cellular Component: box H/ACA snoRNP complex (GO:0031429);; Molecular Function: box H/ACA snoRNA binding (GO:0034513);; ","K11129|1.26122e-92|gra:105788504|K11129 H/ACA ribonucleoprotein complex subunit 2 | (RefSeq) H/ACA ribonucleoprotein complex subunit 2-like protein","[A]","RNA processing and modification ","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family","H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Gossypium hirsutum]"]
["c57486.graph_c0","[R]","General function prediction only ","Molecular Function: phosphorelay sensor kinase activity (GO:0000155);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: detection of visible light (GO:0009584);; Biological Process: red, far-red light phototransduction (GO:0009585);; Biological Process: gravitropism (GO:0009630);; Biological Process: phototropism (GO:0009638);; Biological Process: photomorphogenesis (GO:0009640);; Biological Process: far-red light signaling pathway (GO:0010018);; Biological Process: red light signaling pathway (GO:0010161);; Biological Process: response to continuous far red light stimulus by the high-irradiance response system (GO:0010201);; Biological Process: response to very low fluence red light stimulus (GO:0010203);; Cellular Component: nuclear body (GO:0016604);; Biological Process: protein-tetrapyrrole linkage (GO:0017006);; Biological Process: negative regulation of translation (GO:0017148);; Biological Process: protein-chromophore linkage (GO:0018298);; Biological Process: signal transduction by protein phosphorylation (GO:0023014);; Molecular Function: far-red light photoreceptor activity (GO:0031516);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: response to arsenic-containing substance (GO:0046685);; ","K12120|0|gra:105782636|K12120 phytochrome A | (RefSeq) phytochrome A-like","--","--","PAS fold;; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase;; His Kinase A (phospho-acceptor) domain","Phytochrome A OS=Arabidopsis thaliana OX=3702 GN=PHYA PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: phytochrome A-like isoform X2 [Gossypium arboreum]"]
["c36816.graph_c0","--","--","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: myosin complex (GO:0016459);; ","K10357|1.03777e-42|gra:105792297|K10357 myosin V | (RefSeq) myosin-16","[Z]","Cytoskeleton ","--","Myosin-16 OS=Arabidopsis thaliana OX=3702 GN=XI-J PE=2 SV=1","Z","Cytoskeleton","hypothetical protein GOBAR_DD10281 [Gossypium barbadense]"]
["c83132.graph_c0","--","--","Cellular Component: gamma-tubulin complex (GO:0000930);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: cytoplasmic microtubule organization (GO:0031122);; ","--","--","--","--","--","S","Function unknown","putative tubulin gamma chain protein [Botrytis cinerea BcDW1]"]
["c47657.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Nicotiana tabacum]"]
["c38774.graph_c0","--","--","--","K15627|1.84543e-122|gra:105775838|K15627 tether containing UBX domain for GLUT4 | (RefSeq) plant UBX domain-containing protein 1-like","[O]","Posttranslational modification, protein turnover, chaperones ","UBX domain","Plant UBX domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PUX1 PE=1 SV=1","S","Function unknown","hypothetical protein B456_012G089800, partial [Gossypium raimondii]"]
["c34341.graph_c0","[S]","Function unknown ","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","SNARE associated Golgi protein","--","S","Function unknown","hypothetical protein GOBAR_AA35350 [Gossypium barbadense]"]
["c28275.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: glutamate-ammonia ligase activity (GO:0004356);; Molecular Function: ATP binding (GO:0005524);; Biological Process: glutamine biosynthetic process (GO:0006542);; Cellular Component: chloroplast (GO:0009507);; ","K01915|6.4835e-30|fve:101302825|K01915 glutamine synthetase [EC:6.3.1.2] | (RefSeq) glutamine synthetase leaf isozyme, chloroplastic","[E]","Amino acid transport and metabolism ","--","Glutamine synthetase, chloroplastic OS=Brassica napus OX=3708 GN=GLN2 PE=2 SV=1","E","Amino acid transport and metabolism","chloroplastic glutamine synthetase, partial [Helianthus annuus]"]
["c24605.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","Protein SRG1 OS=Arabidopsis thaliana OX=3702 GN=SRG1 PE=2 SV=1","S","Function unknown","protein SRG1-like [Durio zibethinus]"]
["c48242.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana OX=3702 GN=At1g09160 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein F383_08660 [Gossypium arboreum]"]
["c47659.graph_c0","--","--","Cellular Component: plasmodesma (GO:0009506);; Cellular Component: Golgi transport complex (GO:0017119);; ","K20295|0|gra:105792955|K20295 conserved oligomeric Golgi complex subunit 8 | (RefSeq) conserved oligomeric Golgi complex subunit 8","[U]","Intracellular trafficking, secretion, and vesicular transport ","Dor1-like family;; Vps51/Vps67","--","S","Function unknown","PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Gossypium hirsutum]"]
["c54894.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","--","[R]","General function prediction only ","--","Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana OX=3702 GN=At1g05150 PE=1 SV=1","S","Function unknown","hypothetical protein CCACVL1_09008, partial [Corchorus capsularis]"]
["c93199.graph_c0","--","--","Molecular Function: neurotransmitter:sodium symporter activity (GO:0005328);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: neurotransmitter transport (GO:0006836);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","--","--","P","Inorganic ion transport and metabolism","hypothetical protein SNOG_04273 [Parastagonospora nodorum SN15] "]
["c36535.graph_c1","[K]","Transcription ","--","--","[R]","General function prediction only ","Leucine Rich repeat;; F-box domain","F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana OX=3702 GN=FBL10 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD04063 [Gossypium barbadense]"]
["c37223.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","K10664|3.78627e-159|gra:105797231|K10664 E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] | (RefSeq) RING-H2 finger protein ATL11-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-like zinc finger;; Zinc finger, C3HC4 type (RING finger);; RING-H2 zinc finger domain;; Zinc finger, C3HC4 type (RING finger);; Anaphase-promoting complex subunit 11 RING-H2 finger","RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: RING-H2 finger protein ATL11-like [Gossypium raimondii] "]
["c1574.graph_c0","--","--","--","--","--","--","Chlorophyll A-B binding protein","Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1","S","Function unknown","PREDICTED: early light-induced protein 1, chloroplastic-like [Fragaria vesca subsp. vesca]"]
["c39646.graph_c3","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2","S","Function unknown","dof zinc finger protein DOF1.4-like [Durio zibethinus]"]
["c47566.graph_c0","[C]","Energy production and conversion ","Biological Process: tricarboxylic acid cycle (GO:0006099);; Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);; Biological Process: carbon fixation (GO:0015977);; ","K01595|0|gra:105798019|K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31] | (RefSeq) phosphoenolpyruvate carboxylase 1","--","--","Phosphoenolpyruvate carboxylase","Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia OX=4227 GN=PPCC PE=1 SV=1","C","Energy production and conversion","phosphoenolpyruvate carboxylase 2 [Gossypium hirsutum] "]
["c48235.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","K02377|0|gra:105769730|K02377 GDP-L-fucose synthase [EC:1.1.1.271] | (RefSeq) GDP-L-fucose synthase 1-like","[GO]","--","NAD dependent epimerase/dehydratase family;; GDP-mannose 4,6 dehydratase;; RmlD substrate binding domain","Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana OX=3702 GN=GER2 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein B456_009G008600 [Gossypium raimondii]"]
["c57165.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: viral nucleocapsid (GO:0019013);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","K12854|1.09572e-45|gra:105776190|K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] | (RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like","[A]","RNA processing and modification ","Sec63 Brl domain","DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1","L","Replication, recombination and repair","DExH-box ATP-dependent RNA helicase DExH12-like [Durio zibethinus]"]
["c43409.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion transmembrane transporter activity (GO:0046873);; Biological Process: transmembrane transport (GO:0055085);; ","K16075|6.62623e-106|tcc:TCM_004202|K16075 magnesium transporter | (RefSeq) Magnesium transporter MRS2-2 isoform 1","[P]","Inorganic ion transport and metabolism ","--","Magnesium transporter MRS2-2 OS=Arabidopsis thaliana OX=3702 GN=MRS2-2 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","Magnesium transporter MRS2-2 isoform 2 [Theobroma cacao]"]
["c42550.graph_c0","--","--","Molecular Function: ubiquitin binding (GO:0043130);; ","--","[S]","Function unknown ","Ubiquitin-binding domain;; Ubiquitin-binding domain","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD24033 [Gossypium barbadense]"]
["c34814.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","--","U-box domain","E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Gossypium raimondii] "]
["c29137.graph_c4","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Phosphate transporter PHO1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=PHO1-H2 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein B456_005G142500 [Gossypium raimondii]"]
["c3964.graph_c0","--","--","--","--","--","--","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC104223314 [Nicotiana sylvestris]"]
["c50062.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA15727 [Gossypium barbadense]"]
["c54280.graph_c0","--","--","--","K13947|1.33377e-09|cit:102622325|K13947 auxin efflux carrier family | (RefSeq) auxin efflux carrier component 1-like","--","--","--","Auxin efflux carrier component 1a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1A PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","auxin efflux carrier component 1-like protein [Trifolium pratense]"]
["c38239.graph_c1","--","--","Biological Process: regulation of cyclin-dependent protein serine/threonine kinase activity (GO:0000079);; Molecular Function: protein kinase binding (GO:0019901);; ","--","[R]","General function prediction only ","Cyclin;; Cyclin, N-terminal domain","Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1","S","Function unknown","cyclin-U4-1-like [Durio zibethinus]"]
["c58667.graph_c0","--","--","--","K09874|4.03484e-07|gmx:100804356|K09874 aquaporin NIP | (RefSeq) probable aquaporin NIP5-1","--","--","--","--","--","--","--"]
["c39943.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]"]
["c21464.graph_c1","--","--","Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; ","K15285|1.1551e-54|gra:105788095|K15285 solute carrier family 35, member E3 | (RefSeq) uncharacterized membrane protein At1g06890-like","[GE]","--","--","Nucleotide-sugar uncharacterized transporter 1 OS=Arabidopsis thaliana OX=3702 GN=At5g57100 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized membrane protein At1g06890-like [Gossypium arboreum]"]
["c5257.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; Molecular Function: aromatase activity (GO:0070330);; ","K15402|3.08488e-125|tcc:TCM_007730|K15402 fatty acid omega-hydroxylase [EC:1.14.-.-] | (RefSeq) Cytochrome P450, family 86, subfamily B, polypeptide 1 isoform 1","[QI]","--","Cytochrome P450","Cytochrome P450 86B1 OS=Arabidopsis thaliana OX=3702 GN=CYP86B1 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Cytochrome P450 [Corchorus olitorius]"]
["c27974.graph_c2","--","--","--","--","--","--","--","--","J","Translation, ribosomal structure and biogenesis","--"]
["c57606.graph_c0","--","--","Molecular Function: non-membrane spanning protein tyrosine kinase activity (GO:0004715);; Molecular Function: ATP binding (GO:0005524);; Biological Process: peptidyl-tyrosine phosphorylation (GO:0018108);; ","--","[T]","Signal transduction mechanisms ","--","--","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA12907 [Gossypium barbadense]"]
["c51947.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD01439 [Gossypium barbadense]"]
["c65064.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111277800 [Durio zibethinus]"]
["c42338.graph_c0","--","--","--","--","--","--","GRAM domain","GEM-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=FIP1 PE=1 SV=1","S","Function unknown","GEM-like protein 1 [Gossypium arboreum]"]
["c50119.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K08494|3.39042e-29|gra:105789915|K08494 novel plant SNARE | (RefSeq) novel plant SNARE 11-like","--","--","--","Novel plant SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=NPSN11 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: novel plant SNARE 11-like [Gossypium hirsutum]"]
["c22198.graph_c0","[CIR]","Energy production and conversion ;; Lipid transport and metabolism ;; General function prediction only ","Cellular Component: peroxisome (GO:0005777);; Biological Process: oxidative photosynthetic carbon pathway (GO:0009854);; Molecular Function: FMN binding (GO:0010181);; Molecular Function: very-long-chain-(S)-2-hydroxy-acid oxidase activity (GO:0052852);; Molecular Function: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity (GO:0052853);; Molecular Function: medium-chain-(S)-2-hydroxy-acid oxidase activity (GO:0052854);; Biological Process: oxidation-reduction process (GO:0055114);; ","K11517|1.86716e-45|fve:101292384|K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] | (RefSeq) peroxisomal (S)-2-hydroxy-acid oxidase","[C]","Energy production and conversion ","FMN-dependent dehydrogenase","Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea OX=3562 PE=1 SV=1","C","Energy production and conversion","PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase isoform X1 [Fragaria vesca subsp. vesca]"]
["c45766.graph_c1","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; ","K13093|0|gra:105788312|K13093 HIV Tat-specific factor 1 | (RefSeq) splicing factor U2AF-associated protein 2","[K]","Transcription ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1","S","Function unknown","PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Gossypium arboreum]"]
["c43116.graph_c0","[R]","General function prediction only ","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: integral component of membrane (GO:0016021);; ","K09775|1.23399e-20|gra:105794535|K09775 uncharacterized protein | (RefSeq) uncharacterized LOC105794535","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized membrane protein YuiD [Gossypium arboreum] "]
["c18085.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_010G009000 [Gossypium raimondii] "]
["c26125.graph_c1","--","--","Molecular Function: RNA binding (GO:0003723);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Molecular Function: ribonuclease T2 activity (GO:0033897);; Biological Process: RNA phosphodiester bond hydrolysis, endonucleolytic (GO:0090502);; ","K01166|8.92677e-18|cic:CICLE_v10032651mg|K01166 ribonuclease T2 [EC:3.1.27.1] | (RefSeq) hypothetical protein","[A]","RNA processing and modification ","Ribonuclease T2 family","Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2","S","Function unknown","extracellular ribonuclease LE [Citrus clementina] "]
["c43504.graph_c1","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: beta-glucosidase activity (GO:0008422);; Cellular Component: plant-type cell wall (GO:0009505);; Molecular Function: scopolin beta-glucosidase activity (GO:0102483);; ","--","--","--","Glycosyl hydrolase family 3 C-terminal domain;; Glycosyl hydrolase family 3 N terminal domain","Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BXL2 PE=2 SV=1","G","Carbohydrate transport and metabolism","Beta-xylosidase 2 [Theobroma cacao]"]
["c82452.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","K09667|1.39072e-12|nnu:104612645|K09667 protein O-GlcNAc transferase [EC:2.4.1.255] | (RefSeq) probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC","[GOT]","--","Glycosyl transferase family 41","Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase, partial [Phytophthora palmivora var. palmivora]"]
["c55598.graph_c0","--","--","Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; ","K11643|2.23407e-50|gra:105768713|K11643 chromodomain-helicase-DNA-binding protein 4 [EC:3.6.4.12] | (RefSeq) helicase protein MOM1-like","--","--","--","--","L","Replication, recombination and repair","PREDICTED: helicase protein MOM1-like isoform X2 [Gossypium arboreum]"]
["c44550.graph_c0","--","--","--","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor bHLH96-like [Gossypium arboreum] "]
["c40818.graph_c0","--","--","--","--","--","--","Extensin-like region","--","--","--","Uncharacterized protein TCM_020081 isoform 3, partial [Theobroma cacao]"]
["c72494.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein BC332_23229 [Capsicum chinense]"]
["c50178.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1","K","Transcription","protein RADIALIS-like 3 [Durio zibethinus]"]
["c51361.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","formin-like protein 2 [Durio zibethinus]"]
["c25854.graph_c0","[C]","Energy production and conversion ","Biological Process: mitochondrial genome maintenance (GO:0000002);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: aconitate hydratase activity (GO:0003994);; Cellular Component: cytosol (GO:0005829);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Biological Process: lysine biosynthetic process via aminoadipic acid (GO:0019878);; Cellular Component: mitochondrial nucleoid (GO:0042645);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; ","K01681|6.87345e-116|cme:CYME_CMT561C|K01681 aconitate hydratase [EC:4.2.1.3] | (RefSeq) aconitate hydratase","[CE]","--","Aconitase C-terminal domain;; Aconitase family (aconitate hydratase)","Aconitate hydratase, mitochondrial OS=Gracilaria gracilis OX=2777 PE=3 SV=1","C","Energy production and conversion","aconitase, partial [Aspergillus nidulans]"]
["c22915.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","--","--","reverse transcriptase [Corchorus capsularis]"]
["c95010.graph_c0","--","--","--","--","--","--","Leucine rich repeat N-terminal domain","--","--","--","PREDICTED: receptor like protein 30-like [Gossypium arboreum]"]
["c25025.graph_c1","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","hypothetical protein CRG98_013917 [Punica granatum]"]
["c39489.graph_c0","--","--","--","--","--","--","--","NAC domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=NAC037 PE=1 SV=1","S","Function unknown","PREDICTED: NAC domain-containing protein 37 isoform X2 [Theobroma cacao] "]
["c85184.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c62972.graph_c0","--","--","Cellular Component: extracellular region (GO:0005576);; Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; Cellular Component: membrane (GO:0016020);; ","--","--","--","Probable lipid transfer","Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata OX=3917 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","non-specific lipid-transfer protein 2-like [Durio zibethinus]"]
["c59813.graph_c0","--","--","--","--","--","--","F-box domain","--","S","Function unknown","F-box and associated interaction domains-containing protein, putative isoform 2, partial [Theobroma cacao]"]
["c89001.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: hydrolase activity (GO:0016787);; ","K03234|2.50338e-26|crb:CARUB_v100127480m|K03234 elongation factor 2 | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor G C-terminus","Elongation factor 2 OS=Arabidopsis thaliana OX=3702 GN=LOS1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","P-loop containing nucleoside triphosphate hydrolase [Phellinus noxius]"]
["c84736.graph_c0","--","--","Molecular Function: protein binding (GO:0005515);; ","K17275|3.86691e-16|egr:104425680|K17275 plastin-1 | (RefSeq) fimbrin-2","[Z]","Cytoskeleton ","Calponin homology (CH) domain","Fimbrin-2 OS=Arabidopsis thaliana OX=3702 GN=FIM2 PE=2 SV=1","Z","Cytoskeleton","hypothetical protein METBIDRAFT_11074 [Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993] "]
["c22732.graph_c0","--","--","Biological Process: primary metabolic process (GO:0044238);; Biological Process: single-organism metabolic process (GO:0044710);; Biological Process: organic substance metabolic process (GO:0071704);; ","K00036|1.50313e-08|tcc:TCM_008602|K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] | (RefSeq) Glucose-6-phosphate 1-dehydrogenase 2 isoform 1","--","--","--","--","--","--","Glucose-6-phosphate dehydrogenase 2 isoform 2 [Theobroma cacao]"]
["c45216.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K13754|1.29492e-146|gra:105804398|K13754 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 | (RefSeq) cation/calcium exchanger 1","[P]","Inorganic ion transport and metabolism ","Sodium/calcium exchanger protein","Cation/calcium exchanger 1 OS=Arabidopsis thaliana OX=3702 GN=CCX1 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: cation/calcium exchanger 1-like [Gossypium hirsutum]"]
["c84723.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein Y057_14066 [Fusarium fujikuroi] "]
["c94074.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Spectrin repeat","--","Z","Cytoskeleton","--"]
["c47401.graph_c1","--","--","Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: leaf vascular tissue pattern formation (GO:0010305);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Biological Process: primary root development (GO:0080022);; ","--","--","--","NPH3 family;; NPH3 family","BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana OX=3702 GN=DOT3 PE=2 SV=1","S","Function unknown","BTB/POZ domain-containing protein DOT3-like isoform X2 [Hevea brasiliensis]"]
["c48198.graph_c0","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: membrane (GO:0016020);; Biological Process: methylation (GO:0032259);; ","--","--","--","CW-type Zinc Finger","Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana OX=3702 GN=ASHH2 PE=1 SV=1","S","Function unknown","PREDICTED: histone-lysine N-methyltransferase ASHH2-like isoform X2 [Gossypium hirsutum]"]
["c6363.graph_c1","--","--","Cellular Component: intracellular (GO:0005622);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: protein-disulfide reductase activity (GO:0047134);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","C1 domain;; C1 domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107902453 [Gossypium hirsutum]"]
["c48453.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: metalloendopeptidase activity (GO:0004222);; Biological Process: proteolysis (GO:0006508);; ","--","--","--","Peptidase family M48;; Transcription factor e(y)2;; Transcription factor e(y)2","Transcription and mRNA export factor ENY2 OS=Arabidopsis thaliana OX=3702 GN=At3g27100 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC105769614 isoform X2 [Gossypium raimondii] "]
["c5589.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: polysaccharide binding (GO:0030247);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","Putative RING-H2 finger protein ATL21C OS=Arabidopsis thaliana OX=3702 GN=ATL21C PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_003G079900, partial [Gossypium raimondii]"]
["c90528.graph_c0","--","--","Biological Process: mitochondrion inheritance (GO:0000001);; Biological Process: actin cortical patch assembly (GO:0000147);; Molecular Function: mRNA binding (GO:0003729);; Molecular Function: structural molecule activity (GO:0005198);; Cellular Component: nucleus (GO:0005634);; Cellular Component: actomyosin contractile ring (GO:0005826);; Cellular Component: cytosol (GO:0005829);; Cellular Component: Arp2/3 protein complex (GO:0005885);; Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: actin cortical patch (GO:0030479);; Cellular Component: medial cortex (GO:0031097);; Cellular Component: extrinsic component of mitochondrial outer membrane (GO:0031315);; Biological Process: methylation (GO:0032259);; Biological Process: Arp2/3 complex-mediated actin nucleation (GO:0034314);; Cellular Component: mating projection tip (GO:0043332);; ","--","[Z]","Cytoskeleton ","ARP2/3 complex 16 kDa subunit (p16-Arc)","--","A","RNA processing and modification","arp2/3 complex 16 kDa subunit [Cryptococcus depauperatus CBS 7855]"]
["c38379.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111296336 [Durio zibethinus] "]
["c44538.graph_c0","[S]","Function unknown ","--","--","[R]","General function prediction only ","Uncharacterised protein family (UPF0160)","--","S","Function unknown","PREDICTED: UPF0160 protein-like isoform X1 [Gossypium raimondii] "]
["c37901.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: transcription factor kayak-like [Gossypium raimondii] "]
["c43525.graph_c0","--","--","Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: transferase activity (GO:0016740);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111289941 isoform X2 [Durio zibethinus]"]
["c16773.graph_c0","--","--","Biological Process: response to auxin (GO:0009733);; ","K14488|1.85781e-88|gra:105765114|K14488 SAUR family protein | (RefSeq) uncharacterized LOC105765114","--","--","Auxin responsive protein","Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-responsive protein SAUR36-like [Gossypium hirsutum]"]
["c18573.graph_c0","--","--","Biological Process: protein ubiquitination (GO:0016567);; ","--","--","--","NPH3 family","Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2","S","Function unknown","root phototropism protein 3 isoform X2 [Herrania umbratica]"]
["c27870.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2","S","Function unknown","PREDICTED: cyclic dof factor 1-like isoform X3 [Gossypium hirsutum]"]
["c22330.graph_c0","--","--","Molecular Function: sulfotransferase activity (GO:0008146);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","PREDICTED: nodulation protein H-like [Gossypium hirsutum]"]
["c90681.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K14497|3.25926e-53|fve:101307903|K14497 protein phosphatase 2C [EC:3.1.3.16] | (RefSeq) protein phosphatase 2C 16-like","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Protein phosphatase 2C 16 OS=Arabidopsis thaliana OX=3702 GN=HAB1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: protein phosphatase 2C 16-like isoform X2 [Fragaria vesca subsp. vesca]"]
["c50628.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A-like [Gossypium arboreum]"]
["c46047.graph_c0","[F]","Nucleotide transport and metabolism ","Biological Process: nucleotide metabolic process (GO:0009117);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","Myb/SANT-like DNA-binding domain;; Alcohol dehydrogenase transcription factor Myb/SANT-like","Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana OX=3702 GN=ASIL2 PE=1 SV=1","F","Nucleotide transport and metabolism","PREDICTED: uncharacterized protein LOC105761781 isoform X2 [Gossypium raimondii] "]
["c35001.graph_c0","--","--","--","--","--","--","Late embryogenesis abundant protein","Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2 SV=1","S","Function unknown","PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Gossypium raimondii] "]
["c8039.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2","K","Transcription","transcription factor bHLH94-like isoform X1 [Herrania umbratica]"]
["c42668.graph_c0","--","--","Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: metal ion transport (GO:0030001);; Biological Process: cellular transition metal ion homeostasis (GO:0046916);; ","--","[P]","Inorganic ion transport and metabolism ","Heavy-metal-associated domain","Heavy metal-associated isoprenylated plant protein 5 OS=Arabidopsis thaliana OX=3702 GN=HIPP05 PE=1 SV=2","S","Function unknown","PREDICTED: heavy metal-associated isoprenylated plant protein 3-like [Gossypium hirsutum]"]
["c45005.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K14684|1.10724e-180|jcu:105646137|K14684 solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41 | (RefSeq) probable mitochondrial adenine nucleotide transporter BTL1","[C]","Energy production and conversion ","Mitochondrial carrier protein","Probable mitochondrial adenine nucleotide transporter BTL1 OS=Arabidopsis thaliana OX=3702 GN=At3g20240 PE=2 SV=1","S","Function unknown","probable mitochondrial adenine nucleotide transporter BTL1 isoform X1 [Durio zibethinus]"]
["c77490.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: structural constituent of ribosome (GO:0003735);; Molecular Function: rRNA binding (GO:0019843);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02940|1.06286e-19|apro:F751_4820|K02940 large subunit ribosomal protein L9e | (RefSeq) 60S ribosomal protein L9","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L6","60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","60S ribosomal protein L9 [Botrytis cinerea B05.10] "]
["c25705.graph_c0","--","--","--","--","--","--","--","Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-7 PE=2 SV=2","--","--","--"]
["c37668.graph_c0","[K]","Transcription ","--","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana OX=3702 GN=PII-2 PE=2 SV=1","S","Function unknown","PREDICTED: piriformospora indica-insensitive protein 2-like [Gossypium hirsutum]"]
["c48202.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Family of unknown function (DUF716)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107924463 [Gossypium hirsutum]"]
["c45697.graph_c3","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","--","Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1","S","Function unknown","zinc finger protein WIP2-like [Durio zibethinus]"]
["c92514.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: tryptophan biosynthetic process (GO:0000162);; Molecular Function: tryptophan synthase activity (GO:0004834);; ","K01696|4.50625e-29|vvi:100264166|K01696 tryptophan synthase beta chain [EC:4.2.1.20] | (RefSeq) tryptophan synthase beta chain 1","[E]","Amino acid transport and metabolism ","--","Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays OX=4577 GN=TSB1 PE=2 SV=1","E","Amino acid transport and metabolism","probable tryptophan synthase [Claviceps purpurea 20.1]"]
["c93263.graph_c0","--","--","--","--","--","--","Fibronectin type II domain","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c42510.graph_c1","[C]","Energy production and conversion ","--","--","--","--","4Fe-4S binding domain;; Iron-Sulfur binding protein C terminal","--","C","Energy production and conversion","PREDICTED: uncharacterized protein LOC108481006 isoform X1 [Gossypium arboreum]"]
["c89783.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c44164.graph_c1","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","--","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 35 OS=Arabidopsis thaliana OX=3702 GN=At3g06270 PE=2 SV=1","T","Signal transduction mechanisms","probable protein phosphatase 2C 35 isoform X2 [Durio zibethinus]"]
["c54526.graph_c0","[K]","Transcription ","--","--","[R]","General function prediction only ","Leucine rich repeat N-terminal domain;; Leucine Rich repeats (2 copies);; Leucine rich repeat;; Leucine Rich Repeat","Leucine-rich repeat protein 1 OS=Capsicum annuum OX=4072 GN=LRR1 PE=1 SV=2","S","Function unknown","leucine-rich repeat protein 1-like isoform X1 [Durio zibethinus]"]
["c68248.graph_c0","--","--","--","--","--","--","Protein of unknown function, DUF538","--","S","Function unknown","hypothetical protein GOBAR_AA25206 [Gossypium barbadense]"]
["c47397.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Transmembrane Fragile-X-F protein;; Zinc finger, C3HC4 type (RING finger);; Transmembrane Fragile-X-F protein","Kinesin-like protein KIN-7D, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=KIN7D PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107888754 [Gossypium hirsutum]"]
["c54275.graph_c0","--","--","--","--","--","--","Thaumatin family","Thaumatin-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g18250 PE=2 SV=2","S","Function unknown","PREDICTED: thaumatin-like protein [Theobroma cacao] "]
["c24418.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105799219 isoform X1 [Gossypium raimondii] "]
["c48704.graph_c0","[C]","Energy production and conversion ","--","K01648|0|gra:105780193|K01648 ATP citrate (pro-S)-lyase [EC:2.3.3.8] | (RefSeq) ATP-citrate synthase alpha chain protein 1","[C]","Energy production and conversion ","ATP citrate lyase citrate-binding;; ATP-grasp domain","ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana OX=3702 GN=ACLA-2 PE=2 SV=1","C","Energy production and conversion","PREDICTED: ATP-citrate synthase alpha chain protein 1 [Gossypium hirsutum]"]
["c92181.graph_c0","--","--","--","--","--","--","--","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c18031.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","hypothetical protein B456_010G167700 [Gossypium raimondii]"]
["c52208.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: COMPASS-like H3K4 histone methylase component WDR5B [Gossypium hirsutum]"]
["c22225.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365);; Biological Process: glucose metabolic process (GO:0006006);; Molecular Function: NADP binding (GO:0050661);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00134|6.60907e-42|gra:105779478|K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] | (RefSeq) glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic","[G]","Carbohydrate transport and metabolism ","--","Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Oryza sativa subsp. japonica OX=39947 GN=GAPC2 PE=1 SV=1","G","Carbohydrate transport and metabolism","glyceraldehyde 3-phosphate dehydrogenase, partial [Lagenaria siceraria]"]
["c20461.graph_c0","--","--","--","--","--","--","Dof domain, zinc finger","--","--","--","PREDICTED: dof zinc finger protein DOF3.1 [Gossypium raimondii] "]
["c95418.graph_c0","--","--","Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);; Cellular Component: cytosol (GO:0005829);; Biological Process: S-adenosylmethioninamine biosynthetic process (GO:0006557);; Biological Process: spermine biosynthetic process (GO:0006597);; Biological Process: spermidine biosynthetic process (GO:0008295);; ","K01611|1.91782e-26|fve:101300649|K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] | (RefSeq) S-adenosylmethionine decarboxylase proenzyme-like","--","--","--","S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil OX=35883 GN=SAMDC PE=3 SV=1","E","Amino acid transport and metabolism","PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like isoform X1 [Fragaria vesca subsp. vesca]"]
["c25446.graph_c0","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10398|0|gra:105768204|K10398 kinesin family member 11 | (RefSeq) 125 kDa kinesin-related protein","[Z]","Cytoskeleton ","Kinesin motor domain","Kinesin-like protein KIN-5B OS=Arabidopsis thaliana OX=3702 GN=KIN5B PE=2 SV=1","Z","Cytoskeleton","kinesin-related protein [Gossypium arboreum]"]
["c27265.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein M427DRAFT_28034 [Gonapodya prolifera JEL478]"]
["c123.graph_c1","--","--","Biological Process: flavonoid biosynthetic process (GO:0009813);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: flavonoid glucuronidation (GO:0052696);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; ","K12356|1.43724e-24|gra:105763295|K12356 coniferyl-alcohol glucosyltransferase [EC:2.4.1.111] | (RefSeq) UDP-glycosyltransferase 72E1-like","[GC]","--","--","UDP-glycosyltransferase 72E1 OS=Arabidopsis thaliana OX=3702 GN=UGT72E1 PE=1 SV=1","S","Function unknown","UDP-glycosyltransferase 72E1-like [Durio zibethinus]"]
["c46108.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K14314|0|gra:105798358|K14314 nuclear pore complex protein Nup210 | (RefSeq) nuclear pore complex protein GP210","[YU]","--","Bacterial Ig-like domain (group 2);; Bacterial Ig-like domain (group 2)","Nuclear pore complex protein GP210 OS=Arabidopsis thaliana OX=3702 GN=GB210 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: nuclear pore complex protein GP210 [Gossypium arboreum]"]
["c44643.graph_c0","--","--","Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[I]","Lipid transport and metabolism ","CRAL/TRIO domain;; CRAL/TRIO, N-terminal domain","Patellin-5 OS=Arabidopsis thaliana OX=3702 GN=PATL5 PE=1 SV=2","S","Function unknown","PREDICTED: patellin-3-like [Gossypium arboreum] "]
["c29880.graph_c0","--","--","--","--","--","--","Gibberellin regulated protein","Gibberellin-regulated protein 8 OS=Arabidopsis thaliana OX=3702 GN=At2g39540 PE=2 SV=1","S","Function unknown","PREDICTED: peamaclein [Citrus sinensis] "]
["c32207.graph_c0","--","--","--","--","--","--","--","--","--","--","Chaperonin ClpA/B [Corchorus capsularis]"]
["c39339.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K20115|0|gra:105773645|K20115 [pyruvate, phosphate dikinase]-phosphate phosphotransferase / [pyruvate, phosphate dikinase] kinase [EC:2.7.4.27 2.7.11.32] | (RefSeq) pyruvate, phosphate dikinase regulatory protein 1, chloroplastic","--","--","Kinase/pyrophosphorylase","Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDRP1 PE=2 SV=2","S","Function unknown","PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic isoform X1 [Gossypium raimondii] "]
["c17632.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","[P]","Inorganic ion transport and metabolism ","--","Metallothionein-like protein type 2 OS=Malus domestica OX=3750 GN=MT1 PE=3 SV=1","S","Function unknown","PREDICTED: metallothionein-like protein 2 [Gossypium hirsutum]"]
["c40061.graph_c0","--","--","Biological Process: dephosphorylation (GO:0016311);; Molecular Function: phosphatase activity (GO:0016791);; ","K13248|3.01812e-171|gra:105770280|K13248 pyridoxal phosphate phosphatase PHOSPHO2 [EC:3.1.3.74] | (RefSeq) inorganic pyrophosphatase 2-like","[R]","General function prediction only ","Putative Phosphatase;; haloacid dehalogenase-like hydrolase","Inorganic pyrophosphatase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g17710 PE=2 SV=1","S","Function unknown","PREDICTED: inorganic pyrophosphatase 2-like [Gossypium arboreum] "]
["c39165.graph_c0","--","--","--","--","--","--","Senescence-associated protein","Senescence/dehydration-associated protein At4g35985, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P85 PE=2 SV=1","S","Function unknown","senescence/dehydration-associated protein At4g35985, chloroplastic-like [Herrania umbratica]"]
["c79749.graph_c0","--","--","Molecular Function: solute:proton antiporter activity (GO:0015299);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","[P]","Inorganic ion transport and metabolism ","--","Cation/H(+) antiporter 18 OS=Arabidopsis thaliana OX=3702 GN=CHX18 PE=2 SV=1","P","Inorganic ion transport and metabolism","Cation proton exchanger, putative [Theobroma cacao]"]
["c73827.graph_c0","--","--","Molecular Function: monovalent cation:proton antiporter activity (GO:0005451);; Biological Process: potassium ion transport (GO:0006813);; Biological Process: sodium ion transport (GO:0006814);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","[P]","Inorganic ion transport and metabolism ","--","Cation/H(+) antiporter 15 OS=Arabidopsis thaliana OX=3702 GN=CHX15 PE=2 SV=1","P","Inorganic ion transport and metabolism","cation/H(+) antiporter 15-like [Durio zibethinus]"]
["c48915.graph_c2","--","--","--","--","[R]","General function prediction only ","LisH","Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2","S","Function unknown","PREDICTED: transcriptional corepressor LEUNIG-like isoform X4 [Gossypium hirsutum]"]
["c58316.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","[DZ]","--","Translationally controlled tumour protein","Translationally-controlled tumor protein homolog OS=Zea mays OX=4577 GN=TCTP PE=2 SV=1","S","Function unknown","translationally controlled tumor-associated [Rhizopus microsporus ATCC 52813] "]
["c7953.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","K03453|2.84329e-33|gra:105781327|K03453 bile acid:Na+ symporter, BASS family | (RefSeq) sodium/pyruvate cotransporter BASS2, chloroplastic-like","--","--","--","Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS2 PE=2 SV=1","S","Function unknown","PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like isoform X2 [Gossypium hirsutum]"]
["c64960.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","[S]","Function unknown ","--","Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=PUB42 PE=3 SV=1","S","Function unknown","hypothetical protein GOBAR_AA38655 [Gossypium barbadense]"]
["c58751.graph_c0","[V]","Defense mechanisms ","Molecular Function: peroxiredoxin activity (GO:0051920);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K03386|1.49759e-86|cre:CHLREDRAFT_155464|K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] | (RefSeq) PRX2; 2-cys peroxiredoxin","[O]","Posttranslational modification, protein turnover, chaperones ","AhpC/TSA family;; Redoxin;; C-terminal domain of 1-Cys peroxiredoxin","Putative peroxiredoxin ycf42 OS=Porphyra purpurea OX=2787 GN=ycf42 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","peroxiredoxin [Saprolegnia diclina VS20] "]
["c37814.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Troponin","--","Z","Cytoskeleton","--"]
["c52945.graph_c0","--","--","Cellular Component: 1,3-beta-D-glucan synthase complex (GO:0000148);; Molecular Function: 1,3-beta-D-glucan synthase activity (GO:0003843);; Biological Process: (1->3)-beta-D-glucan biosynthetic process (GO:0006075);; Cellular Component: integral component of membrane (GO:0016021);; ","K11000|4.31236e-18|gra:105780243|K11000 callose synthase [EC:2.4.1.-] | (RefSeq) callose synthase 7-like","[M]","Cell wall/membrane/envelope biogenesis ","--","Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3","S","Function unknown","callose synthase 7-like [Durio zibethinus] "]
["c37269.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal large subunit assembly (GO:0000027);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Molecular Function: 5S rRNA binding (GO:0008097);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02932|7.91967e-100|spen:107023408|K02932 large subunit ribosomal protein L5e | (RefSeq) 60S ribosomal protein L5-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal large subunit proteins 60S L5, and 50S L18;; Ribosomal L18 C-terminal region","60S ribosomal protein L5 OS=Helianthus annuus OX=4232 GN=RPL5A PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","RecName: Full=60S ribosomal protein L5 "]
["c49575.graph_c0","[C]","Energy production and conversion ","--","K00234|0|gra:105763285|K00234 succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] | (RefSeq) succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial","[C]","Energy production and conversion ","FAD binding domain;; Fumarate reductase flavoprotein C-term","Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH1-1 PE=1 SV=1","C","Energy production and conversion","succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [Durio zibethinus]"]
["c38656.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ziziphus jujuba]"]
["c75931.graph_c0","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: peptidase activity (GO:0008233);; ","--","--","--","--","--","S","Function unknown","PREDICTED: non-specific lipid-transfer protein 3-like [Pyrus x bretschneideri]"]
["c45423.graph_c0","--","--","Biological Process: fatty acid metabolic process (GO:0006631);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: chloroplast membrane (GO:0031969);; ","--","--","--","Protein CHAPERONE-LIKE PROTEIN OF POR1-like","--","S","Function unknown","uncharacterized protein LOC111277128 [Durio zibethinus]"]
["c34890.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; PPR repeat family;; Pentatricopeptide repeat domain;; PPR repeat;; PPR repeat;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g10910 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like [Gossypium hirsutum] "]
["c18672.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; ","K02968|5.6246e-81|fve:101300212|K02968 small subunit ribosomal protein S20 | (RefSeq) 30S ribosomal protein S20, chloroplastic","--","--","Ribosomal protein S20","30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","PREDICTED: 30S ribosomal protein S20, chloroplastic [Fragaria vesca subsp. vesca]"]
["c37358.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Serine aminopeptidase, S33","--","S","Function unknown","uncharacterized protein LOC111318263 [Durio zibethinus]"]
["c19605.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","EXS family","--","T","Signal transduction mechanisms","SPX and EXS domain-containing protein 1 isoform X1 [Herrania umbratica] "]
["c3424.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: YDG domain-containing protein At5g47160-like [Gossypium hirsutum] "]
["c57553.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K13420|1.62339e-32|gra:105786670|K13420 LRR receptor-like serine/threonine-protein kinase FLS2 [EC:2.7.11.1] | (RefSeq) putative receptor-like protein kinase At3g47110","[T]","Signal transduction mechanisms ","--","Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana OX=3702 GN=At2g23950 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA12358 [Gossypium barbadense]"]
["c38855.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108488587 [Gossypium arboreum]"]
["c32673.graph_c0","--","--","Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: RNA biosynthetic process (GO:0032774);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107887214 [Gossypium hirsutum] "]
["c60523.graph_c0","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","K07195|2.7016e-37|gra:105769791|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70A1-like","--","--","Exo70 exocyst complex subunit","--","S","Function unknown","hypothetical protein GOBAR_DD20761 [Gossypium barbadense]"]
["c88167.graph_c0","[C]","Energy production and conversion ","Molecular Function: ATP binding (GO:0005524);; Biological Process: metabolic process (GO:0008152);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912);; Molecular Function: cofactor binding (GO:0048037);; ","K01648|2.46909e-38|sind:105178887|K01648 ATP citrate (pro-S)-lyase [EC:2.3.3.8] | (RefSeq) ATP-citrate synthase beta chain protein 2","[C]","Energy production and conversion ","Citrate synthase, C-terminal domain","ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana OX=3702 GN=ACLB-1 PE=2 SV=1","C","Energy production and conversion","putative ATP-citrate synthase subunit 1 (ATP-citrate (pro-S-)-lyase 1) [Conidiobolus coronatus NRRL 28638]"]
["c47003.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Cellular Component: endosome (GO:0005768);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Signal peptide peptidase;; PA domain;; Signal peptide peptidase","Signal peptide peptidase-like 2 OS=Arabidopsis thaliana OX=3702 GN=SPPL2 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: signal peptide peptidase-like 2 isoform X2 [Gossypium hirsutum]"]
["c51437.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","Leucine-rich repeat, cysteine-containing subtype [Corchorus capsularis]"]
["c90043.graph_c0","--","--","--","K14572|2.37286e-25|vvi:100244657|K14572 midasin | (RefSeq) midasin","[R]","General function prediction only ","--","Midasin OS=Arabidopsis thaliana OX=3702 GN=MDN1 PE=1 SV=1","S","Function unknown","PREDICTED: midasin [Juglans regia]"]
["c29425.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA14657 [Gossypium barbadense]"]
["c40203.graph_c0","--","--","Biological Process: cytoskeleton organization (GO:0007010);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: xylem and phloem pattern formation (GO:0010051);; ","--","--","--","Microtubule-associated protein 70","Microtubule-associated protein 70-5 OS=Arabidopsis thaliana OX=3702 GN=MAP70.5 PE=1 SV=1","S","Function unknown","PREDICTED: microtubule-associated protein 70-5-like [Gossypium arboreum]"]
["c27218.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Domain of unknown function (DUF588);; Domain of unknown function (DUF588)","CASP-like protein XL3 OS=Gossypium hirsutum OX=3635 GN=XL3 PE=2 SV=1","S","Function unknown","PREDICTED: CASP-like protein XL3 [Gossypium hirsutum]"]
["c81513.graph_c0","--","--","--","--","--","--","--","Formin-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=FH5 PE=2 SV=2","--","--","PREDICTED: LOW QUALITY PROTEIN: formin-like protein 18 [Cicer arietinum]"]
["c46867.graph_c1","[X]","Mobilome: prophages, transposons","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; Reverse transcriptase-like;; zinc-binding in reverse transcriptase;; Oxysterol-binding protein;; Oxysterol-binding protein","Oxysterol-binding protein-related protein 3C OS=Arabidopsis thaliana OX=3702 GN=ORP3C PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107959736 [Gossypium hirsutum]"]
["c85892.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Uncharacterized protein TCM_004963 [Theobroma cacao]"]
["c30163.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: mannose-6-phosphate 6-reductase activity (GO:0050088);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00011|3.0505e-60|gra:105779604|K00011 aldehyde reductase [EC:1.1.1.21] | (RefSeq) NADP-dependent D-sorbitol-6-phosphate dehydrogenase-like","[R]","General function prediction only ","Aldo/keto reductase family","NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica OX=3750 GN=S6PDH PE=2 SV=1","S","Function unknown","PREDICTED: NADP-dependent D-sorbitol-6-phosphate dehydrogenase-like [Gossypium raimondii]"]
["c45646.graph_c1","--","--","--","--","--","--","Transcriptional repressor, ovate","Transcription repressor OFP16 OS=Arabidopsis thaliana OX=3702 GN=OFP16 PE=2 SV=1","S","Function unknown","PREDICTED: transcription repressor OFP12-like [Gossypium arboreum]"]
["c21241.graph_c0","--","--","--","--","--","--","BURP domain","--","S","Function unknown","BURP domain-containing protein BNM2A-like isoform X2 [Herrania umbratica] "]
["c39499.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: ligase activity (GO:0016874);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana OX=3702 GN=PRT6 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA34699 [Gossypium barbadense]"]
["c48078.graph_c0","--","--","--","--","[S]","Function unknown ","Uncharacterised ACR, YagE family COG1723","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108450587 isoform X2 [Gossypium arboreum]"]
["c39077.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108452403 [Gossypium arboreum]"]
["c86004.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; ","K08908|3.90043e-18|tcc:TCM_008821|K08908 light-harvesting complex I chlorophyll a/b binding protein 2 | (RefSeq) Chlorophyll a-b binding protein 7, chloroplastic","--","--","--","Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1","S","Function unknown","chlorophyll a-b binding protein 7, chloroplastic [Carica papaya]"]
["c32589.graph_c0","--","--","--","--","--","--","Cotton fibre expressed protein","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105767965 [Gossypium raimondii] "]
["c34637.graph_c0","[R]","General function prediction only ","Molecular Function: phospholipase activity (GO:0004620);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: membrane (GO:0016020);; Biological Process: lipid catabolic process (GO:0016042);; Molecular Function: acylglycerol lipase activity (GO:0047372);; ","--","[I]","Lipid transport and metabolism ","Patatin-like phospholipase","Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1","S","Function unknown","PREDICTED: patatin-like protein 2 [Gossypium arboreum]"]
["c7275.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein B456_011G195300 [Gossypium raimondii]"]
["c23729.graph_c0","--","--","--","--","--","--","ZF-HD protein dimerisation region","Zinc-finger homeodomain protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZHD5 PE=1 SV=1","S","Function unknown","PREDICTED: zinc-finger homeodomain protein 2-like [Gossypium raimondii] "]
["c94180.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","--","--","PREDICTED: uncharacterized protein LOC108846296 isoform X2 [Raphanus sativus]"]
["c88036.graph_c0","--","--","--","K02183|1.21526e-07|gsl:Gasu_46430|K02183 calmodulin | (RefSeq) calmodulin isoform 1","[Z]","Cytoskeleton ","EF hand;; EF-hand domain;; EF-hand domain pair;; EF-hand domain pair","Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CML2 PE=3 SV=2","Z","Cytoskeleton","centrin 2 [Plasmopara halstedii]"]
["c48544.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","--","K01869|7.59733e-140|tcc:TCM_030285|K01869 leucyl-tRNA synthetase [EC:6.1.1.4] | (RefSeq) TRNA synthetase class I (I, L, M and V) family protein isoform 1","[J]","Translation, ribosomal structure and biogenesis ","tRNA synthetases class I (I, L, M and V);; tRNA synthetases class I (M)","Leucine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=EMB2369 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","leucine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Durio zibethinus]"]
["c48332.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to stress (GO:0006950);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","U-box domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=PUB35 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: U-box domain-containing protein 52-like isoform X1 [Gossypium raimondii] "]
["c33422.graph_c0","--","--","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: myosin complex (GO:0016459);; ","K10357|3.23978e-36|tcc:TCM_020471|K10357 myosin V | (RefSeq) Myosin XI B isoform 1","[Z]","Cytoskeleton ","DIL domain","Myosin-14 OS=Arabidopsis thaliana OX=3702 GN=XI-H PE=3 SV=1","Z","Cytoskeleton","Myosin XI B isoform 1 [Theobroma cacao]"]
["c30417.graph_c2","[I]","Lipid transport and metabolism ","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13076|1.60536e-64|gra:105802754|K13076 Delta8-fatty-acid desaturase [EC:1.14.19.4] | (RefSeq) delta(8)-fatty-acid desaturase 2","[I]","Lipid transport and metabolism ","Fatty acid desaturase","Delta(8)-fatty-acid desaturase OS=Helianthus annuus OX=4232 GN=sld1 PE=1 SV=1","I","Lipid transport and metabolism","delta(8)-fatty-acid desaturase 2-like [Cucurbita pepo subsp. pepo]"]
["c49444.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: phosphatidylinositol binding (GO:0035091);; ","K17925|0|tcc:TCM_006977|K17925 sorting nexin-13 | (RefSeq) Phox-associated domain,Phox-like,Sorting nexin isoform 2","[ZUD]","--","PX domain;; PXA domain;; Sorting nexin C terminal;; Sorting nexin C terminal","--","S","Function unknown","uncharacterized protein LOC111296480 isoform X1 [Durio zibethinus]"]
["c32765.graph_c0","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","--","Transferase family","Malonyl-CoA:anthocyanidin 5-O-glucoside-6&apos;&apos;-O-malonyltransferase OS=Arabidopsis thaliana OX=3702 GN=5MAT PE=1 SV=1","S","Function unknown","phenolic glucoside malonyltransferase 1-like [Durio zibethinus]"]
["c26268.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: transcription coactivator activity (GO:0003713);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","gag-polypeptide of LTR copia-type","--","K","Transcription","uncharacterized protein LOC110413599 [Herrania umbratica]"]
["c47814.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","--","Protein indeterminate-domain 1 OS=Arabidopsis thaliana OX=3702 GN=IDD1 PE=1 SV=1","S","Function unknown","PREDICTED: protein indeterminate-domain 7-like [Gossypium arboreum]"]
["c37967.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: metal ion binding (GO:0046872);; ","K02183|2.23028e-43|ppp:PHYPADRAFT_210000|K02183 calmodulin | (RefSeq) hypothetical protein","[T]","Signal transduction mechanisms ","EF-hand domain pair;; EF hand;; EF-hand domain;; EF-hand domain pair;; EF hand;; EF-hand domain;; Cytoskeletal-regulatory complex EF hand;; Secreted protein acidic and rich in cysteine Ca binding region;; EF-hand domain","Calmodulin OS=Macrocystis pyrifera OX=35122 PE=2 SV=3","DTZ","--","calmodulin [Rhizoclosmatium globosum]"]
["c44251.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain;; Protein tyrosine kinase;; Protein kinase domain;; Protein kinase domain;; Protein tyrosine kinase","Probable serine/threonine-protein kinase PBL20 OS=Arabidopsis thaliana OX=3702 GN=PBL20 PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA37175 [Gossypium barbadense]"]
["c22487.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02949|9.89301e-66|pda:103714972|K02949 small subunit ribosomal protein S11e | (RefSeq) 40S ribosomal protein S11-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal_S17 N-terminal;; Ribosomal protein S17","40S ribosomal protein S11-2 OS=Arabidopsis thaliana OX=3702 GN=RPS11B PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein CONCODRAFT_41204 [Conidiobolus coronatus NRRL 28638]"]
["c84847.graph_c0","--","--","--","--","[L]","Replication, recombination and repair ","hAT family C-terminal dimerisation region","Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2","--","--","PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Gossypium hirsutum]"]
["c91888.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c7823.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K08494|1.38611e-16|jcu:105636657|K08494 novel plant SNARE | (RefSeq) novel plant SNARE 11","--","--","--","Novel plant SNARE 11 OS=Arabidopsis thaliana OX=3702 GN=NPSN11 PE=1 SV=2","S","Function unknown","PREDICTED: novel plant SNARE 11-like [Gossypium hirsutum]"]
["c41529.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","short chain dehydrogenase;; Enoyl-(Acyl carrier protein) reductase;; KR domain;; NAD dependent epimerase/dehydratase family","(+)-neomenthol dehydrogenase OS=Capsicum annuum OX=4072 GN=MNR1 PE=1 SV=1","S","Function unknown","PREDICTED: carbonyl reductase [NADPH] 1-like [Gossypium hirsutum]"]
["c84620.graph_c0","--","--","--","K09338|3.79474e-14|rcu:8274823|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HDG2","--","--","--","Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana OX=3702 GN=HDG2 PE=1 SV=1","K","Transcription","homeobox-leucine zipper protein HDG2-like [Cucurbita maxima]"]
["c35197.graph_c0","[IR]","Lipid transport and metabolism ;; General function prediction only ","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana OX=3702 GN=At5g03610 PE=2 SV=1","S","Function unknown","GDSL esterase/lipase At5g03610 [Herrania umbratica]"]
["c22813.graph_c0","--","--","--","--","[N]","Cell motility ","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c63128.graph_c0","--","--","Molecular Function: SNARE binding (GO:0000149);; Molecular Function: SNAP receptor activity (GO:0005484);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: exocytosis (GO:0006887);; Biological Process: vesicle fusion (GO:0006906);; Cellular Component: endomembrane system (GO:0012505);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: SNARE complex (GO:0031201);; Biological Process: vesicle docking (GO:0048278);; ","K08486|4.56206e-20|gra:105762476|K08486 syntaxin 1B/2/3 | (RefSeq) syntaxin-124-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Syntaxin-124 OS=Arabidopsis thaliana OX=3702 GN=SYP124 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: syntaxin-124-like [Gossypium hirsutum] "]
["c42324.graph_c0","--","--","--","--","--","--","--","50S ribosomal protein L16, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana OX=308872 GN=rpl16 PE=3 SV=1","--","--","--"]
["c34424.graph_c0","--","--","--","--","[L]","Replication, recombination and repair ","--","--","S","Function unknown","PREDICTED: putative nuclease HARBI1 isoform X1 [Gossypium raimondii] "]
["c16201.graph_c0","--","--","--","--","--","--","Plant invertase/pectin methylesterase inhibitor","--","--","--","hypothetical protein GOBAR_AA04680 [Gossypium barbadense]"]
["c63720.graph_c0","--","--","--","K14432|2.09591e-19|tcc:TCM_033824|K14432 ABA responsive element binding factor | (RefSeq) Abscisic acid responsive elements-binding factor 2 isoform 1","--","--","--","--","K","Transcription","Abscisic acid responsive elements-binding factor 2 isoform 1 [Theobroma cacao] "]
["c45505.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Flavonoid 3&apos;,5&apos;-hydroxylase OS=Solanum melongena OX=4111 GN=CYP75A2 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Gossypium raimondii] "]
["c862.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; ","--","[I]","Lipid transport and metabolism ","Thiolase, N-terminal domain","--","I","Lipid transport and metabolism","hypothetical protein GUITHDRAFT_159886 [Guillardia theta CCMP2712] "]
["c46935.graph_c0","[R]","General function prediction only ","Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; ","--","[T]","Signal transduction mechanisms ","NB-ARC domain;; Leucine Rich repeats (2 copies);; Leucine rich repeat","Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2","S","Function unknown","PREDICTED: putative disease resistance protein RGA1 [Gossypium hirsutum]"]
["c26920.graph_c1","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Metal transporter Nramp5 OS=Oryza sativa subsp. japonica OX=39947 GN=NRAMP5 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: metal transporter Nramp5-like [Gossypium hirsutum]"]
["c26396.graph_c0","--","--","Molecular Function: mechanically-gated ion channel activity (GO:0008381);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ion transmembrane transport (GO:0034220);; ","--","[S]","Function unknown ","--","Piezo-type mechanosensitive ion channel homolog OS=Arabidopsis thaliana OX=3702 GN=At2g48060/At2g48040/At2g48050 PE=2 SV=1","S","Function unknown","Piezo2 [Gossypium arboreum] "]
["c39858.graph_c0","--","--","--","--","--","--","--","F-box protein SKIP27 OS=Arabidopsis thaliana OX=3702 GN=SKIP27 PE=1 SV=2","S","Function unknown","F-box protein SKIP27-like [Durio zibethinus] "]
["c44734.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1","K","Transcription","Duplicated homeodomain-like superfamily protein [Theobroma cacao]"]
["c45401.graph_c1","--","--","--","--","[TZ]","--","--","Formin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=FH5 PE=2 SV=2","S","Function unknown","PREDICTED: formin-like protein 3 [Gossypium raimondii]"]
["c41945.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: phospholipase D activity (GO:0004630);; Molecular Function: N-acylphosphatidylethanolamine-specific phospholipase D activity (GO:0070290);; ","K01115|0|gra:105802630|K01115 phospholipase D1/2 [EC:3.1.4.4] | (RefSeq) phospholipase D gamma 1-like","[I]","Lipid transport and metabolism ","Phospholipase D C terminal;; C2 domain;; Phospholipase D Active site motif;; PLD-like domain","Phospholipase D beta 1 OS=Arabidopsis thaliana OX=3702 GN=PLDBETA1 PE=1 SV=4","I","Lipid transport and metabolism","PREDICTED: phospholipase D gamma 1-like isoform X2 [Gossypium hirsutum]"]
["c26751.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108487210 isoform X1 [Gossypium arboreum]"]
["c94041.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: cinnamyl-alcohol dehydrogenase activity (GO:0045551);; Molecular Function: mannitol dehydrogenase activity (GO:0046029);; Molecular Function: sinapyl alcohol dehydrogenase activity (GO:0052747);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00083|1.82423e-40|fve:101293136|K00083 cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] | (RefSeq) probable mannitol dehydrogenase","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Probable mannitol dehydrogenase OS=Fragaria ananassa OX=3747 GN=CAD PE=2 SV=1","C","Energy production and conversion","PREDICTED: probable mannitol dehydrogenase [Fragaria vesca subsp. vesca]"]
["c39928.graph_c0","[S]","Function unknown ","Molecular Function: carbonate dehydratase activity (GO:0004089);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: carbon utilization (GO:0015976);; ","K01673|1.78537e-92|gra:105769543|K01673 carbonic anhydrase [EC:4.2.1.1] | (RefSeq) beta carbonic anhydrase 5, chloroplastic-like","[P]","Inorganic ion transport and metabolism ","Carbonic anhydrase;; Carbonic anhydrase","Beta carbonic anhydrase 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BCA5 PE=2 SV=1","P","Inorganic ion transport and metabolism","beta carbonic anhydrase 5, chloroplastic-like isoform X3 [Durio zibethinus]"]
["c50773.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107958521 [Gossypium hirsutum]"]
["c79454.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Cellular Component: membrane (GO:0016020);; ","K00511|5.40898e-15|tcc:TCM_034641|K00511 squalene monooxygenase [EC:1.14.14.17] | (RefSeq) Squalene monooxygenase isoform 1","--","--","--","--","--","--","squalene monooxygenase-like [Durio zibethinus]"]
["c83677.graph_c0","--","--","--","--","[K]","Transcription ","--","--","K","Transcription","--"]
["c33101.graph_c0","--","--","--","--","--","--","Arabidopsis protein of unknown function","--","S","Function unknown","hypothetical protein COLO4_22517 [Corchorus olitorius]"]
["c39052.graph_c1","--","--","Biological Process: Group I intron splicing (GO:0000372);; Biological Process: Group II intron splicing (GO:0000373);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[L]","Replication, recombination and repair ","CRS1 / YhbY (CRM) domain","CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CFM2 PE=1 SV=1","S","Function unknown","PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Gossypium raimondii] "]
["c34234.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Protein SELF-PRUNING OS=Solanum lycopersicum OX=4081 GN=SP PE=2 SV=1","S","Function unknown","protein SELF-PRUNING-like [Durio zibethinus]"]
["c38167.graph_c0","[T]","Signal transduction mechanisms ","Biological Process: cytokinesis by cell plate formation (GO:0000911);; Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: phragmoplast (GO:0009524);; Biological Process: embryo sac cellularization (GO:0009558);; ","K06228|0|tcc:TCM_043371|K06228 fused [EC:2.7.11.1] | (RefSeq) ATP binding protein, putative isoform 1","--","--","Protein kinase domain;; Protein tyrosine kinase;; HEAT repeats;; HEAT-like repeat;; Armadillo/beta-catenin-like repeat;; HEAT repeat;; Kinase-like","Serine/threonine-protein kinase TIO OS=Arabidopsis thaliana OX=3702 GN=TIO PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase TIO isoform X4 [Gossypium arboreum]"]
["c23186.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","K14944|4.28135e-22|gra:105774061|K14944 RNA-binding protein Nova | (RefSeq) RNA-binding protein Nova-2-like","[AR]","--","--","Protein BTR1 OS=Arabidopsis thaliana OX=3702 GN=BTR1 PE=1 SV=1","S","Function unknown","PREDICTED: protein BTR1-like isoform X2 [Gossypium arboreum] "]
["c36524.graph_c0","--","--","Molecular Function: ferroxidase activity (GO:0004322);; Cellular Component: cell (GO:0005623);; Biological Process: iron ion transport (GO:0006826);; Biological Process: cellular iron ion homeostasis (GO:0006879);; Molecular Function: ferric iron binding (GO:0008199);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00522|3.77785e-64|gra:105771254|K00522 ferritin heavy chain [EC:1.16.3.2] | (RefSeq) ferritin-3, chloroplastic-like","[P]","Inorganic ion transport and metabolism ","Ferritin-like domain","Ferritin-3, chloroplastic OS=Glycine max OX=3847 PE=2 SV=1","P","Inorganic ion transport and metabolism","ferritin-3, chloroplastic-like [Durio zibethinus]"]
["c5956.graph_c0","--","--","Molecular Function: Rab GDP-dissociation inhibitor activity (GO:0005093);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: protein transport (GO:0015031);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: regulation of catalytic activity (GO:0050790);; Biological Process: oxidation-reduction process (GO:0055114);; ","K17255|1.36322e-40|fve:101307719|K17255 Rab GDP dissociation inhibitor | (RefSeq) guanosine nucleotide diphosphate dissociation inhibitor 2","[O]","Posttranslational modification, protein turnover, chaperones ","GDP dissociation inhibitor","Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 OS=Arabidopsis thaliana OX=3702 GN=At5g09550 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","rab GDP dissociation inhibitor, partial [Micromeria varia] "]
["c4893.graph_c0","--","--","--","--","--","--","--","--","L","Replication, recombination and repair","hypothetical protein VITISV_006313 [Vitis vinifera]"]
["c38364.graph_c0","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: ATPase-coupled organic phosphonate transmembrane transporter activity (GO:0015416);; Biological Process: organic phosphonate transport (GO:0015716);; Biological Process: organophosphate ester transport (GO:0015748);; ","K12608|2.19079e-61|pper:PRUPE_ppa008695mg|K12608 CCR4-NOT complex subunit CAF16 | (RefSeq) hypothetical protein","[RK]","--","ABC transporter","ABC transporter I family member 20 OS=Arabidopsis thaliana OX=3702 GN=ABCI20 PE=2 SV=1","S","Function unknown","hypothetical protein B456_007G376200 [Gossypium raimondii]"]
["c14110.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: porphobilinogen synthase activity (GO:0004655);; Cellular Component: cytosol (GO:0005829);; Biological Process: protoporphyrinogen IX biosynthetic process (GO:0006782);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast (GO:0009507);; Biological Process: chlorophyll biosynthetic process (GO:0015995);; ","K01698|3.10356e-83|fve:101303675|K01698 porphobilinogen synthase [EC:4.2.1.24] | (RefSeq) delta-aminolevulinic acid dehydratase, chloroplastic","[H]","Coenzyme transport and metabolism ","Delta-aminolevulinic acid dehydratase","Delta-aminolevulinic acid dehydratase, chloroplastic (Fragment) OS=Pisum sativum OX=3888 GN=HEMB PE=1 SV=1","H","Coenzyme transport and metabolism","PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Fragaria vesca subsp. vesca]"]
["c88225.graph_c0","[G]","Carbohydrate transport and metabolism ","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Major Facilitator Superfamily;; PUCC protein","--","U","Intracellular trafficking, secretion, and vesicular transport","MFS general substrate transporter [Gonapodya prolifera JEL478]"]
["c86020.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: glycopeptide alpha-N-acetylgalactosaminidase activity (GO:0033926);; ","--","--","--","Alkaline and neutral invertase","Probable alkaline/neutral invertase B OS=Arabidopsis thaliana OX=3702 GN=INVB PE=1 SV=1","S","Function unknown","PREDICTED: alkaline/neutral invertase CINV2-like [Gossypium arboreum]"]
["c7310.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107956322 [Gossypium hirsutum]"]
["c85681.graph_c0","--","--","Cellular Component: cell part (GO:0044464);; Biological Process: single-organism cellular process (GO:0044763);; ","--","[Z]","Cytoskeleton ","Calponin homology (CH) domain","--","Z","Cytoskeleton","hypothetical protein M427DRAFT_137190 [Gonapodya prolifera JEL478]"]
["c22055.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein At5g65660-like [Gossypium raimondii] "]
["c6873.graph_c1","--","--","Molecular Function: inorganic anion exchanger activity (GO:0005452);; Biological Process: inorganic anion transport (GO:0015698);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[P]","Inorganic ion transport and metabolism ","HCO3- transporter family","Probable boron transporter 6 OS=Arabidopsis thaliana OX=3702 GN=BOR6 PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein JCGZ_07200 [Jatropha curcas]"]
["c38878.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111303319 isoform X1 [Durio zibethinus]"]
["c22022.graph_c0","[K]","Transcription ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana OX=3702 GN=SRF5 PE=2 SV=1","S","Function unknown","PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 5 isoform X2 [Gossypium raimondii] "]
["c82811.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|1.1164e-41|gra:105764059|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor MYB59-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 SV=1","K","Transcription","PREDICTED: transcription factor MYB59 [Gossypium hirsutum] "]
["c21181.graph_c0","--","--","Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00454|0|tcc:TCM_040462|K00454 lipoxygenase [EC:1.13.11.12] | (RefSeq) Lipoxygenase isoform 1","--","--","Lipoxygenase;; PLAT/LH2 domain","Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX2.1 PE=1 SV=1","S","Function unknown","linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Herrania umbratica]"]
["c243.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: ethylene-responsive transcription factor ERF054-like [Gossypium raimondii] "]
["c33102.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: cleft lip and palate transmembrane protein 1 homolog isoform X4 [Gossypium raimondii]"]
["c53218.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA38092 [Gossypium barbadense]"]
["c34102.graph_c3","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: primary amine oxidase activity (GO:0008131);; Biological Process: amine metabolic process (GO:0009308);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: quinone binding (GO:0048038);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00276|4.26436e-157|gra:105788633|K00276 primary-amine oxidase [EC:1.4.3.21] | (RefSeq) copper amine oxidase 1-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Copper amine oxidase, enzyme domain;; Copper amine oxidase, N3 domain","Primary amine oxidase OS=Pisum sativum OX=3888 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein B456_003G116000 [Gossypium raimondii]"]
["c90994.graph_c0","--","--","--","--","[W]","Extracellular structures ","PDZ domain (Also known as DHR or GLGF)","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c45727.graph_c1","--","--","--","--","[T]","Signal transduction mechanisms ","BAG domain","BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana OX=3702 GN=BAG1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","BAG family molecular chaperone regulator 1-like [Durio zibethinus]"]
["c24621.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; ","K01653|6.669e-13|tcc:TCM_047047|K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6] | (RefSeq) ACT domain-containing small subunit of acetolactate synthase protein","--","--","--","--","--","--","ACT domain-containing small subunit of acetolactate synthase protein [Theobroma cacao]"]
["c45875.graph_c1","--","--","--","K03126|6.32982e-12|gra:105776895|K03126 transcription initiation factor TFIID subunit 12 | (RefSeq) transcription initiation factor TFIID subunit 12b-like","--","--","--","--","--","--","PREDICTED: transcription initiation factor TFIID subunit 12b-like isoform X1 [Gossypium raimondii] "]
["c45783.graph_c0","--","--","Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107946457 isoform X1 [Gossypium hirsutum]"]
["c83731.graph_c0","--","--","Molecular Function: protein-lysine N-methyltransferase activity (GO:0016279);; Biological Process: peptidyl-lysine monomethylation (GO:0018026);; ","K00592|1.24472e-07|pda:103714847|K00592 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase [EC:2.1.1.127] | (RefSeq) fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic","[R]","General function prediction only ","--","[Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LSMT-L PE=1 SV=1","S","Function unknown","hypothetical protein ST47_g5432 [Ascochyta rabiei]"]
["c94720.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein IQ06DRAFT_294135 [Stagonospora sp. SRC1lsM3a]"]
["c34175.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA12179 [Gossypium barbadense]"]
["c16812.graph_c0","--","--","--","--","--","--","--","Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRIN2 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107903702 isoform X1 [Gossypium hirsutum]"]
["c86605.graph_c0","--","--","Molecular Function: electron carrier activity (GO:0009055);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105781989 [Gossypium raimondii] "]
["c45199.graph_c4","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: helicase activity (GO:0004386);; ","--","--","--","Myb-like DNA-binding domain","Chromatin modification-related protein EAF1 B OS=Arabidopsis thaliana OX=3702 GN=EAF1B PE=1 SV=1","S","Function unknown","PREDICTED: chromatin modification-related protein EAF1 B-like [Gossypium arboreum]"]
["c47696.graph_c0","--","--","Molecular Function: protein domain specific binding (GO:0019904);; ","K06630|8.08235e-151|gra:105769531|K06630 14-3-3 protein epsilon | (RefSeq) 14-3-3L; 14-3-3 protein 7","[O]","Posttranslational modification, protein turnover, chaperones ","14-3-3 protein","14-3-3 protein 7 OS=Solanum lycopersicum OX=4081 GN=TFT7 PE=2 SV=2","T","Signal transduction mechanisms","14-3-3 protein 7-like [Gossypium hirsutum] "]
["c10007.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1677)","--","S","Function unknown","uncharacterized protein LOC110411614 [Herrania umbratica]"]
["c18333.graph_c0","--","--","--","--","--","--","--","GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana OX=3702 GN=At3g26430 PE=2 SV=1","--","--","GDSL esterase/lipase At5g14450-like [Lactuca sativa]"]
["c34149.graph_c0","--","--","--","--","--","--","LURP-one-related;; LURP-one-related","Protein LURP-one-related 8 OS=Arabidopsis thaliana OX=3702 GN=At2g38640 PE=2 SV=1","S","Function unknown","PREDICTED: protein LURP-one-related 8-like [Gossypium hirsutum]"]
["c70649.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","K18134|3.44146e-49|gra:105781201|K18134 protein O-GlcNAc transferase [EC:2.4.1.255] | (RefSeq) uncharacterized LOC105781201","[S]","Function unknown ","Protein of unknown function (DUF563)","--","S","Function unknown","hypothetical protein GOBAR_AA03106 [Gossypium barbadense]"]
["c39657.graph_c0","--","--","--","K18730|1.97518e-52|gra:105802388|K18730 PERQ amino acid-rich with GYF domain-containing protein | (RefSeq) uncharacterized LOC105802388","[R]","General function prediction only ","--","--","S","Function unknown","hypothetical protein GOBAR_AA20516 [Gossypium barbadense]"]
["c30663.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1","V","Defense mechanisms","PREDICTED: putative ABC transporter C family member 15 [Theobroma cacao] "]
["c40066.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: protein catabolic process (GO:0030163);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase NANA, chloroplast OS=Arabidopsis thaliana OX=3702 GN=NANA PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","LOW QUALITY PROTEIN: aspartyl protease family protein 2 [Herrania umbratica]"]
["c45199.graph_c6","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: helicase activity (GO:0004386);; ","--","--","--","--","Chromatin modification-related protein EAF1 A OS=Arabidopsis thaliana OX=3702 GN=EAF1A PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD35798 [Gossypium barbadense]"]
["c49101.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);; Cellular Component: nucleus (GO:0005634);; Biological Process: protein ADP-ribosylation (GO:0006471);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: NAD binding (GO:0051287);; ","K10798|0|gra:105803182|K10798 poly [ADP-ribose] polymerase [EC:2.4.2.30] | (RefSeq) poly [ADP-ribose] polymerase 1","[KLO]","--","Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region;; Poly(ADP-ribose) polymerase, regulatory domain;; Poly(ADP-ribose) polymerase catalytic domain;; PADR1 (NUC008) domain;; WGR domain;; BRCA1 C Terminus (BRCT) domain;; BRCT domain, a BRCA1 C-terminus domain;; Poly(ADP-ribose) polymerase catalytic domain","Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PARP1 PE=1 SV=2","S","Function unknown","PREDICTED: poly [ADP-ribose] polymerase 1 [Gossypium raimondii] "]
["c23847.graph_c0","--","--","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cell wall organization (GO:0071555);; ","--","--","--","--","Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein TSUD_206660 [Trifolium subterraneum]"]
["c33037.graph_c0","--","--","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[C]","Energy production and conversion ","--","Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g06690 PE=1 SV=1","C","Energy production and conversion","uncharacterized oxidoreductase At1g06690, chloroplastic isoform X3 [Durio zibethinus]"]
["c39923.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","K10643|1.09628e-112|gra:105782867|K10643 CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] | (RefSeq) uncharacterized LOC105782867","[K]","Transcription ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","--","K","Transcription","hypothetical protein GOBAR_DD08240 [Gossypium barbadense]"]
["c86019.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: catalytic activity (GO:0003824);; ","K00665|9.4564e-56|csl:COCSUDRAFT_49000|K00665 fatty acid synthase, animal type [EC:2.3.1.85] | (RefSeq) hypothetical protein","[I]","Lipid transport and metabolism ","Beta-ketoacyl synthase, N-terminal domain","--","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein COCSUDRAFT_49000 [Coccomyxa subellipsoidea C-169] "]
["c29635.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; Pentatricopeptide repeat domain;; PPR repeat;; PPR repeat;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana OX=3702 GN=At2g01390/At2g01380 PE=2 SV=2","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At2g01390 isoform X1 [Gossypium raimondii] "]
["c43857.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ligase activity (GO:0016874);; ","--","[A]","RNA processing and modification ","RING-variant domain","--","O","Posttranslational modification, protein turnover, chaperones","RING/U-box superfamily protein isoform 3 [Theobroma cacao]"]
["c61274.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K04733|2.29373e-79|gra:105773976|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) putative receptor-like protein kinase At4g00960","--","--","Protein tyrosine kinase;; Protein kinase domain","Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CRK6 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: cysteine-rich receptor-like protein kinase 6 [Gossypium arboreum] "]
["c44882.graph_c0","--","--","Cellular Component: chromosome, centromeric region (GO:0000775);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: CTD phosphatase activity (GO:0008420);; Cellular Component: integral component of membrane (GO:0016021);; ","K17616|0|tcc:TCM_008843|K17616 CTD small phosphatase-like protein 2 [EC:3.1.3.-] | (RefSeq) SCP1-like small phosphatase 5 isoform 1","[K]","Transcription ","NLI interacting factor-like phosphatase","RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana OX=3702 GN=CPL3 PE=1 SV=2","K","Transcription","SCP1-like small phosphatase 5 isoform 4 [Theobroma cacao]"]
["c57031.graph_c0","--","--","Molecular Function: transferase activity (GO:0016740);; ","--","--","--","--","--","S","Function unknown","PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Theobroma cacao]"]
["c53684.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02921|4.98633e-40|csl:COCSUDRAFT_33375|K02921 large subunit ribosomal protein L37Ae | (RefSeq) 60S ribosomal protein L37a","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L37ae protein family","60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) OX=436017 GN=RPL37a PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein M413DRAFT_17621 [Hebeloma cylindrosporum h7]"]
["c36494.graph_c1","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain","Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana OX=3702 GN=WAKL14 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: wall-associated receptor kinase-like 14 [Gossypium hirsutum] "]
["c872.graph_c0","[CHR]","Energy production and conversion ;; Coenzyme transport and metabolism ;; General function prediction only ","Biological Process: metabolic process (GO:0008152);; ","K00049|1.55836e-18|ccp:CHC_T00009559001|K00049 glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] | (RefSeq) glyoxylate reductase/hydroxypyruvate reductase","[C]","Energy production and conversion ","D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain","--","C","Energy production and conversion","hypothetical protein F442_18335 [Phytophthora parasitica P10297]"]
["c52609.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF565)","Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2","S","Function unknown","PREDICTED: ycf20-like protein isoform X1 [Gossypium raimondii] "]
["c24485.graph_c0","--","--","Molecular Function: glutathione transferase activity (GO:0004364);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Molecular Function: glutathione binding (GO:0043295);; ","K00799|1.68263e-14|gra:105791436|K00799 glutathione S-transferase [EC:2.5.1.18] | (RefSeq) glutathione S-transferase F6-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","Glutathione S-transferase F4 OS=Arabidopsis thaliana OX=3702 GN=GSTF4 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","glutathione S-transferase F1, partial [Malva pusilla]"]
["c25396.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111318704 isoform X1 [Durio zibethinus] "]
["c33220.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108478372 [Gossypium arboreum]"]
["c42220.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: cytoplasm (GO:0005737);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; Biological Process: D-amino acid catabolic process (GO:0019478);; ","K07560|1.60635e-75|tcc:TCM_029768|K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] | (RefSeq) D-tyrosyl-tRNA(Tyr) deacylase isoform 1","[J]","Translation, ribosomal structure and biogenesis ","D-Tyr-tRNA(Tyr) deacylase","Negative regulator of systemic acquired resistance SNI1 OS=Arabidopsis thaliana OX=3702 GN=SNI1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","D-tyrosyl-tRNA(Tyr) deacylase isoform 1 [Theobroma cacao]"]
["c84170.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: shikimate 3-dehydrogenase (NADP+) activity (GO:0004764);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13832|2.80195e-41|fve:101311490|K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] | (RefSeq) bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like","[E]","Amino acid transport and metabolism ","--","Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB3004 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Fragaria vesca subsp. vesca]"]
["c43369.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: protein folding (GO:0006457);; Molecular Function: unfolded protein binding (GO:0051082);; ","K08057|0|tcc:TCM_025085|K08057 calreticulin | (RefSeq) Calreticulin 3 isoform 1","[O]","Posttranslational modification, protein turnover, chaperones ","Calreticulin family","Calreticulin-3 OS=Arabidopsis thaliana OX=3702 GN=CRT3 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","calreticulin-3-like [Durio zibethinus]"]
["c28781.graph_c0","--","--","--","--","[R]","General function prediction only ","--","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107960755 [Gossypium hirsutum]"]
["c26496.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_007G013800 [Gossypium raimondii]"]
["c4558.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: regulation of growth (GO:0040008);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1","K","Transcription","unnamed protein product [Coffea canephora]"]
["c3979.graph_c0","[K]","Transcription ","Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; ","K13457|2.18776e-29|tcc:TCM_025696|K13457 disease resistance protein RPM1 | (RefSeq) Disease resistance protein RPM1, putative isoform 1","[T]","Signal transduction mechanisms ","--","Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1","S","Function unknown","disease resistance protein RPM1-like [Durio zibethinus]"]
["c89275.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","putative copia-like retrotransposon protein [Oryza sativa Japonica Group]"]
["c35219.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105797944 [Gossypium raimondii] "]
["c37250.graph_c0","[N]","Cell motility ","Biological Process: DNA mediated transformation (GO:0009294);; Biological Process: response to bacterium (GO:0009617);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: mannan synthase activity (GO:0051753);; Biological Process: mannosylation (GO:0097502);; ","K13680|0|tcc:TCM_043600|K13680 beta-mannan synthase [EC:2.4.1.32] | (RefSeq) Nucleotide-diphospho-sugar transferases superfamily protein","--","--","Glycosyltransferase like family 2;; Glycosyl transferase family group 2;; Glycosyl transferase family 2;; Glycosyl transferase family 21","Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana OX=3702 GN=CSLA9 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Gossypium arboreum]"]
["c44157.graph_c2","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; Protein of unknown function (DUF1084)","Probable serine/threonine-protein kinase PBL23 OS=Arabidopsis thaliana OX=3702 GN=PBL23 PE=2 SV=1","T","Signal transduction mechanisms","probable serine/threonine-protein kinase PBL23 [Durio zibethinus]"]
["c36150.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1677)","--","S","Function unknown","uncharacterized protein LOC111284882 [Durio zibethinus] "]
["c33319.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein At1g08160-like [Gossypium raimondii] "]
["c46526.graph_c0","[P]","Inorganic ion transport and metabolism ","--","K18059|0|tcc:TCM_042964|K18059 sulfate transporter 4 | (RefSeq) Sulfate transporter 4.1 isoform 1","[P]","Inorganic ion transport and metabolism ","Sulfate permease family;; STAS domain;; Sulfate permease family;; Sulfate permease family","Probable sulfate transporter 4.2 OS=Arabidopsis thaliana OX=3702 GN=SULTR4;2 PE=2 SV=2","P","Inorganic ion transport and metabolism","Sulfate transporter 4.1 isoform 2 [Theobroma cacao]"]
["c78874.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K12896|7.04707e-17|gra:105785564|K12896 splicing factor, arginine/serine-rich 7 | (RefSeq) serine/arginine-rich splicing factor RSZ21-like","[A]","RNA processing and modification ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1","S","Function unknown","similar to arginine/serine-rich splicing factor 7 [Ectocarpus siliculosus]"]
["c48545.graph_c1","--","--","--","--","[R]","General function prediction only ","--","Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2","K","Transcription","PREDICTED: transcriptional corepressor LEUNIG-like [Gossypium hirsutum]"]
["c48005.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","S","Function unknown","uncharacterized protein LOC111295759 isoform X3 [Durio zibethinus]"]
["c8727.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana OX=3702 GN=WBC30 PE=1 SV=3","V","Defense mechanisms","PREDICTED: ABC transporter G family member 24 [Theobroma cacao]"]
["c48487.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein N-linked glycosylation (GO:0006487);; Cellular Component: oligosaccharyltransferase complex (GO:0008250);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: integral component of membrane (GO:0016021);; ","K12667|0|tcc:TCM_003993|K12667 oligosaccharyltransferase complex subunit delta (ribophorin II) | (RefSeq) Ribophorin II (RPN2) family protein isoform 2","[O]","Posttranslational modification, protein turnover, chaperones ","--","Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RPN2 PE=1 SV=1","S","Function unknown","Ribophorin II (RPN2) family protein isoform 2 [Theobroma cacao]"]
["c70686.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1","L","Replication, recombination and repair","Retrovirus-related Pol polyprotein from transposon 297 family [Cajanus cajan]"]
["c15742.graph_c1","--","--","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","non-haem dioxygenase in morphine synthesis N-terminal","Probable 2-oxoglutarate-dependent dioxygenase JRG21 OS=Arabidopsis thaliana OX=3702 GN=JRG21 PE=2 SV=1","S","Function unknown","PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like isoform X3 [Lupinus angustifolius]"]
["c39982.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein folding (GO:0006457);; ","K01802|3.25003e-31|gra:105795108|K01802 peptidylprolyl isomerase [EC:5.2.1.8] | (RefSeq) peptidyl-prolyl cis-trans isomerase FKBP12","[O]","Posttranslational modification, protein turnover, chaperones ","FKBP-type peptidyl-prolyl cis-trans isomerase","Peptidyl-prolyl cis-trans isomerase FKBP12 OS=Arabidopsis thaliana OX=3702 GN=FKBP12 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_005G224600 [Gossypium raimondii]"]
["c49747.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107938283 [Gossypium hirsutum]"]
["c54217.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105792691 isoform X2 [Gossypium raimondii] "]
["c7091.graph_c0","--","--","--","K00434|7.05648e-08|gra:105795404|K00434 L-ascorbate peroxidase [EC:1.11.1.11] | (RefSeq) L-ascorbate peroxidase 3, peroxisomal","--","--","--","Probable L-ascorbate peroxidase 4, peroxisomal OS=Oryza sativa subsp. japonica OX=39947 GN=APX4 PE=2 SV=1","P","Inorganic ion transport and metabolism","L-ascorbate peroxidase 3, peroxisomal-like [Gossypium hirsutum] "]
["c90779.graph_c0","--","--","--","--","[IG]","--","Saposin-like type B, region 2;; Saposin-like type B, region 1","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c37675.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","X8 domain","Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD14772 [Gossypium barbadense]"]
["c31361.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: translation elongation factor activity (GO:0003746);; Biological Process: translational initiation (GO:0006413);; Biological Process: translational frameshifting (GO:0006452);; Molecular Function: ribosome binding (GO:0043022);; Biological Process: positive regulation of translational elongation (GO:0045901);; Biological Process: positive regulation of translational termination (GO:0045905);; ","K03263|3.11864e-47|eus:EUTSA_v10008978mg|K03263 translation initiation factor 5A | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold","Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","translation initiation factor eIF-5A [Stagonospora sp. SRC1lsM3a]"]
["c47646.graph_c0","--","--","--","--","--","--","bHLH-MYC and R2R3-MYB transcription factors N-terminal","Transcription factor LHW OS=Arabidopsis thaliana OX=3702 GN=LHW PE=1 SV=1","S","Function unknown","transcription factor LHW-like isoform X1 [Durio zibethinus]"]
["c91489.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","--","--","--","--","--","--","--","--","--"]
["c73162.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105796295 [Gossypium raimondii] "]
["c77528.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","related to blue-light-inducible Bli-3 protein [Sporisorium reilianum f. sp. reilianum]"]
["c43432.graph_c0","[V]","Defense mechanisms ","Molecular Function: transporter activity (GO:0005215);; Molecular Function: ATP binding (GO:0005524);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[IR]","--","ABC transporter;; ABC-2 family transporter protein;; AAA domain, putative AbiEii toxin, Type IV TA system","ABC transporter A family member 7 OS=Arabidopsis thaliana OX=3702 GN=ABCA7 PE=3 SV=2","S","Function unknown","PREDICTED: ABC transporter A family member 7-like isoform X1 [Gossypium arboreum]"]
["c77869.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Biological Process: signal transduction (GO:0007165);; ","K04630|1.27881e-43|bvg:104885887|K04630 guanine nucleotide-binding protein G(i) subunit alpha | (RefSeq) guanine nucleotide-binding protein subunit alpha-like","[T]","Signal transduction mechanisms ","G-protein alpha subunit;; ADP-ribosylation factor family;; Gtr1/RagA G protein conserved region","Guanine nucleotide-binding protein alpha-2 subunit OS=Pisum sativum OX=3888 GN=GPA2 PE=2 SV=1","S","Function unknown","guanine nucleotide-binding protein subunit alpha [Puccinia triticina 1-1 BBBD Race 1]"]
["c38523.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","PRA1 family protein","PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: PRA1 family protein E-like [Gossypium raimondii]"]
["c84345.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c68074.graph_c0","--","--","--","--","--","--","Glucose-repressible protein Grg1","--","S","Function unknown","hypothetical protein FOYG_03306 [Fusarium oxysporum FOSC 3-a]"]
["c38726.graph_c0","[L]","Replication, recombination and repair ","Cellular Component: cytoplasm (GO:0005737);; Biological Process: double-strand break repair (GO:0006302);; Biological Process: mitotic recombination (GO:0006312);; Biological Process: telomere capping (GO:0016233);; Molecular Function: ATPase activity (GO:0016887);; Cellular Component: Mre11 complex (GO:0030870);; ","K10866|0|gra:105796483|K10866 DNA repair protein RAD50 [EC:3.6.-.-] | (RefSeq) DNA repair protein RAD50","[L]","Replication, recombination and repair ","Rad50 zinc hook motif;; AAA domain;; Putative exonuclease SbcCD, C subunit","DNA repair protein RAD50 OS=Arabidopsis thaliana OX=3702 GN=RAD50 PE=1 SV=2","L","Replication, recombination and repair","hypothetical protein F511_00777 [Dorcoceras hygrometricum]"]
["c1257.graph_c1","--","--","--","--","[C]","Energy production and conversion ","--","--","F","Nucleotide transport and metabolism","--"]
["c43451.graph_c2","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","RNA pol II promoter Fmp27 protein domain","Protein SABRE OS=Arabidopsis thaliana OX=3702 GN=SAB PE=1 SV=1","S","Function unknown","PREDICTED: protein SABRE-like [Gossypium hirsutum]"]
["c94247.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c11016.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: regulation of transcription from RNA polymerase II promoter in response to salt stress (GO:0061416);; ","K14803|3.44066e-30|gra:105793860|K14803 protein phosphatase PTC2/3 [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 27","[T]","Signal transduction mechanisms ","--","Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana OX=3702 GN=PP2C27 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 27 [Gossypium hirsutum] "]
["c36417.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM6 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein MANES_17G097600 [Manihot esculenta]"]
["c29471.graph_c0","--","--","Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: mediator complex (GO:0016592);; ","--","[K]","Transcription ","--","Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana OX=3702 GN=MED12 PE=1 SV=1","K","Transcription","mediator of RNA polymerase II transcription subunit 12-like isoform X3 [Durio zibethinus]"]
["c64374.graph_c0","--","--","--","--","[S]","Function unknown ","--","Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1","S","Function unknown","WD repeat and FYVE domain-containing 3 [Gossypium arboreum]"]
["c25345.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein (mitochondrion) [Cocos nucifera] "]
["c61893.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02924|1.73663e-15|mpp:MICPUCDRAFT_37283|K02924 large subunit ribosomal protein L39e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L39 protein","60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein THRCLA_11448, partial [Thraustotheca clavata]"]
["c33484.graph_c1","[R]","General function prediction only ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[C]","Energy production and conversion ","Aldo/keto reductase family","Probable aldo-keto reductase 1 OS=Glycine max OX=3847 GN=AKR1 PE=2 SV=1","C","Energy production and conversion","hypothetical protein B456_004G246200 [Gossypium raimondii]"]
["c45911.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ziziphus jujuba]"]
["c45214.graph_c1","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[TR]","--","TLC domain","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: transmembrane protein 56 [Gossypium raimondii] "]
["c6419.graph_c0","--","--","--","--","[L]","Replication, recombination and repair ","--","Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: putative F-box protein At1g67623 [Gossypium arboreum]"]
["c26790.graph_c0","--","--","Cellular Component: microtubule (GO:0005874);; Molecular Function: microtubule binding (GO:0008017);; Cellular Component: katanin complex (GO:0008352);; Biological Process: microtubule severing (GO:0051013);; ","K18643|1.39546e-17|egr:104445316|K18643 katanin p80 WD40 repeat-containing subunit B1 | (RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog","[D]","Cell cycle control, cell division, chromosome partitioning ","--","Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g23430 PE=2 SV=3","S","Function unknown","katanin p80 WD40 repeat-containing subunit B1 homolog isoform X3 [Durio zibethinus]"]
["c41741.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Uncharacterized protein TCM_037670 isoform 1 [Theobroma cacao]"]
["c63033.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HEL2-like [Gossypium arboreum]"]
["c38755.graph_c0","--","--","Cellular Component: origin recognition complex (GO:0000808);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA replication (GO:0006260);; ","K02604|3.46188e-79|tcc:TCM_021969|K02604 origin recognition complex subunit 2 | (RefSeq) Origin recognition complex second largest subunit 2","[L]","Replication, recombination and repair ","Origin recognition complex subunit 2;; Origin recognition complex subunit 2","Origin of replication complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=ORC2 PE=1 SV=1","L","Replication, recombination and repair","origin of replication complex subunit 2-like [Durio zibethinus] "]
["c36534.graph_c2","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like isoform X1 [Gossypium hirsutum]"]
["c48482.graph_c2","--","--","--","--","--","--","Protein of unknown function (DUF640)","Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1","S","Function unknown","hypothetical protein CCACVL1_11698 [Corchorus capsularis]"]
["c62419.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type peptidase activity (GO:0008236);; ","--","--","--","Subtilase family","Cucumisin OS=Cucumis melo OX=3656 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: cucumisin-like [Gossypium hirsutum]"]
["c1019.graph_c0","--","--","Cellular Component: lysosome (GO:0005764);; Biological Process: sphingolipid metabolic process (GO:0006665);; ","--","[IG]","--","--","--","O","Posttranslational modification, protein turnover, chaperones","predicted protein, partial [Hordeum vulgare subsp. vulgare]"]
["c83774.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02951|4.69121e-17|ccp:CHC_T00010265001|K02951 small subunit ribosomal protein S12e | (RefSeq) 40S ribosomal protein S12","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family","40S ribosomal protein S12 OS=Cyanophora paradoxa OX=2762 GN=RPS12 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","RecName: Full=40S ribosomal protein S12 "]
["c26489.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107959729 isoform X3 [Gossypium hirsutum] "]
["c85216.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; ","--","[T]","Signal transduction mechanisms ","NB-ARC domain","Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1","S","Function unknown","PREDICTED: putative disease resistance protein RGA3 [Gossypium hirsutum]"]
["c36030.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: proteolysis (GO:0006508);; ","K16297|1.767e-97|gra:105797346|K16297 serine carboxypeptidase-like clade II [EC:3.4.16.-] | (RefSeq) serine carboxypeptidase II-3-like","[OE]","--","Serine carboxypeptidase","Serine carboxypeptidase II-3 OS=Hordeum vulgare OX=4513 GN=CXP;2-3 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: serine carboxypeptidase II-3-like isoform X1 [Gossypium raimondii] "]
["c50679.graph_c0","--","--","Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: mitochondrial pyruvate transport (GO:0006850);; ","--","[D]","Cell cycle control, cell division, chromosome partitioning ","WLM domain;; PUB domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105802637 [Gossypium raimondii] "]
["c43449.graph_c0","--","--","Cellular Component: viral nucleocapsid (GO:0019013);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","K18732|1.16177e-32|gra:105768176|K18732 SAP domain-containing ribonucleoprotein | (RefSeq) protein MODIFIER OF SNC1 11-like","--","--","--","Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1","S","Function unknown","PREDICTED: protein MODIFIER OF SNC1 11-like isoform X2 [Gossypium hirsutum] "]
["c51313.graph_c0","--","--","--","--","--","--","TCP family transcription factor","Transcription factor TCP19 OS=Arabidopsis thaliana OX=3702 GN=TCP19 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TCP19-like [Gossypium raimondii] "]
["c21697.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: response to toxic substance (GO:0009636);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: cinnamate beta-D-glucosyltransferase activity (GO:0050412);; Biological Process: flavonoid glucuronidation (GO:0052696);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; ","--","[GC]","--","UDP-glucoronosyl and UDP-glucosyl transferase","Cinnamate beta-D-glucosyltransferase OS=Fragaria ananassa OX=3747 GN=GT2 PE=1 SV=1","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: cinnamate beta-D-glucosyltransferase-like [Fragaria vesca subsp. vesca]"]
["c36132.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Rhomboid family","RHOMBOID-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RBL4 PE=2 SV=1","S","Function unknown","PREDICTED: RHOMBOID-like protein 2 isoform X1 [Gossypium hirsutum] "]
["c31577.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: vacuole (GO:0005773);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; Cellular Component: apoplast (GO:0048046);; ","K01187|2.65945e-23|atr:18427275|K01187 alpha-glucosidase [EC:3.2.1.20] | (RefSeq) probable alpha-glucosidase Os06g0675700","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 31","Probable alpha-glucosidase Os06g0675700 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0675700 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","alpha-glucosidase [Lobosporangium transversale] "]
["c36789.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","--","K11168|7.34558e-113|gra:105774092|K11168 dehydrogenase/reductase SDR family member 12 [EC:1.1.-.-] | (RefSeq) dehydrogenase/reductase SDR family member 12","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","S","Function unknown","dehydrogenase/reductase SDR family member 12-like isoform X1 [Durio zibethinus]"]
["c36146.graph_c0","[S]","Function unknown ","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF1517)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105796652 [Gossypium raimondii] "]
["c52308.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: metal ion binding (GO:0046872);; ","K04124|4.51579e-170|gra:105792881|K04124 gibberellin 3-beta-dioxygenase [EC:1.14.11.15] | (RefSeq) gibberellin 3-beta-dioxygenase 1-like","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana OX=3702 GN=GA3OX3 PE=2 SV=1","S","Function unknown","PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Gossypium hirsutum]"]
["c1718.graph_c0","[R]","General function prediction only ","--","K14487|1.96471e-35|gra:105766468|K14487 auxin responsive GH3 gene family | (RefSeq) indole-3-acetic acid-amido synthetase GH3.17-like","--","--","GH3 auxin-responsive promoter","Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana OX=3702 GN=GH3.17 PE=1 SV=1","--","--","PREDICTED: 4-substituted benzoates-glutamate ligase GH3.12-like [Gossypium hirsutum]"]
["c71615.graph_c0","--","--","--","K00029|1.12515e-09|gra:105770329|K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] | (RefSeq) NADP-dependent malic enzyme-like","[C]","Energy production and conversion ","--","NADP-dependent malic enzyme OS=Vitis vinifera OX=29760 PE=2 SV=1","C","Energy production and conversion","PREDICTED: NADP-dependent malic enzyme-like isoform X2 [Gossypium arboreum]"]
["c94874.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","--","--","--","--","--","--","--"]
["c39255.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Molecular Function: transferase activity (GO:0016740);; ","--","--","--","--","--","S","Function unknown","BnaA10g06360D [Brassica napus]"]
["c32289.graph_c0","[K]","Transcription ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine rich repeat N-terminal domain","LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana OX=3702 GN=GSO1 PE=1 SV=1","S","Function unknown","PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii] "]
["c73019.graph_c0","--","--","Biological Process: ion transport (GO:0006811);; Cellular Component: membrane part (GO:0044425);; Biological Process: single-organism process (GO:0044699);; ","K02154|4.30881e-15|smo:SELMODRAFT_184043|K02154 V-type H+-transporting ATPase subunit a | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","V-type ATPase 116kDa subunit family","V-type proton ATPase subunit a1 OS=Arabidopsis thaliana OX=3702 GN=VHA-a1 PE=2 SV=1","C","Energy production and conversion","putative vacuolar proton translocating ATPase A subunit [Fragilariopsis cylindrus CCMP1102]"]
["c57598.graph_c0","--","--","--","--","[R]","General function prediction only ","C2 domain","Protein C2-DOMAIN ABA-RELATED 9 OS=Arabidopsis thaliana OX=3702 GN=CAR9 PE=2 SV=1","S","Function unknown","PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Gossypium raimondii]"]
["c44057.graph_c1","--","--","Biological Process: defense response to nematode (GO:0002215);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; Molecular Function: polysaccharide binding (GO:0030247);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17","Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis OX=3981 GN=HGN1 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: glucan endo-1,3-beta-glucosidase, basic vacuolar isoform-like [Gossypium raimondii] "]
["c39492.graph_c0","--","--","--","--","--","--","--","Protein WVD2-like 2 OS=Arabidopsis thaliana OX=3702 GN=WDL2 PE=2 SV=1","S","Function unknown","PREDICTED: protein WVD2-like 1 [Gossypium raimondii] "]
["c49066.graph_c1","--","--","Molecular Function: ionotropic glutamate receptor activity (GO:0004970);; Biological Process: ion transport (GO:0006811);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ionotropic glutamate receptor signaling pathway (GO:0035235);; ","K05387|1.19147e-47|tcc:TCM_029764|K05387 glutamate receptor, ionotropic, plant | (RefSeq) Glutamate-gated kainate-type ion channel receptor subunit GluR5, putative","[PET]","--","--","Glutamate receptor 3.5 OS=Arabidopsis thaliana OX=3702 GN=GLR3.5 PE=2 SV=2","S","Function unknown","PREDICTED: glutamate receptor 2.7 [Theobroma cacao]"]
["c34384.graph_c1","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein tyrosine kinase;; Protein kinase domain","Receptor-like protein kinase 2 OS=Arabidopsis thaliana OX=3702 GN=RCH2 PE=1 SV=1","S","Function unknown","PREDICTED: receptor-like protein kinase 2 [Gossypium hirsutum]"]
["c52725.graph_c0","--","--","--","K03926|4.96654e-06|gra:105769481|K03926 periplasmic divalent cation tolerance protein | (RefSeq) protein CutA, chloroplastic-like","--","--","--","--","--","--","--"]
["c15249.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: embryo development (GO:0009790);; Cellular Component: membrane (GO:0016020);; Biological Process: regulation of cellular process (GO:0050794);; ","--","--","--","--","--","--","--","LOW QUALITY PROTEIN: ethylene-responsive transcription factor ESR2-like [Herrania umbratica]"]
["c43512.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: sialidase-like [Gossypium raimondii] "]
["c53386.graph_c0","--","--","--","K15102|1.30456e-22|tcc:TCM_014732|K15102 solute carrier family 25 (mitochondrial phosphate transporter), member 3 | (RefSeq) Phosphate transporter 3,1","--","--","--","--","S","Function unknown","Phosphate transporter 3,1 [Theobroma cacao]"]
["c46429.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","Domain of unknown function (DUF3444);; DnaJ domain","Chaperone protein dnaJ 49 OS=Arabidopsis thaliana OX=3702 GN=ATJ49 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC107951885 [Gossypium hirsutum]"]
["c29158.graph_c2","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","--","RHOMBOID-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RBL2 PE=1 SV=1","S","Function unknown","RHOMBOID-like protein 2 [Durio zibethinus]"]
["c62963.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108472773 [Gossypium arboreum]"]
["c3615.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852);; Biological Process: translational initiation (GO:0006413);; ","K03251|2.1997e-26|zma:100383775|K03251 translation initiation factor 3 subunit D | (RefSeq) cl2592_1, GRMZM2G102779; uncharacterized LOC100383775","[J]","Translation, ribosomal structure and biogenesis ","Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)","Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana OX=3702 GN=TIF3D1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","unknown [Picea sitchensis]"]
["c48512.graph_c0","--","--","Molecular Function: GTPase activator activity (GO:0005096);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: cytosol (GO:0005829);; Biological Process: floral organ abscission (GO:0010227);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: activation of GTPase activity (GO:0090630);; ","K12486|3.49701e-146|gra:105768321|K12486 stromal membrane-associated protein | (RefSeq) probable ADP-ribosylation factor GTPase-activating protein AGD5","[T]","Signal transduction mechanisms ","--","Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana OX=3702 GN=AGD5 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X3 [Gossypium raimondii]"]
["c54177.graph_c0","--","--","--","--","--","--","--","--","--","--","SAC3 family protein B isoform X1 [Durio zibethinus]"]
["c70837.graph_c0","--","--","--","--","--","--","Reverse transcriptase-like","--","S","Function unknown","hypothetical protein GOBAR_DD10317 [Gossypium barbadense]"]
["c81481.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: beta-glucosidase activity (GO:0008422);; Molecular Function: scopolin beta-glucosidase activity (GO:0102483);; ","K01188|5.61709e-14|gra:105783838|K01188 beta-glucosidase [EC:3.2.1.21] | (RefSeq) beta-glucosidase 40-like","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolase family 1","Beta-glucosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=BGLU6 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_AA11696 [Gossypium barbadense]"]
["c71570.graph_c0","--","--","--","--","--","--","Nucleotide-diphospho-sugar transferase","Uncharacterized protein At4g15970 OS=Arabidopsis thaliana OX=3702 GN=At4g15970 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Nucleotide-diphospho-sugar transferase [Corchorus capsularis]"]
["c48479.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor (GO:0050664);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K13447|0|tcc:TCM_016350|K13447 respiratory burst oxidase [EC:1.6.3.- 1.11.1.-] | (RefSeq) Respiratory burst oxidase protein A","[PQ]","--","Respiratory burst NADPH oxidase;; FAD-binding domain;; Ferric reductase like transmembrane component;; EF-hand domain pair","Respiratory burst oxidase homolog protein A OS=Solanum tuberosum OX=4113 GN=RBOHA PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","respiratory burst oxidase homolog protein A isoform X1 [Herrania umbratica]"]
["c38251.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: cellulase activity (GO:0008810);; Biological Process: cellulose catabolic process (GO:0030245);; ","--","--","--","Glycosyl hydrolase family 9","Endoglucanase 11 OS=Arabidopsis thaliana OX=3702 GN=At2g32990 PE=2 SV=1","G","Carbohydrate transport and metabolism","endoglucanase 11-like [Durio zibethinus]"]
["c17012.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: chloroplast (GO:0009507);; ","--","--","--","Polyketide cyclase / dehydrase and lipid transport","--","S","Function unknown","hypothetical protein GOBAR_DD11379 [Gossypium barbadense]"]
["c33623.graph_c0","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter;; ABC transporter","ABC transporter G family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCG21 PE=2 SV=2","V","Defense mechanisms","PREDICTED: ABC transporter G family member 21 [Gossypium raimondii] "]
["c66863.graph_c0","--","--","--","K02921|2.07664e-08|rcu:8276062|K02921 large subunit ribosomal protein L37Ae | (RefSeq) 60S ribosomal protein L37a","[J]","Translation, ribosomal structure and biogenesis ","--","60S ribosomal protein L37a OS=Gossypium hirsutum OX=3635 GN=RPL37A PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein POPTR_002G140100v3 [Populus trichocarpa] "]
["c33118.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: protein PXR1-like [Gossypium hirsutum] "]
["c90575.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: metabolic process (GO:0008152);; Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor (GO:0016671);; ","K07304|6.96436e-14|mpp:MICPUCDRAFT_34655|K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] | (RefSeq) Peptide-methionine--S-oxide reductase","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein SOVF_183140 [Spinacia oleracea]"]
["c91570.graph_c0","--","--","--","--","--","--","Transferrin","--","S","Function unknown","--"]
["c48903.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: pollen germination (GO:0009846);; Biological Process: longitudinal axis specification (GO:0009942);; Biological Process: radial axis specification (GO:0009945);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: embryonic meristem development (GO:0048508);; Biological Process: anther development (GO:0048653);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine rich repeat N-terminal domain;; Leucine Rich repeat","LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=2 SV=1","S","Function unknown","PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Gossypium raimondii] "]
["c6153.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD13944 [Gossypium barbadense]"]
["c93415.graph_c0","--","--","--","--","--","--","--","--","A","RNA processing and modification","--"]
["c67160.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Gossypium hirsutum]"]
["c176.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107912785 [Gossypium hirsutum]"]
["c33893.graph_c0","--","--","--","--","[R]","General function prediction only ","Retrotransposon gag protein","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC108481480 [Gossypium arboreum] "]
["c43560.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","--","--","SBP domain","Teosinte glume architecture 1 OS=Zea mays OX=4577 GN=TGA1 PE=3 SV=1","S","Function unknown","teosinte glume architecture 1-like [Gossypium hirsutum] "]
["c28236.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02945|2.23398e-77|fve:101295027|K02945 small subunit ribosomal protein S1 | (RefSeq) 30S ribosomal protein S1, chloroplastic","--","--","S1 RNA binding domain","30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 30S ribosomal protein S1, chloroplastic [Fragaria vesca subsp. vesca]"]
["c70967.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","K14497|1.31785e-37|gra:105784046|K14497 protein phosphatase 2C [EC:3.1.3.16] | (RefSeq) protein phosphatase 2C 37-like","[T]","Signal transduction mechanisms ","--","Protein phosphatase 2C 37 OS=Arabidopsis thaliana OX=3702 GN=PP2CA PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein B456_013G022100 [Gossypium raimondii]"]
["c83648.graph_c0","--","--","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Molecular Function: 2-dehydropantoate 2-reductase activity (GO:0008677);; Biological Process: proton transport (GO:0015992);; Biological Process: glucose import (GO:0046323);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","--","--","--","--","G","Carbohydrate transport and metabolism","hypothetical protein IQ07DRAFT_521073 [Pyrenochaeta sp. DS3sAY3a]"]
["c87405.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: transport (GO:0006810);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; Cellular Component: nuclear lumen (GO:0031981);; Cellular Component: macromolecular complex (GO:0032991);; Cellular Component: membrane part (GO:0044425);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: single-organism process (GO:0044699);; Molecular Function: metal ion binding (GO:0046872);; ","K00083|1.3539e-19|sind:105179042|K00083 cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] | (RefSeq) probable mannitol dehydrogenase","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Alcohol dehydrogenase GroES-like domain","Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana OX=3702 GN=CAD3 PE=1 SV=1","C","Energy production and conversion","chaperonin 10-like protein [Syncephalastrum racemosum]"]
["c45616.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","K05868|0|gra:105787405|K05868 cyclin B | (RefSeq) G2/mitotic-specific cyclin-2-like","[D]","Cell cycle control, cell division, chromosome partitioning ","Cyclin, N-terminal domain;; Cyclin, C-terminal domain","G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia OX=36902 PE=2 SV=1","D","Cell cycle control, cell division, chromosome partitioning","PREDICTED: G2/mitotic-specific cyclin-2-like isoform X1 [Gossypium hirsutum] "]
["c72503.graph_c0","--","--","Molecular Function: enzyme inhibitor activity (GO:0004857);; Biological Process: double fertilization forming a zygote and endosperm (GO:0009567);; Biological Process: negative regulation of catalytic activity (GO:0043086);; ","--","--","--","Plant invertase/pectin methylesterase inhibitor","Pectinesterase inhibitor 9 OS=Arabidopsis thaliana OX=3702 GN=PMEI9 PE=2 SV=1","S","Function unknown","hypothetical protein B456_007G090200 [Gossypium raimondii]"]
["c73069.graph_c0","[R]","General function prediction only ","--","K01513|4.95501e-35|cit:102630945|K01513 ectonucleotide pyrophosphatase/phosphodiesterase family member 1/3 [EC:3.1.4.1 3.6.1.9] | (RefSeq) venom phosphodiesterase 2","[R]","General function prediction only ","Type I phosphodiesterase / nucleotide pyrophosphatase","--","S","Function unknown","hypothetical protein BSLG_04440 [Batrachochytrium salamandrivorans]"]
["c46771.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105771784 [Gossypium raimondii]"]
["c24782.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Protein of unknown function (DUF2781)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107937855 [Gossypium hirsutum] "]
["c7424.graph_c1","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; ","K20603|9.19454e-17|tcc:TCM_037597|K20603 mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] | (RefSeq) Disease resistance protein RPS5, putative isoform 1","--","--","--","--","S","Function unknown","probable disease resistance protein At1g12280 isoform X5 [Durio zibethinus]"]
["c92091.graph_c0","[H]","Coenzyme transport and metabolism ","--","K16871|1.70183e-07|vra:106756560|K16871 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] | (RefSeq) gamma aminobutyrate transaminase 3, chloroplastic","[E]","Amino acid transport and metabolism ","--","Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=OSL2 PE=1 SV=2","E","Amino acid transport and metabolism","hypothetical protein AXG93_4751s1270 [Marchantia polymorpha subsp. ruderalis]"]
["c7791.graph_c0","--","--","Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Cellular Component: extracellular space (GO:0005615);; Cellular Component: nucleus (GO:0005634);; Cellular Component: lysosome (GO:0005764);; Biological Process: response to desiccation (GO:0009269);; Biological Process: response to salt stress (GO:0009651);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603);; ","K01373|3.29634e-99|ath:AT4G39090|K01373 cathepsin F [EC:3.4.22.41] | (RefSeq) RD19; Papain family cysteine protease","[O]","Posttranslational modification, protein turnover, chaperones ","Papain family cysteine protease","Cysteine protease RD19A OS=Arabidopsis thaliana OX=3702 GN=RD19A PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Papain family cysteine protease [Arabidopsis thaliana] "]
["c76325.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: membrane (GO:0016020);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana OX=3702 GN=RLK1 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Theobroma cacao]"]
["c36248.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|2.98519e-62|gra:105763483|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor RAX3-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1","K","Transcription","transcription factor RAX3 [Momordica charantia]"]
["c44079.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K05863|2.48559e-91|tcc:TCM_008142|K05863 solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 | (RefSeq) ADP/ATP carrier 3 isoform 1","[C]","Energy production and conversion ","Mitochondrial carrier protein;; Mitochondrial carrier protein","ADP,ATP carrier protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=AAC3 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","ADP,ATP carrier protein 3, mitochondrial [Herrania umbratica]"]
["c47486.graph_c0","--","--","--","K02154|1.29015e-11|gra:105799297|K02154 V-type H+-transporting ATPase subunit a | (RefSeq) V-type proton ATPase subunit a1-like","--","--","--","V-type proton ATPase subunit a1 OS=Arabidopsis thaliana OX=3702 GN=VHA-a1 PE=2 SV=1","--","--","V-type proton ATPase subunit a1-like isoform X3 [Durio zibethinus]"]
["c26099.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA02701 [Gossypium barbadense]"]
["c52724.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein COLO4_20083 [Corchorus olitorius]"]
["c41417.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Domain of unknown function (DUF588)","CASP-like protein F16 OS=Gossypium hirsutum OX=3635 GN=F16 PE=2 SV=1","S","Function unknown","hypothetical protein B456_002G037500 [Gossypium raimondii]"]
["c42221.graph_c0","[R]","General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","K06130|5.6488e-89|gra:105768702|K06130 lysophospholipase II [EC:3.1.1.5] | (RefSeq) acyl-protein thioesterase 1-like","[I]","Lipid transport and metabolism ","Phospholipase/Carboxylesterase;; Serine aminopeptidase, S33;; Dienelactone hydrolase family;; Prolyl oligopeptidase family;; Phospholipase/Carboxylesterase","Probable carboxylesterase SOBER1-like OS=Arabidopsis thaliana OX=3702 GN=At4g22300 PE=2 SV=1","S","Function unknown","PREDICTED: probable carboxylesterase SOBER1-like [Gossypium hirsutum]"]
["c90112.graph_c0","[C]","Energy production and conversion ","Molecular Function: succinate-CoA ligase (ADP-forming) activity (GO:0004775);; Molecular Function: succinate-CoA ligase (GDP-forming) activity (GO:0004776);; Cellular Component: mitochondrial matrix (GO:0005759);; Cellular Component: cytosol (GO:0005829);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Biological Process: succinyl-CoA metabolic process (GO:0006104);; Biological Process: succinate metabolic process (GO:0006105);; Biological Process: nucleoside triphosphate biosynthetic process (GO:0009142);; Molecular Function: cofactor binding (GO:0048037);; ","K01899|5.82252e-38|mis:MICPUN_54789|K01899 succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] | (RefSeq) SCS-alpha; succinate-coa ligase","[C]","Energy production and conversion ","--","Succinate--CoA ligase [ADP-forming] subunit alpha OS=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) OX=478820 GN=SCSa PE=1 SV=1","C","Energy production and conversion","Putative Succinyl-CoA ligase [Lichtheimia ramosa]"]
["c24903.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","--","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana OX=3702 GN=PP2C5 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 25 isoform X1 [Ricinus communis]"]
["c73056.graph_c0","--","--","--","--","--","--","Mitogen-activated protein kinase kinase 1 interacting","--","T","Signal transduction mechanisms","hypothetical protein SPPG_01432 [Spizellomyces punctatus DAOM BR117] "]
["c85342.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","--","--","T","Signal transduction mechanisms","--"]
["c69508.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: U-box domain-containing protein 5-like isoform X2 [Gossypium hirsutum]"]
["c56214.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: polysaccharide binding (GO:0030247);; ","--","--","--","Wall-associated receptor kinase galacturonan-binding","Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: wall-associated receptor kinase 2-like [Gossypium raimondii] "]
["c16698.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein B456_008G051800 [Gossypium raimondii] "]
["c23830.graph_c0","[R]","General function prediction only ","--","K19761|6.59435e-103|gra:105787972|K19761 gamma-glutamylaminecyclotransferase [EC:2.3.2.-] | (RefSeq) putative gamma-glutamylcyclotransferase At3g02910","[S]","Function unknown ","Gamma-glutamyl cyclotransferase, AIG2-like","Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana OX=3702 GN=At3g02910 PE=2 SV=2","S","Function unknown","AIG2-like protein [Corchorus olitorius]"]
["c46615.graph_c0","--","--","Biological Process: cellular metabolic process (GO:0044237);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","--","--","--","--","G","Carbohydrate transport and metabolism","PREDICTED: uncharacterized protein LOC107887575 [Gossypium hirsutum]"]
["c88385.graph_c0","--","--","--","--","[J]","Translation, ribosomal structure and biogenesis ","--","--","J","Translation, ribosomal structure and biogenesis","hypothetical protein CVT25_011015 [Psilocybe cyanescens]"]
["c33245.graph_c0","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","--","--","WD40-like Beta Propeller Repeat;; Dipeptidyl peptidase IV (DPP IV) N-terminal region","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: uncharacterized protein LOC105797154 [Gossypium raimondii] "]
["c51034.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","Molecular Function: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity (GO:0004316);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00059|3.6873e-159|gra:105804754|K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] | (RefSeq) short-chain type dehydrogenase/reductase-like","[R]","General function prediction only ","Enoyl-(Acyl carrier protein) reductase;; short chain dehydrogenase;; KR domain","NADPH-dependent aldehyde reductase-like protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g03980 PE=3 SV=1","S","Function unknown","PREDICTED: short-chain type dehydrogenase/reductase-like [Gossypium raimondii]"]
["c40238.graph_c0","--","--","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: proteolysis (GO:0006508);; Molecular Function: dipeptidyl-peptidase activity (GO:0008239);; Cellular Component: integral component of membrane (GO:0016021);; ","K01285|0|gra:105786320|K01285 lysosomal Pro-X carboxypeptidase [EC:3.4.16.2] | (RefSeq) lysosomal Pro-X carboxypeptidase-like","[OR]","--","Serine carboxypeptidase S28","Probable serine protease EDA2 OS=Arabidopsis thaliana OX=3702 GN=EDA2 PE=2 SV=2","S","Function unknown","hypothetical protein B456_002G237800 [Gossypium raimondii]"]
["c31275.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","S","Function unknown","hypothetical protein VITISV_013966 [Vitis vinifera]"]
["c10250.graph_c0","--","--","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Molecular Function: metal ion binding (GO:0046872);; ","K01090|1.26782e-39|vvi:100249353|K01090 protein phosphatase [EC:3.1.3.16] | (RefSeq) serine/threonine-protein phosphatase BSL1","[R]","General function prediction only ","--","Serine/threonine-protein phosphatase BSL1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BSL1 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein VITISV_016668 [Vitis vinifera]"]
["c49801.graph_c0","[KL]","Transcription ;; Replication, recombination and repair ","--","--","[R]","General function prediction only ","Helicase conserved C-terminal domain;; Chromo (CHRromatin Organisation MOdifier) domain;; SNF2 family N-terminal domain;; PHD-finger","Helicase protein MOM1 OS=Arabidopsis thaliana OX=3702 GN=MOM1 PE=1 SV=1","L","Replication, recombination and repair","uncharacterized protein LOC111284231, partial [Durio zibethinus]"]
["c31235.graph_c0","[R]","General function prediction only ","--","--","[OW]","--","Hemopexin","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c90685.graph_c0","--","--","Biological Process: DNA damage checkpoint (GO:0000077);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: ATP-dependent RNA helicase activity (GO:0004004);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: phosphomethylpyrimidine kinase activity (GO:0008972);; Biological Process: thiamine biosynthetic process (GO:0009228);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Biological Process: phosphorylation (GO:0016310);; Cellular Component: checkpoint clamp complex (GO:0030896);; Molecular Function: thiaminase activity (GO:0050334);; ","K12823|2.34077e-09|gsl:Gasu_39470|K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase","[A]","RNA processing and modification ","--","DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana OX=3702 GN=RH20 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein IQ06DRAFT_316492 [Stagonospora sp. SRC1lsM3a]"]
["c39416.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor (GO:0016901);; Molecular Function: quinone binding (GO:0048038);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","Glucose / Sorbosone dehydrogenase","HIPL1 protein OS=Arabidopsis thaliana OX=3702 GN=HIPL1 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: HIPL1 protein-like [Gossypium hirsutum]"]
["c42881.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Cellular Component: thylakoid (GO:0009579);; ","--","--","--","Protein of unknown function (DUF2996)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105803375 [Gossypium raimondii] "]
["c39890.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1313)","Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1","S","Function unknown","PREDICTED: protein ELF4-LIKE 4-like [Gossypium hirsutum] "]
["c31599.graph_c0","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: stress enhanced protein 1, chloroplastic [Fragaria vesca subsp. vesca]"]
["c49563.graph_c0","[R]","General function prediction only ","--","--","--","--","bHLH-MYC and R2R3-MYB transcription factors N-terminal;; Helix-loop-helix DNA-binding domain;; Protein CHAPERONE-LIKE PROTEIN OF POR1-like;; NAD(P)-binding Rossmann-like domain;; Pyridine nucleotide-disulphide oxidoreductase;; FAD binding domain","Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana OX=3702 GN=AMS PE=1 SV=2","K","Transcription","PREDICTED: transcription factor ABORTED MICROSPORES isoform X2 [Gossypium raimondii]"]
["c72142.graph_c0","--","--","Cellular Component: photosystem I reaction center (GO:0009538);; Biological Process: photosynthesis (GO:0015979);; ","K02695|4.88348e-50|nnu:104595173|K02695 photosystem I subunit VI | (RefSeq) photosystem I reaction center subunit VI, chloroplastic-like","--","--","Photosystem I reaction centre subunit VI","Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAH PE=1 SV=1","S","Function unknown","hypothetical protein AQUCO_00100433v1 [Aquilegia coerulea]"]
["c41637.graph_c0","--","--","Molecular Function: structural molecule activity (GO:0005198);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: clathrin coat of trans-Golgi network vesicle (GO:0030130);; Cellular Component: clathrin coat of coated pit (GO:0030132);; ","K04646|2.7738e-72|gra:105776504|K04646 clathrin heavy chain | (RefSeq) clathrin heavy chain 1-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Clathrin, heavy-chain linker;; Clathrin propeller repeat","Clathrin heavy chain 1 OS=Arabidopsis thaliana OX=3702 GN=CHC1 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","unnamed protein product, partial [Coffea canephora]"]
["c48645.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","K16297|2.64849e-168|gra:105780458|K16297 serine carboxypeptidase-like clade II [EC:3.4.16.-] | (RefSeq) serine carboxypeptidase-like 27","[OE]","--","Serine carboxypeptidase;; Serine carboxypeptidase;; Eukaryotic integral membrane protein (DUF1751)","Serine carboxypeptidase-like 27 OS=Arabidopsis thaliana OX=3702 GN=SCPL27 PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein B456_012G094900 [Gossypium raimondii]"]
["c78080.graph_c0","--","--","--","--","--","--","A-macroglobulin receptor","--","--","--","--"]
["c51200.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: cysteine biosynthetic process from serine (GO:0006535);; Molecular Function: serine O-acetyltransferase activity (GO:0009001);; ","K00640|4.03397e-77|gra:105784007|K00640 serine O-acetyltransferase [EC:2.3.1.30] | (RefSeq) serine acetyltransferase 1, chloroplastic-like","[E]","Amino acid transport and metabolism ","Serine acetyltransferase, N-terminal","Serine acetyltransferase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAT3 PE=1 SV=3","E","Amino acid transport and metabolism","PREDICTED: serine acetyltransferase 1, chloroplastic-like [Gossypium arboreum]"]
["c48674.graph_c2","[M]","Cell wall/membrane/envelope biogenesis ","--","--","--","--","Protein kinase domain;; Protein tyrosine kinase","Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana OX=3702 GN=At5g10290 PE=2 SV=1","T","Signal transduction mechanisms","LRR receptor kinase SERK2-like [Olea europaea var. sylvestris]"]
["c41264.graph_c1","--","--","--","K15361|8.74897e-54|gra:105783158|K15361 WD repeat-containing protein 48 | (RefSeq) WD repeat-containing protein 48-like","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: WD repeat-containing protein 48-like [Gossypium hirsutum] "]
["c21176.graph_c0","--","--","--","--","[S]","Function unknown ","--","Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1","S","Function unknown","hypothetical protein B456_007G140000 [Gossypium raimondii]"]
["c84849.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]"]
["c28757.graph_c0","--","--","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","--","GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana OX=3702 GN=At1g29670 PE=2 SV=1","--","--","PREDICTED: GDSL esterase/lipase At1g29660-like [Gossypium hirsutum]"]
["c27127.graph_c1","[DPM]","Cell cycle control, cell division, chromosome partitioning ;; Inorganic ion transport and metabolism ;; Cell wall/membrane/envelope biogenesis ","Molecular Function: copper ion binding (GO:0005507);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: oxidoreductase activity, oxidizing metal ions (GO:0016722);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00423|1.34432e-82|csv:101221649|K00423 L-ascorbate oxidase [EC:1.10.3.3] | (RefSeq) L-ascorbate oxidase homolog","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase","L-ascorbate oxidase homolog OS=Nicotiana tabacum OX=4097 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: L-ascorbate oxidase homolog [Theobroma cacao]"]
["c53808.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: transmembrane receptor protein tyrosine kinase activity (GO:0004714);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway (GO:0007169);; Biological Process: lateral root morphogenesis (GO:0010102);; Biological Process: floral organ abscission (GO:0010227);; Biological Process: regulation of gene expression (GO:0010468);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: pectin catabolic process (GO:0045490);; Biological Process: protein autophosphorylation (GO:0046777);; ","--","--","--","--","Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1","S","Function unknown","receptor-like protein kinase HSL1 [Durio zibethinus]"]
["c52109.graph_c0","[V]","Defense mechanisms ","Molecular Function: peroxidase activity (GO:0004601);; Molecular Function: peroxiredoxin activity (GO:0051920);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K11188|2.58945e-149|gra:105778178|K11188 peroxiredoxin 6, 1-Cys peroxiredoxin [EC:1.11.1.7 1.11.1.15 3.1.1.-] | (RefSeq) 1-Cys peroxiredoxin","[O]","Posttranslational modification, protein turnover, chaperones ","AhpC/TSA family;; Redoxin;; C-terminal domain of 1-Cys peroxiredoxin","1-Cys peroxiredoxin OS=Medicago truncatula OX=3880 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: 1-Cys peroxiredoxin [Gossypium raimondii] "]
["c44493.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","B3 DNA binding domain;; B3 DNA binding domain","B3 domain-containing protein REM16 OS=Arabidopsis thaliana OX=3702 GN=REM16 PE=2 SV=1","S","Function unknown","hypothetical protein B456_002G130300, partial [Gossypium raimondii]"]
["c9589.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: signal peptidase complex (GO:0005787);; Biological Process: signal peptide processing (GO:0006465);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ligase activity (GO:0016874);; ","--","--","--","--","Signal peptidase complex-like protein DTM1 OS=Oryza sativa subsp. japonica OX=39947 GN=DTM1 PE=2 SV=1","S","Function unknown","PREDICTED: signal peptidase complex-like protein DTM1 [Gossypium arboreum]"]
["c33351.graph_c0","--","--","Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: RNA biosynthetic process (GO:0032774);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108480966 [Gossypium arboreum] "]
["c41766.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: cytochrome b6f complex (GO:0009512);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450;; Cytochrome P450","Cytochrome P450 82C4 OS=Arabidopsis thaliana OX=3702 GN=CYP82C4 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","cytochrome P450 82C4-like [Durio zibethinus]"]
["c28164.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c76161.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein CCACVL1_00664 [Corchorus capsularis]"]
["c37465.graph_c0","--","--","--","--","--","--","Kelch motif;; Kelch motif","--","--","--","Uncharacterized protein TCM_032490 isoform 1 [Theobroma cacao] "]
["c38530.graph_c0","--","--","--","--","--","--","Cytochrome c oxidase biogenesis protein Cmc1 like","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105768973 [Gossypium raimondii] "]
["c13832.graph_c0","--","--","--","--","--","--","--","--","--","--","cyclin-dependent protein kinase inhibitor SMR10-like [Durio zibethinus]"]
["c15366.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD36691 [Gossypium barbadense]"]
["c4707.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","[R]","General function prediction only ","Leucine rich repeat N-terminal domain","Receptor-like protein 9DC2 OS=Solanum pimpinellifolium OX=4084 GN=9DC2 PE=3 SV=1","S","Function unknown","PREDICTED: receptor-like protein 12 [Gossypium arboreum]"]
["c48906.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: protein dephosphorylation (GO:0006470);; ","K04382|2.95267e-78|crb:CARUB_v10009845mg|K04382 serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] | (RefSeq) hypothetical protein","[T]","Signal transduction mechanisms ","--","Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=PP2A1 PE=1 SV=1","T","Signal transduction mechanisms","serine/threonine protein phosphatase PP2A catalytic subunit-like protein [Trifolium pratense]"]
["c32972.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Biological Process: coenzyme A metabolic process (GO:0015936);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00021|1.31157e-39|mtr:MTR_5g026430|K00021 hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] | (RefSeq) 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like protein","[I]","Lipid transport and metabolism ","Hydroxymethylglutaryl-coenzyme A reductase","3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Camptotheca acuminata OX=16922 PE=3 SV=1","I","Lipid transport and metabolism","3-hydroxy-3-methylglutaryl coenzyme a reductase [Trifolium pratense]"]
["c61816.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111312620 [Durio zibethinus]"]
["c43868.graph_c0","--","--","Cellular Component: plasmodesma (GO:0009506);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein At1g08160 isoform X1 [Gossypium raimondii] "]
["c46291.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Protein phosphatase 2C;; PHAX RNA-binding domain;; PHAX RNA-binding domain","Probable protein phosphatase 2C 72 OS=Arabidopsis thaliana OX=3702 GN=At5g26010 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 72 [Gossypium arboreum] "]
["c40890.graph_c0","[KL]","Transcription ;; Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA mediated transformation (GO:0009294);; Biological Process: double-strand break repair via synthesis-dependent strand annealing (GO:0045003);; ","K15505|0|gra:105783805|K15505 DNA repair protein RAD5 [EC:3.6.4.-] | (RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2","[KL]","--","SNF2 family N-terminal domain;; Helicase conserved C-terminal domain;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; Ring finger domain;; RING-type zinc-finger;; Prokaryotic RING finger family 4;; zinc-RING finger domain;; HIRAN domain;; SNF2 family N-terminal domain;; Type III restriction enzyme, res subunit","DNA repair protein RAD5A OS=Arabidopsis thaliana OX=3702 GN=RAD5A PE=1 SV=1","L","Replication, recombination and repair","PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1 [Gossypium arboreum]"]
["c20489.graph_c1","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K17499|3.53679e-10|gra:105768835|K17499 protein phosphatase 1G [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 60","--","--","--","--","--","--","PREDICTED: probable protein phosphatase 2C 60 [Gossypium hirsutum] "]
["c24914.graph_c0","--","--","--","K09422|5.27121e-74|gra:105781809|K09422 myb proto-oncogene protein, plant | (RefSeq) myb-related protein Pp1-like","[K]","Transcription ","--","Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1","K","Transcription","PREDICTED: myb-related protein Pp1-like [Gossypium raimondii] "]
["c70382.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat N-terminal domain","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1","--","--","PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Gossypium hirsutum]"]
["c32306.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_014294 isoform 3 [Theobroma cacao]"]
["c92234.graph_c0","--","--","--","--","--","--","--","--","V","Defense mechanisms","--"]
["c45484.graph_c1","--","--","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: protein dephosphorylation (GO:0006470);; ","K01110|2.77688e-25|gra:105802231|K01110 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] | (RefSeq) uncharacterized LOC105802231","--","--","--","--","--","--","hypothetical protein GOBAR_DD27736 [Gossypium barbadense]"]
["c21554.graph_c0","--","--","Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of pH (GO:0006885);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: sodium:proton antiporter activity (GO:0015385);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sodium ion transmembrane transport (GO:0035725);; Biological Process: potassium ion homeostasis (GO:0055075);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","[P]","Inorganic ion transport and metabolism ","Sodium/hydrogen exchanger family","Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana OX=3702 GN=NHX2 PE=2 SV=2","P","Inorganic ion transport and metabolism","hypothetical protein B456_004G250300 [Gossypium raimondii]"]
["c63700.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","ABC transporter G family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCG9 PE=3 SV=2","V","Defense mechanisms","ABC transporter G family member 9-like isoform X2 [Durio zibethinus]"]
["c27444.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: viral nucleocapsid (GO:0019013);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","--","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","--","S","Function unknown","PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Gossypium hirsutum]"]
["c27325.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC110696438 [Chenopodium quinoa]"]
["c46037.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","TOM1-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=TOL9 PE=1 SV=1","S","Function unknown","TOM1-like protein 2 [Gossypium arboreum]"]
["c47827.graph_c0","--","--","--","K18730|0|gra:105802388|K18730 PERQ amino acid-rich with GYF domain-containing protein | (RefSeq) uncharacterized LOC105802388","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107923982 [Gossypium hirsutum]"]
["c32618.graph_c0","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthetic electron transport chain (GO:0009767);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; ","--","--","--","NAD(P)H dehydrogenase subunit S","NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1","S","Function unknown","PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Gossypium arboreum] "]
["c95051.graph_c0","--","--","--","--","[I]","Lipid transport and metabolism ","--","--","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein AMAG_05740 [Allomyces macrogynus ATCC 38327]"]
["c7078.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K13429|2.682e-47|gra:105778077|K13429 chitin elicitor receptor kinase 1 | (RefSeq) chitin elicitor receptor kinase 1-like","--","--","--","Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CERK1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: chitin elicitor receptor kinase 1-like isoform X2 [Gossypium raimondii]"]
["c29537.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","PRA1 family protein","PRA1 family protein D OS=Arabidopsis thaliana OX=3702 GN=PRA1D PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein GOBAR_DD34750 [Gossypium barbadense] "]
["c35193.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Glucose-fructose oxidoreductase domain-containing protein 2, putative [Theobroma cacao]"]
["c40345.graph_c0","--","--","--","--","--","--","PAP_fibrillin","Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP4 PE=1 SV=1","S","Function unknown","PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Gossypium raimondii] "]
["c82154.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: damaged DNA binding (GO:0003684);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA repair (GO:0006281);; Biological Process: translation (GO:0006412);; Molecular Function: oxidized purine nucleobase lesion DNA N-glycosylase activity (GO:0008534);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02985|1.63892e-58|pop:POPTR_0012s07830g|K02985 small subunit ribosomal protein S3e | (RefSeq) POPTRDRAFT_570052; hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","KH domain","40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","ribosomal protein S3 [Naematelia encephala]"]
["c9493.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","V","Defense mechanisms","hypothetical protein VITISV_034973 [Vitis vinifera]"]
["c40051.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","--","--","[R]","General function prediction only ","Enoyl-(Acyl carrier protein) reductase;; short chain dehydrogenase;; KR domain","Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia OX=55183 PE=1 SV=1","S","Function unknown","secoisolariciresinol dehydrogenase-like [Durio zibethinus]"]
["c32055.graph_c0","--","--","--","--","--","--","RWP-RK domain","Protein RKD3 OS=Arabidopsis thaliana OX=3702 GN=RKD3 PE=3 SV=1","S","Function unknown","PREDICTED: protein RKD1-like [Gossypium hirsutum]"]
["c20875.graph_c0","--","--","--","--","--","--","--","Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RPP13L4 PE=1 SV=2","S","Function unknown","PREDICTED: uncharacterized protein LOC108477015 isoform X2 [Gossypium arboreum]"]
["c37246.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","Metallothionein","Metallothionein-like protein type 2 MET1 OS=Fragaria ananassa OX=3747 GN=MET1 PE=3 SV=1","S","Function unknown","PREDICTED: metallothionein-like protein type 2 MET1 [Fragaria vesca subsp. vesca]"]
["c44376.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: protein catabolic process (GO:0030163);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana OX=3702 GN=ASPG1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Gossypium hirsutum]"]
["c31573.graph_c0","--","--","--","--","[S]","Function unknown ","--","Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX2 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105775033 isoform X1 [Gossypium raimondii] "]
["c41546.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K14829|9.29275e-63|gra:105788671|K14829 pre-rRNA-processing protein IPI3 | (RefSeq) protein ROOT INITIATION DEFECTIVE 3-like","[R]","General function prediction only ","WD domain, G-beta repeat","Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1","S","Function unknown","PREDICTED: protein ROOT INITIATION DEFECTIVE 3-like isoform X3 [Gossypium raimondii]"]
["c57567.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_004903 isoform 1 [Theobroma cacao]"]
["c81487.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105784585 [Gossypium raimondii] "]
["c52611.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105776422 [Gossypium raimondii] "]
["c17834.graph_c0","--","--","Biological Process: megagametogenesis (GO:0009561);; ","--","--","--","Probable lipid transfer;; Protease inhibitor/seed storage/LTP family","Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1","S","Function unknown","PREDICTED: non-specific lipid transfer protein-like 1 [Theobroma cacao] "]
["c35699.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g06620 PE=2 SV=1","S","Function unknown","1-aminocyclopropane-1-carboxylate oxidase homolog 12-like isoform X1 [Durio zibethinus]"]
["c51418.graph_c0","--","--","Molecular Function: diacylglycerol O-acyltransferase activity (GO:0004144);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: lipid droplet (GO:0005811);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: response to cold (GO:0009409);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to glucose (GO:0009749);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: positive regulation of seed germination (GO:0010030);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: triglyceride biosynthetic process (GO:0019432);; Biological Process: regulation of embryonic development (GO:0045995);; ","K11155|1.1896e-34|jcu:105637897|K11155 diacylglycerol O-acyltransferase 1 [EC:2.3.1.20 2.3.1.75 2.3.1.76] | (RefSeq) DGAT1, DGAT-1; diacylglycerol O-acyltransferase 1","[I]","Lipid transport and metabolism ","--","Diacylglycerol O-acyltransferase 1 OS=Corylus americana OX=78632 GN=DGAT1 PE=1 SV=1","I","Lipid transport and metabolism","diacylglycerol acyltransferase, partial [Jatropha curcas]"]
["c52871.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Gossypium raimondii] "]
["c39168.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA03041 [Gossypium barbadense]"]
["c34547.graph_c1","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor BIM2 OS=Arabidopsis thaliana OX=3702 GN=BIM2 PE=1 SV=1","K","Transcription","transcription factor BIM2 [Herrania umbratica]"]
["c32844.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat N-terminal domain","Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana OX=3702 GN=At1g06840 PE=2 SV=2","T","Signal transduction mechanisms","probable LRR receptor-like serine/threonine-protein kinase At1g06840 isoform X1 [Durio zibethinus]"]
["c33463.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","K03098|9.5721e-11|pper:PRUPE_ppa012058mg|K03098 apolipoprotein D and lipocalin family protein | (RefSeq) hypothetical protein","[M]","Cell wall/membrane/envelope biogenesis ","Lipocalin-like domain;; Lipocalin / cytosolic fatty-acid binding protein family;; Triabin","--","M","Cell wall/membrane/envelope biogenesis","lipocalin-like lipo protein [Ostreococcus tauri]"]
["c12242.graph_c1","[E]","Amino acid transport and metabolism ","Biological Process: cellular amino acid metabolic process (GO:0006520);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K01733|8.40386e-108|gra:105776805|K01733 threonine synthase [EC:4.2.3.1] | (RefSeq) threonine synthase, chloroplastic-like","--","--","Pyridoxal-phosphate dependent enzyme","Threonine synthase, chloroplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: threonine synthase, chloroplastic-like [Gossypium hirsutum]"]
["c50639.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA33899 [Gossypium barbadense]"]
["c42318.graph_c0","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","[C]","Energy production and conversion ","CBS domain","SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=KING1 PE=1 SV=2","S","Function unknown","PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Gossypium hirsutum]"]
["c11087.graph_c0","--","--","Biological Process: response to light stimulus (GO:0009416);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting in photosystem I (GO:0009768);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: pigment binding (GO:0031409);; ","K08917|1.84089e-82|osa:4336028|K08917 light-harvesting complex II chlorophyll a/b binding protein 6 | (RefSeq) chlorophyll a-b binding protein CP24, chloroplastic","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1","S","Function unknown","hypothetical protein OsJ_15029 [Oryza sativa Japonica Group]"]
["c8592.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ligase activity (GO:0016874);; ","--","--","--","--","--","S","Function unknown","PREDICTED: serine-rich adhesin for platelets-like [Gossypium hirsutum] "]
["c48398.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: chloroplast (GO:0009507);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ domain","Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATJ11 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized J domain-containing protein C4H3.01-like [Gossypium hirsutum] "]
["c54421.graph_c0","--","--","--","K08245|2.8762e-07|cit:102622108|K08245 phytepsin [EC:3.4.23.40] | (RefSeq) aspartic proteinase","[O]","Posttranslational modification, protein turnover, chaperones ","--","Cyprosin (Fragment) OS=Cynara cardunculus OX=4265 GN=CYPRO1 PE=1 SV=2","--","--","PREDICTED: aspartic proteinase [Citrus sinensis] "]
["c2917.graph_c0","--","--","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[E]","Amino acid transport and metabolism ","--","--","I","Lipid transport and metabolism","dihydropteridine reductase-like protein [Basidiobolus meristosporus CBS 931.73]"]
["c24840.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107404162 [Ziziphus jujuba]"]
["c33831.graph_c0","--","--","Cellular Component: nucleosome (GO:0000786);; Cellular Component: heterochromatin (GO:0000792);; Molecular Function: DNA binding (GO:0003677);; Molecular Function: chromatin binding (GO:0003682);; Cellular Component: nucleolus (GO:0005730);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11251|9.29556e-52|gra:105801621|K11251 histone H2A | (RefSeq) probable histone H2A.5","[B]","Chromatin structure and dynamics ","Core histone H2A/H2B/H3/H4","Histone H2A OS=Chlamydomonas reinhardtii OX=3055 GN=H2A-II PE=3 SV=1","B","Chromatin structure and dynamics","Histone H2A [Corchorus capsularis]"]
["c21014.graph_c0","--","--","--","--","--","--","--","Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1","S","Function unknown","Homeodomain-like superfamily protein, putative [Theobroma cacao]"]
["c90092.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","fatty acid hydroxylase superfamily protein [Melanopsichium pennsylvanicum 4]"]
["c47964.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","Sugar (and other) transporter;; Major Facilitator Superfamily;; Sugar (and other) transporter","D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g59250 PE=1 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein B456_003G129000 [Gossypium raimondii]"]
["c36070.graph_c0","--","--","Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[C]","Energy production and conversion ","Mitochondrial carrier protein","Mitochondrial uncoupling protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUMP3 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: mitochondrial substrate carrier family protein ucpB isoform X3 [Gossypium raimondii]"]
["c61914.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; ","K02903|1.09616e-15|smo:SELMODRAFT_164298|K02903 large subunit ribosomal protein L28e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L28e protein family","--","J","Translation, ribosomal structure and biogenesis","hypothetical protein RirG_112590 [Rhizophagus irregularis DAOM 197198w] "]
["c90123.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]"]
["c73199.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c17160.graph_c0","[R]","General function prediction only ","Cellular Component: fungal-type vacuole membrane (GO:0000329);; Cellular Component: extracellular space (GO:0005615);; Biological Process: macroautophagy (GO:0016236);; ","--","--","--","Fasciclin domain","--","M","Cell wall/membrane/envelope biogenesis","Fasciclin-domain-containing protein [Stagonospora sp. SRC1lsM3a]"]
["c26161.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[TR]","--","--","Probable serine/threonine protein kinase IREH1 OS=Arabidopsis thaliana OX=3702 GN=IREH1 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA21267 [Gossypium barbadense]"]
["c67113.graph_c0","--","--","--","--","--","--","--","--","--","--","transcriptional regulator SUPERMAN-like [Durio zibethinus]"]
["c60489.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BXL2 PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD12155 [Gossypium barbadense]"]
["c34005.graph_c0","--","--","Molecular Function: actin filament binding (GO:0051015);; Biological Process: actin filament bundle assembly (GO:0051017);; ","K05768|1.48961e-50|gra:105761649|K05768 gelsolin | (RefSeq) villin-2","[Z]","Cytoskeleton ","Gelsolin repeat","Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2","S","Function unknown","villin-2-like isoform X1 [Durio zibethinus]"]
["c52309.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; ","K04733|0|gra:105779983|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) L-type lectin-domain containing receptor kinase VIII.2-like","--","--","Legume lectin domain;; Protein tyrosine kinase;; Protein kinase domain","Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana OX=3702 GN=LECRKS7 PE=2 SV=1","T","Signal transduction mechanisms","L-type lectin-domain containing receptor kinase VIII.2-like [Durio zibethinus]"]
["c37497.graph_c0","--","--","--","--","--","--","--","E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana OX=3702 GN=SIZ1 PE=1 SV=2","--","--","--"]
["c47365.graph_c0","--","--","--","K01166|9.60854e-31|gra:105775724|K01166 ribonuclease T2 [EC:3.1.27.1] | (RefSeq) ribonuclease 1-like","[A]","RNA processing and modification ","Ribonuclease T2 family;; Ribonuclease T2 family","Ribonuclease S-2 OS=Antirrhinum hispanicum OX=49039 GN=S2 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA23212 [Gossypium barbadense]"]
["c35436.graph_c0","--","--","Cellular Component: mitochondrial inner membrane presequence translocase complex (GO:0005744);; Biological Process: protein import into mitochondrial matrix (GO:0030150);; ","K17805|1.18502e-64|gra:105778086|K17805 mitochondrial import inner membrane translocase subunit TIM16 | (RefSeq) mitochondrial import inner membrane translocase subunit TIM16-like","[S]","Function unknown ","Pam16","Mitochondrial import inner membrane translocase subunit PAM16 like 2 OS=Arabidopsis thaliana OX=3702 GN=PAM16L2 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X2 [Gossypium raimondii] "]
["c35162.graph_c1","[R]","General function prediction only ","--","--","[T]","Signal transduction mechanisms ","NB-ARC domain;; Leucine rich repeat;; Leucine Rich repeats (2 copies)","Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1","S","Function unknown","Putative disease resistance RPP13-like protein 1 [Gossypium arboreum]"]
["c93410.graph_c0","[PR]","Inorganic ion transport and metabolism ;; General function prediction only ","--","--","--","--","--","--","P","Inorganic ion transport and metabolism","Phthalate 4,5-dioxygenase oxygenase subunit [Symbiodinium microadriaticum]"]
["c87051.graph_c0","--","--","--","--","--","--","--","--","--","--","vegetative cell wall protein gp1 [Diaporthe helianthi]"]
["c22047.graph_c0","--","--","--","--","--","--","Transcriptional repressor, ovate;; DNA-binding domain","Transcription repressor OFP2 OS=Arabidopsis thaliana OX=3702 GN=OFP2 PE=1 SV=1","S","Function unknown","PREDICTED: transcription repressor OFP1-like [Gossypium arboreum]"]
["c34219.graph_c0","--","--","Molecular Function: thiamine diphosphokinase activity (GO:0004788);; Molecular Function: ATP binding (GO:0005524);; Biological Process: mismatch repair (GO:0006298);; Biological Process: thiamine metabolic process (GO:0006772);; Biological Process: thiamine diphosphate biosynthetic process (GO:0009229);; Molecular Function: thiamine binding (GO:0030975);; Molecular Function: mismatched DNA binding (GO:0030983);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD27492 [Gossypium barbadense]"]
["c41449.graph_c0","--","--","Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; ","K01850|1.45917e-47|mdm:103402853|K01850 chorismate mutase [EC:5.4.99.5] | (RefSeq) chorismate mutase 3, chloroplastic","[E]","Amino acid transport and metabolism ","--","Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM1 PE=1 SV=3","E","Amino acid transport and metabolism","hypothetical protein B456_013G090700 [Gossypium raimondii]"]
["c31491.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","DKL","--","--"]
["c88227.graph_c0","[G]","Carbohydrate transport and metabolism ","Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: pentose-phosphate shunt (GO:0006098);; Molecular Function: xylose isomerase activity (GO:0009045);; Biological Process: D-xylose metabolic process (GO:0042732);; Molecular Function: metal ion binding (GO:0046872);; ","K01805|6.25698e-59|bna:106361633|K01805 xylose isomerase [EC:5.3.1.5] | (RefSeq) xylose isomerase","--","--","--","Xylose isomerase OS=Arabidopsis thaliana OX=3702 GN=XYLA PE=2 SV=2","G","Carbohydrate transport and metabolism","xylose isomerase, partial [Arabidopsis thaliana]"]
["c40236.graph_c0","--","--","--","--","--","--","Complex1_LYR-like;; Complex 1 protein (LYR family)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107930633 [Gossypium hirsutum] "]
["c27544.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","--","Actin OS=Scherffelia dubia OX=3190 PE=2 SV=1","Z","Cytoskeleton","actin, partial [Picea mariana]"]
["c40604.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c18378.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111311045 isoform X1 [Durio zibethinus]"]
["c44615.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Biological Process: negative regulation of flavonoid biosynthetic process (GO:0009964);; Molecular Function: anthocyanidin reductase activity (GO:0033729);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08695|3.27176e-180|tcc:TCM_030072|K08695 anthocyanidin reductase [EC:1.3.1.77] | (RefSeq) NAD(P)-binding Rossmann-fold superfamily protein","[V]","Defense mechanisms ","NAD dependent epimerase/dehydratase family;; Male sterility protein;; 3-beta hydroxysteroid dehydrogenase/isomerase family;; Methyltransferase domain;; alpha/beta hydrolase fold;; Alpha/beta hydrolase family","Anthocyanidin reductase ((2S)-flavan-3-ol-forming) OS=Vitis vinifera OX=29760 GN=ANR PE=3 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: anthocyanidin reductase [Theobroma cacao]"]
["c78374.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: methionine metabolic process (GO:0006555);; Biological Process: cellular amino acid biosynthetic process (GO:0008652);; Molecular Function: oxidoreductase activity (GO:0016491);; ","K08967|1.69528e-47|spen:107031798|K08967 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] | (RefSeq) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1-like","[S]","Function unknown ","ARD/ARD' family;; AraC-like ligand binding domain","1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_128349 PE=3 SV=1","S","Function unknown","PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1-like [Nicotiana tabacum]"]
["c35851.graph_c3","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","BEACH domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=BCHB PE=4 SV=1","S","Function unknown","PREDICTED: BEACH domain-containing protein lvsC [Gossypium raimondii]"]
["c19047.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02981|2.25707e-08|dosa:Os07t0207400-01|K02981 small subunit ribosomal protein S2e | (RAP-DB) Os07g0207400; Similar to RF12 protein (Fragment).","[J]","Translation, ribosomal structure and biogenesis ","--","40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","unknown [Zea mays]"]
["c76283.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","TLC domain","--","U","Intracellular trafficking, secretion, and vesicular transport","Sphingosine N-acyltransferase lag1 [Choanephora cucurbitarum]"]
["c46606.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","QWRF family;; QWRF family","QWRF motif-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=QWRF2 PE=2 SV=1","S","Function unknown","PREDICTED: QWRF motif-containing protein 2-like [Gossypium raimondii] "]
["c40730.graph_c1","--","--","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05933|7.18627e-50|tcc:TCM_002179|K05933 aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] | (RefSeq) Ethylene-forming enzyme","[QR]","--","2OG-Fe(II) oxygenase superfamily","1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida OX=4102 GN=ACO1 PE=1 SV=1","S","Function unknown","PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 1-like [Gossypium arboreum]"]
["c24948.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02940|3.7607e-32|cvr:CHLNCDRAFT_59621|K02940 large subunit ribosomal protein L9e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L6","60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein CHLNCDRAFT_59621 [Chlorella variabilis] "]
["c42994.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: glutamine metabolic process (GO:0006541);; Molecular Function: transferase activity (GO:0016740);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Peptidase C26;; Glutamine amidotransferase class-I","Putative glutamine amidotransferase GAT1_2.1 OS=Arabidopsis thaliana OX=3702 GN=GAT1_2.1 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD12277 [Gossypium barbadense]"]
["c91679.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Biological Process: glucose import (GO:0046323);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","[R]","General function prediction only ","Sugar (and other) transporter;; Major Facilitator Superfamily","Probable polyol transporter 3 OS=Arabidopsis thaliana OX=3702 GN=PLT3 PE=3 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein COCVIDRAFT_42163 [Bipolaris victoriae FI3] "]
["c26825.graph_c1","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen (GO:0016709);; Molecular Function: heme binding (GO:0020037);; Biological Process: secondary metabolite biosynthetic process (GO:0044550);; Biological Process: oxidation-reduction process (GO:0055114);; ","K07418|4.00728e-157|gra:105781489|K07418 cytochrome P450 family 2 subfamily J [EC:1.14.14.1] | (RefSeq) cytochrome P450 71D9-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 71D8 OS=Glycine max OX=3847 GN=CYP71D8 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: cytochrome P450 71D9-like [Gossypium hirsutum]"]
["c24224.graph_c0","--","--","--","--","[TZR]","--","LIM domain","--","S","Function unknown","hypothetical protein PIIN_07161 [Serendipita indica DSM 11827]"]
["c8288.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain","Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E38 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD28687 [Gossypium barbadense]"]
["c51320.graph_c0","--","--","--","--","--","--","Agglutinin domain;; Ricin-type beta-trefoil lectin domain-like","--","S","Function unknown","hypothetical protein B456_005G011400 [Gossypium raimondii]"]
["c42166.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","--","[L]","Replication, recombination and repair ","CRS1 / YhbY (CRM) domain","Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g25440 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Gossypium arboreum] "]
["c42150.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","Legume lectin domain","L-type lectin-domain containing receptor kinase I.3 OS=Arabidopsis thaliana OX=3702 GN=LECRK13 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: probable L-type lectin-domain containing receptor kinase II.1 [Gossypium hirsutum]"]
["c30041.graph_c0","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of flower development (GO:0009909);; Cellular Component: NuA4 histone acetyltransferase complex (GO:0035267);; Biological Process: histone H4-K5 acetylation (GO:0043981);; Biological Process: regulation of timing of transition from vegetative to reproductive phase (GO:0048510);; ","K11341|6.93401e-119|gra:105802171|K11341 YEATS domain-containing protein 4 | (RefSeq) transcription initiation factor TFIID subunit 14b-like","[K]","Transcription ","YEATS family","Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana OX=3702 GN=TAF14B PE=1 SV=1","K","Transcription","transcription initiation factor TFIID subunit 14b-like [Durio zibethinus]"]
["c15720.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","GPI-anchored protein LLG1 OS=Arabidopsis thaliana OX=3702 GN=LLG1 PE=1 SV=1","S","Function unknown","PREDICTED: GPI-anchored protein LORELEI-like isoform X1 [Gossypium raimondii] "]
["c92337.graph_c0","--","--","Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: small nucleolar ribonucleoprotein complex (GO:0005732);; Cellular Component: viral nucleocapsid (GO:0019013);; ","K12626|1.3739e-16|smo:SELMODRAFT_417493|K12626 U6 snRNA-associated Sm-like protein LSm7 | (RefSeq) hypothetical protein","[A]","RNA processing and modification ","LSM domain","Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1","K","Transcription","small nuclear ribonucleoprotein [Stemphylium lycopersici]"]
["c33557.graph_c1","--","--","Molecular Function: O-methyltransferase activity (GO:0008171);; Biological Process: methylation (GO:0032259);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[R]","General function prediction only ","--","Acetylserotonin O-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=ASMT PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD30228 [Gossypium barbadense]"]
["c14099.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein GOBAR_DD14497 [Gossypium barbadense]"]
["c17018.graph_c0","--","--","--","--","--","--","--","Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum OX=3544 GN=PGM1 PE=2 SV=1","--","--","--"]
["c44053.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein F383_24260 [Gossypium arboreum]"]
["c32187.graph_c1","[P]","Inorganic ion transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion transmembrane transporter activity (GO:0046873);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","CorA-like Mg2+ transporter protein","--","S","Function unknown","hypothetical protein GOBAR_DD17923 [Gossypium barbadense]"]
["c30254.graph_c0","--","--","--","--","--","--","--","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like isoform X2 [Gossypium hirsutum]"]
["c33409.graph_c0","--","--","Molecular Function: glycylpeptide N-tetradecanoyltransferase activity (GO:0004379);; Biological Process: N-terminal protein myristoylation (GO:0006499);; ","K00671|8.09087e-91|gra:105773116|K00671 glycylpeptide N-tetradecanoyltransferase [EC:2.3.1.97] | (RefSeq) glycylpeptide N-tetradecanoyltransferase 1","[I]","Lipid transport and metabolism ","Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain","Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NMT1 PE=1 SV=2","I","Lipid transport and metabolism","PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Gossypium arboreum]"]
["c55374.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","--","--","S","Function unknown","probable vacuolar amino acid transporter YPQ3 isoform X2 [Durio zibethinus]"]
["c34585.graph_c0","--","--","--","--","--","--","--","F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1","S","Function unknown","PREDICTED: F-box protein CPR30 [Theobroma cacao]"]
["c5815.graph_c0","--","--","--","--","--","--","--","--","--","--","IQ domain-containing protein IQM2 [Herrania umbratica]"]
["c47900.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","[R]","General function prediction only ","Kelch motif;; Kelch motif;; Galactose oxidase, central domain;; Kelch motif;; F-box domain;; Galactose oxidase, central domain","F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD15888 [Gossypium barbadense]"]
["c58505.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; Biological Process: ribosomal large subunit biogenesis (GO:0042273);; ","K02898|1.64801e-45|bvg:104894952|K02898 large subunit ribosomal protein L26e | (RefSeq) 60S ribosomal protein L26-1","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal proteins L26 eukaryotic, L24P archaeal;; KOW motif","60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","PREDICTED: 60S ribosomal protein L26-1-like [Ipomoea nil]"]
["c30033.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107931311 [Gossypium hirsutum] "]
["c82335.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein ubiquitination (GO:0016567);; ","--","[S]","Function unknown ","--","U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1","S","Function unknown","U-box domain-containing protein 16 [Durio zibethinus]"]
["c26125.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: anthocyanin-containing compound biosynthetic process (GO:0009718);; Molecular Function: ribonuclease T2 activity (GO:0033897);; Biological Process: RNA phosphodiester bond hydrolysis, endonucleolytic (GO:0090502);; ","K01166|2.60924e-17|thj:104805163|K01166 ribonuclease T2 [EC:3.1.27.1] | (RefSeq) ribonuclease 1","[A]","RNA processing and modification ","Ribonuclease T2 family","Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1","S","Function unknown","PREDICTED: ribonuclease 1-like [Gossypium hirsutum]"]
["c78806.graph_c0","[V]","Defense mechanisms ","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter","ABC transporter G family member 26 OS=Arabidopsis thaliana OX=3702 GN=ABCG26 PE=3 SV=2","V","Defense mechanisms","PREDICTED: ABC transporter G family member 11 [Nelumbo nucifera] "]
["c32454.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K14497|2.19091e-45|rcu:8287463|K14497 protein phosphatase 2C [EC:3.1.3.16] | (RefSeq) protein phosphatase 2C 37","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana OX=3702 GN=At2g29380 PE=2 SV=1","T","Signal transduction mechanisms","protein phosphatase 2C 37-like [Durio zibethinus]"]
["c77990.graph_c0","--","--","--","K02183|2.13795e-08|pda:103722965|K02183 calmodulin | (RefSeq) calmodulin-7","[T]","Signal transduction mechanisms ","--","Calmodulin OS=Zea mays OX=4577 GN=CALM1 PE=2 SV=2","DTZ","--","PREDICTED: calmodulin-7-like [Beta vulgaris subsp. vulgaris]"]
["c43630.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107957399 [Gossypium hirsutum] "]
["c44479.graph_c0","[S]","Function unknown ","Cellular Component: integral component of membrane (GO:0016021);; ","K20929|0|gra:105799819|K20929 glyoxal/methylglyoxal oxidase [EC:1.2.3.15] | (RefSeq) galactose oxidase-like","--","--","Glyoxal oxidase N-terminus;; Domain of unknown function (DUF1929);; Galactose oxidase, central domain","Aldehyde oxidase GLOX OS=Vitis pseudoreticulata OX=231512 GN=GLOX PE=2 SV=1","S","Function unknown","PREDICTED: galactose oxidase-like [Gossypium raimondii] "]
["c38799.graph_c1","[C]","Energy production and conversion ","Molecular Function: methylmalonate-semialdehyde dehydrogenase (acylating) activity (GO:0004491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00140|0|gra:105776556|K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] | (RefSeq) methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like","[EG]","--","Aldehyde dehydrogenase family;; Aldehyde dehydrogenase family","Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH6B2 PE=1 SV=2","I","Lipid transport and metabolism","hypothetical protein GOBAR_DD07683 [Gossypium barbadense]"]
["c21993.graph_c0","[K]","Transcription ","--","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine Rich repeat","Receptor-like protein 51 OS=Arabidopsis thaliana OX=3702 GN=RLP51 PE=1 SV=1","S","Function unknown","PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Gossypium raimondii] "]
["c92171.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: protein trichome birefringence-like 38 [Fragaria vesca subsp. vesca]"]
["c59320.graph_c0","--","--","--","--","--","--","--","F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1","--","--","PREDICTED: F-box/kelch-repeat protein At1g80440 [Theobroma cacao]"]
["c88844.graph_c0","--","--","--","--","--","--","Ataxin-2 C-terminal region","--","S","Function unknown","--"]
["c54689.graph_c0","--","--","--","K02891|4.29005e-07|vvi:100258955|K02891 large subunit ribosomal protein L22e | (RefSeq) 60S ribosomal protein L22-2","[J]","Translation, ribosomal structure and biogenesis ","--","60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Ribosomal protein [Parasponia andersonii]"]
["c38794.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter;; ABC transporter","ABC transporter G family member 22 OS=Arabidopsis thaliana OX=3702 GN=ABCG22 PE=1 SV=1","V","Defense mechanisms","PREDICTED: ABC transporter G family member 22-like isoform X3 [Gossypium hirsutum]"]
["c25771.graph_c0","--","--","--","--","--","--","--","IQ domain-containing protein IQM1 OS=Arabidopsis thaliana OX=3702 GN=IQM1 PE=1 SV=1","S","Function unknown","IQ domain-containing protein IQM1-like [Durio zibethinus] "]
["c63659.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: dehydration-responsive element-binding protein 2A-like [Gossypium arboreum]"]
["c74860.graph_c0","--","--","Cellular Component: histone acetyltransferase complex (GO:0000123);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: histone acetylation (GO:0016573);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","S","Function unknown","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis]"]
["c47940.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K13464|5.1475e-78|gra:105767628|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 3B-like","[S]","Function unknown ","Transmembrane proteins 14C;; tify domain;; Divergent CCT motif","Protein FATTY ACID EXPORT 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FAX2 PE=2 SV=1","S","Function unknown","PREDICTED: protein TIFY 3-like isoform X2 [Gossypium arboreum]"]
["c42901.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: root development (GO:0048364);; Molecular Function: triphosphatase activity (GO:0050355);; ","--","--","--","CYTH domain;; Anaphase-promoting complex APC subunit CDC26","Triphosphate tunel metalloenzyme 3 OS=Arabidopsis thaliana OX=3702 GN=TTM3 PE=1 SV=1","S","Function unknown","PREDICTED: triphosphate tunel metalloenzyme 3 [Gossypium raimondii] "]
["c45801.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111275880 [Durio zibethinus]"]
["c33981.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: metal ion binding (GO:0046872);; ","--","[A]","RNA processing and modification ","DEAD/DEAH box helicase","DExH-box ATP-dependent RNA helicase DExH8 OS=Arabidopsis thaliana OX=3702 GN=At2g47680 PE=2 SV=2","L","Replication, recombination and repair","PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Gossypium raimondii] "]
["c35586.graph_c0","[P]","Inorganic ion transport and metabolism ","Cellular Component: integral component of plasma membrane (GO:0005887);; Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);; Biological Process: sulfate transmembrane transport (GO:1902358);; ","K17470|1.32368e-71|jcu:105638842|K17470 sulfate transporter 1, high-affinity | (RefSeq) sulfate transporter 1.3-like","[P]","Inorganic ion transport and metabolism ","Sulfate permease family","High affinity sulfate transporter 2 OS=Stylosanthes hamata OX=37660 GN=ST2 PE=2 SV=1","P","Inorganic ion transport and metabolism","sulfate transporter 1.2-like [Hevea brasiliensis]"]
["c46614.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105766681 [Gossypium raimondii] "]
["c9329.graph_c0","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; ","K11275|1.26968e-22|gra:105783299|K11275 histone H1/5 | (RefSeq) histone H1-like","--","--","linker histone H1 and H5 family","Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1","S","Function unknown","histone H1-like [Durio zibethinus]"]
["c46922.graph_c1","[R]","General function prediction only ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","UvrD/REP helicase N-terminal domain;; UvrD-like helicase C-terminal domain;; AAA domain","--","L","Replication, recombination and repair","hypothetical protein B456_008G013300 [Gossypium raimondii]"]
["c43454.graph_c5","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","NAC domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=NAC035 PE=1 SV=2","S","Function unknown","hypothetical protein B456_011G090000 [Gossypium raimondii]"]
["c42349.graph_c0","[C]","Energy production and conversion ","Biological Process: metabolic process (GO:0008152);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: cofactor binding (GO:0048037);; ","K01899|4.34162e-172|gra:105783744|K01899 succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] | (RefSeq) probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial","[C]","Energy production and conversion ","CoA binding domain;; CoA-ligase;; Succinyl-CoA ligase like flavodoxin domain","Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum OX=4081 PE=1 SV=1","C","Energy production and conversion","succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [Durio zibethinus]"]
["c30198.graph_c1","--","--","--","K09422|1.58444e-63|pop:POPTR_0012s14540g|K09422 myb proto-oncogene protein, plant | (RefSeq) POPTRDRAFT_570586A; hypothetical protein","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Protein ODORANT1 OS=Petunia hybrida OX=4102 GN=ODO1 PE=2 SV=1","K","Transcription","protein ODORANT1-like isoform X1 [Momordica charantia]"]
["c89919.graph_c0","--","--","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: glucan endo-1,3-beta-D-glucosidase activity (GO:0042973);; ","--","--","--","Glycosyl hydrolases family 17","Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum OX=4565 GN=GLC1 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: glucan endo-1,3-beta-glucosidase-like [Fragaria vesca subsp. vesca]"]
["c73601.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","Cytochrome P450 71A4 OS=Solanum melongena OX=4111 GN=CYP71A4 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein GOBAR_DD34404 [Gossypium barbadense]"]
["c16725.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Tetratricopeptide repeat;; DYW family of nucleic acid deaminases;; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Gossypium arboreum]"]
["c60478.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108489645 isoform X2 [Gossypium arboreum]"]
["c82928.graph_c0","--","--","--","K17917|3.69927e-07|osa:4324745|K17917 sorting nexin-1/2 | (RefSeq) P0423B08.9; sorting nexin 1","[V]","Defense mechanisms ","PX domain","--","U","Intracellular trafficking, secretion, and vesicular transport","sorting nexin [Blumeria graminis f. sp. hordei DH14]"]
["c73978.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: transferase activity (GO:0016740);; ","--","[H]","Coenzyme transport and metabolism ","--","--","E","Amino acid transport and metabolism","molybdenum cofactor sulfurase-like [Herrania umbratica]"]
["c92907.graph_c0","--","--","Cellular Component: Doa10p ubiquitin ligase complex (GO:0000837);; Cellular Component: Hrd1p ubiquitin ligase ERAD-L complex (GO:0000839);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: retrograde protein transport, ER to cytosol (GO:0030970);; Molecular Function: polyubiquitin modification-dependent protein binding (GO:0031593);; Cellular Component: VCP-NPL4-UFD1 AAA ATPase complex (GO:0034098);; Biological Process: nonfunctional rRNA decay (GO:0070651);; Biological Process: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome (GO:0071629);; Biological Process: ER-associated misfolded protein catabolic process (GO:0071712);; Biological Process: positive regulation of protein localization to nucleus (GO:1900182);; Cellular Component: RQC complex (GO:1990112);; Biological Process: ribosome-associated ubiquitin-dependent protein catabolic process (GO:1990116);; ","K14016|3.54265e-29|cvr:CHLNCDRAFT_136896|K14016 ubiquitin fusion degradation protein 1 | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin fusion degradation protein UFD1","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein BTJ68_04049 [Hortaea werneckii EXF-2000]"]
["c65435.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","K01365|2.64459e-17|smo:SELMODRAFT_268054|K01365 cathepsin L [EC:3.4.22.15] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Cathepsin C exclusion domain;; Papain family cysteine protease","Zingipain-1 OS=Zingiber officinale OX=94328 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Dipeptidyl peptidase 1 [Symbiodinium microadriaticum]"]
["c89247.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","SNARE domain","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c45906.graph_c1","--","--","--","--","--","--","UL92 family","F-box protein SKIP31 OS=Arabidopsis thaliana OX=3702 GN=SKIP31 PE=1 SV=1","S","Function unknown","hypothetical protein B456_008G219400 [Gossypium raimondii]"]
["c53359.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF632)","Nitrate regulatory gene2 protein OS=Arabidopsis thaliana OX=3702 GN=NRG2 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107950649 [Gossypium hirsutum]"]
["c46086.graph_c0","[R]","General function prediction only ","Molecular Function: alcohol dehydrogenase (NAD) activity (GO:0004022);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: oxidation-reduction process (GO:0055114);; ","K18857|0|gra:105797087|K18857 alcohol dehydrogenase class-P [EC:1.1.1.1] | (RefSeq) alcohol dehydrogenase class-P","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Zinc-binding dehydrogenase;; Alcohol dehydrogenase GroES-like domain","Alcohol dehydrogenase class-P OS=Arabidopsis thaliana OX=3702 GN=ADH1 PE=1 SV=2","C","Energy production and conversion","PREDICTED: alcohol dehydrogenase class-P isoform X1 [Gossypium arboreum] "]
["c76736.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02901|2.80326e-33|vcn:VOLCADRAFT_74313|K02901 large subunit ribosomal protein L27e | (RefSeq) rpl27; component of cytosolic 80S ribosome and 60S large subunit","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L27e protein family","60S ribosomal protein L27 OS=Pyrobotrys stellata OX=3064 GN=RPL27 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein DL89DRAFT_277109 [Linderina pennispora]"]
["c66131.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: plant-type cell wall organization (GO:0009664);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|4.84904e-45|gra:105799802|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 21","--","--","Peroxidase","Peroxidase 21 OS=Arabidopsis thaliana OX=3702 GN=PER21 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein B456_006G168000 [Gossypium raimondii]"]
["c48387.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: protein dephosphorylation (GO:0006470);; ","K15423|1.75761e-128|gra:105782162|K15423 serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] | (RefSeq) serine/threonine-protein phosphatase PP-X isozyme 2","[GT]","--","Calcineurin-like phosphoesterase;; Calcineurin-like phosphoesterase","Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana OX=3702 GN=PPX2 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein phosphatase PP-X isozyme 2 isoform X1 [Gossypium hirsutum] "]
["c80204.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: plasma membrane fusion involved in cytogamy (GO:0032220);; Cellular Component: mating projection tip (GO:0043332);; ","--","--","--","--","--","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein IQ06DRAFT_26923 [Stagonospora sp. SRC1lsM3a]"]
["c51880.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Biological Process: transcription, DNA-templated (GO:0006351);; ","--","[K]","Transcription ","--","Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1","K","Transcription","PREDICTED: agamous-like MADS-box protein AGL80 [Gossypium arboreum]"]
["c51769.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; ","--","[T]","Signal transduction mechanisms ","--","Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At2g20050/At2g20040 PE=2 SV=2","T","Signal transduction mechanisms","protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X2 [Herrania umbratica]"]
["c28149.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH125 OS=Arabidopsis thaliana OX=3702 GN=BHLH125 PE=2 SV=1","K","Transcription","PREDICTED: transcription factor bHLH126-like [Gossypium hirsutum]"]
["c34938.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","formin-like protein 2 [Durio zibethinus]"]
["c23803.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: metabolic process (GO:0008152);; ","K01213|6.83041e-24|vvi:100253785|K01213 galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] | (RefSeq) exopolygalacturonase","--","--","--","Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: exopolygalacturonase [Vitis vinifera]"]
["c49051.graph_c0","[IQ]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ","Biological Process: biosynthetic process (GO:0009058);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity (GO:0016740);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K00654|0|cit:102617633|K00654 serine palmitoyltransferase [EC:2.3.1.50] | (RefSeq) long chain base biosynthesis protein 2a","[O]","Posttranslational modification, protein turnover, chaperones ","Aminotransferase class I and II;; SAM domain (Sterile alpha motif);; SAM domain (Sterile alpha motif)","Long chain base biosynthesis protein 2a OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0516000 PE=2 SV=1","H","Coenzyme transport and metabolism","long chain base biosynthesis protein 2a isoform X1 [Citrus clementina] "]
["c29816.graph_c0","--","--","--","--","--","--","MIT-like atracotoxin family","--","--","--","--"]
["c85180.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: polysaccharide binding (GO:0030247);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","X8 domain","Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=1 SV=3","G","Carbohydrate transport and metabolism","PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Fragaria vesca subsp. vesca]"]
["c69708.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107909489 isoform X2 [Gossypium hirsutum]"]
["c50845.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: proteolysis (GO:0006508);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Papain family cysteine protease;; Cathepsin propeptide inhibitor domain (I29);; Granulin;; Peptidase C1-like family","Oryzain alpha chain OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0650000 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: low-temperature-induced cysteine proteinase [Theobroma cacao] "]
["c69955.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105782371 [Gossypium raimondii] "]
["c8921.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase","Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana OX=3702 GN=LECRKS5 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Gossypium arboreum]"]
["c45461.graph_c0","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: peptidase activity (GO:0008233);; Biological Process: cellular protein metabolic process (GO:0044267);; ","K11855|0|gra:105801996|K11855 ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-terminal hydrolase 20-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin carboxyl-terminal hydrolase;; Ubiquitin carboxyl-terminal hydrolase","Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana OX=3702 GN=UBP20 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: ubiquitin carboxyl-terminal hydrolase 20-like [Gossypium hirsutum]"]
["c86898.graph_c0","--","--","--","--","--","--","Cystatin domain","--","S","Function unknown","cystatin b [Nannochloropsis gaditana]"]
["c30989.graph_c3","--","--","Molecular Function: structural molecule activity (GO:0005198);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: membrane coat (GO:0030117);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA05994 [Gossypium barbadense]"]
["c32223.graph_c1","--","--","--","--","--","--","--","Uncharacterized protein At5g01610 OS=Arabidopsis thaliana OX=3702 GN=At5g01610 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein At5g01610 [Raphanus sativus]"]
["c41146.graph_c1","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana OX=3702 GN=ERF110 PE=2 SV=2","K","Transcription","ethylene-responsive transcription factor ABR1-like [Durio zibethinus]"]
["c43805.graph_c0","[F]","Nucleotide transport and metabolism ","--","K00939|8.61573e-150|gra:105786400|K00939 adenylate kinase [EC:2.7.4.3] | (RefSeq) adenylate kinase 4","[F]","Nucleotide transport and metabolism ","Adenylate kinase;; AAA domain;; Adenylate kinase, active site lid","Adenylate kinase 4 OS=Oryza sativa subsp. japonica OX=39947 GN=ADK-B PE=2 SV=1","F","Nucleotide transport and metabolism","adenylate kinase 4-like isoform X1 [Durio zibethinus]"]
["c21141.graph_c1","--","--","Cellular Component: cell (GO:0005623);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03676|1.62937e-17|tcc:TCM_021154|K03676 glutaredoxin 3 | (RefSeq) Thioredoxin superfamily protein","[O]","Posttranslational modification, protein turnover, chaperones ","--","Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana OX=3702 GN=GRXS7 PE=3 SV=2","O","Posttranslational modification, protein turnover, chaperones","Glutaredoxin [Corchorus capsularis] "]
["c73629.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","--","--","ribonuclease H [Trifolium pratense]"]
["c6867.graph_c0","--","--","Cellular Component: exocyst (GO:0000145);; Cellular Component: nucleus (GO:0005634);; Biological Process: vesicle docking involved in exocytosis (GO:0006904);; ","K07195|6.25695e-36|gra:105767592|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70A1","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exo70 exocyst complex subunit","Exocyst complex component EXO70H1 OS=Arabidopsis thaliana OX=3702 GN=EXO70H1 PE=1 SV=1","S","Function unknown","PREDICTED: exocyst complex component EXO70A1 [Gossypium raimondii] "]
["c48421.graph_c1","--","--","--","--","--","--","XS domain;; XS zinc finger domain","Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana OX=3702 GN=SGS3 PE=1 SV=1","--","--","protein SUPPRESSOR OF GENE SILENCING 3-like [Durio zibethinus]"]
["c49396.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Biological Process: flower development (GO:0009908);; ","--","--","--","Auxin response factor;; B3 DNA binding domain;; AUX/IAA family","Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2","K","Transcription","auxin response factor 6-like isoform X1 [Durio zibethinus]"]
["c72337.graph_c0","[E]","Amino acid transport and metabolism ","Cellular Component: cytoplasm (GO:0005737);; Biological Process: arginine metabolic process (GO:0006525);; Biological Process: ornithine metabolic process (GO:0006591);; Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813);; Molecular Function: transition metal ion binding (GO:0046914);; ","--","[E]","Amino acid transport and metabolism ","Arginase family","Arginase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ARGAH1 PE=1 SV=1","E","Amino acid transport and metabolism","arginase [Allomyces macrogynus ATCC 38327]"]
["c43446.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD35146 [Gossypium barbadense]"]
["c49419.graph_c1","--",";; ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; Leucine rich repeat;; Leucine Rich repeats (2 copies)","Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1","S","Function unknown","PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Gossypium arboreum] "]
["c38371.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108475319 [Gossypium arboreum]"]
["c31059.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cellular bud neck (GO:0005935);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","--","--","--","Glucose-repressible protein Grg1","--","S","Function unknown","hypothetical protein AOL_s00004g152 [Arthrobotrys oligospora ATCC 24927] "]
["c164.graph_c0","--","--","--","--","--","--","LURP-one-related","Protein LURP-one-related 15 OS=Arabidopsis thaliana OX=3702 GN=At5g01750 PE=1 SV=1","S","Function unknown","PREDICTED: protein LURP-one-related 10-like isoform X3 [Gossypium raimondii] "]
["c71917.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: metacaspase-1-like [Gossypium arboreum]"]
["c8817.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: intracellular (GO:0005622);; Biological Process: transport (GO:0006810);; ","--","[I]","Lipid transport and metabolism ","CRAL/TRIO domain;; CRAL/TRIO, N-terminal domain","Phosphatidylinositol/phosphatidylcholine transfer protein SFH11 OS=Arabidopsis thaliana OX=3702 GN=SFH11 PE=3 SV=1","S","Function unknown","PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X1 [Gossypium raimondii]"]
["c40015.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","CAAD domains of cyanobacterial aminoacyl-tRNA synthetase","Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1","S","Function unknown","PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Fragaria vesca subsp. vesca]"]
["c69557.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; Biological Process: biosynthetic process (GO:0009058);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K20772|4.31499e-106|gra:105763853|K20772 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] | (RefSeq) 1-aminocyclopropane-1-carboxylate synthase-like","[T]","Signal transduction mechanisms ","Aminotransferase class I and II","1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum OX=4097 GN=ACS1 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like [Gossypium arboreum]"]
["c82422.graph_c0","--","--","--","--","[A]","RNA processing and modification ","Mediator of CRAC channel activity","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c89314.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: phosphoethanolamine N-methyltransferase activity (GO:0000234);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: phosphatidylcholine biosynthetic process (GO:0006656);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","K05929|5.03507e-68|osa:4339516|K05929 phosphoethanolamine N-methyltransferase [EC:2.1.1.103] | (RefSeq) phosphomethylethanolamine N-methyltransferase","[IR]","--","--","Phosphoethanolamine N-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=NMT3 PE=2 SV=2","S","Function unknown","PREDICTED: phosphomethylethanolamine N-methyltransferase [Oryza sativa Japonica Group] "]
["c40118.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; ","K11884|3.23747e-148|gra:105768612|K11884 RNA-binding protein PNO1 | (RefSeq) RNA-binding protein pno1-like","[O]","Posttranslational modification, protein turnover, chaperones ","KH domain","--","S","Function unknown","PREDICTED: RNA-binding protein pno1-like [Gossypium hirsutum] "]
["c83918.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","[I]","Lipid transport and metabolism ","--","--","I","Lipid transport and metabolism","hypothetical protein AMAG_14941 [Allomyces macrogynus ATCC 38327]"]
["c381.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","--","--","K","Transcription","PREDICTED: growth-regulating factor 3-like isoform X2 [Gossypium arboreum] "]
["c42683.graph_c0","--","--","Molecular Function: heme oxygenase (decyclizing) activity (GO:0004392);; Biological Process: heme oxidation (GO:0006788);; ","K00510|4.09342e-88|tcc:TCM_038078|K00510 heme oxygenase (biliverdin-producing) [EC:1.14.14.18] | (RefSeq) Plant heme oxygenase family protein isoform 1","[P]","Inorganic ion transport and metabolism ","Heme oxygenase","Heme oxygenase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HO1 PE=1 SV=2","P","Inorganic ion transport and metabolism","hypothetical protein GOBAR_DD26435 [Gossypium barbadense]"]
["c84746.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: mitotic spindle assembly checkpoint (GO:0007094);; Cellular Component: RZZ complex (GO:1990423);; ","--","--","--","--","--","S","Function unknown","similar to centromere/kinetochore protein zw10 [Botrytis cinerea T4] "]
["c27950.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine Rich repeat;; Leucine rich repeat N-terminal domain","Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana OX=3702 GN=PSY1R PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD26786 [Gossypium barbadense] "]
["c46591.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrial matrix (GO:0005759);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: protein refolding (GO:0042026);; ","K04077|0|gra:105800341|K04077 chaperonin GroEL | (RefSeq) chaperonin CPN60-2, mitochondrial","[O]","Posttranslational modification, protein turnover, chaperones ","TCP-1/cpn60 chaperonin family","Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima OX=3661 GN=CPN60-2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: chaperonin CPN60-2, mitochondrial [Gossypium hirsutum]"]
["c21708.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Tropomyosin;; Tropomyosin like","--","Z","Cytoskeleton","--"]
["c50218.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","protein PHLOEM PROTEIN 2-LIKE A10 [Herrania umbratica]"]
["c87840.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; ","K07513|9.90206e-15|cam:101499192|K07513 acetyl-CoA acyltransferase 1 [EC:2.3.1.16] | (RefSeq) 3-ketoacyl-CoA thiolase 2, peroxisomal-like","[I]","Lipid transport and metabolism ","Thiolase, N-terminal domain","3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=KAT1 PE=1 SV=2","I","Lipid transport and metabolism","3-ketoacyl-CoA thiolase 2, peroxisomal-like [Arachis duranensis]"]
["c7094.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Protein PRD1 OS=Arabidopsis thaliana OX=3702 GN=PRD1 PE=1 SV=3","S","Function unknown","hypothetical protein GOBAR_AA16564 [Gossypium barbadense]"]
["c55520.graph_c0","--","--","Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: fructose 1,6-bisphosphate 1-phosphatase activity (GO:0042132);; ","K03841|6.11568e-16|bna:106437677|K03841 fructose-1,6-bisphosphatase I [EC:3.1.3.11] | (RefSeq) fructose-1,6-bisphosphatase, cytosolic","[G]","Carbohydrate transport and metabolism ","--","Fructose-1,6-bisphosphatase, cytosolic OS=Arabidopsis thaliana OX=3702 GN=CYFBP PE=1 SV=1","G","Carbohydrate transport and metabolism","BnaC08g46760D [Brassica napus]"]
["c48368.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","Ring finger domain;; zinc-RING finger domain;; Prokaryotic RING finger family 4;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; RING-H2 zinc finger domain;; RING-type zinc-finger","ERAD-associated E3 ubiquitin-protein ligase HRD1B OS=Arabidopsis thaliana OX=3702 GN=HRD1B PE=2 SV=1","S","Function unknown","hypothetical protein B456_005G001700 [Gossypium raimondii]"]
["c16747.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","X8 domain","Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=1 SV=1","S","Function unknown","PREDICTED: glucan endo-1,3-beta-glucosidase 13 isoform X1 [Gossypium raimondii] "]
["c18496.graph_c0","--","--","--","--","--","--","S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)","--","--","--","Uncharacterized protein TCM_025700 [Theobroma cacao]"]
["c72193.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: response to light stimulus (GO:0009416);; Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting in photosystem I (GO:0009768);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: pigment binding (GO:0031409);; Molecular Function: metal ion binding (GO:0046872);; ","K08910|1.62208e-67|osa:4345663|K08910 light-harvesting complex I chlorophyll a/b binding protein 4 | (RefSeq) Cab27; chlorophyll a-b binding protein P4, chloroplastic","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1","S","Function unknown","PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Oryza sativa Japonica Group] "]
["c56593.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: response to salt stress (GO:0009651);; ","--","[Z]","Cytoskeleton ","--","--","K","Transcription","hypothetical protein B456_009G219300 [Gossypium raimondii]"]
["c5710.graph_c0","[V]","Defense mechanisms ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: nuclease activity (GO:0004518);; Biological Process: DNA repair (GO:0006281);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","--","--","--","Beta-lactamase","--","V","Defense mechanisms","hypothetical protein SNOG_10327 [Parastagonospora nodorum SN15] "]
["c92822.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein kinase activity (GO:0004672);; Biological Process: signal transduction (GO:0007165);; Biological Process: phosphorylation (GO:0016310);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; ","--","[T]","Signal transduction mechanisms ","Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase","Ethylene receptor OS=Nicotiana tabacum OX=4097 GN=ETR1 PE=2 SV=1","T","Signal transduction mechanisms","Peroxide stress-activated histidine kinase mak2 [Choanephora cucurbitarum]"]
["c86523.graph_c0","[X]","Mobilome: prophages, transposons","--","--","--","--","Winged helix-turn helix","--","L","Replication, recombination and repair","--"]
["c70075.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; ","K09489|2.73488e-14|tcc:TCM_028691|K09489 heat shock 70kDa protein 4 | (RefSeq) Heat shock protein 91 isoform 1","[O]","Posttranslational modification, protein turnover, chaperones ","--","Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana OX=3702 GN=HSP70-15 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Heat shock protein 91 isoform 2 [Theobroma cacao]"]
["c44511.graph_c0","[G]","Carbohydrate transport and metabolism ","Cellular Component: phosphopyruvate hydratase complex (GO:0000015);; Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: phosphopyruvate hydratase activity (GO:0004634);; Biological Process: glycolytic process (GO:0006096);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: trichome morphogenesis (GO:0010090);; ","K01689|0|gra:105788505|K01689 enolase [EC:4.2.1.11] | (RefSeq) enolase 1, chloroplastic","[G]","Carbohydrate transport and metabolism ","Enolase, C-terminal TIM barrel domain;; Enolase, N-terminal domain;; Enolase C-terminal domain-like;; Methylaspartate ammonia-lyase C-terminus","Enolase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ENO1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: enolase 1, chloroplastic [Gossypium arboreum] "]
["c95440.graph_c0","[CHR]","Energy production and conversion ;; Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: oxidoreductase activity (GO:0016491);; ","K00049|9.28438e-09|gsl:Gasu_47310|K00049 glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] | (RefSeq) glyoxylate reductase/hydroxypyruvate reductase","[C]","Energy production and conversion ","D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain","--","C","Energy production and conversion","hypothetical protein RO3G_10331 [Rhizopus delemar RA 99-880]"]
["c39830.graph_c0","--","--","--","--","--","--","--","B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1","S","Function unknown","PREDICTED: zinc finger protein CONSTANS-LIKE 1-like [Gossypium arboreum] "]
["c41127.graph_c0","[R]","General function prediction only ","Biological Process: lipid catabolic process (GO:0016042);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[I]","Lipid transport and metabolism ","Patatin-like phospholipase","Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1","S","Function unknown","patatin-like protein 2 [Durio zibethinus]"]
["c22776.graph_c1","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K08835|4.68723e-29|gra:105798317|K08835 serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase BLUS1-like","--","--","--","--","T","Signal transduction mechanisms","hypothetical protein CCACVL1_25039 [Corchorus capsularis]"]
["c26655.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","[S]","Function unknown ","Armadillo/beta-catenin-like repeat;; U-box domain","U-box domain-containing protein 43 OS=Arabidopsis thaliana OX=3702 GN=PUB43 PE=2 SV=1","S","Function unknown","PREDICTED: U-box domain-containing protein 44-like [Gossypium arboreum]"]
["c69800.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Citrus sinensis]"]
["c58760.graph_c0","--","--","--","K11374|3.38154e-18|gra:105776146|K11374 elongator complex protein 2 | (RefSeq) elongator complex protein 2","[BK]","--","--","Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1","S","Function unknown","elongator complex protein 2 [Herrania umbratica]"]
["c20613.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","--","--","--","Probable methyltransferase PMT2 OS=Arabidopsis thaliana OX=3702 GN=At1g26850 PE=2 SV=2","S","Function unknown","PREDICTED: probable methyltransferase PMT2 [Solanum pennellii] "]
["c49458.graph_c1","--","--","--","--","--","--","--","--","--","--","PREDICTED: light-inducible protein CPRF2-like [Gossypium raimondii] "]
["c37583.graph_c0","[R]","General function prediction only ","--","--","[B]","Chromatin structure and dynamics ","Tetratricopeptide repeat;; Tetratricopeptide repeat;; TPR repeat","TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana OX=3702 GN=TTL4 PE=2 SV=1","S","Function unknown","PREDICTED: SET and MYND domain-containing protein 4 isoform X1 [Gossypium hirsutum]"]
["c74607.graph_c0","[X]","Mobilome: prophages, transposons","--","--","[R]","General function prediction only ","Integrase core domain","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","hypothetical protein F511_32729 [Dorcoceras hygrometricum]"]
["c33089.graph_c0","--","--","--","K04733|2.15113e-152|gra:105793105|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) probable receptor-like protein kinase At1g49730","[T]","Signal transduction mechanisms ","Protein tyrosine kinase","Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana OX=3702 GN=At1g49730 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: probable receptor-like protein kinase At1g49730 [Gossypium hirsutum]"]
["c36849.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Peptidase inhibitor I9;; Subtilase family","Subtilisin-like protease SBT1.9 OS=Arabidopsis thaliana OX=3702 GN=SBT1.9 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.9 [Gossypium hirsutum]"]
["c88994.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water (GO:0016717);; Biological Process: oxidation-reduction process (GO:0055114);; ","K10256|1.25368e-30|mdm:103421758|K10256 omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase) [EC:1.14.19.6 1.14.19.22] | (RefSeq) delta(12)-fatty-acid desaturase FAD2-like","--","--","--","Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max OX=3847 GN=FAD2-2 PE=2 SV=1","I","Lipid transport and metabolism","omega-6 fatty acid desaturase, partial [Phaseolus vulgaris]"]
["c72259.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","K05349|1.19323e-103|fve:101301952|K05349 beta-glucosidase [EC:3.2.1.21] | (RefSeq) lysosomal beta glucosidase-like","--","--","Glycosyl hydrolase family 3 N terminal domain","Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia OX=36902 GN=Xyl2 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: lysosomal beta glucosidase-like [Fragaria vesca subsp. vesca]"]
["c71469.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111318276 [Durio zibethinus]"]
["c49214.graph_c2","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC110795400 [Spinacia oleracea]"]
["c42839.graph_c0","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Biological Process: metabolic process (GO:0008152);; Molecular Function: terpene synthase activity (GO:0010333);; ","--","--","--","Terpene synthase family, metal binding domain;; Terpene synthase, N-terminal domain","Probable terpene synthase 6 OS=Ricinus communis OX=3988 GN=TPS6 PE=3 SV=1","S","Function unknown","PREDICTED: probable terpene synthase 6 [Gossypium arboreum]"]
["c29079.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein CISIN_1g008059mg [Citrus sinensis]"]
["c48550.graph_c0","[P]","Inorganic ion transport and metabolism ","--","K01530|0|gra:105779792|K01530 phospholipid-translocating ATPase [EC:3.6.3.1] | (RefSeq) putative phospholipid-transporting ATPase 8","[R]","General function prediction only ","Phospholipid-translocating ATPase N-terminal;; Cation transport ATPase (P-type);; E1-E2 ATPase;; Phospholipid-translocating P-type ATPase C-terminal","Probable phospholipid-transporting ATPase 8 OS=Arabidopsis thaliana OX=3702 GN=ALA8 PE=3 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: probable phospholipid-transporting ATPase 8 [Gossypium arboreum] "]
["c18608.graph_c0","--","--","Biological Process: DNA replication (GO:0006260);; ","K04802|9.22175e-15|gra:105788736|K04802 proliferating cell nuclear antigen | (RefSeq) proliferating cell nuclear antigen","[L]","Replication, recombination and repair ","Proliferating cell nuclear antigen, C-terminal domain","Proliferating cell nuclear antigen OS=Nicotiana tabacum OX=4097 GN=PCNA PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein GOBAR_DD13326 [Gossypium barbadense]"]
["c21599.graph_c0","--","--","Biological Process: regulation of biological process (GO:0050789);; Biological Process: nucleic acid-templated transcription (GO:0097659);; ","--","--","--","Myb-like DNA-binding domain","Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 SV=2","S","Function unknown","PREDICTED: myb family transcription factor EFM-like [Gossypium arboreum]"]
["c29781.graph_c0","[D]","Cell cycle control, cell division, chromosome partitioning ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: cell division (GO:0051301);; ","K03531|2.1886e-145|gra:105790016|K03531 cell division protein FtsZ | (RefSeq) ferredoxin, root R-B2-like","--","--","FtsZ family, C-terminal domain;; Tubulin/FtsZ family, GTPase domain","Cell division protein FtsZ homolog 2-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSZ2-2 PE=1 SV=1","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein B456_004G009800 [Gossypium raimondii]"]
["c49663.graph_c0","--","--","--","K10400|0|gra:105768338|K10400 kinesin family member 15 | (RefSeq) phragmoplast orienting kinesin 2","[Z]","Cytoskeleton ","--","Kinesin-like protein KIN-12E OS=Arabidopsis thaliana OX=3702 GN=KIN12E PE=3 SV=1","Z","Cytoskeleton","hypothetical protein B456_009G081900 [Gossypium raimondii]"]
["c57514.graph_c0","--","--","--","K12820|5.78273e-12|gra:105764042|K12820 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13] | (RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase","[A]","RNA processing and modification ","--","Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 OS=Arabidopsis thaliana OX=3702 GN=At2g47250 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein GOBAR_DD16570 [Gossypium barbadense]"]
["c6911.graph_c0","--","--","--","--","--","--","NPH3 family","BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana OX=3702 GN=At3g22104 PE=2 SV=1","S","Function unknown","PREDICTED: BTB/POZ domain-containing protein At3g22104 isoform X2 [Gossypium arboreum]"]
["c59049.graph_c0","--","--","Molecular Function: 1,4-alpha-glucan branching enzyme activity (GO:0003844);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: glycogen biosynthetic process (GO:0005978);; Molecular Function: cation binding (GO:0043169);; ","K00700|1.77089e-17|gra:105766711|K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] | (RefSeq) 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic-like","[G]","Carbohydrate transport and metabolism ","--","1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic OS=Pisum sativum OX=3888 GN=SBEI PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein B456_009G406400 [Gossypium raimondii]"]
["c34355.graph_c1","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[T]","Signal transduction mechanisms ","--","Probable serine/threonine-protein kinase PBL7 OS=Arabidopsis thaliana OX=3702 GN=PBL7 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase CDL1-like [Gossypium hirsutum]"]
["c51168.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: triglyceride lipase activity (GO:0004806);; Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: phosphatidylcholine 1-acylhydrolase activity (GO:0008970);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: galactolipase activity (GO:0047714);; ","--","[I]","Lipid transport and metabolism ","Lipase (class 3)","Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g16820 PE=1 SV=2","S","Function unknown","PREDICTED: phospholipase A1-Ibeta2, chloroplastic-like [Gossypium arboreum]"]
["c10124.graph_c0","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K00891|3.90957e-51|gra:105765516|K00891 shikimate kinase [EC:2.7.1.71] | (RefSeq) shikimate kinase 1, chloroplastic-like","--","--","--","Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: shikimate kinase 1, chloroplastic-like isoform X1 [Gossypium raimondii]"]
["c26363.graph_c2","--","--","--","K20241|1.4868e-41|tcc:TCM_021948|K20241 WD repeat-containing protein 44 | (RefSeq) Transducin/WD40 repeat-like superfamily protein, putative","[S]","Function unknown ","--","--","S","Function unknown","uncharacterized protein LOC111294925 [Durio zibethinus]"]
["c1123.graph_c0","--","--","Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; ","--","[P]","Inorganic ion transport and metabolism ","Heavy-metal-associated domain","Heavy metal-associated isoprenylated plant protein 20 OS=Arabidopsis thaliana OX=3702 GN=HIPP20 PE=1 SV=1","S","Function unknown","heavy metal-associated isoprenylated plant protein 20-like [Quercus suber]"]
["c51075.graph_c0","[S]","Function unknown ","Biological Process: metabolic process (GO:0008152);; Molecular Function: carbon-sulfur lyase activity (GO:0016846);; ","--","--","--","Glutathione-dependent formaldehyde-activating enzyme","--","S","Function unknown","hypothetical protein IQ06DRAFT_343602 [Stagonospora sp. SRC1lsM3a]"]
["c82397.graph_c0","--","--","--","K13993|2.87483e-25|gra:105769642|K13993 HSP20 family protein | (RefSeq) 17.3 kDa class I heat shock protein","[O]","Posttranslational modification, protein turnover, chaperones ","--","17.8 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein COLO4_19166 [Corchorus olitorius]"]
["c43737.graph_c0","[E]","Amino acid transport and metabolism ","Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: polyamine transport (GO:0015846);; Molecular Function: polyamine binding (GO:0019808);; Cellular Component: periplasmic space (GO:0042597);; ","--","--","--","Bacterial extracellular solute-binding protein;; Bacterial extracellular solute-binding protein","--","E","Amino acid transport and metabolism","hypothetical protein B456_004G175600 [Gossypium raimondii]"]
["c87383.graph_c0","--","--","--","--","--","--","Fasciclin domain","Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: fasciclin-like arabinogalactan protein 1 [Fragaria vesca subsp. vesca]"]
["c37627.graph_c0","[C]","Energy production and conversion ","Biological Process: phenylpropanoid biosynthetic process (GO:0009699);; Molecular Function: coniferyl-aldehyde dehydrogenase activity (GO:0050269);; Biological Process: oxidation-reduction process (GO:0055114);; ","K12355|0|gra:105769191|K12355 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] | (RefSeq) aldehyde dehydrogenase family 2 member C4-like","[C]","Energy production and conversion ","Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2","C","Energy production and conversion","PREDICTED: aldehyde dehydrogenase family 2 member C4-like [Gossypium arboreum]"]
["c48636.graph_c1","[R]","General function prediction only ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Cellular Component: plastid (GO:0009536);; Molecular Function: phospholipase activator activity (GO:0016004);; Cellular Component: integral component of membrane (GO:0016021);; ","K07937|5.22758e-127|sind:105168984|K07937 ADP-ribosylation factor 1 | (RefSeq) ADP-ribosylation factor 1","[U]","Intracellular trafficking, secretion, and vesicular transport ","ADP-ribosylation factor family;; Ras of Complex, Roc, domain of DAPkinase;; Signal recognition particle receptor beta subunit;; Ras family;; Gtr1/RagA G protein conserved region;; 50S ribosome-binding GTPase","ADP-ribosylation factor 2-B OS=Arabidopsis thaliana OX=3702 GN=ARF2-B PE=2 SV=1","S","Function unknown","unnamed protein product, partial [Vitis vinifera]"]
["c47285.graph_c0","--","--","Cellular Component: spindle pole (GO:0000922);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule organizing center (GO:0005815);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule nucleation (GO:0007020);; Molecular Function: gamma-tubulin binding (GO:0043015);; ","K16570|0|tcc:TCM_024946|K16570 gamma-tubulin complex component 3 | (RefSeq) Spindle pole body component 98 isoform 1","[Z]","Cytoskeleton ","Spc97 / Spc98 family;; Reverse transcriptase-like;; zinc-binding in reverse transcriptase","Gamma-tubulin complex component 3 OS=Arabidopsis thaliana OX=3702 GN=GCP3 PE=1 SV=1","S","Function unknown","Spc97/Spc98 [Corchorus olitorius]"]
["c49783.graph_c0","--","--","--","--","[BK]","--","DDT domain;; PHD-finger;; WSTF, HB1, Itc1p, MBD9 motif 1","DDT domain-containing protein PTM OS=Arabidopsis thaliana OX=3702 GN=PTM PE=1 SV=1","S","Function unknown","PREDICTED: DDT domain-containing protein PTM-like [Gossypium arboreum]"]
["c26140.graph_c1","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|1.49156e-134|gra:105800866|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 45-like","--","--","Peroxidase","Peroxidase 16 OS=Arabidopsis thaliana OX=3702 GN=PER16 PE=1 SV=2","S","Function unknown","PREDICTED: peroxidase 45-like [Gossypium hirsutum]"]
["c6051.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich repeat;; Leucine Rich Repeat","Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana OX=3702 GN=At1g74360 PE=1 SV=1","S","Function unknown","probable LRR receptor-like serine/threonine-protein kinase At1g74360 [Durio zibethinus]"]
["c88687.graph_c0","[F]","Nucleotide transport and metabolism ","--","--","[FP]","--","Na+ dependent nucleoside transporter C-terminus","--","--","--","Na+ dependent nucleoside transporter C-terminus-domain-containing protein [Catenaria anguillulae PL171]"]
["c41695.graph_c1","[T]","Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter","ABC transporter G family member 29 OS=Arabidopsis thaliana OX=3702 GN=ABCG29 PE=2 SV=2","V","Defense mechanisms","ABC transporter G family member 36-like protein, partial [Trifolium pratense]"]
["c63602.graph_c0","--","--","--","--","--","--","PLATZ transcription factor","Uncharacterized protein At3g50808 OS=Arabidopsis thaliana OX=3702 GN=At3g50808 PE=4 SV=1","--","--","uncharacterized protein At3g50808-like [Durio zibethinus]"]
["c33995.graph_c0","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: membrane part (GO:0044425);; ","--","--","--","--","--","--","--","reticulon-like protein B13 [Durio zibethinus]"]
["c88346.graph_c0","--","--","Molecular Function: protein binding (GO:0005515);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: photosystem I reaction center (GO:0009538);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: photosynthesis, light reaction (GO:0019684);; Cellular Component: chloroplast membrane (GO:0031969);; Biological Process: meiotic cell cycle (GO:0051321);; ","K02699|4.25786e-42|ath:AT4G12800|K02699 photosystem I subunit XI | (RefSeq) PSAL; photosystem I subunit l","--","--","Photosystem I reaction centre subunit XI","Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAL PE=1 SV=2","C","Energy production and conversion","photosystem I subunit XI precursor [Arabidopsis thaliana]"]
["c55818.graph_c0","--","--","Biological Process: cell division (GO:0051301);; ","--","--","--","--","--","--","--","Cell division FtsY [Gossypium arboreum]"]
["c45579.graph_c1","--","--","--","--","--","--","--","Type 2 DNA topoisomerase 6 subunit B-like OS=Arabidopsis thaliana OX=3702 GN=MTOPVIB PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA13426 [Gossypium barbadense]"]
["c23067.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Biological Process: glucose import (GO:0046323);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","[R]","General function prediction only ","Sugar (and other) transporter;; Major Facilitator Superfamily","Sugar transport protein 8 OS=Arabidopsis thaliana OX=3702 GN=STP8 PE=2 SV=2","G","Carbohydrate transport and metabolism","sugar transport protein 8-like [Olea europaea var. sylvestris]"]
["c21749.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Transcription factor MYBS3 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS3 PE=2 SV=1","--","--","transcription factor MYBS3 [Arachis ipaensis]"]
["c53738.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA11419 [Gossypium barbadense]"]
["c85349.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC101307410 [Fragaria vesca subsp. vesca]"]
["c6265.graph_c0","--","--","--","--","[E]","Amino acid transport and metabolism ","--","Lysine histidine transporter-like 8 OS=Arabidopsis thaliana OX=3702 GN=AATL1 PE=1 SV=1","E","Amino acid transport and metabolism","uncharacterized protein A4U43_C08F14490 [Asparagus officinalis]"]
["c94135.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c60192.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","--","--","--","--","--","PREDICTED: FT-interacting protein 1 [Theobroma cacao]"]
["c57232.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_022485 [Theobroma cacao]"]
["c29993.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF3128)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105799183 [Gossypium raimondii] "]
["c41291.graph_c0","[C]","Energy production and conversion ","Cellular Component: intracellular part (GO:0044424);; Cellular Component: membrane part (GO:0044425);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00412|3.83048e-67|bvg:809471|K00412 ubiquinol-cytochrome c reductase cytochrome b subunit | (RefSeq) cob, BevupMp069; apocytochrome B","[C]","Energy production and conversion ","--","Cytochrome b OS=Oryza sativa subsp. japonica OX=39947 GN=MT-CYB PE=2 SV=1","C","Energy production and conversion","apocytochrome b (mitochondrion) [Allomyces macrogynus] "]
["c25089.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; ","--","[DZ]","--","Translationally controlled tumour protein","Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 GN=TCTP PE=2 SV=1","S","Function unknown","translationally-controlled tumor protein [Rosa chinensis]"]
["c39972.graph_c0","--","--","--","--","[S]","Function unknown ","Uncharacterized conserved protein (DUF2039)","--","S","Function unknown","hypothetical protein B456_001G208500 [Gossypium raimondii]"]
["c47012.graph_c0","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: NuA4 histone acetyltransferase complex (GO:0035267);; ","--","[K]","Transcription ","Enhancer of polycomb-like","--","K","Transcription","hypothetical protein GOBAR_DD30864 [Gossypium barbadense]"]
["c72641.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108481632 [Gossypium arboreum]"]
["c55761.graph_c0","--","--","--","--","--","--","PB1 domain","--","S","Function unknown","uncharacterized protein LOC111317906 [Durio zibethinus] "]
["c93896.graph_c0","--","--","--","--","[V]","Defense mechanisms ","--","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c7653.graph_c0","--","--","--","--","--","--","--","--","L","Replication, recombination and repair","--"]
["c43986.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02969|2.58273e-80|tcc:TCM_014967|K02969 small subunit ribosomal protein S20e | (RefSeq) Ribosomal protein S10p/S20e family protein isoform 1","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S10p/S20e","40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S20-2 [Theobroma cacao] "]
["c56185.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","--","[F]","Nucleotide transport and metabolism ","--","Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana OX=3702 GN=NAT6 PE=2 SV=2","F","Nucleotide transport and metabolism","hypothetical protein B456_008G297500 [Gossypium raimondii]"]
["c46559.graph_c0","[S]","Function unknown ","--","--","[S]","Function unknown ","SNARE associated Golgi protein","Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana OX=3702 GN=At4g09580 PE=1 SV=1","S","Function unknown","hypothetical protein B456_005G074400 [Gossypium raimondii]"]
["c44263.graph_c0","--","--","--","--","[V]","Defense mechanisms ","--","--","S","Function unknown","PREDICTED: trichohyalin-like [Gossypium hirsutum]"]
["c71159.graph_c0","--","--","--","--","--","--","Fibronectin type III domain","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c90023.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein BCIN_08g06460 [Botrytis cinerea B05.10]"]
["c71369.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: organic anion transmembrane transporter activity (GO:0008514);; Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[GE]","--","--","Probable sugar phosphate/phosphate translocator At2g25520 OS=Arabidopsis thaliana OX=3702 GN=At2g25520 PE=1 SV=1","S","Function unknown","PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 [Gossypium raimondii] "]
["c50861.graph_c0","--","--","--","--","--","--","Dirigent-like protein","Disease resistance response protein 206 OS=Pisum sativum OX=3888 GN=PI206 PE=1 SV=2","S","Function unknown","Plant disease resistance response protein [Corchorus capsularis]"]
["c39007.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; ","--","[J]","Translation, ribosomal structure and biogenesis ","Helicase conserved C-terminal domain","DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1","L","Replication, recombination and repair","DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Durio zibethinus]"]
["c38511.graph_c0","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Biological Process: plant-type cell wall organization (GO:0009664);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Pollen allergen;; Lytic transglycolase","Expansin-A5 OS=Arabidopsis thaliana OX=3702 GN=EXPA5 PE=2 SV=1","--","--","expansin-A15-like isoform X1 [Manihot esculenta]"]
["c86238.graph_c0","--","--","--","--","--","--","Transferrin","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c43612.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: threonine-type endopeptidase activity (GO:0004298);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Cellular Component: proteasome core complex, alpha-subunit complex (GO:0019773);; ","K02728|1.84123e-165|gra:105802350|K02728 20S proteasome subunit alpha 3 [EC:3.4.25.1] | (RefSeq) proteasome subunit alpha type-4","[O]","Posttranslational modification, protein turnover, chaperones ","Proteasome subunit;; Proteasome subunit A N-terminal signature","Proteasome subunit alpha type-4 OS=Spinacia oleracea OX=3562 GN=PAC1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: proteasome subunit alpha type-4 [Gossypium raimondii] "]
["c31530.graph_c0","--","--","--","--","--","--","Nucleoplasmin/nucleophosmin domain","--","S","Function unknown","--"]
["c21712.graph_c0","--","--","Cellular Component: plant-type vacuole membrane (GO:0009705);; Molecular Function: malate transmembrane transporter activity (GO:0015140);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: malate transmembrane transport (GO:0071423);; ","--","[R]","General function prediction only ","Aluminium activated malate transporter","Aluminum-activated malate transporter 2 OS=Arabidopsis thaliana OX=3702 GN=ALMT2 PE=2 SV=2","S","Function unknown","hypothetical protein GOBAR_AA33269 [Gossypium barbadense]"]
["c45091.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","--","--","[I]","Lipid transport and metabolism ","alpha/beta hydrolase fold","--","S","Function unknown","hypothetical protein GOBAR_AA30006 [Gossypium barbadense]"]
["c65898.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: polyvinylalcohol dehydrogenase isoform X2 [Theobroma cacao]"]
["c46386.graph_c0","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","K07195|0|gra:105799625|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70A1","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exo70 exocyst complex subunit","Exocyst complex component EXO70A1 OS=Arabidopsis thaliana OX=3702 GN=EXO70A1 PE=1 SV=1","S","Function unknown","PREDICTED: exocyst complex component EXO70A1-like [Gossypium hirsutum]"]
["c45278.graph_c0","--","--","--","--","--","--","--","--","--","--","F-box family protein, putative [Theobroma cacao]"]
["c35011.graph_c1","[G]","Carbohydrate transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","[GC]","--","UDP-glucoronosyl and UDP-glucosyl transferase","UDP-glycosyltransferase 708C1 OS=Fagopyrum esculentum OX=3617 GN=UGT708C1 PE=1 SV=1","S","Function unknown","PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Gossypium raimondii] "]
["c33389.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: endonuclease activity (GO:0004519);; Biological Process: DNA catabolic process (GO:0006308);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","--","--","--","S1/P1 Nuclease;; S1/P1 Nuclease","Endonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=ENDO2 PE=1 SV=1","S","Function unknown","Endonuclease 2, 2 isoform 1 [Theobroma cacao]"]
["c29920.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: damaged DNA binding (GO:0003684);; Biological Process: base-excision repair (GO:0006284);; Biological Process: nucleotide-excision repair (GO:0006289);; Molecular Function: oxidized purine nucleobase lesion DNA N-glycosylase activity (GO:0008534);; ","K03660|1.83308e-169|gra:105770304|K03660 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] | (RefSeq) N-glycosylase/DNA lyase OGG1","[L]","Replication, recombination and repair ","8-oxoguanine DNA glycosylase, N-terminal domain;; HhH-GPD superfamily base excision DNA repair protein;; Helix-hairpin-helix motif","N-glycosylase/DNA lyase OGG1 OS=Arabidopsis thaliana OX=3702 GN=OGG1 PE=1 SV=1","L","Replication, recombination and repair","hypothetical protein GOBAR_DD02209 [Gossypium barbadense]"]
["c93017.graph_c0","--","--","Molecular Function: nuclease activity (GO:0004518);; Biological Process: macromolecule metabolic process (GO:0043170);; Biological Process: cellular metabolic process (GO:0044237);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: single-organism process (GO:0044699);; ","K01099|4.68818e-06|gsl:Gasu_32740|K01099 inositol polyphosphate 5-phosphatase INPP5B/F [EC:3.1.3.36] | (RefSeq) phosphatidylinositol-bisphosphatase","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","T","Signal transduction mechanisms","DNase I-like protein [Conidiobolus coronatus NRRL 28638]"]
["c45967.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc finger, C3HC4 type (RING finger);; Ring finger domain;; Zinc finger, C3HC4 type (RING finger)","E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC108476424 [Gossypium arboreum] "]
["c94849.graph_c0","[F]","Nucleotide transport and metabolism ","Biological Process: dephosphorylation (GO:0016311);; Molecular Function: phosphatase activity (GO:0016791);; ","K19269|1.88413e-40|fve:101294770|K19269 phosphoglycolate phosphatase [EC:3.1.3.18 3.1.3.48] | (RefSeq) phosphoglycolate phosphatase 1B, chloroplastic-like","[P]","Inorganic ion transport and metabolism ","Haloacid dehalogenase-like hydrolase","Phosphoglycolate phosphatase 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGLP1B PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic-like [Fragaria vesca subsp. vesca]"]
["c28492.graph_c0","--","--","--","--","[R]","General function prediction only ","GAG-pre-integrase domain;; gag-polypeptide of LTR copia-type;; gag-polypeptide of LTR copia-type","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC108468761 [Gossypium arboreum]"]
["c51268.graph_c0","--","--","--","--","--","--","Cotton fibre expressed protein","--","S","Function unknown","uncharacterized protein LOC111306039 [Durio zibethinus]"]
["c39096.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA replication (GO:0006260);; Cellular Component: DNA polymerase III complex (GO:0009360);; Biological Process: DNA biosynthetic process (GO:0071897);; ","--","[L]","Replication, recombination and repair ","--","Protein STICHEL-like 4 OS=Arabidopsis thaliana OX=3702 GN=At5g45720 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: protein STICHEL-like 3 [Gossypium arboreum] "]
["c46142.graph_c1","--","--","--","K15191|6.85157e-132|gra:105795269|K15191 La-related protein 7 | (RefSeq) la-related protein 6C","[R]","General function prediction only ","La domain","La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1","S","Function unknown","PREDICTED: la-related protein 6C [Gossypium raimondii] "]
["c42407.graph_c0","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","K07195|1.81754e-154|gra:105761817|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70A1-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exo70 exocyst complex subunit","Exocyst complex component EXO70H1 OS=Arabidopsis thaliana OX=3702 GN=EXO70H1 PE=1 SV=1","S","Function unknown","exocyst complex component EXO70A1-like [Herrania umbratica]"]
["c4950.graph_c0","--","--","--","K10523|1.19479e-08|obr:102715886|K10523 speckle-type POZ protein | (RefSeq) BTB/POZ and MATH domain-containing protein 1-like","[S]","Function unknown ","BTB/POZ domain","--","S","Function unknown","PREDICTED: BTB/POZ and MATH domain-containing protein 1-like [Oryza brachyantha]"]
["c1998.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: vinorine synthase-like [Gossypium hirsutum]"]
["c62237.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: pentose-phosphate shunt (GO:0006098);; Molecular Function: xylose isomerase activity (GO:0009045);; Biological Process: D-xylose metabolic process (GO:0042732);; Molecular Function: metal ion binding (GO:0046872);; ","K01805|6.33136e-51|gra:105772140|K01805 xylose isomerase [EC:5.3.1.5] | (RefSeq) xylose isomerase-like","--","--","--","Xylose isomerase OS=Arabidopsis thaliana OX=3702 GN=XYLA PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD34104 [Gossypium barbadense]"]
["c35499.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111302790 [Durio zibethinus]"]
["c8657.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA34646 [Gossypium barbadense]"]
["c65697.graph_c0","--","--","--","K19476|1.04639e-13|gra:105777935|K19476 vacuolar protein sorting-associated protein IST1 | (RefSeq) hypothetical protein","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105777935 isoform X2 [Gossypium raimondii]"]
["c17693.graph_c0","--","--","Biological Process: protein glycosylation (GO:0006486);; Molecular Function: fucosyltransferase activity (GO:0008417);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: Golgi cisterna membrane (GO:0032580);; Biological Process: fucosylation (GO:0036065);; ","K00753|3.72942e-88|tcc:TCM_007068|K00753 glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] | (RefSeq) Fucosyltransferase 11 isoform 3","[GE]","--","Glycosyltransferase family 10 (fucosyltransferase) C-term","Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana OX=3702 GN=FUT11 PE=1 SV=1","S","Function unknown","glycoprotein 3-alpha-L-fucosyltransferase A-like isoform X3 [Durio zibethinus]"]
["c42489.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein BVRB_037930, partial [Beta vulgaris subsp. vulgaris]"]
["c42761.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","NYN domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105788444 [Gossypium raimondii] "]
["c40861.graph_c1","--","--","Biological Process: flavonoid biosynthetic process (GO:0009813);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: flavonoid glucuronidation (GO:0052696);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; ","--","[GC]","--","UDP-glucoronosyl and UDP-glucosyl transferase","Linamarin synthase 2 OS=Manihot esculenta OX=3983 GN=UGT85K5 PE=1 SV=1","S","Function unknown","7-deoxyloganetin glucosyltransferase-like [Herrania umbratica]"]
["c77634.graph_c0","--","--","Molecular Function: SNARE binding (GO:0000149);; Molecular Function: SNAP receptor activity (GO:0005484);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to membrane (GO:0006612);; Biological Process: vesicle fusion (GO:0006906);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: SNARE complex (GO:0031201);; Biological Process: vesicle docking (GO:0048278);; ","K08506|6.28217e-41|mdm:103450064|K08506 syntaxin of plants SYP7 | (RefSeq) syntaxin-71-like","--","--","--","Syntaxin-71 OS=Arabidopsis thaliana OX=3702 GN=SYP71 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: syntaxin-71-like [Malus domestica]"]
["c63147.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: polyamine catabolic process (GO:0006598);; Molecular Function: polyamine oxidase activity (GO:0046592);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13366|4.35613e-83|tcc:TCM_005846|K13366 polyamine oxidase [EC:1.5.3.14 1.5.3.16 1.5.3.-] | (RefSeq) Polyamine oxidase 1 isoform 1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Flavin containing amine oxidoreductase","Polyamine oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=PAO1 PE=1 SV=1","S","Function unknown","polyamine oxidase 1-like isoform X2 [Durio zibethinus]"]
["c88196.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: small ribosomal subunit (GO:0015935);; ","K02985|7.31164e-24|bna:106391393|K02985 small subunit ribosomal protein S3e | (RefSeq) 40S ribosomal protein S3-2-like","[J]","Translation, ribosomal structure and biogenesis ","--","40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","ribosomal protein rps3 [Gonapodya prolifera JEL478]"]
["c45235.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: glutathione transferase activity (GO:0004364);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: translational elongation (GO:0006414);; Biological Process: glutathione metabolic process (GO:0006749);; ","K03233|7.74233e-161|tcc:TCM_006138|K03233 elongation factor 1-gamma | (RefSeq) Elongation factor 1-gamma 3 isoform 1","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor 1 gamma, conserved domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain","Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0220500 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: elongation factor 1-gamma 2 [Theobroma cacao] "]
["c44983.graph_c1","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","TPL-binding domain in jasmonate signalling","--","S","Function unknown","Zinc finger, PHD-type [Corchorus olitorius]"]
["c21296.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ligase activity (GO:0016874);; Biological Process: regulation of lipid catabolic process (GO:0050994);; ","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_006G172700 [Gossypium raimondii]"]
["c79346.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111311737 [Durio zibethinus]"]
["c43964.graph_c2","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC105779313 isoform X2 [Gossypium raimondii]"]
["c36017.graph_c0","[T]","Signal transduction mechanisms ","--","--","--","--","Universal stress protein family","--","T","Signal transduction mechanisms","PREDICTED: uncharacterized protein LOC105766593 isoform X1 [Gossypium raimondii]"]
["c66123.graph_c0","--","--","--","--","--","--","Aluminium activated malate transporter","--","S","Function unknown","PREDICTED: aluminum-activated malate transporter 4-like [Gossypium arboreum]"]
["c548.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|5.61022e-32|crb:CARUB_v10004873mg|K09422 myb proto-oncogene protein, plant | (RefSeq) hypothetical protein","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1","K","Transcription","PREDICTED: transcription factor MYB122-like [Raphanus sativus]"]
["c349.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; ","--","--","--","Glycosyl hydrolase family 3 C-terminal domain;; Fibronectin type III-like domain","Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BXL2 PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD09354 [Gossypium barbadense]"]
["c24567.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; ","--","--","--","Peptidase inhibitor I9","Subtilisin-like protease SBT4.3 OS=Arabidopsis thaliana OX=3702 GN=SBT4.3 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: cucumisin-like [Gossypium hirsutum]"]
["c7997.graph_c0","--","--","Molecular Function: acetylglucosaminyltransferase activity (GO:0008375);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Core-2/I-Branching enzyme","--","--","--","PREDICTED: uncharacterized protein LOC108472515 isoform X2 [Gossypium arboreum]"]
["c68403.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Ycf1","Protein TIC 214 OS=Lobularia maritima OX=226051 GN=TIC214 PE=3 SV=1","S","Function unknown","Ycf1, partial (chloroplast) [Erythroxylum sp. CD-2013]"]
["c5202.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","[T]","Signal transduction mechanisms ","Granulin","Oryzain beta chain OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0670200 PE=1 SV=2","S","Function unknown","hypothetical protein CUMW_045360 [Citrus unshiu]"]
["c48378.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|0|gra:105764617|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) protein NRT1/ PTR FAMILY 4.6","[E]","Amino acid transport and metabolism ","POT family","Protein NRT1/ PTR FAMILY 4.6 OS=Arabidopsis thaliana OX=3702 GN=NPF4.6 PE=1 SV=1","E","Amino acid transport and metabolism","protein NRT1/ PTR FAMILY 4.6-like [Durio zibethinus]"]
["c38504.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","CrcB-like protein, Camphor Resistance (CrcB)","--","S","Function unknown","PREDICTED: UPF0695 membrane protein C977.11/PB8B6.06c [Gossypium hirsutum] "]
["c26707.graph_c0","--","--","Molecular Function: prenyltransferase activity (GO:0004659);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Ferritin-like domain","--","S","Function unknown","hypothetical protein IQ06DRAFT_311067 [Stagonospora sp. SRC1lsM3a]"]
["c87696.graph_c0","--","--","Molecular Function: catalase activity (GO:0004096);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","--","--","--","--","--","IQ","--","PREDICTED: uncharacterized protein LOC107959325 [Gossypium hirsutum]"]
["c46447.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Myosin-like coiled-coil protein;; Myosin-like coiled-coil protein","--","S","Function unknown","hypothetical protein B456_012G094400 [Gossypium raimondii]"]
["c46030.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; Pentatricopeptide repeat domain;; PPR repeat;; Pentacotripeptide-repeat region of PRORP;; Evolutionarily conserved signalling intermediate in Toll pathway;; Region in Clathrin and VPS;; Tetratricopeptide repeat;; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g39980 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic-like [Gossypium hirsutum]"]
["c63920.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; Retroviral aspartyl protease","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107956087 [Gossypium hirsutum]"]
["c41589.graph_c0","--","--","Molecular Function: Rho GDP-dissociation inhibitor activity (GO:0005094);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: regulation of catalytic activity (GO:0050790);; ","K12462|2.59083e-108|gra:105802724|K12462 Rho GDP-dissociation inhibitor | (RefSeq) rho GDP-dissociation inhibitor 1-like","[T]","Signal transduction mechanisms ","RHO protein GDP dissociation inhibitor","Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: rho GDP-dissociation inhibitor 1-like [Gossypium arboreum] "]
["c69724.graph_c0","--","--","Biological Process: dephosphorylation (GO:0016311);; Molecular Function: phosphatase activity (GO:0016791);; ","K13248|4.32847e-30|gra:105777740|K13248 pyridoxal phosphate phosphatase PHOSPHO2 [EC:3.1.3.74] | (RefSeq) inorganic pyrophosphatase 2-like","--","--","--","--","S","Function unknown","PREDICTED: inorganic pyrophosphatase 2-like [Gossypium hirsutum]"]
["c39951.graph_c0","--","--","--","--","--","--","--","Tobamovirus multiplication protein 2B OS=Arabidopsis thaliana OX=3702 GN=TOM2B PE=2 SV=2","S","Function unknown","hypothetical protein B456_006G215800 [Gossypium raimondii]"]
["c24933.graph_c0","--","--","--","--","[S]","Function unknown ","TLD","--","S","Function unknown","hypothetical protein GOBAR_AA02077 [Gossypium barbadense]"]
["c87875.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: early light-induced protein 1, chloroplastic-like [Fragaria vesca subsp. vesca]"]
["c45851.graph_c0","[G]","Carbohydrate transport and metabolism ","--","K00975|0|gra:105800497|K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] | (RefSeq) glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic","[M]","Cell wall/membrane/envelope biogenesis ","Nucleotidyl transferase;; Nucleotidyl transferase","Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ADG2 PE=1 SV=3","G","Carbohydrate transport and metabolism","PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic isoform X1 [Gossypium hirsutum]"]
["c33938.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111284185 [Durio zibethinus]"]
["c18987.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Probable lipid transfer;; Protease inhibitor/seed storage/LTP family","Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1","S","Function unknown","PREDICTED: protein YLS3 isoform X2 [Theobroma cacao] "]
["c25843.graph_c0","--","--","--","--","--","--","Intermediate filament protein","--","Z","Cytoskeleton","--"]
["c57207.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Molecular Function: glucuronosyltransferase activity (GO:0015020);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: xylan biosynthetic process (GO:0045492);; ","K20890|2.06576e-35|tcc:TCM_035450|K20890 xylan alpha-glucuronosyltransferase [EC:2.4.1.-] | (RefSeq) Plant glycogenin-like starch initiation protein 2 isoform 1","[G]","Carbohydrate transport and metabolism ","--","Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GUX3 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Plant glycogenin-like starch initiation protein 2 isoform 1 [Theobroma cacao]"]
["c11136.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: amino acid catabolic process to alcohol via Ehrlich pathway (GO:0000947);; Molecular Function: alcohol dehydrogenase (NAD) activity (GO:0004022);; Cellular Component: mitochondrial matrix (GO:0005759);; Biological Process: ethanol catabolic process (GO:0006068);; Biological Process: NADH oxidation (GO:0006116);; Biological Process: threonine catabolic process (GO:0006567);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: ethanol biosynthetic process involved in glucose fermentation to ethanol (GO:0043458);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Zinc-binding dehydrogenase","--","C","Energy production and conversion","oxidoreductase [Ascochyta rabiei]"]
["c53025.graph_c0","--","--","--","K13899|8.24745e-16|tcc:TCM_020180|K13899 cystatin-C | (RefSeq) Cystatin","--","--","Aspartic acid proteinase inhibitor;; Cystatin domain","Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0270100 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD23114 [Gossypium barbadense]"]
["c49441.graph_c1","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: proteasome regulatory particle, base subcomplex (GO:0008540);; Molecular Function: TBP-class protein binding (GO:0017025);; Biological Process: ubiquitin-dependent ERAD pathway (GO:0030433);; Cellular Component: nuclear proteasome complex (GO:0031595);; Cellular Component: cytosolic proteasome complex (GO:0031597);; Molecular Function: proteasome-activating ATPase activity (GO:0036402);; Biological Process: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly (GO:0045899);; Biological Process: positive regulation of proteasomal protein catabolic process (GO:1901800);; ","K03064|0|mtr:MTR_3g112260|K03064 26S proteasome regulatory subunit T4 | (RefSeq) 26S proteasome regulatory particle triple-A ATPase protein","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA);; TLC domain;; TLC domain","26S proteasome regulatory subunit 10B homolog A OS=Arabidopsis thaliana OX=3702 GN=RPT4A PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","26S proteasome regulatory particle triple-A ATPase protein [Medicago truncatula] "]
["c49592.graph_c0","--","--","--","K07195|0|gra:105764785|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70B1-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exo70 exocyst complex subunit","Exocyst complex component EXO70B1 OS=Arabidopsis thaliana OX=3702 GN=EXO70B1 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD06748 [Gossypium barbadense]"]
["c74137.graph_c0","--","--","Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02891|1.42495e-24|sita:101780277|K02891 large subunit ribosomal protein L22e | (RefSeq) 60S ribosomal protein L22-2-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L22e protein family","60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","60s ribosomal protein l22 [Chrysochromulina sp. CCMP291]"]
["c34768.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Mitochondrial 28S ribosomal protein S27","Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD25667 [Gossypium barbadense]"]
["c36770.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Biological Process: transcription, DNA-templated (GO:0006351);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 27 OS=Arabidopsis thaliana OX=3702 GN=GATA27 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA05125 [Gossypium barbadense]"]
["c20412.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA32549 [Gossypium barbadense]"]
["c38582.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105799804 [Gossypium raimondii] "]
["c43707.graph_c0","--","--","--","--","--","--","zinc-finger of the FCS-type, C2-C2","Protein MARD1 OS=Arabidopsis thaliana OX=3702 GN=MARD1 PE=2 SV=2","S","Function unknown","hypothetical protein GOBAR_AA05402 [Gossypium barbadense]"]
["c16734.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02914|5.10075e-69|tcc:TCM_029722|K02914 large subunit ribosomal protein L34 | (RefSeq) 50S ribosomal protein L34","--","--","Ribosomal protein L34","50S ribosomal protein L34, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL34 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 50S ribosomal protein L34, chloroplastic [Theobroma cacao] "]
["c32261.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","--","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 35 isoform X2 [Gossypium hirsutum]"]
["c69301.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c44508.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Eukaryotic aspartyl protease;; Xylanase inhibitor C-terminal","Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g65240 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","aspartic proteinase-like protein 2 [Herrania umbratica]"]
["c20467.graph_c0","--","--","--","K02150|1.11638e-13|osa:4339122|K02150 V-type H+-transporting ATPase subunit E | (RefSeq) V-type proton ATPase subunit E2","[C]","Energy production and conversion ","ATP synthase (E/31 kDa) subunit","V-type proton ATPase subunit E1 OS=Arabidopsis thaliana OX=3702 GN=VHA-E1 PE=1 SV=2","C","Energy production and conversion","PREDICTED: V-type proton ATPase subunit E2 [Oryza sativa Japonica Group] "]
["c32796.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleolus (GO:0005730);; Biological Process: defense response (GO:0006952);; Biological Process: cell death (GO:0008219);; Biological Process: ethylene biosynthetic process (GO:0009693);; Biological Process: leaf senescence (GO:0010150);; Cellular Component: viral nucleocapsid (GO:0019013);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","K12741|3.59713e-15|gra:105778419|K12741 heterogeneous nuclear ribonucleoprotein A1/A3 | (RefSeq) UBP1-associated protein 2C","[R]","General function prediction only ","--","UBP1-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=UBA2C PE=2 SV=1","S","Function unknown","PREDICTED: UBP1-associated protein 2C-like isoform X2 [Gossypium hirsutum]"]
["c31415.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","hypothetical protein B456_003G033900 [Gossypium raimondii]"]
["c89378.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: 4-hydroxy-tetrahydrodipicolinate reductase (GO:0008839);; Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: photosynthesis, light reaction (GO:0019684);; Biological Process: diaminopimelate biosynthetic process (GO:0019877);; Biological Process: oxidation-reduction process (GO:0055114);; ","K16908|1.73926e-42|fve:101301250|K16908 chloroplast NAD(P)H dehydrogenase [EC:1.6.99.-] | (RefSeq) putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic","--","--","Dihydrodipicolinate reductase, N-terminus","Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPB3 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X1 [Fragaria vesca subsp. vesca]"]
["c30312.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105769147 [Gossypium raimondii] "]
["c1478.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111305753 [Durio zibethinus]"]
["c72999.graph_c0","[R]","General function prediction only ","Biological Process: invasive growth in response to glucose limitation (GO:0001403);; Molecular Function: G-protein alpha-subunit binding (GO:0001965);; Molecular Function: signal transducer activity (GO:0004871);; Molecular Function: protein kinase C binding (GO:0005080);; Molecular Function: GDP-dissociation inhibitor activity (GO:0005092);; Biological Process: G-protein coupled receptor signaling pathway (GO:0007186);; Biological Process: glucose mediated signaling pathway (GO:0010255);; Molecular Function: kinase activity (GO:0016301);; Biological Process: negative regulation of translation (GO:0017148);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Biological Process: positive regulation of conjugation with cellular fusion (GO:0031139);; Biological Process: positive regulation of protein autophosphorylation (GO:0031954);; Biological Process: regulation of fungal-type cell wall biogenesis (GO:0032995);; Biological Process: cellular protein localization (GO:0034613);; Biological Process: intracellular signal transduction (GO:0035556);; Molecular Function: ribosome binding (GO:0043022);; Biological Process: regulation of catalytic activity (GO:0050790);; Biological Process: regulation of eIF2 alpha phosphorylation by amino acid starvation (GO:0060733);; ","K14753|3.95578e-103|olu:OSTLU_48240|K14753 guanine nucleotide-binding protein subunit beta-2-like 1 protein | (RefSeq) RACK1B; Receptor of activated protein kinase C 1B, component of 40S small ribosomal subunit","[T]","Signal transduction mechanisms ","WD domain, G-beta repeat","Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii OX=3055 GN=GBLP PE=2 SV=1","S","Function unknown","Asc1p [Rhizophagus irregularis DAOM 197198w]"]
["c55738.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: large ribosomal subunit (GO:0015934);; ","K02872|1.45622e-14|gra:105803290|K02872 large subunit ribosomal protein L13Ae | (RefSeq) 60S ribosomal protein L13a-4-like","[J]","Translation, ribosomal structure and biogenesis ","--","60S ribosomal protein L13a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL13AD PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein GOBAR_AA26066 [Gossypium barbadense]"]
["c34628.graph_c0","[I]","Lipid transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Serine aminopeptidase, S33;; Alpha/beta hydrolase family;; alpha/beta hydrolase fold","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18590336 [Theobroma cacao]"]
["c27812.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|8.36038e-08|gra:105776584|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor MYB108-like","--","--","--","--","--","--","hypothetical protein GOBAR_AA19461 [Gossypium barbadense]"]
["c16337.graph_c1","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD35032 [Gossypium barbadense]"]
["c35652.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA replication (GO:0006260);; Biological Process: DNA repair (GO:0006281);; Biological Process: DNA recombination (GO:0006310);; ","K10739|9.56339e-81|gra:105771009|K10739 replication factor A2 | (RefSeq) replication protein A 32 kDa subunit B","[L]","Replication, recombination and repair ","--","Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA2B PE=2 SV=1","L","Replication, recombination and repair","replication protein A 32 kDa subunit B-like isoform X1 [Durio zibethinus]"]
["c52525.graph_c0","--","--","Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765);; ","K11778|2.87717e-17|gra:105803197|K11778 ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87] | (RefSeq) dehydrodolichyl diphosphate synthase 6-like","[I]","Lipid transport and metabolism ","--","Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana OX=3702 GN=At2g17570 PE=2 SV=2","I","Lipid transport and metabolism","dehydrodolichyl diphosphate synthase 6-like [Durio zibethinus]"]
["c26435.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111291122 [Durio zibethinus]"]
["c70663.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","K00665|7.30149e-27|csl:COCSUDRAFT_47508|K00665 fatty acid synthase, animal type [EC:2.3.1.85] | (RefSeq) hypothetical protein","[I]","Lipid transport and metabolism ","Beta-ketoacyl synthase, N-terminal domain;; Beta-ketoacyl synthase, C-terminal domain","--","Q","Secondary metabolites biosynthesis, transport and catabolism","beta-ketoacyl synthase [Meliniomyces variabilis F]"]
["c36282.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Mitochondrial ATPase expression;; Region in Clathrin and VPS;; Tetratricopeptide repeat;; Sensor_kinase_SpoOB-type, alpha-helical domain;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Mitochondrial 28S ribosomal protein S27","Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1","S","Function unknown","pentatricopeptide repeat-containing protein At1g09900 isoform X2 [Durio zibethinus]"]
["c35655.graph_c1","--","--","Biological Process: response to auxin (GO:0009733);; ","K14488|3.46143e-71|gra:105782551|K14488 SAUR family protein | (RefSeq) auxin-induced protein 6B","--","--","Auxin responsive protein","Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA24256 [Gossypium barbadense]"]
["c50744.graph_c0","[C]","Energy production and conversion ","Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","FAD binding domain;; Berberine and berberine like","Berberine bridge enzyme-like 4 OS=Arabidopsis thaliana OX=3702 GN=FOX2 PE=2 SV=1","C","Energy production and conversion","hypothetical protein GOBAR_DD32624 [Gossypium barbadense]"]
["c43824.graph_c0","--","--","--","--","--","--","CRT-like, chloroquine-resistance transporter-like","Protein CLT3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT3 PE=2 SV=1","S","Function unknown","protein CLT1, chloroplastic [Durio zibethinus]"]
["c83376.graph_c0","[V]","Defense mechanisms ","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: integral component of membrane (GO:0016021);; ","K03327|1.18996e-75|gra:105763866|K03327 multidrug resistance protein, MATE family | (RefSeq) protein TRANSPARENT TESTA 12","[R]","General function prediction only ","MatE","Protein DETOXIFICATION 34 OS=Arabidopsis thaliana OX=3702 GN=DTX34 PE=2 SV=1","V","Defense mechanisms","PREDICTED: protein DETOXIFICATION 34 [Gossypium arboreum]"]
["c44745.graph_c0","[G]","Carbohydrate transport and metabolism ","Cellular Component: plasma membrane (GO:0005886);; Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; ","--","[R]","General function prediction only ","Sugar (and other) transporter;; Major Facilitator Superfamily","Sugar transport protein 7 OS=Arabidopsis thaliana OX=3702 GN=STP7 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: sugar transport protein 7-like [Gossypium hirsutum]"]
["c45072.graph_c0","--","--","--","--","--","--","TMEM192 family","Protein FIP1 OS=Arabidopsis thaliana OX=3702 GN=FIP1 PE=1 SV=1","S","Function unknown","uncharacterized protein LOC111299187 [Durio zibethinus]"]
["c23680.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105798020 [Gossypium raimondii] "]
["c29834.graph_c0","[V]","Defense mechanisms ","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: integral component of membrane (GO:0016021);; ","K03327|0|gra:105796846|K03327 multidrug resistance protein, MATE family | (RefSeq) MATE efflux family protein 5","[R]","General function prediction only ","MatE","Protein DETOXIFICATION 55 OS=Arabidopsis thaliana OX=3702 GN=DTX55 PE=2 SV=1","V","Defense mechanisms","PREDICTED: protein DETOXIFICATION 55 [Gossypium arboreum]"]
["c31721.graph_c0","--","--","--","--","--","--","Plant self-incompatibility protein S1","--","--","--","PREDICTED: uncharacterized protein LOC108455670 [Gossypium arboreum]"]
["c43951.graph_c0","[R]","General function prediction only ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: cell division (GO:0051301);; ","K02206|9.74477e-104|gra:105773253|K02206 cyclin-dependent kinase 2 [EC:2.7.11.22] | (RefSeq) cell division control protein 2 homolog A","[R]","General function prediction only ","Protein kinase domain;; Protein tyrosine kinase","Cell division control protein 2 homolog A OS=Antirrhinum majus OX=4151 GN=CDC2A PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein B456_010G124800 [Gossypium raimondii]"]
["c42182.graph_c0","--","--","Molecular Function: double-stranded DNA binding (GO:0003690);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: isoprenoid biosynthetic process (GO:0008299);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: transferase activity (GO:0016740);; ","K15032|0|gra:105775821|K15032 mTERF domain-containing protein, mitochondrial | (RefSeq) uncharacterized LOC105775821","[KR]","--","mTERF","Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2","S","Function unknown","hypothetical protein B456_011G047900 [Gossypium raimondii]"]
["c29567.graph_c0","--","--","Molecular Function: cysteine-type endopeptidase activity (GO:0004197);; Biological Process: proteolysis (GO:0006508);; Biological Process: regulation of catalytic activity (GO:0050790);; ","K01363|9.68543e-28|gra:105802230|K01363 cathepsin B [EC:3.4.22.1] | (RefSeq) cathepsin B-like","[O]","Posttranslational modification, protein turnover, chaperones ","Papain family cysteine protease","Cathepsin B-like protease 1 OS=Arabidopsis thaliana OX=3702 GN=CATHB1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: cathepsin B-like isoform X1 [Gossypium raimondii] "]
["c27438.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Epidermal patterning factor proteins","EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1","S","Function unknown","PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Gossypium hirsutum]"]
["c40305.graph_c0","--","--","Biological Process: intracellular protein transport (GO:0006886);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: granum assembly (GO:0090391);; ","--","--","--","--","Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: protein LHCP TRANSLOCATION DEFECT-like [Gossypium arboreum] "]
["c56915.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: helicase activity (GO:0004386);; Molecular Function: endonuclease activity (GO:0004519);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","K10706|3.26611e-41|gra:105770193|K10706 senataxin [EC:3.6.4.-] | (RefSeq) uncharacterized ATP-dependent helicase C29A10.10c-like","[A]","RNA processing and modification ","AAA domain","--","L","Replication, recombination and repair","PREDICTED: uncharacterized ATP-dependent helicase C29A10.10c-like [Gossypium raimondii] "]
["c46978.graph_c2","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Salt stress response/antifungal","Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana OX=3702 GN=CRRSP3 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: cysteine-rich repeat secretory protein 3-like isoform X1 [Gossypium arboreum]"]
["c83100.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c54911.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111305238 [Durio zibethinus]"]
["c45830.graph_c0","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","K03118|5.75869e-80|tcc:TCM_009037|K03118 sec-independent protein translocase protein TatC | (RefSeq) Sec-independent periplasmic protein translocase","--","--","Sec-independent protein translocase protein (TatC);; Sec-independent protein translocase protein (TatC)","Sec-independent protein translocase protein TATC, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATC PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","sec-independent protein translocase protein TATC, chloroplastic-like isoform X2 [Durio zibethinus]"]
["c45955.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: primary amine oxidase activity (GO:0008131);; Biological Process: amine metabolic process (GO:0009308);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: quinone binding (GO:0048038);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00276|0|gra:105792112|K00276 primary-amine oxidase [EC:1.4.3.21] | (RefSeq) primary amine oxidase-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Copper amine oxidase, enzyme domain;; Copper amine oxidase, N3 domain;; Copper amine oxidase, N2 domain","Primary amine oxidase OS=Arabidopsis thaliana OX=3702 GN=At1g62810 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: primary amine oxidase-like [Gossypium hirsutum] "]
["c33991.graph_c1","--","--","--","--","--","--","Phosphate-induced protein 1 conserved region","Protein EXORDIUM-like 2 OS=Arabidopsis thaliana OX=3702 GN=EXL2 PE=2 SV=1","S","Function unknown","protein EXORDIUM-like 6 isoform X2 [Quercus suber]"]
["c28436.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02969|1.64859e-60|csl:COCSUDRAFT_22962|K02969 small subunit ribosomal protein S20e | (RefSeq) ribosomal protein S1","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S10p/S20e","40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c62707.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_007G368600 [Gossypium raimondii] "]
["c40925.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: hydrolase activity (GO:0016787);; ","K01054|0|gra:105778274|K01054 acylglycerol lipase [EC:3.1.1.23] | (RefSeq) caffeoylshikimate esterase-like","[I]","Lipid transport and metabolism ","Serine aminopeptidase, S33;; alpha/beta hydrolase fold;; Alpha/beta hydrolase family;; Prolyl oligopeptidase family;; Prefoldin subunit","Probable prefoldin subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At3g22480 PE=2 SV=1","I","Lipid transport and metabolism","PREDICTED: caffeoylshikimate esterase-like [Gossypium hirsutum] "]
["c18487.graph_c0","[EH]","Amino acid transport and metabolism ;; Coenzyme transport and metabolism ","Molecular Function: branched-chain-amino-acid transaminase activity (GO:0004084);; Biological Process: cellular amino acid metabolic process (GO:0006520);; ","K00826|6.66922e-11|cvr:CHLNCDRAFT_57448|K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] | (RefSeq) hypothetical protein","[E]","Amino acid transport and metabolism ","--","--","E","Amino acid transport and metabolism","branched chain amino acid aminotransferase [Ectocarpus siliculosus]"]
["c40786.graph_c0","[S]","Function unknown ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: membrane (GO:0016020);; ","--","[S]","Function unknown ","Uncharacterised ACR, YagE family COG1723","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107918270 [Gossypium hirsutum]"]
["c47917.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: isoprenoid biosynthetic process (GO:0008299);; Molecular Function: isomerase activity (GO:0016853);; Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Molecular Function: NADPH binding (GO:0070402);; ","K00099|5.08213e-152|gra:105800022|K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] | (RefSeq) 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like","--","--","1-deoxy-D-xylulose 5-phosphate reductoisomerase;; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal;; DXP reductoisomerase C-terminal domain;; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal","1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DXR PE=2 SV=2","I","Lipid transport and metabolism","1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Durio zibethinus]"]
["c24387.graph_c0","--","--","--","--","[R]","General function prediction only ","Protein of unknown function (DUF1685)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18600167 [Theobroma cacao] "]
["c40928.graph_c0","--","--","--","K10802|1.54393e-18|pper:PRUPE_ppa012424mg|K10802 high mobility group protein B1 | (RefSeq) hypothetical protein","[R]","General function prediction only ","--","High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1","B","Chromatin structure and dynamics","hypothetical protein B456_013G018500 [Gossypium raimondii] "]
["c5918.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111274324 [Durio zibethinus]"]
["c42243.graph_c0","[R]","General function prediction only ","--","K14004|0|gra:105802455|K14004 protein transport protein SEC13 | (RefSeq) protein transport protein SEC13 homolog B","[U]","Intracellular trafficking, secretion, and vesicular transport ","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain","Protein transport protein SEC13 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC13B PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: protein transport protein SEC13 homolog B-like isoform X1 [Gossypium hirsutum]"]
["c46486.graph_c0","--","--","--","--","[L]","Replication, recombination and repair ","DDE superfamily endonuclease;; Plant transposon protein","Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1","S","Function unknown","PREDICTED: putative nuclease HARBI1 [Gossypium raimondii] "]
["c87906.graph_c0","[DPM]","Cell cycle control, cell division, chromosome partitioning ;; Inorganic ion transport and metabolism ;; Cell wall/membrane/envelope biogenesis ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05909|3.91259e-52|tcc:TCM_046799|K05909 laccase [EC:1.10.3.2] | (RefSeq) Laccase 17","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase","Laccase-2 OS=Arabidopsis thaliana OX=3702 GN=LAC2 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","laccase-17 isoform X2 [Citrus clementina]"]
["c59909.graph_c0","--","--","Molecular Function: isocitrate lyase activity (GO:0004451);; Biological Process: glyoxylate cycle (GO:0006097);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Cellular Component: glyoxysome (GO:0009514);; Molecular Function: metal ion binding (GO:0046872);; ","K01637|2.40083e-33|gra:105794296|K01637 isocitrate lyase [EC:4.1.3.1] | (RefSeq) isocitrate lyase-like","[C]","Energy production and conversion ","Isocitrate lyase family","Isocitrate lyase OS=Gossypium hirsutum OX=3635 PE=2 SV=1","C","Energy production and conversion","PREDICTED: isocitrate lyase-like [Gossypium arboreum]"]
["c87797.graph_c0","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","K15400|1.9463e-61|gra:105771736|K15400 omega-hydroxypalmitate O-feruloyl transferase [EC:2.3.1.188] | (RefSeq) omega-hydroxypalmitate O-feruloyl transferase","--","--","Transferase family","Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana OX=3702 GN=HHT1 PE=1 SV=1","S","Function unknown","PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Gossypium hirsutum]"]
["c41477.graph_c0","--","--","--","K09422|5.9466e-127|gra:105799749|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor RAX2-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor RAX2-like [Gossypium arboreum]"]
["c92367.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c2108.graph_c0","--","--","--","--","[K]","Transcription ","Pou domain - N-terminal to homeobox domain","--","K","Transcription","--"]
["c46758.graph_c2","--","--","Biological Process: flavonoid biosynthetic process (GO:0009813);; Molecular Function: chalcone isomerase activity (GO:0045430);; ","K01859|2.13507e-50|gra:105783554|K01859 chalcone isomerase [EC:5.5.1.6] | (RefSeq) chalcone--flavonone isomerase","--","--","Chalcone-flavanone isomerase","Chalcone--flavonone isomerase OS=Gossypium hirsutum OX=3635 GN=CHI PE=2 SV=1","G","Carbohydrate transport and metabolism","chalcone isomerase, partial [Hibiscus cannabinus]"]
["c91368.graph_c0","--","--","--","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c33953.graph_c2","--","--","Biological Process: nucleic acid metabolic process (GO:0090304);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","T","Signal transduction mechanisms","uncharacterized protein LOC112094217 [Morus notabilis]"]
["c92745.graph_c0","--","--","--","--","[OT]","--","--","--","T","Signal transduction mechanisms","--"]
["c86400.graph_c0","[C]","Energy production and conversion ","Molecular Function: catalytic activity (GO:0003824);; ","--","[C]","Energy production and conversion ","--","--","C","Energy production and conversion","alpha subunit of succinyl-CoA ligase [Basidiobolus meristosporus CBS 931.73]"]
["c8818.graph_c0","--","--","Biological Process: cell plate assembly (GO:0000919);; Cellular Component: early endosome (GO:0005769);; Cellular Component: trans-Golgi network (GO:0005802);; ","K20306|3.33655e-38|gra:105773303|K20306 trafficking protein particle complex subunit 9 | (RefSeq) trafficking protein particle complex II-specific subunit 120 homolog","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Trafficking protein particle complex II-specific subunit 120 homolog OS=Arabidopsis thaliana OX=3702 GN=TRS120 PE=1 SV=1","S","Function unknown","hypothetical protein B456_010G117200 [Gossypium raimondii]"]
["c88617.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: recognition of pollen (GO:0048544);; ","--","--","--","Protein kinase domain","G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK2 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 [Durio zibethinus]"]
["c50961.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ domain","Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATJ20 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","chaperone protein dnaJ 20, chloroplastic-like [Durio zibethinus]"]
["c87520.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02918|1.4403e-23|gsl:Gasu_07620|K02918 large subunit ribosomal protein L35e | (RefSeq) 60S ribosomal protein L35","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L29 protein","60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","60S ribosomal protein L35 [Tuber melanosporum Mel28] "]
["c1695.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02973|7.05992e-45|pda:103715008|K02973 small subunit ribosomal protein S23e | (RefSeq) 40S ribosomal protein S23-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S12/S23","40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c48439.graph_c0","[C]","Energy production and conversion ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: metabolic process (GO:0008152);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: ligase activity (GO:0016874);; ","K01900|0|tcc:TCM_003964|K01900 succinyl-CoA synthetase beta subunit [EC:6.2.1.4 6.2.1.5] | (RefSeq) ATP citrate lyase (ACL) family protein","[C]","Energy production and conversion ","ATP-grasp domain;; CoA-ligase","Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum OX=4081 PE=1 SV=1","C","Energy production and conversion","hypothetical protein GOBAR_DD18030 [Gossypium barbadense]"]
["c27288.graph_c0","--","--","--","--","--","--","--","Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g30100 PE=2 SV=2","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Eucalyptus grandis] "]
["c39006.graph_c0","[C]","Energy production and conversion ","Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030);; Biological Process: cellular aldehyde metabolic process (GO:0006081);; Biological Process: oxidation-reduction process (GO:0055114);; ","K12355|8.60906e-12|pvu:PHAVU_004G162300g|K12355 coniferyl-aldehyde dehydrogenase [EC:1.2.1.68] | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH2B4 PE=1 SV=1","C","Energy production and conversion","hypothetical protein A4X09_g7462 [Tilletia walkeri]"]
["c36330.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","--","Calcium/calmodulin-regulated receptor-like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRLK1 PE=1 SV=1","T","Signal transduction mechanisms","calcium/calmodulin-regulated receptor-like kinase 1 [Quercus suber] "]
["c25955.graph_c0","--","--","--","--","--","--","Keratin type II head;; Intermediate filament protein","--","S","Function unknown","--"]
["c43854.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1","B","Chromatin structure and dynamics","PREDICTED: histone deacetylase HDT1-like isoform X2 [Gossypium raimondii]"]
["c94480.graph_c0","--","--","Cellular Component: late endosome (GO:0005770);; Cellular Component: cytosol (GO:0005829);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: retrograde transport, endosome to Golgi (GO:0042147);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","E","Amino acid transport and metabolism","cytoplasmic protein [Kwoniella pini CBS 10737] "]
["c91430.graph_c0","--","--","--","--","[S]","Function unknown ","Domain of unknown function (DUF4205)","--","S","Function unknown","PREDICTED: ubiquitin carboxyl-terminal hydrolase FAM188A-like [Juglans regia]"]
["c43130.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","[R]","General function prediction only ","PPR repeat family;; Pentatricopeptide repeat domain;; PPR repeat;; Pentacotripeptide-repeat region of PRORP;; PPR repeat;; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g35850 PE=1 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial-like isoform X2 [Gossypium hirsutum]"]
["c46241.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein self-association (GO:0043621);; Biological Process: viral replication complex formation and maintenance (GO:0046786);; ","--","--","--","Tetraspanin family","Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A PE=1 SV=1","S","Function unknown","PREDICTED: tobamovirus multiplication protein 2A-like [Gossypium raimondii] "]
["c25271.graph_c0","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: extracellular region (GO:0005576);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; ","K04733|0|tcc:TCM_042446|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) Concanavalin A-like lectin protein kinase family protein","--","--","Protein kinase domain;; Protein tyrosine kinase;; Cysteine-rich secretory protein family","L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1","T","Signal transduction mechanisms","L-type lectin-domain containing receptor kinase IX.1-like [Durio zibethinus]"]
["c30938.graph_c0","--","--","--","K13379|2.00597e-09|smo:SELMODRAFT_76446|K13379 reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] | (RefSeq) RGP1-1; UDP-L-arabinose mutase-like protein","--","--","--","Probable UDP-arabinopyranose mutase 2 OS=Solanum tuberosum OX=4113 GN=UPTG2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein OsI_08861 [Oryza sativa Indica Group]"]
["c38912.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","No apical meristem (NAM) protein","NAC domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=NAC045 PE=2 SV=1","S","Function unknown","PREDICTED: NAC domain-containing protein 86 isoform X1 [Gossypium raimondii] "]
["c23357.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|4.42816e-29|tcc:TCM_041674|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) Peptide transporter 1","[E]","Amino acid transport and metabolism ","POT family","Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1","E","Amino acid transport and metabolism","hypothetical protein GOBAR_DD15612 [Gossypium barbadense]"]
["c38678.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Zinc-finger of C2H2 type;; Zinc-finger double-stranded RNA-binding","--","S","Function unknown","hypothetical protein GOBAR_DD14876 [Gossypium barbadense]"]
["c35949.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Molecular Function: isomerase activity (GO:0016853);; ","--","--","--","--","--","L","Replication, recombination and repair","hypothetical protein CUMW_232680 [Citrus unshiu]"]
["c33291.graph_c0","[T]","Signal transduction mechanisms ","Cellular Component: membrane (GO:0016020);; ","--","--","--","CP12 domain","Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-2 PE=1 SV=1","S","Function unknown","hypothetical protein COLO4_23231 [Corchorus olitorius]"]
["c32989.graph_c1","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: MAP kinase activity (GO:0004707);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: intracellular (GO:0005622);; Biological Process: protein autophosphorylation (GO:0046777);; ","K20538|1.74309e-76|gra:105794426|K20538 mitogen-activated protein kinase 8 [EC:2.7.11.24] | (RefSeq) mitogen-activated protein kinase 17-like","[T]","Signal transduction mechanisms ","--","Mitogen-activated protein kinase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK12 PE=1 SV=2","T","Signal transduction mechanisms","mitogen-activated protein kinase 17-like [Gossypium hirsutum] "]
["c83140.graph_c0","[GEPR]","Carbohydrate transport and metabolism ;; Amino acid transport and metabolism ;; Inorganic ion transport and metabolism ;; General function prediction only ","Molecular Function: inorganic phosphate transmembrane transporter activity (GO:0005315);; Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuole (GO:0005773);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: phosphate ion transport (GO:0006817);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to abscisic acid (GO:0009737);; Molecular Function: phosphate ion transmembrane transporter activity (GO:0015114);; Biological Process: transmembrane transport (GO:0055085);; ","K08176|2.21353e-45|bna:106406371|K08176 MFS transporter, PHS family, inorganic phosphate transporter | (RefSeq) inorganic phosphate transporter 1-4-like","[P]","Inorganic ion transport and metabolism ","--","Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana OX=3702 GN=PHT1-4 PE=1 SV=1","G","Carbohydrate transport and metabolism","unknown [Lotus japonicus]"]
["c42352.graph_c1","[S]","Function unknown ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; ","K20092|0|gra:105791683|K20092 chromodomain-helicase-DNA-binding protein 1-like [EC:3.6.4.12] | (RefSeq) chromodomain-helicase-DNA-binding protein 1-like","[K]","Transcription ","SNF2 family N-terminal domain;; Helicase conserved C-terminal domain;; Class II histone deacetylase complex subunits 2 and 3;; SNF2 family N-terminal domain","Probable helicase CHR10 OS=Arabidopsis thaliana OX=3702 GN=CHR10 PE=3 SV=1","L","Replication, recombination and repair","PREDICTED: probable helicase CHR10 isoform X1 [Gossypium arboreum] "]
["c46543.graph_c1","[I]","Lipid transport and metabolism ","--","--","[R]","General function prediction only ","Alpha/beta hydrolase family;; alpha/beta hydrolase fold;; Serine aminopeptidase, S33","Pheophytinase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPH PE=1 SV=1","S","Function unknown","PREDICTED: pheophytinase, chloroplastic-like [Gossypium arboreum] "]
["c42281.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC18613980 [Theobroma cacao]"]
["c44444.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: cellulose microfibril organization (GO:0010215);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cell growth (GO:0016049);; Molecular Function: polysaccharide binding (GO:0030247);; Cellular Component: anchored component of membrane (GO:0031225);; ","--","--","--","COBRA-like protein;; Cellulose binding domain","COBRA-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=COBL10 PE=2 SV=1","S","Function unknown","PREDICTED: COBRA-like protein 10 [Gossypium arboreum]"]
["c50401.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_011G193000 [Gossypium raimondii]"]
["c67780.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD20951 [Gossypium barbadense]"]
["c15142.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","PH domain","--","S","Function unknown","--"]
["c16703.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","No apical meristem (NAM) protein","NAC domain-containing protein 43 OS=Arabidopsis thaliana OX=3702 GN=NAC043 PE=2 SV=2","K","Transcription","NAC domain-containing 43 -like protein [Gossypium arboreum]"]
["c7279.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Molecular Function: peptidase activity (GO:0008233);; ","K05609|1.37152e-13|gra:105765075|K05609 ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-terminal hydrolase isozyme L3","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin carboxyl-terminal hydrolase, family 1","Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana OX=3702 GN=UCH3 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein H310_00181 [Aphanomyces invadans] "]
["c44044.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105769259 [Gossypium raimondii] "]
["c16547.graph_c0","[JO]","Translation, ribosomal structure and biogenesis ;; Posttranslational modification, protein turnover, chaperones ","Biological Process: N-terminal protein amino acid acetylation (GO:0006474);; Molecular Function: N-acetyltransferase activity (GO:0008080);; Cellular Component: membrane (GO:0016020);; ","--","--","--","Acetyltransferase (GNAT) domain","--","J","Translation, ribosomal structure and biogenesis","uncharacterized protein LOC110422111 [Herrania umbratica]"]
["c40733.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","PREDICTED: late embryogenesis abundant protein At1g64065-like [Gossypium hirsutum] "]
["c25965.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c41840.graph_c0","--","--","--","K06670|4.40582e-117|gra:105785358|K06670 cohesin complex subunit SCC1 | (RefSeq) sister chromatid cohesion 1 protein 4-like","--","--","--","--","S","Function unknown","PREDICTED: sister chromatid cohesion 1 protein 4-like isoform X3 [Gossypium hirsutum]"]
["c372.graph_c1","--","--","--","--","[R]","General function prediction only ","Leucine rich repeat N-terminal domain","LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana OX=3702 GN=EFR PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD22272 [Gossypium barbadense]"]
["c61088.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18614628 [Theobroma cacao]"]
["c49824.graph_c1","--","--","--","--","--","--","--","--","--","--","protein LURP-one-related 14-like [Durio zibethinus]"]
["c90543.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: transcription, RNA-templated (GO:0001172);; Molecular Function: RNA-directed 5'-3' RNA polymerase activity (GO:0003968);; ","K11699|3.06609e-36|mtr:MTR_1g032610|K11699 RNA-dependent RNA polymerase [EC:2.7.7.48] | (RefSeq) RNA-directed RNA polymerase","[A]","RNA processing and modification ","--","RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1","K","Transcription","RNA-directed RNA polymerase [Medicago truncatula] "]
["c65557.graph_c0","--","--","--","--","--","--","--","Protein PHYTOCHROME KINASE SUBSTRATE 3 OS=Arabidopsis thaliana OX=3702 GN=PKS3 PE=2 SV=2","S","Function unknown","PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 1-like [Gossypium hirsutum]"]
["c13690.graph_c0","--","--","--","K03872|1.19622e-10|tcc:TCM_041746|K03872 transcription elongation factor B, polypeptide 1 | (RefSeq) BTB/POZ domain-containing protein","[K]","Transcription ","--","--","K","Transcription","PREDICTED: transcription elongation factor B polypeptide 1-like isoform X2 [Gossypium raimondii] "]
["c83391.graph_c0","--","--","--","--","--","--","JAB1/Mov34/MPN/PAD-1 ubiquitin protease","--","S","Function unknown","--"]
["c92789.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Ligand-binding domain of nuclear hormone receptor","--","K","Transcription","--"]
["c31592.graph_c0","--","--","--","--","[S]","Function unknown ","--","Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1","S","Function unknown","protein SPIRRIG-like isoform X1 [Durio zibethinus] "]
["c73029.graph_c0","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein folding (GO:0006457);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: apoplast (GO:0048046);; Biological Process: positive regulation of superoxide dismutase activity (GO:1901671);; ","K04078|3.05932e-43|pper:PRUPE_ppa010359mg|K04078 chaperonin GroES | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","--","20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","20 kDa chaperonin, chloroplastic [Prunus persica] "]
["c42406.graph_c0","[C]","Energy production and conversion ","Molecular Function: plastoquinol--plastocyanin reductase activity (GO:0009496);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: thylakoid membrane (GO:0042651);; Molecular Function: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity (GO:0045158);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Biological Process: oxidation-reduction process (GO:0055114);; ","K02636|1.55577e-123|gra:105794918|K02636 cytochrome b6-f complex iron-sulfur subunit [EC:1.10.9.1] | (RefSeq) cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like","[C]","Energy production and conversion ","Cytochrome B6-F complex Fe-S subunit;; Rieske [2Fe-2S] domain","Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum OX=3888 GN=petC PE=2 SV=1","C","Energy production and conversion","cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Durio zibethinus]"]
["c49925.graph_c0","[L]","Replication, recombination and repair ","Biological Process: base-excision repair (GO:0006284);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; ","--","--","--","RRM in Demeter;; Permuted single zf-CXXC unit","Transcriptional activator DEMETER OS=Arabidopsis thaliana OX=3702 GN=DME PE=1 SV=2","L","Replication, recombination and repair","PREDICTED: transcriptional activator DEMETER-like isoform X2 [Gossypium raimondii] "]
["c91494.graph_c0","[G]","Carbohydrate transport and metabolism ","--","--","[G]","Carbohydrate transport and metabolism ","Transketolase, thiamine diphosphate binding domain","--","G","Carbohydrate transport and metabolism","--"]
["c76476.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: binding (GO:0005488);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","[QI]","--","Cytochrome P450","Secologanin synthase OS=Catharanthus roseus OX=4058 GN=CYP72A1 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","predicted protein, partial [Thalassiosira pseudonana CCMP1335] "]
["c21942.graph_c0","--","--","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","--","--","S","Function unknown","2-oxoglutarate-dependent dioxygenase [Corchorus capsularis]"]
["c46309.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC110413143 isoform X2 [Herrania umbratica]"]
["c54197.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","hypothetical protein GOBAR_AA31276 [Gossypium barbadense]"]
["c37579.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; ","K15264|1.73918e-98|gra:105767979|K15264 putative methyltransferase [EC:2.1.1.-] | (RefSeq) probable 28S rRNA (cytosine-C(5))-methyltransferase","[D]","Cell cycle control, cell division, chromosome partitioning ","16S rRNA methyltransferase RsmB/F","--","J","Translation, ribosomal structure and biogenesis","PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X2 [Gossypium raimondii]"]
["c35634.graph_c0","[C]","Energy production and conversion ","Molecular Function: cytochrome-c oxidase activity (GO:0004129);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: oxidative phosphorylation (GO:0006119);; Biological Process: aerobic respiration (GO:0009060);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: heme binding (GO:0020037);; Cellular Component: respiratory chain (GO:0070469);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","K02256|4.38966e-49|apro:ChprMp021|K02256 cytochrome c oxidase subunit 1 [EC:1.9.3.1] | (RefSeq) cox1; cytochrome oxidase subunit I","[C]","Energy production and conversion ","Cytochrome C and Quinol oxidase polypeptide I","Cytochrome c oxidase subunit 1 OS=Marchantia polymorpha OX=3197 GN=COX1 PE=3 SV=2","C","Energy production and conversion","cytochrome c oxidase subunit I, partial (mitochondrion) [Lingulodinium polyedrum]"]
["c22274.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|7.1814e-86|gra:105793384|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) protein NRT1/ PTR FAMILY 2.7-like","[E]","Amino acid transport and metabolism ","POT family","Protein NRT1/ PTR FAMILY 2.7 OS=Arabidopsis thaliana OX=3702 GN=NPF2.7 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: protein NRT1/ PTR FAMILY 2.7-like [Gossypium arboreum]"]
["c62251.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii] "]
["c16475.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity (GO:0016740);; ","K08238|2.293e-140|tcc:TCM_004623|K08238 xyloglucan 6-xylosyltransferase [EC:2.4.2.39] | (RefSeq) Alpha-1,6-xylosyltransferase isoform 1","[GM]","--","galactosyl transferase GMA12/MNN10 family","Xyloglucan 6-xylosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=XXT1 PE=1 SV=1","S","Function unknown","Alpha-1,6-xylosyltransferase isoform 1 [Theobroma cacao]"]
["c33399.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Gossypium arboreum]"]
["c45188.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: protein dephosphorylation (GO:0006470);; ","K04460|6.66008e-179|gra:105800768|K04460 serine/threonine-protein phosphatase 5 [EC:3.1.3.16] | (RefSeq) serine/threonine-protein phosphatase 7","[R]","General function prediction only ","Calcineurin-like phosphoesterase","Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana OX=3702 GN=PP7 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein phosphatase 7 [Gossypium raimondii] "]
["c92489.graph_c0","--","--","Molecular Function: catalytic activity (GO:0003824);; Molecular Function: coenzyme binding (GO:0050662);; ","K12451|6.97639e-28|sly:101249670|K12451 3,5-epimerase/4-reductase [EC:5.1.3.- 1.1.1.-] | (RefSeq) bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase","[G]","Carbohydrate transport and metabolism ","--","Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana OX=3702 GN=NRS/ER PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like [Cajanus cajan] "]
["c86625.graph_c0","--","--","Biological Process: cellular macromolecule biosynthetic process (GO:0034645);; Biological Process: macromolecular complex subunit organization (GO:0043933);; Cellular Component: intracellular organelle part (GO:0044446);; Biological Process: nucleic acid metabolic process (GO:0090304);; ","K09272|1.65245e-13|ath:AT3G28730|K09272 structure-specific recognition protein 1 | (RefSeq) HMG; high mobility group","[KLB]","--","Structure-specific recognition protein (SSRP1)","FACT complex subunit SSRP1 OS=Arabidopsis thaliana OX=3702 GN=SSRP1 PE=1 SV=2","B","Chromatin structure and dynamics","FACT complex subunit POB3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=POB3 PE=3 SV=1 [Rhizoctonia solani AG-1 IB]"]
["c36062.graph_c1","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-H2 zinc finger domain;; RING-like zinc finger;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; RING-type zinc-finger;; Anaphase-promoting complex subunit 11 RING-H2 finger","RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","RING-H2 finger protein ATL2-like [Durio zibethinus]"]
["c27018.graph_c0","--","--","--","K19951|2.53434e-48|gra:105783739|K19951 TBC1 domain family member 8/9 | (RefSeq) EVI5-like protein","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","S","Function unknown","PREDICTED: rab GTPase-activating protein 1-like isoform X4 [Gossypium arboreum]"]
["c44792.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Molecular Function: snRNA binding (GO:0017069);; ","--","--","--","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1","S","Function unknown","PREDICTED: RNA-binding protein 2-like isoform X2 [Gossypium hirsutum]"]
["c30421.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA40335 [Gossypium barbadense]"]
["c45128.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K14962|1.95696e-65|gra:105777558|K14962 COMPASS component SWD2 | (RefSeq) WD repeat-containing protein 82","[ABO]","--","WD domain, G-beta repeat","Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1","S","Function unknown","protein ANTHESIS POMOTING FACTOR 1 isoform X2 [Durio zibethinus]"]
["c27873.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1","S","Function unknown","transcription factor bHLH168 [Herrania umbratica]"]
["c2450.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; ","--","--","--","--","--","S","Function unknown","retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]"]
["c30739.graph_c0","--","--","--","--","--","--","--","Calmodulin-binding protein 25 OS=Arabidopsis thaliana OX=3702 GN=CAMBP25 PE=1 SV=1","S","Function unknown","calmodulin-binding protein 25-like [Herrania umbratica]"]
["c37056.graph_c0","--","--","Cellular Component: protein phosphatase type 2A complex (GO:0000159);; Biological Process: regulation of phosphoprotein phosphatase activity (GO:0034047);; ","K04354|1.93507e-09|gra:105777489|K04354 serine/threonine-protein phosphatase 2A regulatory subunit B | (RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform","[T]","Signal transduction mechanisms ","--","Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB1 PE=1 SV=2","T","Signal transduction mechanisms","serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Cucurbita pepo subsp. pepo]"]
["c41949.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ligase activity (GO:0016874);; Biological Process: regulation of lipid catabolic process (GO:0050994);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana OX=3702 GN=PRT6 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD15713 [Gossypium barbadense]"]
["c85697.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105770365 [Gossypium raimondii] "]
["c30913.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1442)","--","S","Function unknown","hypothetical protein COLO4_12536 [Corchorus olitorius]"]
["c93492.graph_c0","[C]","Energy production and conversion ","Molecular Function: malic enzyme activity (GO:0004470);; Molecular Function: binding (GO:0005488);; Biological Process: single-organism metabolic process (GO:0044710);; ","K00029|1.78913e-16|cme:CYME_CMJ051C|K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] | (RefSeq) NADP-dependent malic enzyme","[C]","Energy production and conversion ","Malic enzyme, NAD binding domain","NADP-dependent malic enzyme 1 OS=Arabidopsis thaliana OX=3702 GN=NADP-ME1 PE=1 SV=1","C","Energy production and conversion","malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [Saprolegnia diclina VS20] "]
["c39633.graph_c0","--","--","--","--","--","--","--","Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1","S","Function unknown","PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Gossypium hirsutum]"]
["c6747.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC9268392 [Oryza sativa Japonica Group] "]
["c59965.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD20009 [Gossypium barbadense]"]
["c52234.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=1","S","Function unknown","pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Herrania umbratica]"]
["c40424.graph_c1","--","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: protein folding (GO:0006457);; ","K04078|5.32467e-37|gra:105791725|K04078 chaperonin GroES | (RefSeq) 20 kDa chaperonin, chloroplastic","[O]","Posttranslational modification, protein turnover, chaperones ","Chaperonin 10 Kd subunit","10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","GroES-like protein [Corchorus olitorius]"]
["c47194.graph_c0","--","--","Molecular Function: nutrient reservoir activity (GO:0045735);; ","--","--","--","Cys-rich Gliadin N-terminal;; Protease inhibitor/seed storage/LTP family","Glutenin, low molecular weight subunit 1D1 OS=Triticum aestivum OX=4565 PE=2 SV=1","--","--","lmw-gs, partial [Triticum aestivum]"]
["c33868.graph_c0","--","--","--","K09422|1.20859e-47|tcc:TCM_007904|K09422 myb proto-oncogene protein, plant | (RefSeq) MYB-like 102, putative","[K]","Transcription ","--","Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1","K","Transcription","transcription factor MYB41-like [Herrania umbratica]"]
["c83806.graph_c0","--","--","--","--","--","--","--","--","--","--","probable clathrin assembly protein At4g32285 [Aegilops tauschii subsp. tauschii]"]
["c17031.graph_c1","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","[T]","Signal transduction mechanisms ","Phosphatidylinositol 3- and 4-kinase","Phosphatidylinositol 4-kinase gamma 5 OS=Arabidopsis thaliana OX=3702 GN=PI4KG5 PE=1 SV=1","S","Function unknown","PREDICTED: phosphatidylinositol 4-kinase gamma 5-like [Gossypium hirsutum]"]
["c86429.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02960|1.76973e-30|pop:POPTR_0001s31210g|K02960 small subunit ribosomal protein S16e | (RefSeq) POPTRDRAFT_815673; ribosomal protein S16","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S9/S16","40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S16 [Aspergillus niger CBS 513.88] "]
["c26144.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_020407 [Theobroma cacao]"]
["c18410.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: inositol-3-phosphate synthase activity (GO:0004512);; Biological Process: inositol biosynthetic process (GO:0006021);; Biological Process: phospholipid biosynthetic process (GO:0008654);; ","K01858|3.93701e-64|gra:105787844|K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] | (RefSeq) inositol-3-phosphate synthase","[I]","Lipid transport and metabolism ","Myo-inositol-1-phosphate synthase","Inositol-3-phosphate synthase OS=Nicotiana paniculata OX=62141 GN=INPS1 PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein B456_007G241600 [Gossypium raimondii]"]
["c76635.graph_c0","--","--","--","--","--","--","NAC domain","--","K","Transcription","--"]
["c61706.graph_c0","--","--","--","--","--","--","Retroviral aspartyl protease","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107922401 [Gossypium hirsutum]"]
["c34582.graph_c0","[GI]","Carbohydrate transport and metabolism ;; Lipid transport and metabolism ","Cellular Component: cell wall (GO:0005618);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin catabolic process (GO:0045490);; Molecular Function: pectinesterase inhibitor activity (GO:0046910);; ","--","--","--","Pectinesterase","Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana OX=3702 GN=PME64 PE=2 SV=2","G","Carbohydrate transport and metabolism","Pectinesterase [Handroanthus impetiginosus]"]
["c88404.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Biological Process: single-organism metabolic process (GO:0044710);; Molecular Function: metal ion binding (GO:0046872);; ","--","[QI]","--","Cytochrome P450","Geraniol 8-hydroxylase OS=Catharanthus roseus OX=4058 GN=CYP76B6 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein CUMW_123770 [Citrus unshiu]"]
["c85007.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA09354 [Gossypium barbadense]"]
["c36777.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: protein transport (GO:0015031);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; ","K17780|1.98454e-32|gra:105764820|K17780 mitochondrial import inner membrane translocase subunit TIM8 | (RefSeq) mitochondrial import inner membrane translocase subunit TIM8","[U]","Intracellular trafficking, secretion, and vesicular transport ","Tim10/DDP family zinc finger","Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana OX=3702 GN=TIM8 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_008G209300, partial [Gossypium raimondii]"]
["c43178.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein folding (GO:0006457);; Molecular Function: unfolded protein binding (GO:0051082);; ","K09510|1.25273e-81|gra:105788387|K09510 DnaJ homolog subfamily B member 4 | (RefSeq) dnaJ homolog subfamily B member 4","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ C terminal domain","DnaJ protein homolog ANJ1 OS=Atriplex nummularia OX=3553 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD07898 [Gossypium barbadense]"]
["c43003.graph_c0","[H]","Coenzyme transport and metabolism ","Biological Process: cellular protein modification process (GO:0006464);; Molecular Function: ligase activity (GO:0016874);; ","--","[H]","Coenzyme transport and metabolism ","--","--","H","Coenzyme transport and metabolism","PREDICTED: putative lipoate-protein ligase A isoform X1 [Gossypium raimondii]"]
["c41654.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105794221 isoform X2 [Gossypium raimondii] "]
["c34257.graph_c0","--","--","Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742);; Biological Process: protein import into mitochondrial matrix (GO:0030150);; ","K17771|2.0406e-09|gra:105783087|K17771 mitochondrial import receptor subunit TOM7 | (RefSeq) mitochondrial import receptor subunit TOM7-1","--","--","TOM7 family","--","U","Intracellular trafficking, secretion, and vesicular transport","mitochondrial import receptor subunit TOM7-1-like [Durio zibethinus]"]
["c30471.graph_c1","--","--","Biological Process: response to auxin (GO:0009733);; ","K14488|5.5239e-35|tcc:TCM_006733|K14488 SAUR family protein | (RefSeq) SAUR-like auxin-responsive protein family","--","--","Auxin responsive protein","Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1","S","Function unknown","auxin-induced protein 15A-like [Durio zibethinus]"]
["c43992.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111282136 isoform X2 [Durio zibethinus]"]
["c52821.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein At1g76070-like [Durio zibethinus]"]
["c47007.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis]"]
["c32377.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial isoform X2 [Gossypium raimondii] "]
["c50187.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: signal transduction (GO:0007165);; Biological Process: response to nutrient (GO:0007584);; Biological Process: response to water deprivation (GO:0009414);; Cellular Component: plastid (GO:0009536);; Biological Process: potassium ion import (GO:0010107);; Biological Process: stomatal movement (GO:0010118);; ","--","[T]","Signal transduction mechanisms ","--","CBL-interacting serine/threonine-protein kinase 23 OS=Arabidopsis thaliana OX=3702 GN=CIPK23 PE=1 SV=1","T","Signal transduction mechanisms","CBL-interacting serine/threonine-protein kinase 23 isoform X1 [Durio zibethinus]"]
["c43790.graph_c1","--","--","--","--","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain;; Dof domain, zinc finger","Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD26153 [Gossypium barbadense]"]
["c61920.graph_c0","--","--","--","--","--","--","--","--","--","--","zinc finger CCCH domain-containing protein 12 isoform X2 [Durio zibethinus]"]
["c52885.graph_c0","--","--","--","--","--","--","Plastocyanin-like domain","Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1","S","Function unknown","PREDICTED: basic blue protein [Theobroma cacao]"]
["c80551.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: L-alanine:2-oxoglutarate aminotransferase activity (GO:0004021);; Biological Process: biosynthetic process (GO:0009058);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K14272|3.79514e-43|fve:101304831|K14272 glutamate--glyoxylate aminotransferase [EC:2.6.1.4 2.6.1.2 2.6.1.44] | (RefSeq) glutamate--glyoxylate aminotransferase 2","[E]","Amino acid transport and metabolism ","Aminotransferase class I and II","Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana OX=3702 GN=GGAT2 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: glutamate--glyoxylate aminotransferase 2 [Fragaria vesca subsp. vesca] "]
["c49364.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K17046|1.29681e-90|gra:105768561|K17046 protein DEK | (RefSeq) protein DEK","[B]","Chromatin structure and dynamics ","--","--","S","Function unknown","DNA ligase 1-like isoform X3 [Durio zibethinus]"]
["c46598.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: 6-phosphofructokinase activity (GO:0003872);; Molecular Function: ATP binding (GO:0005524);; Biological Process: fructose 6-phosphate metabolic process (GO:0006002);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: glycolytic process through fructose-6-phosphate (GO:0061615);; ","K00850|2.63673e-167|gra:105787828|K00850 6-phosphofructokinase 1 [EC:2.7.1.11] | (RefSeq) ATP-dependent 6-phosphofructokinase 5, chloroplastic","[G]","Carbohydrate transport and metabolism ","Phosphofructokinase;; Phosphofructokinase","ATP-dependent 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PFK5 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein B456_003G042800 [Gossypium raimondii]"]
["c81877.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein COLO4_23147 [Corchorus olitorius]"]
["c88629.graph_c0","--","--","Cellular Component: nuclear pore (GO:0005643);; Cellular Component: nucleoplasm (GO:0005654);; Cellular Component: cytosol (GO:0005829);; Biological Process: NLS-bearing protein import into nucleus (GO:0006607);; Molecular Function: nuclear localization sequence binding (GO:0008139);; Molecular Function: protein transporter activity (GO:0008565);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Armadillo/beta-catenin-like repeat","Importin subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=IMPA1 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c85305.graph_c0","--","--","--","--","[E]","Amino acid transport and metabolism ","Transmembrane amino acid transporter protein","--","E","Amino acid transport and metabolism","hypothetical protein SDRG_10169 [Saprolegnia diclina VS20] "]
["c15824.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","plasma membrane proteolipid 3 [Gossypium arboreum]"]
["c51686.graph_c0","--","--","--","K09571|2.31249e-16|gra:105803323|K09571 FK506-binding protein 4/5 [EC:5.2.1.8] | (RefSeq) peptidyl-prolyl cis-trans isomerase FKBP62","[O]","Posttranslational modification, protein turnover, chaperones ","--","Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana OX=3702 GN=FKBP62 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62 [Gossypium arboreum]"]
["c42141.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cell division (GO:0051301);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA);; ATPase family associated with various cellular activities (AAA)","Cell division control protein 48 homolog B OS=Arabidopsis thaliana OX=3702 GN=CDC48B PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: cell division control protein 48 homolog B-like [Gossypium hirsutum]"]
["c16939.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105802336 isoform X1 [Gossypium raimondii] "]
["c50750.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; ","--","--","--","Probable lipid transfer;; Protease inhibitor/seed storage/LTP family","Protein YLS3 OS=Arabidopsis thaliana OX=3702 GN=YLS3 PE=2 SV=1","S","Function unknown","protein YLS3-like [Durio zibethinus]"]
["c24144.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Cotton fibre expressed protein","--","--","--","PREDICTED: uncharacterized protein LOC108452721 [Gossypium arboreum]"]
["c60978.graph_c0","--","--","--","K05759|2.17877e-07|fve:101294035|K05759 profilin | (RefSeq) profilin","[Z]","Cytoskeleton ","--","Profilin-2 OS=Hevea brasiliensis OX=3981 GN=PRO2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: profilin [Fragaria vesca subsp. vesca]"]
["c24534.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02873|4.02695e-17|osa:4339923|K02873 large subunit ribosomal protein L13e | (RefSeq) 60S ribosomal protein L13-1","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L13e","60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein LEMA_P060600.1 [Leptosphaeria maculans JN3] "]
["c47366.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","K09496|0|tcc:TCM_012527|K09496 T-complex protein 1 subunit delta | (RefSeq) TCP-1/cpn60 chaperonin family protein","[O]","Posttranslational modification, protein turnover, chaperones ","TCP-1/cpn60 chaperonin family","T-complex protein 1 subunit delta OS=Arabidopsis thaliana OX=3702 GN=CCT4 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","T-complex protein 1, delta subunit [Trema orientalis]"]
["c94530.graph_c0","--","--","--","--","--","--","--","--","--","--","cytochrome P450 [Stagonospora sp. SRC1lsM3a]"]
["c36103.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: squamosa promoter-binding-like protein 1 [Gossypium arboreum]"]
["c30246.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|1.877e-79|gra:105774640|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor TT2-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor TT2 OS=Arabidopsis thaliana OX=3702 GN=TT2 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TT2-like [Gossypium arboreum]"]
["c31529.graph_c0","--","--","Biological Process: translational initiation (GO:0006413);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","[J]","Translation, ribosomal structure and biogenesis ","--","--","J","Translation, ribosomal structure and biogenesis","hypothetical protein LY90DRAFT_216679 [Neocallimastix californiae]"]
["c44112.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: guard cell fate commitment (GO:0010377);; Molecular Function: amino acid binding (GO:0016597);; Biological Process: positive regulation of cell differentiation (GO:0045597);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: negative regulation of cell division (GO:0051782);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor FAMA OS=Arabidopsis thaliana OX=3702 GN=FAMA PE=1 SV=1","K","Transcription","PREDICTED: transcription factor FAMA isoform X2 [Gossypium arboreum]"]
["c42315.graph_c0","--","--","Biological Process: response to abscisic acid (GO:0009737);; ","--","[R]","General function prediction only ","GYF domain","--","S","Function unknown","hypothetical protein GOBAR_DD22519 [Gossypium barbadense]"]
["c41748.graph_c0","[F]","Nucleotide transport and metabolism ","Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: UMP kinase activity (GO:0033862);; Biological Process: nucleotide phosphorylation (GO:0046939);; ","K09903|0|tcc:TCM_001405|K09903 uridylate kinase [EC:2.7.4.22] | (RefSeq) Amino acid kinase family protein","--","--","Amino acid kinase family","Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays OX=4577 GN=AKHSDH2 PE=2 SV=1","F","Nucleotide transport and metabolism","PREDICTED: uridylate kinase [Theobroma cacao]"]
["c23733.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","EamA-like transporter family","WAT1-related protein At5g64700 OS=Arabidopsis thaliana OX=3702 GN=At5g64700 PE=2 SV=1","S","Function unknown","PREDICTED: WAT1-related protein At5g64700 [Gossypium raimondii] "]
["c47471.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","--","[D]","Cell cycle control, cell division, chromosome partitioning ","RNA recognition motif 2","Protein MEI2-like 4 OS=Oryza sativa subsp. japonica OX=39947 GN=ML4 PE=2 SV=1","S","Function unknown","PREDICTED: protein MEI2-like 4 [Gossypium arboreum]"]
["c54489.graph_c0","--","--","Biological Process: singlet oxygen-mediated programmed cell death (GO:0010343);; Cellular Component: thylakoid membrane (GO:0042651);; ","--","--","--","--","Protein EXECUTER 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=EX2 PE=2 SV=1","S","Function unknown","protein EXECUTER 2, chloroplastic isoform X1 [Durio zibethinus]"]
["c93702.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF677);; Protein BYPASS1-related","UPF0496 protein At2g18630 OS=Arabidopsis thaliana OX=3702 GN=At2g18630 PE=2 SV=3","S","Function unknown","UPF0496 protein At2g18630-like [Manihot esculenta] "]
["c36249.graph_c0","[R]","General function prediction only ","Molecular Function: catalytic activity (GO:0003824);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: chloroplast fission (GO:0010020);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: coenzyme binding (GO:0050662);; ","K07071|0|gra:105795359|K07071 uncharacterized protein | (RefSeq) epimerase family protein SDR39U1 homolog, chloroplastic","[F]","Nucleotide transport and metabolism ","Domain of unknown function (DUF1731);; NAD dependent epimerase/dehydratase family;; NAD(P)H-binding;; Male sterility protein","Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GC1 PE=2 SV=2","S","Function unknown","epimerase family protein SDR39U1 homolog, chloroplastic isoform X2 [Durio zibethinus]"]
["c37638.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; ","--","--","--","Subtilase family;; Subtilase family","Subtilisin-like protease SBT3.7 OS=Arabidopsis thaliana OX=3702 GN=SBT3.7 PE=3 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_013G033000 [Gossypium raimondii]"]
["c66216.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: adenosylhomocysteinase activity (GO:0004013);; Biological Process: one-carbon metabolic process (GO:0006730);; ","K01251|5.56395e-48|mdm:103425185|K01251 adenosylhomocysteinase [EC:3.3.1.1] | (RefSeq) adenosylhomocysteinase","[H]","Coenzyme transport and metabolism ","S-adenosyl-L-homocysteine hydrolase","Adenosylhomocysteinase OS=Medicago sativa OX=3879 GN=SAHH PE=2 SV=1","H","Coenzyme transport and metabolism","adenosylhomocysteinase, partial [Prunus persica]"]
["c48415.graph_c1","--","--","--","--","[P]","Inorganic ion transport and metabolism ","Tesmin/TSO1-like CXC domain, cysteine-rich domain","Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana OX=3702 GN=TCX2 PE=1 SV=1","S","Function unknown","PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 [Gossypium arboreum] "]
["c57716.graph_c0","--","--","--","--","--","--","--","Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105766760 [Gossypium raimondii] "]
["c7269.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105778718 [Gossypium raimondii] "]
["c43839.graph_c0","[F]","Nucleotide transport and metabolism ","--","K00759|3.4437e-43|gra:105765128|K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] | (RefSeq) adenine phosphoribosyltransferase 4","[F]","Nucleotide transport and metabolism ","Phosphoribosyl transferase domain","Adenine phosphoribosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=APT4 PE=1 SV=1","F","Nucleotide transport and metabolism","PREDICTED: adenine phosphoribosyltransferase 4 isoform X1 [Gossypium arboreum]"]
["c63275.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC108488038 [Gossypium arboreum]"]
["c69668.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: DNA recombination (GO:0006310);; Cellular Component: plastid (GO:0009536);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_041406 [Vitis vinifera]"]
["c45230.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: metabolic process (GO:0008152);; Molecular Function: transaminase activity (GO:0008483);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydroxyproline O-arabinosyltransferase activity (GO:1990585);; ","K20782|0|tcc:TCM_045112|K20782 hydroxyproline O-arabinosyltransferase [EC:2.4.2.58] | (RefSeq) Uncharacterized protein isoform 1","--","--","--","Hydroxyproline O-arabinosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=HPAT3 PE=1 SV=1","S","Function unknown","hydroxyproline O-arabinosyltransferase 3-like [Herrania umbratica] "]
["c77495.graph_c0","[CI]","Energy production and conversion ;; Lipid transport and metabolism ","Molecular Function: FMN binding (GO:0010181);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[C]","Energy production and conversion ","Cytochrome b5-like Heme/Steroid binding domain","Cytochrome b5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0108800 PE=2 SV=2","CI","--","FMN binding [Ascochyta rabiei]"]
["c40228.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA-dependent DNA replication (GO:0006261);; Biological Process: DNA biosynthetic process (GO:0071897);; ","K02349|0|gra:105782310|K02349 DNA polymerase theta [EC:2.7.7.7] | (RefSeq) helicase and polymerase-containing protein TEBICHI","[R]","General function prediction only ","DNA polymerase family A;; DEAD/DEAH box helicase","Helicase and polymerase-containing protein TEBICHI OS=Arabidopsis thaliana OX=3702 GN=TEB PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: helicase and polymerase-containing protein TEBICHI isoform X3 [Gossypium arboreum]"]
["c16550.graph_c1","--","--","Molecular Function: symporter activity (GO:0015293);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","--","[E]","Amino acid transport and metabolism ","Transmembrane amino acid transporter protein","Amino acid transporter AVT6B OS=Arabidopsis thaliana OX=3702 GN=AVT6B PE=3 SV=1","E","Amino acid transport and metabolism","PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Gossypium raimondii] "]
["c43488.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105787508 [Gossypium raimondii] "]
["c42162.graph_c0","[C]","Energy production and conversion ","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Sucrase/ferredoxin-like","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107897909 [Gossypium hirsutum]"]
["c24889.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107962179 [Gossypium hirsutum]"]
["c44552.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF296)","AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana OX=3702 GN=AHL14 PE=1 SV=1","S","Function unknown","PREDICTED: AT-hook motif nuclear-localized protein 14 [Theobroma cacao] "]
["c27447.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: L-aspartate:2-oxoglutarate aminotransferase activity (GO:0004069);; Biological Process: cellular amino acid metabolic process (GO:0006520);; Biological Process: biosynthetic process (GO:0009058);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Molecular Function: L-phenylalanine:2-oxoglutarate aminotransferase activity (GO:0080130);; ","K14454|0|gra:105764130|K14454 aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | (RefSeq) aspartate aminotransferase, cytoplasmic","[E]","Amino acid transport and metabolism ","Aminotransferase class I and II","Aspartate aminotransferase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ASP3 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: aspartate aminotransferase, cytoplasmic [Gossypium raimondii] "]
["c94750.graph_c0","--","--","--","--","--","--","NADH-ubiquinone reductase complex 1 MLRQ subunit","--","--","--","--"]
["c35407.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","WRKY DNA -binding domain","Probable WRKY transcription factor 70 OS=Arabidopsis thaliana OX=3702 GN=WRKY70 PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_AA24600 [Gossypium barbadense]"]
["c53229.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111307725 [Durio zibethinus]"]
["c60925.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","--","--","PREDICTED: NAC domain-containing protein 30-like [Gossypium hirsutum]"]
["c90074.graph_c0","--","--","--","--","--","--","PMP-22/EMP/MP20/Claudin tight junction","--","S","Function unknown","--"]
["c17802.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Gossypium raimondii]"]
["c22202.graph_c0","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","ABC transporter transmembrane region;; ABC transporter","ABC transporter B family member 25 OS=Oryza sativa subsp. japonica OX=39947 GN=OsABCB25 PE=2 SV=1","V","Defense mechanisms","ABC transporter B family member 25-like [Herrania umbratica]"]
["c94223.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: extrinsic component of membrane (GO:0019898);; Cellular Component: thylakoid lumen (GO:0031977);; ","--","--","--","--","PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1","S","Function unknown","PREDICTED: psbP domain-containing protein 6, chloroplastic [Fragaria vesca subsp. vesca]"]
["c18701.graph_c1","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","--","--","PREDICTED: E3 ubiquitin-protein ligase RNF12-A [Theobroma cacao]"]
["c77748.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Molecular Function: isomerase activity (GO:0016853);; ","K03768|8.21619e-13|mis:MICPUN_84244|K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] | (RefSeq) CYP-B; peptidylprolyl isomerase, precursor","[O]","Posttranslational modification, protein turnover, chaperones ","--","Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP20-3 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","peptidyl-prolyl cis-trans isomerase [Byssochlamys spectabilis No. 5]"]
["c14877.graph_c0","--","--","Biological Process: response to stress (GO:0006950);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Universal stress protein family","--","T","Signal transduction mechanisms","PREDICTED: universal stress protein A-like protein [Gossypium raimondii] "]
["c56509.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; Pentatricopeptide repeat domain;; PPR repeat;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Gossypium raimondii] "]
["c34020.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (GO:0004365);; Biological Process: glucose metabolic process (GO:0006006);; Biological Process: glycolytic process (GO:0006096);; Molecular Function: NADP binding (GO:0050661);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00134|4.65511e-154|bdi:100838646|K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] | (RefSeq) glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic-like","[G]","Carbohydrate transport and metabolism ","Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain;; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain","Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAPCP1 PE=1 SV=1","G","Carbohydrate transport and metabolism","glyceraldehyde-3-phosphate dehydrogenase [Conidiobolus coronatus NRRL 28638]"]
["c40502.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity (GO:0015018);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: xylosyltransferase activity (GO:0042285);; ","K20869|2.69425e-128|gra:105799808|K20869 putative beta-1,4-xylosyltransferase IRX9 [EC:2.4.2.-] | (RefSeq) probable beta-1,4-xylosyltransferase IRX9","[O]","Posttranslational modification, protein turnover, chaperones ","Glycosyltransferase family 43;; Glycosyltransferase family 43","Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana OX=3702 GN=IRX9 PE=2 SV=1","S","Function unknown","hypothetical protein B456_006G168500 [Gossypium raimondii]"]
["c37953.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: positive regulation of cell proliferation (GO:0008284);; Molecular Function: lipid binding (GO:0008289);; Biological Process: primary shoot apical meristem specification (GO:0010072);; Biological Process: xylem development (GO:0010089);; Biological Process: positive regulation of cell differentiation (GO:0045597);; ","K09338|8.82684e-23|tcc:TCM_037207|K09338 homeobox-leucine zipper protein | (RefSeq) Class III HD-Zip protein 8 isoform 1","--","--","--","Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana OX=3702 GN=ATHB-15 PE=1 SV=1","K","Transcription","Class III HD-Zip protein 8 isoform 1 [Theobroma cacao]"]
["c28939.graph_c0","--","--","--","--","[R]","General function prediction only ","zinc-binding in reverse transcriptase;; Reverse transcriptase (RNA-dependent DNA polymerase);; Reverse transcriptase-like","Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107889922 [Gossypium hirsutum]"]
["c49916.graph_c0","--","--","Cellular Component: histone acetyltransferase complex (GO:0000123);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Biological Process: histone acetylation (GO:0016573);; ","K08874|0|gra:105787477|K08874 transformation/transcription domain-associated protein | (RefSeq) transformation/transcription domain-associated protein-like","[TBLD]","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH121 OS=Arabidopsis thaliana OX=3702 GN=BHLH121 PE=1 SV=1","BDLTU","--","hypothetical protein B456_003G009700 [Gossypium raimondii]"]
["c38288.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: cellulase activity (GO:0008810);; Biological Process: cellulose catabolic process (GO:0030245);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","Glycosyl hydrolase family 9;; Carbohydrate binding domain CBM49","Endoglucanase 5 OS=Arabidopsis thaliana OX=3702 GN=At1g48930 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: endoglucanase 5-like [Gossypium hirsutum]"]
["c53721.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","--","Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana OX=3702 GN=SRF8 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA39075 [Gossypium barbadense]"]
["c79283.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","--","--","--","C2 domain","--","S","Function unknown","hypothetical protein AXX17_AT1G06930 [Arabidopsis thaliana]"]
["c33148.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP biosynthetic process (GO:0006754);; Molecular Function: hydrogen-exporting ATPase activity, phosphorylative mechanism (GO:0008553);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","K01535|1.23224e-27|gra:105767768|K01535 H+-transporting ATPase [EC:3.6.3.6] | (RefSeq) ATPase 9, plasma membrane-type","[P]","Inorganic ion transport and metabolism ","Cation transporter/ATPase, N-terminus","Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia OX=4092 GN=PMA4 PE=2 SV=1","P","Inorganic ion transport and metabolism","plasma membrane ATPase-like isoform X2 [Durio zibethinus]"]
["c44219.graph_c1","--","--","--","--","--","--","--","--","--","--","PREDICTED: nudix hydrolase 2-like [Gossypium hirsutum] "]
["c1126.graph_c0","--","--","--","--","--","--","--","--","C","Energy production and conversion","--"]
["c26269.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleolus (GO:0005730);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Molecular Function: small ribosomal subunit rRNA binding (GO:0070181);; ","K02953|1.13106e-79|pop:POPTR_0012s14440g|K02953 small subunit ribosomal protein S13e | (RefSeq) POPTRDRAFT_570579; ribosomal protein S13","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal S13/S15 N-terminal domain;; Ribosomal protein S15","40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Ribosomal 40S subunit protein S13 [Rhizophagus irregularis DAOM 181602] "]
["c38639.graph_c0","--","--","Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);; Biological Process: phosphatidylinositol phosphorylation (GO:0046854);; ","K00889|0|gra:105791551|K00889 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68] | (RefSeq) phosphatidylinositol 4-phosphate 5-kinase 10-like","[T]","Signal transduction mechanisms ","Phosphatidylinositol-4-phosphate 5-Kinase","Phosphatidylinositol 4-phosphate 5-kinase 10 OS=Arabidopsis thaliana OX=3702 GN=PIP5K10 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 10-like [Gossypium hirsutum] "]
["c58518.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","--","--","--","--","WAT1-related protein At1g21890-like isoform X2 [Durio zibethinus]"]
["c37323.graph_c0","[R]","General function prediction only ","--","--","[H]","Coenzyme transport and metabolism ","CobW/HypB/UreG, nucleotide-binding domain;; CobW/HypB/UreG, nucleotide-binding domain;; Cobalamin synthesis protein cobW C-terminal domain","--","S","Function unknown","COBW domain-containing 1 [Gossypium arboreum]"]
["c18050.graph_c1","--","--","--","--","--","--","PAP_fibrillin","Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu OX=55188 GN=PAP PE=2 SV=1","S","Function unknown","PREDICTED: plastid-lipid-associated protein, chloroplastic-like [Gossypium hirsutum]"]
["c23541.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA16337 [Gossypium barbadense]"]
["c95514.graph_c0","--","--","--","--","--","--","Thrombin light chain;; Trypsin","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c44424.graph_c0","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; D-mannose binding lectin;; PAN-like domain","G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana OX=3702 GN=SD25 PE=1 SV=1","T","Signal transduction mechanisms","G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Durio zibethinus]"]
["c47728.graph_c0","--","--","--","--","--","--","Proline-rich nuclear receptor coactivator motif","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107914765 [Gossypium hirsutum] "]
["c64876.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; ","K14484|1.45955e-55|fve:101305767|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA16","--","--","AUX/IAA family","Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1","K","Transcription","PREDICTED: auxin-responsive protein IAA16 [Fragaria vesca subsp. vesca]"]
["c45742.graph_c0","--","--","--","--","--","--","--","Protein SHORTAGE IN CHIASMATA 1 OS=Arabidopsis thaliana OX=3702 GN=SHOC1 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107943477, partial [Gossypium hirsutum]"]
["c43378.graph_c1","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K06685|9.65798e-73|sita:101782052|K06685 MOB kinase activator 1 | (RefSeq) MOB kinase activator-like 1A","[D]","Cell cycle control, cell division, chromosome partitioning ","Mob1/phocein family;; Mob1/phocein family","MOB kinase activator-like 1B OS=Arabidopsis thaliana OX=3702 GN=MOB1B PE=2 SV=1","S","Function unknown","Maintenance of ploidy protein mob1, putative [Ricinus communis]"]
["c41392.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108484727 [Gossypium arboreum] "]
["c29804.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","K05349|0|gra:105782961|K05349 beta-glucosidase [EC:3.2.1.21] | (RefSeq) lysosomal beta glucosidase-like","--","--","Glycosyl hydrolase family 3 N terminal domain;; Glycosyl hydrolase family 3 C-terminal domain","Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BXL2 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: beta-glucosidase BoGH3B-like [Gossypium hirsutum]"]
["c24837.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","Dof domain, zinc finger","Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV=1","S","Function unknown","PREDICTED: dof zinc finger protein DOF5.1-like [Gossypium arboreum]"]
["c43434.graph_c0","--","--","--","--","--","--","--","Uncharacterized protein At4g37920 OS=Arabidopsis thaliana OX=3702 GN=At4g37920 PE=2 SV=2","S","Function unknown","PREDICTED: uncharacterized protein At4g37920, chloroplastic [Gossypium raimondii] "]
["c46964.graph_c1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","S-norcoclaurine synthase 1 OS=Coptis japonica OX=3442 GN=NCS1 PE=1 SV=1","S","Function unknown","PREDICTED: S-norcoclaurine synthase 1-like [Gossypium hirsutum]"]
["c16029.graph_c0","--","--","--","--","--","--","--","F-box protein At5g39450 OS=Arabidopsis thaliana OX=3702 GN=At5g39450 PE=2 SV=1","S","Function unknown","PREDICTED: F-box protein At5g39450 [Gossypium raimondii] "]
["c44773.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: mRNA cleavage factor complex (GO:0005849);; Biological Process: mRNA polyadenylation (GO:0006378);; Biological Process: mRNA cleavage (GO:0006379);; Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation (GO:0006388);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: polynucleotide 5'-hydroxyl-kinase activity (GO:0051731);; ","K14399|0|gra:105779456|K14399 polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] | (RefSeq) protein CLP1 homolog","[A]","RNA processing and modification ","mRNA cleavage and polyadenylation factor CLP1 P-loop;; Pre-mRNA cleavage complex II protein Clp1;; N-terminal beta-sandwich domain of polyadenylation factor","Protein CLP1 homolog OS=Arabidopsis thaliana OX=3702 GN=CLPS3 PE=1 SV=1","A","RNA processing and modification","hypothetical protein GOBAR_AA01098 [Gossypium barbadense]"]
["c5290.graph_c0","--","--","Biological Process: response to light stimulus (GO:0009416);; Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting in photosystem I (GO:0009768);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: pigment binding (GO:0031409);; Molecular Function: metal ion binding (GO:0046872);; ","K08912|4.94413e-111|rcu:8265899|K08912 light-harvesting complex II chlorophyll a/b binding protein 1 | (RefSeq) chlorophyll a-b binding protein of LHCII type 1","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba OX=3728 GN=CAB1 PE=3 SV=1","I","Lipid transport and metabolism","chlorophyll a-b binding protein of LHCII type 1-like [Carica papaya] "]
["c39935.graph_c2","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: intracellular protein transport (GO:0006886);; Molecular Function: Ran GTPase binding (GO:0008536);; Cellular Component: integral component of membrane (GO:0016021);; ","K20223|1.16375e-33|tcc:TCM_020056|K20223 importin-7 | (RefSeq) Importin-7, putative isoform 1","[YU]","--","--","Importin beta-like SAD2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g59020 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA09154 [Gossypium barbadense]"]
["c44245.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Tetratricopeptide repeat","Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E3 PE=3 SV=1","S","Function unknown","PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Gossypium raimondii] "]
["c32520.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: intracellular protein transport (GO:0006886);; Molecular Function: Ran GTPase binding (GO:0008536);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[YU]","--","--","--","O","Posttranslational modification, protein turnover, chaperones","ARM repeat superfamily protein isoform 4 [Theobroma cacao]"]
["c41305.graph_c1","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD25674 [Gossypium barbadense]"]
["c5528.graph_c1","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD36523 [Gossypium barbadense]"]
["c32333.graph_c0","--","--","Cellular Component: spliceosomal complex (GO:0005681);; Biological Process: RNA splicing (GO:0008380);; ","K12817|2.52025e-28|gra:105790718|K12817 pre-mRNA-splicing factor 18 | (RefSeq) pre-mRNA-splicing factor 18-like","--","--","--","--","A","RNA processing and modification","hypothetical protein GOBAR_AA07201 [Gossypium barbadense]"]
["c9071.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: aconitate hydratase activity (GO:0003994);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuole (GO:0005773);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Biological Process: isocitrate metabolic process (GO:0006102);; Biological Process: defense response (GO:0006952);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: response to salt stress (GO:0009651);; Biological Process: ethylene biosynthetic process (GO:0009693);; Molecular Function: 1-aminocyclopropane-1-carboxylate oxidase activity (GO:0009815);; Molecular Function: L-ascorbic acid binding (GO:0031418);; Molecular Function: mRNA 5'-UTR binding (GO:0048027);; Cellular Component: apoplast (GO:0048046);; Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: cellular response to potassium ion starvation (GO:0051365);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; Biological Process: cellular response to iron ion (GO:0071281);; Biological Process: cellular response to fatty acid (GO:0071398);; Biological Process: cellular response to nitric oxide (GO:0071732);; ","K05933|1.95331e-175|gra:105791688|K05933 aminocyclopropanecarboxylate oxidase [EC:1.14.17.4] | (RefSeq) 1-aminocyclopropane-1-carboxylate oxidase 1","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana OX=3702 GN=ACO1 PE=2 SV=1","S","Function unknown","PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 1 [Gossypium raimondii] "]
["c38746.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K12189|7.42381e-88|gra:105789389|K12189 ESCRT-II complex subunit VPS25 | (RefSeq) vacuolar protein sorting-associated protein 25","[S]","Function unknown ","ESCRT-II complex subunit","Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana OX=3702 GN=VPS25 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein B456_003G186000 [Gossypium raimondii]"]
["c36018.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Molecular Function: zinc ion binding (GO:0008270);; ","K11643|1.40401e-116|gra:105768713|K11643 chromodomain-helicase-DNA-binding protein 4 [EC:3.6.4.12] | (RefSeq) helicase protein MOM1-like","[K]","Transcription ","--","Helicase protein MOM1 OS=Arabidopsis thaliana OX=3702 GN=MOM1 PE=1 SV=1","S","Function unknown","PREDICTED: helicase protein MOM1-like isoform X1 [Gossypium raimondii] "]
["c37295.graph_c0","--","--","--","K14487|6.12419e-154|tcc:TCM_031553|K14487 auxin responsive GH3 gene family | (RefSeq) Indole-3-acetic acid-amido synthetase GH3.17","--","--","GH3 auxin-responsive promoter;; GH3 auxin-responsive promoter","Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana OX=3702 GN=GH3.9 PE=2 SV=1","S","Function unknown","Indole-3-acetic acid-amido synthetase GH3.17 [Theobroma cacao]"]
["c27109.graph_c0","--","--","--","--","[K]","Transcription ","--","Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2","K","Transcription","agamous-like MADS-box protein AGL9 homolog isoform X3 [Helianthus annuus]"]
["c47303.graph_c1","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14484|4.7017e-15|pvu:PHAVU_007G109700g|K14484 auxin-responsive protein IAA | (RefSeq) hypothetical protein","--","--","--","Auxin-induced protein IAA4 OS=Pisum sativum OX=3888 GN=IAA4/5 PE=1 SV=1","K","Transcription","auxin responsive protein IAA-Re [Gossypium barbadense]"]
["c6985.graph_c1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Biological Process: red or far-red light signaling pathway (GO:0010017);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620);; Cellular Component: cell part (GO:0044464);; Biological Process: single-organism metabolic process (GO:0044710);; Biological Process: organic substance metabolic process (GO:0071704);; ","K13356|7.82902e-23|ath:AT5G22500|K13356 alcohol-forming fatty acyl-CoA reductase [EC:1.2.1.84] | (RefSeq) FAR1; fatty acid reductase 1","[I]","Lipid transport and metabolism ","Male sterility protein","Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1","S","Function unknown","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c52366.graph_c0","--","--","--","--","--","--","Dirigent-like protein","Dirigent protein 1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=2 SV=1","S","Function unknown","PREDICTED: dirigent protein 1-like [Gossypium arboreum]"]
["c36814.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: oxidation-reduction process (GO:0055114);; ","K14424|1.16601e-24|gra:105782837|K14424 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase [EC:1.14.13.72] | (RefSeq) methylsterol monooxygenase 2-2","[I]","Lipid transport and metabolism ","--","Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana OX=3702 GN=SMO2-2 PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein B456_013G261900 [Gossypium raimondii]"]
["c72520.graph_c0","--","--","--","K15118|1.84306e-11|cvr:CHLNCDRAFT_145279|K15118 solute carrier family 25, member 38 | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","Mitochondrial carrier protein","Mitochondrial carrier protein CoAc2 OS=Zea mays OX=4577 GN=COAC2 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","Mitochondrial Carrier (MC) Family [Achlya hypogyna]"]
["c26704.graph_c2","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: rRNA processing (GO:0006364);; Cellular Component: preribosome, small subunit precursor (GO:0030688);; ","K14849|5.38273e-95|tcc:TCM_034656|K14849 ribosomal RNA-processing protein 1 | (RefSeq) Ribosomal RNA processing protein 1 B, putative","[A]","RNA processing and modification ","Nucleolar protein,Nop52","--","J","Translation, ribosomal structure and biogenesis","ribosomal RNA processing protein 1 homolog [Durio zibethinus]"]
["c69042.graph_c0","--","--","--","--","--","--","--","--","--","--","Regulator of chromosome condensation, RCC1 [Corchorus capsularis]"]
["c87239.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108455463 [Gossypium arboreum]"]
["c89952.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: cysteine synthase activity (GO:0004124);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: cysteine biosynthetic process from serine (GO:0006535);; Molecular Function: transferase activity (GO:0016740);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K01738|2.22572e-72|dosa:Os12t0625000-01|K01738 cysteine synthase A [EC:2.5.1.47] | (RAP-DB) Os12g0625000; Similar to Cysteine synthase.","[E]","Amino acid transport and metabolism ","Pyridoxal-phosphate dependent enzyme","Cysteine synthase OS=Oryza sativa subsp. japonica OX=39947 GN=RCS1 PE=2 SV=2","E","Amino acid transport and metabolism","cysteine synthase [Oryza sativa Indica Group]"]
["c33146.graph_c0","--","--","Molecular Function: transcription cofactor activity (GO:0003712);; Molecular Function: histone acetyltransferase activity (GO:0004402);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: histone acetylation (GO:0016573);; ","K04498|4.96289e-11|tcc:TCM_027598|K04498 E1A/CREB-binding protein [EC:2.3.1.48] | (RefSeq) Histone acetyltransferase of the CBP family 12 isoform 1","--","--","--","--","--","--","PREDICTED: histone acetyltransferase HAC1-like isoform X2 [Gossypium arboreum]"]
["c47090.graph_c0","--","--","--","--","[R]","General function prediction only ","ENT domain","Protein EMSY-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EML3 PE=1 SV=1","S","Function unknown","PREDICTED: protein EMSY-LIKE 3-like isoform X2 [Gossypium raimondii] "]
["c87449.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: anion binding (GO:0043168);; Biological Process: small molecule metabolic process (GO:0044281);; Biological Process: organic substance metabolic process (GO:0071704);; ","K01958|3.63041e-12|vcn:VOLCADRAFT_102707|K01958 pyruvate carboxylase [EC:6.4.1.1] | (RefSeq) pyc1; pyruvate carboxylase","[C]","Energy production and conversion ","Carbamoyl-phosphate synthase L chain, ATP binding domain","Biotin carboxylase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAC2 PE=1 SV=1","C","Energy production and conversion","Pyruvate carboxylase [Zancudomyces culisetae]"]
["c3875.graph_c1","--","--","--","--","[R]","General function prediction only ","zinc-binding in reverse transcriptase","--","V","Defense mechanisms","reverse transcriptase [Corchorus capsularis]"]
["c10412.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cell division (GO:0051301);; ","--","--","--","--","Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2","--","--","PREDICTED: tobamovirus multiplication protein 3-like [Gossypium arboreum] "]
["c64881.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","No apical meristem (NAM) protein","NAC domain-containing protein 21/22 OS=Arabidopsis thaliana OX=3702 GN=NAC021 PE=1 SV=2","S","Function unknown","hypothetical protein GOBAR_AA25904 [Gossypium barbadense]"]
["c54336.graph_c0","--","--","--","K04650|3.33801e-24|gra:105776280|K04650 nuclear receptor co-repressor 1 | (RefSeq) uncharacterized LOC105776280","--","--","--","--","K","Transcription","uncharacterized protein LOC110425155 isoform X3 [Herrania umbratica]"]
["c42892.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Gossypium hirsutum]"]
["c33767.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: RNA-dependent DNA biosynthetic process (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","L","Replication, recombination and repair","retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]"]
["c38347.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD05637 [Gossypium barbadense]"]
["c22493.graph_c0","--","--","Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; Molecular Function: chaperone binding (GO:0051087);; ","K01555|1.0215e-78|tcc:TCM_030354|K01555 fumarylacetoacetase [EC:3.7.1.2] | (RefSeq) Fumarylacetoacetase","--","--","BAG domain","BAG family molecular chaperone regulator 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BAG5 PE=1 SV=1","S","Function unknown","BAG family molecular chaperone regulator 5, mitochondrial [Durio zibethinus]"]
["c56659.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","E3 SUMO-protein ligase RanBP2 [Durio zibethinus]"]
["c8498.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen (GO:0016709);; Molecular Function: heme binding (GO:0020037);; Biological Process: secondary metabolite biosynthetic process (GO:0044550);; Biological Process: oxidation-reduction process (GO:0055114);; ","K20619|0|gra:105787873|K20619 cytochrome P450 family 78 subfamily A | (RefSeq) cytochrome P450 78A7-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 78A7 OS=Arabidopsis thaliana OX=3702 GN=CYP78A7 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: cytochrome P450 78A7-like [Gossypium raimondii] "]
["c35919.graph_c1","--","--","--","--","--","--","--","--","--","--","probable S-sulfocysteine synthase, chloroplastic isoform X3 [Durio zibethinus]"]
["c77853.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","--","--","Transglycosylase","--","--","--","Penicillin-binding protein 1A [Beauveria bassiana D1-5]"]
["c45986.graph_c1","[K]","Transcription ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K13420|5.96686e-87|tcc:TCM_031974|K13420 LRR receptor-like serine/threonine-protein kinase FLS2 [EC:2.7.11.1] | (RefSeq) Leucine-rich repeat protein kinase family protein, putative","--","--","Leucine rich repeat N-terminal domain;; Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine rich repeat;; Leucine Rich Repeat","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1","S","Function unknown","LRR receptor-like serine/threonine-protein kinase GSO2 [Durio zibethinus]"]
["c28813.graph_c0","--","--","Molecular Function: aromatic amino acid transmembrane transporter activity (GO:0015173);; Molecular Function: neutral amino acid transmembrane transporter activity (GO:0015175);; Biological Process: aromatic amino acid transport (GO:0015801);; Biological Process: neutral amino acid transport (GO:0015804);; Cellular Component: integral component of membrane (GO:0016021);; ","K14209|7.84098e-172|gra:105786267|K14209 solute carrier family 36 (proton-coupled amino acid transporter) | (RefSeq) proton-coupled amino acid transporter 3","[E]","Amino acid transport and metabolism ","Transmembrane amino acid transporter protein;; Transmembrane amino acid transporter protein","Amino acid transporter ANT1 OS=Arabidopsis thaliana OX=3702 GN=ANT1 PE=1 SV=1","E","Amino acid transport and metabolism","hypothetical protein B456_002G233100 [Gossypium raimondii]"]
["c47843.graph_c1","[P]","Inorganic ion transport and metabolism ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: response to ethylene (GO:0009723);; Biological Process: regulation of stomatal movement (GO:0010119);; Biological Process: copper ion transmembrane transport (GO:0035434);; Molecular Function: copper-transporting ATPase activity (GO:0043682);; ","K17686|0|gra:105763074|K17686 Cu+-exporting ATPase [EC:3.6.3.54] | (RefSeq) copper-transporting ATPase RAN1","[P]","Inorganic ion transport and metabolism ","E1-E2 ATPase;; haloacid dehalogenase-like hydrolase;; Heavy-metal-associated domain;; haloacid dehalogenase-like hydrolase","Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana OX=3702 GN=RAN1 PE=1 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: copper-transporting ATPase RAN1-like [Gossypium hirsutum]"]
["c53949.graph_c0","[R]","General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","WD domain, G-beta repeat","Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1","S","Function unknown","hypothetical protein CDL15_Pgr013530 [Punica granatum] "]
["c55570.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: cellulose synthase (UDP-forming) activity (GO:0016760);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: cell wall organization (GO:0071555);; ","K10999|6.00761e-50|gra:105780427|K10999 cellulose synthase A [EC:2.4.1.12] | (RefSeq) cellulose synthase A catalytic subunit 7 [UDP-forming]-like","--","--","--","Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica OX=39947 GN=CESA9 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like isoform X1 [Gossypium arboreum] "]
["c31203.graph_c0","--","--","--","--","[W]","Extracellular structures ","Galactoside-binding lectin","--","S","Function unknown","--"]
["c41990.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|0|tcc:TCM_011820|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) Major facilitator superfamily protein isoform 1","[E]","Amino acid transport and metabolism ","POT family","Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana OX=3702 GN=NPF3.1 PE=2 SV=1","E","Amino acid transport and metabolism","protein NRT1/ PTR FAMILY 3.1-like [Herrania umbratica] "]
["c48867.graph_c1","--","--","Molecular Function: structural molecule activity (GO:0005198);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: retrograde vesicle-mediated transport, Golgi to ER (GO:0006890);; Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891);; Cellular Component: COPI vesicle coat (GO:0030126);; ","K17268|5.17424e-95|gra:105769796|K17268 coatomer subunit epsilon | (RefSeq) coatomer subunit epsilon-1","[U]","Intracellular trafficking, secretion, and vesicular transport ","Coatomer epsilon subunit;; Tetratricopeptide repeat;; Coatomer epsilon subunit","Coatomer subunit epsilon-1 OS=Arabidopsis thaliana OX=3702 GN=At1g30630 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: coatomer subunit epsilon-1 [Gossypium arboreum]"]
["c53415.graph_c0","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: heat shock protein binding (GO:0031072);; Molecular Function: unfolded protein binding (GO:0051082);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105799840 [Gossypium raimondii] "]
["c39544.graph_c0","--","--","Cellular Component: protein phosphatase 4 complex (GO:0030289);; Biological Process: regulation of catalytic activity (GO:0050790);; ","K15425|6.8863e-61|gra:105801231|K15425 serine/threonine-protein phosphatase 4 regulatory subunit 2 | (RefSeq) serine/threonine-protein phosphatase 4 regulatory subunit 2","[R]","General function prediction only ","--","--","T","Signal transduction mechanisms","serine/threonine-protein phosphatase 4 regulatory subunit 2 [Durio zibethinus]"]
["c33218.graph_c0","--","--","Cellular Component: thylakoid (GO:0009579);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","CAAD domains of cyanobacterial aminoacyl-tRNA synthetase","Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1","S","Function unknown","PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic-like [Gossypium raimondii] "]
["c5450.graph_c0","--","--","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","--","GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana OX=3702 GN=At4g16230 PE=3 SV=2","--","--","PREDICTED: GDSL esterase/lipase At4g16230-like [Gossypium arboreum]"]
["c37283.graph_c0","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","Domain of unknown function (DUF4149)","--","S","Function unknown","hypothetical protein B456_007G123500 [Gossypium raimondii] "]
["c966.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: glucose metabolic process (GO:0006006);; Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620);; Molecular Function: NADP binding (GO:0050661);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00134|5.52965e-23|gra:105798416|K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] | (RefSeq) glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic-like","[G]","Carbohydrate transport and metabolism ","Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain","Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica OX=39946 GN=GAPC PE=2 SV=1","G","Carbohydrate transport and metabolism","Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]"]
["c72985.graph_c0","--","--","Molecular Function: NADH dehydrogenase activity (GO:0003954);; ","--","[C]","Energy production and conversion ","NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)","NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana OX=3702 GN=At2g02050 PE=3 SV=1","I","Lipid transport and metabolism","hypothetical protein RirG_252610 [Rhizophagus irregularis DAOM 197198w] "]
["c7614.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","K14411|6.03295e-10|tcc:TCM_002303|K14411 RNA-binding protein Musashi | (RefSeq) HnRNP isoform 1","--","--","--","--","S","Function unknown","hypothetical protein CCACVL1_28266 [Corchorus capsularis]"]
["c33679.graph_c0","--","--","--","K12875|1.01127e-49|gra:105763681|K12875 apoptotic chromatin condensation inducer in the nucleus | (RefSeq) uncharacterized LOC105763681","[B]","Chromatin structure and dynamics ","--","--","S","Function unknown","PREDICTED: apoptotic chromatin condensation inducer in the nucleus-like [Gossypium hirsutum]"]
["c21460.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 32 C terminal","Beta-fructofuranosidase, insoluble isoenzyme CWINV1 OS=Arabidopsis thaliana OX=3702 GN=CWINV1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: beta-fructofuranosidase, insoluble isoenzyme CWINV1 isoform X2 [Theobroma cacao]"]
["c50737.graph_c0","--","--","--","--","--","--","Plant self-incompatibility protein S1","S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1","S","Function unknown","S-protein homolog 1-like [Durio zibethinus]"]
["c19508.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA20449 [Gossypium barbadense]"]
["c53828.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","K14457|2.57118e-16|gra:105802315|K14457 2-acylglycerol O-acyltransferase 2 [EC:2.3.1.22] | (RefSeq) diacylglycerol O-acyltransferase 2-like","--","--","--","--","--","--","hypothetical protein GOBAR_AA25662 [Gossypium barbadense]"]
["c31323.graph_c0","--","--","--","--","--","--","C2H2-type zinc finger","Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1","S","Function unknown","zinc finger protein 1-like [Durio zibethinus]"]
["c4816.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Uncharacterized mitochondrial protein AtMg00750 OS=Arabidopsis thaliana OX=3702 GN=AtMg00750 PE=4 SV=1","L","Replication, recombination and repair","hypothetical protein AMTR_s04594p00005750, partial [Amborella trichopoda]"]
["c19453.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: cingulin isoform X2 [Gossypium raimondii]"]
["c26673.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: GTP binding (GO:0005525);; ","K19828|0|gra:105803107|K19828 mitochondrial GTPase 1 | (RefSeq) DAR GTPase 3, chloroplastic","[R]","General function prediction only ","50S ribosome-binding GTPase;; Ferrous iron transport protein B","DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DGP3 PE=2 SV=1","S","Function unknown","hypothetical protein B456_007G137000 [Gossypium raimondii]"]
["c23810.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111311329 [Durio zibethinus]"]
["c18409.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Membrane bound O-acyl transferase family","Probable long-chain-alcohol O-fatty-acyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=AT5 PE=2 SV=1","S","Function unknown","probable long-chain-alcohol O-fatty-acyltransferase 5 [Durio zibethinus]"]
["c38804.graph_c0","--","--","--","--","--","--","--","Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1","S","Function unknown","PREDICTED: protein POLYCHOME [Theobroma cacao] "]
["c42326.graph_c0","--","--","Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: integral component of membrane (GO:0016021);; ","K20721|1.77553e-108|gra:105765496|K20721 reticulon-1 | (RefSeq) reticulon-like protein B2","[U]","Intracellular trafficking, secretion, and vesicular transport ","Reticulon","Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein GOBAR_AA11278 [Gossypium barbadense]"]
["c77597.graph_c0","--","--","--","--","--","--","--","--","T","Signal transduction mechanisms","--"]
["c85266.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein AQUCO_02600399v1 [Aquilegia coerulea]"]
["c24540.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_045038 [Theobroma cacao]"]
["c82612.graph_c0","--","--","Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Plastocyanin-like domain","Umecyanin OS=Armoracia rusticana OX=3704 PE=1 SV=1","S","Function unknown","umecyanin-like [Carica papaya]"]
["c91173.graph_c0","--","--","--","--","[S]","Function unknown ","Protein of unknown function (DUF1241)","--","S","Function unknown","--"]
["c29886.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: chloroplast (GO:0009507);; ","K03665|0|gra:105770164|K03665 GTPase | (RefSeq) putative GTP-binding protein 6","[R]","General function prediction only ","GTP-binding GTPase N-terminal;; GTP-binding GTPase Middle Region;; 50S ribosome-binding GTPase;; RsgA GTPase;; Dynamin family;; Ferrous iron transport protein B;; CobW/HypB/UreG, nucleotide-binding domain","GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g49725 PE=2 SV=2","S","Function unknown","PREDICTED: GTPase HflX-like [Gossypium hirsutum]"]
["c42159.graph_c0","--","--","--","K19042|3.12314e-81|tcc:TCM_006620|K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] | (RefSeq) SBP family protein, putative","[O]","Posttranslational modification, protein turnover, chaperones ","--","BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG1 PE=1 SV=1","S","Function unknown","probable BOI-related E3 ubiquitin-protein ligase 3 [Durio zibethinus]"]
["c23929.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF688)","--","S","Function unknown","hypothetical protein CCACVL1_09382 [Corchorus capsularis]"]
["c48727.graph_c0","--","--","Cellular Component: cilium (GO:0005929);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: phosphatidylinositol binding (GO:0035091);; Biological Process: protein localization to cilium (GO:0061512);; ","--","[R]","General function prediction only ","Tub family;; F-box domain;; F-box-like;; Tub family","Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP8 PE=2 SV=1","S","Function unknown","PREDICTED: tubby-like F-box protein 8 [Gossypium raimondii] "]
["c15994.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Ankyrin repeats (many copies);; Ankyrin repeat;; Ankyrin repeats (3 copies)","--","--","--","uncharacterized protein LOC111275235 [Durio zibethinus]"]
["c77819.graph_c0","--","--","Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxidation-reduction process (GO:0055114);; ","K09840|1.23736e-49|tcc:TCM_029468|K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] | (RefSeq) Nine-cis-epoxycarotenoid dioxygenase 5","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Retinal pigment epithelial membrane protein","Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NCED5 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Gossypium hirsutum]"]
["c72378.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","G","Carbohydrate transport and metabolism","aquaporin-like protein [Naematelia encephala]"]
["c35006.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: chloroplast (GO:0009507);; ","K09486|3.87378e-37|gra:105773042|K09486 hypoxia up-regulated 1 | (RefSeq) heat shock 70 kDa protein 17-like","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp70 protein","Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana OX=3702 GN=HSP70-17 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA36478 [Gossypium barbadense]"]
["c33346.graph_c1","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: ATP hydrolysis coupled proton transport (GO:0015991);; Cellular Component: proton-transporting V-type ATPase, V1 domain (GO:0033180);; Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961);; ","K02151|6.11743e-14|gra:105781242|K02151 V-type H+-transporting ATPase subunit F | (RefSeq) V-type proton ATPase subunit F-like","[C]","Energy production and conversion ","--","V-type proton ATPase subunit F OS=Arabidopsis thaliana OX=3702 GN=VHA-F PE=2 SV=1","C","Energy production and conversion","PREDICTED: V-type proton ATPase subunit F-like [Gossypium arboreum]"]
["c86064.graph_c0","--","--","Biological Process: mitotic cytokinesis (GO:0000281);; Molecular Function: actin binding (GO:0003779);; Cellular Component: actin cytoskeleton (GO:0015629);; Biological Process: negative regulation of actin filament depolymerization (GO:0030835);; Cellular Component: cytoskeletal part (GO:0044430);; Cellular Component: cytoplasmic part (GO:0044444);; ","K10365|5.74806e-32|ppp:PHYPADRAFT_108319|K10365 capping protein (actin filament) muscle Z-line, beta | (RefSeq) hypothetical protein","[Z]","Cytoskeleton ","F-actin capping protein, beta subunit","Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g71790 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","F-actin-capping protein subunit beta isoforms 1 and 2 [Mortierella verticillata NRRL 6337]"]
["c76141.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Dirigent-like protein","Dirigent protein 5 OS=Arabidopsis thaliana OX=3702 GN=DIR5 PE=2 SV=1","S","Function unknown","hypothetical protein B456_008G251200 [Gossypium raimondii]"]
["c38648.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K06892|0|gra:105781174|K06892 feruloyl-CoA ortho-hydroxylase [EC:1.14.11.-] | (RefSeq) feruloyl CoA ortho-hydroxylase 1-like","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana OX=3702 GN=F6&apos;H1 PE=1 SV=1","S","Function unknown","PREDICTED: feruloyl CoA ortho-hydroxylase 1-like [Gossypium raimondii] "]
["c49124.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Alpha/beta-Hydrolases superfamily protein [Theobroma cacao]"]
["c44872.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Zein-binding","Probable myosin-binding protein 6 OS=Arabidopsis thaliana OX=3702 GN=MYOB6 PE=2 SV=1","S","Function unknown","PREDICTED: probable myosin-binding protein 5 [Gossypium hirsutum]"]
["c42330.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111285328 isoform X2 [Durio zibethinus]"]
["c60367.graph_c0","--","--","Molecular Function: lanosterol synthase activity (GO:0000250);; ","K01853|6.72981e-41|gra:105781103|K01853 cycloartenol synthase [EC:5.4.99.8] | (RefSeq) cycloartenol synthase 2-like","[I]","Lipid transport and metabolism ","--","Parkeol synthase OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0189600 PE=1 SV=1","S","Function unknown","hypothetical protein B456_013G241900 [Gossypium raimondii]"]
["c83363.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00485|9.24099e-10|cic:CICLE_v10008046mg|K00485 dimethylaniline monooxygenase (N-oxide forming) [EC:1.14.13.8] | (RefSeq) hypothetical protein","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=FMO1 PE=2 SV=1","P","Inorganic ion transport and metabolism","Flavin monooxygenase-like protein [Corchorus olitorius]"]
["c49121.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: viral nucleocapsid (GO:0019013);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","K12741|0|gra:105768843|K12741 heterogeneous nuclear ribonucleoprotein A1/A3 | (RefSeq) UBP1-associated protein 2A-like","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);; RNA recognition motif","UBP1-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=UBA2A PE=1 SV=1","S","Function unknown","PREDICTED: UBP1-associated protein 2B-like [Gossypium hirsutum] "]
["c37316.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","uncharacterized protein LOC110643971, partial [Hevea brasiliensis]"]
["c20356.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|7.38647e-17|gra:105799818|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) protein NRT1/ PTR FAMILY 5.6","[E]","Amino acid transport and metabolism ","--","Protein NRT1/ PTR FAMILY 5.6 OS=Arabidopsis thaliana OX=3702 GN=NPF5.6 PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein F383_15518 [Gossypium arboreum]"]
["c42434.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: vacuolar transport (GO:0007034);; Cellular Component: integral component of membrane (GO:0016021);; ","K12193|1.61419e-40|bna:106407520|K12193 charged multivesicular body protein 3 | (RefSeq) vacuolar protein sorting-associated protein 24 homolog 1-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Snf7","Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS24-1 PE=1 SV=1","N","Cell motility","hypothetical protein B456_012G006500 [Gossypium raimondii]"]
["c30237.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","K13692|2.64303e-19|tcc:TCM_000702|K13692 UDP-glucose:(indol-3-yl)acetate beta-D-glucosyltransferase [EC:2.4.1.121] | (RefSeq) UDP-glucosyl transferase 84B2, putative","[GC]","--","--","UDP-glycosyltransferase 84B2 OS=Arabidopsis thaliana OX=3702 GN=UGT84B2 PE=3 SV=1","S","Function unknown","UDP-glucuronosyl/UDP-glucosyltransferase [Corchorus olitorius]"]
["c91361.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","Aldo/keto reductase family","Aldo-keto reductase family 4 member C8 OS=Arabidopsis thaliana OX=3702 GN=AKR4C8 PE=1 SV=2","S","Function unknown","hypothetical protein SNOG_14959 [Parastagonospora nodorum SN15] "]
["c47845.graph_c1","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: calmodulin-dependent protein kinase activity (GO:0004683);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Molecular Function: calcium-dependent protein serine/threonine kinase activity (GO:0009931);; Biological Process: peptidyl-serine phosphorylation (GO:0018105);; Biological Process: intracellular signal transduction (GO:0035556);; Biological Process: protein autophosphorylation (GO:0046777);; ","K13412|0|tcc:TCM_024724|K13412 calcium-dependent protein kinase [EC:2.7.11.1] | (RefSeq) Calcium-dependent protein kinase 19","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; EF-hand domain pair;; EF hand;; EF-hand domain;; EF-hand domain pair;; EF hand;; Kinase-like;; Lipopolysaccharide kinase (Kdo/WaaP) family;; Cytoskeletal-regulatory complex EF hand;; Chlorophyll A-B binding protein;; DNA polymerases epsilon N terminal;; Chlorophyll A-B binding protein","Calcium-dependent protein kinase 32 OS=Arabidopsis thaliana OX=3702 GN=CPK32 PE=1 SV=1","T","Signal transduction mechanisms","calcium-dependent protein kinase 32-like [Gossypium hirsutum] "]
["c47389.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc finger, C3HC4 type (RING finger)","E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: RING finger protein 10-like isoform X2 [Gossypium hirsutum]"]
["c49306.graph_c1","[P]","Inorganic ion transport and metabolism ","--","K01535|1.25925e-128|gra:105765079|K01535 H+-transporting ATPase [EC:3.6.3.6] | (RefSeq) ATPase 11, plasma membrane-type-like","[P]","Inorganic ion transport and metabolism ","--","ATPase 7, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=AHA7 PE=3 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein B456_008G232800 [Gossypium raimondii]"]
["c45911.graph_c3","--","--","--","--","--","--","--","Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana OX=3702 GN=MED16 PE=1 SV=1","--","--","mediator of RNA polymerase II transcription subunit 16 [Cucurbita maxima]"]
["c41656.graph_c0","--","--","--","--","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);; Ataxin-2 C-terminal region","Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana OX=3702 GN=CID11 PE=2 SV=1","S","Function unknown","hypothetical protein CCACVL1_05587 [Corchorus capsularis]"]
["c35790.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: pectate lyase activity (GO:0030570);; Biological Process: pectin catabolic process (GO:0045490);; Molecular Function: metal ion binding (GO:0046872);; ","K01728|6.38749e-158|gra:105785842|K01728 pectate lyase [EC:4.2.2.2] | (RefSeq) probable pectate lyase 5","--","--","Pectate lyase;; Right handed beta helix region","Probable pectate lyase 5 OS=Arabidopsis thaliana OX=3702 GN=At1g67750 PE=2 SV=2","G","Carbohydrate transport and metabolism","probable pectate lyase 5 [Durio zibethinus]"]
["c82328.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: Cul4-RING E3 ubiquitin ligase complex (GO:0080008);; ","K10610|8.20356e-37|gmx:106799530|K10610 DNA damage-binding protein 1 | (RefSeq) DNA damage-binding protein 1a-like","[L]","Replication, recombination and repair ","CPSF A subunit region","DNA damage-binding protein 1a OS=Arabidopsis thaliana OX=3702 GN=DDB1A PE=1 SV=1","L","Replication, recombination and repair","hypothetical protein GLYMA_08G129900 [Glycine max]"]
["c56513.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","--","--","--","--","Damaged dna-binding 2, putative isoform 1 [Theobroma cacao] "]
["c32966.graph_c0","[U]","Intracellular trafficking, secretion, and vesicular transport ","Biological Process: protein transport (GO:0015031);; Cellular Component: integral component of membrane (GO:0016021);; ","K10956|0|gra:105776981|K10956 protein transport protein SEC61 subunit alpha | (RefSeq) protein transport protein Sec61 subunit alpha-like","[UO]","--","SecY translocase;; SecY translocase","Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina OX=3034 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","protein transport protein Sec61 subunit alpha-like isoform X2 [Durio zibethinus]"]
["c51157.graph_c0","--","--","Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","--","--","--","Transferase family","Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana OX=3702 GN=At3g50280 PE=3 SV=1","S","Function unknown","uncharacterized acetyltransferase At3g50280-like [Durio zibethinus]"]
["c44617.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: protein ABHD11 isoform X3 [Gossypium arboreum]"]
["c18299.graph_c0","[R]","General function prediction only ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","K04392|2.79284e-38|aip:107631182|K04392 Ras-related C3 botulinum toxin substrate 1 | (RefSeq) rac-like GTP-binding protein RAC13","[R]","General function prediction only ","Ras family;; Ras of Complex, Roc, domain of DAPkinase","Rac-like GTP-binding protein RAC1 OS=Lotus japonicus OX=34305 GN=RAC1 PE=2 SV=1","S","Function unknown","GTP-binding protein rho1 precursor [Protomyces lactucaedebilis]"]
["c62367.graph_c0","--","--","Molecular Function: kinase activity (GO:0016301);; ","--","[T]","Signal transduction mechanisms ","--","SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana OX=3702 GN=KIN10 PE=1 SV=2","T","Signal transduction mechanisms","unknown [Lotus japonicus]"]
["c42707.graph_c0","--","--","--","--","--","--","Hydrophobic seed protein","--","--","--","PREDICTED: putative lipid-binding protein AIR1 [Gossypium raimondii] "]
["c7133.graph_c0","[C]","Energy production and conversion ","Biological Process: cytokinin metabolic process (GO:0009690);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: cytokinin dehydrogenase activity (GO:0019139);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00279|1.70286e-46|gra:105780879|K00279 cytokinin dehydrogenase [EC:1.5.99.12] | (RefSeq) cytokinin dehydrogenase 6-like","[C]","Energy production and conversion ","FAD binding domain","Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana OX=3702 GN=CKX6 PE=2 SV=2","C","Energy production and conversion","PREDICTED: cytokinin dehydrogenase 6-like [Gossypium hirsutum] "]
["c39190.graph_c1","--","--","Molecular Function: 1-phosphatidylinositol binding (GO:0005545);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: clathrin-coated vesicle (GO:0030136);; Molecular Function: clathrin binding (GO:0030276);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: clathrin coat assembly (GO:0048268);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[TU]","--","ANTH domain","Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana OX=3702 GN=At5g35200 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: putative clathrin assembly protein At5g35200 [Gossypium hirsutum]"]
["c45734.graph_c0","[L]","Replication, recombination and repair ","--","--","[R]","General function prediction only ","HhH-GPD superfamily base excision DNA repair protein;; Zinc finger, C2H2 type;; C2H2-type zinc finger","Transcription factor IIIA OS=Arabidopsis thaliana OX=3702 GN=TFIIIA PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105767847 isoform X2 [Gossypium raimondii] "]
["c64452.graph_c0","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: lyase activity (GO:0016829);; Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509);; Molecular Function: acireductone synthase activity (GO:0043874);; ","K16054|6.48989e-16|vra:106755004|K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] | (RefSeq) probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1","[E]","Amino acid transport and metabolism ","--","Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 OS=Vitis vinifera OX=29760 GN=VIT_19s0014g02480 PE=3 SV=2","C","Energy production and conversion","hypothetical protein B456_013G170700 [Gossypium raimondii]"]
["c40270.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14486|3.20955e-48|gra:105797241|K14486 auxin response factor | (RefSeq) auxin response factor 7","--","--","B3 DNA binding domain","Auxin response factor 19 OS=Arabidopsis thaliana OX=3702 GN=ARF19 PE=1 SV=2","K","Transcription","hypothetical protein B456_001G017000 [Gossypium raimondii]"]
["c7551.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111285731 [Durio zibethinus] "]
["c48169.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107958656 [Gossypium hirsutum]"]
["c89975.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: methionine adenosyltransferase activity (GO:0004478);; Molecular Function: copper ion binding (GO:0005507);; Molecular Function: protein binding (GO:0005515);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556);; Biological Process: one-carbon metabolic process (GO:0006730);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: pollen tube growth (GO:0009860);; ","K00789|2.85035e-54|bna:106451494|K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] | (RefSeq) S-adenosylmethionine synthase 3-like","[H]","Coenzyme transport and metabolism ","S-adenosylmethionine synthetase, C-terminal domain","S-adenosylmethionine synthase 3 OS=Arabidopsis thaliana OX=3702 GN=METK3 PE=1 SV=1","H","Coenzyme transport and metabolism","PREDICTED: S-adenosylmethionine synthase 3 [Raphanus sativus]"]
["c81444.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","[R]","General function prediction only ","--","Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Gossypium hirsutum]"]
["c49854.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","K13525|0|gra:105785510|K13525 transitional endoplasmic reticulum ATPase | (RefSeq) cell division cycle protein 48 homolog","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA);; Holliday junction DNA helicase ruvB N-terminus;; AAA ATPase domain;; AAA domain (Cdc48 subfamily);; Cell division protein 48 (CDC48), domain 2;; AAA domain (dynein-related subfamily);; Cell division protein 48 (CDC48), N-terminal domain;; AAA domain;; AAA domain;; AAA domain;; TIP49 C-terminus;; AAA domain;; RNA helicase;; Magnesium chelatase, subunit ChlI;; IstB-like ATP binding protein;; ABC transporter;; Viral (Superfamily 1) RNA helicase;; Parvovirus non-structural protein NS1;; Vps4 C terminal oligomerisation domain;; Zeta toxin;; Sigma-54 interaction domain;; Bacterial dnaA  protein","Cell division cycle protein 48 homolog OS=Glycine max OX=3847 GN=CDC48 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: cell division cycle protein 48 homolog [Gossypium hirsutum]"]
["c25427.graph_c0","--","--","Biological Process: developmental process involved in reproduction (GO:0003006);; Biological Process: multicellular organism development (GO:0007275);; Biological Process: single organism reproductive process (GO:0044702);; ","--","--","--","--","--","--","--","Transcription factor, SBP-box [Corchorus olitorius]"]
["c72758.graph_c0","--","--","--","--","[W]","Extracellular structures ","von Willebrand factor type A domain","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c3183.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","--"]
["c39911.graph_c0","--","--","Molecular Function: actin binding (GO:0003779);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: actin filament (GO:0005884);; Biological Process: actin filament depolymerization (GO:0030042);; ","K05765|6.22288e-51|gra:105765539|K05765 cofilin | (RefSeq) actin-depolymerizing factor 7-like","[Z]","Cytoskeleton ","Cofilin/tropomyosin-type actin-binding protein","Actin-depolymerizing factor 7 OS=Arabidopsis thaliana OX=3702 GN=ADF7 PE=2 SV=1","S","Function unknown","actin-depolymerizing factor 7-like [Helianthus annuus] "]
["c46186.graph_c1","--","--","Cellular Component: spindle microtubule (GO:0005876);; Cellular Component: phragmoplast (GO:0009524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: microtubule minus-end binding (GO:0051011);; ","--","--","--","Plant nuclear matrix protein 1 (NMP1);; Plant nuclear matrix protein 1 (NMP1)","AUGMIN subunit 7 OS=Arabidopsis thaliana OX=3702 GN=AUG7 PE=1 SV=1","S","Function unknown","hypothetical protein B456_004G254100 [Gossypium raimondii]"]
["c34988.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","Membrane lipoprotein [Theobroma cacao]"]
["c43505.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cell wall (GO:0005618);; Biological Process: xyloglucan metabolic process (GO:0010411);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall biogenesis (GO:0042546);; Cellular Component: apoplast (GO:0048046);; Biological Process: cell wall organization (GO:0071555);; ","K08235|2.62034e-88|gra:105794939|K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] | (RefSeq) xyloglucan endotransglucosylase/hydrolase protein 9-like","--","--","Xyloglucan endo-transglycosylase (XET) C-terminus;; Glycosyl hydrolases family 16;; Glycosyl hydrolases family 16;; Glycosyl hydrolases family 16","Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana OX=3702 GN=XTH9 PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein B456_005G208300 [Gossypium raimondii]"]
["c38679.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: trichome branching (GO:0010091);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ligase activity (GO:0016874);; Biological Process: DNA endoreduplication (GO:0042023);; ","K10590|3.40868e-41|gra:105785909|K10590 E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] | (RefSeq) E3 ubiquitin-protein ligase UPL3-like","[O]","Posttranslational modification, protein turnover, chaperones ","HECT-domain (ubiquitin-transferase)","E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","HEAT repeat,HECT-domain isoform 8 [Theobroma cacao]"]
["c84827.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: endopeptidase activity (GO:0004175);; Biological Process: proteolysis (GO:0006508);; Molecular Function: serine-type peptidase activity (GO:0008236);; Biological Process: protein maturation (GO:0051604);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Subtilase family","--","O","Posttranslational modification, protein turnover, chaperones","pheromone processing endoprotease [Melampsora larici-populina 98AG31] "]
["c34097.graph_c0","[C]","Energy production and conversion ","Molecular Function: oxygen transporter activity (GO:0005344);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: fatty acid metabolic process (GO:0006631);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: oxygen transport (GO:0015671);; Biological Process: triglyceride biosynthetic process (GO:0019432);; Molecular Function: oxygen binding (GO:0019825);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; ","--","[C]","Energy production and conversion ","Globin","Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum OX=3635 GN=HB2 PE=3 SV=1","C","Energy production and conversion","PREDICTED: non-symbiotic hemoglobin 2 [Gossypium arboreum] "]
["c44817.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: embryo sac development (GO:0009553);; Biological Process: double fertilization forming a zygote and endosperm (GO:0009567);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Molecular Function: isomerase activity (GO:0016853);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: pollen tube development (GO:0048868);; ","K09584|0|gra:105791452|K09584 protein disulfide-isomerase A6 [EC:5.3.4.1] | (RefSeq) protein disulfide-isomerase like 2-1-like","[O]","Posttranslational modification, protein turnover, chaperones ","Thioredoxin;; Endoplasmic reticulum protein ERp29, C-terminal domain;; OST3 / OST6 family, transporter family;; Thioredoxin-like domain;; AhpC/TSA family;; Thioredoxin-like;; Thioredoxin-like;; Thioredoxin-like domain","Protein disulfide-isomerase like 2-1 OS=Arabidopsis thaliana OX=3702 GN=PDIL2-1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: protein disulfide-isomerase like 2-1-like [Gossypium hirsutum]"]
["c90200.graph_c0","[EG]","Amino acid transport and metabolism ;; Carbohydrate transport and metabolism ","Biological Process: branched-chain amino acid biosynthetic process (GO:0009082);; Molecular Function: lyase activity (GO:0016829);; ","--","--","--","--","--","--","--","Dihydroxy-acid dehydratase [Beauveria bassiana D1-5]"]
["c38616.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH126 OS=Arabidopsis thaliana OX=3702 GN=BHLH126 PE=2 SV=1","K","Transcription","transcription factor bHLH126-like [Durio zibethinus]"]
["c89899.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein SMAC_09952 [Sordaria macrospora k-hell] "]
["c15916.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal large subunit assembly (GO:0000027);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; Biological Process: assembly of large subunit precursor of preribosome (GO:1902626);; ","K02896|9.19272e-16|cme:CYME_CMI205C|K02896 large subunit ribosomal protein L24e | (RefSeq) 60S ribosomal protein L24","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L24e","60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","60S ribosomal protein L24, putative [Pythium insidiosum]"]
["c26389.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","--","C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana OX=3702 GN=NTMC2T6.1 PE=1 SV=2","S","Function unknown","PREDICTED: C2 domain-containing protein At1g53590-like [Gossypium hirsutum]"]
["c40649.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Molecular Function: transferase activity (GO:0016740);; ","K12581|6.14477e-147|tcc:TCM_022844|K12581 CCR4-NOT transcription complex subunit 7/8 | (RefSeq) Polynucleotidyl transferase","[A]","RNA processing and modification ","CAF1 family ribonuclease","Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1","K","Transcription","probable CCR4-associated factor 1 homolog 11 [Durio zibethinus]"]
["c76202.graph_c0","--","--","--","--","--","--","IQ calmodulin-binding motif","--","--","--","--"]
["c40465.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","K11583|9.81284e-100|gra:105782511|K11583 serine/threonine-protein phosphatase 2A regulatory subunit B'' | (RefSeq) probable serine/threonine protein phosphatase 2A regulatory subunit B''delta","[A]","RNA processing and modification ","--","Probable serine/threonine protein phosphatase 2A regulatory subunit B&apos;&apos;delta OS=Arabidopsis thaliana OX=3702 GN=B&apos;&apos;DELTA PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein B456_013G187900 [Gossypium raimondii]"]
["c51806.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111290881 [Durio zibethinus]"]
["c86513.graph_c0","--","--","--","--","--","--","Phosphate-induced protein 1 conserved region","Protein EXORDIUM-like 5 OS=Arabidopsis thaliana OX=3702 GN=EXL5 PE=2 SV=1","S","Function unknown","Phosphate-induced protein 1 [Macleaya cordata]"]
["c29080.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor bHLH62 OS=Arabidopsis thaliana OX=3702 GN=BHLH62 PE=2 SV=1","K","Transcription","transcription factor bHLH78-like [Herrania umbratica]"]
["c8904.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Got1/Sft2-like family","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: protein transport protein SFT2 isoform X1 [Gossypium arboreum]"]
["c48498.graph_c0","--","--","Molecular Function: translation elongation factor activity (GO:0003746);; Biological Process: translational elongation (GO:0006414);; ","--","--","--","--","--","S","Function unknown","Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao]"]
["c45474.graph_c1","[C]","Energy production and conversion ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: plastoglobule (GO:0010287);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K17872|0|gra:105762580|K17872 NADH:ubiquinone reductase (non-electrogenic) [EC:1.6.5.9] | (RefSeq) alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial","--","--","Pyridine nucleotide-disulphide oxidoreductase","Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NDC1 PE=1 SV=2","C","Energy production and conversion","PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial [Gossypium raimondii] "]
["c11048.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","K19040|1.81372e-74|gra:105800180|K19040 E3 ubiquitin-protein ligase ATL10/75/76/77/78 [EC:2.3.2.27] | (RefSeq) RING-H2 finger protein ATL79-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-like zinc finger;; Zinc finger, C3HC4 type (RING finger);; RING-H2 zinc finger domain;; Zinc finger, C3HC4 type (RING finger);; Anaphase-promoting complex subunit 11 RING-H2 finger","RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: RING-H2 finger protein ATL79-like [Gossypium arboreum]"]
["c92097.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","alpha/beta-hydrolase [Stagonospora sp. SRC1lsM3a]"]
["c16184.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: plastid lipid-associated protein 3, chloroplastic-like isoform X2 [Gossypium hirsutum]"]
["c20327.graph_c0","[C]","Energy production and conversion ","Molecular Function: glycerol kinase activity (GO:0004370);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Biological Process: triglyceride metabolic process (GO:0006641);; Biological Process: phosphorylation (GO:0016310);; Biological Process: glycerol catabolic process (GO:0019563);; Biological Process: defense response to bacterium (GO:0042742);; Biological Process: glycerol-3-phosphate biosynthetic process (GO:0046167);; ","--","[G]","Carbohydrate transport and metabolism ","FGGY family of carbohydrate kinases, C-terminal domain","Glycerol kinase OS=Arabidopsis thaliana OX=3702 GN=GLPK PE=1 SV=1","C","Energy production and conversion","glycerol kinase [Durio zibethinus]"]
["c2945.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: acetate-CoA ligase activity (GO:0003987);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: AMP binding (GO:0016208);; Biological Process: acetyl-CoA biosynthetic process from acetate (GO:0019427);; ","K01895|7.01543e-32|ppp:PHYPADRAFT_56608|K01895 acetyl-CoA synthetase [EC:6.2.1.1] | (RefSeq) hypothetical protein","[I]","Lipid transport and metabolism ","AMP-binding enzyme","Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal OS=Arabidopsis thaliana OX=3702 GN=ACS PE=1 SV=1","I","Lipid transport and metabolism","acetate--ligase [Ceraceosorus bombacis]"]
["c75767.graph_c0","--","--","Biological Process: potassium ion transport (GO:0006813);; Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);; Cellular Component: membrane (GO:0016020);; ","K03549|3.91222e-19|nnu:104599659|K03549 KUP system potassium uptake protein | (RefSeq) potassium transporter 10-like","--","--","--","Probable potassium transporter 11 OS=Oryza sativa subsp. japonica OX=39947 GN=HAK11 PE=2 SV=4","P","Inorganic ion transport and metabolism","potassium transporter 11-like isoform X2 [Durio zibethinus] "]
["c3376.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Molecular Function: protein xylosyltransferase activity (GO:0030158);; Molecular Function: protein-disulfide reductase activity (GO:0047134);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[S]","Function unknown ","Eukaryotic protein of unknown function (DUF953)","Thioredoxin-like protein Clot OS=Arabidopsis thaliana OX=3702 GN=At5g42850 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: thioredoxin-like protein Clot [Fragaria vesca subsp. vesca]"]
["c49835.graph_c0","[S]","Function unknown ","--","K11647|0|tcc:TCM_005306|K11647 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] | (RefSeq) Chromatin remodeling complex subunit","[BK]","--","SNF2 family N-terminal domain;; Helicase conserved C-terminal domain;; QLQ;; Type III restriction enzyme, res subunit;; DEAD/DEAH box helicase","ATP-dependent helicase BRM OS=Arabidopsis thaliana OX=3702 GN=BRM PE=1 SV=1","L","Replication, recombination and repair","PREDICTED: ATP-dependent helicase BRM [Theobroma cacao]"]
["c37274.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111307715 isoform X2 [Durio zibethinus]"]
["c39418.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Epidermal patterning factor proteins","EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1","S","Function unknown","EPIDERMAL PATTERNING FACTOR-like protein 2 [Durio zibethinus]"]
["c70792.graph_c0","--","--","--","--","[C]","Energy production and conversion ","NADH:ubiquinone oxidoreductase, NDUFS5-15kDa","--","C","Energy production and conversion","--"]
["c93950.graph_c0","--","--","--","--","[R]","General function prediction only ","4F5 protein family","--","S","Function unknown","small edrk-rich factor 2 [Coemansia reversa NRRL 1564]"]
["c26870.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: actin filament (GO:0005884);; Cellular Component: F-actin capping protein complex (GO:0008290);; Biological Process: filamentous growth (GO:0030447);; Cellular Component: actin cortical patch (GO:0030479);; Cellular Component: cell division site (GO:0032153);; Cellular Component: mating projection tip (GO:0043332);; Molecular Function: actin filament binding (GO:0051015);; Biological Process: barbed-end actin filament capping (GO:0051016);; Cellular Component: cell tip (GO:0051286);; Biological Process: mitotic actomyosin contractile ring contraction (GO:1902404);; ","K10365|4.15919e-51|smo:SELMODRAFT_106718|K10365 capping protein (actin filament) muscle Z-line, beta | (RefSeq) hypothetical protein","[Z]","Cytoskeleton ","F-actin capping protein, beta subunit","Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g71790 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","F-actin capping protein, beta subunit [Gonapodya prolifera JEL478]"]
["c34321.graph_c1","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: signal transduction (GO:0007165);; Biological Process: phosphorylation (GO:0016310);; Biological Process: system development (GO:0048731);; Biological Process: cellular response to organic substance (GO:0071310);; Biological Process: cellular response to oxygen-containing compound (GO:1901701);; ","K07198|3.00677e-76|gra:105766471|K07198 5'-AMP-activated protein kinase, catalytic alpha subunit [EC:2.7.11.11] | (RefSeq) SNF1-related protein kinase catalytic subunit alpha KIN10-like","[T]","Signal transduction mechanisms ","Kinase associated domain 1","SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana OX=3702 GN=KIN10 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10-like [Gossypium hirsutum]"]
["c43833.graph_c2","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1","L","Replication, recombination and repair","uncharacterized protein LOC111830088 [Capsella rubella]"]
["c8232.graph_c0","--","--","Cellular Component: Sec61 translocon complex (GO:0005784);; Biological Process: intracellular protein transport (GO:0006886);; Molecular Function: protein transporter activity (GO:0008565);; Cellular Component: integral component of membrane (GO:0016021);; ","K09481|8.11552e-22|csv:101220008|K09481 protein transport protein SEC61 subunit beta | (RefSeq) protein transport protein Sec61 subunit beta","[O]","Posttranslational modification, protein turnover, chaperones ","Sec61beta family","Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus] "]
["c56318.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1","--","--","PREDICTED: putative receptor-like protein kinase At3g47110 [Gossypium hirsutum]"]
["c84259.graph_c0","--","--","Biological Process: biosynthetic process (GO:0009058);; Molecular Function: transferase activity (GO:0016740);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","--","[T]","Signal transduction mechanisms ","--","1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana OX=3702 GN=ACS11 PE=1 SV=1","E","Amino acid transport and metabolism","PLP-dependent transferase [Cutaneotrichosporon oleaginosum] "]
["c50067.graph_c0","--","--","--","--","--","--","PLAT/LH2 domain;; Embryo-specific protein 3, (ATS3)","PLAT domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PLAT1 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD20975 [Gossypium barbadense]"]
["c2799.graph_c0","--","--","--","K01681|6.37914e-09|tcc:TCM_011347|K01681 aconitate hydratase [EC:4.2.1.3] | (RefSeq) Aconitase 3","[AJ]","--","--","Aconitate hydratase 1 OS=Arabidopsis thaliana OX=3702 GN=ACO1 PE=1 SV=2","C","Energy production and conversion","hypothetical protein GOBAR_DD06992 [Gossypium barbadense]"]
["c21902.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","K04097|9.65051e-13|cre:CHLREDRAFT_193661|K04097 prostaglandin-H2 D-isomerase / glutathione transferase [EC:5.3.99.2 2.5.1.18] | (RefSeq) GSTS1; glutathione-S-transferase","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, N-terminal domain","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein PPTG_02740 [Phytophthora parasitica INRA-310] "]
["c89044.graph_c0","--","--","--","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c79189.graph_c0","[S]","Function unknown ","--","--","[S]","Function unknown ","Transport and Golgi organisation 2","--","S","Function unknown","hypothetical protein CICLE_v10002169mg [Citrus clementina]"]
["c47232.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; TPR repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat","Protein NPGR2 OS=Arabidopsis thaliana OX=3702 GN=NPGR2 PE=1 SV=1","S","Function unknown","protein NPGR2-like isoform X1 [Durio zibethinus]"]
["c40682.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: adenylate kinase activity (GO:0004017);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: nucleotide phosphorylation (GO:0046939);; Biological Process: developmental vegetative growth (GO:0080186);; ","K18532|1.96055e-63|tcc:TCM_002855|K18532 adenylate kinase [EC:2.7.4.3] | (RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein","[F]","Nucleotide transport and metabolism ","AAA domain;; AAA domain;; AAA domain;; ATPase family associated with various cellular activities (AAA)","Adenylate kinase isoenzyme 6 homolog OS=Arabidopsis thaliana OX=3702 GN=AAK6 PE=1 SV=1","F","Nucleotide transport and metabolism","adenylate kinase isoenzyme 6 homolog [Durio zibethinus]"]
["c28257.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K03083|1.83718e-48|bdi:100827982|K03083 glycogen synthase kinase 3 beta [EC:2.7.11.26] | (RefSeq) shaggy-related protein kinase alpha-like","[G]","Carbohydrate transport and metabolism ","Protein kinase domain","Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana OX=3702 GN=ASK5 PE=1 SV=1","T","Signal transduction mechanisms","unnamed protein product [Oryza sativa Japonica Group]"]
["c76056.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleolus (GO:0005730);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Molecular Function: small ribosomal subunit rRNA binding (GO:0070181);; ","K02953|1.24898e-38|obr:102720451|K02953 small subunit ribosomal protein S13e | (RefSeq) 40S ribosomal protein S13-2-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S15","40S ribosomal protein S13 OS=Zea mays OX=4577 GN=RPS13 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S13 [Ramularia collo-cygni] "]
["c78661.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","TOM7 family","--","U","Intracellular trafficking, secretion, and vesicular transport","TOM7 family-domain-containing protein [Microdochium bolleyi]"]
["c63825.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","--","L","Replication, recombination and repair","hypothetical protein L484_018038 [Morus notabilis]"]
["c45121.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","--","S","Function unknown","uncharacterized protein LOC112094217 [Morus notabilis]"]
["c52352.graph_c0","--","--","Cellular Component: monolayer-surrounded lipid storage body (GO:0012511);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: lipid storage (GO:0019915);; ","--","--","--","Oleosin","Oleosin 16 kDa OS=Bromus secalinus OX=4502 GN=OLE16 PE=2 SV=1","S","Function unknown","oleosin 1-like [Durio zibethinus]"]
["c27229.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c49258.graph_c0","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10398|0|gra:105767837|K10398 kinesin family member 11 | (RefSeq) 125 kDa kinesin-related protein-like","[Z]","Cytoskeleton ","Kinesin motor domain;; Microtubule binding","Kinesin-like protein KIN-5D OS=Arabidopsis thaliana OX=3702 GN=KIN5D PE=3 SV=1","Z","Cytoskeleton","hypothetical protein B456_009G103300 [Gossypium raimondii]"]
["c87050.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Biological Process: response to mechanical stimulus (GO:0009612);; Biological Process: response to low light intensity stimulus (GO:0009645);; Biological Process: response to auxin (GO:0009733);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: membrane (GO:0016020);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall biogenesis (GO:0042546);; Cellular Component: apoplast (GO:0048046);; Biological Process: cell wall organization (GO:0071555);; ","K08235|2.08752e-36|ath:AT2G06850|K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] | (RefSeq) XTH4; xyloglucan endotransglucosylase/hydrolase 4","--","--","--","Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana OX=3702 GN=XTH4 PE=1 SV=1","G","Carbohydrate transport and metabolism","putative endoxyloglucan glycosyltransferase [Arabidopsis thaliana]"]
["c26509.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","K19039|1.63434e-62|gra:105792757|K19039 E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] | (RefSeq) RING-H2 zinc finger protein RHA4a","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-H2 zinc finger domain;; RING-like zinc finger;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger)","Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: RING-H2 zinc finger protein RHA4a-like isoform X2 [Gossypium hirsutum]"]
["c79853.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; ","K04733|7.37271e-40|gra:105796435|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) wall-associated receptor kinase-like 3","--","--","--","--","--","--","wall-associated receptor kinase-like 5 [Durio zibethinus]"]
["c68948.graph_c0","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","K12126|3.0453e-17|cic:CICLE_v10019786mg|K12126 phytochrome-interacting factor 3 | (RefSeq) hypothetical protein","--","--","Helix-loop-helix DNA-binding domain","Transcription factor APG OS=Oryza sativa subsp. japonica OX=39947 GN=APG PE=1 SV=1","--","--","PIF3, partial [Arabidopsis lyrata subsp. petraea] "]
["c37896.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02983|8.42182e-25|bvg:104889711|K02983 small subunit ribosomal protein S30e | (RefSeq) 40S ribosomal protein S30","[JO]","--","Ribosomal protein S30","40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3","J","Translation, ribosomal structure and biogenesis","unnamed protein product, partial [Vitis vinifera]"]
["c46472.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; ","--","[UR]","--","Dynamin central region;; Dynamin family;; Dynamin GTPase effector domain;; 50S ribosome-binding GTPase","Dynamin-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=DRP1B PE=1 SV=1","S","Function unknown","PREDICTED: dynamin-related protein 1B isoform X4 [Gossypium raimondii] "]
["c90628.graph_c0","[P]","Inorganic ion transport and metabolism ","Biological Process: cellular process (GO:0009987);; Biological Process: single-organism process (GO:0044699);; ","--","--","--","Dyp-type peroxidase family","--","P","Inorganic ion transport and metabolism","Deferrochelatase/peroxidase EfeB [Beauveria bassiana D1-5]"]
["c14386.graph_c0","[S]","Function unknown ","--","K20929|0|gra:105764535|K20929 glyoxal/methylglyoxal oxidase [EC:1.2.3.15] | (RefSeq) galactose oxidase","--","--","Glyoxal oxidase N-terminus;; Domain of unknown function (DUF1929);; Galactose oxidase, central domain","Aldehyde oxidase GLOX OS=Vitis pseudoreticulata OX=231512 GN=GLOX PE=2 SV=1","S","Function unknown","aldehyde oxidase GLOX [Durio zibethinus]"]
["c54127.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; ","K02934|5.11545e-55|gra:105786221|K02934 large subunit ribosomal protein L6e | (RefSeq) 60S ribosomal protein L6-1-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L6e;; Ribosomal protein L6, N-terminal domain","60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein BZG36_04931 [Bifiguratus adelaidae]"]
["c48120.graph_c2","--","--","--","--","[R]","General function prediction only ","--","Protein indeterminate-domain 2 OS=Arabidopsis thaliana OX=3702 GN=IDD2 PE=1 SV=1","S","Function unknown","protein indeterminate-domain 2-like isoform X2 [Durio zibethinus]"]
["c54228.graph_c0","--","--","--","--","[K]","Transcription ","--","GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1","--","--","--"]
["c86656.graph_c0","--","--","--","K03953|7.29563e-07|cme:CYME_CMM267C|K03953 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9 | (RefSeq) NADH dehydrogenase I alpha subcomplex 9, mitochondrial precursor","[C]","Energy production and conversion ","RmlD substrate binding domain","--","GM","--","NAD(P)-binding protein [Gonapodya prolifera JEL478]"]
["c63842.graph_c0","--","--","Cellular Component: endoplasmic reticulum lumen (GO:0005788);; Molecular Function: metal ion binding (GO:0046872);; ","K08057|9.77868e-44|sita:101762276|K08057 calreticulin | (RefSeq) calreticulin-like","[O]","Posttranslational modification, protein turnover, chaperones ","Calreticulin family","Calreticulin OS=Ricinus communis OX=3988 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein CDL15_Pgr020198 [Punica granatum]"]
["c57854.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: auxin response factor 6 isoform X2 [Theobroma cacao] "]
["c5730.graph_c0","--","--","--","K13137|6.73272e-08|tcc:TCM_028320|K13137 serine-threonine kinase receptor-associated protein | (RefSeq) Transducin/WD40 repeat-like superfamily protein","[I]","Lipid transport and metabolism ","--","--","S","Function unknown","PREDICTED: serine-threonine kinase receptor-associated protein-like isoform X2 [Gossypium hirsutum] "]
["c31943.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity (GO:0016740);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA36917 [Gossypium barbadense]"]
["c84683.graph_c0","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: vesicle-mediated transport (GO:0016192);; Biological Process: cellular response to drug (GO:0035690);; ","K07937|1.78898e-25|ota:Ot12g02810|K07937 ADP-ribosylation factor 1 | (RefSeq) hypothetical protein","[U]","Intracellular trafficking, secretion, and vesicular transport ","ADP-ribosylation factor family","ADP-ribosylation factor 2-B OS=Arabidopsis thaliana OX=3702 GN=ARF2-B PE=2 SV=1","S","Function unknown","hypothetical protein G7K_5972-t1 [Saitoella complicata NRRL Y-17804]"]
["c23606.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Synaptotagmin-3 OS=Arabidopsis thaliana OX=3702 GN=SYT3 PE=2 SV=1","S","Function unknown","PREDICTED: synaptotagmin-3 isoform X2 [Gossypium raimondii] "]
["c48681.graph_c0","[H]","Coenzyme transport and metabolism ","--","K15376|0|gra:105769007|K15376 gephyrin [EC:2.10.1.1 2.7.7.75] | (RefSeq) molybdopterin biosynthesis protein CNX1","[H]","Coenzyme transport and metabolism ","Probable molybdopterin binding domain;; MoeA C-terminal region (domain IV);; MoeA N-terminal region (domain I and II)","Molybdopterin biosynthesis protein CNX1 OS=Arabidopsis thaliana OX=3702 GN=CNX1 PE=1 SV=2","H","Coenzyme transport and metabolism","PREDICTED: molybdopterin biosynthesis protein CNX1 [Gossypium raimondii] "]
["c36035.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: recognition of pollen (GO:0048544);; ","--","--","--","S-locus glycoprotein domain","G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana OX=3702 GN=At5g35370 PE=2 SV=2","T","Signal transduction mechanisms","G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 [Durio zibethinus]"]
["c83456.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: intracellular (GO:0005622);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[I]","Lipid transport and metabolism ","CRAL/TRIO, N-terminal domain","Patellin-3 OS=Arabidopsis thaliana OX=3702 GN=PATL3 PE=1 SV=2","S","Function unknown","PREDICTED: patellin-3-like isoform X1 [Fragaria vesca subsp. vesca]"]
["c70721.graph_c0","--","--","Biological Process: developmental process involved in reproduction (GO:0003006);; Biological Process: proteolysis (GO:0006508);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; Biological Process: multicellular organismal process (GO:0032501);; Biological Process: anatomical structure development (GO:0048856);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Cathepsin propeptide inhibitor domain (I29)","Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. japonica OX=39947 GN=SAG39 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: senescence-specific cysteine protease SAG39-like [Gossypium hirsutum]"]
["c26013.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105763772 [Gossypium raimondii]"]
["c59946.graph_c0","--","--","Biological Process: ribosome biogenesis (GO:0042254);; ","K14771|2.66538e-12|gra:105783797|K14771 U3 small nucleolar RNA-associated protein 19 | (RefSeq) nucleolar complex protein 4 homolog","--","--","--","--","S","Function unknown","nucleolar complex protein 4, partial [Trifolium pratense]"]
["c42078.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[T]","Signal transduction mechanisms ","Protein of unknown function (DUF568);; Eukaryotic cytochrome b561","Cytochrome b561 and DOMON domain-containing protein At5g47530 OS=Arabidopsis thaliana OX=3702 GN=At5g47530 PE=2 SV=1","S","Function unknown","cytochrome b561 and DOMON domain-containing protein At5g47530-like [Durio zibethinus]"]
["c49139.graph_c0","[ET]","Amino acid transport and metabolism ;; Signal transduction mechanisms ","Molecular Function: ionotropic glutamate receptor activity (GO:0004970);; Biological Process: ion transport (GO:0006811);; Biological Process: response to wounding (GO:0009611);; Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway (GO:0009864);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ionotropic glutamate receptor signaling pathway (GO:0035235);; ","K05387|0|gra:105787382|K05387 glutamate receptor, ionotropic, plant | (RefSeq) glutamate receptor 3.6","[PET]","--","Receptor family ligand binding region;; Periplasmic binding protein;; Bacterial extracellular solute-binding proteins, family 3;; Ligand-gated ion channel","Glutamate receptor 3.6 OS=Arabidopsis thaliana OX=3702 GN=GLR3.6 PE=2 SV=1","S","Function unknown","PREDICTED: glutamate receptor 3.6-like [Gossypium arboreum] "]
["c6493.graph_c0","--","--","Molecular Function: solute:proton antiporter activity (GO:0015299);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","--","--","--","--","P","Inorganic ion transport and metabolism","PREDICTED: cation/H(+) antiporter 15-like [Gossypium raimondii] "]
["c42271.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring acyl groups (GO:0016746);; ","K13510|5.38831e-81|gra:105785145|K13510 lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase [EC:2.3.1.23 2.3.1.67] | (RefSeq) lysophospholipid acyltransferase LPEAT1-like","[I]","Lipid transport and metabolism ","Acyltransferase","Lysophospholipid acyltransferase LPEAT1 OS=Arabidopsis thaliana OX=3702 GN=LPEAT1 PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: lysophospholipid acyltransferase LPEAT1-like isoform X3 [Gossypium raimondii]"]
["c38973.graph_c1","[R]","General function prediction only ","Cellular Component: cytosol (GO:0005829);; Molecular Function: nitronate monooxygenase activity (GO:0018580);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111308352 [Durio zibethinus]"]
["c89347.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein tyrosine kinase;; Protein kinase domain","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA18116 [Gossypium barbadense]"]
["c85577.graph_c0","--","--","--","--","[E]","Amino acid transport and metabolism ","--","--","E","Amino acid transport and metabolism","--"]
["c88979.graph_c0","--","--","--","K08472|1.78385e-11|tcc:TCM_034430|K08472 mlo protein | (RefSeq) Seven transmembrane MLO family protein","--","--","Mlo family","--","--","--","PREDICTED: MLO-like protein 9 [Theobroma cacao]"]
["c81908.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein tyrosine phosphatase activity (GO:0004725);; Biological Process: protein dephosphorylation (GO:0006470);; Cellular Component: intracellular part (GO:0044424);; ","K01104|6.00723e-23|thj:104810902|K01104 protein-tyrosine phosphatase [EC:3.1.3.48] | (RefSeq) putative low molecular weight protein-tyrosine-phosphatase slr0328","[T]","Signal transduction mechanisms ","Low molecular weight phosphotyrosine protein phosphatase","--","T","Signal transduction mechanisms","phosphotyrosine protein phosphatase [Kwoniella mangroviensis CBS 10435]"]
["c29034.graph_c0","--","--","--","--","--","--","--","--","--","--","putative C5H10.03 [Gossypium arboreum]"]
["c43435.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: acid phosphatase activity (GO:0003993);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: metal ion binding (GO:0046872);; ","--","[G]","Carbohydrate transport and metabolism ","Calcineurin-like phosphoesterase;; Iron/zinc purple acid phosphatase-like protein C;; Purple acid Phosphatase, N-terminal domain","Purple acid phosphatase 18 OS=Arabidopsis thaliana OX=3702 GN=PAP18 PE=2 SV=1","S","Function unknown","PREDICTED: purple acid phosphatase 18 [Gossypium raimondii] "]
["c83667.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein PTT_15016 [Pyrenophora teres f. teres 0-1]"]
["c54036.graph_c0","--","--","Cellular Component: plasmodesma (GO:0009506);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105765097 isoform X1 [Gossypium raimondii] "]
["c26771.graph_c0","--","--","Biological Process: ribosomal small subunit assembly (GO:0000028);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Molecular Function: metal ion binding (GO:0046872);; ","K02978|6.76915e-20|mtr:MTR_1g111970|K02978 small subunit ribosomal protein S27e | (RefSeq) 40S ribosomal protein S27-1","[J]","Translation, ribosomal structure and biogenesis ","--","40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S27-2 [Cicer arietinum] "]
["c28846.graph_c0","--","--","Biological Process: response to stress (GO:0006950);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Universal stress protein family","--","S","Function unknown","hypothetical protein B456_013G096300 [Gossypium raimondii]"]
["c43141.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","--","--","--","T","Signal transduction mechanisms","PREDICTED: uncharacterized protein LOC105790952 isoform X1 [Gossypium raimondii] "]
["c32522.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Domain of unknown function (DUF588)","CASP-like protein XL3 OS=Gossypium hirsutum OX=3635 GN=XL3 PE=2 SV=1","S","Function unknown","CASP-like protein XL3 [Durio zibethinus]"]
["c45807.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108456830 [Gossypium arboreum] "]
["c34195.graph_c0","[K]","Transcription ","Cellular Component: cytosol (GO:0005829);; Cellular Component: integral component of membrane (GO:0016021);; ","K10268|2.61852e-107|gra:105766560|K10268 F-box and leucine-rich repeat protein 2/20 | (RefSeq) F-box protein At3g58530","[R]","General function prediction only ","Leucine Rich repeat","F-box protein At3g58530 OS=Arabidopsis thaliana OX=3702 GN=At3g58530 PE=2 SV=1","S","Function unknown","PREDICTED: F-box protein At3g58530 [Gossypium arboreum] "]
["c80807.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|3.97851e-64|tcc:TCM_025488|K09422 myb proto-oncogene protein, plant | (RefSeq) Myb domain protein 107","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB53 OS=Arabidopsis thaliana OX=3702 GN=MYB53 PE=1 SV=1","K","Transcription","transcription factor MYB41 [Herrania umbratica] "]
["c53960.graph_c0","--","--","Molecular Function: transaminase activity (GO:0008483);; Biological Process: biosynthetic process (GO:0009058);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K00814|8.27333e-22|gra:105769400|K00814 alanine transaminase [EC:2.6.1.2] | (RefSeq) alanine aminotransferase 2, mitochondrial","[E]","Amino acid transport and metabolism ","--","Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALAAT2 PE=1 SV=1","E","Amino acid transport and metabolism","alanine aminotransferase 2, mitochondrial, partial [Prunus avium]"]
["c56278.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: structural constituent of ribosome (GO:0003735);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; ","K14780|4.11766e-37|gra:105794496|K14780 ATP-dependent RNA helicase DHX37/DHR1 [EC:3.6.4.13] | (RefSeq) putative ATP-dependent RNA helicase PB1A10.06c","[AJ]","--","--","ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana OX=3702 GN=FAS4 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein GOBAR_DD16466 [Gossypium barbadense]"]
["c33398.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","--","--","S","Function unknown","hypothetical protein COLO4_25708 [Corchorus olitorius] "]
["c24210.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: metal ion transport (GO:0030001);; Molecular Function: transition metal ion binding (GO:0046914);; Biological Process: cellular transition metal ion homeostasis (GO:0046916);; ","--","[P]","Inorganic ion transport and metabolism ","Heavy-metal-associated domain","Heavy metal-associated isoprenylated plant protein 8 OS=Arabidopsis thaliana OX=3702 GN=HIPP08 PE=3 SV=1","S","Function unknown","PREDICTED: neurofilament medium polypeptide-like [Fragaria vesca subsp. vesca]"]
["c49843.graph_c1","[E]","Amino acid transport and metabolism ","--","--","[E]","Amino acid transport and metabolism ","Amino acid permease;; Amino acid permease;; Protein phosphatase 2C","Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana OX=3702 GN=At1g31830 PE=2 SV=1","E","Amino acid transport and metabolism","probable polyamine transporter At1g31830 isoform X1 [Durio zibethinus] "]
["c91255.graph_c0","--","--","--","--","[S]","Function unknown ","--","--","S","Function unknown","--"]
["c49311.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Armadillo/beta-catenin-like repeat;; Atypical Arm repeat","Importin subunit alpha-4 OS=Arabidopsis thaliana OX=3702 GN=IMPA4 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein GOBAR_DD03083 [Gossypium barbadense]"]
["c1292.graph_c0","--","--","--","--","--","--","Perilipin family","--","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein K493DRAFT_310515 [Basidiobolus meristosporus CBS 931.73]"]
["c47963.graph_c0","--","--","--","--","--","--","C2 domain","Protein SRC2 OS=Glycine max OX=3847 GN=SRC2 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107922005 isoform X2 [Gossypium hirsutum]"]
["c80667.graph_c0","--","--","Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: hydrolase activity (GO:0016787);; ","K16818|3.18236e-44|gra:105762133|K16818 phospholipase A1 [EC:3.1.1.32] | (RefSeq) phospholipase A(1) DAD1, chloroplastic-like","[I]","Lipid transport and metabolism ","--","Phospholipase A(1) DAD1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAD1 PE=1 SV=1","S","Function unknown","PREDICTED: phospholipase A(1) DAD1, chloroplastic-like [Gossypium hirsutum] "]
["c54979.graph_c0","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor MYC2-like [Pyrus x bretschneideri]"]
["c37832.graph_c0","[H]","Coenzyme transport and metabolism ","Cellular Component: cytosol (GO:0005829);; Biological Process: response to stress (GO:0006950);; Biological Process: thiamine biosynthetic process (GO:0009228);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: thiazole biosynthetic process (GO:0052837);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03146|0|osa:4343443|K03146 thiamine thiazole synthase | (RefSeq) thiamine thiazole synthase 2, chloroplastic","[R]","General function prediction only ","Thi4 family;; FAD dependent oxidoreductase;; FAD binding domain;; NAD(P)-binding Rossmann-like domain;; GMC oxidoreductase","Thiamine thiazole synthase 2, chloroplastic OS=Sorghum bicolor OX=4558 GN=THI1-2 PE=3 SV=1","H","Coenzyme transport and metabolism","hypothetical protein OsI_26282 [Oryza sativa Indica Group]"]
["c50299.graph_c0","--","--","--","--","--","--","--","--","--","--","protein DEHYDRATION-INDUCED 19 homolog 3-like [Carica papaya]"]
["c23144.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: transferase activity (GO:0016740);; ","--","[C]","Energy production and conversion ","ATP:guanido phosphotransferase, C-terminal catalytic domain;; ATP:guanido phosphotransferase, N-terminal domain","--","E","Amino acid transport and metabolism","unnamed protein product [Albugo candida]"]
["c354.graph_c1","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: transmembrane protein 87B-like [Gossypium hirsutum]"]
["c43329.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: glutaminase activity (GO:0004359);; Cellular Component: cytosol (GO:0005829);; Biological Process: pyridoxine metabolic process (GO:0008614);; Biological Process: vitamin B6 biosynthetic process (GO:0042819);; Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823);; Molecular Function: protein heterodimerization activity (GO:0046982);; Cellular Component: glutaminase complex (GO:1903600);; ","K08681|4.30143e-120|gra:105768688|K08681 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] | (RefSeq) probable pyridoxal 5'-phosphate synthase subunit PDX2","[H]","Coenzyme transport and metabolism ","SNO glutamine amidotransferase family;; SNO glutamine amidotransferase family","Probable pyridoxal 5&apos;-phosphate synthase subunit PDX2 OS=Arabidopsis thaliana OX=3702 GN=PDX2 PE=1 SV=1","H","Coenzyme transport and metabolism","PREDICTED: probable pyridoxal 5&apos;-phosphate synthase subunit PDX2 [Gossypium raimondii] "]
["c55399.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","S","Function unknown","E3 ubiquitin-protein ligase [Corchorus olitorius]"]
["c68772.graph_c0","--","--","Biological Process: ribosomal small subunit assembly (GO:0000028);; Biological Process: ribosomal small subunit export from nucleus (GO:0000056);; Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleolus (GO:0005730);; Biological Process: rRNA export from nucleus (GO:0006407);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02958|1.04575e-12|csl:COCSUDRAFT_31273|K02958 small subunit ribosomal protein S15e | (RefSeq) ribosomal protein S19","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S19","40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S15 [Bifiguratus adelaidae]"]
["c16439.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","--","--","--","Dof domain, zinc finger","Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana OX=3702 GN=DOF3.6 PE=1 SV=2","S","Function unknown","PREDICTED: dof zinc finger protein DOF2.4 [Theobroma cacao] "]
["c44571.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","hypothetical protein B456_011G042500 [Gossypium raimondii]"]
["c78459.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: cobalt ion binding (GO:0050897);; ","--","--","--","--","CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CBSX3 PE=1 SV=1","S","Function unknown","PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Fragaria vesca subsp. vesca]"]
["c84568.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_045510 [Theobroma cacao]"]
["c26313.graph_c1","[P]","Inorganic ion transport and metabolism ","Molecular Function: catalase activity (GO:0004096);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","--","--","--","Catalase","--","S","Function unknown","hypothetical protein BTJ68_14530 [Hortaea werneckii EXF-2000]"]
["c31992.graph_c0","--","--","Molecular Function: aromatic amino acid transmembrane transporter activity (GO:0015173);; Molecular Function: neutral amino acid transmembrane transporter activity (GO:0015175);; Biological Process: aromatic amino acid transport (GO:0015801);; Biological Process: neutral amino acid transport (GO:0015804);; Cellular Component: integral component of membrane (GO:0016021);; ","K14209|1.26805e-49|gra:105799590|K14209 solute carrier family 36 (proton-coupled amino acid transporter) | (RefSeq) proton-coupled amino acid transporter 3-like","[E]","Amino acid transport and metabolism ","Transmembrane amino acid transporter protein","Amino acid transporter ANT1 OS=Arabidopsis thaliana OX=3702 GN=ANT1 PE=1 SV=1","E","Amino acid transport and metabolism","amino acid transporter ANT1 isoform X1 [Durio zibethinus]"]
["c24004.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","[R]","General function prediction only ","Leucine rich repeat N-terminal domain","Receptor-like protein 9b OS=Arabidopsis thaliana OX=3702 GN=RLP9B PE=3 SV=1","S","Function unknown","hypothetical protein GOBAR_DD35793 [Gossypium barbadense]"]
["c93112.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: mitochondrion inheritance (GO:0000001);; Biological Process: replicative cell aging (GO:0001302);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: protein folding (GO:0006457);; Biological Process: inner mitochondrial membrane organization (GO:0007007);; Biological Process: negative regulation of proteolysis (GO:0045861);; Biological Process: mitochondrion morphogenesis (GO:0070584);; ","K17080|1.03454e-19|cme:CYME_CMJ078C|K17080 prohibitin 1 | (RefSeq) probable prohibitin","[O]","Posttranslational modification, protein turnover, chaperones ","SPFH domain / Band 7 family","Prohibitin-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","prohibitin [Diplocarpon rosae]"]
["c67932.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD20404 [Gossypium barbadense]"]
["c68090.graph_c0","--","--","--","--","--","--","Sieve element occlusion N-terminus","Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1","--","--","PREDICTED: uncharacterized protein LOC101298363 [Fragaria vesca subsp. vesca]"]
["c26369.graph_c0","[G]","Carbohydrate transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; ","--","[R]","General function prediction only ","Sugar (and other) transporter","Probable polyol transporter 6 OS=Arabidopsis thaliana OX=3702 GN=PLT6 PE=2 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: polyol transporter 5-like isoform X2 [Gossypium raimondii]"]
["c45658.graph_c0","--","--","--","--","[L]","Replication, recombination and repair ","--","--","L","Replication, recombination and repair","uncharacterized protein LOC111310036 [Durio zibethinus]"]
["c80422.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|2.49514e-24|gra:105794922|K09422 myb proto-oncogene protein, plant | (RefSeq) myb-related protein Myb4-like","[K]","Transcription ","--","Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1","K","Transcription","GAMYB transcription factor [Trema orientalis]"]
["c85006.graph_c0","--","--","Biological Process: ATP hydrolysis coupled proton transport (GO:0015991);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: proton-transporting V-type ATPase, V0 domain (GO:0033179);; Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961);; ","K02153|3.64975e-16|crb:CARUB_v10006005mg|K02153 V-type H+-transporting ATPase subunit e | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","ATP synthase subunit H","V-type proton ATPase subunit e2 OS=Arabidopsis thaliana OX=3702 GN=VHA-e2 PE=3 SV=1","C","Energy production and conversion","TATA box binding protein associated factor (TAF) [Corchorus olitorius]"]
["c71681.graph_c0","--","--","--","--","[R]","General function prediction only ","Retrotransposon gag protein","--","L","Replication, recombination and repair","uncharacterized protein LOC112094741 [Morus notabilis]"]
["c42848.graph_c0","[C]","Energy production and conversion ","Molecular Function: aldehyde dehydrogenase (NAD) activity (GO:0004029);; Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity (GO:0004030);; Biological Process: cellular aldehyde metabolic process (GO:0006081);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: aldehyde dehydrogenase (NADP+) activity (GO:0033721);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00128|0|gra:105779810|K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | (RefSeq) aldehyde dehydrogenase family 3 member H1-like","[C]","Energy production and conversion ","Aldehyde dehydrogenase family;; Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 3 member I1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALDH3I1 PE=1 SV=2","C","Energy production and conversion","PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Gossypium arboreum]"]
["c95131.graph_c0","--","--","--","--","--","--","--","--","J","Translation, ribosomal structure and biogenesis","--"]
["c29356.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","--","--","--","P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 3, partial [Theobroma cacao]"]
["c5166.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Late exocytosis, associated with Golgi transport;; Cytosolic domain of 10TM putative phosphate transporter","CSC1-like protein At3g21620 OS=Arabidopsis thaliana OX=3702 GN=At3g21620 PE=2 SV=1","S","Function unknown","PREDICTED: CSC1-like protein At4g02900 [Gossypium arboreum] "]
["c30180.graph_c0","--","--","Cellular Component: chloroplast stroma (GO:0009570);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107928566 [Gossypium hirsutum] "]
["c62702.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1","K","Transcription","PREDICTED: transcription factor DIVARICATA-like, partial [Erythranthe guttata]"]
["c45211.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC110428269 [Herrania umbratica]"]
["c36956.graph_c0","--","--","Cellular Component: mitochondrial intermembrane space (GO:0005758);; Biological Process: protein import into mitochondrial inner membrane (GO:0045039);; Molecular Function: metal ion binding (GO:0046872);; ","K17778|3.13075e-29|gra:105788754|K17778 mitochondrial import inner membrane translocase subunit TIM10 | (RefSeq) mitochondrial import inner membrane translocase subunit TIM10-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Tim10/DDP family zinc finger","Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana OX=3702 GN=TIM10 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_003G126500 [Gossypium raimondii]"]
["c21467.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","--","--","--","S","Function unknown","hypothetical protein B456_005G179700 [Gossypium raimondii] "]
["c47406.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: ER body (GO:0010168);; Biological Process: negative regulation of autophagy (GO:0010507);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: rRNA catabolic process (GO:0016075);; Molecular Function: ribonuclease T2 activity (GO:0033897);; Biological Process: RNA phosphodiester bond hydrolysis, endonucleolytic (GO:0090502);; ","K01166|9.5736e-25|gra:105803933|K01166 ribonuclease T2 [EC:3.1.27.1] | (RefSeq) ribonuclease 2-like","[A]","RNA processing and modification ","--","Ribonuclease 2 OS=Arabidopsis thaliana OX=3702 GN=RNS2 PE=2 SV=1","S","Function unknown","hypothetical protein B456_001G226100 [Gossypium raimondii]"]
["c53911.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: DNA ligase 1 [Theobroma cacao]"]
["c15410.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii] "]
["c37858.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Biological Process: auxin polar transport (GO:0009926);; Biological Process: regulation of meristem structural organization (GO:0009934);; Biological Process: secondary shoot formation (GO:0010223);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","K20771|6.79272e-161|gra:105767733|K20771 carlactone C-19 oxidase [EC:1.14.-.-] | (RefSeq) cytochrome P450 711A1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 711A1 OS=Arabidopsis thaliana OX=3702 GN=CYP711A1 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: cytochrome P450 711A1 [Gossypium arboreum]"]
["c54240.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Molecular Function: ADP binding (GO:0043531);; ","--","--","--","--","--","S","Function unknown","PREDICTED: TMV resistance protein N-like [Gossypium raimondii] "]
["c84376.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein BTJ68_11479 [Hortaea werneckii EXF-2000]"]
["c41056.graph_c0","[S]","Function unknown ","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","[R]","General function prediction only ","MORN repeat;; Ribosomal L37ae protein family","60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0557000 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107920554 [Gossypium hirsutum]"]
["c41883.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Molecular Function: glucuronoxylan glucuronosyltransferase activity (GO:0080116);; ","K20890|0|gra:105777585|K20890 xylan alpha-glucuronosyltransferase [EC:2.4.1.-] | (RefSeq) UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like","[G]","Carbohydrate transport and metabolism ","Glycosyl transferase family 8","UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GUX1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [Gossypium raimondii] "]
["c22427.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02962|2.82153e-59|ccp:CHC_T00010047001|K02962 small subunit ribosomal protein S17e | (RefSeq) 40S ribosomal protein S17","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal S17","40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c45385.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","K05868|1.51083e-138|gra:105790883|K05868 cyclin B | (RefSeq) putative cyclin-B3-1","[D]","Cell cycle control, cell division, chromosome partitioning ","Cyclin, N-terminal domain;; Cyclin, C-terminal domain","Putative cyclin-B3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCB3-1 PE=3 SV=2","D","Cell cycle control, cell division, chromosome partitioning","PREDICTED: putative cyclin-B3-1 isoform X2 [Gossypium hirsutum]"]
["c52898.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=2 SV=1","S","Function unknown","PREDICTED: receptor-like protein kinase HSL1 [Gossypium hirsutum]"]
["c25120.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: small ribosomal subunit (GO:0015935);; ","K02988|1.29499e-66|gra:105772817|K02988 small subunit ribosomal protein S5 | (RefSeq) 30S ribosomal protein S5, chloroplastic-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S5, N-terminal domain;; Ribosomal protein S5, C-terminal domain","30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps5 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein B456_010G256400 [Gossypium raimondii]"]
["c84932.graph_c0","--","--","--","K14496|4.0339e-42|fve:101297328|K14496 abscisic acid receptor PYR/PYL family | (RefSeq) abscisic acid receptor PYL12-like","--","--","Polyketide cyclase / dehydrase and lipid transport","Abscisic acid receptor PYL11 OS=Arabidopsis thaliana OX=3702 GN=PYL11 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: abscisic acid receptor PYL12-like [Fragaria vesca subsp. vesca]"]
["c15810.graph_c0","--","--","Molecular Function: damaged DNA binding (GO:0003684);; Molecular Function: ATP binding (GO:0005524);; Biological Process: pyrimidine dimer repair (GO:0006290);; Biological Process: mismatch repair (GO:0006298);; Molecular Function: mismatched DNA binding (GO:0030983);; ","K08737|1.78691e-47|gra:105794794|K08737 DNA mismatch repair protein MSH6 | (RefSeq) DNA mismatch repair protein MSH6","[L]","Replication, recombination and repair ","--","DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana OX=3702 GN=MSH6 PE=1 SV=2","L","Replication, recombination and repair","hypothetical protein GOBAR_AA05604 [Gossypium barbadense]"]
["c100.graph_c1","--","--","Molecular Function: UDP-glycosyltransferase activity (GO:0008194);; Biological Process: flavonoid biosynthetic process (GO:0009813);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: flavonoid glucuronidation (GO:0052696);; ","K13495|1.58766e-104|gra:105786216|K13495 cis-zeatin O-glucosyltransferase [EC:2.4.1.215] | (RefSeq) zeatin O-glucosyltransferase-like","--","--","--","Zeatin O-glucosyltransferase OS=Phaseolus lunatus OX=3884 GN=ZOG1 PE=2 SV=1","S","Function unknown","PREDICTED: zeatin O-glucosyltransferase-like [Gossypium hirsutum]"]
["c46988.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","--","Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana OX=3702 GN=At5g18500 PE=2 SV=1","T","Signal transduction mechanisms","probable receptor-like protein kinase At5g18500 isoform X2 [Durio zibethinus]"]
["c46592.graph_c0","--","--","Molecular Function: double-stranded DNA binding (GO:0003690);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; ","K15032|0|gra:105782952|K15032 mTERF domain-containing protein, mitochondrial | (RefSeq) uncharacterized LOC105782952","[KR]","--","mTERF;; mTERF;; S25 ribosomal protein","Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105782952 [Gossypium raimondii] "]
["c10327.graph_c1","--","--","Biological Process: transcription, RNA-templated (GO:0001172);; Molecular Function: RNA-directed 5'-3' RNA polymerase activity (GO:0003968);; Cellular Component: integral component of membrane (GO:0016021);; ","K11699|2.07943e-22|gra:105789401|K11699 RNA-dependent RNA polymerase [EC:2.7.7.48] | (RefSeq) probable RNA-dependent RNA polymerase 5","[A]","RNA processing and modification ","--","Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana OX=3702 GN=RDR3 PE=3 SV=2","K","Transcription","PREDICTED: probable RNA-dependent RNA polymerase 5 [Gossypium hirsutum]"]
["c32463.graph_c0","--","--","Molecular Function: ligase activity (GO:0016874);; ","--","--","--","--","--","S","Function unknown","Asparagine--tRNA ligase [Gossypium arboreum] "]
["c36510.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107901117 isoform X3 [Gossypium hirsutum]"]
["c26418.graph_c0","--","--","--","--","[L]","Replication, recombination and repair ","--","Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1","S","Function unknown","PREDICTED: putative nuclease HARBI1 [Gossypium arboreum] "]
["c46036.graph_c1","--","--","Molecular Function: DNA clamp loader activity (GO:0003689);; Molecular Function: DNA-directed DNA polymerase activity (GO:0003887);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: DNA replication factor C complex (GO:0005663);; Biological Process: DNA-dependent DNA replication (GO:0006261);; Biological Process: negative regulation of defense response (GO:0031348);; Biological Process: DNA biosynthetic process (GO:0071897);; ","K10756|2.70769e-22|gra:105770340|K10756 replication factor C subunit 3/5 | (RefSeq) replication factor C subunit 5","[L]","Replication, recombination and repair ","--","Replication factor C subunit 5 OS=Arabidopsis thaliana OX=3702 GN=RFC5 PE=1 SV=1","L","Replication, recombination and repair","PREDICTED: replication factor C subunit 5 [Gossypium hirsutum]"]
["c92823.graph_c0","--","--","--","--","[TW]","--","Integrin beta tail domain","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c6273.graph_c0","--","--","Cellular Component: extracellular region (GO:0005576);; Cellular Component: vesicle (GO:0031982);; Biological Process: regulation of double fertilization forming a zygote and endosperm (GO:0080155);; Biological Process: regulation of protein localization to cell surface (GO:2000008);; ","--","--","--","--","Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana OX=3702 GN=EC1.4 PE=2 SV=1","S","Function unknown","PREDICTED: egg cell-secreted protein 1.4-like [Gossypium raimondii] "]
["c32926.graph_c0","--","--","Molecular Function: serine-type endopeptidase inhibitor activity (GO:0004867);; Biological Process: response to wounding (GO:0009611);; Biological Process: negative regulation of endopeptidase activity (GO:0010951);; ","--","--","--","Potato inhibitor I family","Inhibitor of trypsin and hageman factor OS=Cucurbita maxima OX=3661 PE=1 SV=1","S","Function unknown","hypothetical protein B456_007G143500 [Gossypium raimondii] "]
["c71597.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: nucleoside diphosphate kinase activity (GO:0004550);; Molecular Function: ATP binding (GO:0005524);; Biological Process: nucleoside diphosphate phosphorylation (GO:0006165);; Biological Process: GTP biosynthetic process (GO:0006183);; Biological Process: UTP biosynthetic process (GO:0006228);; Biological Process: CTP biosynthetic process (GO:0006241);; ","K00940|1.65171e-56|pda:103704602|K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] | (RefSeq) nucleoside diphosphate kinase B","[F]","Nucleotide transport and metabolism ","Nucleoside diphosphate kinase","Nucleoside diphosphate kinase 1 OS=Pisum sativum OX=3888 GN=NDPK1 PE=2 SV=1","F","Nucleotide transport and metabolism","hypothetical protein GUITHDRAFT_93413, partial [Guillardia theta CCMP2712] "]
["c38611.graph_c0","--","--","Cellular Component: anaphase-promoting complex (GO:0005680);; Cellular Component: spindle (GO:0005819);; Biological Process: megagametogenesis (GO:0009561);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Molecular Function: ubiquitin protein ligase activity (GO:0061630);; ","K03349|0|gra:105783419|K03349 anaphase-promoting complex subunit 2 | (RefSeq) anaphase-promoting complex subunit 2","[DO]","--","Cullin family","Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=APC2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_013G087900 [Gossypium raimondii]"]
["c94581.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02926|7.11506e-13|fve:101304072|K02926 large subunit ribosomal protein L4 | (RefSeq) 39S ribosomal protein L4, mitochondrial","[J]","Translation, ribosomal structure and biogenesis ","--","--","J","Translation, ribosomal structure and biogenesis","uncharacterized protein LOC21397305 [Morus notabilis] "]
["c42285.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","Uncharacterized protein TCM_002644 isoform 1 [Theobroma cacao]"]
["c44841.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: cytoplasm (GO:0005737);; Molecular Function: RNA methyltransferase activity (GO:0008173);; Cellular Component: membrane (GO:0016020);; Biological Process: tRNA methylation (GO:0030488);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; Biological Process: rRNA base methylation (GO:0070475);; ","K06941|1.58118e-136|gra:105764270|K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] | (RefSeq) uncharacterized LOC105764270","--","--","--","--","J","Translation, ribosomal structure and biogenesis","hypothetical protein GOBAR_AA01781 [Gossypium barbadense]"]
["c20248.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","hypothetical protein GOBAR_AA03756 [Gossypium barbadense]"]
["c88204.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; ","K08908|2.01514e-37|sot:102594790|K08908 light-harvesting complex I chlorophyll a/b binding protein 2 | (RefSeq) chlorophyll a-b binding protein 7, chloroplastic","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1","S","Function unknown","unknown [Picea sitchensis]"]
["c29387.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD27712 [Gossypium barbadense]"]
["c50578.graph_c0","--","--","--","--","--","--","Agglutinin domain;; Aerolysin toxin","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107927365 [Gossypium hirsutum]"]
["c88103.graph_c0","--","--","--","K10802|3.49361e-16|vcn:VOLCADRAFT_72419|K10802 high mobility group protein B1 | (RefSeq) hypothetical protein","[R]","General function prediction only ","HMG (high mobility group) box;; HMG-box domain","FACT complex subunit SSRP1 OS=Vicia faba OX=3906 GN=SSRP1 PE=2 SV=1","B","Chromatin structure and dynamics","hypothetical protein IQ06DRAFT_377131 [Stagonospora sp. SRC1lsM3a]"]
["c65786.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 82A4 OS=Glycine max OX=3847 GN=CYP82A4 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein GOBAR_DD20208 [Gossypium barbadense]"]
["c91871.graph_c0","[F]","Nucleotide transport and metabolism ","Cellular Component: cytoplasm (GO:0005737);; Biological Process: nucleoside metabolic process (GO:0009116);; Molecular Function: transferase activity, transferring pentosyl groups (GO:0016763);; Biological Process: purine-containing compound salvage (GO:0043101);; Biological Process: single-organism biosynthetic process (GO:0044711);; ","K00759|2.84587e-19|gra:105769504|K00759 adenine phosphoribosyltransferase [EC:2.4.2.7] | (RefSeq) adenine phosphoribosyltransferase 1-like","[F]","Nucleotide transport and metabolism ","Phosphoribosyl transferase domain","Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=APT2 PE=1 SV=1","F","Nucleotide transport and metabolism","adenine phosphoribosyltransferase [Wallemia mellicola CBS 633.66] "]
["c66614.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CDL12_22326 [Handroanthus impetiginosus]"]
["c21241.graph_c1","--","--","--","--","--","--","BURP domain","BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=BURP3 PE=2 SV=1","S","Function unknown","PREDICTED: BURP domain-containing protein BNM2A [Theobroma cacao]"]
["c28220.graph_c0","--","--","Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);; Biological Process: positive regulation of GTPase activity (GO:0043547);; ","--","--","--","PRONE (Plant-specific Rop nucleotide exchanger)","Rop guanine nucleotide exchange factor 9 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF9 PE=1 SV=1","S","Function unknown","PREDICTED: rop guanine nucleotide exchange factor 12-like [Gossypium hirsutum]"]
["c43659.graph_c0","--","--","--","--","[S]","Function unknown ","Armadillo/beta-catenin-like repeat","U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3","S","Function unknown","PREDICTED: U-box domain-containing protein 4-like isoform X2 [Gossypium raimondii] "]
["c49717.graph_c0","--","--","--","--","--","--","Plant family of unknown function (DUF810)","Protein unc-13 homolog OS=Arabidopsis thaliana OX=3702 GN=PATROL1 PE=2 SV=1","S","Function unknown","uncharacterized protein LOC111284603 [Durio zibethinus]"]
["c38075.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cellular Component: cytoplasm (GO:0005737);; Cellular Component: integral component of membrane (GO:0016021);; ","K06287|3.75691e-25|gra:105793789|K06287 septum formation protein | (RefSeq) maf-like protein DDB_G0281937","[D]","Cell cycle control, cell division, chromosome partitioning ","Maf-like protein","--","D","Cell cycle control, cell division, chromosome partitioning","hypothetical protein B456_005G107900 [Gossypium raimondii]"]
["c69716.graph_c0","--","--","--","--","[S]","Function unknown ","--","--","S","Function unknown","--"]
["c52718.graph_c0","--","--","--","--","--","--","--","Formin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=FH20 PE=2 SV=3","S","Function unknown","LOW QUALITY PROTEIN: formin-like protein 20 [Durio zibethinus]"]
["c32955.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; ","--","--","--","Arabidopsis broad-spectrum mildew resistance protein RPW8","Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana OX=3702 GN=At4g33300 PE=2 SV=3","S","Function unknown","hypothetical protein F383_27744 [Gossypium arboreum]"]
["c27424.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1645)","--","S","Function unknown","hypothetical protein GOBAR_DD01160 [Gossypium barbadense]"]
["c41926.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","[S]","Function unknown ","U-box domain","U-box domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=PUB6 PE=2 SV=2","S","Function unknown","PREDICTED: U-box domain-containing protein 5-like isoform X1 [Gossypium raimondii] "]
["c30954.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC110421282 [Herrania umbratica]"]
["c22956.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: polygalacturonase activity (GO:0004650);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: lyase activity (GO:0016829);; ","--","--","--","Glycosyl hydrolases family 28","Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: probable polygalacturonase isoform X1 [Gossypium arboreum]"]
["c4903.graph_c0","--","--","--","--","--","--","--","--","--","--","Geminivirus AR1/BR1 coat protein [Corchorus capsularis]"]
["c19895.graph_c0","[K]","Transcription ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Inactive LRR receptor-like serine/threonine-protein kinase BIR2 OS=Arabidopsis thaliana OX=3702 GN=BIR2 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Gossypium arboreum]"]
["c56248.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02974|3.80991e-50|ppp:PHYPADRAFT_154945|K02974 small subunit ribosomal protein S24e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S24e","40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","unknown [Lotus japonicus]"]
["c235.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: endonuclease activity (GO:0004519);; Cellular Component: intracellular (GO:0005622);; Biological Process: DNA repair (GO:0006281);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: DNA integration (GO:0015074);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_002126 [Vitis vinifera]"]
["c23406.graph_c2","--","--","--","K04382|4.13406e-07|tcc:TCM_040192|K04382 serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] | (RefSeq) Phosphatase 2A-3","[T]","Signal transduction mechanisms ","--","Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. japonica OX=39947 GN=PP2A2 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Ziziphus jujuba]"]
["c22158.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: intracellular (GO:0005622);; Biological Process: peptidyl-serine phosphorylation (GO:0018105);; Biological Process: intracellular signal transduction (GO:0035556);; ","--","[T]","Signal transduction mechanisms ","PH domain","3-phosphoinositide-dependent protein kinase 2 OS=Arabidopsis thaliana OX=3702 GN=PDPK2 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD20170 [Gossypium barbadense]"]
["c93033.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; ","K03283|5.24114e-32|aip:107614624|K03283 heat shock 70kDa protein 1/8 | (RefSeq) heat shock 70 kDa protein 5-like","[O]","Posttranslational modification, protein turnover, chaperones ","NAD-specific glutamate dehydrogenase;; Hsp70 protein","Heat shock 70 kDa protein OS=Achlya klebsiana OX=4767 GN=HSP70 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein BC1G_10846 [Botrytis cinerea B05.10]"]
["c29615.graph_c0","--","--","--","--","--","--","TCP family transcription factor","Transcription factor TCP4 OS=Arabidopsis thaliana OX=3702 GN=TCP4 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_AA08205 [Gossypium barbadense]"]
["c51217.graph_c0","--","--","--","K01657|1.19658e-10|gra:105771221|K01657 anthranilate synthase component I [EC:4.1.3.27] | (RefSeq) anthranilate synthase alpha subunit 1, chloroplastic-like","--","--","--","--","--","--","PREDICTED: anthranilate synthase alpha subunit 1, chloroplastic-like [Gossypium hirsutum]"]
["c49638.graph_c1","--","--","--","--","--","--","N-terminal C2 in EEIG1 and EHBP1 proteins","--","S","Function unknown","restin homolog [Herrania umbratica] "]
["c40158.graph_c0","--","--","Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Cellular Component: spliceosomal complex (GO:0005681);; ","K12873|3.42695e-58|vra:106779064|K12873 bud site selection protein 31 | (RefSeq) protein BUD31 homolog 2-like","[K]","Transcription ","G10 protein","Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0446300 PE=2 SV=1","DK","--","protein BUD31 homolog 2-like [Vigna radiata var. radiata]"]
["c78025.graph_c0","--","--","--","--","[C]","Energy production and conversion ","NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)","--","C","Energy production and conversion","--"]
["c40854.graph_c0","[Z]","Cytoskeleton ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: cytoskeleton (GO:0005856);; ","--","[Z]","Cytoskeleton ","Actin","Actin OS=Coleochaete scutata OX=3125 PE=2 SV=1","Z","Cytoskeleton","putative actin, partial [Rhizopogon vinicolor AM-OR11-026]"]
["c49931.graph_c0","--","--","--","K12616|0|gra:105790253|K12616 enhancer of mRNA-decapping protein 4 | (RefSeq) enhancer of mRNA-decapping protein 4-like","[R]","General function prediction only ","WD40 region of Ge1, enhancer of mRNA-decapping protein;; WD domain, G-beta repeat","Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana OX=3702 GN=VCS PE=1 SV=1","S","Function unknown","PREDICTED: enhancer of mRNA-decapping protein 4-like [Gossypium raimondii] "]
["c27862.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","--","--","--","O-fucosyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=OFUT7 PE=2 SV=1","S","Function unknown","uncharacterized protein At1g04910-like [Durio zibethinus] "]
["c23655.graph_c0","--","--","Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: protein polyubiquitination (GO:0000209);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: ubiquitin conjugating enzyme binding (GO:0031624);; Biological Process: positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Molecular Function: ubiquitin protein ligase activity (GO:0061630);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","IBR domain, a half RING-finger domain","ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107891494 [Gossypium hirsutum]"]
["c44527.graph_c0","--","--","--","K12165|7.14298e-88|csv:101222144|K12165 ufm1-conjugating enzyme 1 | (RefSeq) ubiquitin-fold modifier-conjugating enzyme 1","[S]","Function unknown ","Ubiquitin-fold modifier-conjugating enzyme 1","Ubiquitin-fold modifier-conjugating enzyme 1 OS=Arabidopsis thaliana OX=3702 GN=At1g27530 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_009G278400 [Gossypium raimondii]"]
["c18116.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108454815 [Gossypium arboreum]"]
["c51097.graph_c0","--","--","Cellular Component: plasmodesma (GO:0009506);; ","--","--","--","Probable lipid transfer;; Protease inhibitor/seed storage/LTP family","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: non-specific lipid-transfer protein 4-like [Gossypium raimondii] "]
["c38485.graph_c0","--","--","Biological Process: metal ion transport (GO:0030001);; Cellular Component: intracellular part (GO:0044424);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: system development (GO:0048731);; Biological Process: metal ion homeostasis (GO:0055065);; ","--","[P]","Inorganic ion transport and metabolism ","--","Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=NAKR1 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC108459427 [Gossypium arboreum]"]
["c4260.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: aging (GO:0007568);; Cellular Component: plant-type cell wall (GO:0009505);; Biological Process: gibberellic acid mediated signaling pathway (GO:0009740);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: plant-type cell wall loosening (GO:0009828);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall biogenesis (GO:0042546);; Cellular Component: apoplast (GO:0048046);; ","K08235|6.23868e-100|ath:AT4G30270|K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] | (RefSeq) XTH24; xyloglucan endotransglucosylase/hydrolase 24","--","--","Glycosyl hydrolases family 16","Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana OX=3702 GN=XTH24 PE=1 SV=2","G","Carbohydrate transport and metabolism","xyloglucan endotransglucosylase/hydrolase 24 [Arabidopsis thaliana] "]
["c16814.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Mitochondrial ATPase expression","Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g17525 PE=2 SV=2","S","Function unknown","hypothetical protein GOBAR_AA29137 [Gossypium barbadense]"]
["c45391.graph_c0","[H]","Coenzyme transport and metabolism ","Cellular Component: cytoplasm (GO:0005737);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","--","--","Methyltransferase domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105779468 [Gossypium raimondii] "]
["c31030.graph_c0","[T]","Signal transduction mechanisms ","Biological Process: phosphorelay signal transduction system (GO:0000160);; Cellular Component: intracellular (GO:0005622);; ","K14492|3.26146e-88|tcc:TCM_045246|K14492 two-component response regulator ARR-A family | (RefSeq) Two-component response regulator ARR8","[K]","Transcription ","Response regulator receiver domain","Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 GN=RR9 PE=2 SV=2","K","Transcription","PREDICTED: two-component response regulator ORR10 [Gossypium arboreum]"]
["c5680.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC101302375 [Fragaria vesca subsp. vesca]"]
["c35020.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","LOW QUALITY PROTEIN: reticulon-like protein B5 [Herrania umbratica]"]
["c83697.graph_c0","--","--","--","--","--","--","Innexin","--","--","--","--"]
["c45821.graph_c2","[C]","Energy production and conversion ","Molecular Function: aldehyde dehydrogenase (NAD) activity (GO:0004029);; Molecular Function: succinate-semialdehyde dehydrogenase (NAD+) activity (GO:0004777);; Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity (GO:0008886);; Molecular Function: succinate-semialdehyde dehydrogenase [NAD(P)+] activity (GO:0009013);; Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity (GO:0047100);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00131|4.85998e-139|gra:105767541|K00131 glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] | (RefSeq) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase","[C]","Energy production and conversion ","Aldehyde dehydrogenase family","NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Apium graveolens OX=4045 PE=1 SV=1","C","Energy production and conversion","NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [Gossypium arboreum]"]
["c21962.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Gossypium hirsutum]"]
["c93055.graph_c0","--","--","--","--","--","--","--","--","K","Transcription","hypothetical protein EMIHUDRAFT_436025 [Emiliania huxleyi CCMP1516] "]
["c27513.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: translational elongation (GO:0006414);; ","K03234|2.39108e-35|bpg:Bathy12g00690|K03234 elongation factor 2 | (RefSeq) elongation factor 2","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor G, domain IV","Elongation factor 2 OS=Beta vulgaris OX=161934 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c37520.graph_c0","--","--","--","--","--","--","--","Protein ABIL3 OS=Arabidopsis thaliana OX=3702 GN=ABIL3 PE=2 SV=1","--","--","PREDICTED: protein ABIL3-like isoform X2 [Gossypium hirsutum]"]
["c6089.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; ","K14291|2.27253e-15|gra:105804109|K14291 phosphorylated adapter RNA export protein | (RefSeq) uncharacterized LOC105804109","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105804109 [Gossypium raimondii] "]
["c20056.graph_c1","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal","Aspartyl protease AED3 OS=Arabidopsis thaliana OX=3702 GN=AED3 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","aspartyl protease AED3 [Herrania umbratica]"]
["c51196.graph_c0","--","--","Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);; Biological Process: regulation of ARF protein signal transduction (GO:0032012);; Biological Process: positive regulation of GTPase activity (GO:0043547);; ","K13462|2.9482e-16|gra:105799374|K13462 guanine nucleotide-exchange factor | (RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 5-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana OX=3702 GN=BIG5 PE=1 SV=2","S","Function unknown","PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X1 [Gossypium arboreum] "]
["c80654.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107898782 [Gossypium hirsutum]"]
["c20927.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","PLATZ transcription factor family protein [Parasponia andersonii]"]
["c37337.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","No apical meristem (NAM) protein","Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana OX=3702 GN=NAC098 PE=1 SV=1","--","--","hypothetical protein GOBAR_DD03148 [Gossypium barbadense]"]
["c63051.graph_c0","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10400|3.19442e-11|gra:105795266|K10400 kinesin family member 15 | (RefSeq) phragmoplast orienting kinesin 2","--","--","--","--","--","--","hypothetical protein GOBAR_DD21105 [Gossypium barbadense]"]
["c47666.graph_c0","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: plasmodesma (GO:0009506);; ","--","--","--","MULE transposase domain;; FAR1 DNA-binding domain;; SWIM zinc finger;; COMM domain","Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=2","S","Function unknown","hypothetical protein B456_004G227400 [Gossypium raimondii]"]
["c77158.graph_c0","--","--","--","K09338|5.58631e-09|gra:105799559|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein HAT14-like","--","--","--","--","K","Transcription","hypothetical protein GOBAR_AA23638 [Gossypium barbadense]"]
["c85485.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","reverse transcriptase [Corchorus capsularis]"]
["c34867.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","EamA-like transporter family","WAT1-related protein At3g53210 OS=Arabidopsis thaliana OX=3702 GN=At3g53210 PE=2 SV=1","S","Function unknown","PREDICTED: WAT1-related protein At3g53210 isoform X1 [Gossypium raimondii] "]
["c91844.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana OX=3702 GN=At2g24130 PE=3 SV=1","S","Function unknown","PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Gossypium arboreum]"]
["c35039.graph_c0","--","--","Molecular Function: chitinase activity (GO:0004568);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: response to heat (GO:0009408);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: lignin biosynthetic process (GO:0009809);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: ethylene-activated signaling pathway (GO:0009873);; Biological Process: root epidermal cell differentiation (GO:0010053);; Biological Process: response to nitrate (GO:0010167);; Biological Process: regulation of salicylic acid metabolic process (GO:0010337);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; Biological Process: cellulose biosynthetic process (GO:0030244);; Molecular Function: polysaccharide binding (GO:0030247);; Biological Process: regulation of carbohydrate biosynthetic process (GO:0043255);; Cellular Component: apoplast (GO:0048046);; ","--","[R]","General function prediction only ","Chitinase class I","Chitinase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=CTL1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: chitinase-like protein 1 [Gossypium raimondii] "]
["c92213.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","Glycosyl hydrolases family 31","--","G","Carbohydrate transport and metabolism","glycosyl hydrolase family 31 [Colletotrichum simmondsii]"]
["c43391.graph_c1","[C]","Energy production and conversion ","Molecular Function: glycerol-3-phosphate dehydrogenase [NAD+] activity (GO:0004367);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: glycerol-3-phosphate dehydrogenase complex (GO:0009331);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: glycerol-3-phosphate catabolic process (GO:0046168);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00006|0|tcc:TCM_017024|K00006 glycerol-3-phosphate dehydrogenase (NAD+) [EC:1.1.1.8] | (RefSeq) NAD-dependent glycerol-3-phosphate dehydrogenase family protein","[C]","Energy production and conversion ","NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus;; NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus","Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cuphea lanceolata OX=3930 GN=GPDH PE=2 SV=1","C","Energy production and conversion","LOW QUALITY PROTEIN: glycerol-3-phosphate dehydrogenase [NAD(+)]-like [Durio zibethinus]"]
["c73567.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","K20665|1.14077e-34|gra:105802102|K20665 jasmonoyl-isoleucine 12-hydroxylase [EC:1.14.-.-] | (RefSeq) cytochrome P450 94B3","[QI]","--","--","Cytochrome P450 94B3 OS=Arabidopsis thaliana OX=3702 GN=CYP94B3 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","cytochrome P450 94B3-like [Durio zibethinus]"]
["c76250.graph_c0","--","--","--","K14945|2.21025e-06|mus:103993511|K14945 protein quaking | (RefSeq) KH domain-containing protein At1g09660/At1g09670-like","--","--","--","--","--","--","--"]
["c49035.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K08790|1.50494e-136|tcc:TCM_020906|K08790 serine/threonine kinase 38 [EC:2.7.11.1] | (RefSeq) AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein isoform 1","[R]","General function prediction only ","Protein kinase C terminal domain;; Protein kinase domain;; Protein kinase domain;; Protein tyrosine kinase","Probable serine/threonine protein kinase IRE3 OS=Arabidopsis thaliana OX=3702 GN=IRE3 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA32661 [Gossypium barbadense]"]
["c31998.graph_c0","--","--","--","--","[K]","Transcription ","Eukaryotic elongation factor 1 beta central acidic region","--","J","Translation, ribosomal structure and biogenesis","--"]
["c39326.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Plant protein of unknown function;; Plant protein of unknown function","UPF0481 protein At3g47200 OS=Arabidopsis thaliana OX=3702 GN=At3g47200 PE=2 SV=1","S","Function unknown","PREDICTED: UPF0481 protein At3g47200-like [Gossypium hirsutum]"]
["c53690.graph_c0","--","--","--","K18732|3.61334e-16|gra:105799891|K18732 SAP domain-containing ribonucleoprotein | (RefSeq) protein MODIFIER OF SNC1 11-like","--","--","--","--","--","--","PREDICTED: protein MODIFIER OF SNC1 11-like [Gossypium raimondii] "]
["c80129.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: plant-type cell wall biogenesis (GO:0009832);; Biological Process: cellulose biosynthetic process (GO:0030244);; Biological Process: UDP-L-arabinose metabolic process (GO:0033356);; Molecular Function: UDP-arabinopyranose mutase activity (GO:0052691);; ","K13379|7.34996e-46|sind:105167526|K13379 reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] | (RefSeq) alpha-1,4-glucan-protein synthase [UDP-forming] 1-like","--","--","Reversibly glycosylated polypeptide","UDP-arabinopyranose mutase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=UAM1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","putative reversibly glycosylated polypeptide, 3&apos;-partial, partial [Oryza sativa Japonica Group]"]
["c35589.graph_c0","--","--","--","K15361|3.95957e-37|tcc:TCM_026436|K15361 WD repeat-containing protein 48 | (RefSeq) Transducin/WD40 repeat-like superfamily protein isoform 1","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: WD repeat-containing protein 48 [Theobroma cacao]"]
["c44924.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","[K]","Transcription ","Myb/SANT-like DNA-binding domain","Trihelix transcription factor PTL OS=Arabidopsis thaliana OX=3702 GN=PTL PE=2 SV=1","K","Transcription","trihelix transcription factor PTL-like [Durio zibethinus]"]
["c9709.graph_c0","--","--","--","--","--","--","Seed maturation protein","Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana OX=3702 GN=RAB28 PE=1 SV=1","S","Function unknown","late embryogenesis abundant protein D-34-like [Durio zibethinus]"]
["c30002.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: acireductone dioxygenase [iron(II)-requiring] activity (GO:0010309);; Biological Process: L-methionine salvage from methylthioadenosine (GO:0019509);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08967|1.32327e-71|gra:105800544|K08967 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] | (RefSeq) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1","[S]","Function unknown ","ARD/ARD' family","1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04070 PE=3 SV=1","S","Function unknown","1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Durio zibethinus]"]
["c47707.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107899935 [Gossypium hirsutum]"]
["c45112.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ligase activity (GO:0016874);; ","--","--","--","Protein of unknown function (DUF760);; Calcineurin-like phosphoesterase","UV-B-induced protein At3g17800, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g17800 PE=2 SV=1","S","Function unknown","hypothetical protein CCACVL1_05060 [Corchorus capsularis]"]
["c9093.graph_c0","--","--","--","--","--","--","Alginate lyase","Citrate-binding protein OS=Hevea brasiliensis OX=3981 GN=CBP PE=1 SV=1","S","Function unknown","citrate-binding protein-like [Durio zibethinus]"]
["c25097.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; Biological Process: nucleoside metabolic process (GO:0009116);; ","--","--","--","Phosphorylase superfamily","Bark storage protein A OS=Populus deltoides OX=3696 GN=BSPA PE=2 SV=1","F","Nucleotide transport and metabolism","Phosphorylase superfamily protein [Theobroma cacao]"]
["c41337.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based process (GO:0007017);; ","K07375|2.67547e-147|cre:CHLREDRAFT_129868|K07375 tubulin beta | (RefSeq) TUB2; beta tubulin 2","[Z]","Cytoskeleton ","Tubulin/FtsZ family, GTPase domain","Tubulin beta-1 chain OS=Cyanophora paradoxa OX=2762 GN=TUBB1 PE=2 SV=1","Z","Cytoskeleton","RecName: Full=Tubulin beta-1 chain; AltName: Full=Beta-1-tubulin "]
["c46603.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plastid chromosome (GO:0009508);; Cellular Component: chloroplast stroma (GO:0009570);; ","--","--","--","--","Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 OS=Arabidopsis thaliana OX=3702 GN=PTAC10 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105786487 [Gossypium raimondii] "]
["c59116.graph_c0","[X]","Mobilome: prophages, transposons","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","polyprotein, partial [Ananas comosus]"]
["c41852.graph_c0","--","--","Biological Process: DNA recombination (GO:0006310);; Biological Process: cellular response to DNA damage stimulus (GO:0006974);; Biological Process: meiosis I (GO:0007127);; ","K10867|1.10655e-80|gra:105763133|K10867 nijmegen breakage syndrome protein 1 | (RefSeq) nijmegen breakage syndrome 1 protein","--","--","FHA domain","Nijmegen breakage syndrome 1 protein OS=Arabidopsis thaliana OX=3702 GN=NBS1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: nijmegen breakage syndrome 1 protein isoform X2 [Gossypium arboreum]"]
["c44522.graph_c1","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-H2 zinc finger domain;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; RING-like zinc finger;; RING-type zinc-finger;; Anaphase-promoting complex subunit 11 RING-H2 finger","E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X2 [Theobroma cacao]"]
["c38190.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: CTP synthase activity (GO:0003883);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Biological Process: glutamine metabolic process (GO:0006541);; Biological Process: 'de novo' CTP biosynthetic process (GO:0044210);; ","K01937|6.63786e-67|gra:105783007|K01937 CTP synthase [EC:6.3.4.2] | (RefSeq) CTP synthase-like","[F]","Nucleotide transport and metabolism ","Glutamine amidotransferase class-I","--","F","Nucleotide transport and metabolism","PREDICTED: CTP synthase-like [Gossypium arboreum] "]
["c39520.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","[K]","Transcription ","GATA zinc finger","GATA transcription factor 5 OS=Arabidopsis thaliana OX=3702 GN=GATA5 PE=2 SV=1","K","Transcription","GATA transcription factor 5-like [Herrania umbratica]"]
["c71720.graph_c0","--","--","--","--","--","--","--","--","--","--","cyclin-dependent kinase inhibitor 3 isoform X2 [Durio zibethinus]"]
["c47563.graph_c0","[R]","General function prediction only ","--","--","[R]","General function prediction only ","Photosynthesis system II assembly factor YCF48;; Sortilin, neurotensin receptor 3,","Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF136 PE=1 SV=1","S","Function unknown","hypothetical protein COLO4_19602 [Corchorus olitorius]"]
["c43070.graph_c0","--","--","Biological Process: pollen tube growth (GO:0009860);; Cellular Component: apical plasma membrane (GO:0016324);; ","--","--","--","P21-Rho-binding domain","CRIB domain-containing protein RIC5 OS=Arabidopsis thaliana OX=3702 GN=RIC5 PE=1 SV=1","S","Function unknown","PREDICTED: CRIB domain-containing protein RIC7 [Gossypium arboreum]"]
["c26786.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain","Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A5 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA18693 [Gossypium barbadense]"]
["c28121.graph_c2","--","--","--","--","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107903494 isoform X3 [Gossypium hirsutum]"]
["c24431.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","Sugar (and other) transporter","Probable polyol transporter 6 OS=Arabidopsis thaliana OX=3702 GN=PLT6 PE=2 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: probable polyol transporter 3 [Gossypium hirsutum]"]
["c18285.graph_c0","--","--","--","--","[C]","Energy production and conversion ","Mitochondrial ATP synthase B chain precursor (ATP-synt_B)","--","I","Lipid transport and metabolism","--"]
["c5585.graph_c0","--","--","--","K10712|1.72516e-07|tcc:TCM_025853|K10712 cysteamine dioxygenase [EC:1.13.11.19] | (RefSeq) Uncharacterized protein isoform 1","--","--","--","--","--","--","plant cysteine oxidase 2-like [Durio zibethinus] "]
["c65645.graph_c0","[K]","Transcription ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies)","Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana OX=3702 GN=At4g36180 PE=1 SV=1","S","Function unknown","probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Herrania umbratica]"]
["c73676.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Gossypium hirsutum]"]
["c48679.graph_c1","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108464223 isoform X2 [Gossypium arboreum]"]
["c365.graph_c0","--","--","--","--","--","--","Cleavage site for pathogenic type III effector avirulence factor Avr","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105799355 [Gossypium raimondii] "]
["c24966.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","--","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S18","30S ribosomal protein S18, chloroplastic OS=Chlorokybus atmophyticus OX=3144 GN=rps18 PE=3 SV=2","J","Translation, ribosomal structure and biogenesis","PREDICTED: uncharacterized protein LOC105782074 [Gossypium raimondii] "]
["c36037.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105790271 [Gossypium raimondii] "]
["c25194.graph_c0","--","--","--","--","--","--","--","--","--","--","Phosphoglycolate phosphatase [Gossypium arboreum]"]
["c57228.graph_c0","--","--","Molecular Function: ceramidase activity (GO:0017040);; ","K12349|1.34302e-40|tcc:TCM_041695|K12349 neutral ceramidase [EC:3.5.1.23] | (RefSeq) Neutral/alkaline non-lysosomal ceramidase isoform 1","[T]","Signal transduction mechanisms ","Neutral/alkaline non-lysosomal ceramidase, N-terminal","Neutral ceramidase 1 OS=Arabidopsis thaliana OX=3702 GN=NCER1 PE=2 SV=1","S","Function unknown","Neutral/alkaline non-lysosomal ceramidase isoform 5 [Theobroma cacao]"]
["c44018.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108469606 isoform X2 [Gossypium arboreum] "]
["c52112.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107911456 [Gossypium hirsutum] "]
["c18653.graph_c0","--","--","Biological Process: negative regulation of flavonoid biosynthetic process (GO:0009964);; Molecular Function: anthocyanidin reductase activity (GO:0033729);; Molecular Function: coenzyme binding (GO:0050662);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08695|7.68757e-19|gra:105768219|K08695 anthocyanidin reductase [EC:1.3.1.77] | (RefSeq) anthocyanidin reductase","[V]","Defense mechanisms ","--","Anthocyanidin reductase ((2S)-flavan-3-ol-forming) OS=Vitis vinifera OX=29760 GN=ANR PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein B456_009G175500 [Gossypium raimondii]"]
["c75463.graph_c0","--","--","Molecular Function: oxidoreductase activity (GO:0016491);; ","K09832|2.01551e-33|tcc:TCM_029501|K09832 sterol 22-desaturase [EC:1.14.19.41] | (RefSeq) Cytochrome P450, family 710, subfamily A, polypeptide 1","[QI]","--","--","Cytochrome P450 710A1 OS=Arabidopsis thaliana OX=3702 GN=CYP710A1 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: cytochrome P450 710A1-like [Gossypium hirsutum]"]
["c33953.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","L","Replication, recombination and repair","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Apostasia shenzhenica]"]
["c43405.graph_c0","--","--","Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[GE]","--","Triose-phosphate Transporter family;; UAA transporter family;; EamA-like transporter family","Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana OX=3702 GN=At5g05820 PE=2 SV=1","S","Function unknown","PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Gossypium arboreum]"]
["c37258.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF3783)","--","S","Function unknown","hypothetical protein GOBAR_AA38763 [Gossypium barbadense]"]
["c4503.graph_c0","--","--","Biological Process: regulation of lipid kinase activity (GO:0043550);; Cellular Component: PAS complex (GO:0070772);; ","K15305|1.07658e-14|tcc:TCM_011046|K15305 vacuole morphology and inheritance protein 14 | (RefSeq) ARM repeat superfamily protein isoform 1","[S]","Function unknown ","--","Protein VAC14 homolog OS=Arabidopsis thaliana OX=3702 GN=VAC14 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: protein VAC14 homolog [Theobroma cacao] "]
["c44860.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; ","K01626|0|gra:105800289|K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] | (RefSeq) phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like","--","--","Class-II DAHP synthetase family;; Class-II DAHP synthetase family","Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum OX=4113 GN=SHKA PE=1 SV=2","E","Amino acid transport and metabolism","PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Gossypium hirsutum]"]
["c65937.graph_c0","--","--","--","--","[V]","Defense mechanisms ","--","--","S","Function unknown","PREDICTED: bax inhibitor 1-like [Juglans regia]"]
["c16250.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; ","K04565|1.81636e-15|tcc:TCM_025950|K04565 superoxide dismutase, Cu-Zn family [EC:1.15.1.1] | (RefSeq) Copper/zinc superoxide dismutase 1","--","--","Late nodulin protein","--","--","--","Copper/zinc superoxide dismutase 1 [Theobroma cacao]"]
["c27855.graph_c0","--","--","Molecular Function: glycogen (starch) synthase activity (GO:0004373);; Molecular Function: starch binding (GO:2001070);; ","--","--","--","--","Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum OX=4113 GN=SS3 PE=1 SV=1","G","Carbohydrate transport and metabolism","starch synthase 3, chloroplastic/amyloplastic-like isoform X2 [Durio zibethinus]"]
["c27251.graph_c1","[E]","Amino acid transport and metabolism ","--","K00261|1.361e-21|smo:SELMODRAFT_142951|K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] | (RefSeq) hypothetical protein","[E]","Amino acid transport and metabolism ","Glutamate/Leucine/Phenylalanine/Valine dehydrogenase","--","E","Amino acid transport and metabolism","glutamate dehydrogenase, NAD(P)+ [Catenaria anguillulae PL171] "]
["c51070.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxidation-reduction process (GO:0055114);; ","K09840|0|gra:105778279|K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] | (RefSeq) 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Retinal pigment epithelial membrane protein","Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NCED5 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Gossypium raimondii]"]
["c24429.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|0|tcc:TCM_020131|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) Major facilitator superfamily protein isoform 1","[E]","Amino acid transport and metabolism ","POT family;; POT family","Protein NRT1/ PTR FAMILY 3.1 OS=Arabidopsis thaliana OX=3702 GN=NPF3.1 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Gossypium arboreum]"]
["c42010.graph_c0","[R]","General function prediction only ","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: dephosphorylation (GO:0016311);; ","--","--","--","HAD superfamily, subfamily IIIB (Acid phosphatase)","Acid phosphatase 1 OS=Solanum lycopersicum OX=4081 GN=APS1 PE=2 SV=1","S","Function unknown","PREDICTED: acid phosphatase 1 [Theobroma cacao]"]
["c19544.graph_c0","--","--","--","--","--","--","--","--","--","--","ARID/BRIGHT DNA-binding domain-containing protein isoform 4, partial [Theobroma cacao]"]
["c78898.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","--","--","--","--","hypothetical protein F511_25191 [Dorcoceras hygrometricum]"]
["c44833.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: signal transduction (GO:0007165);; ","K12761|0|gra:105800570|K12761 carbon catabolite-derepressing protein kinase [EC:2.7.11.1] | (RefSeq) CBL-interacting serine/threonine-protein kinase 7-like","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; NAF domain;; Kinase-like","CBL-interacting serine/threonine-protein kinase 7 OS=Arabidopsis thaliana OX=3702 GN=CIPK7 PE=1 SV=1","T","Signal transduction mechanisms","CBL-interacting serine/threonine-protein kinase 7-like [Durio zibethinus]"]
["c24731.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: putative disease resistance protein RGA3 [Gossypium raimondii]"]
["c51843.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108486975 [Gossypium arboreum]"]
["c48702.graph_c3","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105785651 [Gossypium raimondii] "]
["c56133.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","K09250|3.43548e-19|osa:4334596|K09250 cellular nucleic acid-binding protein | (RefSeq) zinc finger protein GIS2","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc knuckle;; Zinc knuckle;; GAG-polyprotein viral zinc-finger;; Zinc knuckle","Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1","OU","--","cellular nucleic acid-binding protein [Mortierella verticillata NRRL 6337]"]
["c29166.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105803896 isoform X1 [Gossypium raimondii] "]
["c11389.graph_c1","--","--","Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Fasciclin domain","Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: fasciclin-like arabinogalactan protein 2 [Gossypium raimondii] "]
["c9918.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; Biological Process: cell wall pectin metabolic process (GO:0052546);; ","--","--","--","--","Probable methyltransferase PMT13 OS=Arabidopsis thaliana OX=3702 GN=At4g00740 PE=2 SV=1","S","Function unknown","hypothetical protein B456_007G095900 [Gossypium raimondii]"]
["c35859.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: zinc ion binding (GO:0008270);; ","K10406|3.81909e-20|pmum:103319103|K10406 kinesin family member C2/C3 | (RefSeq) kinesin KP1","--","--","--","--","Z","Cytoskeleton","hypothetical protein B456_002G103400 [Gossypium raimondii]"]
["c88466.graph_c0","--","--","--","--","[K]","Transcription ","--","Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana OX=3702 GN=At4g19190 PE=2 SV=1","S","Function unknown","hypothetical protein GUITHDRAFT_112467 [Guillardia theta CCMP2712] "]
["c2537.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: glucose-6-phosphate isomerase activity (GO:0004347);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolytic process (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; ","K01810|2.57462e-99|gsl:Gasu_55050|K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] | (RefSeq) glucose-6-phosphate isomerase","[G]","Carbohydrate transport and metabolism ","Phosphoglucose isomerase","Glucose-6-phosphate isomerase, cytosolic 1 OS=Clarkia franciscana OX=49755 GN=PGIC1 PE=3 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein BSLG_04172 [Batrachochytrium salamandrivorans]"]
["c21393.graph_c0","--","--","Cellular Component: intracellular part (GO:0044424);; ","--","[DZ]","--","Translationally controlled tumour protein","Translationally-controlled tumor protein homolog OS=Zea mays OX=4577 GN=TCTP PE=2 SV=1","S","Function unknown","hypothetical protein PHYBLDRAFT_131007 [Phycomyces blakesleeanus NRRL 1555(-)] "]
["c45913.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: integrin-mediated signaling pathway (GO:0007229);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain;; Protein tyrosine kinase","Integrin-linked protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=ILK1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase TNNI3K-like [Pyrus x bretschneideri]"]
["c9866.graph_c0","[S]","Function unknown ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Uncharacterized protein conserved in bacteria (DUF2062)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107959560 [Gossypium hirsutum] "]
["c30343.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: O-acetyltransferase activity (GO:0016413);; Biological Process: response to freezing (GO:0050826);; Biological Process: cell wall organization or biogenesis (GO:0071554);; ","--","--","--","GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p;; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p","Protein ESKIMO 1 OS=Arabidopsis thaliana OX=3702 GN=ESK1 PE=1 SV=1","S","Function unknown","PREDICTED: protein trichome birefringence-like 28 isoform X3 [Gossypium raimondii]"]
["c83709.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105761994 [Gossypium raimondii]"]
["c24754.graph_c0","--","--","Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616);; Biological Process: valine catabolic process (GO:0006574);; Molecular Function: 3-hydroxyisobutyrate dehydrogenase activity (GO:0008442);; Molecular Function: NAD binding (GO:0051287);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00020|3.38833e-22|gra:105793915|K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] | (RefSeq) probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial","[R]","General function prediction only ","--","Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g20930 PE=2 SV=3","I","Lipid transport and metabolism","hypothetical protein B456_005G119700 [Gossypium raimondii]"]
["c38979.graph_c0","--","--","Cellular Component: Golgi membrane (GO:0000139);; Molecular Function: structural molecule activity (GO:0005198);; Biological Process: intracellular protein transport (GO:0006886);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: COPI vesicle coat (GO:0030126);; ","K05236|4.68682e-53|gra:105795343|K05236 coatomer subunit alpha | (RefSeq) coatomer subunit alpha-1-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Coatomer WD associated region","Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1","S","Function unknown","PREDICTED: coatomer subunit alpha-1-like [Gossypium hirsutum]"]
["c33982.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K08505|2.75942e-71|tcc:TCM_001016|K08505 protein transport protein SFT1 | (RefSeq) Target SNARE coiled-coil domain protein","[KR]","--","--","Bet1-like protein At4g14600 OS=Arabidopsis thaliana OX=3702 GN=At4g14600 PE=2 SV=1","S","Function unknown","PREDICTED: bet1-like protein At4g14600 [Gossypium hirsutum]"]
["c37389.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","[S]","Function unknown ","CG-1 domain","Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana OX=3702 GN=CAMTA1 PE=1 SV=2","K","Transcription","Calmodulin-binding transcription activator 2 -like protein [Gossypium arboreum]"]
["c79969.graph_c0","--","--","--","--","--","--","C1 domain","--","--","--","Zinc finger, PHD-type [Corchorus olitorius]"]
["c16625.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC110422207 isoform X5 [Herrania umbratica]"]
["c24928.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105772016 [Gossypium raimondii]"]
["c19673.graph_c0","--","--","Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435);; Molecular Function: signal transducer activity (GO:0004871);; Cellular Component: intracellular (GO:0005622);; Biological Process: lipid catabolic process (GO:0016042);; Biological Process: intracellular signal transduction (GO:0035556);; ","K05857|3.16369e-40|gra:105780353|K05857 phosphatidylinositol phospholipase C, delta [EC:3.1.4.11] | (RefSeq) phosphoinositide phospholipase C 2-like","[T]","Signal transduction mechanisms ","Phosphoinositide-specific phospholipase C, efhand-like","Phosphoinositide phospholipase C 2 OS=Arabidopsis thaliana OX=3702 GN=PLC2 PE=1 SV=1","S","Function unknown","PREDICTED: phosphoinositide phospholipase C 2 [Theobroma cacao]"]
["c54543.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: ligase activity (GO:0016874);; ","--","--","--","Zinc finger, C3HC4 type (RING finger)","Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana OX=3702 GN=RF298 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD07836 [Gossypium barbadense]"]
["c21704.graph_c0","--","--","Molecular Function: calmodulin binding (GO:0005516);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response (GO:0006952);; Biological Process: cell death (GO:0008219);; Biological Process: response to biotic stimulus (GO:0009607);; Cellular Component: integral component of membrane (GO:0016021);; ","K08472|2.2921e-49|aly:ARALYDRAFT_473744|K08472 mlo protein | (RefSeq) hypothetical protein","--","--","Mlo family","MLO-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=MLO9 PE=2 SV=2","D","Cell cycle control, cell division, chromosome partitioning","MLO-like protein 9 [Durio zibethinus]"]
["c49667.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","--","K12875|0|gra:105784983|K12875 apoptotic chromatin condensation inducer in the nucleus | (RefSeq) apoptotic chromatin condensation inducer in the nucleus-like","[B]","Chromatin structure and dynamics ","RNSP1-SAP18 binding (RSB) motif;; SAP domain","--","S","Function unknown","hypothetical protein GOBAR_AA33105 [Gossypium barbadense]"]
["c16976.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; ","K17065|1.07468e-27|mdm:103445010|K17065 dynamin 1-like protein [EC:3.6.5.5] | (RefSeq) dynamin-related protein 3A","[UR]","--","--","Dynamin-related protein 3B OS=Arabidopsis thaliana OX=3702 GN=DRP3B PE=1 SV=2","S","Function unknown","hypothetical protein COLO4_32409 [Corchorus olitorius]"]
["c50423.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105800313 [Gossypium raimondii] "]
["c14324.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: arginine catabolic process (GO:0006527);; Biological Process: spermidine biosynthetic process (GO:0008295);; Molecular Function: arginine decarboxylase activity (GO:0008792);; Biological Process: putrescine biosynthetic process from arginine (GO:0033388);; ","K01583|4.57868e-42|fve:101293515|K01583 arginine decarboxylase [EC:4.1.1.19] | (RefSeq) arginine decarboxylase-like","--","--","--","Arginine decarboxylase OS=Glycine max OX=3847 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: arginine decarboxylase-like [Fragaria vesca subsp. vesca]"]
["c48085.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; ","K12858|0|gra:105796429|K12858 ATP-dependent RNA helicase DDX23/PRP28 [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 21-like","[A]","RNA processing and modification ","DEAD/DEAH box helicase;; Helicase conserved C-terminal domain","DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana OX=3702 GN=RH21 PE=2 SV=1","A","RNA processing and modification","PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Gossypium hirsutum]"]
["c50450.graph_c0","--","--","--","--","--","--","PB1 domain","Protein NLP1 OS=Arabidopsis thaliana OX=3702 GN=NLP1 PE=2 SV=1","S","Function unknown","Phox/Bem1p [Corchorus olitorius]"]
["c78536.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC108484814 [Gossypium arboreum]"]
["c41116.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc finger, C3HC4 type (RING finger);; Ring finger domain;; RING-type zinc-finger;; Zinc finger, C3HC4 type (RING finger);; zinc-RING finger domain;; Zinc finger, C3HC4 type (RING finger);; zinc finger of C3HC4-type, RING","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Gossypium arboreum]"]
["c51336.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|0|gra:105778376|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 29","--","--","Peroxidase","Peroxidase 29 OS=Arabidopsis thaliana OX=3702 GN=PER29 PE=2 SV=2","I","Lipid transport and metabolism","PREDICTED: peroxidase 29 [Gossypium hirsutum]"]
["c35286.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Biological Process: protein folding (GO:0006457);; Biological Process: response to stress (GO:0006950);; Molecular Function: unfolded protein binding (GO:0051082);; ","K04079|1.38584e-105|gra:105782632|K04079 molecular chaperone HtpG | (RefSeq) heat shock cognate protein 80-like","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp90 protein","Heat shock protein 81-1 OS=Oryza sativa subsp. japonica OX=39947 GN=HSP81-1 PE=3 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD04830 [Gossypium barbadense]"]
["c22995.graph_c0","--","--","--","--","[R]","General function prediction only ","Tissue inhibitor of metalloproteinase;; UNC-6/NTR/C345C module","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c74689.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","K01193|1.76201e-16|fve:101304277|K01193 beta-fructofuranosidase [EC:3.2.1.26] | (RefSeq) beta-fructofuranosidase, insoluble isoenzyme CWINV1-like","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 32 N-terminal domain","Beta-fructofuranosidase, insoluble isoenzyme CWINV1 OS=Arabidopsis thaliana OX=3702 GN=CWINV1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: beta-fructofuranosidase, insoluble isoenzyme CWINV1-like [Fragaria vesca subsp. vesca]"]
["c84111.graph_c0","--","--","--","K06058|8.26864e-08|ppp:PHYPADRAFT_164419|K06058 deltex [EC:2.3.2.27] | (RefSeq) hypothetical protein","--","--","RING-type zinc-finger;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger)","--","O","Posttranslational modification, protein turnover, chaperones","predicted protein [Physcomitrella patens] "]
["c68613.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp20/alpha crystallin family","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c52008.graph_c0","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase","Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 OS=Arabidopsis thaliana OX=3702 GN=At2g19230 PE=3 SV=3","T","Signal transduction mechanisms","probable LRR receptor-like serine/threonine-protein kinase At2g28960 isoform X2 [Durio zibethinus]"]
["c30233.graph_c0","--","--","Molecular Function: chromatin binding (GO:0003682);; ","--","--","--","SAWADEE domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107912463 isoform X2 [Gossypium hirsutum]"]
["c70481.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","--","--","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF061-like [Gossypium hirsutum]"]
["c36054.graph_c0","--","--","Cellular Component: nucleolus (GO:0005730);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: plant-type cell wall organization (GO:0009664);; Biological Process: unidimensional cell growth (GO:0009826);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: protein N-linked glycosylation via asparagine (GO:0018279);; ","K12670|0|tcc:TCM_000454|K12670 oligosaccharyltransferase complex subunit beta | (RefSeq) Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein isoform 1","[O]","Posttranslational modification, protein turnover, chaperones ","Oligosaccharyltransferase 48 kDa subunit beta","Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Arabidopsis thaliana OX=3702 GN=OST48 PE=2 SV=1","S","Function unknown","Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein isoform 2 [Theobroma cacao]"]
["c93105.graph_c0","--","--","--","--","--","--","--","--","--","--","putative ubiquitin ligase subunit [Diaporthe ampelina]"]
["c88894.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","--"]
["c93163.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","K12373|5.73186e-59|fve:101302591|K12373 hexosaminidase [EC:3.2.1.52] | (RefSeq) beta-hexosaminidase 1","[G]","Carbohydrate transport and metabolism ","beta-acetyl hexosaminidase like","Beta-hexosaminidase 1 OS=Arabidopsis thaliana OX=3702 GN=HEXO1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: beta-hexosaminidase 1 [Fragaria vesca subsp. vesca]"]
["c89744.graph_c0","--","--","--","--","[D]","Cell cycle control, cell division, chromosome partitioning ","Piwi domain","--","J","Translation, ribosomal structure and biogenesis","--"]
["c84662.graph_c0","--","--","--","--","[KT]","--","STAT protein, DNA binding domain","--","K","Transcription","--"]
["c38942.graph_c1","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain","Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1","S","Function unknown","hypothetical protein B456_009G384100 [Gossypium raimondii]"]
["c49976.graph_c0","[X]","Mobilome: prophages, transposons","Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; ","--","[R]","General function prediction only ","Integrase core domain;; gag-polypeptide of LTR copia-type;; Retrotransposon gag protein;; Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis]"]
["c47727.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Twist-related 1 [Gossypium arboreum]"]
["c86944.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein PV05_06884 [Exophiala xenobiotica] "]
["c44937.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: response to abscisic acid (GO:0009737);; Molecular Function: metal ion binding (GO:0046872);; ","K14497|1.69126e-39|gra:105765596|K14497 protein phosphatase 2C [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 75","[T]","Signal transduction mechanisms ","--","Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana OX=3702 GN=AHG1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 75 [Gossypium raimondii] "]
["c20952.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana OX=3702 GN=At4g34480 PE=1 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_AA25701 [Gossypium barbadense]"]
["c9665.graph_c0","--","--","--","K19042|9.51042e-37|gra:105787133|K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase BOI-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG1 PE=1 SV=1","S","Function unknown","PREDICTED: E3 ubiquitin-protein ligase BOI-like [Gossypium hirsutum]"]
["c87943.graph_c0","--","--","--","--","--","--","Protein of unknown function, DUF573","STOREKEEPER protein OS=Solanum tuberosum OX=4113 GN=STK PE=2 SV=1","K","Transcription","hypothetical protein GOBAR_DD20265 [Gossypium barbadense]"]
["c40464.graph_c0","--","--","Biological Process: cellular metabolic process (GO:0044237);; ","--","[R]","General function prediction only ","Retrotransposon gag protein","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","S","Function unknown","hypothetical protein VITISV_027440 [Vitis vinifera]"]
["c33850.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: cell surface receptor signaling pathway (GO:0007166);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: polysaccharide binding (GO:0030247);; ","--","--","--","Protein tyrosine kinase;; Protein kinase domain;; Wall-associated receptor kinase galacturonan-binding;; Wall-associated kinase","Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana OX=3702 GN=WAKL2 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: wall-associated receptor kinase-like 22 [Gossypium raimondii]"]
["c43464.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; ","--","[S]","Function unknown ","Protein of unknown function (DUF1640)","--","S","Function unknown","protein FMP32, mitochondrial-like isoform X1 [Durio zibethinus]"]
["c36433.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Frigida-like protein;; Frigida-like protein;; Frigida-like protein;; Frigida-like protein","FRIGIDA-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=FRL3 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD13554 [Gossypium barbadense]"]
["c43134.graph_c0","[H]","Coenzyme transport and metabolism ","Biological Process: riboflavin biosynthetic process (GO:0009231);; Cellular Component: riboflavin synthase complex (GO:0009349);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: transferase activity (GO:0016740);; ","K00794|1.46663e-89|gra:105801802|K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] | (RefSeq) 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like","[H]","Coenzyme transport and metabolism ","6,7-dimethyl-8-ribityllumazine synthase;; 6,7-dimethyl-8-ribityllumazine synthase","6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44050 PE=2 SV=1","H","Coenzyme transport and metabolism","PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like isoform X2 [Gossypium arboreum] "]
["c24539.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|6.63525e-48|tcc:TCM_042012|K09422 myb proto-oncogene protein, plant | (RefSeq) Myb domain protein 36, putative","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1","K","Transcription","SANT/Myb domain [Macleaya cordata]"]
["c35731.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell growth (GO:0016049);; Biological Process: protein sumoylation (GO:0016925);; Molecular Function: SUMO transferase activity (GO:0019789);; Biological Process: cellular response to extracellular stimulus (GO:0031668);; ","--","[K]","Transcription ","--","E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana OX=3702 GN=SIZ1 PE=1 SV=2","S","Function unknown","PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform X2 [Gossypium arboreum]"]
["c29674.graph_c0","--","--","--","--","--","--","VQ motif","Protein HAIKU1 OS=Arabidopsis thaliana OX=3702 GN=IKU1 PE=1 SV=1","S","Function unknown","protein HAIKU1-like [Herrania umbratica]"]
["c80293.graph_c0","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","K04392|5.2162e-38|csv:101218591|K04392 Ras-related C3 botulinum toxin substrate 1 | (RefSeq) rac-like GTP-binding protein RAC13","[R]","General function prediction only ","Ras family","Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC7 PE=2 SV=1","S","Function unknown","rac protein [Rhizopus delemar RA 99-880] "]
["c48511.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: ATP-dependent microtubule motor activity, plus-end-directed (GO:0008574);; Biological Process: cellulose microfibril organization (GO:0010215);; Cellular Component: cortical microtubule (GO:0055028);; ","K10395|3.53838e-83|gra:105769262|K10395 kinesin family member 4/21/27 | (RefSeq) kinesin-like protein FRA1","[Z]","Cytoskeleton ","--","Kinesin-like protein KIN-4A OS=Gossypium hirsutum OX=3635 GN=KIN4A PE=2 SV=1","Z","Cytoskeleton","hypothetical protein B456_009G214600 [Gossypium raimondii]"]
["c37885.graph_c0","--","--","Biological Process: cell division (GO:0051301);; ","--","--","--","Zinc-finger domain of monoamine-oxidase A repressor R1;; Zinc-finger domain of monoamine-oxidase A repressor R1","--","S","Function unknown","hypothetical protein B456_007G003000 [Gossypium raimondii]"]
["c50451.graph_c0","--","--","--","--","--","--","Lateral organ boundaries (LOB) domain","LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1","S","Function unknown","LOB domain-containing protein 4 [Theobroma cacao]"]
["c35554.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K06890|3.03777e-26|gra:105796792|K06890 uncharacterized protein | (RefSeq) BI1-like protein","[T]","Signal transduction mechanisms ","--","BI1-like protein OS=Arabidopsis thaliana OX=3702 GN=LFG5 PE=2 SV=1","S","Function unknown","PREDICTED: BI1-like protein [Gossypium arboreum]"]
["c65977.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","--","Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana OX=3702 GN=At1g78530 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 [Gossypium raimondii] "]
["c9982.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular part (GO:0044424);; ","K03283|1.17128e-13|cit:102625591|K03283 heat shock 70kDa protein 1/8 | (RefSeq) heat shock 70 kDa protein 5-like","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp70 protein","Heat shock 70 kDa protein 5 OS=Arabidopsis thaliana OX=3702 GN=HSP70-5 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein CUMW_164260 [Citrus unshiu]"]
["c81230.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|2.89475e-26|tcc:TCM_029126|K09422 myb proto-oncogene protein, plant | (RefSeq) Myb domain protein 23","--","--","--","--","K","Transcription","transcription factor MYB114-like [Durio zibethinus]"]
["c33744.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; ","--","--","--","--","--","S","Function unknown","PREDICTED: phytolongin Phyl1.1 [Theobroma cacao] "]
["c22195.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_005G202100 [Gossypium raimondii]"]
["c85605.graph_c0","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","K07904|5.62932e-22|gra:105765955|K07904 Ras-related protein Rab-11A | (RefSeq) ras-related protein Rab11C-like","--","--","--","--","S","Function unknown","PREDICTED: ras-related protein Rab11C-like [Gossypium raimondii] "]
["c73582.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02910|6.21372e-29|gmx:100306335|K02910 large subunit ribosomal protein L31e | (RefSeq) uncharacterized LOC100306335","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L31e","60S ribosomal protein L31 OS=Cyanophora paradoxa OX=2762 GN=RPL31 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","RecName: Full=60S ribosomal protein L31 "]
["c39844.graph_c0","--","--","Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","non-haem dioxygenase in morphine synthesis N-terminal","--","S","Function unknown","Gibberellin 2-beta-dioxygenase 1 -like protein [Gossypium arboreum]"]
["c25442.graph_c0","--","--","Molecular Function: motor activity (GO:0003774);; Cellular Component: myosin complex (GO:0016459);; ","--","--","--","Unconventional myosin tail, actin- and lipid-binding","--","S","Function unknown","Myosin heavy chain IB [Gossypium arboreum]"]
["c40629.graph_c0","--","--","--","--","--","--","--","Protein LONGIFOLIA 1 OS=Arabidopsis thaliana OX=3702 GN=LNG1 PE=1 SV=1","S","Function unknown","PREDICTED: protein LONGIFOLIA 1-like [Gossypium hirsutum]"]
["c65963.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD00741 [Gossypium barbadense]"]
["c43180.graph_c2","--","--","--","--","--","--","--","--","--","--","hypothetical protein CICLE_v10029703mg [Citrus clementina]"]
["c46307.graph_c0","--",";; ","--","K04733|3.59232e-154|gra:105782864|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase CDL1-like","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana OX=3702 GN=ALE2 PE=1 SV=1","T","Signal transduction mechanisms","probable serine/threonine-protein kinase PBL7 [Durio zibethinus]"]
["c43190.graph_c1","--","--","Cellular Component: membrane (GO:0016020);; ","--","[S]","Function unknown ","Membrane transport protein;; Membrane transport protein","Protein PIN-LIKES 5 OS=Arabidopsis thaliana OX=3702 GN=PILS5 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107939605 [Gossypium hirsutum]"]
["c41422.graph_c0","--","--","Molecular Function: chaperone binding (GO:0051087);; ","--","[T]","Signal transduction mechanisms ","BAG domain","BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana OX=3702 GN=BAG4 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: BAG family molecular chaperone regulator 4-like [Gossypium raimondii] "]
["c89555.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana OX=3702 GN=At4g36180 PE=1 SV=1","S","Function unknown","PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium raimondii] "]
["c44082.graph_c0","[S]","Function unknown ","Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);; Biological Process: phosphatidylinositol phosphorylation (GO:0046854);; ","K00889|0|gra:105769617|K00889 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68] | (RefSeq) phosphatidylinositol 4-phosphate 5-kinase 1","[T]","Signal transduction mechanisms ","MORN repeat","Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana OX=3702 GN=PIP5K1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1-like [Gossypium arboreum] "]
["c29977.graph_c0","--","--","Molecular Function: tRNA binding (GO:0000049);; Biological Process: tRNA wobble uridine modification (GO:0002098);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: lateral root formation (GO:0010311);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; Molecular Function: sulfurtransferase activity (GO:0016783);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: protein urmylation (GO:0032447);; Biological Process: tRNA thio-modification (GO:0034227);; ","K14169|0|gra:105803625|K14169 cytoplasmic tRNA 2-thiolation protein 2 | (RefSeq) cytoplasmic tRNA 2-thiolation protein 2","[S]","Function unknown ","Cytoplasmic tRNA 2-thiolation protein 2","Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana OX=3702 GN=CTU2 PE=2 SV=3","J","Translation, ribosomal structure and biogenesis","PREDICTED: cytoplasmic tRNA 2-thiolation protein 2-like isoform X2 [Gossypium hirsutum]"]
["c37934.graph_c0","--","--","--","--","--","--","--","IQ domain-containing protein IQM2 OS=Arabidopsis thaliana OX=3702 GN=IQM2 PE=2 SV=1","S","Function unknown","IQ domain-containing protein IQM2-like [Durio zibethinus]"]
["c92945.graph_c0","--","--","--","--","--","--","--","--","K","Transcription","--"]
["c49633.graph_c0","[DPM]","Cell cycle control, cell division, chromosome partitioning ;; Inorganic ion transport and metabolism ;; Cell wall/membrane/envelope biogenesis ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05909|0|gra:105767839|K05909 laccase [EC:1.10.3.2] | (RefSeq) laccase-17-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase;; Multicopper oxidase;; Multicopper oxidase","Laccase-17 OS=Arabidopsis thaliana OX=3702 GN=LAC17 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: laccase-17-like [Gossypium raimondii]"]
["c46436.graph_c1","--","--","--","--","--","--","--","--","--","--","Serine/threonine-protein kinase tel-1 [Gossypium arboreum]"]
["c88669.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","OPT oligopeptide transporter protein","Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica OX=39947 GN=YSL14 PE=2 SV=1","S","Function unknown","OPT domain-containing protein [Cephalotus follicularis]"]
["c49185.graph_c1","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease;; Xylanase inhibitor N-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At5g10080 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: aspartic proteinase-like protein 1 isoform X2 [Gossypium arboreum]"]
["c6133.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K14803|1.13867e-51|pxb:103953103|K14803 protein phosphatase PTC2/3 [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 49","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0134200 PE=2 SV=1","T","Signal transduction mechanisms","probable protein phosphatase 2C 49 [Herrania umbratica]"]
["c23292.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108473367 [Gossypium arboreum]"]
["c37403.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18614427 [Theobroma cacao] "]
["c69957.graph_c0","--","--","Molecular Function: linoleate 13S-lipoxygenase activity (GO:0016165);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00454|1.15337e-95|vvi:104877287|K00454 lipoxygenase [EC:1.13.11.12] | (RefSeq) linoleate 13S-lipoxygenase 2-1, chloroplastic-like","--","--","Lipoxygenase","Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX2.1 PE=1 SV=1","--","--","hypothetical protein AQUCO_00900189v1 [Aquilegia coerulea]"]
["c90594.graph_c0","[VI]","Defense mechanisms ;; Lipid transport and metabolism ","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione peroxidase","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c75040.graph_c0","--","--","--","--","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana OX=3702 GN=TIF3H1 PE=1 SV=2","--","--","--"]
["c25025.graph_c0","--","--","Biological Process: cellular macromolecule metabolic process (GO:0044260);; Biological Process: nucleic acid metabolic process (GO:0090304);; ","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC105797634 [Gossypium raimondii]"]
["c28125.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: calcium ion binding (GO:0005509);; Biological Process: organelle organization (GO:0006996);; Biological Process: cellular component assembly (GO:0022607);; Cellular Component: intracellular organelle (GO:0043229);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: mitotic cytokinetic process (GO:1902410);; ","K02183|1.45261e-32|cre:CHLREDRAFT_188144|K02183 calmodulin | (RefSeq) CAM1; calmodulin","[Z]","Cytoskeleton ","EF hand;; EF-hand domain pair;; EF-hand domain;; EF-hand domain pair;; EF hand","Calmodulin OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=2","DTZ","--","EF-hand [Conidiobolus coronatus NRRL 28638]"]
["c91958.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","WD repeat-containing protein 11-like [Durio zibethinus]"]
["c17747.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Alcohol dehydrogenase GroES-like domain","Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum OX=4043 GN=ELI3 PE=2 SV=1","C","Energy production and conversion","hypothetical protein HMPREF1541_07562 [Cyphellophora europaea CBS 101466] "]
["c19831.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Molecular Function: metal ion binding (GO:0046872);; ","K10999|6.67537e-28|cam:101499537|K10999 cellulose synthase A [EC:2.4.1.12] | (RefSeq) cellulose synthase A catalytic subunit 3 [UDP-forming]","--","--","--","Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana OX=3702 GN=CESA3 PE=1 SV=2","M","Cell wall/membrane/envelope biogenesis","cellulose synthase 2 [Betula luminifera]"]
["c29259.graph_c0","--","--","Cellular Component: plasmodesma (GO:0009506);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","--","--","S","Function unknown","hypothetical protein GOBAR_AA03608 [Gossypium barbadense]"]
["c65436.graph_c0","--","--","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","2OG-Fe(II) oxygenase superfamily;; 2OG-Fe(II) oxygenase superfamily","S-norcoclaurine synthase 1 OS=Coptis japonica OX=3442 GN=NCS1 PE=1 SV=1","S","Function unknown","PREDICTED: S-norcoclaurine synthase 1-like [Gossypium arboreum] "]
["c18534.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: plastid (GO:0009536);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","EF hand","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107948432 [Gossypium hirsutum]"]
["c91915.graph_c0","--","--","Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Cellular Component: spliceosomal complex (GO:0005681);; Molecular Function: U6 snRNA binding (GO:0017070);; Molecular Function: U5 snRNA binding (GO:0030623);; ","K12856|2.34273e-39|dosa:Os06t0167000-01|K12856 pre-mRNA-processing factor 8 | (RAP-DB) Os06g0167000; Similar to predicted protein.","[A]","RNA processing and modification ","PROCN (NUC071) domain","Pre-mRNA-processing-splicing factor 8B OS=Arabidopsis thaliana OX=3702 GN=PRP8B PE=3 SV=2","A","RNA processing and modification","hypothetical protein EMIHUDRAFT_450596 [Emiliania huxleyi CCMP1516] "]
["c36491.graph_c0","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10395|2.38174e-53|gra:105769262|K10395 kinesin family member 4/21/27 | (RefSeq) kinesin-like protein FRA1","[Z]","Cytoskeleton ","Kinesin motor domain","Kinesin-like protein KIN-4A OS=Gossypium hirsutum OX=3635 GN=KIN4A PE=2 SV=1","Z","Cytoskeleton","PREDICTED: kinesin-like protein KIN-4A isoform X1 [Gossypium arboreum] "]
["c91388.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","--"]
["c47947.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","DEK C terminal domain","--","S","Function unknown","hypothetical protein B456_009G245100 [Gossypium raimondii]"]
["c27035.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD08128 [Gossypium barbadense]"]
["c36315.graph_c2","--","--","Molecular Function: binding (GO:0005488);; Biological Process: cellular metabolic process (GO:0044237);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","S","Function unknown","Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]"]
["c29001.graph_c1","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K04733|0|gra:105780897|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1","--","--","Protein kinase domain;; Protein tyrosine kinase;; Domain of unknown function (DUF4283)","G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK1 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Gossypium hirsutum]"]
["c26834.graph_c1","--","--","--","--","[R]","General function prediction only ","GNL3L/Grn1 putative GTPase","--","S","Function unknown","--"]
["c82247.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: ATP-dependent RNA helicase activity (GO:0004004);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytosol (GO:0005829);; Biological Process: rRNA processing (GO:0006364);; Biological Process: translational initiation (GO:0006413);; Biological Process: RNA splicing (GO:0008380);; Biological Process: regulation of gene expression (GO:0010468);; Biological Process: RNA secondary structure unwinding (GO:0010501);; Cellular Component: catalytic step 2 spliceosome (GO:0071013);; ","K13025|7.00714e-17|obr:102700751|K13025 ATP-dependent RNA helicase [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 2","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic initiation factor 4A-III homolog B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 SV=1","L","Replication, recombination and repair","hypothetical protein CGLO_12666 [Colletotrichum gloeosporioides Cg-14]"]
["c48561.graph_c0","--","--","--","--","[GE]","--","Triose-phosphate Transporter family;; UAA transporter family;; EamA-like transporter family","Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana OX=3702 GN=At3g11320 PE=2 SV=1","S","Function unknown","PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Gossypium raimondii] "]
["c84318.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_011G033100 [Gossypium raimondii]"]
["c49300.graph_c0","[R]","General function prediction only ","--","--","[S]","Function unknown ","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain;; Eukaryotic translation initiation factor eIF2A","WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1","S","Function unknown","PREDICTED: WD repeat-containing protein 26-like [Gossypium raimondii] "]
["c23226.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Domain of unknown function (DUF588);; Conotoxin T-superfamily","CASP-like protein 1D1 OS=Ricinus communis OX=3988 GN=RCOM_0679870 PE=2 SV=1","S","Function unknown","PREDICTED: CASP-like protein 1D1 [Gossypium raimondii] "]
["c70651.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; ","K03283|2.05002e-49|egu:105056954|K03283 heat shock 70kDa protein 1/8 | (RefSeq) heat shock cognate 70 kDa protein 2-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum OX=4081 GN=HSC-2 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein DCAR_015615 [Daucus carota subsp. sativus]"]
["c66874.graph_c0","--","--","--","--","--","--","Transcriptional activator","--","S","Function unknown","hypothetical protein CCACVL1_25713 [Corchorus capsularis]"]
["c46571.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","--","--","NAD dependent epimerase/dehydratase family;; GDP-mannose 4,6 dehydratase;; NAD(P)H-binding;; RmlD substrate binding domain;; Glucose-6-phosphate dehydrogenase, C-terminal domain","Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CSP41B PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic [Gossypium arboreum]"]
["c27375.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","K21026|2.38714e-70|gra:105768421|K21026 acetylajmaline esterase [EC:3.1.1.80] | (RefSeq) GDSL esterase/lipase At1g28580-like","--","--","--","GDSL esterase/lipase At1g28580 OS=Arabidopsis thaliana OX=3702 GN=At1g28580 PE=2 SV=1","S","Function unknown","PREDICTED: GDSL esterase/lipase At1g28580-like [Gossypium hirsutum]"]
["c18974.graph_c0","--","--","Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","--","--","C","Energy production and conversion","berberine bridge enzyme-like 18 [Cucurbita moschata]"]
["c36905.graph_c2","--","--","--","--","[T]","Signal transduction mechanisms ","Carboxylesterase family","--","I","Lipid transport and metabolism","--"]
["c55068.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: translational initiation (GO:0006413);; ","K03260|1.97533e-28|gra:105782762|K03260 translation initiation factor 4G | (RefSeq) eukaryotic translation initiation factor isoform 4G-1-like","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana OX=3702 GN=EIF(ISO)4G1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: eukaryotic translation initiation factor isoform 4G-1-like [Gossypium raimondii] "]
["c42937.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC18586334 isoform X1 [Theobroma cacao] "]
["c86228.graph_c0","--","--","Cellular Component: integral component of plasma membrane (GO:0005887);; Molecular Function: L-amino acid transmembrane transporter activity (GO:0015179);; Molecular Function: antiporter activity (GO:0015297);; Biological Process: L-alpha-amino acid transmembrane transport (GO:1902475);; ","--","[E]","Amino acid transport and metabolism ","Amino acid permease","--","E","Amino acid transport and metabolism","hypothetical protein IQ06DRAFT_325017 [Stagonospora sp. SRC1lsM3a]"]
["c46174.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","Armadillo/beta-catenin-like repeat;; Tetratricopeptide repeat","--","S","Function unknown","hypothetical protein GOBAR_AA13251 [Gossypium barbadense]"]
["c49221.graph_c0","--","--","--","K05285|9.50625e-126|gra:105768466|K05285 phosphatidylinositol glycan, class N [EC:2.7.-.-] | (RefSeq) GPI ethanolamine phosphate transferase 1","[T]","Signal transduction mechanisms ","Sulfatase;; Metalloenzyme superfamily;; Type I phosphodiesterase / nucleotide pyrophosphatase;; Phosphatidylinositolglycan class N (PIG-N);; Phosphatidylinositolglycan class N (PIG-N);; Phosphatidylinositolglycan class N (PIG-N);; Phosphatidylinositolglycan class N (PIG-N)","--","S","Function unknown","hypothetical protein B456_001G259600 [Gossypium raimondii] "]
["c20687.graph_c1","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: response to light stimulus (GO:0009416);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: flower development (GO:0009908);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cellular component organization (GO:0016043);; Molecular Function: identical protein binding (GO:0042802);; Cellular Component: cell part (GO:0044464);; Molecular Function: protein dimerization activity (GO:0046983);; Biological Process: regulation of post-embryonic development (GO:0048580);; Biological Process: anatomical structure formation involved in morphogenesis (GO:0048646);; Biological Process: phyllome development (GO:0048827);; Biological Process: cellular developmental process (GO:0048869);; Biological Process: regulation of cellular process (GO:0050794);; ","K13415|1.01043e-26|gra:105802297|K13415 protein brassinosteroid insensitive 1 [EC:2.7.10.1 2.7.11.1] | (RefSeq) protein BRASSINOSTEROID INSENSITIVE 1","--","--","Leucine rich repeat N-terminal domain","Systemin receptor SR160 OS=Solanum peruvianum OX=4082 PE=1 SV=1","S","Function unknown","PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Gossypium raimondii] "]
["c31117.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Gossypium hirsutum] "]
["c42007.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: regulation of meristem structural organization (GO:0009934);; Molecular Function: sequence-specific DNA binding (GO:0043565);; Biological Process: carpel development (GO:0048440);; ","--","[K]","Transcription ","KNOX1 domain;; KNOX2 domain;; Homeobox KN domain;; ELK domain;; Homeobox domain","Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1","K","Transcription","PREDICTED: homeobox protein SBH1-like [Gossypium hirsutum]"]
["c44672.graph_c0","[T]","Signal transduction mechanisms ","Biological Process: proteolysis (GO:0006508);; Molecular Function: serine-type peptidase activity (GO:0008236);; ","--","[R]","General function prediction only ","--","--","S","Function unknown","protein ABHD17B [Herrania umbratica] "]
["c24556.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","K20661|0|gra:105768207|K20661 cytochrome P450 family 714 subfamily A polypeptide 1 | (RefSeq) cytochrome P450 714A1-like","[QI]","--","Cytochrome P450;; Cytochrome P450","Cytochrome P450 714A1 OS=Arabidopsis thaliana OX=3702 GN=CYP714A1 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein GOBAR_AA11302 [Gossypium barbadense]"]
["c43314.graph_c0","[C]","Energy production and conversion ","Biological Process: nitric oxide biosynthetic process (GO:0006809);; Molecular Function: heme binding (GO:0020037);; Molecular Function: molybdenum ion binding (GO:0030151);; Biological Process: nitrate assimilation (GO:0042128);; Molecular Function: molybdopterin cofactor binding (GO:0043546);; Molecular Function: nitrate reductase (NADPH) activity (GO:0050464);; Biological Process: oxidation-reduction process (GO:0055114);; ","K10534|0|tcc:TCM_035019|K10534 nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] | (RefSeq) Nitrate reductase 2","[C]","Energy production and conversion ","Oxidoreductase FAD-binding domain;; Oxidoreductase NAD-binding domain;; Mo-co oxidoreductase dimerisation domain;; Cytochrome b5-like Heme/Steroid binding domain;; Oxidoreductase molybdopterin binding domain;; Mo-co oxidoreductase dimerisation domain","Nitrate reductase [NADH] OS=Cucurbita maxima OX=3661 PE=2 SV=1","CI","--","Nitrate reductase 2 [Theobroma cacao]"]
["c41593.graph_c0","[H]","Coenzyme transport and metabolism ","Cellular Component: cytosol (GO:0005829);; Biological Process: response to stress (GO:0006950);; Biological Process: thiamine biosynthetic process (GO:0009228);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: thiazole biosynthetic process (GO:0052837);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03146|0|gra:105780320|K03146 thiamine thiazole synthase | (RefSeq) thiamine thiazole synthase, chloroplastic","[R]","General function prediction only ","Thi4 family;; FAD dependent oxidoreductase;; FAD binding domain;; NAD(P)-binding Rossmann-like domain;; Pyridine nucleotide-disulphide oxidoreductase;; GMC oxidoreductase","Thiamine thiazole synthase 1, chloroplastic OS=Vitis vinifera OX=29760 GN=THI1-1 PE=3 SV=1","H","Coenzyme transport and metabolism","thiamine thiazole synthase, chloroplastic-like [Gossypium hirsutum] "]
["c77357.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","K07739|3.06251e-25|gra:105803458|K07739 elongator complex protein 3 [EC:2.3.1.48] | (RefSeq) uncharacterized LOC105803458","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_019176 [Vitis vinifera]"]
["c48260.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111289905 [Durio zibethinus]"]
["c79726.graph_c0","--","--","--","--","[W]","Extracellular structures ","von Willebrand factor type A domain;; von Willebrand factor type A domain","--","O","Posttranslational modification, protein turnover, chaperones","Collagen alpha-6(VI) chain [Auxenochlorella protothecoides] "]
["c47433.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","--","K13237|2.3954e-162|gra:105792781|K13237 peroxisomal 2,4-dienoyl-CoA reductase [EC:1.3.1.34] | (RefSeq) peroxisomal 2,4-dienoyl-CoA reductase","[R]","General function prediction only ","Enoyl-(Acyl carrier protein) reductase;; short chain dehydrogenase;; KR domain","Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=At3g12800 PE=2 SV=1","S","Function unknown","PREDICTED: peroxisomal 2,4-dienoyl-CoA reductase-like [Gossypium hirsutum]"]
["c2063.graph_c0","--","--","--","--","[R]","General function prediction only ","Aluminium activated malate transporter","Aluminum-activated malate transporter 10 OS=Arabidopsis thaliana OX=3702 GN=ALMT10 PE=3 SV=2","S","Function unknown","PREDICTED: aluminum-activated malate transporter 10-like isoform X1 [Gossypium raimondii]"]
["c70189.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c51085.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02935|2.53795e-76|gra:105795535|K02935 large subunit ribosomal protein L7/L12 | (RefSeq) 50S ribosomal protein L12, cyanelle","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L7/L12 C-terminal domain","50S ribosomal protein L12, chloroplastic OS=Guillardia theta OX=55529 GN=rpl12 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 50S ribosomal protein L12, cyanelle [Gossypium raimondii] "]
["c50152.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: repetitive proline-rich cell wall protein 1-like, partial [Gossypium arboreum]"]
["c55050.graph_c0","--","--","--","K01867|1.30283e-09|pda:103706072|K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] | (RefSeq) tryptophan--tRNA ligase, cytoplasmic-like","[J]","Translation, ribosomal structure and biogenesis ","--","Tryptophan--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g04600 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein AALP_AA5G082500 [Arabis alpina]"]
["c10268.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","[OW]","--","Putative peptidoglycan binding domain","Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana OX=3702 GN=1MMP PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein ASPWEDRAFT_472563 [Aspergillus wentii DTO 134E9]"]
["c47184.graph_c0","--","--","Molecular Function: double-stranded RNA binding (GO:0003725);; Molecular Function: copper ion binding (GO:0005507);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: production of miRNAs involved in gene silencing by miRNA (GO:0035196);; Biological Process: production of siRNA involved in chromatin silencing by small RNA (GO:0070919);; ","--","--","--","Double-stranded RNA binding motif;; Double-stranded RNA binding motif","Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=DRB2 PE=1 SV=1","S","Function unknown","PREDICTED: double-stranded RNA-binding protein 2-like isoform X2 [Gossypium raimondii]"]
["c18249.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: metal ion binding (GO:0046872);; ","K01537|6.2296e-47|gra:105790942|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) calcium-transporting ATPase 1, endoplasmic reticulum-type-like","[P]","Inorganic ion transport and metabolism ","Cation transporting ATPase, C-terminus","Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana OX=3702 GN=ECA4 PE=2 SV=2","P","Inorganic ion transport and metabolism","PREDICTED: LOW QUALITY PROTEIN: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium hirsutum]"]
["c52801.graph_c0","--","--","--","K13993|4.95021e-16|nnu:104609367|K13993 HSP20 family protein | (RefSeq) 17.1 kDa class II heat shock protein","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp20/alpha crystallin family","17.9 kDa class II heat shock protein OS=Glycine max OX=3847 GN=HSP17.9-D PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","unnamed protein product, partial [Vitis vinifera]"]
["c45417.graph_c0","[K]","Transcription ","--","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeat;; Leucine Rich repeats (2 copies)","--","S","Function unknown","hypothetical protein B456_004G109300 [Gossypium raimondii]"]
["c30533.graph_c0","--","--","--","--","--","--","--","Protein trichome birefringence-like 14 OS=Arabidopsis thaliana OX=3702 GN=TBL14 PE=2 SV=1","S","Function unknown","hypothetical protein COLO4_35785 [Corchorus olitorius]"]
["c55987.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K05863|1.2602e-12|gra:105793069|K05863 solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 | (RefSeq) ADP,ATP carrier protein 1, mitochondrial-like","[C]","Energy production and conversion ","--","ADP,ATP carrier protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=AAC2 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: ADP,ATP carrier protein 1, mitochondrial-like [Ipomoea nil]"]
["c52588.graph_c0","--","--","Molecular Function: enzyme inhibitor activity (GO:0004857);; Cellular Component: cell wall (GO:0005618);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin catabolic process (GO:0045490);; ","K01051|2.11998e-34|gra:105798744|K01051 pectinesterase [EC:3.1.1.11] | (RefSeq) pectinesterase/pectinesterase inhibitor PPE8B-like","--","--","--","Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica OX=3760 PE=2 SV=1","G","Carbohydrate transport and metabolism","PME4 [Gossypium barbadense]"]
["c37237.graph_c0","--","--","--","--","--","--","Protein of unknown function, DUF617;; SNARE domain;; Syntaxin","Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana OX=3702 GN=MIZ1 PE=1 SV=1","S","Function unknown","PREDICTED: protein MIZU-KUSSEI 1-like [Gossypium raimondii] "]
["c24826.graph_c1","[E]","Amino acid transport and metabolism ","Molecular Function: hydrolase activity (GO:0016787);; ","K13051|7.057e-134|gra:105769860|K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5] | (RefSeq) probable isoaspartyl peptidase/L-asparaginase 2","[E]","Amino acid transport and metabolism ","Asparaginase","Probable isoaspartyl peptidase/L-asparaginase 2 OS=Arabidopsis thaliana OX=3702 GN=At3g16150 PE=2 SV=2","E","Amino acid transport and metabolism","PREDICTED: probable isoaspartyl peptidase/L-asparaginase 2 [Gossypium arboreum] "]
["c70299.graph_c0","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Biological Process: terpenoid biosynthetic process (GO:0016114);; Molecular Function: (+)-delta-cadinene synthase activity (GO:0047461);; ","--","--","--","--","(+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum OX=29729 GN=CAD1-A PE=2 SV=1","S","Function unknown","PREDICTED: (+)-delta-cadinene synthase isozyme A-like [Gossypium arboreum]"]
["c78330.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02912|3.87296e-46|cre:CHLREDRAFT_191758|K02912 large subunit ribosomal protein L32e | (RefSeq) RPL32; ribosomal protein L32, component of cytosolic 80S ribosome and 60S large subunit","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L32","60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","60S ribosomal protein L32-1 [Pythium insidiosum]"]
["c95471.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal small subunit assembly (GO:0000028);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02966|5.85259e-40|mtr:MTR_3g013635|K02966 small subunit ribosomal protein S19e | (RefSeq) 40S ribosomal protein S19-1","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S19e","40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S19-1 [Medicago truncatula] "]
["c45257.graph_c1","[H]","Coenzyme transport and metabolism ","Biological Process: biosynthetic process (GO:0009058);; Molecular Function: nucleotidyltransferase activity (GO:0016779);; ","--","--","--","--","--","S","Function unknown","hypothetical protein B456_005G193400 [Gossypium raimondii]"]
["c71782.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","K03011|1.17934e-20|gra:105779841|K03011 DNA-directed RNA polymerase II subunit RPB3 | (RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like","[K]","Transcription ","--","DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1","K","Transcription","DNA-directed RNA polymerases II, IV and V subunit 3-like [Hevea brasiliensis]"]
["c60144.graph_c0","--","--","--","K06688|1.8553e-09|pxb:103938006|K06688 ubiquitin-conjugating enzyme E2 C [EC:2.3.2.23] | (RefSeq) ubiquitin-conjugating enzyme E2 20-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana OX=3702 GN=UBC20 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","ubiquitin-conjugating enzyme E2 20 [Hevea brasiliensis]"]
["c90087.graph_c0","[S]","Function unknown ","--","--","--","--","--","--","--","--","--"]
["c35518.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105762277 [Gossypium raimondii]"]
["c58074.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","RING-H2 finger protein ATL16-like [Durio zibethinus]"]
["c30957.graph_c1","--","--","--","--","[GE]","--","--","Probable sugar phosphate/phosphate translocator At5g25400 OS=Arabidopsis thaliana OX=3702 GN=At5g25400 PE=2 SV=1","S","Function unknown","hypothetical protein B456_013G215300 [Gossypium raimondii]"]
["c46320.graph_c1","--","--","Biological Process: mitochondrial fission (GO:0000266);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cell cortex (GO:0005938);; Cellular Component: cell plate (GO:0009504);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen maturation (GO:0010152);; ","--","[UR]","--","Dynamin central region;; Dynamin GTPase effector domain;; Dynamin family","Dynamin-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=DRP1C PE=1 SV=2","S","Function unknown","PREDICTED: dynamin-related protein 1C [Gossypium raimondii] "]
["c44677.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD32267 [Gossypium barbadense]"]
["c8513.graph_c0","--","--","--","K11293|5.92281e-06|tcc:TCM_041451|K11293 protein HIRA/HIR1 | (RefSeq) Histone chaperone HIRA isoform 1","--","--","--","--","--","--","--"]
["c50097.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: response to hormone (GO:0009725);; Biological Process: post-embryonic development (GO:0009791);; Biological Process: regulation of cellular process (GO:0050794);; ","K14486|1.00166e-10|tcc:TCM_029792|K14486 auxin response factor | (RefSeq) Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1","--","--","--","--","--","--","Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 6, partial [Theobroma cacao]"]
["c91262.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Ligand-binding domain of nuclear hormone receptor","--","K","Transcription","--"]
["c15771.graph_c0","--","--","--","K20285|1.50892e-10|smo:SELMODRAFT_4482|K20285 Rab9 effector protein with kelch motifs | (RefSeq) hypothetical protein","[R]","General function prediction only ","Kelch motif;; Kelch motif;; Kelch motif","Acyl-CoA-binding domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ACBP6 PE=2 SV=1","S","Function unknown","Acyl CoA Binding Protein [Klebsormidium nitens]"]
["c39425.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17","Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein F383_04538 [Gossypium arboreum]"]
["c82392.graph_c0","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: L-ascorbate oxidase activity (GO:0008447);; Cellular Component: plant-type cell wall (GO:0009505);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: membrane (GO:0016020);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase","L-ascorbate oxidase homolog OS=Brassica napus OX=3708 GN=Bp10 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: L-ascorbate oxidase homolog [Fragaria vesca subsp. vesca]"]
["c46218.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: translational elongation (GO:0006414);; Cellular Component: integral component of membrane (GO:0016021);; ","K06207|0|gra:105780054|K06207 GTP-binding protein | (RefSeq) translation factor GUF1 homolog, organellar chromatophore","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor Tu GTP binding domain;; Elongation factor Tu domain 2;; 50S ribosome-binding GTPase;; Elongation factor G C-terminus","Putative elongation factor TypA-like SVR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR3 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: GTP-binding protein TypA/BipA homolog [Gossypium hirsutum]"]
["c28861.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","--","[K]","Transcription ","--","Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana OX=3702 GN=At1g02270 PE=2 SV=2","A","RNA processing and modification","PREDICTED: uncharacterized calcium-binding protein At1g02270 [Ricinus communis] "]
["c84018.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","EF hand;; EF-hand domain pair;; EF-hand domain;; EF-hand domain pair","Calmodulin OS=Euglena gracilis OX=3039 PE=1 SV=2","DTZ","--","calmodulin 3b (phosphorylase delta) [Chrysochromulina sp. CCMP291]"]
["c22298.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111300292 [Durio zibethinus]"]
["c87282.graph_c0","[EH]","Amino acid transport and metabolism ;; Coenzyme transport and metabolism ","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: acetolactate synthase activity (GO:0003984);; Biological Process: isoleucine biosynthetic process (GO:0009097);; Biological Process: valine biosynthetic process (GO:0009099);; Molecular Function: thiamine pyrophosphate binding (GO:0030976);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; ","K01652|4.67361e-49|fve:101292251|K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] | (RefSeq) acetolactate synthase 2, chloroplastic","[EH]","--","Thiamine pyrophosphate enzyme, N-terminal TPP binding domain","Acetolactate synthase 3, chloroplastic OS=Brassica napus OX=3708 PE=3 SV=1","E","Amino acid transport and metabolism","PREDICTED: acetolactate synthase 2, chloroplastic [Fragaria vesca subsp. vesca]"]
["c33773.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02873|4.44416e-73|sbi:SORBI_03g044290|K02873 large subunit ribosomal protein L13e | (RefSeq) SORBIDRAFT_03g044290, Sb03g044290; hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L13e","60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","50S ribosomal protein L13e [Basidiobolus meristosporus CBS 931.73]"]
["c11469.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","--","--","--","--","--","--","--"]
["c18488.graph_c0","[H]","Coenzyme transport and metabolism ","Biological Process: isoprenoid biosynthetic process (GO:0008299);; Biological Process: photosynthesis (GO:0015979);; Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765);; ","K05356|2.74852e-35|gra:105782627|K05356 all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85] | (RefSeq) solanesyl diphosphate synthase 1","[H]","Coenzyme transport and metabolism ","--","Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SPS2 PE=1 SV=1","H","Coenzyme transport and metabolism","PREDICTED: solanesyl diphosphate synthase 1-like [Gossypium hirsutum]"]
["c44662.graph_c0","--","--","Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","--","--","S","Function unknown","hypothetical protein TSUD_350590 [Trifolium subterraneum]"]
["c91402.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1","S","Function unknown","uncharacterized protein LOC110109958 [Dendrobium catenatum] "]
["c93976.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: membrane (GO:0016020);; ","--","[C]","Energy production and conversion ","SPFH domain / Band 7 family","--","O","Posttranslational modification, protein turnover, chaperones","band 7 family protein isoform 2 [Galdieria sulphuraria] "]
["c30229.graph_c0","--","--","Biological Process: protein polyubiquitination (GO:0000209);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: ubiquitin protein ligase binding (GO:0031625);; Biological Process: proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161);; Molecular Function: ubiquitin protein ligase activity (GO:0061630);; ","K10688|6.27578e-22|gra:105787505|K10688 ubiquitin-conjugating enzyme E2 W [EC:2.3.2.25] | (RefSeq) probable ubiquitin-conjugating enzyme E2 16","[O]","Posttranslational modification, protein turnover, chaperones ","--","Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana OX=3702 GN=UBC16 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: probable ubiquitin-conjugating enzyme E2 16 [Gossypium raimondii] "]
["c80662.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: transketolase activity (GO:0004802);; Biological Process: metabolic process (GO:0008152);; ","K00615|9.4401e-50|mdm:103418499|K00615 transketolase [EC:2.2.1.1] | (RefSeq) transketolase, chloroplastic","[G]","Carbohydrate transport and metabolism ","Transketolase, thiamine diphosphate binding domain","Transketolase-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TKL-1 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: transketolase, chloroplastic [Malus domestica]"]
["c23194.graph_c2","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","K01723|5.00184e-126|gra:105793767|K01723 hydroperoxide dehydratase [EC:4.2.1.92] | (RefSeq) allene oxide synthase, chloroplastic-like","--","--","Cytochrome P450","Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP74A PE=1 SV=3","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: allene oxide synthase, chloroplastic-like isoform X2 [Gossypium raimondii] "]
["c23955.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","No apical meristem (NAM) protein","NAC domain-containing protein 21/22 OS=Arabidopsis thaliana OX=3702 GN=NAC021 PE=1 SV=2","S","Function unknown","NAC domain-containing protein 21/22 [Durio zibethinus]"]
["c35241.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","UPF0496 protein At3g19330 OS=Arabidopsis thaliana OX=3702 GN=At3g19330 PE=2 SV=2","S","Function unknown","PREDICTED: UPF0496 protein At3g19330 isoform X1 [Gossypium raimondii]"]
["c85260.graph_c0","--","--","Biological Process: protein transport (GO:0015031);; ","K20472|1.24882e-38|pxb:103932754|K20472 coatomer subunit zeta | (RefSeq) coatomer subunit zeta-2-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: coatomer subunit zeta-2-like [Pyrus x bretschneideri] "]
["c91366.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; Molecular Function: phosphopantetheine binding (GO:0031177);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Condensation domain","--","Q","Secondary metabolites biosynthesis, transport and catabolism","Bcnrps3 [Botrytis cinerea B05.10]"]
["c16869.graph_c0","--","--","Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: RNA biosynthetic process (GO:0032774);; ","--","--","--","Protein of unknown function (DUF3531)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108468103 [Gossypium arboreum] "]
["c19477.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: methylenetetrahydrofolate reductase (NAD(P)H) activity (GO:0004489);; Biological Process: methionine metabolic process (GO:0006555);; Biological Process: tetrahydrofolate interconversion (GO:0035999);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00297|3.86366e-57|mdm:103456317|K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] | (RefSeq) methylenetetrahydrofolate reductase 2-like","[E]","Amino acid transport and metabolism ","Methylenetetrahydrofolate reductase","Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana OX=3702 GN=MTHFR2 PE=1 SV=2","E","Amino acid transport and metabolism","PREDICTED: methylenetetrahydrofolate reductase 2-like [Malus domestica]"]
["c69168.graph_c0","--","--","--","--","[WV]","--","--","--","S","Function unknown","--"]
["c62186.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","hypothetical protein B456_001G025100, partial [Gossypium raimondii]"]
["c58808.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Biological Process: response to biotic stimulus (GO:0009607);; ","--","--","--","Pathogenesis-related protein Bet v I family","Major allergen Pru av 1 OS=Prunus avium OX=42229 GN=PRUA1 PE=1 SV=1","S","Function unknown","PREDICTED: major pollen allergen Bet v 1-A-like [Gossypium hirsutum] "]
["c90618.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Pellino","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c4080.graph_c0","--","--","--","--","--","--","C2 domain","--","--","--","hypothetical protein DM01DRAFT_1283365 [Hesseltinella vesiculosa]"]
["c94398.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: translational elongation (GO:0006414);; ","K03234|1.38498e-33|mpp:MICPUCDRAFT_27460|K03234 elongation factor 2 | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Elongation Factor G, domain II","Elongation factor 2 OS=Arabidopsis thaliana OX=3702 GN=LOS1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","P-loop containing nucleoside triphosphate hydrolase protein [Rhizoclosmatium globosum]"]
["c22389.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","--","WEB family protein At5g55860 OS=Arabidopsis thaliana OX=3702 GN=At5g55860 PE=1 SV=1","S","Function unknown","PREDICTED: WEB family protein At5g55860 [Gossypium arboreum] "]
["c39603.graph_c1","--","--","Molecular Function: helicase activity (GO:0004386);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108473656 [Gossypium arboreum] "]
["c49845.graph_c0","[F]","Nucleotide transport and metabolism ","--","--","--","--","Haloacid dehalogenase-like hydrolase;; HAD-hyrolase-like;; Haloacid dehalogenase-like hydrolase","--","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_AA24883 [Gossypium barbadense]"]
["c27572.graph_c0","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18605464 [Theobroma cacao]"]
["c52544.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: defensin-like protein 183 [Gossypium hirsutum]"]
["c47462.graph_c0","--","--","Molecular Function: helicase activity (GO:0004386);; ","--","--","--","Protein of unknown function (DUF632);; Protein of unknown function (DUF630);; Protein of unknown function (DUF632);; Assemblin (Peptidase family S21)","Nitrate regulatory gene2 protein OS=Arabidopsis thaliana OX=3702 GN=NRG2 PE=1 SV=1","S","Function unknown","Holliday junction ATP-dependent DNA helicase RuvB [Gossypium arboreum]"]
["c38557.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c33392.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105804822 [Gossypium raimondii] "]
["c21846.graph_c1","--","--","Biological Process: protein homooligomerization (GO:0051260);; ","--","[R]","General function prediction only ","--","FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1","S","Function unknown","FH protein interacting protein FIP2 isoform X2 [Durio zibethinus]"]
["c90322.graph_c0","--","--","Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Biological Process: RNA-dependent DNA biosynthetic process (GO:0006278);; ","--","[R]","General function prediction only ","--","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: RNA-directed DNA polymerase homolog [Gossypium hirsutum]"]
["c83786.graph_c0","--","--","Molecular Function: protein domain specific binding (GO:0019904);; ","K06630|1.78935e-26|csl:COCSUDRAFT_30298|K06630 14-3-3 protein epsilon | (RefSeq) 14-3-3 protein","[O]","Posttranslational modification, protein turnover, chaperones ","14-3-3 protein","14-3-3-like protein F OS=Nicotiana tabacum OX=4097 PE=2 SV=1","T","Signal transduction mechanisms","14-3-3 protein [Coccomyxa subellipsoidea C-169] "]
["c37211.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD05824 [Gossypium barbadense]"]
["c83489.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: carbonate dehydratase activity (GO:0004089);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: carbon utilization (GO:0015976);; ","K01673|1.2271e-54|fve:101302713|K01673 carbonic anhydrase [EC:4.2.1.1] | (RefSeq) carbonic anhydrase 2-like","[P]","Inorganic ion transport and metabolism ","Carbonic anhydrase","Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum OX=4097 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: carbonic anhydrase 2-like [Fragaria vesca subsp. vesca]"]
["c17074.graph_c0","--","--","Molecular Function: lyase activity (GO:0016829);; Molecular Function: metal ion binding (GO:0046872);; ","K12742|3.92575e-86|gra:105798101|K12742 isoprene synthase [EC:4.2.3.27] | (RefSeq) terpene synthase 10-like","--","--","Terpene synthase, N-terminal domain;; Terpene synthase family, metal binding domain","(-)-alpha-terpineol synthase OS=Vitis vinifera OX=29760 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_006G009100 [Gossypium raimondii]"]
["c16262.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: carbonate dehydratase activity (GO:0004089);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: carbon utilization (GO:0015976);; ","K01673|1.48355e-156|gra:105766025|K01673 carbonic anhydrase [EC:4.2.1.1] | (RefSeq) carbonic anhydrase 2-like","[P]","Inorganic ion transport and metabolism ","Carbonic anhydrase","Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum OX=4097 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: carbonic anhydrase 2-like isoform X1 [Gossypium arboreum]"]
["c27278.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: defense response (GO:0006952);; Biological Process: response to biotic stimulus (GO:0009607);; ","--","--","--","Pathogenesis-related protein Bet v I family","Class-10 pathogenesis-related protein 1 OS=Medicago truncatula OX=3880 GN=PR10-1 PE=2 SV=1","--","--","disease-resistance response protein [Medicago truncatula] "]
["c88558.graph_c0","[T]","Signal transduction mechanisms ","Cellular Component: nucleus (GO:0005634);; Biological Process: cellular process (GO:0009987);; Cellular Component: macromolecular complex (GO:0032991);; Biological Process: single-organism process (GO:0044699);; Biological Process: biological regulation (GO:0065007);; ","K06268|2.15837e-20|gsl:Gasu_26330|K06268 serine/threonine-protein phosphatase 2B regulatory subunit | (RefSeq) calcineurin subunit B","[T]","Signal transduction mechanisms ","EF hand;; EF-hand domain pair;; EF-hand domain pair;; EF-hand domain;; EF hand","Calcium-dependent protein kinase 14 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK14 PE=3 SV=1","DTZ","--","hypothetical protein AOL_s00215g577 [Arthrobotrys oligospora ATCC 24927] "]
["c26452.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108476025 [Gossypium arboreum] "]
["c41664.graph_c0","--","--","--","--","--","--","--","Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica OX=33127 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","non-specific lipid-transfer protein-like [Herrania umbratica]"]
["c50369.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_002G040900 [Gossypium raimondii]"]
["c53056.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA35995 [Gossypium barbadense]"]
["c89561.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: translational initiation (GO:0006413);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; ","K02519|2.37931e-25|pmum:103325866|K02519 translation initiation factor IF-2 | (RefSeq) translation initiation factor IF-2, chloroplastic","[J]","Translation, ribosomal structure and biogenesis ","Translation-initiation factor 2","Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=IF2CP PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","translation initiation factor IF-2, chloroplastic [Prunus avium]"]
["c91650.graph_c0","--","--","--","--","--","--","--","--","G","Carbohydrate transport and metabolism","PREDICTED: uncharacterized protein LOC107887575 [Gossypium hirsutum]"]
["c49357.graph_c1","--","--","--","--","[L]","Replication, recombination and repair ","TLD","--","L","Replication, recombination and repair","hypothetical protein B456_008G096200 [Gossypium raimondii]"]
["c7371.graph_c0","--","--","--","--","[AR]","--","ROKNT (NUC014) domain;; KH domain;; KH domain","--","S","Function unknown","--"]
["c17717.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA metabolic process (GO:0006259);; Biological Process: glutamine metabolic process (GO:0006541);; Molecular Function: DNA-dependent ATPase activity (GO:0008094);; Molecular Function: transferase activity (GO:0016740);; ","--","[F]","Nucleotide transport and metabolism ","--","Gamma-glutamyl peptidase 3 OS=Arabidopsis thaliana OX=3702 GN=GGP3 PE=1 SV=1","F","Nucleotide transport and metabolism","gamma-glutamyl peptidase 5 [Jatropha curcas] "]
["c30612.graph_c2","--","--","Biological Process: response to jasmonic acid (GO:0009753);; ","K13464|4.26135e-20|gra:105794807|K13464 jasmonate ZIM domain-containing protein | (RefSeq) protein TIFY 9","--","--","tify domain","--","S","Function unknown","hypothetical protein B456_005G196200 [Gossypium raimondii]"]
["c77149.graph_c0","--","--","--","--","--","--","Zinc-binding domain","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c41950.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Molecular Function: 5S rRNA binding (GO:0008097);; ","K02897|4.19887e-109|gra:105789373|K02897 large subunit ribosomal protein L25 | (RefSeq) uncharacterized LOC105789373","--","--","Ribosomal L25p family","--","J","Translation, ribosomal structure and biogenesis","uncharacterized protein LOC110416405 [Herrania umbratica]"]
["c38129.graph_c0","--","--","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana OX=3702 GN=At5g33370 PE=2 SV=1","S","Function unknown","PREDICTED: GDSL esterase/lipase At5g33370-like [Fragaria vesca subsp. vesca]"]
["c93542.graph_c0","--","--","Molecular Function: protein binding (GO:0005515);; ","--","[R]","General function prediction only ","Tetratricopeptide repeat;; Tetratricopeptide repeat","Protein CLMP1 OS=Arabidopsis thaliana OX=3702 GN=CLMP1 PE=1 SV=1","S","Function unknown","Mitochondrial import receptor subunit tom-70 [Taphrina deformans PYCC 5710]"]
["c36208.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","K10406|3.26085e-58|gra:105761089|K10406 kinesin family member C2/C3 | (RefSeq) kinesin-4-like","[Z]","Cytoskeleton ","--","Kinesin-like protein KIN-14F OS=Oryza sativa subsp. japonica OX=39947 GN=KIN14F PE=2 SV=2","Z","Cytoskeleton","PREDICTED: kinesin-4-like isoform X4 [Gossypium raimondii]"]
["c46758.graph_c1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K15718|0|gra:105796638|K15718 linoleate 9S-lipoxygenase [EC:1.13.11.58] | (RefSeq) linoleate 9S-lipoxygenase 5, chloroplastic-like","--","--","Lipoxygenase;; Lipoxygenase;; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily;; PLAT/LH2 domain;; Lipoxygenase","Linoleate 9S-lipoxygenase 5 OS=Arabidopsis thaliana OX=3702 GN=LOX5 PE=2 SV=2","S","Function unknown","PREDICTED: linoleate 9S-lipoxygenase 5, chloroplastic-like [Gossypium raimondii] "]
["c72040.graph_c0","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: isomerase activity (GO:0016853);; ","K09580|1.04598e-23|smo:SELMODRAFT_142613|K09580 protein disulfide-isomerase A1 [EC:5.3.4.1] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Thioredoxin","Protein disulfide-isomerase OS=Hordeum vulgare OX=4513 GN=PDI PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein EPUL_001297, partial [Erysiphe pulchra]"]
["c75032.graph_c0","--","--","Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","K02882|1.34218e-13|gsl:Gasu_61420|K02882 large subunit ribosomal protein L18Ae | (RefSeq) 60S ribosomal protein L18Ae","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A","60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","60S ribosomal protein L18a, partial [Blastocystis sp. ATCC 50177/Nand II]"]
["c39629.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: membrane (GO:0016020);; ","--","[TU]","--","EF hand;; EF-hand domain pair;; EF-hand domain;; EF hand;; EF-hand domain pair;; Secreted protein acidic and rich in cysteine Ca binding region","Calcium-binding protein CML19 OS=Arabidopsis thaliana OX=3702 GN=CML19 PE=1 SV=1","S","Function unknown","PREDICTED: reticulocalbin-2 [Gossypium raimondii] "]
["c41718.graph_c0","--","--","--","--","--","--","--","Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF7 PE=1 SV=1","S","Function unknown","PREDICTED: multiple organellar RNA editing factor 7, mitochondrial isoform X1 [Gossypium arboreum] "]
["c35751.graph_c1","--","--","Biological Process: cell cycle (GO:0007049);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: cyclin-dependent protein serine/threonine kinase regulator activity (GO:0016538);; Biological Process: regulation of protein kinase activity (GO:0045859);; Biological Process: cell division (GO:0051301);; ","K02219|1.17471e-46|gra:105768954|K02219 cyclin-dependent kinase regulatory subunit CKS1 | (RefSeq) cyclin-dependent kinases regulatory subunit 1","[D]","Cell cycle control, cell division, chromosome partitioning ","Cyclin-dependent kinase regulatory subunit","Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Gossypium raimondii] "]
["c24656.graph_c0","--","--","Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: integral component of membrane (GO:0016021);; ","K03541|1.2159e-73|mtr:MTR_2g064650|K03541 photosystem II 10kDa protein | (RefSeq) photosystem II 10 kDa proteinPsbR protein","--","--","Photosystem II 10 kDa polypeptide PsbR","Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1","S","Function unknown","photosystem II 10 kDa proteinPsbR protein [Medicago truncatula] "]
["c13936.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","K02183|1.24951e-56|gra:105779195|K02183 calmodulin | (RefSeq) probable calcium-binding protein CML45","[T]","Signal transduction mechanisms ","--","Probable calcium-binding protein CML45 OS=Arabidopsis thaliana OX=3702 GN=CML45 PE=1 SV=1","DTZ","--","PREDICTED: probable calcium-binding protein CML45 [Gossypium raimondii] "]
["c38272.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: polyadenylate-binding protein-interacting protein 3-like isoform X2 [Gossypium raimondii]"]
["c22121.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1","S","Function unknown","hypothetical protein B456_011G259700, partial [Gossypium raimondii]"]
["c8340.graph_c0","--","--","--","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeats (2 copies)","--","S","Function unknown","receptor protein-tyrosine kinase CEPR1 [Cucurbita moschata]"]
["c95177.graph_c0","--","--","--","--","--","--","--","Flowering-promoting factor 1-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0282400 PE=3 SV=1","S","Function unknown","flowering promoting factor-like 1, partial [Oryza sativa Indica Group]"]
["c79746.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA22351 [Gossypium barbadense] "]
["c73119.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: purine ribonucleoside binding (GO:0032550);; Molecular Function: adenyl ribonucleotide binding (GO:0032559);; Molecular Function: anion binding (GO:0043168);; ","K01895|2.47874e-70|bpg:Bathy14g03320|K01895 acetyl-CoA synthetase [EC:6.2.1.1] | (RefSeq) acetyl-CoA synthetase","[I]","Lipid transport and metabolism ","AMP-binding enzyme C-terminal domain;; AMP-binding enzyme","Acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal OS=Arabidopsis thaliana OX=3702 GN=ACS PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein M569_10292, partial [Genlisea aurea]"]
["c14507.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Protein of unknown function (DUF668)","--","S","Function unknown","uncharacterized protein LOC111310626 [Durio zibethinus]"]
["c42222.graph_c0","[C]","Energy production and conversion ","Molecular Function: D-lactate dehydrogenase (cytochrome) activity (GO:0004458);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: D-lactate dehydrogenase activity (GO:0008720);; Molecular Function: glycolate oxidase activity (GO:0008891);; Molecular Function: glycolate dehydrogenase activity (GO:0019154);; Molecular Function: identical protein binding (GO:0042802);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: methylglyoxal catabolic process (GO:0051596);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00102|0|tcc:TCM_025063|K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] | (RefSeq) FAD-linked oxidases family protein isoform 1","[C]","Energy production and conversion ","FAD linked oxidases, C-terminal domain;; FAD binding domain","D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DLD PE=1 SV=1","C","Energy production and conversion","PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Theobroma cacao]"]
["c80478.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: chloroplast organization (GO:0009658);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytosolic ribosome (GO:0022626);; Biological Process: protein refolding (GO:0042026);; Cellular Component: apoplast (GO:0048046);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","TCP-1/cpn60 chaperonin family","RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus OX=3708 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Fragaria vesca subsp. vesca]"]
["c34196.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107962062 [Gossypium hirsutum]"]
["c40645.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF3444)","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA21174 [Gossypium barbadense]"]
["c88733.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: putative DNA-binding protein ESCAROLA [Fragaria vesca subsp. vesca]"]
["c82370.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","G","Carbohydrate transport and metabolism","hypothetical protein L486_04571 [Kwoniella mangroviensis CBS 10435]"]
["c49485.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: regulation of lipid kinase activity (GO:0043550);; Cellular Component: PAS complex (GO:0070772);; ","K15305|1.55096e-166|tcc:TCM_011046|K15305 vacuole morphology and inheritance protein 14 | (RefSeq) ARM repeat superfamily protein isoform 1","[S]","Function unknown ","Vacuolar 14 Fab1-binding region;; HEAT repeat;; HEAT-like repeat;; HEAT repeats;; non-SMC mitotic condensation complex subunit 1;; Required for nuclear transport of RNA pol II C-terminus 1;; Tti2 family;; Proteasome stabiliser;; Vacuolar protein 14 C-terminal Fig4p binding;; Vacuolar 14 Fab1-binding region;; Vacuolar protein 14 C-terminal Fig4p binding;; Vacuolar protein 14 C-terminal Fig4p binding","Protein VAC14 homolog OS=Arabidopsis thaliana OX=3702 GN=VAC14 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","Armadillo-like helical [Corchorus capsularis]"]
["c56511.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; ","K06688|3.34182e-11|eus:EUTSA_v10011743mg|K06688 ubiquitin-conjugating enzyme E2 C [EC:2.3.2.23] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","--","Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana OX=3702 GN=UBC19 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein EUTSA_v10011743mg [Eutrema salsugineum]"]
["c29350.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: metal ion binding (GO:0046872);; ","K13192|5.83497e-32|gra:105779920|K13192 RNA-binding protein 26 | (RefSeq) zinc finger CCCH domain-containing protein 41-like","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD20723 [Gossypium barbadense]"]
["c44819.graph_c0","--","--","--","--","--","--","C1 domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107938191 [Gossypium hirsutum]"]
["c29027.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity (GO:0004018);; Biological Process: 'de novo' IMP biosynthetic process (GO:0006189);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: 'de novo' AMP biosynthetic process (GO:0044208);; Biological Process: protein tetramerization (GO:0051262);; Molecular Function: (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity (GO:0070626);; ","K01756|0|tcc:TCM_042608|K01756 adenylosuccinate lyase [EC:4.3.2.2] | (RefSeq) L-Aspartase-like family protein","[F]","Nucleotide transport and metabolism ","Lyase;; Adenylosuccinate lyase C-terminal","--","F","Nucleotide transport and metabolism","PREDICTED: adenylosuccinate lyase [Theobroma cacao] "]
["c46422.graph_c0","--","--","--","--","--","--","CorA-like Mg2+ transporter protein","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105795136 [Gossypium raimondii] "]
["c50447.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_009G370500 [Gossypium raimondii]"]
["c72967.graph_c0","--","--","--","--","--","--","--","Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1","S","Function unknown","protein RALF-like 19 [Spinacia oleracea]"]
["c34180.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: large ribosomal subunit (GO:0015934);; ","K02898|8.34328e-39|crb:CARUB_v10027323mg|K02898 large subunit ribosomal protein L26e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal proteins L26 eukaryotic, L24P archaeal;; KOW motif","60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein AXX17_AT5G67620 [Arabidopsis thaliana]"]
["c58484.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: transcription repressor OFP6-like [Gossypium arboreum]"]
["c93902.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; ","K13525|4.16113e-55|fve:101315409|K13525 transitional endoplasmic reticulum ATPase | (RefSeq) cell division control protein 48 homolog E-like","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA)","Cell division control protein 48 homolog E OS=Arabidopsis thaliana OX=3702 GN=CDC48E PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","cell division cycle protein 48 homolog isoform X4 [Arachis duranensis]"]
["c48306.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","--","[R]","General function prediction only ","Ataxin-2 C-terminal region","Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana OX=3702 GN=CID9 PE=4 SV=1","S","Function unknown","hypothetical protein B456_007G335300 [Gossypium raimondii]"]
["c49106.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111280293 isoform X5 [Durio zibethinus] "]
["c25436.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[GMW]","--","Exostosin family","Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana OX=3702 GN=At5g03795 PE=3 SV=2","S","Function unknown","PREDICTED: probable glycosyltransferase At5g03795 [Gossypium arboreum]"]
["c56123.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; PPR repeat","Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1","S","Function unknown","putative pentatricopeptide repeat-containing protein At1g74400 [Herrania umbratica]"]
["c48447.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: translational initiation (GO:0006413);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; ","K02519|0|gra:105782406|K02519 translation initiation factor IF-2 | (RefSeq) translation initiation factor IF-2, chloroplastic","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor Tu GTP binding domain;; Translation-initiation factor 2;; 50S ribosome-binding GTPase;; Translation initiation factor IF-2, N-terminal region;; Ras family","Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=IF2CP PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: translation initiation factor IF-2, chloroplastic [Gossypium arboreum] "]
["c89022.graph_c0","--","--","--","--","--","--","--","--","--","--","formin-like protein 6 isoform X1 [Durio zibethinus]"]
["c73692.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC109115063 [Nelumbo nucifera]"]
["c16656.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","EF hand;; EF hand;; EF-hand domain;; EF-hand domain pair;; EF-hand domain pair;; Secreted protein acidic and rich in cysteine Ca binding region","Calmodulin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=CML5 PE=2 SV=2","DTZ","--","calmodulin-like protein 3 [Durio zibethinus]"]
["c89811.graph_c0","--","--","--","--","--","--","Lecithin retinol acyltransferase","--","--","--","PREDICTED: uncharacterized protein LOC101304340 [Fragaria vesca subsp. vesca]"]
["c1645.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02915|2.53872e-30|apro:F751_3610|K02915 large subunit ribosomal protein L34e | (RefSeq) 60S ribosomal protein L34","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L34e","60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","ribosomal protein L34e [Mortierella elongata AG-77]"]
["c52788.graph_c0","--","--","Cellular Component: monolayer-surrounded lipid storage body (GO:0012511);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Oleosin","Oleosin 18.2 kDa OS=Gossypium hirsutum OX=3635 GN=MATP6-A PE=2 SV=1","S","Function unknown","PREDICTED: oleosin 18.2 kDa [Gossypium raimondii] "]
["c43317.graph_c0","[G]","Carbohydrate transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K02429|4.87117e-93|ppp:PHYPADRAFT_173818|K02429 MFS transporter, FHS family, L-fucose permease | (RefSeq) hypothetical protein","--","--","Major Facilitator Superfamily","--","G","Carbohydrate transport and metabolism","major facilitator superfamily domain-containing protein [Naematelia encephala]"]
["c2386.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450;; Cytochrome P450","Geraniol 8-hydroxylase OS=Catharanthus roseus OX=4058 GN=CYP76B6 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein GOBAR_DD11052 [Gossypium barbadense]"]
["c87592.graph_c0","[C]","Energy production and conversion ","Molecular Function: isocitrate lyase activity (GO:0004451);; Biological Process: glyoxylate cycle (GO:0006097);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Cellular Component: glyoxysome (GO:0009514);; Molecular Function: methylisocitrate lyase activity (GO:0046421);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912);; ","K01637|4.38281e-39|atr:18421613|K01637 isocitrate lyase [EC:4.1.3.1] | (RefSeq) isocitrate lyase","[C]","Energy production and conversion ","Isocitrate lyase family","Isocitrate lyase 2 (Fragment) OS=Glycine max OX=3847 GN=ICL2 PE=2 SV=1","C","Energy production and conversion","isocitrate lyase and phosphorylmutase [Stagonospora sp. SRC1lsM3a]"]
["c35095.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161);; Molecular Function: ubiquitin protein ligase activity (GO:0061630);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-H2 zinc finger domain;; RING-like zinc finger","Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD26932 [Gossypium barbadense]"]
["c37408.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","BEL1-like homeodomain protein 8, putative [Theobroma cacao]"]
["c56263.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD08434 [Gossypium barbadense]"]
["c20279.graph_c0","--","--","--","--","[R]","General function prediction only ","zinc-binding in reverse transcriptase","--","S","Function unknown","Geminivirus AR1/BR1 coat protein [Corchorus capsularis]"]
["c14870.graph_c0","--","--","Biological Process: intracellular protein transport (GO:0006886);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: COPII vesicle coat (GO:0030127);; ","K14007|4.55158e-24|tcc:TCM_035130|K14007 protein transport protein SEC24 | (RefSeq) Sec23/Sec24 protein transport family protein","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana OX=3702 GN=CEF PE=2 SV=3","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: protein transport protein Sec24-like CEF [Gossypium hirsutum]"]
["c40250.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: S-adenosylmethionine-homocysteine S-methyltransferase activity (GO:0008898);; Biological Process: methionine biosynthetic process (GO:0009086);; Biological Process: methylation (GO:0032259);; ","K00547|1.47462e-167|gra:105794739|K00547 homocysteine S-methyltransferase [EC:2.1.1.10] | (RefSeq) homocysteine S-methyltransferase 1","[E]","Amino acid transport and metabolism ","Homocysteine S-methyltransferase;; Homocysteine S-methyltransferase","Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica OX=36774 GN=HMT1 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: homocysteine S-methyltransferase 1 [Gossypium raimondii] "]
["c95261.graph_c0","[EH]","Amino acid transport and metabolism ;; Coenzyme transport and metabolism ","Biological Process: tryptophan biosynthetic process (GO:0000162);; Molecular Function: anthranilate synthase activity (GO:0004049);; ","K01657|8.27928e-44|fve:101299282|K01657 anthranilate synthase component I [EC:4.1.3.27] | (RefSeq) anthranilate synthase alpha subunit 2, chloroplastic-like","[E]","Amino acid transport and metabolism ","--","Anthranilate synthase alpha subunit 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ASA2 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic-like isoform X2 [Fragaria vesca subsp. vesca]"]
["c57503.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: phosphoethanolamine N-methyltransferase activity (GO:0000234);; Biological Process: phosphatidylcholine biosynthetic process (GO:0006656);; Biological Process: methylation (GO:0032259);; ","K05929|1.99503e-37|gra:105794081|K05929 phosphoethanolamine N-methyltransferase [EC:2.1.1.103] | (RefSeq) phosphoethanolamine N-methyltransferase 1-like","[IR]","--","--","Phosphoethanolamine N-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=NMT3 PE=2 SV=2","S","Function unknown","hypothetical protein B456_005G132000 [Gossypium raimondii]"]
["c58156.graph_c0","--","--","--","--","--","--","--","--","--","--","protein FAF-like, chloroplastic [Durio zibethinus]"]
["c43020.graph_c1","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","Nudix hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=NUDT9 PE=2 SV=1","S","Function unknown","PREDICTED: nudix hydrolase 9-like [Gossypium hirsutum] "]
["c9748.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Receptor protein-tyrosine kinase CEPR1 OS=Arabidopsis thaliana OX=3702 GN=CEPR1 PE=1 SV=1","S","Function unknown","LOW QUALITY PROTEIN: receptor-like protein kinase HAIKU2 [Durio zibethinus]"]
["c10447.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","K12160|8.70613e-52|nnu:104586016|K12160 small ubiquitin-related modifier | (RefSeq) small ubiquitin-related modifier 1-like","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin-2 like Rad60 SUMO-like;; Ubiquitin family","Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: small ubiquitin-related modifier 1-like [Cicer arietinum]"]
["c77560.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","reverse transcriptase [Corchorus capsularis]"]
["c42748.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105768684 [Gossypium raimondii] "]
["c37331.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; ","K02693|8.06074e-35|tcc:TCM_003771|K02693 photosystem I subunit IV | (RefSeq) Photosystem I subunit E-2","--","--","Photosystem I reaction centre subunit IV / PsaE","Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAE PE=1 SV=2","C","Energy production and conversion","PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Gossypium arboreum] "]
["c30648.graph_c0","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|0|tcc:TCM_004938|K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] | (RefSeq) ATP binding cassette subfamily B4 isoform 1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter transmembrane region;; ABC transporter","ABC transporter B family member 21 OS=Arabidopsis thaliana OX=3702 GN=ABCB21 PE=1 SV=2","V","Defense mechanisms","PREDICTED: ABC transporter B family member 21-like [Gossypium hirsutum]"]
["c51333.graph_c0","--","--","--","--","--","--","C1 domain","--","S","Function unknown","uncharacterized protein LOC110421863 [Herrania umbratica]"]
["c44305.graph_c0","--","--","Molecular Function: SNARE binding (GO:0000149);; Molecular Function: SNAP receptor activity (GO:0005484);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein targeting to vacuole (GO:0006623);; Biological Process: ER to Golgi vesicle-mediated transport (GO:0006888);; Biological Process: intra-Golgi vesicle-mediated transport (GO:0006891);; Biological Process: Golgi to vacuole transport (GO:0006896);; Cellular Component: ER to Golgi transport vesicle membrane (GO:0012507);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: SNARE complex (GO:0031201);; Cellular Component: late endosome membrane (GO:0031902);; Biological Process: retrograde transport, endosome to Golgi (GO:0042147);; Biological Process: vesicle fusion with Golgi apparatus (GO:0048280);; ","K08496|1.0822e-49|gra:105804419|K08496 golgi SNAP receptor complex member 2 | (RefSeq) membrin-11","[U]","Intracellular trafficking, secretion, and vesicular transport ","Snare region anchored in the vesicle membrane C-terminus","Membrin-11 OS=Arabidopsis thaliana OX=3702 GN=MEMB11 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: membrin-11 [Gossypium raimondii] "]
["c85669.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c47913.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Molecular Function: lipid binding (GO:0008289);; Biological Process: animal organ morphogenesis (GO:0009887);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: meristem initiation (GO:0010014);; Biological Process: regulation of meristem growth (GO:0010075);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: determination of dorsal identity (GO:0048263);; Biological Process: integument development (GO:0080060);; ","K09338|1.47434e-165|tcc:TCM_028866|K09338 homeobox-leucine zipper protein | (RefSeq) Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1","--","--","START domain;; Homeobox domain","Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana OX=3702 GN=ATHB-15 PE=1 SV=1","K","Transcription","hypothetical protein COLO4_30489 [Corchorus olitorius]"]
["c38452.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: protein E6-like [Gossypium hirsutum]"]
["c87540.graph_c0","--","--","--","--","--","--","Serine protease gd N-terminus","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c47028.graph_c1","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of proton transport (GO:0010155);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Proton pump-interactor 1 OS=Arabidopsis thaliana OX=3702 GN=PPI1 PE=1 SV=2","S","Function unknown","PREDICTED: proton pump-interactor 1 [Gossypium raimondii]"]
["c95182.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein GOBAR_DD23386 [Gossypium barbadense]"]
["c40276.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: flavonoid biosynthetic process (GO:0009813);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: flavonoid glucuronidation (GO:0052696);; Molecular Function: quercetin 3-O-glucosyltransferase activity (GO:0080043);; Molecular Function: quercetin 7-O-glucosyltransferase activity (GO:0080044);; ","--","[GC]","--","UDP-glucoronosyl and UDP-glucosyl transferase","UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana OX=3702 GN=UGT83A1 PE=2 SV=1","S","Function unknown","PREDICTED: UDP-glycosyltransferase 83A1-like [Gossypium raimondii] "]
["c39689.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; zinc-binding in reverse transcriptase","--","S","Function unknown","uncharacterized protein LOC106360747 [Brassica napus]"]
["c50595.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: ubiquitin-like protein pmt3/smt3 [Gossypium hirsutum]"]
["c35876.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","B3 DNA binding domain","B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0234100 PE=2 SV=1","S","Function unknown","PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 [Gossypium hirsutum]"]
["c70769.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","Myb-like DNA-binding domain","--","S","Function unknown","hypothetical protein GOBAR_DD33207 [Gossypium barbadense]"]
["c44516.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","S","Function unknown","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]"]
["c51936.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Plant organelle RNA recognition domain","Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1","S","Function unknown","PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Gossypium raimondii]"]
["c38037.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: transcription, DNA-templated (GO:0006351);; ","K03023|7.96436e-118|tcc:TCM_015180|K03023 DNA-directed RNA polymerase III subunit RPC3 | (RefSeq) RNA polymerase III subunit RPC82 family protein, putative isoform 1","[K]","Transcription ","RNA polymerase III subunit RPC82","--","K","Transcription","DNA-directed RNA polymerase III subunit RPC3 isoform X3 [Durio zibethinus]"]
["c48031.graph_c0","[GI]","Carbohydrate transport and metabolism ;; Lipid transport and metabolism ","Cellular Component: cell wall (GO:0005618);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin catabolic process (GO:0045490);; Molecular Function: pectinesterase inhibitor activity (GO:0046910);; ","K01051|0|tcc:TCM_037444|K01051 pectinesterase [EC:3.1.1.11] | (RefSeq) Plant invertase/pectin methylesterase inhibitor superfamily","--","--","Pectinesterase;; Plant invertase/pectin methylesterase inhibitor;; Pectinesterase","Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana OX=3702 GN=PME12 PE=2 SV=1","G","Carbohydrate transport and metabolism","Plant invertase/pectin methylesterase inhibitor superfamily [Theobroma cacao]"]
["c24769.graph_c0","[R]","General function prediction only ","Biological Process: negative regulation of shoot apical meristem development (GO:1902184);; ","K14829|0|gra:105774281|K14829 pre-rRNA-processing protein IPI3 | (RefSeq) protein ROOT INITIATION DEFECTIVE 3","[R]","General function prediction only ","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain","Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1","S","Function unknown","PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Gossypium arboreum] "]
["c64158.graph_c0","--","--","Molecular Function: protein binding (GO:0005515);; Biological Process: response to cold (GO:0009409);; Cellular Component: photosystem I (GO:0009522);; Cellular Component: photosystem II (GO:0009523);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to high light intensity (GO:0009644);; Biological Process: response to low light intensity stimulus (GO:0009645);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: photosynthesis, light harvesting in photosystem I (GO:0009768);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Cellular Component: light-harvesting complex (GO:0030076);; Molecular Function: pigment binding (GO:0031409);; Molecular Function: metal ion binding (GO:0046872);; ","K08909|1.75267e-67|mtr:MTR_5g098785|K08909 light-harvesting complex I chlorophyll a/b binding protein 3 | (RefSeq) light-harvesting complex I chlorophyll A/B-binding protein","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB8 PE=3 SV=1","S","Function unknown","light-harvesting complex I chlorophyll A/B-binding protein [Medicago truncatula] "]
["c79222.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","MG2 domain","--","S","Function unknown","--"]
["c79019.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC101298085 [Fragaria vesca subsp. vesca]"]
["c42779.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105798238 [Gossypium raimondii]"]
["c38510.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein COLO4_18732 [Corchorus olitorius]"]
["c55804.graph_c0","--","--","Molecular Function: phosphatidylinositol binding (GO:0035091);; ","--","--","--","--","--","S","Function unknown","hypothetical protein B456_011G084800 [Gossypium raimondii]"]
["c88762.graph_c0","--","--","Biological Process: formation of translation preinitiation complex (GO:0001731);; Molecular Function: translation initiation factor activity (GO:0003743);; Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852);; Biological Process: regulation of translational initiation (GO:0006446);; Cellular Component: eukaryotic 43S preinitiation complex (GO:0016282);; Cellular Component: eukaryotic 48S preinitiation complex (GO:0033290);; ","K15030|7.16839e-44|fve:101291071|K15030 translation initiation factor 3 subunit M | (RefSeq) eukaryotic translation initiation factor 3 subunit M","[R]","General function prediction only ","PCI domain","--","J","Translation, ribosomal structure and biogenesis","PREDICTED: eukaryotic translation initiation factor 3 subunit M [Fragaria vesca subsp. vesca]"]
["c91776.graph_c0","[P]","Inorganic ion transport and metabolism ","--","--","--","--","TonB dependent receptor","--","P","Inorganic ion transport and metabolism","--"]
["c66361.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal large subunit assembly (GO:0000027);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; Biological Process: assembly of large subunit precursor of preribosome (GO:1902626);; ","K02896|8.94186e-60|ppp:PHYPADRAFT_226070|K02896 large subunit ribosomal protein L24e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L24e","Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein LY90DRAFT_453966 [Neocallimastix californiae] "]
["c7346.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X1 [Theobroma cacao]"]
["c44989.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: intracellular protein transport (GO:0006886);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","VHS domain;; GAT domain","TOM1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=TOL2 PE=1 SV=1","S","Function unknown","PREDICTED: target of Myb protein 1-like [Gossypium raimondii] "]
["c6883.graph_c1","[V]","Defense mechanisms ","Cellular Component: mitochondrion (GO:0005739);; Molecular Function: thioredoxin peroxidase activity (GO:0008379);; Biological Process: cellular response to oxidative stress (GO:0034599);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K03386|4.42144e-58|cre:CHLREDRAFT_155464|K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15] | (RefSeq) PRX2; 2-cys peroxiredoxin","[O]","Posttranslational modification, protein turnover, chaperones ","AhpC/TSA family;; Redoxin","2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=BAS1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","peroxiredoxin 2 [Rhizoclosmatium globosum]"]
["c72336.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CDL12_21481 [Handroanthus impetiginosus]"]
["c66067.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","--","--","--","--","--","PREDICTED: probable serine/threonine protein kinase IRE [Gossypium hirsutum]"]
["c46245.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: magnesium ion binding (GO:0000287);; Biological Process: sucrose biosynthetic process (GO:0005986);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: sucrose-phosphate phosphatase activity (GO:0050307);; ","K07024|9.33574e-92|gra:105770662|K07024 sucrose-6-phosphatase&#160; [EC:3.1.3.24] | (RefSeq) sucrose-phosphatase 2-like","--","--","Sucrose-6F-phosphate phosphohydrolase;; Sucrose-6-phosphate phosphohydrolase C-terminal;; haloacid dehalogenase-like hydrolase;; Protein prenyltransferase alpha subunit repeat;; Sucrose-6F-phosphate phosphohydrolase","Probable sucrose-phosphatase 2 OS=Arabidopsis thaliana OX=3702 GN=SPP2 PE=2 SV=2","S","Function unknown","hypothetical protein B456_009G301900 [Gossypium raimondii]"]
["c44078.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","K04523|3.92734e-104|gra:105787400|K04523 ubiquilin | (RefSeq) ubiquitin domain-containing protein DSK2b-like","[OR]","--","Ubiquitin family;; Ubiquitin-2 like Rad60 SUMO-like;; UBA/TS-N domain","Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana OX=3702 GN=DSK2A PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","Ubiquilin [Gossypium arboreum]"]
["c31353.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","hypothetical protein KK1_034411 [Cajanus cajan]"]
["c54530.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111300745 [Durio zibethinus]"]
["c27211.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: intracellular (GO:0005622);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphatidylinositol phosphorylation (GO:0046854);; Biological Process: phosphatidylinositol-mediated signaling (GO:0048015);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ziziphus jujuba]"]
["c92524.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast (GO:0009507);; Biological Process: lytic vacuole organization (GO:0080171);; ","--","[S]","Function unknown ","--","--","S","Function unknown","A-kinase anchor-like protein [Arabidopsis thaliana] "]
["c24020.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC109226149 [Nicotiana attenuata]"]
["c3011.graph_c0","--","--","Cellular Component: protein storage vacuole (GO:0000326);; Molecular Function: protein binding (GO:0005515);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein targeting to vacuole (GO:0006623);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: protein storage vacuole membrane (GO:0032586);; ","--","--","--","C2 domain","Protein SRC2 homolog OS=Arabidopsis thaliana OX=3702 GN=SRC2 PE=1 SV=1","S","Function unknown","SRC2 [Arabidopsis thaliana]"]
["c71426.graph_c0","--","--","Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","--","[R]","General function prediction only ","Iron-binding zinc finger CDGSH type","CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702 GN=NEET PE=1 SV=1","S","Function unknown","hypothetical protein KFL_000120180 [Klebsormidium nitens]"]
["c20299.graph_c0","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: transcription regulatory region DNA binding (GO:0044212);; ","--","--","--","Dof domain, zinc finger","Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana OX=3702 GN=DOF3.7 PE=1 SV=2","S","Function unknown","PREDICTED: dof zinc finger protein DOF4.6 isoform X3 [Gossypium raimondii]"]
["c44443.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","S","Function unknown","hypothetical protein CFOL_v3_17895 [Cephalotus follicularis]"]
["c57291.graph_c0","--","--","Biological Process: single-organism process (GO:0044699);; ","--","--","--","--","--","--","--","WCRKC thioredoxin 2 [Theobroma cacao]"]
["c53586.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","K13448|5.14088e-22|gra:105802104|K13448 calcium-binding protein CML | (RefSeq) putative calcium-binding protein CML19","--","--","EF hand;; EF-hand domain pair;; EF-hand domain pair;; EF-hand domain;; EF hand","--","DTZ","--","PREDICTED: putative calcium-binding protein CML19 [Gossypium hirsutum]"]
["c43171.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|0|gra:105770210|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) protein NRT1/ PTR FAMILY 8.1-like","[E]","Amino acid transport and metabolism ","POT family;; Major Facilitator Superfamily;; Thioesterase superfamily","Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1","E","Amino acid transport and metabolism","protein NRT1/ PTR FAMILY 8.1-like isoform X1 [Durio zibethinus]"]
["c44868.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: transcription activator MSS11 [Gossypium raimondii] "]
["c21752.graph_c0","--","--","--","--","--","--","Alpha-2-macroglobulin family N-terminal region","--","--","--","--"]
["c39430.graph_c0","--","--","--","--","--","--","--","--","L","Replication, recombination and repair","uncharacterized protein LOC111274324 [Durio zibethinus]"]
["c3570.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108483539 [Gossypium arboreum]"]
["c29642.graph_c0","[R]","General function prediction only ","Cellular Component: plastoglobule (GO:0010287);; ","--","--","--","--","DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g52590 PE=2 SV=1","S","Function unknown","PREDICTED: DCC family protein At1g52590, chloroplastic, partial [Gossypium hirsutum]"]
["c18497.graph_c0","--","--","--","K03626|8.80116e-08|sbi:SORBI_01g035320|K03626 nascent polypeptide-associated complex subunit alpha | (RefSeq) SORBIDRAFT_01g035320, Sb01g035320; hypothetical protein","[K]","Transcription ","NAC domain","Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12390 PE=1 SV=1","K","Transcription","nascent polypeptide-associated complex subunit alpha-like protein 1 [Sorghum bicolor] "]
["c38574.graph_c1","--","--","--","--","--","--","--","Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=2","S","Function unknown","PREDICTED: uncharacterized protein LOC108470813 isoform X3 [Gossypium arboreum]"]
["c53331.graph_c0","--","--","--","K12613|1.48895e-08|gra:105776314|K12613 mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] | (RefSeq) mRNA-decapping enzyme subunit 2","--","--","--","--","L","Replication, recombination and repair","PREDICTED: mRNA-decapping enzyme subunit 2 [Gossypium hirsutum] "]
["c46365.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: cytoplasm (GO:0005737);; Molecular Function: 3-deoxy-8-phosphooctulonate synthase activity (GO:0008676);; Biological Process: biosynthetic process (GO:0009058);; ","K01627|3.9149e-118|tcc:TCM_026967|K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] | (RefSeq) Aldolase-type TIM barrel family protein isoform 1","--","--","DAHP synthetase I family","2-dehydro-3-deoxyphosphooctonate aldolase 1 OS=Arabidopsis thaliana OX=3702 GN=KDSA1 PE=1 SV=2","M","Cell wall/membrane/envelope biogenesis","2-dehydro-3-deoxyphosphooctonate aldolase-like [Durio zibethinus] "]
["c88463.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: endocytosis (GO:0006897);; Biological Process: regulation of cell shape (GO:0008360);; Biological Process: Wnt signaling pathway (GO:0016055);; Biological Process: peptidyl-serine phosphorylation (GO:0018105);; ","K02218|6.12673e-41|ppp:PHYPADRAFT_141762|K02218 casein kinase 1 [EC:2.7.11.1] | (RefSeq) hypothetical protein","[T]","Signal transduction mechanisms ","--","Casein kinase 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CKL2 PE=1 SV=1","T","Signal transduction mechanisms","casein kinase 1-like protein 1 isoform X3 [Durio zibethinus]"]
["c31636.graph_c0","--","--","--","--","[G]","Carbohydrate transport and metabolism ","--","Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica OX=39947 GN=PIP2-6 PE=2 SV=2","--","--","--"]
["c22025.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","[GC]","--","UDP-glucoronosyl and UDP-glucosyl transferase","UDP-glycosyltransferase 91A1 OS=Arabidopsis thaliana OX=3702 GN=UGT91A1 PE=2 SV=1","S","Function unknown","putative UDP-rhamnose:rhamnosyltransferase 1 [Durio zibethinus]"]
["c38473.graph_c0","--","--","--","--","--","--","PAR1 protein","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107958026 [Gossypium hirsutum] "]
["c69788.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD01439 [Gossypium barbadense]"]
["c49826.graph_c0","--","--","--","K15164|0|gra:105792739|K15164 mediator of RNA polymerase II transcription subunit 13 | (RefSeq) mediator of RNA polymerase II transcription subunit 13","[I]","Lipid transport and metabolism ","Mediator complex subunit 13 C-terminal","Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis thaliana OX=3702 GN=MED13 PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein GOBAR_DD26108 [Gossypium barbadense]"]
["c8893.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Molecular Function: polysaccharide binding (GO:0030247);; ","--","--","--","Inositol monophosphatase family","Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana OX=3702 GN=WAKL8 PE=2 SV=1","T","Signal transduction mechanisms","wall-associated receptor kinase 2 [Sesamum indicum]"]
["c15828.graph_c0","--","--","Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221);; Biological Process: cell cycle (GO:0007049);; Biological Process: positive regulation of Notch signaling pathway (GO:0045747);; ","--","[R]","General function prediction only ","Enhancer of rudimentary","Enhancer of rudimentary homolog OS=Arabidopsis thaliana OX=3702 GN=At5g10810 PE=3 SV=1","S","Function unknown","hypothetical protein B456_010G119400 [Gossypium raimondii]"]
["c24665.graph_c0","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1","S","Function unknown","cyclin-dependent protein kinase inhibitor SMR1-like [Durio zibethinus]"]
["c64439.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1","S","Function unknown","hypothetical protein SOVF_175280, partial [Spinacia oleracea]"]
["c70935.graph_c0","--","--","--","--","--","--","Collagen triple helix repeat (20 copies)","--","--","--","--"]
["c45503.graph_c0","[K]","Transcription ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein tyrosine kinase;; Protein kinase domain;; Leucine Rich repeats (2 copies);; Leucine rich repeat;; Leucine Rich Repeat","Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana OX=3702 GN=At5g10020 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: probable inactive receptor kinase At5g10020 [Gossypium raimondii] "]
["c45565.graph_c0","--","--","--","--","--","--","Replication protein A interacting C-terminal;; Replication protein A interacting middle;; Replication protein A interacting C-terminal","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108452857 isoform X3 [Gossypium arboreum]"]
["c28115.graph_c0","--","--","--","K18812|3.01108e-114|gra:105794919|K18812 cyclin D6, plant | (RefSeq) putative cyclin-D6-1","[D]","Cell cycle control, cell division, chromosome partitioning ","Cyclin, N-terminal domain;; Cyclin, C-terminal domain","Putative cyclin-D6-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD6-1 PE=3 SV=1","D","Cell cycle control, cell division, chromosome partitioning","PREDICTED: putative cyclin-D6-1 isoform X1 [Gossypium raimondii]"]
["c60055.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_037317 isoform 1 [Theobroma cacao]"]
["c45719.graph_c0","--","--","--","K10357|0|gra:105804666|K10357 myosin V | (RefSeq) myosin-9","[Z]","Cytoskeleton ","Myosin head (motor domain);; Myosin N-terminal SH3-like domain","Myosin-11 OS=Arabidopsis thaliana OX=3702 GN=XI-E PE=3 SV=1","Z","Cytoskeleton","PREDICTED: myosin-9 [Gossypium raimondii] "]
["c44445.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","TPL-binding domain in jasmonate signalling;; Agenet domain;; PHD-finger","Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1","S","Function unknown","LOW QUALITY PROTEIN: uncharacterized protein LOC111303744 [Durio zibethinus]"]
["c82244.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853);; Cellular Component: cytosol (GO:0005829);; Biological Process: protoporphyrinogen IX biosynthetic process (GO:0006782);; ","K01599|3.86521e-17|mpp:MICPUCDRAFT_64427|K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] | (RefSeq) HEME4; uroporphyrinogen decarboxylase","[H]","Coenzyme transport and metabolism ","Uroporphyrinogen decarboxylase (URO-D)","Uroporphyrinogen decarboxylase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0622300 PE=2 SV=1","H","Coenzyme transport and metabolism","uroporphyrinogen decarboxylase [Lobosporangium transversale] "]
["c29638.graph_c0","--","--","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana OX=3702 GN=At5g14450 PE=2 SV=1","--","--","PREDICTED: GDSL esterase/lipase At5g14450-like isoform X3 [Gossypium arboreum]"]
["c26465.graph_c0","--","--","--","--","--","--","Caulimovirus viroplasmin","--","--","--","hypothetical protein POPTR_0017s05540g [Populus trichocarpa]"]
["c36693.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Gossypium hirsutum]"]
["c42028.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14484|2.24447e-32|gra:105792325|K14484 auxin-responsive protein IAA | (RefSeq) auxin-responsive protein IAA11-like","--","--","AUX/IAA family","Auxin-responsive protein IAA13 OS=Arabidopsis thaliana OX=3702 GN=IAA13 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_DD10257 [Gossypium barbadense]"]
["c76467.graph_c0","[R]","General function prediction only ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: hydrolase activity (GO:0016787);; ","K03235|3.84273e-12|vcn:VOLCADRAFT_72263|K03235 elongation factor 3 | (RefSeq) hypothetical protein","[R]","General function prediction only ","ABC transporter","ABC transporter F family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCF1 PE=2 SV=1","S","Function unknown","ABC transporter F family member 3 [Choanephora cucurbitarum]"]
["c57217.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Leucine rich repeat N-terminal domain","Receptor-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=RLP6 PE=3 SV=1","S","Function unknown","PREDICTED: receptor-like protein 12 isoform X1 [Gossypium raimondii]"]
["c29518.graph_c0","--","--","--","--","--","--","Cleavage site for pathogenic type III effector avirulence factor Avr","RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1","S","Function unknown","hypothetical protein B456_006G270200 [Gossypium raimondii]"]
["c68995.graph_c0","--","--","--","--","--","--","--","--","--","--","unknown [Glycine max]"]
["c48301.graph_c0","--","--","--","K14011|4.07013e-22|gra:105785650|K14011 UBX domain-containing protein 6 | (RefSeq) plant UBX domain-containing protein 2-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUX2 PE=1 SV=2","S","Function unknown","PREDICTED: plant UBX domain-containing protein 2-like [Gossypium raimondii] "]
["c62799.graph_c0","[K]","Transcription ","Molecular Function: binding (GO:0005488);; ","--","[J]","Translation, ribosomal structure and biogenesis ","'Cold-shock' DNA-binding domain","--","K","Transcription","cold-shock transcription factor [Phycomyces blakesleeanus NRRL 1555(-)] "]
["c54251.graph_c0","--","--","Cellular Component: Golgi membrane (GO:0000139);; Biological Process: protein glycosylation (GO:0006486);; Molecular Function: galactosyltransferase activity (GO:0008378);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[G]","Carbohydrate transport and metabolism ","--","--","S","Function unknown","Galactosyltransferase family protein [Theobroma cacao]"]
["c45389.graph_c0","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: kinesin complex (GO:0005871);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Z]","Cytoskeleton ","Kinesin motor domain;; Microtubule binding","Kinesin-like protein KIN-14E OS=Arabidopsis thaliana OX=3702 GN=KIN14E PE=1 SV=1","Z","Cytoskeleton","PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Gossypium hirsutum] "]
["c78171.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","BT1 family","Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana OX=3702 GN=At5g10820 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: probable folate-biopterin transporter 6 [Theobroma cacao]"]
["c18877.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA24544 [Gossypium barbadense]"]
["c39765.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27730 PE=1 SV=1","S","Function unknown","uncharacterized protein At2g27730, mitochondrial-like [Durio zibethinus]"]
["c4939.graph_c1","[C]","Energy production and conversion ","Molecular Function: malate dehydrogenase activity (GO:0016615);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; Biological Process: carboxylic acid metabolic process (GO:0019752);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00026|1.64573e-60|pxb:103927940|K00026 malate dehydrogenase [EC:1.1.1.37] | (RefSeq) malate dehydrogenase, mitochondrial","[C]","Energy production and conversion ","lactate/malate dehydrogenase, alpha/beta C-terminal domain","Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g53240 PE=1 SV=1","C","Energy production and conversion","malate dehydrogenase [Symphyocladia latiuscula]"]
["c44638.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: aminopeptidase activity (GO:0004177);; Biological Process: protein methylation (GO:0006479);; Biological Process: proteolysis (GO:0006508);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: manganese ion binding (GO:0030145);; ","K14213|0|aip:107633334|K14213 Xaa-Pro dipeptidase [EC:3.4.13.9] | (RefSeq) xaa-Pro dipeptidase","[R]","General function prediction only ","Metallopeptidase family M24;; Aminopeptidase P, N-terminal domain","Intermediate cleaving peptidase 55, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ICP55 PE=1 SV=1","E","Amino acid transport and metabolism","LOW QUALITY PROTEIN: xaa-Pro dipeptidase [Arachis ipaensis]"]
["c73891.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein VITISV_023209 [Vitis vinifera]"]
["c74848.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K04733|1.02853e-12|gra:105783412|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase At5g01020-like","[T]","Signal transduction mechanisms ","--","Probable serine/threonine-protein kinase PBL17 OS=Arabidopsis thaliana OX=3702 GN=PBL17 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein CCACVL1_07299 [Corchorus capsularis]"]
["c42380.graph_c0","[K]","Transcription ","Molecular Function: RNA binding (GO:0003723);; Biological Process: DNA-templated transcription, termination (GO:0006353);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: chloroplast (GO:0009507);; ","--","--","--","NusB family","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108468846 [Gossypium arboreum] "]
["c32969.graph_c0","--","--","--","K04733|7.85251e-115|tcc:TCM_030104|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) Cysteine-rich RLK 30, putative","--","--","Salt stress response/antifungal","Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana OX=3702 GN=CRK14 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein MANES_16G014600 [Manihot esculenta] "]
["c26032.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111312251 isoform X3 [Durio zibethinus]"]
["c4372.graph_c0","--","--","Cellular Component: intracellular part (GO:0044424);; ","K02873|2.78946e-28|gra:105790543|K02873 large subunit ribosomal protein L13e | (RefSeq) 60S ribosomal protein L13-2","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L13e","60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","ribosomal protein L13e [Mortierella elongata AG-77]"]
["c41740.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","DVL family","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105771200 [Gossypium raimondii] "]
["c37851.graph_c2","--","--","--","--","--","--","Retroviral aspartyl protease;; Retrotransposon gag protein;; gag-polyprotein putative aspartyl protease;; Aspartyl protease","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]"]
["c41431.graph_c0","[R]","General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; ","K10532|1.02851e-180|gra:105787270|K10532 heparan-alpha-glucosaminide N-acetyltransferase [EC:2.3.1.78] | (RefSeq) heparan-alpha-glucosaminide N-acetyltransferase-like","[S]","Function unknown ","Protein of unknown function (DUF1624);; Domain of unknown function (DUF5009)","--","S","Function unknown","hypothetical protein GOBAR_DD06157 [Gossypium barbadense]"]
["c88732.graph_c0","--","--","Molecular Function: voltage-gated potassium channel activity (GO:0005249);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: potassium ion transmembrane transport (GO:0071805);; ","--","--","--","--","--","--","--","PREDICTED: potassium channel KAT3 [Gossypium arboreum]"]
["c57588.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Molecular Function: lyase activity (GO:0016829);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein At5g48480-like [Durio zibethinus]"]
["c52622.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|0|gra:105779778|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 55-like","--","--","Peroxidase","Peroxidase 55 OS=Arabidopsis thaliana OX=3702 GN=PER55 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein B456_012G086300 [Gossypium raimondii]"]
["c44432.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Molecular Function: snoRNA binding (GO:0030515);; ","K14557|0|gra:105768579|K14557 U3 small nucleolar RNA-associated protein 6 | (RefSeq) U3 small nucleolar RNA-associated protein 6 homolog","[R]","General function prediction only ","U3 small nucleolar RNA-associated protein 6;; Tetratricopeptide repeat;; Aminomethyltransferase folate-binding domain;; Glycine cleavage T-protein C-terminal barrel domain","Aminomethyltransferase, mitochondrial OS=Solanum tuberosum OX=4113 GN=GDCST PE=2 SV=1","S","Function unknown","hypothetical protein B456_009G179800 [Gossypium raimondii]"]
["c60668.graph_c0","--","--","--","--","--","--","--","--","--","--","transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Durio zibethinus]"]
["c20112.graph_c0","--","--","Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; Biological Process: single-organism process (GO:0044699);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD09771 [Gossypium barbadense]"]
["c63778.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: protein dephosphorylation (GO:0006470);; ","K04382|4.43359e-84|gra:105782100|K04382 serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] | (RefSeq) serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like","[T]","Signal transduction mechanisms ","Calcineurin-like phosphoesterase","Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. japonica OX=39947 GN=PP2A2 PE=2 SV=1","T","Signal transduction mechanisms","serine/threonine-protein phosphatase, partial [Polianthes tuberosa]"]
["c45538.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: glucose import (GO:0046323);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: glucose transmembrane transport (GO:1904659);; ","K08145|1.65993e-108|gra:105802192|K08145 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8 | (RefSeq) sugar transporter ERD6-like 6","[R]","General function prediction only ","Sugar (and other) transporter","Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana OX=3702 GN=At1g75220 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: sugar transporter ERD6-like 6 [Gossypium raimondii] "]
["c41199.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Proton pump-interactor BIP131 OS=Oryza sativa subsp. japonica OX=39947 GN=BIP131 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105767322 [Gossypium raimondii]"]
["c32383.graph_c2","--","--","--","K03255|8.40331e-74|gra:105773049|K03255 protein TIF31 | (RefSeq) clustered mitochondria protein homolog","[R]","General function prediction only ","Mitochondrial function, CLU-N-term","Protein TSS OS=Arabidopsis thaliana OX=3702 GN=TSS PE=1 SV=1","S","Function unknown","Tetratricopeptide-like helical [Corchorus olitorius]"]
["c16455.graph_c1","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","--","--","--","chromatin structure-remodeling complex protein SYD [Herrania umbratica]"]
["c16205.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF668);; Domain of unknown function (DUF3475)","--","S","Function unknown","uncharacterized protein LOC111311765 [Durio zibethinus]"]
["c94683.graph_c0","--","--","--","--","[A]","RNA processing and modification ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","--","S","Function unknown","--"]
["c80087.graph_c0","[R]","General function prediction only ","Molecular Function: L-serine ammonia-lyase activity (GO:0003941);; Molecular Function: L-threonine ammonia-lyase activity (GO:0004794);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: L-serine catabolic process (GO:0006565);; Biological Process: threonine catabolic process (GO:0006567);; Cellular Component: membrane (GO:0016020);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K01754|8.06867e-31|bpg:Bathy03g00160|K01754 threonine dehydratase [EC:4.3.1.19] | (RefSeq) threonine dehydratase","[E]","Amino acid transport and metabolism ","Pyridoxal-phosphate dependent enzyme","Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum OX=4081 GN=TD PE=1 SV=1","E","Amino acid transport and metabolism","threonine dehydratase catabolic putative [Albugo laibachii Nc14]"]
["c29782.graph_c0","[R]","General function prediction only ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Cellular Component: cell (GO:0005623);; Biological Process: protein dephosphorylation (GO:0006470);; Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; Biological Process: cell redox homeostasis (GO:0045454);; ","--","[T]","Signal transduction mechanisms ","NB-ARC domain","Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RPP13L4 PE=1 SV=2","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: disease resistance RPP13-like protein 4 [Gossypium arboreum]"]
["c75911.graph_c0","--","--","--","--","[F]","Nucleotide transport and metabolism ","--","--","F","Nucleotide transport and metabolism","P-loop containing nucleoside triphosphate hydrolase protein [Basidiobolus meristosporus CBS 931.73]"]
["c95466.graph_c0","--","--","Molecular Function: lipase activity (GO:0016298);; Biological Process: anion homeostasis (GO:0055081);; Biological Process: lipid homeostasis (GO:0055088);; ","--","--","--","--","--","--","--","Alpha/beta-Hydrolases superfamily protein isoform 2 [Theobroma cacao]"]
["c71970.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: D-gluconate metabolic process (GO:0019521);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00033|1.20028e-51|gsl:Gasu_15770|K00033 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343] | (RefSeq) 6-phosphogluconate dehydrogenase","[G]","Carbohydrate transport and metabolism ","6-phosphogluconate dehydrogenase, C-terminal domain","6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea OX=3562 GN=pgdC PE=1 SV=1","G","Carbohydrate transport and metabolism","6-Phosphogluconate dehydrogenase, partial [Basidiobolus meristosporus CBS 931.73]"]
["c45386.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Molecular Function: microtubule-severing ATPase activity (GO:0008568);; Biological Process: cytoplasmic microtubule organization (GO:0031122);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Putative AAA domain-containing protein C24B10.10c [Glycine soja]"]
["c81223.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","--","--","PREDICTED: serine-rich adhesin for platelets-like [Gossypium hirsutum] "]
["c90079.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Tropomyosin;; Tropomyosin like","--","Z","Cytoskeleton","--"]
["c36564.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; Domain of unknown function (DUF4283);; zinc-binding in reverse transcriptase","Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1","S","Function unknown","uncharacterized protein LOC109841705 [Asparagus officinalis]"]
["c75578.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: F-box protein At5g07610-like [Gossypium hirsutum]"]
["c24700.graph_c1","[T]","Signal transduction mechanisms ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein tyrosine kinase;; Protein kinase domain;; Salt stress response/antifungal","Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CRK25 PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: cysteine-rich receptor-like protein kinase 10 [Gossypium hirsutum]"]
["c22986.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: transferase activity (GO:0016740);; ","K00799|2.51848e-89|gra:105766256|K00799 glutathione S-transferase [EC:2.5.1.18] | (RefSeq) probable glutathione S-transferase","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, N-terminal domain","Probable glutathione S-transferase parC OS=Nicotiana tabacum OX=4097 GN=PARC PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: probable glutathione S-transferase [Gossypium hirsutum] "]
["c43281.graph_c0","--","--","Molecular Function: NAD+ ADP-ribosyltransferase activity (GO:0003950);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105784443 [Gossypium raimondii]"]
["c33169.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Family of unknown function (DUF716)","--","S","Function unknown","PREDICTED: transmembrane protein 45A-like [Gossypium arboreum] "]
["c31165.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF4228)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105800970 [Gossypium raimondii] "]
["c16107.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity (GO:0016740);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Cellular Component: cytoplasmic part (GO:0044444);; ","K12666|6.6433e-35|csl:COCSUDRAFT_27490|K12666 oligosaccharyltransferase complex subunit alpha (ribophorin I) | (RefSeq) Ribophorin I","[O]","Posttranslational modification, protein turnover, chaperones ","Ribophorin I","Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Oryza sativa subsp. japonica OX=39947 GN=OST1A PE=2 SV=1","S","Function unknown","unnamed protein product [Albugo candida]"]
["c30979.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal small subunit export from nucleus (GO:0000056);; Biological Process: DNA catabolic process, endonucleolytic (GO:0000737);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906);; Biological Process: rRNA export from nucleus (GO:0006407);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Cellular Component: preribosome, small subunit precursor (GO:0030688);; ","K02985|8.32489e-131|cit:102611929|K02985 small subunit ribosomal protein S3e | (RefSeq) 40S ribosomal protein S3-3","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S3, C-terminal domain;; KH domain","40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S3-A [Spizellomyces punctatus DAOM BR117] "]
["c5698.graph_c0","--","--","--","--","[K]","Transcription ","--","--","K","Transcription","--"]
["c39764.graph_c0","--","--","--","--","--","--","--","TNF receptor-associated factor homolog 1b OS=Arabidopsis thaliana OX=3702 GN=TRAF1B PE=1 SV=1","S","Function unknown","TNF receptor-associated factor homolog 1b isoform X2 [Citrus clementina]"]
["c53116.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD14419 [Gossypium barbadense]"]
["c55748.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","PMR5 N terminal Domain;; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p","Protein trichome birefringence-like 33 OS=Arabidopsis thaliana OX=3702 GN=TBL33 PE=2 SV=1","--","--","hypothetical protein B456_011G290400 [Gossypium raimondii]"]
["c63986.graph_c0","--","--","Biological Process: resolution of meiotic recombination intermediates (GO:0000712);; Biological Process: male meiotic nuclear division (GO:0007140);; Biological Process: female meiotic nuclear division (GO:0007143);; Cellular Component: chloroplast (GO:0009507);; ","--","[S]","Function unknown ","--","TPR repeat-containing protein ZIP4 OS=Arabidopsis thaliana OX=3702 GN=ZIP4 PE=2 SV=1","S","Function unknown","PREDICTED: TPR repeat-containing protein ZIP4 [Gossypium arboreum]"]
["c3892.graph_c1","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD36082 [Gossypium barbadense]"]
["c43924.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","alpha/beta hydrolase fold;; Serine aminopeptidase, S33;; Alpha/beta hydrolase family","--","S","Function unknown","uncharacterized protein LOC111291597 [Durio zibethinus]"]
["c46700.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","--","K08657|0|gra:105802673|K08657 taspase, threonine aspartase, 1 [EC:3.4.25.-] | (RefSeq) putative threonine aspartase","[E]","Amino acid transport and metabolism ","Asparaginase;; short chain dehydrogenase;; Enoyl-(Acyl carrier protein) reductase;; KR domain;; NAD dependent epimerase/dehydratase family;; Enoyl-(Acyl carrier protein) reductase;; Asparaginase","Putative threonine aspartase OS=Arabidopsis thaliana OX=3702 GN=At4g00590 PE=2 SV=3","E","Amino acid transport and metabolism","PREDICTED: putative threonine aspartase isoform X1 [Gossypium raimondii] "]
["c45636.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: cysteine synthase activity (GO:0004124);; Biological Process: cysteine biosynthetic process from serine (GO:0006535);; Molecular Function: transferase activity (GO:0016740);; ","K01738|1.63414e-129|tcc:TCM_026413|K01738 cysteine synthase A [EC:2.5.1.47] | (RefSeq) Cysteine synthase isoform 1","[E]","Amino acid transport and metabolism ","Pyridoxal-phosphate dependent enzyme","Cysteine synthase OS=Spinacia oleracea OX=3562 PE=1 SV=1","E","Amino acid transport and metabolism","cysteine synthase [Durio zibethinus] "]
["c76689.graph_c0","--","--","Cellular Component: nuclear pore (GO:0005643);; Biological Process: nucleocytoplasmic transport (GO:0006913);; Molecular Function: structural constituent of nuclear pore (GO:0017056);; ","--","--","--","--","--","S","Function unknown","hypothetical protein BofuT4_P036940.1 [Botrytis cinerea T4] "]
["c59173.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cell wall (GO:0005618);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall biogenesis (GO:0042546);; Cellular Component: apoplast (GO:0048046);; Biological Process: cell wall organization (GO:0071555);; ","K08235|2.21978e-17|cic:CICLE_v10028851mg|K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] | (RefSeq) hypothetical protein","--","--","--","Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis OX=3914 GN=XTHB PE=2 SV=1","G","Carbohydrate transport and metabolism","putative xyloglucan endotransglucosylase/hydrolase B [Gossypium arboreum]"]
["c29215.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: protein folding (GO:0006457);; Biological Process: response to stress (GO:0006950);; Molecular Function: unfolded protein binding (GO:0051082);; ","K09487|4.29435e-24|gra:105784225|K09487 heat shock protein 90kDa beta | (RefSeq) endoplasmin homolog","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp90 protein","Endoplasmin homolog OS=Catharanthus roseus OX=4058 GN=HSP90 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","endoplasmin homolog [Durio zibethinus]"]
["c76519.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: translational elongation (GO:0006414);; Cellular Component: cell surface (GO:0009986);; Cellular Component: yeast-form cell wall (GO:0030445);; Cellular Component: hyphal cell wall (GO:0030446);; Biological Process: interaction with host (GO:0051701);; ","K03231|4.05135e-92|gsl:Gasu_19840|K03231 elongation factor 1-alpha | (RefSeq) elongation factor EF-1 alpha subunit","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor Tu C-terminal domain","Elongation factor 1-alpha C OS=Porphyra purpurea OX=2787 GN=TEF-C PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Elongation factor 1-alpha, partial [Smittium culicis] "]
["c31207.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111277961 isoform X2 [Durio zibethinus]"]
["c47257.graph_c0","--","--","Cellular Component: Swr1 complex (GO:0000812);; Molecular Function: DNA binding (GO:0003677);; Biological Process: DNA repair (GO:0006281);; Biological Process: chromatin remodeling (GO:0006338);; Cellular Component: NuA4 histone acetyltransferase complex (GO:0035267);; Biological Process: histone H4 acetylation (GO:0043967);; Biological Process: histone H2A acetylation (GO:0043968);; Biological Process: negative regulation of transcription, DNA-templated (GO:0045892);; ","K11324|0|gra:105791472|K11324 DNA methyltransferase 1-associated protein 1 | (RefSeq) SWR1-complex protein 4","[BK]","--","DNA methyltransferase 1-associated protein 1 (DMAP1)","SWR1-complex protein 4 OS=Arabidopsis thaliana OX=3702 GN=SWC4 PE=1 SV=1","K","Transcription","PREDICTED: SWR1-complex protein 4 isoform X1 [Gossypium raimondii] "]
["c34318.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: voltage-gated potassium channel activity (GO:0005249);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: high-affinity potassium ion import (GO:0010163);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[PT]","--","Ion transport protein;; Ion channel;; KHA, dimerisation domain of potassium ion channel","Potassium channel KAT3 OS=Arabidopsis thaliana OX=3702 GN=KAT3 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein CCACVL1_23217 [Corchorus capsularis]"]
["c51735.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: transferase activity (GO:0016740);; ","K00799|1.27033e-121|tcc:TCM_010044|K00799 glutathione S-transferase [EC:2.5.1.18] | (RefSeq) Glutathione S-transferase family protein","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, C-terminal domain","Glutathione S-transferase U17 OS=Arabidopsis thaliana OX=3702 GN=GSTU17 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","glutathione S-transferase U17-like [Gossypium hirsutum] "]
["c78627.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|3.86646e-25|gra:105764013|K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] | (RefSeq) ABC transporter B family member 4-like","--","--","--","--","V","Defense mechanisms","PREDICTED: ABC transporter B family member 4-like [Gossypium raimondii] "]
["c4636.graph_c0","--","--","Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Biological Process: RNA-dependent DNA biosynthetic process (GO:0006278);; ","--","[R]","General function prediction only ","--","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Theobroma cacao]"]
["c49691.graph_c0","[P]","Inorganic ion transport and metabolism ","--","K01534|0|gra:105768832|K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5] | (RefSeq) putative inactive cadmium/zinc-transporting ATPase HMA3","[P]","Inorganic ion transport and metabolism ","E1-E2 ATPase;; haloacid dehalogenase-like hydrolase","Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana OX=3702 GN=HMA2 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Gossypium hirsutum]"]
["c25667.graph_c0","--","--","Molecular Function: calmodulin binding (GO:0005516);; ","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein DDB_G0286299 [Gossypium arboreum] "]
["c46400.graph_c0","--","--","Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: small-subunit processome (GO:0032040);; ","K14765|0|gra:105769448|K14765 U3 small nucleolar ribonucleoprotein protein LCP5 | (RefSeq) neuroguidin","[A]","RNA processing and modification ","Sas10/Utp3/C1D family;; CRT-like, chloroquine-resistance transporter-like;; CRT-like, chloroquine-resistance transporter-like","Protein CLT2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLT2 PE=2 SV=1","S","Function unknown","PREDICTED: neuroguidin [Gossypium arboreum] "]
["c6381.graph_c0","[R]","General function prediction only ","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cellular bud neck (GO:0005935);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","K07208|1.18676e-20|gsl:Gasu_37740|K07208 Ras homolog enriched in brain | (RefSeq) small GTP-binding protein of Ras family","[R]","General function prediction only ","Ras family;; Ras of Complex, Roc, domain of DAPkinase;; ADP-ribosylation factor family","GTP-binding protein yptV2 OS=Volvox carteri OX=3067 GN=YPTV2 PE=3 SV=1","S","Function unknown","hypothetical protein M427DRAFT_177349 [Gonapodya prolifera JEL478]"]
["c40532.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: photosystem II oxygen evolving complex (GO:0009654);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: extrinsic component of membrane (GO:0019898);; ","--","--","--","PsbP","Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2","S","Function unknown","Photosystem II PsbP, oxygen evolving complex [Corchorus olitorius]"]
["c54440.graph_c0","--","--","Cellular Component: cell (GO:0005623);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: oxidation-reduction process (GO:0055114);; ","K17479|2.54726e-126|gra:105782704|K17479 glutaredoxin domain-containing cysteine-rich protein 1 | (RefSeq) uncharacterized protein At5g39865-like","[O]","Posttranslational modification, protein turnover, chaperones ","Glutaredoxin","Uncharacterized protein At5g39865 OS=Arabidopsis thaliana OX=3702 GN=At5g39865 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA18907 [Gossypium barbadense]"]
["c93225.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CNYM01_02324 [Colletotrichum nymphaeae SA-01]"]
["c92327.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","S","Function unknown","--"]
["c23080.graph_c1","--","--","--","--","--","--","Double-stranded RNA binding motif","Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=DRB5 PE=1 SV=1","S","Function unknown","double-stranded RNA-binding protein 5, partial [Herrania umbratica]"]
["c88544.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: translational initiation (GO:0006413);; ","K02519|8.02308e-36|fve:101299274|K02519 translation initiation factor IF-2 | (RefSeq) translation initiation factor IF-2, chloroplastic","[J]","Translation, ribosomal structure and biogenesis ","--","Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=IF2CP PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: translation initiation factor IF-2, chloroplastic [Fragaria vesca subsp. vesca] "]
["c43558.graph_c0","[R]","General function prediction only ","Biological Process: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000463);; Biological Process: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000466);; Cellular Component: nucleoplasm (GO:0005654);; Cellular Component: preribosome, large subunit precursor (GO:0030687);; Molecular Function: ribonucleoprotein complex binding (GO:0043021);; Cellular Component: PeBoW complex (GO:0070545);; ","K14824|0|gra:105762587|K14824 ribosome biogenesis protein ERB1 | (RefSeq) ribosome biogenesis protein BOP1 homolog","[J]","Translation, ribosomal structure and biogenesis ","BOP1NT (NUC169) domain;; WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain","Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: ribosome biogenesis protein BOP1 homolog [Gossypium arboreum]"]
["c86117.graph_c0","[C]","Energy production and conversion ","Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137);; Molecular Function: FMN binding (GO:0010181);; Molecular Function: NAD binding (GO:0051287);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03942|2.29592e-39|bpg:Bathy02g02680|K03942 NADH dehydrogenase (ubiquinone) flavoprotein 1 [EC:1.6.5.3 1.6.99.3] | (RefSeq) NADH-ubiquinone oxidoreductase 51 kDa subunit","[C]","Energy production and conversion ","Respiratory-chain NADH dehydrogenase 51 Kd subunit","NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08530 PE=1 SV=1","C","Energy production and conversion","NADH dehydrogenase, partial [Micromonas sp. CCMP1195]"]
["c42102.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH1 PE=1 SV=1","S","Function unknown","PREDICTED: tetraspanin-18 [Theobroma cacao] "]
["c27539.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","K11446|8.72545e-47|tcc:TCM_026189|K11446 histone demethylase JARID1 [EC:1.14.11.-] | (RefSeq) Transcription factor jumonji family protein / zinc finger family protein isoform 1","[R]","General function prediction only ","--","Putative lysine-specific demethylase JMJ16 OS=Arabidopsis thaliana OX=3702 GN=JMJ16 PE=2 SV=1","S","Function unknown","PREDICTED: putative lysine-specific demethylase JMJ16 [Theobroma cacao] "]
["c28785.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","[S]","Function unknown ","Armadillo/beta-catenin-like repeat","U-box domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=PUB16 PE=2 SV=1","S","Function unknown","Armadillo [Corchorus olitorius]"]
["c6414.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Profilin","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c22077.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: cytosol (GO:0005829);; ","K02183|4.46992e-80|gra:105800697|K02183 calmodulin | (RefSeq) calmodulin-like","[T]","Signal transduction mechanisms ","EF hand;; EF-hand domain pair;; EF hand;; EF-hand domain;; EF-hand domain pair","Calcium-binding protein CP1 OS=Arabidopsis thaliana OX=3702 GN=CP1 PE=2 SV=1","DTZ","--","PREDICTED: calmodulin-like protein 3 [Theobroma cacao]"]
["c20093.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat N-terminal domain","LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana OX=3702 GN=GSO2 PE=1 SV=2","S","Function unknown","PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium arboreum] "]
["c34824.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","B3 DNA binding domain","B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1","S","Function unknown","PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 [Gossypium raimondii] "]
["c69482.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: NDR1/HIN1-like protein 12 [Theobroma cacao] "]
["c46540.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108469476 [Gossypium arboreum] "]
["c47016.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","--","Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=At1g21570 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein At1g21580-like isoform X1 [Gossypium hirsutum]"]
["c2972.graph_c0","--","--","--","--","[TZ]","--","--","Probable protein ABIL1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0622700 PE=2 SV=1","S","Function unknown","ABI-1-like 1 isoform 2 [Theobroma cacao]"]
["c47939.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K12580|0|gra:105782729|K12580 CCR4-NOT transcription complex subunit 3 | (RefSeq) general negative regulator of transcription subunit 3-like","[K]","Transcription ","Not1 N-terminal domain, CCR4-Not complex component;; NOT2 / NOT3 / NOT5 family","Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana OX=4100 GN=VIP2 PE=1 SV=1","K","Transcription","hypothetical protein B456_013G123000 [Gossypium raimondii]"]
["c29889.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","PPR repeat family;; Pentatricopeptide repeat domain;; PPR repeat;; Pentacotripeptide-repeat region of PRORP;; PPR repeat","Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105793982 [Gossypium raimondii]"]
["c30454.graph_c0","--","--","--","K03248|4.42385e-09|gra:105788784|K03248 translation initiation factor 3 subunit G | (RefSeq) eukaryotic translation initiation factor 3 subunit G-like","[J]","Translation, ribosomal structure and biogenesis ","--","--","J","Translation, ribosomal structure and biogenesis","PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Gossypium arboreum] "]
["c17253.graph_c0","--","--","--","--","[S]","Function unknown ","Carboxypeptidase activation peptide","--","E","Amino acid transport and metabolism","--"]
["c24078.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Nodulin-like","Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana OX=3702 GN=NFD4 PE=3 SV=1","S","Function unknown","PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Gossypium arboreum] "]
["c13095.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K05770|1.79068e-50|tcc:TCM_021206|K05770 benzodiazapine receptor | (RefSeq) TSPO(outer membrane tryptophan-rich sensory protein)-related, putative","--","--","TspO/MBR family","Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1","S","Function unknown","hypothetical protein B456_011G190200 [Gossypium raimondii]"]
["c34958.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: dTDP-glucose 4,6-dehydratase activity (GO:0008460);; Biological Process: nucleotide-sugar metabolic process (GO:0009225);; Molecular Function: UDP-glucose 4,6-dehydratase activity (GO:0050377);; ","K12450|2.06205e-106|cmo:103492941|K12450 UDP-glucose 4,6-dehydratase [EC:4.2.1.76] | (RefSeq) trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1","[G]","Carbohydrate transport and metabolism ","NAD dependent epimerase/dehydratase family;; RmlD substrate binding domain","Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana OX=3702 GN=RHM1 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","Putative rhamnose biosynthetic enzyme 1 [Glycine soja]"]
["c54035.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA39946 [Gossypium barbadense]"]
["c41576.graph_c0","--","--","--","K01522|1.70655e-20|gra:105777681|K01522 bis(5'-adenosyl)-triphosphatase [EC:3.6.1.29] | (RefSeq) bis(5'-adenosyl)-triphosphatase","[FR]","--","--","Bifunctional bis(5&apos;-adenosyl)-triphosphatase/adenylylsulfatase FHIT OS=Arabidopsis thaliana OX=3702 GN=FHIT PE=1 SV=1","FG","--","PREDICTED: bis(5&apos;-adenosyl)-triphosphatase-like isoform X2 [Gossypium hirsutum] "]
["c18483.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity (GO:0016740);; ","K20869|1.49213e-46|tcc:TCM_037168|K20869 putative beta-1,4-xylosyltransferase IRX9 [EC:2.4.2.-] | (RefSeq) Glycosyl transferase isoform 1","--","--","--","Probable glucuronosyltransferase Os01g0675500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0675500 PE=2 SV=1","S","Function unknown","probable beta-1,4-xylosyltransferase IRX9H [Herrania umbratica] "]
["c90422.graph_c0","--","--","--","--","--","--","--","--","G","Carbohydrate transport and metabolism","--"]
["c50829.graph_c0","--","--","--","--","--","--","Protein of unknown function, DUF573","STOREKEEPER protein OS=Solanum tuberosum OX=4113 GN=STK PE=2 SV=1","K","Transcription","STOREKEEPER protein-like [Durio zibethinus]"]
["c35464.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","--","S","Function unknown","PREDICTED: LINE-1 retrotransposable element ORF2 protein, partial [Vigna angularis]"]
["c44778.graph_c0","--","--","--","--","[R]","General function prediction only ","Chromo (CHRromatin Organisation MOdifier) domain","--","L","Replication, recombination and repair","reverse transcriptase [Corchorus capsularis]"]
["c5176.graph_c0","--","--","Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: water transport (GO:0006833);; Cellular Component: plant-type vacuole membrane (GO:0009705);; Biological Process: cellular water homeostasis (GO:0009992);; Molecular Function: water channel activity (GO:0015250);; Molecular Function: glycerol channel activity (GO:0015254);; Biological Process: glycerol transport (GO:0015793);; Biological Process: ion transmembrane transport (GO:0034220);; Cellular Component: central vacuole (GO:0042807);; ","K09873|8.86016e-17|gra:105774435|K09873 aquaporin TIP | (RefSeq) aquaporin TIP4-1","[G]","Carbohydrate transport and metabolism ","--","Aquaporin TIP4-1 OS=Arabidopsis thaliana OX=3702 GN=TIP4-1 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: aquaporin TIP4-1 [Gossypium arboreum] "]
["c32474.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: translational elongation (GO:0006414);; Cellular Component: cell surface (GO:0009986);; Cellular Component: yeast-form cell wall (GO:0030445);; Cellular Component: hyphal cell wall (GO:0030446);; Biological Process: interaction with host (GO:0051701);; ","K03231|4.53895e-82|cme:CYME_CMH226C|K03231 elongation factor 1-alpha | (RefSeq) eukaryotic translation elongation factor 1 alpha","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor Tu C-terminal domain","Elongation factor 1-alpha C OS=Porphyra purpurea OX=2787 GN=TEF-C PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Elongation factor 1-alpha, partial [Smittium culicis] "]
["c86442.graph_c0","--","--","--","--","--","--","--","--","L","Replication, recombination and repair","uncharacterized protein LOC110600596 [Manihot esculenta]"]
["c81771.graph_c0","--","--","--","--","[EG]","--","--","--","I","Lipid transport and metabolism","--"]
["c32407.graph_c1","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","GRAS domain family","Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CIGR1 PE=2 SV=1","K","Transcription","GRAS family transcription factor isoform 2 [Theobroma cacao]"]
["c47407.graph_c0","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","bHLH-MYC and R2R3-MYB transcription factors N-terminal;; Helix-loop-helix DNA-binding domain","Transcription factor bHLH3 OS=Arabidopsis thaliana OX=3702 GN=BHLH3 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor bHLH3 [Gossypium raimondii] "]
["c22969.graph_c1","[G]","Carbohydrate transport and metabolism ","Cellular Component: vacuole (GO:0005773);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: water transport (GO:0006833);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: cellular water homeostasis (GO:0009992);; Molecular Function: water channel activity (GO:0015250);; Molecular Function: glycerol channel activity (GO:0015254);; Biological Process: glycerol transport (GO:0015793);; Biological Process: ion transmembrane transport (GO:0034220);; ","K09872|4.21686e-27|gra:105777869|K09872 aquaporin PIP | (RefSeq) aquaporin PIP2-7-like","[G]","Carbohydrate transport and metabolism ","Major intrinsic protein","Aquaporin PIP2-7 OS=Arabidopsis thaliana OX=3702 GN=PIP2-7 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: aquaporin PIP2-7-like [Gossypium hirsutum] "]
["c43374.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","FAD dependent oxidoreductase;; Pyridine nucleotide-disulphide oxidoreductase;; Glucose inhibited division protein A;; Tryptophan halogenase;; NAD(P)-binding Rossmann-like domain;; Pyridine nucleotide-disulphide oxidoreductase","--","E","Amino acid transport and metabolism","PREDICTED: putative oxidoreductase TDA3 [Gossypium raimondii] "]
["c48079.graph_c1","[R]","General function prediction only ","Cellular Component: nucleus (GO:0005634);; Cellular Component: spindle (GO:0005819);; Biological Process: regulation of mitotic cell cycle (GO:0007346);; Cellular Component: cell plate (GO:0009504);; Biological Process: response to auxin (GO:0009733);; Biological Process: root meristem specification (GO:0010071);; Biological Process: cell differentiation (GO:0030154);; Biological Process: root cap development (GO:0048829);; Biological Process: cell division (GO:0051301);; ","K03350|0|gra:105768705|K03350 anaphase-promoting complex subunit 3 | (RefSeq) cell division cycle protein 27 homolog B","[D]","Cell cycle control, cell division, chromosome partitioning ","Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; TPR repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Anaphase-promoting complex, cyclosome, subunit 3;; ChAPs (Chs5p-Arf1p-binding proteins);; Anaphase-promoting complex, cyclosome, subunit 3;; Tetratricopeptide repeat","Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana OX=3702 GN=CDC27B PE=1 SV=1","S","Function unknown","PREDICTED: cell division cycle protein 27 homolog B-like [Gossypium arboreum] "]
["c40574.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","K01114|0|gra:105783855|K01114 phospholipase C [EC:3.1.4.3] | (RefSeq) non-specific phospholipase C3-like","--","--","Phosphoesterase family","Non-specific phospholipase C3 OS=Arabidopsis thaliana OX=3702 GN=NPC3 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein GOBAR_AA27316 [Gossypium barbadense]"]
["c59642.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CDL12_24210 [Handroanthus impetiginosus]"]
["c62256.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp20/alpha crystallin family","16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica OX=39947 GN=HSP16.6 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","--"]
["c24635.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","--","--","--","Cellulase (glycosyl hydrolase family 5)","--","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD25796 [Gossypium barbadense]"]
["c35648.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108469138 [Gossypium arboreum]"]
["c16904.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Nodulin-like","--","S","Function unknown","hypothetical protein GOBAR_AA31110 [Gossypium barbadense]"]
["c25975.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","transcription factor bHLH167-like [Durio zibethinus]"]
["c37348.graph_c1","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","RING-like zinc finger","E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","E3 ubiquitin-protein ligase Os04g0590900-like [Herrania umbratica]"]
["c84078.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|1.39171e-13|gmx:100815671|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) cationic peroxidase 1-like","--","--","--","Cationic peroxidase 1 OS=Arachis hypogaea OX=3818 GN=PNC1 PE=1 SV=2","--","--","hypothetical protein GOBAR_AA24246 [Gossypium barbadense]"]
["c47782.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: tRNA (cytosine-5-)-methyltransferase activity (GO:0016428);; Biological Process: tRNA methylation (GO:0030488);; ","K15334|0|gra:105787805|K15334 multisite-specific tRNA:(cytosine-C5)-methyltransferase [EC:2.1.1.202] | (RefSeq) tRNA (cytosine(34)-C(5))-methyltransferase","[J]","Translation, ribosomal structure and biogenesis ","16S rRNA methyltransferase RsmB/F","--","J","Translation, ribosomal structure and biogenesis","PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Gossypium arboreum] "]
["c54430.graph_c0","--","--","--","--","--","--","--","--","K","Transcription","PREDICTED: transcription factor bHLH137-like [Gossypium arboreum] "]
["c46081.graph_c0","--","--","Biological Process: defense response (GO:0006952);; ","--","--","--","Hs1pro-1 protein C-terminus;; Hs1pro-1 N-terminus","Nematode resistance protein-like HSPRO2 OS=Arabidopsis thaliana OX=3702 GN=HSPRO2 PE=1 SV=1","S","Function unknown","PREDICTED: nematode resistance protein-like HSPRO2 [Gossypium hirsutum]"]
["c57333.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00121|5.67823e-11|tcc:TCM_034337|K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] | (RefSeq) Zinc-binding alcohol dehydrogenase family protein isoform 1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana OX=3702 GN=At5g42250 PE=2 SV=1","C","Energy production and conversion","hypothetical protein B456_002G1197001 [Gossypium raimondii]"]
["c16883.graph_c0","--","--","--","--","--","--","--","40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1","--","--","putative ribosomal protein S17/S11, 40S ribosomal protein S11 [Helianthus annuus]"]
["c81861.graph_c0","--","--","--","--","[G]","Carbohydrate transport and metabolism ","--","--","G","Carbohydrate transport and metabolism","--"]
["c37590.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: iron ion binding (GO:0005506);; Biological Process: iron-sulfur cluster assembly (GO:0016226);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Scaffold protein Nfu/NifU N terminal;; NifU-like domain","NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NIFU4 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: nifU-like protein 4, mitochondrial [Gossypium raimondii] "]
["c38005.graph_c2","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA00588 [Gossypium barbadense]"]
["c45741.graph_c0","--","--","--","--","--","--","No apical meristem (NAM) protein","NAC domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=NAC017 PE=2 SV=1","S","Function unknown","PREDICTED: NAC domain-containing protein 17-like isoform X1 [Gossypium hirsutum]"]
["c38260.graph_c0","--","--","Cellular Component: nuclear envelope (GO:0005635);; ","--","--","--","--","--","--","--","PREDICTED: nuclear pore complex protein NUP1 [Theobroma cacao]"]
["c49961.graph_c0","--","--","--","--","[R]","General function prediction only ","gag-polypeptide of LTR copia-type;; Domain of unknown function (DUF4219)","--","S","Function unknown","DUF4219 domain-containing protein/UBN2 domain-containing protein [Cephalotus follicularis]"]
["c52670.graph_c0","--","--","Biological Process: protein deubiquitination (GO:0016579);; Molecular Function: thiol-dependent ubiquitinyl hydrolase activity (GO:0036459);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","Protein of unknown function (DUF629)","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA12046 [Gossypium barbadense]"]
["c92606.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: transcription initiation from RNA polymerase II promoter (GO:0006367);; Biological Process: transcription elongation from RNA polymerase II promoter (GO:0006368);; Biological Process: macromolecular complex subunit organization (GO:0043933);; ","K03145|5.44957e-24|cre:CHLREDRAFT_138155|K03145 transcription elongation factor S-II | (RefSeq) hypothetical protein","[K]","Transcription ","Transcription factor S-II (TFIIS), central domain;; Transcription factor S-II (TFIIS);; MuDR family transposase","Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1","K","Transcription","predicted protein [Chlamydomonas reinhardtii] "]
["c51607.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: transport (GO:0006810);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Nuclear transport factor 2 (NTF2) domain","Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: nuclear transport factor 2-like [Gossypium raimondii] "]
["c48709.graph_c0","--","--","--","--","--","--","Retroviral aspartyl protease;; Aspartyl protease;; gag-polyprotein putative aspartyl protease","Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]"]
["c29151.graph_c0","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: response to stress (GO:0006950);; Molecular Function: lipid binding (GO:0008289);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","--","--","S","Function unknown","hypothetical protein CRG98_030051 [Punica granatum]"]
["c7668.graph_c1","[T]","Signal transduction mechanisms ","Molecular Function: calcium ion binding (GO:0005509);; ","K13448|1.34246e-25|gra:105801710|K13448 calcium-binding protein CML | (RefSeq) probable calcium-binding protein CML27","[T]","Signal transduction mechanisms ","EF hand;; EF-hand domain pair;; EF-hand domain;; EF hand;; EF-hand domain pair","Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 PE=1 SV=1","DTZ","--","PREDICTED: probable calcium-binding protein CML27 [Gossypium raimondii] "]
["c52981.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","PAP2 superfamily","Probable lipid phosphate phosphatase beta OS=Arabidopsis thaliana OX=3702 GN=LPPB PE=2 SV=1","--","--","probable lipid phosphate phosphatase beta [Durio zibethinus] "]
["c39831.graph_c0","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1","K","Transcription","transcription factor bHLH93-like [Durio zibethinus]"]
["c43118.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: calcium-dependent phospholipid binding (GO:0005544);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Annexin","Annexin D4 OS=Arabidopsis thaliana OX=3702 GN=ANN4 PE=1 SV=1","S","Function unknown","PREDICTED: annexin D4-like [Gossypium arboreum]"]
["c16418.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105772988 [Gossypium raimondii] "]
["c36539.graph_c0","--","--","Biological Process: transport (GO:0006810);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Cellular Component: membrane (GO:0016020);; Biological Process: regulation of biological quality (GO:0065008);; ","K13947|4.0119e-66|tcc:TCM_018366|K13947 auxin efflux carrier family | (RefSeq) Auxin efflux carrier family protein","--","--","Membrane transport protein;; Membrane transport protein","Auxin efflux carrier component 8 OS=Arabidopsis thaliana OX=3702 GN=PIN8 PE=2 SV=1","S","Function unknown","PREDICTED: auxin efflux carrier component 8 [Theobroma cacao] "]
["c49099.graph_c2","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108467232 isoform X1 [Gossypium arboreum] "]
["c23043.graph_c0","[DPM]","Cell cycle control, cell division, chromosome partitioning ;; Inorganic ion transport and metabolism ;; Cell wall/membrane/envelope biogenesis ","Molecular Function: copper ion binding (GO:0005507);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: lignin catabolic process (GO:0046274);; Cellular Component: apoplast (GO:0048046);; Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05909|6.10938e-55|tcc:TCM_042605|K05909 laccase [EC:1.10.3.2] | (RefSeq) Laccase/Diphenol oxidase family protein","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase","Laccase-4 OS=Arabidopsis thaliana OX=3702 GN=IRX12 PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","laccase-22-like isoform X2 [Durio zibethinus]"]
["c93897.graph_c0","--","--","--","--","--","--","--","--","--","--","GTP-binding protein lepa [Coccomyxa subellipsoidea C-169] "]
["c54998.graph_c0","--","--","--","--","--","--","AT hook motif","--","--","--","--"]
["c93150.graph_c0","--","--","Cellular Component: ESCRT III complex (GO:0000815);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (GO:0043328);; Biological Process: intralumenal vesicle formation (GO:0070676);; Biological Process: cellular response to anoxia (GO:0071454);; ","--","--","--","--","--","U","Intracellular trafficking, secretion, and vesicular transport","vacuolar-sorting protein SNF7 [Kwoniella heveanensis BCC8398] "]
["c50484.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","K07018|7.84474e-40|gra:105769246|K07018 uncharacterized protein | (RefSeq) hypothetical protein","--","--","--","--","--","--","hypothetical protein CCACVL1_06094 [Corchorus capsularis]"]
["c30428.graph_c1","--","--","--","K02219|9.50549e-11|mus:103982756|K02219 cyclin-dependent kinase regulatory subunit CKS1 | (RefSeq) cyclin-dependent kinases regulatory subunit 1-like","[D]","Cell cycle control, cell division, chromosome partitioning ","--","Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein TanjilG_03207 [Lupinus angustifolius]"]
["c40073.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107937747 [Gossypium hirsutum]"]
["c54866.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF640)","--","S","Function unknown","PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Gossypium arboreum] "]
["c1325.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cytosol (GO:0005829);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: rhythmic process (GO:0048511);; Biological Process: defense response to fungus (GO:0050832);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|3.16453e-42|aly:ARALYDRAFT_345443|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 21","--","--","Peroxidase","Peroxidase 21 OS=Arabidopsis thaliana OX=3702 GN=PER21 PE=1 SV=1","G","Carbohydrate transport and metabolism","putative peroxidase ATP2a [Arabidopsis thaliana]"]
["c49092.graph_c1","[P]","Inorganic ion transport and metabolism ","Molecular Function: solute:proton antiporter activity (GO:0015299);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","[P]","Inorganic ion transport and metabolism ","Sodium/hydrogen exchanger family","Cation/H(+) antiporter 20 OS=Arabidopsis thaliana OX=3702 GN=CHX20 PE=2 SV=1","P","Inorganic ion transport and metabolism","cation/H(+) antiporter 20-like [Durio zibethinus]"]
["c19597.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[G]","Carbohydrate transport and metabolism ","Protein of unknown function, DUF604;; Fringe-like;; Protein of unknown function, DUF604","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107932917 [Gossypium hirsutum]"]
["c47813.graph_c0","--","--","--","--","--","--","Plant protein of unknown function (DUF641)","Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=GIL1 PE=2 SV=1","S","Function unknown","protein GRAVITROPIC IN THE LIGHT 1-like [Durio zibethinus]"]
["c47864.graph_c1","--","--","--","--","--","--","Protein of unknown function (DUF4005);; IQ calmodulin-binding motif","Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana OX=3702 GN=IQD31 PE=1 SV=1","S","Function unknown","PREDICTED: protein IQ-DOMAIN 31-like isoform X1 [Gossypium hirsutum] "]
["c18205.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107887439 [Gossypium hirsutum] "]
["c43914.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","PMR5 N terminal Domain;; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p;; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p","Protein trichome birefringence-like 3 OS=Arabidopsis thaliana OX=3702 GN=TBL3 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA02099 [Gossypium barbadense]"]
["c48997.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: copper ion binding (GO:0005507);; Biological Process: sulfur compound metabolic process (GO:0006790);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: stromule (GO:0010319);; Molecular Function: sulfite reductase activity (GO:0016002);; Cellular Component: membrane (GO:0016020);; Molecular Function: heme binding (GO:0020037);; Cellular Component: apoplast (GO:0048046);; Molecular Function: sulfite reductase (ferredoxin) activity (GO:0050311);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00392|0|tcc:TCM_040722|K00392 sulfite reductase (ferredoxin) [EC:1.8.7.1] | (RefSeq) Ferredoxin:sulfite reductase isoform 2","[P]","Inorganic ion transport and metabolism ","Nitrite and sulphite reductase 4Fe-4S domain;; Nitrite/Sulfite reductase ferredoxin-like half domain","Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum OX=4097 GN=SIR1 PE=1 SV=1","C","Energy production and conversion","PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Theobroma cacao] "]
["c43948.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: MAP kinase activity (GO:0004707);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: intracellular (GO:0005622);; Biological Process: lateral root formation (GO:0010311);; ","K14512|6.87993e-97|tcc:TCM_019832|K14512 mitogen-activated protein kinase 6 [EC:2.7.11.24] | (RefSeq) Mitogen-activated protein kinase 6","[T]","Signal transduction mechanisms ","Protein kinase domain","Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum OX=4097 GN=NTF6 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein B456_009G103800 [Gossypium raimondii]"]
["c52646.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: cold acclimation (GO:0009631);; Biological Process: response to abscisic acid (GO:0009737);; ","--","--","--","Dehydrin","Late embryogenesis abundant protein OS=Raphanus sativus OX=3726 PE=2 SV=1","S","Function unknown","PREDICTED: late embryogenesis abundant protein-like [Gossypium hirsutum]"]
["c29279.graph_c1","--","--","Molecular Function: G-protein coupled receptor activity (GO:0004930);; Molecular Function: GTPase activator activity (GO:0005096);; Cellular Component: nucleus (GO:0005634);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: G-protein coupled receptor signaling pathway (GO:0007186);; Biological Process: response to water deprivation (GO:0009414);; Biological Process: response to abscisic acid (GO:0009737);; Biological Process: response to glucose (GO:0009749);; Cellular Component: endosome membrane (GO:0010008);; Biological Process: sugar mediated signaling pathway (GO:0010182);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: regulation of cell proliferation (GO:0042127);; Biological Process: positive regulation of GTPase activity (GO:0043547);; ","--","--","--","Regulator of G protein signaling domain","Regulator of G-protein signaling 1 OS=Arabidopsis thaliana OX=3702 GN=RGS1 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein B456_008G162700 [Gossypium raimondii]"]
["c72747.graph_c0","--","--","Molecular Function: protein binding (GO:0005515);; Biological Process: actin filament organization (GO:0007015);; Biological Process: cellular component assembly (GO:0022607);; Cellular Component: cytoplasmic part (GO:0044444);; Biological Process: biological regulation (GO:0065007);; Cellular Component: cell periphery (GO:0071944);; ","K05759|6.93413e-19|mis:MICPUN_79195|K05759 profilin | (RefSeq) PRO1; profilin","[Z]","Cytoskeleton ","Profilin","Profilin OS=Ananas comosus OX=4615 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Putative Profilin [Rhizopus microsporus]"]
["c30427.graph_c1","[V]","Defense mechanisms ","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: integral component of membrane (GO:0016021);; ","K03327|6.92988e-124|gra:105766084|K03327 multidrug resistance protein, MATE family | (RefSeq) MATE efflux family protein 5","[R]","General function prediction only ","MatE","Protein DETOXIFICATION 14 OS=Arabidopsis thaliana OX=3702 GN=DTX14 PE=1 SV=1","V","Defense mechanisms","MATE efflux family protein 9 [Gossypium arboreum]"]
["c46104.graph_c0","[HT]","Coenzyme transport and metabolism ;; Signal transduction mechanisms ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K08869|0|gra:105790209|K08869 aarF domain-containing kinase | (RefSeq) probable serine/threonine-protein kinase abkC","[R]","General function prediction only ","ABC1 family","Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABC1K7 PE=1 SV=1","S","Function unknown","PREDICTED: probable serine/threonine-protein kinase abkC [Gossypium hirsutum]"]
["c48614.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Biological Process: sucrose metabolic process (GO:0005985);; Molecular Function: sucrose synthase activity (GO:0016157);; ","K00695|0|gra:105791444|K00695 sucrose synthase [EC:2.4.1.13] | (RefSeq) SusA1; sucrose synthase 2","[M]","Cell wall/membrane/envelope biogenesis ","Sucrose synthase;; Glycosyl transferases group 1","Sucrose synthase 2 OS=Pisum sativum OX=3888 GN=SUS2 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","sucrose synthase SusA1 [Gossypium mustelinum]"]
["c31014.graph_c0","[C]","Energy production and conversion ","Molecular Function: aldehyde dehydrogenase (NAD) activity (GO:0004029);; Biological Process: metabolic process (GO:0008152);; ","K00128|0|bna:106436226|K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | (RefSeq) aldehyde dehydrogenase family 2 member B7, mitochondrial","[C]","Energy production and conversion ","Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH2B7 PE=1 SV=2","C","Energy production and conversion","aldehyde dehydrogenase, mitochondrial precursor [Phytophthora infestans T30-4] "]
["c45571.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; Ankyrin repeats (3 copies);; Ankyrin repeats (many copies);; Ankyrin repeat;; Ankyrin repeats (many copies);; Ankyrin repeat;; Protein tyrosine kinase;; Protein kinase domain","Integrin-linked protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=ILK1 PE=1 SV=1","T","Signal transduction mechanisms","putative serine/threonine-protein kinase [Gossypium arboreum]"]
["c14360.graph_c0","--","--","Biological Process: cytoplasmic translation (GO:0002181);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02905|3.37512e-18|vcn:VOLCADRAFT_85396|K02905 large subunit ribosomal protein L29e | (RefSeq) rpl29; component of cytosolic 80S ribosome and 60S large subunit","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L29e protein family","60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","unknown [Lotus japonicus]"]
["c44721.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At3g53170 [Gossypium raimondii] "]
["c43358.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: indoleacetic acid conjugate metabolic process (GO:0033473);; Biological Process: shoot system development (GO:0048367);; Molecular Function: methyl indole-3-acetate esterase activity (GO:0080030);; ","--","--","--","--","Methylesterase 17 OS=Arabidopsis thaliana OX=3702 GN=MES17 PE=1 SV=1","S","Function unknown","PREDICTED: methylesterase 17-like [Gossypium arboreum]"]
["c33280.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105769933 [Gossypium raimondii] "]
["c35900.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Domain of unknown function;; Ankyrin repeat;; Ankyrin repeats (many copies);; Subtilase family","Ankyrin repeat-containing protein BDA1 OS=Arabidopsis thaliana OX=3702 GN=BAD1 PE=1 SV=1","S","Function unknown","hypothetical protein B456_003G178500, partial [Gossypium raimondii]"]
["c26921.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrial matrix (GO:0005759);; Biological Process: leucine catabolic process (GO:0006552);; Molecular Function: isovaleryl-CoA dehydrogenase activity (GO:0008470);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00253|1.94949e-143|tcc:TCM_041072|K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4] | (RefSeq) Isovaleryl-CoA-dehydrogenase isoform 1","[EI]","--","Acyl-CoA dehydrogenase, C-terminal domain;; Acyl-CoA dehydrogenase, C-terminal domain","Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=IVD PE=1 SV=2","I","Lipid transport and metabolism","Isovaleryl-CoA dehydrogenase-2C mitochondrial -like protein [Gossypium arboreum]"]
["c22987.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627);; Biological Process: oxidation-reduction process (GO:0055114);; ","K12345|1.28109e-71|tcc:TCM_006768|K12345 3-oxo-5-alpha-steroid 4-dehydrogenase 3 [EC:1.3.1.22 1.3.1.94] | (RefSeq) 3-oxo-5-alpha-steroid 4-dehydrogenase family protein","[I]","Lipid transport and metabolism ","3-oxo-5-alpha-steroid 4-dehydrogenase","Polyprenol reductase 1 OS=Arabidopsis thaliana OX=3702 GN=PPRD1 PE=1 SV=1","S","Function unknown","polyprenol reductase 2-like [Durio zibethinus]"]
["c43120.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K14500|6.3236e-144|tcc:TCM_005349|K14500 BR-signaling kinase [EC:2.7.11.1] | (RefSeq) BR-signaling kinase 3","--","--","Protein tyrosine kinase;; Protein kinase domain","Serine/threonine-protein kinase BSK3 OS=Arabidopsis thaliana OX=3702 GN=BSK3 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein COLO4_12696 [Corchorus olitorius]"]
["c54662.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","--","--","PREDICTED: uncharacterized protein LOC109218177 [Nicotiana attenuata]"]
["c78067.graph_c0","--","--","--","--","--","--","Collagen triple helix repeat (20 copies)","--","--","--","--"]
["c23858.graph_c0","--","--","--","K09422|7.0141e-58|gra:105789221|K09422 myb proto-oncogene protein, plant | (RefSeq) protein ODORANT1-like","[K]","Transcription ","--","Protein ODORANT1 OS=Petunia hybrida OX=4102 GN=ODO1 PE=2 SV=1","K","Transcription","PREDICTED: protein ODORANT1-like [Gossypium raimondii] "]
["c40841.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA replication (GO:0006260);; ","K10738|0|gra:105762728|K10738 DNA helicase MCM9 [EC:3.6.4.12] | (RefSeq) probable DNA helicase MCM9","[L]","Replication, recombination and repair ","MCM OB domain;; MCM2/3/5 family;; AAA domain (dynein-related subfamily);; Magnesium chelatase, subunit ChlI;; MCM2/3/5 family","Probable DNA helicase MCM9 OS=Arabidopsis thaliana OX=3702 GN=MCM9 PE=3 SV=1","L","Replication, recombination and repair","PREDICTED: probable DNA helicase MCM9 [Gossypium arboreum]"]
["c23668.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: triose-phosphate isomerase activity (GO:0004807);; Cellular Component: cytosol (GO:0005829);; Biological Process: gluconeogenesis (GO:0006094);; Biological Process: glycolytic process (GO:0006096);; Biological Process: pentose-phosphate shunt (GO:0006098);; Biological Process: glycerol catabolic process (GO:0019563);; Biological Process: glyceraldehyde-3-phosphate biosynthetic process (GO:0046166);; ","K01803|2.63698e-145|fve:101311222|K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] | (RefSeq) triosephosphate isomerase, cytosolic","[G]","Carbohydrate transport and metabolism ","Triosephosphate isomerase","Triosephosphate isomerase, cytosolic OS=Petunia hybrida OX=4102 GN=TPIP1 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: triosephosphate isomerase, cytosolic [Fragaria vesca subsp. vesca]"]
["c30699.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD24101 [Gossypium barbadense]"]
["c75708.graph_c0","--","--","Molecular Function: taxadien-5-alpha-ol O-acetyltransferase activity (GO:0050638);; ","K15400|2.3112e-51|gra:105771736|K15400 omega-hydroxypalmitate O-feruloyl transferase [EC:2.3.1.188] | (RefSeq) omega-hydroxypalmitate O-feruloyl transferase","--","--","Transferase family","(Z)-3-hexen-1-ol acetyltransferase OS=Arabidopsis thaliana OX=3702 GN=CHAT PE=1 SV=1","S","Function unknown","PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Gossypium raimondii] "]
["c49307.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","--","K12852|0|tcc:TCM_041395|K12852 116 kDa U5 small nuclear ribonucleoprotein component | (RefSeq) Ribosomal protein S5/Elongation factor G/III/V family protein","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor Tu GTP binding domain;; 116 kDa U5 small nuclear ribonucleoprotein component N-terminus;; Elongation factor G C-terminus;; Elongation factor G, domain IV;; Elongation factor Tu domain 2","110 kDa U5 small nuclear ribonucleoprotein component CLO OS=Arabidopsis thaliana OX=3702 GN=CLO PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Gossypium hirsutum]"]
["c17619.graph_c0","--","--","Biological Process: single-organism process (GO:0044699);; ","--","--","--","TCP family transcription factor","Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TCP15-like [Gossypium raimondii] "]
["c26753.graph_c0","--","--","Cellular Component: cell (GO:0005623);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: isomerase activity (GO:0016853);; Biological Process: cell redox homeostasis (GO:0045454);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica OX=39947 GN=PDIL5-4 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein M569_11301, partial [Genlisea aurea]"]
["c48966.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Mitochondrial 28S ribosomal protein S27;; Sensor_kinase_SpoOB-type, alpha-helical domain;; Occlusion-derived virus envelope protein E25","Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic [Gossypium raimondii] "]
["c72516.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD00550 [Gossypium barbadense]"]
["c47341.graph_c1","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","CS domain;; Shikimate kinase","Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SKL2 PE=2 SV=2","S","Function unknown","PREDICTED: probable inactive shikimate kinase like 2, chloroplastic [Gossypium arboreum] "]
["c20499.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein Csa_2G077550 [Cucumis sativus]"]
["c15799.graph_c0","--","--","Biological Process: response to auxin (GO:0009733);; ","K14488|2.37485e-23|tcc:TCM_006743|K14488 SAUR family protein | (RefSeq) SAUR-like auxin-responsive protein family","--","--","Auxin responsive protein","Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-responsive protein SAUR21-like [Theobroma cacao]"]
["c33725.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC105638542 [Jatropha curcas]"]
["c48203.graph_c1","[K]","Transcription ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Cellular Component: membrane (GO:0016020);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","Leucine rich repeat;; Protein kinase domain;; Protein tyrosine kinase;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine rich repeat N-terminal domain;; Leucine Rich Repeat","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1","S","Function unknown","PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium hirsutum]"]
["c18590.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase","Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana OX=3702 GN=RFK1 PE=2 SV=3","T","Signal transduction mechanisms","uncharacterized protein LOC111274223, partial [Durio zibethinus]"]
["c50470.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: ATP biosynthetic process (GO:0006754);; Molecular Function: hydrogen-exporting ATPase activity, phosphorylative mechanism (GO:0008553);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","K01535|4.67151e-50|nnu:104603205|K01535 H+-transporting ATPase [EC:3.6.3.6] | (RefSeq) plasma membrane ATPase 4","[P]","Inorganic ion transport and metabolism ","--","Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia OX=4092 GN=PMA4 PE=2 SV=1","P","Inorganic ion transport and metabolism","Plasma membrane ATPase 4 [Glycine soja]"]
["c45732.graph_c0","--","--","--","K14506|5.92486e-158|tcc:TCM_005190|K14506 jasmonic acid-amino synthetase | (RefSeq) Indole-3-acetic acid-amido synthetase GH3.5 isoform 2","--","--","GH3 auxin-responsive promoter;; GH3 auxin-responsive promoter","Jasmonic acid-amido synthetase JAR1 OS=Oryza sativa subsp. japonica OX=39947 GN=GH3.5 PE=2 SV=1","S","Function unknown","Indole-3-acetic acid-amido synthetase GH3.5 isoform 2 [Theobroma cacao]"]
["c8339.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana OX=3702 GN=EFR PE=1 SV=1","S","Function unknown","PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR isoform X2 [Gossypium raimondii]"]
["c34294.graph_c1","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: recognition of pollen (GO:0048544);; ","--","--","--","D-mannose binding lectin;; S-locus glycoprotein domain;; PAN-like domain;; Protein tyrosine kinase;; Protein kinase domain","G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana OX=3702 GN=B120 PE=2 SV=1","T","Signal transduction mechanisms","G-type lectin S-receptor-like serine/threonine-protein kinase B120 [Durio zibethinus]"]
["c30235.graph_c0","--","--","Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: RNA biosynthetic process (GO:0032774);; ","--","--","--","--","--","--","--","dna-directed rna polymerase subunit b&apos; [Gossypium arboreum]"]
["c62529.graph_c0","--","--","Molecular Function: nucleotidyltransferase activity (GO:0016779);; ","K03514|3.74407e-11|tcc:TCM_031492|K03514 non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] | (RefSeq) Nucleotidyltransferase family protein isoform 1","[L]","Replication, recombination and repair ","--","--","L","Replication, recombination and repair","hypothetical protein GOBAR_AA16196 [Gossypium barbadense]"]
["c50969.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|9.97126e-136|gra:105769509|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 46","--","--","Peroxidase","Peroxidase 18 OS=Arabidopsis thaliana OX=3702 GN=PER18 PE=3 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: peroxidase 46 [Gossypium raimondii] "]
["c73672.graph_c0","--","--","Biological Process: pollen development (GO:0009555);; Biological Process: single-organism cellular process (GO:0044763);; ","--","--","--","--","LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1","S","Function unknown","PREDICTED: LOB domain-containing protein 27-like [Gossypium hirsutum] "]
["c89231.graph_c0","--","--","--","K03848|4.13454e-10|tcc:TCM_019464|K03848 alpha-1,3-glucosyltransferase [EC:2.4.1.267] | (RefSeq) ALG6, ALG8 glycosyltransferase family","--","--","--","--","--","--","PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [Theobroma cacao] "]
["c34197.graph_c1","--","--","Molecular Function: ion channel activity (GO:0005216);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ion transmembrane transport (GO:0034220);; ","K05391|1.22049e-147|gra:105795979|K05391 cyclic nucleotide gated channel, other eukaryote | (RefSeq) cyclic nucleotide-gated ion channel 1-like","[PT]","--","Ion transport protein","Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana OX=3702 GN=CNGC13 PE=3 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: cyclic nucleotide-gated ion channel 1-like [Gossypium raimondii] "]
["c45911.graph_c2","--","--","--","--","--","--","Aluminium induced protein","Stem-specific protein TSJT1 OS=Nicotiana tabacum OX=4097 GN=TSJT1 PE=2 SV=1","S","Function unknown","PREDICTED: stem-specific protein TSJT1-like [Gossypium hirsutum]"]
["c45712.graph_c0","--","--","--","K05857|0|gra:105771549|K05857 phosphatidylinositol phospholipase C, delta [EC:3.1.4.11] | (RefSeq) phosphoinositide phospholipase C 6","[T]","Signal transduction mechanisms ","Phosphatidylinositol-specific phospholipase C, X domain;; Phosphatidylinositol-specific phospholipase C, Y domain;; C2 domain;; Phosphoinositide-specific phospholipase C, efhand-like","Phosphoinositide phospholipase C 6 OS=Arabidopsis thaliana OX=3702 GN=PLC6 PE=2 SV=2","S","Function unknown","Phosphoinositide phospholipase C 6 -like protein [Gossypium arboreum]"]
["c67058.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c43133.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","C1 domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105795608 [Gossypium raimondii] "]
["c62889.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_012G101700 [Gossypium raimondii]"]
["c26493.graph_c3","[K]","Transcription ","Molecular Function: ATP binding (GO:0005524);; Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; ","--","--","--","Leucine Rich repeats (2 copies);; Leucine rich repeat","Disease resistance protein RPS2 OS=Arabidopsis thaliana OX=3702 GN=RPS2 PE=1 SV=1","S","Function unknown","hypothetical protein B456_007G3561001, partial [Gossypium raimondii]"]
["c46231.graph_c0","[R]","General function prediction only ","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","von Willebrand factor type A domain;; von Willebrand factor type A domain;; von Willebrand factor type A domain;; Organic solute transporter Ostalpha;; Organic solute transporter Ostalpha;; Organic solute transporter Ostalpha","Protein LAZ1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g23070 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107901050 isoform X1 [Gossypium hirsutum]"]
["c44531.graph_c0","[T]","Signal transduction mechanisms ","--","K14803|7.6839e-104|gra:105770043|K14803 protein phosphatase PTC2/3 [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 27","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0179700 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA27733 [Gossypium barbadense]"]
["c47448.graph_c1","--","--","Biological Process: microtubule-based process (GO:0007017);; Cellular Component: dynein complex (GO:0030286);; ","K10418|1.23558e-63|gra:105785659|K10418 dynein light chain LC8-type | (RefSeq) dynein light chain LC6, flagellar outer arm","[Z]","Cytoskeleton ","Dynein light chain type 1","Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1","S","Function unknown","PREDICTED: dynein light chain LC6, flagellar outer arm-like [Gossypium hirsutum] "]
["c28741.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: catalytic activity (GO:0003824);; ","K00604|7.3119e-10|cvr:CHLNCDRAFT_48904|K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] | (RefSeq) hypothetical protein","[F]","Nucleotide transport and metabolism ","Formyl transferase","--","J","Translation, ribosomal structure and biogenesis","aldehyde dehydrogenase [Klebsormidium nitens]"]
["c26246.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","F-box/kelch-repeat protein At1g57790-like [Durio zibethinus]"]
["c46165.graph_c0","--","--","--","--","--","--","IQ calmodulin-binding motif","Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana OX=3702 GN=IQD1 PE=1 SV=1","Z","Cytoskeleton","protein IQ-DOMAIN 1 [Herrania umbratica] "]
["c53297.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751);; Biological Process: pentose-phosphate shunt, non-oxidative branch (GO:0009052);; ","K01807|2.94344e-53|gra:105794451|K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6] | (RefSeq) probable ribose-5-phosphate isomerase 2","[G]","Carbohydrate transport and metabolism ","Ribose 5-phosphate isomerase A (phosphoriboisomerase A)","Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=RPI2 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: probable ribose-5-phosphate isomerase 2 [Gossypium raimondii] "]
["c41340.graph_c0","--","--","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: cuticle hydrocarbon biosynthetic process (GO:0006723);; Biological Process: wax biosynthetic process (GO:0010025);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: alkane biosynthetic process (GO:0043447);; Biological Process: pollen sperm cell differentiation (GO:0048235);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","WAX2 C-terminal domain","Protein ECERIFERUM 3 OS=Arabidopsis thaliana OX=3702 GN=CER3 PE=1 SV=1","S","Function unknown","hypothetical protein B456_013G242200 [Gossypium raimondii]"]
["c51720.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K15718|1.64637e-90|gra:105800512|K15718 linoleate 9S-lipoxygenase [EC:1.13.11.58] | (RefSeq) probable linoleate 9S-lipoxygenase 5","--","--","PLAT/LH2 domain","Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum OX=4113 GN=LOX1.5 PE=2 SV=1","S","Function unknown","probable linoleate 9S-lipoxygenase 5 [Durio zibethinus]"]
["c46197.graph_c0","--","--","Cellular Component: vacuole (GO:0005773);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Vacuolar protein sorting 55","Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Theobroma cacao] "]
["c83203.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: hydrolase activity, acting on glycosyl bonds (GO:0016798);; ","K01179|2.45035e-19|cre:CHLREDRAFT_194523|K01179 endoglucanase [EC:3.2.1.4] | (RefSeq) hypothetical protein","--","--","Glycosyl hydrolase family 9","Endoglucanase 14 OS=Arabidopsis thaliana OX=3702 GN=At2g44560 PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein GPECTOR_12g429 [Gonium pectorale]"]
["c83516.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c41725.graph_c0","--","--","--","--","--","--","--","Uncharacterized protein At5g01610 OS=Arabidopsis thaliana OX=3702 GN=At5g01610 PE=1 SV=1","S","Function unknown","uncharacterized protein At5g01610-like [Durio zibethinus]"]
["c63112.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|1.95948e-51|adu:107480146|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription repressor MYB6-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Myb-related protein 308 OS=Antirrhinum majus OX=4151 GN=MYB308 PE=2 SV=1","K","Transcription","myb-related protein 308-like [Durio zibethinus]"]
["c40357.graph_c0","--","--","--","--","--","--","KIP1-like protein","Protein NETWORKED 2D OS=Arabidopsis thaliana OX=3702 GN=NET2D PE=3 SV=1","S","Function unknown","protein NETWORKED 2D-like [Durio zibethinus]"]
["c35460.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter","Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia OX=4092 GN=PDR2 PE=2 SV=1","V","Defense mechanisms","hypothetical protein GOBAR_DD04111 [Gossypium barbadense]"]
["c80862.graph_c0","[G]","Carbohydrate transport and metabolism ","--","--","--","--","Glycoside hydrolase 97","--","--","--","conserved hypothetical protein, partial [Ricinus communis]"]
["c42204.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[R]","General function prediction only ","Zn-finger in Ran binding protein and others","--","S","Function unknown","PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Gossypium raimondii] "]
["c30148.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[E]","Amino acid transport and metabolism ","Trypsin","--","O","Posttranslational modification, protein turnover, chaperones","trypsin [Stemphylium lycopersici]"]
["c92424.graph_c0","[P]","Inorganic ion transport and metabolism ","--","--","--","--","Sodium/hydrogen exchanger family","--","--","--","--"]
["c25337.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; DYW family of nucleic acid deaminases;; PPR repeat;; Pentatricopeptide repeat domain;; Vacuolar sorting protein 39 domain 1;; PPR repeat;; PPR repeat family;; PPR repeat","Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2","S","Function unknown","hypothetical protein GOBAR_DD19527 [Gossypium barbadense]"]
["c50654.graph_c0","--","--","Biological Process: response to auxin (GO:0009733);; ","K14488|2.30712e-76|tcc:TCM_037470|K14488 SAUR family protein | (RefSeq) SAUR-like auxin-responsive protein family","--","--","Auxin responsive protein","Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1","S","Function unknown","auxin-responsive protein SAUR36-like [Durio zibethinus]"]
["c48435.graph_c0","--","--","Biological Process: gene silencing by RNA (GO:0031047);; ","--","--","--","XS domain;; XS zinc finger domain;; XH domain;; XH domain","Protein INVOLVED IN DE NOVO 2 OS=Arabidopsis thaliana OX=3702 GN=IDN2 PE=1 SV=1","S","Function unknown","protein INVOLVED IN DE NOVO 2 isoform X3 [Durio zibethinus]"]
["c19359.graph_c1","--","--","--","K12819|8.27793e-22|mdm:103426058|K12819 pre-mRNA-processing factor SLU7 | (RefSeq) pre-mRNA-splicing factor SLU7-like","[A]","RNA processing and modification ","Pre-mRNA splicing Prp18-interacting factor","Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0127700 PE=2 SV=1","A","RNA processing and modification","hypothetical protein CISIN_1g0406251mg, partial [Citrus sinensis]"]
["c63899.graph_c0","--","--","--","--","[G]","Carbohydrate transport and metabolism ","--","--","GM","--","hypothetical protein GOBAR_AA33707 [Gossypium barbadense]"]
["c58788.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111279461 [Durio zibethinus]"]
["c14893.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; Biological Process: trehalose biosynthetic process (GO:0005992);; ","K16055|3.58651e-55|gra:105768429|K16055 trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] | (RefSeq) probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7","[G]","Carbohydrate transport and metabolism ","Glycosyltransferase family 20","Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana OX=3702 GN=TPS7 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD32835 [Gossypium barbadense]"]
["c35302.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA integration (GO:0015074);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","hypothetical protein VITISV_002033 [Vitis vinifera]"]
["c9238.graph_c0","--","--","Biological Process: response to water deprivation (GO:0009414);; Biological Process: stomatal complex patterning (GO:0010375);; Biological Process: plasmodesmata-mediated intercellular transport (GO:0010497);; Cellular Component: microtubule cytoskeleton (GO:0015630);; Biological Process: cortical microtubule organization (GO:0043622);; Biological Process: defense response to virus (GO:0051607);; ","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108455862 isoform X1 [Gossypium arboreum]"]
["c44966.graph_c2","--","--","--","K09422|1.28771e-36|tcc:TCM_020889|K09422 myb proto-oncogene protein, plant | (RefSeq) Myb domain protein 13, putative","[K]","Transcription ","--","Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1","K","Transcription","transcription factor MYB15-like [Durio zibethinus]"]
["c61221.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02973|1.08018e-18|cam:101513773|K02973 small subunit ribosomal protein S23e | (RefSeq) 40S ribosomal protein S23-2-like","[J]","Translation, ribosomal structure and biogenesis ","--","40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1","S","Function unknown","putative 40S ribosomal protein [Zea mays]"]
["c44505.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF1664)","--","S","Function unknown","uncharacterized protein LOC110416180 [Herrania umbratica] "]
["c43807.graph_c2","--","--","--","--","--","--","--","Uncharacterized protein At4g15545 OS=Arabidopsis thaliana OX=3702 GN=At4g15545 PE=1 SV=1","--","--","uncharacterized protein At4g15545 [Morus notabilis] "]
["c38015.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105783285 [Gossypium raimondii] "]
["c2048.graph_c0","--","--","--","--","[C]","Energy production and conversion ","--","--","S","Function unknown","--"]
["c87484.graph_c0","--","--","--","--","--","--","Cytochrome P450","--","--","--","--"]
["c92177.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: glycogen catabolic process (GO:0005980);; Molecular Function: glycogen phosphorylase activity (GO:0008184);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","K00688|4.245e-07|cme:CYME_CMD184C|K00688 glycogen phosphorylase [EC:2.4.1.1] | (RefSeq) glycogen phosphorylase","[G]","Carbohydrate transport and metabolism ","--","--","G","Carbohydrate transport and metabolism","hypothetical protein PV09_00814 [Verruconis gallopava] "]
["c33402.graph_c0","--","--","Cellular Component: mitochondrial outer membrane translocase complex (GO:0005742);; Molecular Function: protein channel activity (GO:0015266);; Molecular Function: transferase activity (GO:0016740);; Biological Process: protein import into mitochondrial matrix (GO:0030150);; Cellular Component: integral component of mitochondrial outer membrane (GO:0031307);; Biological Process: protein import into mitochondrial outer membrane (GO:0045040);; ","K17769|9.38594e-29|gra:105777912|K17769 mitochondrial import receptor subunit TOM22 | (RefSeq) mitochondrial import receptor subunit TOM9-2-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=TOM9-2 PE=1 SV=3","U","Intracellular trafficking, secretion, and vesicular transport","mitochondrial import receptor subunit TOM9-2-like [Durio zibethinus]"]
["c72147.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Cellular Component: nucleus (GO:0005634);; Molecular Function: transferase activity (GO:0016740);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","L","Replication, recombination and repair","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Apostasia shenzhenica]"]
["c32478.graph_c0","--","--","--","--","--","--","Insect cuticle protein","--","--","--","--"]
["c46288.graph_c0","--","--","--","--","[S]","Function unknown ","mRNA biogenesis factor","--","S","Function unknown","WW domain-binding protein 11-like [Durio zibethinus]"]
["c49302.graph_c0","--","--","--","K03028|0|gra:105774169|K03028 26S proteasome regulatory subunit N1 | (RefSeq) 26S proteasome non-ATPase regulatory subunit 2 homolog A","[O]","Posttranslational modification, protein turnover, chaperones ","Proteasome/cyclosome repeat","26S proteasome non-ATPase regulatory subunit 2 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPN1A PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Gossypium arboreum]"]
["c38430.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; Pentatricopeptide repeat domain;; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g20710 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Gossypium hirsutum]"]
["c40884.graph_c0","[GI]","Carbohydrate transport and metabolism ;; Lipid transport and metabolism ","Cellular Component: cell wall (GO:0005618);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin catabolic process (GO:0045490);; ","--","--","--","Pectinesterase;; Pectinesterase;; Reverse transcriptase-like","Probable pectinesterase 8 OS=Arabidopsis thaliana OX=3702 GN=PME8 PE=2 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: probable pectinesterase 8 [Gossypium arboreum]"]
["c45622.graph_c0","[R]","General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108467674 [Gossypium arboreum]"]
["c76885.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107946296 [Gossypium hirsutum]"]
["c34063.graph_c1","--","--","--","--","--","--","--","BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana OX=3702 GN=At3g22104 PE=2 SV=1","S","Function unknown","PREDICTED: BTB/POZ domain-containing protein At3g22104-like isoform X1 [Gossypium hirsutum]"]
["c28747.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; Pentatricopeptide repeat domain","Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana OX=3702 GN=At2g17033 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Gossypium raimondii] "]
["c47083.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","Protein of unknown function (DUF632);; Protein of unknown function (DUF630)","Nitrate regulatory gene2 protein OS=Arabidopsis thaliana OX=3702 GN=NRG2 PE=1 SV=1","S","Function unknown","uncharacterized protein LOC110427380 [Herrania umbratica]"]
["c75588.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","EGF-like domain","--","S","Function unknown","--"]
["c42631.graph_c0","--","--","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: inositol catabolic process (GO:0019310);; Molecular Function: inositol oxygenase activity (GO:0050113);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00469|5.30733e-160|sind:105157705|K00469 inositol oxygenase [EC:1.13.99.1] | (RefSeq) inositol oxygenase 1-like","[R]","General function prediction only ","Myo-inositol oxygenase","Inositol oxygenase 1 OS=Arabidopsis thaliana OX=3702 GN=MIOX1 PE=2 SV=1","S","Function unknown","inositol oxygenase 1-like isoform X1 [Sesamum indicum]"]
["c82156.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c92980.graph_c0","--","--","--","K02981|1.31249e-08|ccp:CHC_T00001700001|K02981 small subunit ribosomal protein S2e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","--","40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","unnamed protein product [Chondrus crispus] "]
["c1173.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","--","WAT1-related protein At5g47470 OS=Arabidopsis thaliana OX=3702 GN=At5g47470 PE=3 SV=1","S","Function unknown","hypothetical protein GOBAR_DD02776 [Gossypium barbadense]"]
["c43068.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: xyloglucan metabolic process (GO:0010411);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: O-acetyltransferase activity (GO:0016413);; ","--","--","--","GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p;; PMR5 N terminal Domain","Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana OX=3702 GN=AXY4 PE=1 SV=1","S","Function unknown","PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Gossypium arboreum] "]
["c45943.graph_c0","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","K07195|0|gra:105773390|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70A1-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exo70 exocyst complex subunit","Exocyst complex component EXO70A1 OS=Arabidopsis thaliana OX=3702 GN=EXO70A1 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA36165 [Gossypium barbadense]"]
["c35369.graph_c1","--","--","Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; ","--","[K]","Transcription ","Myb/SANT-like DNA-binding domain","Trihelix transcription factor GTL2 OS=Arabidopsis thaliana OX=3702 GN=At5g28300 PE=2 SV=1","K","Transcription","PREDICTED: trihelix transcription factor GTL2 isoform X1 [Gossypium raimondii]"]
["c65261.graph_c0","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10398|1.34888e-18|tcc:TCM_041959|K10398 kinesin family member 11 | (RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1","[Z]","Cytoskeleton ","--","Kinesin-like protein KIN-5D OS=Arabidopsis thaliana OX=3702 GN=KIN5D PE=3 SV=1","Z","Cytoskeleton","hypothetical protein B456_009G103300 [Gossypium raimondii]"]
["c35969.graph_c0","--","--","--","--","--","--","--","--","--","--","NEP1-interacting protein-like 1 [Durio zibethinus]"]
["c18843.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; Biological Process: metal ion transport (GO:0030001);; Molecular Function: transition metal ion binding (GO:0046914);; Biological Process: cellular transition metal ion homeostasis (GO:0046916);; ","--","[P]","Inorganic ion transport and metabolism ","Heavy-metal-associated domain","Heavy metal-associated isoprenylated plant protein 23 OS=Arabidopsis thaliana OX=3702 GN=HIPP23 PE=1 SV=1","S","Function unknown","heavy metal-associated isoprenylated plant protein 23-like [Durio zibethinus]"]
["c41672.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105804361 [Gossypium raimondii] "]
["c90463.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","--","--","Putative S-adenosyl-L-methionine-dependent methyltransferase","Probable methyltransferase PMT16 OS=Arabidopsis thaliana OX=3702 GN=At2g45750 PE=3 SV=1","S","Function unknown","methyltransferase PMT16, putative [Medicago truncatula] "]
["c52998.graph_c0","--","--","Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: protein ubiquitination (GO:0016567);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC108475501 [Gossypium arboreum] "]
["c54755.graph_c0","--","--","--","--","[B]","Chromatin structure and dynamics ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18610365 [Theobroma cacao]"]
["c49010.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","Ty3/gypsy retrotransposon protein [Trifolium pratense]"]
["c21076.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: chloroplast (GO:0009507);; ","K11267|6.53725e-47|gra:105798919|K11267 sister chromatid cohesion protein PDS5 | (RefSeq) sister chromatid cohesion protein PDS5 homolog A-like","[D]","Cell cycle control, cell division, chromosome partitioning ","--","--","S","Function unknown","PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like isoform X2 [Gossypium raimondii]"]
["c49269.graph_c1","--","--","--","--","--","--","Alternative splicing regulator","Protein FLX-like 3 OS=Arabidopsis thaliana OX=3702 GN=FLXL3 PE=1 SV=1","S","Function unknown","PREDICTED: protein FLX-like 3 [Gossypium raimondii] "]
["c77138.graph_c0","[R]","General function prediction only ","--","--","[GQ]","--","Oxidoreductase family, NAD-binding Rossmann fold","--","S","Function unknown","Dimeric dihydrodiol dehydrogenase [Phytophthora palmivora var. palmivora]"]
["c35933.graph_c1","[GM]","Carbohydrate transport and metabolism ;; Cell wall/membrane/envelope biogenesis ","--","--","--","--","BNR repeat-like domain","--","G","Carbohydrate transport and metabolism","PREDICTED: uncharacterized protein LOC105781019 isoform X2 [Gossypium raimondii] "]
["c53351.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: RNA processing (GO:0006396);; ","--","[A]","RNA processing and modification ","--","--","S","Function unknown","PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Gossypium arboreum] "]
["c63803.graph_c0","--","--","--","--","--","--","--","Protein STRICTOSIDINE SYNTHASE-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=SSL11 PE=2 SV=2","--","--","Calcium-dependent phosphotriesterase superfamily protein, putative [Theobroma cacao]"]
["c56023.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","2OG-Fe(II) oxygenase superfamily","Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 OS=Arabidopsis thaliana OX=3702 GN=AOP1.2 PE=2 SV=1","S","Function unknown","Oxoglutarate/iron-dependent dioxygenase [Corchorus olitorius]"]
["c66914.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Molecular Function: ADP binding (GO:0043531);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD36679 [Gossypium barbadense]"]
["c50428.graph_c0","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; ","K11275|1.0309e-38|tcc:TCM_000233|K11275 histone H1/5 | (RefSeq) Histone H1-3","--","--","linker histone H1 and H5 family","Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1","S","Function unknown","histone H1-like [Durio zibethinus]"]
["c76601.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Cytochrome P450 71A3 (Fragment) OS=Solanum melongena OX=4111 GN=CYP71A3 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Cytochrome P450 [Corchorus olitorius]"]
["c45151.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein B456_009G009200 [Gossypium raimondii]"]
["c10585.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_007G214300 [Gossypium raimondii]"]
["c38036.graph_c2","[T]","Signal transduction mechanisms ","Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K04733|1.26861e-98|gra:105765899|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) cysteine-rich receptor-like protein kinase 25","--","--","Protein kinase domain;; Protein tyrosine kinase","Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3","T","Signal transduction mechanisms","PREDICTED: cysteine-rich receptor-like protein kinase 10 [Gossypium hirsutum]"]
["c40572.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1","K","Transcription","hypothetical protein CCACVL1_15491 [Corchorus capsularis]"]
["c93366.graph_c0","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: intracellular protein transport (GO:0006886);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC101298116 [Fragaria vesca subsp. vesca]"]
["c48543.graph_c0","[T]","Signal transduction mechanisms ","--","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Carbohydrate-binding protein of the ER;; Protein kinase domain;; Di-glucose binding within endoplasmic reticulum","Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana OX=3702 GN=HERK1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: receptor-like protein kinase HERK 1 [Gossypium arboreum]"]
["c46099.graph_c2","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111318523 [Durio zibethinus]"]
["c44421.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","[S]","Function unknown ","PPPDE putative peptidase domain","DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV=1","S","Function unknown","PREDICTED: deSI-like protein At4g17486 [Gossypium raimondii] "]
["c27067.graph_c1","--","--","--","--","[L]","Replication, recombination and repair ","--","Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1","S","Function unknown","zinc finger BED domain-containing protein RICESLEEPER 2-like [Lactuca sativa]"]
["c28508.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: translational elongation (GO:0006414);; ","K03231|2.77425e-30|csv:105434427|K03231 elongation factor 1-alpha | (RefSeq) elongation factor 1-alpha-like","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor Tu GTP binding domain","Elongation factor 1-alpha OS=Hordeum vulgare OX=4513 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","translation elongation factor 1-alpha, partial [Phaeotremella eugeniae]"]
["c76864.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity (GO:0003849);; Biological Process: aromatic amino acid family biosynthetic process (GO:0009073);; ","K01626|1.64729e-56|fve:101314504|K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] | (RefSeq) phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like","--","--","Class-II DAHP synthetase family","Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=DAHPS2 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Fragaria vesca subsp. vesca]"]
["c44285.graph_c0","--","--","--","--","--","--","Epidermal patterning factor proteins","EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1","S","Function unknown","uncharacterized protein LOC111278824 isoform X2 [Durio zibethinus]"]
["c20426.graph_c0","--","--","--","--","[R]","General function prediction only ","gag-polypeptide of LTR copia-type","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC108468761 [Gossypium arboreum]"]
["c56081.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","K13422|2.05658e-21|tcc:TCM_005064|K13422 transcription factor MYC2 | (RefSeq) Basic helix-loop-helix DNA-binding family protein","--","--","--","Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2","K","Transcription","PREDICTED: transcription factor bHLH14 [Theobroma cacao]"]
["c51006.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD12173 [Gossypium barbadense]"]
["c31248.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: small ribosomal subunit (GO:0015935);; ","K02985|4.12673e-69|gra:105770451|K02985 small subunit ribosomal protein S3e | (RefSeq) 40S ribosomal protein S3-2-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S3, C-terminal domain","40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S3-3 [Theobroma cacao]"]
["c70988.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","K20770|3.77925e-18|gra:105789196|K20770 (+)-delta-cadinene 8-hydroxylase [EC:1.14.-.-] | (RefSeq) flavonoid 3'-monooxygenase-like","--","--","--","--","--","--","flavonoid 3&apos;-monooxygenase-like [Gossypium arboreum] "]
["c21750.graph_c0","[IR]","Lipid transport and metabolism ;; General function prediction only ","Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08248|3.33821e-47|gra:105767552|K08248 (R)-mandelonitrile lyase [EC:4.1.2.10] | (RefSeq) (R)-mandelonitrile lyase-like","[R]","General function prediction only ","GMC oxidoreductase","(R)-mandelonitrile lyase-like OS=Arabidopsis thaliana OX=3702 GN=At1g73050 PE=2 SV=1","E","Amino acid transport and metabolism","hypothetical protein GOBAR_AA26905 [Gossypium barbadense]"]
["c24761.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","K18134|8.11941e-90|gra:105781054|K18134 protein O-GlcNAc transferase [EC:2.4.1.255] | (RefSeq) uncharacterized LOC105781054","[S]","Function unknown ","--","--","S","Function unknown","hypothetical protein GOBAR_DD11161 [Gossypium barbadense]"]
["c80316.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: translation elongation factor activity (GO:0003746);; Biological Process: translational initiation (GO:0006413);; Biological Process: translational frameshifting (GO:0006452);; Molecular Function: ribosome binding (GO:0043022);; Biological Process: positive regulation of translational elongation (GO:0045901);; Biological Process: positive regulation of translational termination (GO:0045905);; ","K03263|1.85589e-33|csl:COCSUDRAFT_18132|K03263 translation initiation factor 5A | (RefSeq) eukaryotic initiation factor","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein CDD82_5240 [Ophiocordyceps australis]"]
["c44005.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: Golgi vesicle transport (GO:0048193);; ","--","--","--","Syntaxin 6, N-terminal","--","S","Function unknown","uncharacterized protein LOC111311713 isoform X3 [Durio zibethinus]"]
["c20550.graph_c0","--",";; ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein tyrosine kinase;; Protein kinase domain","Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1","S","Function unknown","resistance protein, partial [Arachis hypogaea]"]
["c15013.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02974|7.53037e-50|fve:101293313|K02974 small subunit ribosomal protein S24e | (RefSeq) 40S ribosomal protein S24-1-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S24e","40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S24-1-like [Fragaria vesca subsp. vesca]"]
["c40696.graph_c0","--","--","--","--","--","--","--","--","--","--","orf187 (mitochondrion) [Bupleurum falcatum] "]
["c64976.graph_c0","--","--","Molecular Function: solute:proton antiporter activity (GO:0015299);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","[P]","Inorganic ion transport and metabolism ","--","Cation/H(+) antiporter 28 OS=Arabidopsis thaliana OX=3702 GN=CHX28 PE=2 SV=2","P","Inorganic ion transport and metabolism","hypothetical protein GOBAR_AA05752 [Gossypium barbadense]"]
["c49184.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Cellular Component: chloroplast (GO:0009507);; ","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","--","S","Function unknown","biorientation of chromosomes in cell division protein 1-like 1 isoform X1 [Durio zibethinus] "]
["c54932.graph_c0","--","--","Molecular Function: acetyl-CoA:L-glutamate N-acetyltransferase activity (GO:0004042);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: arginine biosynthetic process (GO:0006526);; ","K14682|4.9447e-41|gra:105777304|K14682 amino-acid N-acetyltransferase [EC:2.3.1.1] | (RefSeq) probable amino-acid acetyltransferase NAGS2, chloroplastic","[E]","Amino acid transport and metabolism ","--","Probable amino-acid acetyltransferase NAGS2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NAGS2 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: probable amino-acid acetyltransferase NAGS2, chloroplastic isoform X1 [Gossypium hirsutum]"]
["c93690.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: urea cycle (GO:0000050);; Biological Process: argininosuccinate metabolic process (GO:0000053);; Molecular Function: argininosuccinate synthase activity (GO:0004055);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: arginine biosynthetic process (GO:0006526);; ","K01940|7.6536e-22|cme:CYME_CMT305C|K01940 argininosuccinate synthase [EC:6.3.4.5] | (RefSeq) argininosuccinate synthase","[E]","Amino acid transport and metabolism ","Arginosuccinate synthase","Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24830 PE=1 SV=3","E","Amino acid transport and metabolism","argininosuccinate synthase, variant 4 [Cryptococcus amylolentus CBS 6039] "]
["c18515.graph_c0","--","--","Molecular Function: actin binding (GO:0003779);; Cellular Component: actin cytoskeleton (GO:0015629);; Biological Process: actin filament depolymerization (GO:0030042);; ","K05765|2.83386e-28|gra:105797971|K05765 cofilin | (RefSeq) actin-depolymerizing factor-like","[Z]","Cytoskeleton ","Cofilin/tropomyosin-type actin-binding protein","Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF1 PE=2 SV=1","S","Function unknown","hypothetical protein B456_006G209600 [Gossypium raimondii]"]
["c43978.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: phosphoprotein phosphatase activity (GO:0004721);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K06269|0|gra:105761065|K06269 serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] | (RefSeq) serine/threonine-protein phosphatase PP1 isozyme 9-like","[TR]","--","Calcineurin-like phosphoesterase;; Serine-threonine protein phosphatase N-terminal domain","Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein B456_007G301000 [Gossypium raimondii]"]
["c71938.graph_c0","--","--","--","--","[I]","Lipid transport and metabolism ","--","--","Q","Secondary metabolites biosynthesis, transport and catabolism","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c44464.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc finger, C3HC4 type (RING finger)","E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1","S","Function unknown","uncharacterized protein LOC110424537 isoform X1 [Herrania umbratica]"]
["c92636.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Reticulon","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c37947.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Transcription intermediary factor 1-beta [Gossypium arboreum]"]
["c28794.graph_c2","[E]","Amino acid transport and metabolism ","Molecular Function: glutamate-ammonia ligase activity (GO:0004356);; Molecular Function: ATP binding (GO:0005524);; Biological Process: glutamine biosynthetic process (GO:0006542);; ","K01915|3.04549e-139|tcc:TCM_007743|K01915 glutamine synthetase [EC:6.3.1.2] | (RefSeq) Glutamine synthetase 1,4","[E]","Amino acid transport and metabolism ","Glutamine synthetase, catalytic domain","Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLN1-1 PE=1 SV=1","E","Amino acid transport and metabolism","Glutamine synthetase 1,4 [Theobroma cacao]"]
["c46169.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA15056 [Gossypium barbadense]"]
["c34061.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Cold acclimation protein WCOR413","Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=COR413IM2 PE=1 SV=1","S","Function unknown","PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like [Gossypium hirsutum]"]
["c22278.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105762896 [Gossypium raimondii] "]
["c78687.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; ","--","[S]","Function unknown ","--","U-box domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=PUB9 PE=1 SV=1","S","Function unknown","U-box domain-containing protein 9-like [Durio zibethinus] "]
["c43529.graph_c2","--","--","--","--","[R]","General function prediction only ","GAG-pre-integrase domain;; gag-polypeptide of LTR copia-type","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]"]
["c28206.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","K14515|7.0612e-08|tcc:TCM_038093|K14515 EIN3-binding F-box protein | (RefSeq) Ein3-binding f-box protein 4","--","--","--","--","--","--","PREDICTED: EIN3-binding F-box protein 1-like isoform X2 [Gossypium raimondii]"]
["c45050.graph_c0","--","--","--","--","[K]","Transcription ","Bromodomain","Transcription factor GTE12 OS=Arabidopsis thaliana OX=3702 GN=GTE12 PE=2 SV=2","BK","--","PREDICTED: transcription factor GTE12-like isoform X1 [Gossypium hirsutum]"]
["c34673.graph_c0","--","--","--","--","[R]","General function prediction only ","Fibrinogen alpha/beta chain family","--","S","Function unknown","--"]
["c33766.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","K02183|6.68403e-10|thj:104800483|K02183 calmodulin | (RefSeq) calmodulin","[T]","Signal transduction mechanisms ","--","Calmodulin-6 OS=Arabidopsis thaliana OX=3702 GN=CAM6 PE=1 SV=2","DTZ","--","hypothetical protein VIGAN_03054300 [Vigna angularis var. angularis]"]
["c36592.graph_c1","--","--","--","K11797|2.23296e-119|gra:105794811|K11797 PH-interacting protein | (RefSeq) PH-interacting protein","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: PH-interacting protein-like [Gossypium hirsutum]"]
["c65206.graph_c0","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","K07904|1.48476e-39|gra:105799529|K07904 Ras-related protein Rab-11A | (RefSeq) ras-related protein RABA4d","[U]","Intracellular trafficking, secretion, and vesicular transport ","Ras family","Ras-related protein RABA4d OS=Arabidopsis thaliana OX=3702 GN=RABA4D PE=1 SV=1","S","Function unknown","Small GTP-binding domain containing protein [Trema orientalis]"]
["c27207.graph_c0","--","--","--","--","[S]","Function unknown ","ELMO/CED-12 family","--","S","Function unknown","hypothetical protein B456_013G197400 [Gossypium raimondii]"]
["c6192.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107907875 [Gossypium hirsutum]"]
["c63044.graph_c0","--","--","Cellular Component: photosystem II (GO:0009523);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: integral component of membrane (GO:0016021);; ","K02721|3.7122e-17|osa:4327150|K02721 photosystem II PsbW protein | (RefSeq) PSBW; photosystem II reaction center W protein, chloroplastic","--","--","Photosystem II reaction centre W protein (PsbW)","Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1","S","Function unknown","PREDICTED: photosystem II reaction center W protein, chloroplastic [Oryza sativa Japonica Group] "]
["c37708.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ligase activity (GO:0016874);; ","--","--","--","--","--","S","Function unknown","NDR1/HIN1-like protein 6 [Herrania umbratica] "]
["c4962.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","--","--","--","--","--","--","LOW QUALITY PROTEIN: ABC transporter G family member 9-like [Durio zibethinus]"]
["c46167.graph_c0","--","--","--","--","--","--","NYN domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105804055 [Gossypium raimondii] "]
["c32423.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: glycine-tRNA ligase activity (GO:0004820);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: glycyl-tRNA aminoacylation (GO:0006426);; ","K01880|6.84429e-61|gra:105779784|K01880 glycyl-tRNA synthetase [EC:6.1.1.14] | (RefSeq) glycine--tRNA ligase 1, mitochondrial-like","[J]","Translation, ribosomal structure and biogenesis ","Anticodon binding domain","Glycine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=At1g29880 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","glycine--tRNA ligase, mitochondrial 1-like [Durio zibethinus]"]
["c89894.graph_c0","--","--","--","--","--","--","--","--","--","--","probable serine/threonine-protein kinase PBL19 isoform X2 [Durio zibethinus] "]
["c68825.graph_c0","--","--","Molecular Function: nutrient reservoir activity (GO:0045735);; ","--","--","--","Cupin","13S globulin basic chain OS=Fagopyrum esculentum OX=3617 PE=1 SV=1","S","Function unknown","PREDICTED: glutelin type-A 1-like [Gossypium hirsutum]"]
["c36426.graph_c0","--","--","Molecular Function: SNARE binding (GO:0000149);; Molecular Function: SNAP receptor activity (GO:0005484);; Biological Process: exocytosis (GO:0006887);; Biological Process: vesicle fusion (GO:0006906);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: SNARE complex (GO:0031201);; ","K08511|1.50506e-13|gra:105803275|K08511 vesicle-associated membrane protein 72 | (RefSeq) vesicle-associated membrane protein 722","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana OX=3702 GN=VAMP726 PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein B456_007G153200 [Gossypium raimondii]"]
["c9336.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","Zinc finger, C3HC4 type (RING finger)","MND1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIP1 PE=1 SV=1","--","--","hypothetical protein B456_008G227600 [Gossypium raimondii]"]
["c14671.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02984|1.32738e-62|sind:105158399|K02984 small subunit ribosomal protein S3Ae | (RefSeq) 40S ribosomal protein S3a-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal S3Ae family","40S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S3a-like [Sesamum indicum]"]
["c36245.graph_c1","--","--","Molecular Function: ionotropic glutamate receptor activity (GO:0004970);; Molecular Function: extracellular-glutamate-gated ion channel activity (GO:0005234);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ion transmembrane transport (GO:0034220);; Biological Process: ionotropic glutamate receptor signaling pathway (GO:0035235);; ","K05387|1.19716e-102|gra:105764777|K05387 glutamate receptor, ionotropic, plant | (RefSeq) glutamate receptor 2.7-like","[PET]","--","Receptor family ligand binding region;; Periplasmic binding protein","Glutamate receptor 1.4 OS=Arabidopsis thaliana OX=3702 GN=GLR1.4 PE=2 SV=2","S","Function unknown","glutamate receptor 2.2-like isoform X4 [Durio zibethinus]"]
["c20150.graph_c0","--","--","--","--","--","--","Phosphate-induced protein 1 conserved region","Protein EXORDIUM-like 2 OS=Arabidopsis thaliana OX=3702 GN=EXL2 PE=2 SV=1","S","Function unknown","PREDICTED: protein EXORDIUM-like 6 [Gossypium hirsutum]"]
["c65938.graph_c0","--","--","Molecular Function: lipid binding (GO:0008289);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","--","Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2","S","Function unknown","PREDICTED: synaptotagmin-1-like isoform X2 [Gossypium raimondii] "]
["c62200.graph_c0","--","--","--","--","[P]","Inorganic ion transport and metabolism ","Metallothionein","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c83080.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: plastid (GO:0009536);; ","K08864|8.84131e-33|mus:103993848|K08864 tousled-like kinase [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase TOUSLED","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana OX=3702 GN=TOUSLED PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein BU14_0118s0028 [Porphyra umbilicalis]"]
["c36757.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA);; Holliday junction DNA helicase ruvB N-terminus;; AAA domain (dynein-related subfamily);; Magnesium chelatase, subunit ChlI","ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana OX=3702 GN=FIGL1 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein CICLE_v100185462mg, partial [Citrus clementina] "]
["c41090.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|2.03189e-124|gra:105773587|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor MYB44-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1","K","Transcription","transcription factor MYB44-like [Durio zibethinus]"]
["c17928.graph_c0","--","--","--","K00262|1.32982e-09|gra:105777306|K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4] | (RefSeq) NADP-specific glutamate dehydrogenase","[E]","Amino acid transport and metabolism ","--","--","E","Amino acid transport and metabolism","hypothetical protein B456_011G067700 [Gossypium raimondii]"]
["c45911.graph_c1","--","--","--","--","--","--","Aluminium induced protein","--","--","--","--"]
["c30783.graph_c0","--","--","Molecular Function: core promoter sequence-specific DNA binding (GO:0001046);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Cellular Component: nucleus (GO:0005634);; Biological Process: positive regulation of transcription from RNA polymerase II promoter (GO:0045944);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor bHLH7 OS=Arabidopsis thaliana OX=3702 GN=BHLH7 PE=1 SV=1","K","Transcription","hypothetical protein CRG98_012375 [Punica granatum]"]
["c26443.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA33676 [Gossypium barbadense]"]
["c60864.graph_c0","--","--","Biological Process: shoot system development (GO:0048367);; ","--","--","--","--","--","K","Transcription","PREDICTED: BEL1-like homeodomain protein 4 [Gossypium raimondii] "]
["c47087.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108454443 isoform X2 [Gossypium arboreum] "]
["c50645.graph_c0","--","--","Molecular Function: Rho guanyl-nucleotide exchange factor activity (GO:0005089);; Biological Process: positive regulation of GTPase activity (GO:0043547);; ","--","--","--","PRONE (Plant-specific Rop nucleotide exchanger)","Rop guanine nucleotide exchange factor 11 OS=Arabidopsis thaliana OX=3702 GN=ROPGEF11 PE=1 SV=2","S","Function unknown","hypothetical protein GOBAR_DD00438 [Gossypium barbadense]"]
["c46759.graph_c1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Biological Process: single-organism metabolic process (GO:0044710);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: dioxygenase activity (GO:0051213);; ","--","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","Protein SRG1 OS=Arabidopsis thaliana OX=3702 GN=SRG1 PE=2 SV=1","S","Function unknown","PREDICTED: protein SRG1-like [Gossypium arboreum]"]
["c3872.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein PV07_02292 [Cladophialophora immunda] "]
["c32209.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF3339)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107896092 [Gossypium hirsutum] "]
["c89146.graph_c0","--","--","Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","K15397|2.64728e-41|fve:101311234|K15397 3-ketoacyl-CoA synthase [EC:2.3.1.199] | (RefSeq) 3-ketoacyl-CoA synthase 21-like","--","--","FAE1/Type III polyketide synthase-like protein","3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana OX=3702 GN=KCS19 PE=2 SV=1","I","Lipid transport and metabolism","PREDICTED: 3-ketoacyl-CoA synthase 21-like [Fragaria vesca subsp. vesca]"]
["c79698.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c44299.graph_c0","--","--","--","--","[S]","Function unknown ","--","Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0176400 PE=2 SV=1","S","Function unknown","PREDICTED: zinc finger CCCH domain-containing protein 34-like [Gossypium arboreum]"]
["c40131.graph_c0","--","--","--","--","[A]","RNA processing and modification ","--","--","T","Signal transduction mechanisms","PREDICTED: uncharacterized protein LOC108476810 [Gossypium arboreum]"]
["c35818.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal small subunit assembly (GO:0000028);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02966|3.08631e-98|fve:101292310|K02966 small subunit ribosomal protein S19e | (RefSeq) 40S ribosomal protein S19-3","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S19e","40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S19-3 [Fragaria vesca subsp. vesca]"]
["c9735.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana OX=3702 GN=At1g64760 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: glucan endo-1,3-beta-glucosidase 8-like [Gossypium arboreum]"]
["c25342.graph_c0","[G]","Carbohydrate transport and metabolism ","--","--","[G]","Carbohydrate transport and metabolism ","Histidine phosphatase superfamily (branch 1)","Phosphoglycerate mutase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g58280 PE=2 SV=1","S","Function unknown","phosphoglycerate mutase-like protein 1 [Durio zibethinus]"]
["c82118.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Dienelactone hydrolase family","--","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Fragaria vesca subsp. vesca]"]
["c47442.graph_c0","[HT]","Coenzyme transport and metabolism ;; Signal transduction mechanisms ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","[R]","General function prediction only ","ABC1 family","Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABC1K7 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein sll1770 [Theobroma cacao]"]
["c85204.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ligase activity (GO:0016874);; ","K10587|1.26596e-27|smo:SELMODRAFT_125303|K10587 ubiquitin-protein ligase E3 A [EC:2.3.2.26] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","HECT-domain (ubiquitin-transferase)","E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana OX=3702 GN=UPL1 PE=1 SV=3","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein BCR43DRAFT_481192 [Syncephalastrum racemosum]"]
["c10069.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: catalytic activity (GO:0003824);; Molecular Function: coenzyme binding (GO:0050662);; ","K13082|8.68125e-176|tcc:TCM_034078|K13082 bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [EC:1.1.1.219 1.1.1.234] | (RefSeq) Dihydroflavonol-4-reductase","[V]","Defense mechanisms ","NAD dependent epimerase/dehydratase family;; 3-beta hydroxysteroid dehydrogenase/isomerase family;; Male sterility protein","Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica OX=3750 GN=DFR PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","dihydroflavonol 4-reductase-like [Durio zibethinus]"]
["c36244.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","hypothetical protein VITISV_016612 [Vitis vinifera]"]
["c92890.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c75675.graph_c0","--","--","Biological Process: malate transport (GO:0015743);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Aluminium activated malate transporter","Aluminum-activated malate transporter 4 OS=Arabidopsis thaliana OX=3702 GN=ALMT4 PE=3 SV=1","S","Function unknown","hypothetical protein B456_008G169600 [Gossypium raimondii]"]
["c26629.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K20716|7.25343e-70|gra:105778141|K20716 mitogen-activated protein kinase kinase kinase 17/18 | (RefSeq) mitogen-activated protein kinase kinase kinase 2-like","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Mitogen-activated protein kinase kinase kinase 17 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK17 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA21536 [Gossypium barbadense]"]
["c77720.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein LSAT_7X96720 [Lactuca sativa]"]
["c29646.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: membrane (GO:0016020);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-like zinc finger;; RING-H2 zinc finger domain;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; Anaphase-promoting complex subunit 11 RING-H2 finger","RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA01029 [Gossypium barbadense]"]
["c10278.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[I]","Lipid transport and metabolism ","alpha/beta hydrolase fold;; Alpha/beta hydrolase family","--","S","Function unknown","hypothetical protein GOBAR_DD01951 [Gossypium barbadense]"]
["c49773.graph_c1","[P]","Inorganic ion transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: metal ion binding (GO:0046872);; ","K01537|0|tcc:TCM_041938|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) Endoplasmic reticulum [ER]-type calcium ATPase isoform 1","[P]","Inorganic ion transport and metabolism ","E1-E2 ATPase;; Cation transporter/ATPase, N-terminus","Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana OX=3702 GN=ECA4 PE=2 SV=2","P","Inorganic ion transport and metabolism","calcium-transporting ATPase 4, endoplasmic reticulum-type-like [Durio zibethinus]"]
["c51012.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: metal ion binding (GO:0046872);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-like zinc finger;; RING-H2 zinc finger domain;; Zinc finger, C3HC4 type (RING finger)","RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_010G195900 [Gossypium raimondii]"]
["c29459.graph_c0","[R]","General function prediction only ","Molecular Function: monooxygenase activity (GO:0004497);; ","--","--","--","Nitronate monooxygenase","--","S","Function unknown","PREDICTED: nitronate monooxygenase-like [Gossypium hirsutum]"]
["c24835.graph_c1","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107891099 [Gossypium hirsutum]"]
["c59601.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: calcium ion transport (GO:0006816);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: ion binding (GO:0043167);; ","K01537|5.18831e-39|gra:105800556|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) putative calcium-transporting ATPase 13, plasma membrane-type","[P]","Inorganic ion transport and metabolism ","--","Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=ACA12 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Gossypium arboreum]"]
["c33015.graph_c0","[H]","Coenzyme transport and metabolism ","Cellular Component: chloroplast (GO:0009507);; ","--","[S]","Function unknown ","Uncharacterised protein family UPF0047","--","S","Function unknown","PREDICTED: UPF0047 protein C4A8.02c [Gossypium raimondii] "]
["c15600.graph_c0","--","--","Molecular Function: prenylcysteine oxidase activity (GO:0001735);; Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: lyase activity (GO:0016829);; Biological Process: prenylated protein catabolic process (GO:0030327);; Biological Process: prenylcysteine catabolic process (GO:0030328);; Biological Process: farnesyl diphosphate metabolic process (GO:0045338);; Biological Process: oxidation-reduction process (GO:0055114);; ","K05906|0|tcc:TCM_001552|K05906 prenylcysteine oxidase / farnesylcysteine lyase [EC:1.8.3.5 1.8.3.6] | (RefSeq) Farnesylcysteine lyase","--","--","Prenylcysteine lyase;; Flavin containing amine oxidoreductase;; NAD(P)-binding Rossmann-like domain","Farnesylcysteine lyase OS=Arabidopsis thaliana OX=3702 GN=FLCY PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: farnesylcysteine lyase [Theobroma cacao]"]
["c36169.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein AXF42_Ash019530 [Apostasia shenzhenica]"]
["c48665.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA);; AAA domain (dynein-related subfamily);; Holliday junction DNA helicase ruvB N-terminus;; Peptidase family M41","Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSHI1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_004G132200 [Gossypium raimondii]"]
["c47316.graph_c1","--","--","Molecular Function: glycogenin glucosyltransferase activity (GO:0008466);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[G]","Carbohydrate transport and metabolism ","--","Inositol phosphorylceramide glucuronosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=IPUT1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1-like [Glycine max] "]
["c39906.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Molecular Function: isomerase activity (GO:0016853);; ","--","--","--","--","--","S","Function unknown","PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X1 [Gossypium arboreum] "]
["c46636.graph_c3","[S]","Function unknown ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[S]","Function unknown ","Saccharopine dehydrogenase NADP binding domain;; Uncharacterized ACR, COG1678","Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana OX=3702 GN=At5g39410 PE=1 SV=2","S","Function unknown","PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 [Gossypium hirsutum]"]
["c27023.graph_c0","--","--","--","--","--","--","Chlorophyll A-B binding protein","Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1","S","Function unknown","PREDICTED: early light-induced protein 1, chloroplastic-like [Gossypium hirsutum]"]
["c81405.graph_c0","--","--","--","--","--","--","Immunoglobulin V-set domain","--","S","Function unknown","--"]
["c45148.graph_c1","--","--","--","--","[TO]","--","OTU-like cysteine protease","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC107942769 [Gossypium hirsutum]"]
["c32774.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","[V]","Defense mechanisms ","NAD dependent epimerase/dehydratase family;; NAD(P)H-binding;; 3-beta hydroxysteroid dehydrogenase/isomerase family;; GDP-mannose 4,6 dehydratase;; NmrA-like family;; Male sterility protein;; KR domain;; Polysaccharide biosynthesis protein","Putative anthocyanidin reductase OS=Ginkgo biloba OX=3311 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: dihydroflavonol-4-reductase isoform X1 [Gossypium hirsutum] "]
["c93975.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: translational initiation (GO:0006413);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein IQ06DRAFT_289858 [Stagonospora sp. SRC1lsM3a]"]
["c46952.graph_c1","--","--","--","--","--","--","--","Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana OX=3702 GN=MED19A PE=1 SV=1","S","Function unknown","PREDICTED: mediator of RNA polymerase II transcription subunit 19a isoform X2 [Theobroma cacao]"]
["c40442.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: large ribosomal subunit (GO:0015934);; ","K02876|8.21874e-143|tcc:TCM_007684|K02876 large subunit ribosomal protein L15 | (RefSeq) Ribosomal protein L18e/L15 superfamily protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A","--","J","Translation, ribosomal structure and biogenesis","PREDICTED: 50S ribosomal protein L15-like isoform X1 [Gossypium hirsutum]"]
["c95639.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","--","--","Z","Cytoskeleton","--"]
["c89172.graph_c0","--","--","Biological Process: maturation of LSU-rRNA (GO:0000470);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02865|1.84507e-11|gsl:Gasu_29500|K02865 large subunit ribosomal protein L10Ae | (RefSeq) 60S ribosomal protein L1Ae","[J]","Translation, ribosomal structure and biogenesis ","--","60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","60s ribosomal protein l1-a (l10a) [Trichosporon asahii var. asahii CBS 2479] "]
["c15316.graph_c0","--","--","Molecular Function: 3-oxo-5-alpha-steroid 4-dehydrogenase activity (GO:0003865);; Molecular Function: enoyl-[acyl-carrier-protein] reductase (NADH) activity (GO:0004318);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: trans-2-enoyl-CoA reductase (NADPH) activity (GO:0019166);; Biological Process: oxidation-reduction process (GO:0055114);; ","K10258|5.04679e-31|fve:101313554|K10258 very-long-chain enoyl-CoA reductase [EC:1.3.1.93] | (RefSeq) very-long-chain enoyl-CoA reductase","[I]","Lipid transport and metabolism ","--","Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana OX=3702 GN=ECR PE=1 SV=1","S","Function unknown","PREDICTED: very-long-chain enoyl-CoA reductase [Fragaria vesca subsp. vesca]"]
["c32788.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[I]","Lipid transport and metabolism ","Lipase (class 3);; C2 domain","Protein C2-DOMAIN ABA-RELATED 7 OS=Arabidopsis thaliana OX=3702 GN=CAR7 PE=1 SV=1","S","Function unknown","putative feruloyl esterase A [Gossypium arboreum]"]
["c43225.graph_c0","--","--","Cellular Component: Golgi membrane (GO:0000139);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: Golgi organization (GO:0007030);; Biological Process: protein secretion (GO:0009306);; Biological Process: unidimensional cell growth (GO:0009826);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Eukaryotic protein of unknown function (DUF846)","Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana OX=3702 GN=ECH PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Gossypium raimondii] "]
["c51934.graph_c0","--","--","--","K19042|2.40193e-07|gra:105785921|K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] | (RefSeq) probable BOI-related E3 ubiquitin-protein ligase 3","--","--","--","--","--","--","hypothetical protein COLO4_17340 [Corchorus olitorius]"]
["c6775.graph_c1","--","--","--","--","--","--","Regulatory CLIP domain of proteinases","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c65220.graph_c0","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; Molecular Function: oxidoreductase activity (GO:0016491);; ","--","--","--","--","--","--","--","subtilisin-like protease SBT4.15 [Durio zibethinus]"]
["c36608.graph_c0","--","--","Molecular Function: actin filament binding (GO:0051015);; Biological Process: actin filament bundle assembly (GO:0051017);; ","--","[Z]","Cytoskeleton ","Gelsolin repeat","Villin-2 OS=Arabidopsis thaliana OX=3702 GN=VLN2 PE=1 SV=2","S","Function unknown","villin-2-like [Durio zibethinus]"]
["c43540.graph_c0","--","--","Biological Process: regionalization (GO:0003002);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleus (GO:0005634);; Biological Process: response to hormone (GO:0009725);; Biological Process: production of miRNAs involved in gene silencing by miRNA (GO:0035196);; ","--","--","--","Double-stranded RNA binding motif","Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1","S","Function unknown","PREDICTED: double-stranded RNA-binding protein 1-like [Gossypium hirsutum]"]
["c45041.graph_c0","--","--","--","K02705|0|tcc:ThcaC_p017|K02705 photosystem II CP43 chlorophyll apoprotein | (RefSeq) psbC; photosystem II CP43 chlorophyll apoprotein","--","--","Photosystem II protein;; Photosynthetic reaction centre protein","Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1","S","Function unknown","photosystem II 44 kDa protein (chloroplast) [Corylus avellana] "]
["c37242.graph_c0","--","--","Cellular Component: mitochondrial outer membrane (GO:0005741);; Biological Process: transmembrane transport (GO:0055085);; ","K15040|8.64422e-110|gra:105782948|K15040 voltage-dependent anion channel protein 2 | (RefSeq) mitochondrial outer membrane protein porin 2-like","[P]","Inorganic ion transport and metabolism ","--","Mitochondrial outer membrane protein porin 5 OS=Oryza sativa subsp. japonica OX=39947 GN=VDAC5 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: mitochondrial outer membrane protein porin 2-like isoform X1 [Gossypium hirsutum] "]
["c85586.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Biological Process: actin filament organization (GO:0007015);; Biological Process: multidimensional cell growth (GO:0009825);; Biological Process: trichome morphogenesis (GO:0010090);; ","K18584|4.41253e-33|pper:PRUPE_ppa006099mg|K18584 actin-related protein 3 | (RefSeq) hypothetical protein","[Z]","Cytoskeleton ","Actin","Actin-related protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ARP3 PE=2 SV=1","Z","Cytoskeleton","actin-related protein 3 [Rhizophagus irregularis DAOM 197198w] "]
["c65575.graph_c0","--","--","--","--","--","--","--","--","--","--","ferrochelatase-2, chloroplastic-like [Herrania umbratica]"]
["c79198.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: 3-isopropylmalate dehydratase activity (GO:0003861);; Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: leucine biosynthetic process (GO:0009098);; Cellular Component: 3-isopropylmalate dehydratase complex (GO:0009316);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; ","K01702|4.18238e-34|ota:Ot03g02820|K01702 3-isopropylmalate dehydratase [EC:4.2.1.33] | (RefSeq) LeuA (ISS)","[E]","Amino acid transport and metabolism ","Aconitase family (aconitate hydratase)","--","E","Amino acid transport and metabolism","hypothetical protein SS1G_09787 [Sclerotinia sclerotiorum 1980 UF-70] "]
["c2849.graph_c0","[C]","Energy production and conversion ","Molecular Function: binding (GO:0005488);; Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616);; ","K11165|6.1656e-13|ppp:PHYPADRAFT_195117|K11165 dehydrogenase/reductase SDR family member 7 [EC:1.1.-.-] | (RefSeq) hypothetical protein","[QR]","--","short chain dehydrogenase;; Enoyl-(Acyl carrier protein) reductase","11-beta-hydroxysteroid dehydrogenase-like 6 OS=Arabidopsis thaliana OX=3702 GN=HSD6 PE=2 SV=1","S","Function unknown","NAD(P)-binding domain-containing protein [Rozella allomycis CSF55]"]
["c48766.graph_c0","--","--","Cellular Component: spindle (GO:0005819);; Cellular Component: phragmoplast (GO:0009524);; Molecular Function: microtubule minus-end binding (GO:0051011);; Biological Process: spindle assembly (GO:0051225);; Cellular Component: HAUS complex (GO:0070652);; ","--","--","--","HAUS augmin-like complex subunit 6 N-terminus","AUGMIN subunit 6 OS=Arabidopsis thaliana OX=3702 GN=AUG6 PE=1 SV=1","S","Function unknown","AUGMIN subunit 6-like [Durio zibethinus]"]
["c23124.graph_c0","--","--","--","--","[W]","Extracellular structures ","Galactoside-binding lectin","--","S","Function unknown","--"]
["c49486.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: methionine adenosyltransferase activity (GO:0004478);; Molecular Function: ATP binding (GO:0005524);; Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556);; Biological Process: one-carbon metabolic process (GO:0006730);; Molecular Function: metal ion binding (GO:0046872);; ","K00789|0|gra:105791487|K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] | (RefSeq) S-adenosylmethionine synthase 2","[H]","Coenzyme transport and metabolism ","S-adenosylmethionine synthetase, C-terminal domain;; S-adenosylmethionine synthetase, central domain;; S-adenosylmethionine synthetase, N-terminal domain","S-adenosylmethionine synthase 2 OS=Elaeagnus umbellata OX=43233 GN=SAMS2 PE=2 SV=1","H","Coenzyme transport and metabolism","PREDICTED: S-adenosylmethionine synthase 2 [Gossypium raimondii] "]
["c62973.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","--","--","--","Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 OS=Arabidopsis thaliana OX=3702 GN=OCP3 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD36367 [Gossypium barbadense]"]
["c34059.graph_c0","--","--","--","K15692|4.24413e-29|smo:SELMODRAFT_67002|K15692 E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; PA domain;; RING-like zinc finger;; RING-H2 zinc finger domain;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger)","Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein SELMODRAFT_67002, partial [Selaginella moellendorffii] "]
["c45227.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","hypothetical protein B456_010G168300 [Gossypium raimondii]"]
["c16090.graph_c0","[LK]","Replication, recombination and repair ;; Transcription ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: membrane (GO:0016020);; Biological Process: vesicle-mediated transport (GO:0016192);; ","--","[A]","RNA processing and modification ","Helicase conserved C-terminal domain;; DEAD/DEAH box helicase;; CarD-like/TRCF domain;; Type III restriction enzyme, res subunit","ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g02060 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: ATP-dependent DNA helicase At3g02060, chloroplastic isoform X1 [Gossypium arboreum] "]
["c14589.graph_c0","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107913215 isoform X1 [Gossypium hirsutum]"]
["c76433.graph_c0","[C]","Energy production and conversion ","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: oxidation-reduction process (GO:0055114);; ","K02638|1.05101e-31|cam:101495137|K02638 plastocyanin | (RefSeq) plastocyanin B'/B''-like","--","--","Copper binding proteins, plastocyanin/azurin family","Plastocyanin, chloroplastic OS=Silene latifolia subsp. alba OX=52853 GN=PETE PE=1 SV=1","C","Energy production and conversion","PREDICTED: plastocyanin B&apos;/B&apos;&apos;-like [Cicer arietinum]"]
["c46033.graph_c0","--","--","--","K07562|0|gra:105798257|K07562 nonsense-mediated mRNA decay protein 3 | (RefSeq) 60S ribosomal export protein NMD3-like","[J]","Translation, ribosomal structure and biogenesis ","NMD3 family","Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum OX=4113 PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","PREDICTED: 60S ribosomal export protein NMD3-like [Gossypium raimondii] "]
["c36935.graph_c0","--","--","Molecular Function: ligase activity (GO:0016874);; ","--","--","--","--","Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula OX=3880 GN=LIN PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA33458 [Gossypium barbadense]"]
["c16458.graph_c0","--","--","Biological Process: metabolic process (GO:0008152);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","--","[GC]","--","--","UDP-glycosyltransferase 71D1 OS=Arabidopsis thaliana OX=3702 GN=UGT71D1 PE=2 SV=1","--","--","PREDICTED: UDP-glycosyltransferase 71K1 [Theobroma cacao]"]
["c57431.graph_c0","--","--","--","K08472|1.3464e-07|gra:105801162|K08472 mlo protein | (RefSeq) MLO-like protein 1","--","--","Mlo family","MLO-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=MLO1 PE=1 SV=1","--","--","MLO-like protein 1 [Carica papaya]"]
["c88546.graph_c0","--","--","Molecular Function: beta-galactosidase activity (GO:0004565);; Cellular Component: cell wall (GO:0005618);; Cellular Component: vacuole (GO:0005773);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","[G]","Carbohydrate transport and metabolism ","--","Beta-galactosidase 14 OS=Arabidopsis thaliana OX=3702 GN=BGAL14 PE=2 SV=2","G","Carbohydrate transport and metabolism","beta-galactosidase 13-like [Dorcoceras hygrometricum]"]
["c7251.graph_c1","--","--","--","--","--","--","--","--","--","--","PREDICTED: light-inducible protein CPRF2-like [Gossypium raimondii] "]
["c21525.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: cell wall (GO:0005618);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: proteolysis (GO:0006508);; Biological Process: maintenance of meristem identity (GO:0010074);; Biological Process: regulation of growth (GO:0040008);; ","--","--","--","Subtilase family","Subtilisin-like protease SBT5.4 OS=Arabidopsis thaliana OX=3702 GN=SBT5.4 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","subtilisin-like protease sbt5.4 [Quercus suber]"]
["c37721.graph_c1","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: translational initiation (GO:0006413);; Biological Process: response to virus (GO:0009615);; Biological Process: response to abscisic acid (GO:0009737);; ","K03260|1.04406e-86|gra:105790302|K03260 translation initiation factor 4G | (RefSeq) eukaryotic translation initiation factor 4G-like","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana OX=3702 GN=EIF4G PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like [Durio zibethinus]"]
["c40814.graph_c0","[B]","Chromatin structure and dynamics ","Molecular Function: DNA binding (GO:0003677);; ","K15223|7.86031e-89|gra:105803885|K15223 upstream activation factor subunit UAF30 | (RefSeq) upstream activation factor subunit UAF30-like","[K]","Transcription ","SWIB/MDM2 domain;; DEK C terminal domain;; SWIB/MDM2 domain","--","B","Chromatin structure and dynamics","PREDICTED: upstream activation factor subunit spp27-like isoform X3 [Gossypium arboreum]"]
["c89676.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein SNOG_03106 [Parastagonospora nodorum SN15] "]
["c37725.graph_c1","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: metabolic process (GO:0008152);; Biological Process: pollen tube growth (GO:0009860);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: dihydroceramidase activity (GO:0071633);; Cellular Component: pollen tube (GO:0090406);; Biological Process: regulation of stomatal opening (GO:1902456);; ","--","--","--","Protein of unknown function (DUF616)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107914979 [Gossypium hirsutum]"]
["c15144.graph_c0","[C]","Energy production and conversion ","Molecular Function: catalytic activity (GO:0003824);; ","--","--","--","Protein of unknown function (DUF561)","Uncharacterized protein ycf23 OS=Pyropia yezoensis OX=2788 GN=ycf23 PE=3 SV=1","S","Function unknown","PREDICTED: uncharacterized protein ycf23-like [Fragaria vesca subsp. vesca]"]
["c62872.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD09125 [Gossypium barbadense]"]
["c39283.graph_c0","--","--","--","--","--","--","Glycine rich protein family","--","--","--","--"]
["c38508.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein SPPG_05133 [Spizellomyces punctatus DAOM BR117] "]
["c15704.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum OX=4565 GN=GLC1 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Gossypium raimondii]"]
["c45039.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF677);; Protein BYPASS1-related","UPF0496 protein At2g18630 OS=Arabidopsis thaliana OX=3702 GN=At2g18630 PE=2 SV=3","S","Function unknown","PREDICTED: UPF0496 protein At2g18630-like [Gossypium raimondii] "]
["c27856.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108473367 [Gossypium arboreum]"]
["c46892.graph_c0","--","--","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Biological Process: trichome morphogenesis (GO:0010090);; Cellular Component: myosin complex (GO:0016459);; Molecular Function: identical protein binding (GO:0042802);; Biological Process: gynoecium development (GO:0048467);; Biological Process: Golgi localization (GO:0051645);; Biological Process: leaf pavement cell development (GO:0090436);; ","K10357|0|gra:105776708|K10357 myosin V | (RefSeq) myosin-17-like","[Z]","Cytoskeleton ","IQ calmodulin-binding motif;; Myosin head (motor domain)","Myosin-17 OS=Arabidopsis thaliana OX=3702 GN=XI-K PE=1 SV=2","Z","Cytoskeleton","PREDICTED: myosin-17-like [Gossypium raimondii] "]
["c33026.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","K08770|3.86722e-10|pvu:PHAVU_003G1236000|K08770 ubiquitin C | (RefSeq) hypothetical protein","[OR]","--","--","Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: polyubiquitin 3-like [Gossypium arboreum]"]
["c46847.graph_c0","--","--","--","--","[S]","Function unknown ","Membrane transport protein;; Membrane transport protein","Protein PIN-LIKES 1 OS=Arabidopsis thaliana OX=3702 GN=PILS1 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized transporter YBR287W-like [Gossypium hirsutum] "]
["c53215.graph_c0","--","--","Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K08869|3.92817e-18|gra:105767429|K08869 aarF domain-containing kinase | (RefSeq) hypothetical protein","[R]","General function prediction only ","--","--","V","Defense mechanisms","PREDICTED: uncharacterized protein LOC107937905 isoform X2 [Gossypium hirsutum]"]
["c41002.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","K11583|7.81774e-20|tcc:TCM_026181|K11583 serine/threonine-protein phosphatase 2A regulatory subunit B'' | (RefSeq) Calcium-binding EF-hand family protein isoform 1","[A]","RNA processing and modification ","--","Serine/threonine protein phosphatase 2A regulatory subunit B&apos;&apos;beta OS=Arabidopsis thaliana OX=3702 GN=B&apos;&apos;BETA PE=1 SV=1","T","Signal transduction mechanisms","serine/threonine-protein phosphatase 2A regulatory subunit B&apos;&apos; subunit alpha-like protein [Corchorus olitorius]"]
["c455.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: lyase activity (GO:0016829);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108488969 [Gossypium arboreum] "]
["c22441.graph_c1","[E]","Amino acid transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; ","--","[R]","General function prediction only ","Aminotransferase class-V","--","E","Amino acid transport and metabolism","PREDICTED: probable cysteine desulfurase [Gossypium arboreum]"]
["c38505.graph_c0","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Cellular Component: integral component of membrane (GO:0016021);; ","K04392|2.67276e-49|pop:POPTR_0012s07920g|K04392 Ras-related C3 botulinum toxin substrate 1 | (RefSeq) hypothetical protein","[R]","General function prediction only ","--","Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RAC4 PE=2 SV=1","S","Function unknown","hypothetical protein B456_008G297200 [Gossypium raimondii]"]
["c33105.graph_c0","--","--","--","--","--","--","--","Calmodulin-binding protein 60 B OS=Arabidopsis thaliana OX=3702 GN=CBP60B PE=2 SV=1","S","Function unknown","calmodulin-binding protein 60 B [Herrania umbratica] "]
["c60798.graph_c0","--","--","--","K14800|1.98696e-37|tcc:TCM_020638|K14800 pre-rRNA-processing protein TSR2 | (RefSeq) Pre-rRNA-processing protein TSR2","[S]","Function unknown ","Pre-rRNA-processing protein TSR2","--","S","Function unknown","PREDICTED: pre-rRNA-processing protein TSR2 homolog [Gossypium hirsutum] "]
["c78339.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; ","--","[E]","Amino acid transport and metabolism ","Cys/Met metabolism PLP-dependent enzyme","--","E","Amino acid transport and metabolism","hypothetical protein BAUCODRAFT_62936 [Baudoinia panamericana UAMH 10762] "]
["c142.graph_c1","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Biological Process: metabolic process (GO:0008152);; Molecular Function: terpene synthase activity (GO:0010333);; ","--","--","--","Terpene synthase family, metal binding domain","(-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1","--","--","PREDICTED: (-)-alpha-pinene synthase-like [Gossypium hirsutum]"]
["c33186.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107934036 [Gossypium hirsutum] "]
["c31236.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter;; Plant PDR ABC transporter associated","Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1","V","Defense mechanisms","PREDICTED: pleiotropic drug resistance protein 3-like isoform X4 [Gossypium raimondii]"]
["c33081.graph_c0","[K]","Transcription ","--","--","--","--","Leucine rich repeat;; Protein tyrosine kinase;; Protein kinase domain;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana OX=3702 GN=PXC3 PE=2 SV=1","S","Function unknown","leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 isoform X2 [Durio zibethinus]"]
["c80052.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; ","--","[UR]","--","--","Dynamin-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=DRP1C PE=1 SV=2","S","Function unknown","PREDICTED: dynamin-related protein 1C-like isoform X1 [Gossypium arboreum]"]
["c73169.graph_c0","[Z]","Cytoskeleton ","Molecular Function: ATP binding (GO:0005524);; ","K05692|1.14181e-38|pda:103700236|K05692 actin beta/gamma 1 | (RefSeq) actin, muscle","[Z]","Cytoskeleton ","Actin","Actin OS=Volvox carteri OX=3067 PE=3 SV=1","Z","Cytoskeleton","actin, partial [Undaria pinnatifida]"]
["c16943.graph_c0","--","--","--","--","[S]","Function unknown ","C-terminal region of Mon2 protein","--","S","Function unknown","protein MON2 homolog isoform X5 [Durio zibethinus]"]
["c30266.graph_c1","--","--","Molecular Function: actin binding (GO:0003779);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","Protein NETWORKED 1D OS=Arabidopsis thaliana OX=3702 GN=NET1D PE=3 SV=1","S","Function unknown","PREDICTED: protein NETWORKED 1D-like [Gossypium hirsutum] "]
["c38742.graph_c0","--","--","--","--","[L]","Replication, recombination and repair ","TLD","--","L","Replication, recombination and repair","hypothetical protein M569_04766, partial [Genlisea aurea]"]
["c36069.graph_c0","--","--","Biological Process: carbohydrate transport (GO:0008643);; Cellular Component: membrane (GO:0016020);; ","K15382|1.37583e-107|tcc:TCM_029586|K15382 solute carrier family 50 (sugar transporter) | (RefSeq) Nodulin MtN3 family protein, putative","[R]","General function prediction only ","Sugar efflux transporter for intercellular exchange","Bidirectional sugar transporter SWEET2a OS=Sorghum bicolor OX=4558 GN=SWEET2A PE=3 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","bidirectional sugar transporter SWEET2a-like [Durio zibethinus]"]
["c57991.graph_c0","--","--","--","K10578|1.40429e-10|vvi:100260130|K10578 ubiquitin-conjugating enzyme E2 J1 [EC:2.3.2.23] | (RefSeq) ubiquitin-conjugating enzyme E2 32","[O]","Posttranslational modification, protein turnover, chaperones ","--","Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana OX=3702 GN=UBC32 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Ubiquitin-conjugating enzyme E2 32 [Ananas comosus]"]
["c50955.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: glycogen metabolic process (GO:0005977);; Cellular Component: chloroplast (GO:0009507);; Biological Process: amylopectin biosynthetic process (GO:0010021);; Molecular Function: isoamylase activity (GO:0019156);; ","K01214|0|tcc:TCM_004448|K01214 isoamylase [EC:3.2.1.68] | (RefSeq) Debranching enzyme 1","[G]","Carbohydrate transport and metabolism ","Carbohydrate-binding module 48 (Isoamylase N-terminal domain);; Alpha amylase, catalytic domain","Isoamylase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISA2 PE=1 SV=2","G","Carbohydrate transport and metabolism","isoamylase 2, chloroplastic-like [Durio zibethinus]"]
["c37826.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","Protein of unknown function (DUF1635)","--","S","Function unknown","uncharacterized protein LOC110425334 [Herrania umbratica]"]
["c25995.graph_c0","--","--","--","K13464|1.78781e-80|tcc:TCM_037495|K13464 jasmonate ZIM domain-containing protein | (RefSeq) Jasmonate-zim-domain protein 1, putative","--","--","tify domain;; Divergent CCT motif","Protein TIFY 10A OS=Arabidopsis thaliana OX=3702 GN=TIFY10A PE=1 SV=1","S","Function unknown","protein TIFY 10A [Herrania umbratica]"]
["c19605.graph_c1","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","EXS family","Phosphate transporter PHO1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=PHO1-H5 PE=2 SV=2","T","Signal transduction mechanisms","SPX and EXS domain-containing protein 1-like isoform X1 [Durio zibethinus]"]
["c94293.graph_c0","--","--","--","--","--","--","Tetratricopeptide repeat","--","S","Function unknown","--"]
["c42767.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111290750 isoform X2 [Durio zibethinus]"]
["c37762.graph_c0","--","--","Molecular Function: cyclin-dependent protein serine/threonine kinase inhibitor activity (GO:0004861);; Cellular Component: nucleus (GO:0005634);; Biological Process: cell cycle arrest (GO:0007050);; Molecular Function: kinase activity (GO:0016301);; Biological Process: negative regulation of protein serine/threonine kinase activity (GO:0071901);; ","--","--","--","Cyclin-dependent kinase inhibitor","Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=KRP3 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: cyclin-dependent kinase inhibitor 7-like isoform X1 [Gossypium raimondii] "]
["c42913.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: response to wounding (GO:0009611);; Biological Process: response to salt stress (GO:0009651);; Biological Process: response to abscisic acid (GO:0009737);; Cellular Component: external side of plasma membrane (GO:0009897);; Biological Process: stem vascular tissue pattern formation (GO:0010222);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: cutin transport (GO:0080051);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter;; ABC transporter;; AAA domain, putative AbiEii toxin, Type IV TA system;; P-loop containing region of AAA domain","ABC transporter G family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCG11 PE=1 SV=1","V","Defense mechanisms","ABC transporter G family member 11-like [Durio zibethinus]"]
["c26056.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; ","--","[BK]","--","--","Histone-lysine N-methyltransferase SUVR3 OS=Arabidopsis thaliana OX=3702 GN=SUVR3 PE=2 SV=4","S","Function unknown","hypothetical protein GOBAR_DD07213 [Gossypium barbadense]"]
["c25299.graph_c1","[C]","Energy production and conversion ","Molecular Function: ATP:ADP antiporter activity (GO:0005471);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plastid (GO:0009536);; Biological Process: ADP transport (GO:0015866);; Biological Process: ATP transport (GO:0015867);; Cellular Component: integral component of membrane (GO:0016021);; ","K03301|7.49942e-31|egr:104449479|K03301 ATP:ADP antiporter, AAA family | (RefSeq) plastidic ATP/ADP-transporter","--","--","TLC ATP/ADP transporter","Plastidic ATP/ADP-transporter OS=Solanum tuberosum OX=4113 PE=2 SV=2","C","Energy production and conversion","hypothetical protein CDL15_Pgr015051 [Punica granatum]"]
["c45280.graph_c0","--","--","Biological Process: response to molecule of bacterial origin (GO:0002237);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: defense response signaling pathway, resistance gene-independent (GO:0010204);; Cellular Component: extrinsic component of plasma membrane (GO:0019897);; Biological Process: negative regulation of plant-type hypersensitive response (GO:0034051);; ","K13456|2.06161e-139|gra:105792363|K13456 RPM1-interacting protein 4 | (RefSeq) RPM1-interacting protein 4-like","--","--","Cleavage site for pathogenic type III effector avirulence factor Avr","RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1","S","Function unknown","PREDICTED: RPM1-interacting protein 4-like [Gossypium raimondii] "]
["c89950.graph_c0","--","--","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","2-methylbutanal oxime monooxygenase OS=Manihot esculenta OX=3983 GN=CYP71E7 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","putative cytochrome P450 [Helianthus annuus]"]
["c46533.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease;; Xylanase inhibitor N-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g65240 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: aspartic proteinase-like protein 2 [Gossypium hirsutum]"]
["c18563.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CCACVL1_10609 [Corchorus capsularis]"]
["c12955.graph_c0","--","--","Molecular Function: GTPase activator activity (GO:0005096);; Biological Process: positive regulation of GTPase activity (GO:0043547);; ","K12486|5.27777e-57|gra:105775050|K12486 stromal membrane-associated protein | (RefSeq) ADP-ribosylation factor GTPase-activating protein AGD12-like","[R]","General function prediction only ","C2 domain","ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana OX=3702 GN=AGD12 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like [Gossypium raimondii] "]
["c18037.graph_c0","--","--","--","K19983|1.85871e-32|cmo:103503987|K19983 exocyst complex component 1 | (RefSeq) exocyst complex component SEC3A","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exocyst complex component Sec3","Exocyst complex component SEC3A OS=Arabidopsis thaliana OX=3702 GN=SEC3A PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA26479 [Gossypium barbadense]"]
["c9301.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","--","Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1","S","Function unknown","uncharacterized protein LOC111277500 [Durio zibethinus]"]
["c20776.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: protein WVD2-like 1 [Gossypium raimondii]"]
["c36044.graph_c1","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: transcription, DNA-templated (GO:0006351);; ","K10908|7.24271e-131|gra:105803542|K10908 DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] | (RefSeq) DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial","[KL]","--","DNA-dependent RNA polymerase","DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPOT2-SYL PE=3 SV=1","K","Transcription","PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial-like isoform X2 [Gossypium hirsutum]"]
["c84400.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: polysaccharide binding (GO:0030247);; Biological Process: recognition of pollen (GO:0048544);; ","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana OX=3702 GN=At4g03230 PE=3 SV=3","T","Signal transduction mechanisms","PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Gossypium arboreum]"]
["c42185.graph_c0","--","--","--","--","--","--","Probable zinc-ribbon domain","Protein ENHANCED DISEASE RESISTANCE 4 OS=Arabidopsis thaliana OX=3702 GN=EDR4 PE=1 SV=1","S","Function unknown","protein ENHANCED DISEASE RESISTANCE 4-like [Durio zibethinus] "]
["c24263.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K09534|4.99693e-26|gra:105775557|K09534 DnaJ homolog subfamily C member 14 | (RefSeq) uncharacterized LOC105775557","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_002G032700 [Gossypium raimondii]"]
["c35314.graph_c0","--","--","Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","K20888|0|tcc:TCM_016240|K20888 xyloglucan galactosyltransferase MUR3 [EC:2.4.1.-] | (RefSeq) Root hair specific 8","[GMW]","--","Exostosin family","Xyloglucan-specific galacturonosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GT16 PE=2 SV=1","S","Function unknown","probable xyloglucan galactosyltransferase GT20 [Durio zibethinus]"]
["c79298.graph_c0","[C]","Energy production and conversion ","Molecular Function: citrate (Si)-synthase activity (GO:0004108);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; ","K01647|5.92057e-38|crb:CARUB_v10022842mg|K01647 citrate synthase [EC:2.3.3.1] | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","Citrate synthase, C-terminal domain","Citrate synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CSY4 PE=1 SV=3","C","Energy production and conversion","mitochondrial citrate synthase precursor, partial [Aspergillus niger]"]
["c29067.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: plasma membrane (GO:0005886);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 77A4 OS=Arabidopsis thaliana OX=3702 GN=CYP77A4 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: cytochrome P450 77A4 [Gossypium raimondii]"]
["c22855.graph_c0","--","--","--","--","--","--","--","Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1","--","--","Ras-related protein RABC2b [Capsicum annuum]"]
["c44989.graph_c1","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: intracellular protein transport (GO:0006886);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","VHS domain","TOM1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=TOL2 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA23848 [Gossypium barbadense]"]
["c62571.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 81E8 OS=Medicago truncatula OX=3880 GN=CYP81E8 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","cytochrome P450 81D11-like [Durio zibethinus]"]
["c53003.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|5.28293e-180|gra:105765583|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) peroxidase 66","--","--","Peroxidase","Peroxidase 66 OS=Arabidopsis thaliana OX=3702 GN=PER66 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: peroxidase 66 [Theobroma cacao]"]
["c28645.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: calcium-dependent phospholipid binding (GO:0005544);; ","K17099|3.78051e-35|egr:104421877|K17099 annexin A13 | (RefSeq) annexin-like protein RJ4","[U]","Intracellular trafficking, secretion, and vesicular transport ","Annexin","Annexin-like protein RJ4 OS=Fragaria ananassa OX=3747 PE=2 SV=2","S","Function unknown","hypothetical protein CDL15_Pgr026948 [Punica granatum]"]
["c32644.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF679)","Protein DMP2 OS=Arabidopsis thaliana OX=3702 GN=DMP2 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107929078 [Gossypium hirsutum]"]
["c7233.graph_c0","[I]","Lipid transport and metabolism ","--","K00074|1.22948e-08|pda:103721940|K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] | (RefSeq) 3-hydroxybutyryl-CoA dehydrogenase","[I]","Lipid transport and metabolism ","3-hydroxyacyl-CoA dehydrogenase, NAD binding domain;; NAD binding domain of 6-phosphogluconate dehydrogenase;; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus","--","I","Lipid transport and metabolism","3-hydroxyacyl- dehydrogenase [Colletotrichum incanum] "]
["c92083.graph_c0","--","--","Cellular Component: endoplasmic reticulum (GO:0005783);; Molecular Function: methyltransferase activity (GO:0008168);; Molecular Function: mannan endo-1,6-alpha-mannosidase activity (GO:0008496);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: carbohydrate catabolic process (GO:0016052);; Biological Process: methylation (GO:0032259);; ","--","--","--","Glycosyl hydrolase family 76","--","G","Carbohydrate transport and metabolism","mannan endo-1,6-alpha-mannosidase DCW1 precursor [Alternaria alternata] "]
["c27851.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108465124 [Gossypium arboreum]"]
["c35567.graph_c2","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|7.06737e-31|gra:105776584|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor MYB108-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB108 OS=Arabidopsis thaliana OX=3702 GN=MYB108 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor MYB108-like [Gossypium raimondii] "]
["c90280.graph_c0","[H]","Coenzyme transport and metabolism ","Cellular Component: cytoplasm (GO:0005737);; Biological Process: vitamin E biosynthetic process (GO:0010189);; Biological Process: methylation (GO:0032259);; Molecular Function: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity (GO:0051741);; ","K05928|1.95776e-52|fve:101307130|K05928 tocopherol O-methyltransferase [EC:2.1.1.95] | (RefSeq) tocopherol O-methyltransferase, chloroplastic","[IR]","--","--","Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VTE4 PE=1 SV=2","S","Function unknown","PREDICTED: tocopherol O-methyltransferase, chloroplastic [Fragaria vesca subsp. vesca]"]
["c24923.graph_c1","[C]","Energy production and conversion ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","FAD binding domain;; Berberine and berberine like","Cannabidiolic acid synthase OS=Cannabis sativa OX=3483 GN=CBDAS PE=1 SV=1","C","Energy production and conversion","berberine bridge enzyme-like 8 [Durio zibethinus]"]
["c45860.graph_c1","--","--","--","K10406|1.85984e-57|gra:105761020|K10406 kinesin family member C2/C3 | (RefSeq) kinesin-like protein KIFC3","--","--","--","Kinesin-like protein KIN-14S OS=Arabidopsis thaliana OX=3702 GN=KIN14S PE=3 SV=1","S","Function unknown","PREDICTED: kinesin-like protein KIFC3 [Gossypium arboreum]"]
["c12561.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA09111 [Gossypium barbadense]"]
["c90393.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c32685.graph_c0","--","--","--","--","--","--","Gibberellin regulated protein","Gibberellin-regulated protein 4 OS=Arabidopsis thaliana OX=3702 GN=GASA4 PE=1 SV=2","S","Function unknown","gibberellin-regulated protein 4-like [Durio zibethinus]"]
["c37751.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; Biological Process: cell cycle (GO:0007049);; Cellular Component: DRM complex (GO:0070176);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108474597 isoform X1 [Gossypium arboreum] "]
["c24376.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC101314968 [Fragaria vesca subsp. vesca]"]
["c37348.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","RING-H2 zinc finger domain;; Ring finger domain;; Anaphase-promoting complex subunit 11 RING-H2 finger","E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Gossypium hirsutum]"]
["c6860.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","F-box/LRR-repeat protein 14-like isoform X3 [Durio zibethinus]"]
["c27890.graph_c1","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107938283 [Gossypium hirsutum]"]
["c40899.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Gossypium arboreum]"]
["c48710.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: threonine-tRNA ligase activity (GO:0004829);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: threonyl-tRNA aminoacylation (GO:0006435);; ","K01868|0|gra:105763117|K01868 threonyl-tRNA synthetase [EC:6.1.1.3] | (RefSeq) threonine--tRNA ligase, mitochondrial","[J]","Translation, ribosomal structure and biogenesis ","tRNA synthetase class II core domain (G, H, P, S and T);; Threonyl and Alanyl tRNA synthetase second additional domain;; TGS domain;; Anticodon binding domain","Threonine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=THRRS PE=1 SV=3","J","Translation, ribosomal structure and biogenesis","hypothetical protein B456_008G053600 [Gossypium raimondii]"]
["c52369.graph_c0","--","--","--","--","[M]","Cell wall/membrane/envelope biogenesis ","Lipocalin / cytosolic fatty-acid binding protein family;; Triabin","--","M","Cell wall/membrane/envelope biogenesis","--"]
["c50446.graph_c0","--","--","--","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","Tetratricopeptide TPR-1 [Corchorus olitorius]"]
["c35632.graph_c0","--","--","Cellular Component: Golgi membrane (GO:0000139);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: Golgi organization (GO:0007030);; Biological Process: protein secretion (GO:0009306);; Biological Process: unidimensional cell growth (GO:0009826);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Eukaryotic protein of unknown function (DUF846)","Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana OX=3702 GN=ECH PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Gossypium raimondii] "]
["c21693.graph_c1","[G]","Carbohydrate transport and metabolism ","Biological Process: polysaccharide catabolic process (GO:0000272);; Molecular Function: chitinase activity (GO:0004568);; Cellular Component: vacuole (GO:0005773);; Biological Process: chitin catabolic process (GO:0006032);; Biological Process: defense response (GO:0006952);; Molecular Function: chitin binding (GO:0008061);; Biological Process: cell wall macromolecule catabolic process (GO:0016998);; ","K20547|4.06348e-56|gra:105785965|K20547 basic endochitinase B [EC:3.2.1.14] | (RefSeq) endochitinase 2-like","[R]","General function prediction only ","Chitinase class I","Endochitinase 1 OS=Gossypium hirsutum OX=3635 PE=3 SV=1","G","Carbohydrate transport and metabolism","Endochitinase 1 [Gossypium arboreum]"]
["c44142.graph_c1","[R]","General function prediction only ","Biological Process: protein methylation (GO:0006479);; Molecular Function: methyltransferase activity (GO:0008168);; ","K11434|0|gra:105769948|K11434 type I protein arginine methyltransferase [EC:2.1.1.319] | (RefSeq) probable protein arginine N-methyltransferase 1.2","[OKT]","--","Methyltransferase domain;; Ribosomal protein L11 methyltransferase (PrmA);; Methyltransferase domain;; Methyltransferase domain;; Methyltransferase small domain;; Met-10+ like-protein","Probable protein arginine N-methyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PRMT1 PE=2 SV=1","S","Function unknown","PREDICTED: probable protein arginine N-methyltransferase 1.2 [Gossypium arboreum]"]
["c43385.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: hydrolase activity (GO:0016787);; ","K10896|0|gra:105782293|K10896 fanconi anemia group M protein | (RefSeq) ATP-dependent DNA helicase mph1","[R]","General function prediction only ","Type III restriction enzyme, res subunit;; DEAD/DEAH box helicase;; Helicase conserved C-terminal domain","DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1","L","Replication, recombination and repair","Fanconi anemia group M [Gossypium arboreum]"]
["c299.graph_c0","--","--","Cellular Component: intracellular part (GO:0044424);; ","--","[S]","Function unknown ","Armadillo/beta-catenin-like repeat","U-box domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=PUB9 PE=1 SV=1","S","Function unknown","U-box domain-containing protein 9-like [Durio zibethinus] "]
["c47702.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: trehalose-phosphatase activity (GO:0004805);; Biological Process: trehalose biosynthetic process (GO:0005992);; Biological Process: dephosphorylation (GO:0016311);; ","K01087|0|gra:105765463|K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12] | (RefSeq) probable trehalose-phosphate phosphatase D","[G]","Carbohydrate transport and metabolism ","Trehalose-phosphatase","Probable trehalose-phosphate phosphatase D OS=Arabidopsis thaliana OX=3702 GN=TPPD PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: probable trehalose-phosphate phosphatase D [Gossypium raimondii] "]
["c40369.graph_c0","[C]","Energy production and conversion ","Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity (GO:0004739);; Biological Process: acetyl-CoA biosynthetic process from pyruvate (GO:0006086);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00162|8.25837e-19|tcc:TCM_008458|K00162 pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] | (RefSeq) Transketolase family protein isoform 1","[C]","Energy production and conversion ","--","Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0536000 PE=2 SV=1","C","Energy production and conversion","hypothetical protein KK1_019650 [Cajanus cajan]"]
["c37050.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC110422959 [Herrania umbratica]"]
["c39289.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107944477 [Gossypium hirsutum]"]
["c53624.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c20929.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2","K","Transcription","PREDICTED: transcription factor MYC2 [Juglans regia]"]
["c29616.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","O-fucosyltransferase 9 OS=Arabidopsis thaliana OX=3702 GN=OFUT9 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein At1g04910 isoform X2 [Gossypium raimondii]"]
["c81154.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; ","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC18612672 [Theobroma cacao]"]
["c64768.graph_c0","--","--","--","--","--","--","--","21 kDa seed protein OS=Theobroma cacao OX=3641 GN=ASP PE=2 SV=1","--","--","PREDICTED: 21 kDa seed protein-like [Gossypium hirsutum]"]
["c38330.graph_c1","--","--","Cellular Component: intracellular (GO:0005622);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana OX=3702 GN=COL12 PE=1 SV=2","S","Function unknown","PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Gossypium hirsutum] "]
["c53793.graph_c0","--","--","Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435);; Molecular Function: signal transducer activity (GO:0004871);; Cellular Component: intracellular (GO:0005622);; Biological Process: lipid catabolic process (GO:0016042);; Biological Process: intracellular signal transduction (GO:0035556);; ","K05857|1.55289e-32|gra:105773437|K05857 phosphatidylinositol phospholipase C, delta [EC:3.1.4.11] | (RefSeq) phosphoinositide phospholipase C 2-like","[T]","Signal transduction mechanisms ","--","Phosphoinositide phospholipase C 7 OS=Arabidopsis thaliana OX=3702 GN=PLC7 PE=1 SV=1","S","Function unknown","hypothetical protein B456_010G197900 [Gossypium raimondii] "]
["c10906.graph_c0","[E]","Amino acid transport and metabolism ","--","--","--","--","NIL domain","--","--","--","--"]
["c87511.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c38149.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","--","T","Signal transduction mechanisms","PREDICTED: uncharacterized protein LOC107915715 [Gossypium hirsutum]"]
["c17281.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","Probable F-box protein At4g22030 OS=Arabidopsis thaliana OX=3702 GN=At4g22030 PE=4 SV=1","S","Function unknown","hypothetical protein B456_009G180100 [Gossypium raimondii]"]
["c45103.graph_c0","--","--","Molecular Function: core promoter sequence-specific DNA binding (GO:0001046);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription from RNA polymerase II promoter (GO:0006366);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1","S","Function unknown","PREDICTED: transcription factor bHLH112-like [Gossypium hirsutum]"]
["c6237.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: protein NYNRIN-like [Eucalyptus grandis]"]
["c43097.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; Biological Process: phosphatidylinositol dephosphorylation (GO:0046856);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Endonuclease/Exonuclease/phosphatase family","Type I inositol polyphosphate 5-phosphatase 10 OS=Arabidopsis thaliana OX=3702 GN=IP5P10 PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: type I inositol polyphosphate 5-phosphatase 10 [Gossypium arboreum] "]
["c4329.graph_c1","--","--","--","--","[R]","General function prediction only ","--","--","G","Carbohydrate transport and metabolism","--"]
["c50206.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107924142 [Gossypium hirsutum] "]
["c82286.graph_c0","--","--","--","--","[C]","Energy production and conversion ","Complex 1 protein (LYR family)","--","C","Energy production and conversion","--"]
["c1624.graph_c1","--","--","--","--","[T]","Signal transduction mechanisms ","--","--","S","Function unknown","--"]
["c34389.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein COLO4_09380 [Corchorus olitorius]"]
["c79289.graph_c0","[T]","Signal transduction mechanisms ","--","--","--","--","Serine aminopeptidase, S33","--","S","Function unknown","--"]
["c45441.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD31816 [Gossypium barbadense]"]
["c44641.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; ","K09506|0|tcc:TCM_014257|K09506 DnaJ homolog subfamily A member 5 | (RefSeq) DNAJ heat shock N-terminal domain-containing protein, putative","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ domain;; Zinc-finger double-stranded RNA-binding;; Zinc-finger of C2H2 type","DNAJ protein JJJ1 homolog OS=Arabidopsis thaliana OX=3702 GN=JJJ1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","DNAJ protein JJJ1 homolog [Herrania umbratica]"]
["c53806.graph_c0","--","--","Molecular Function: steryl-sulfatase activity (GO:0004773);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Fasciclin domain","Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana OX=3702 GN=FLA7 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein GOBAR_AA01368 [Gossypium barbadense]"]
["c28357.graph_c0","--","--","--","--","--","--","--","Uncharacterized protein At2g39910 OS=Arabidopsis thaliana OX=3702 GN=At2g39910 PE=2 SV=2","S","Function unknown","PREDICTED: uncharacterized protein At2g39910 [Gossypium arboreum] "]
["c40677.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[A]","RNA processing and modification ","--","Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana OX=3702 GN=RH33 PE=3 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107889629 [Gossypium hirsutum] "]
["c70977.graph_c0","--","--","--","--","[A]","RNA processing and modification ","--","--","S","Function unknown","PREDICTED: protein tipD [Gossypium arboreum] "]
["c56869.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Fusaric acid resistance protein-like","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108487760 [Gossypium arboreum]"]
["c48641.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: NAD+ kinase activity (GO:0003951);; Biological Process: NADP biosynthetic process (GO:0006741);; Biological Process: phosphorylation (GO:0016310);; Biological Process: NAD metabolic process (GO:0019674);; ","K00858|0|gra:105783019|K00858 NAD+ kinase [EC:2.7.1.23] | (RefSeq) NAD kinase 2, chloroplastic-like","[G]","Carbohydrate transport and metabolism ","ATP-NAD kinase","NAD kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NADK2 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: NAD kinase 2, chloroplastic-like isoform X2 [Gossypium hirsutum]"]
["c74101.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: glutaminase activity (GO:0004359);; Cellular Component: cytosol (GO:0005829);; Biological Process: pyridoxine metabolic process (GO:0008614);; Biological Process: vitamin B6 biosynthetic process (GO:0042819);; Biological Process: pyridoxal phosphate biosynthetic process (GO:0042823);; Cellular Component: glutaminase complex (GO:1903600);; ","K08681|2.25668e-06|jcu:105628108|K08681 5'-phosphate synthase pdxT subunit [EC:4.3.3.6] | (RefSeq) probable pyridoxal 5'-phosphate synthase subunit PDX2","--","--","SNO glutamine amidotransferase family","Probable pyridoxal 5&apos;-phosphate synthase subunit PDX2 OS=Arabidopsis thaliana OX=3702 GN=PDX2 PE=1 SV=1","H","Coenzyme transport and metabolism","pyridoxal 5&apos;-phosphate synthase, glutaminase subunit Pdx2 [Kwoniella mangroviensis CBS 10435]"]
["c15386.graph_c0","--","--","--","--","--","--","--","--","H","Coenzyme transport and metabolism","--"]
["c32161.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: rRNA export from nucleus (GO:0006407);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Cellular Component: small-subunit processome (GO:0032040);; Biological Process: positive regulation of translational fidelity (GO:0045903);; Molecular Function: small ribosomal subunit rRNA binding (GO:0070181);; ","K02981|2.85478e-121|ppp:PHYPADRAFT_196764|K02981 small subunit ribosomal protein S2e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S5, N-terminal domain;; Ribosomal protein S5, C-terminal domain","40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Physcomitrella patens] "]
["c34514.graph_c0","--","--","Molecular Function: ionotropic glutamate receptor activity (GO:0004970);; Biological Process: ion transport (GO:0006811);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ionotropic glutamate receptor signaling pathway (GO:0035235);; ","--","--","--","--","--","S","Function unknown","glutamate receptor 2.7-like isoform X1 [Herrania umbratica]"]
["c34904.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: protein tyrosine kinase activity (GO:0004713);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: peptidyl-tyrosine phosphorylation (GO:0018108);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana OX=3702 GN=At2g24130 PE=3 SV=1","S","Function unknown","PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Gossypium hirsutum]"]
["c72589.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108661996 [Theobroma cacao]"]
["c74774.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; ","--","[A]","RNA processing and modification ","--","--","L","Replication, recombination and repair","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c6864.graph_c0","--","--","--","--","[A]","RNA processing and modification ","NOPS (NUC059) domain","--","K","Transcription","--"]
["c85670.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: catalytic activity (GO:0003824);; ","K00665|1.28239e-10|csl:COCSUDRAFT_58179|K00665 fatty acid synthase, animal type [EC:2.3.1.85] | (RefSeq) hypothetical protein","[I]","Lipid transport and metabolism ","Zinc-binding dehydrogenase","--","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein COCSUDRAFT_58179 [Coccomyxa subellipsoidea C-169] "]
["c49346.graph_c0","[T]","Signal transduction mechanisms ","--","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; Lipopolysaccharide kinase (Kdo/WaaP) family","Mitogen-activated protein kinase 16 OS=Arabidopsis thaliana OX=3702 GN=MPK16 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Gossypium raimondii] "]
["c43823.graph_c0","--","--","--","--","--","--","--","Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=At1g19860 PE=1 SV=1","S","Function unknown","PREDICTED: zinc finger CCCH domain-containing protein 6-like [Gossypium hirsutum]"]
["c45293.graph_c0","--","--","--","--","[D]","Cell cycle control, cell division, chromosome partitioning ","Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase","Protein MICRORCHIDIA 2 OS=Arabidopsis thaliana OX=3702 GN=MORC2 PE=1 SV=1","S","Function unknown","PREDICTED: protein MICRORCHIDIA 2-like isoform X2 [Gossypium arboreum]"]
["c38307.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1005);; Protein of unknown function (DUF1005)","--","S","Function unknown","hypothetical protein COLO4_35365 [Corchorus olitorius]"]
["c34396.graph_c0","--","--","--","--","[R]","General function prediction only ","Retrotransposon gag protein","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107888630 [Gossypium hirsutum]"]
["c47058.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K14803|0|gra:105796932|K14803 protein phosphatase PTC2/3 [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 13","[T]","Signal transduction mechanisms ","Protein phosphatase 2C","Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana OX=3702 GN=At1g48040 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: probable protein phosphatase 2C 13 [Gossypium hirsutum]"]
["c39552.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107957399 [Gossypium hirsutum] "]
["c51506.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Receptor protein kinase-like protein ZAR1 OS=Arabidopsis thaliana OX=3702 GN=ZAR1 PE=1 SV=1","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Gossypium hirsutum]"]
["c89221.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2","V","Defense mechanisms","hypothetical protein GOBAR_AA26791 [Gossypium barbadense]"]
["c38399.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA29256 [Gossypium barbadense]"]
["c91771.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA27436 [Gossypium barbadense]"]
["c77772.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: calcium ion binding (GO:0005509);; ","K02183|5.64538e-49|crb:CARUB_v10024180mg|K02183 calmodulin | (RefSeq) hypothetical protein","[T]","Signal transduction mechanisms ","EF hand;; EF-hand domain pair;; EF-hand domain pair;; EF-hand domain;; EF hand","Calmodulin OS=Spinacia oleracea OX=3562 PE=1 SV=2","DTZ","--","hypothetical protein GOBAR_AA36251 [Gossypium barbadense]"]
["c49220.graph_c0","--","--","--","K13128|5.39865e-94|gra:105782557|K13128 zinc finger CCHC domain-containing protein 8 | (RefSeq) zinc finger CCHC domain-containing protein 8-like","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108463877 isoform X1 [Gossypium arboreum] "]
["c29036.graph_c0","--","--","Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: mediator complex (GO:0016592);; ","--","[K]","Transcription ","--","Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana OX=3702 GN=MED12 PE=1 SV=1","K","Transcription","hypothetical protein B456_007G099500 [Gossypium raimondii]"]
["c37628.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: positive regulation of seed germination (GO:0010030);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","--","[K]","Transcription ","Bromodomain;; Bromodomain extra-terminal - transcription regulation","Transcription factor GTE1 OS=Arabidopsis thaliana OX=3702 GN=GTE1 PE=2 SV=1","BK","--","hypothetical protein B456_008G052200 [Gossypium raimondii]"]
["c48348.graph_c0","--","--","Cellular Component: cell (GO:0005623);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03676|1.74212e-53|gra:105762307|K03676 glutaredoxin 3 | (RefSeq) monothiol glutaredoxin-S1","[O]","Posttranslational modification, protein turnover, chaperones ","Glutaredoxin","Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana OX=3702 GN=GRXS6 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: monothiol glutaredoxin-S1-like [Gossypium hirsutum] "]
["c32997.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|3.08537e-179|gra:105788729|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) protein NRT1/ PTR FAMILY 8.1-like","[E]","Amino acid transport and metabolism ","POT family","Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1","E","Amino acid transport and metabolism","hypothetical protein GOBAR_DD33638 [Gossypium barbadense]"]
["c73227.graph_c0","[GR]","Carbohydrate transport and metabolism ;; General function prediction only ","Biological Process: metabolic process (GO:0008152);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","Haloacid dehalogenase-like hydrolase;; HAD-hyrolase-like","Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 OS=Arabidopsis thaliana OX=3702 GN=At4g39970 PE=2 SV=1","S","Function unknown","HAD-like protein [Pyrenochaeta sp. DS3sAY3a]"]
["c38349.graph_c0","[X]","Mobilome: prophages, transposons","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; GAG-pre-integrase domain;; Integrase core domain","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_041406 [Vitis vinifera]"]
["c27706.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; ","K10875|2.10924e-13|gra:105773251|K10875 DNA repair and recombination protein RAD54 and RAD54-like protein [EC:3.6.4.-] | (RefSeq) SNF2 domain-containing protein CLASSY 1-like","[L]","Replication, recombination and repair ","--","SNF2 domain-containing protein CLASSY 2 OS=Arabidopsis thaliana OX=3702 GN=CLSY2 PE=1 SV=1","L","Replication, recombination and repair","SNF2 domain-containing protein CLASSY 1-like isoform X1 [Durio zibethinus]"]
["c86368.graph_c0","--","--","--","--","--","--","Brain specific membrane anchored protein","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c48845.graph_c1","--","--","Biological Process: ribosomal large subunit export from nucleus (GO:0000055);; Cellular Component: cell (GO:0005623);; Biological Process: actin cytoskeleton organization (GO:0030036);; Biological Process: ribosomal large subunit biogenesis (GO:0042273);; ","K14856|0|gra:105765657|K14856 protein SDA1 | (RefSeq) protein SDA1 homolog","[DZ]","--","SDA1;; NUC130/3NT domain","--","S","Function unknown","PREDICTED: protein SDA1 homolog [Gossypium hirsutum]"]
["c61795.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: dTDP-glucose 4,6-dehydratase activity (GO:0008460);; Biological Process: nucleotide-sugar metabolic process (GO:0009225);; ","K12450|7.96859e-42|tcc:TCM_032135|K12450 UDP-glucose 4,6-dehydratase [EC:4.2.1.76] | (RefSeq) Rhamnose biosynthesis 1","[G]","Carbohydrate transport and metabolism ","--","Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 OS=Arabidopsis thaliana OX=3702 GN=RHM1 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","hypothetical protein GOBAR_AA30935 [Gossypium barbadense]"]
["c41133.graph_c3","--","--","Molecular Function: sulfotransferase activity (GO:0008146);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18607906 [Theobroma cacao]"]
["c66073.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111301896 [Durio zibethinus]"]
["c73657.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Molecular Function: FK506 binding (GO:0005528);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: chaperone-mediated protein folding (GO:0061077);; ","K09571|2.28976e-44|egr:104414243|K09571 FK506-binding protein 4/5 [EC:5.2.1.8] | (RefSeq) peptidyl-prolyl cis-trans isomerase FKBP62","[O]","Posttranslational modification, protein turnover, chaperones ","FKBP-type peptidyl-prolyl cis-trans isomerase","70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62 isoform X1 [Eucalyptus grandis] "]
["c54918.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107950306 isoform X3 [Gossypium hirsutum]"]
["c34870.graph_c0","--","--","Cellular Component: cytoplasm (GO:0005737);; Molecular Function: pyrophosphatase activity (GO:0016462);; ","K01514|0|gra:105766779|K01514 exopolyphosphatase [EC:3.6.1.11] | (RefSeq) protein prune homolog","[C]","Energy production and conversion ","DHHA2 domain","--","C","Energy production and conversion","PREDICTED: protein prune homolog [Gossypium raimondii]"]
["c46036.graph_c0","[R]","General function prediction only ","Biological Process: cytokinin biosynthetic process (GO:0009691);; Molecular Function: hydrolase activity, hydrolyzing N-glycosyl compounds (GO:0016799);; ","K06966|4.88362e-91|gra:105773850|K06966 uncharacterized protein | (RefSeq) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like","--","--","Possible lysine decarboxylase;; Possible lysine decarboxylase","Cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana OX=3702 GN=LOG8 PE=1 SV=1","S","Function unknown","PREDICTED: cytokinin riboside 5&apos;-monophosphate phosphoribohydrolase LOG8-like isoform X2 [Gossypium raimondii]"]
["c75399.graph_c0","--","--","--","--","[I]","Lipid transport and metabolism ","Lipocalin / cytosolic fatty-acid binding protein family;; Lipocalin / cytosolic fatty-acid binding protein family","--","I","Lipid transport and metabolism","fatty acid-binding protein FABP [Pochonia chlamydosporia 170] "]
["c29629.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","--","Growth-regulating factor 1 OS=Arabidopsis thaliana OX=3702 GN=GRF1 PE=1 SV=1","K","Transcription","growth-regulating factor 1-like [Durio zibethinus]"]
["c32237.graph_c0","--","--","Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);; Biological Process: regulation of ARF protein signal transduction (GO:0032012);; Biological Process: positive regulation of GTPase activity (GO:0043547);; ","K18442|2.47843e-45|gra:105802600|K18442 brefeldin A-inhibited guanine nucleotide-exchange protein | (RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 2-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana OX=3702 GN=BIG3 PE=1 SV=1","S","Function unknown","brefeldin A-inhibited guanine nucleotide-exchange protein 2-like isoform X4 [Durio zibethinus]"]
["c81630.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: sulfate assimilation (GO:0000103);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein folding (GO:0006457);; Biological Process: glycerol ether metabolic process (GO:0006662);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor (GO:0016671);; Biological Process: cellular response to oxidative stress (GO:0034599);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03671|1.05213e-43|fve:101290855|K03671 thioredoxin 1 | (RefSeq) thioredoxin H2-like","[O]","Posttranslational modification, protein turnover, chaperones ","Thioredoxin;; Thioredoxin-like;; AhpC/TSA family","Thioredoxin H2 OS=Arabidopsis thaliana OX=3702 GN=TRX2 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: thioredoxin H2-like [Fragaria vesca subsp. vesca]"]
["c66374.graph_c0","--","--","Biological Process: dephosphorylation (GO:0016311);; Molecular Function: phosphatase activity (GO:0016791);; ","--","[T]","Signal transduction mechanisms ","--","--","T","Signal transduction mechanisms","protein tyrosine phosphatase type iva protein 1 [Nannochloropsis gaditana CCMP526] "]
["c87972.graph_c0","[C]","Energy production and conversion ","Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: heme binding (GO:0020037);; ","K00413|1.78572e-27|cmo:103491848|K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit | (RefSeq) cytochrome c1-2, heme protein, mitochondrial","[C]","Energy production and conversion ","Cytochrome C1 family","Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum OX=4113 GN=CYCL PE=2 SV=1","C","Energy production and conversion","hypothetical protein AQUCO_01700347v1 [Aquilegia coerulea]"]
["c6160.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: defense response (GO:0006952);; Biological Process: signal transduction (GO:0007165);; Biological Process: DNA integration (GO:0015074);; Molecular Function: ADP binding (GO:0043531);; ","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","uncharacterized protein LOC110661163 [Hevea brasiliensis]"]
["c24865.graph_c0","[IR]","Lipid transport and metabolism ;; General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: lipase activity (GO:0016298);; Molecular Function: 9,9'-dicis-carotene:quinone oxidoreductase activity (GO:0052886);; Molecular Function: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity (GO:0052887);; Biological Process: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene (GO:0052889);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana OX=3702 GN=EXL3 PE=2 SV=1","S","Function unknown","GDSL esterase/lipase EXL3-like [Durio zibethinus]"]
["c17148.graph_c0","[S]","Function unknown ","--","--","[S]","Function unknown ","Cysteine-rich secretory protein family","Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1","S","Function unknown","PREDICTED: pathogenesis-related leaf protein 6-like [Theobroma cacao]"]
["c70683.graph_c0","--","--","--","K09422|9.43689e-40|gra:105770544|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor MYB75-like","[K]","Transcription ","Myb-like DNA-binding domain","Transcription factor MYB113 OS=Arabidopsis thaliana OX=3702 GN=MYB113 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor MYB114-like [Gossypium hirsutum]"]
["c40613.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; RING-like zinc finger;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger);; Anaphase-promoting complex subunit 11 RING-H2 finger;; FANCL C-terminal domain","RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: RING-H2 finger protein ATL73-like [Gossypium raimondii] "]
["c17859.graph_c0","--","--","Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K12823|5.00954e-18|gra:105779642|K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 46-like","--","--","--","--","--","--","PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform X1 [Gossypium raimondii] "]
["c62840.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_019807 [Theobroma cacao]"]
["c43652.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: racemase and epimerase activity, acting on carbohydrates and derivatives (GO:0016857);; Molecular Function: coenzyme binding (GO:0050662);; ","K08679|1.42289e-85|tcc:TCM_005530|K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6] | (RefSeq) UDP-D-glucuronate 4-epimerase 3","[M]","Cell wall/membrane/envelope biogenesis ","NAD dependent epimerase/dehydratase family;; GDP-mannose 4,6 dehydratase;; Pollen proteins Ole e I like","UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana OX=3702 GN=GAE2 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: UDP-glucuronate 4-epimerase 3 [Gossypium arboreum]"]
["c86994.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c79390.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana OX=3702 GN=WBC30 PE=1 SV=3","V","Defense mechanisms","Putative white-brown complex 30 -like protein [Gossypium arboreum]"]
["c26810.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: poly(A)+ mRNA export from nucleus (GO:0016973);; Cellular Component: nuclear pore outer ring (GO:0031080);; Cellular Component: nuclear membrane (GO:0031965);; Cellular Component: nuclear periphery (GO:0034399);; ","--","--","--","--","--","S","Function unknown","predicted protein [Leptosphaeria maculans JN3] "]
["c41825.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","Protein of unknown function (DUF3755)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107914640 [Gossypium hirsutum]"]
["c36768.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: calcium ion binding (GO:0005509);; ","K13448|2.201e-82|gra:105794080|K13448 calcium-binding protein CML | (RefSeq) probable calcium-binding protein CML27","[T]","Signal transduction mechanisms ","EF hand;; EF-hand domain pair;; EF-hand domain;; EF hand;; EF-hand domain pair;; EF-hand domain;; Secreted protein acidic and rich in cysteine Ca binding region;; Cytoskeletal-regulatory complex EF hand","Probable calcium-binding protein CML27 OS=Arabidopsis thaliana OX=3702 GN=CML27 PE=1 SV=1","DTZ","--","PREDICTED: probable calcium-binding protein CML27 [Gossypium hirsutum]"]
["c56114.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: pollen development (GO:0009555);; Biological Process: wax biosynthetic process (GO:0010025);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; Biological Process: very long-chain fatty acid biosynthetic process (GO:0042761);; ","--","--","--","--","--","--","--","protein ECERIFERUM 2 [Herrania umbratica]"]
["c21628.graph_c0","--","--","--","--","--","--","MNLL subunit","--","C","Energy production and conversion","--"]
["c38061.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: histidine biosynthetic process (GO:0000105);; Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: ATP phosphoribosyltransferase activity (GO:0003879);; Cellular Component: cytoplasm (GO:0005737);; ","K00765|4.31998e-70|gra:105763028|K00765 ATP phosphoribosyltransferase [EC:2.4.2.17] | (RefSeq) ATP phosphoribosyltransferase 2, chloroplastic-like","[E]","Amino acid transport and metabolism ","--","ATP phosphoribosyltransferase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HISN1B PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Gossypium hirsutum] "]
["c21253.graph_c0","--","--","--","--","--","--","--","--","--","--","basic pentacysteine7 -like protein [Gossypium arboreum]"]
["c49577.graph_c0","--","--","--","K12400|0|gra:105764925|K12400 AP-4 complex subunit epsilon-1 | (RefSeq) AP-4 complex subunit epsilon-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Adaptin N terminal region;; non-SMC mitotic condensation complex subunit 1;; HEAT repeats;; HEAT repeat","AP-4 complex subunit epsilon OS=Arabidopsis thaliana OX=3702 GN=At1g31730 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: AP-4 complex subunit epsilon-like [Gossypium raimondii] "]
["c23183.graph_c0","--","--","--","K19983|1.46857e-18|tcc:TCM_033967|K19983 exocyst complex component 1 | (RefSeq) Exocyst complex component sec3A isoform 1","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Exocyst complex component SEC3B OS=Arabidopsis thaliana OX=3702 GN=SEC3B PE=2 SV=1","S","Function unknown","Exocyst complex, component Exoc1 [Corchorus capsularis]"]
["c36987.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","Enoyl-(Acyl carrier protein) reductase;; short chain dehydrogenase;; KR domain","Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia OX=55183 PE=1 SV=1","S","Function unknown","PREDICTED: secoisolariciresinol dehydrogenase-like [Gossypium arboreum]"]
["c86092.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c44146.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; ","K14811|0|gra:105789395|K14811 ATP-dependent RNA helicase DBP3 [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 5","[A]","RNA processing and modification ","DEAD/DEAH box helicase;; Helicase conserved C-terminal domain","DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X1 [Gossypium raimondii] "]
["c86501.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K04733|5.87802e-52|tcc:TCM_037406|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) Root-specific kinase 1","[T]","Signal transduction mechanisms ","--","Serine/threonine-protein kinase RIPK OS=Arabidopsis thaliana OX=3702 GN=RIPK PE=1 SV=1","T","Signal transduction mechanisms","probable serine/threonine-protein kinase PBL12 [Herrania umbratica]"]
["c25339.graph_c1","--","--","--","K06693|2.41511e-11|tcc:TCM_037055|K06693 26S proteasome non-ATPase regulatory subunit 9 | (RefSeq) 26S proteasome regulatory subunit, putative isoform 1","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","26S proteasome non-ATPase regulatory subunit 9-like isoform X1 [Durio zibethinus]"]
["c37124.graph_c2","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107793286 [Nicotiana tabacum]"]
["c80524.graph_c0","--","--","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: heme binding (GO:0020037);; Molecular Function: flavonoid 3',5'-hydroxylase activity (GO:0033772);; Biological Process: secondary metabolite biosynthetic process (GO:0044550);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Cytochrome P450 78A6 OS=Arabidopsis thaliana OX=3702 GN=CYP78A6 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","cytochrome P450 78A5-like [Durio zibethinus]"]
["c71441.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|1.19184e-36|gra:105767570|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor RAX2-like","--","--","--","--","K","Transcription","PREDICTED: transcription factor RAX2-like [Gossypium arboreum]"]
["c47349.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","--","--","[R]","General function prediction only ","alpha/beta hydrolase fold;; Alpha/beta hydrolase family;; Serine aminopeptidase, S33","Zinc finger protein WIP2 OS=Arabidopsis thaliana OX=3702 GN=WIP2 PE=1 SV=1","S","Function unknown","zinc finger protein WIP2-like [Durio zibethinus]"]
["c33407.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: mucin-2-like [Gossypium hirsutum] "]
["c26433.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: lyase activity (GO:0016829);; ","--","--","--","Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily","--","S","Function unknown","uncharacterized protein LOC110411141 [Herrania umbratica]"]
["c36518.graph_c0","--","--","Biological Process: response to auxin (GO:0009733);; ","K14488|3.98417e-73|tcc:TCM_006758|K14488 SAUR family protein | (RefSeq) F10A5.20, putative","--","--","Auxin responsive protein","Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA04580 [Gossypium barbadense]"]
["c17641.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","--","--","--","APO RNA-binding","APO protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO4 PE=2 SV=2","S","Function unknown","hypothetical protein GOBAR_AA05707 [Gossypium barbadense]"]
["c60133.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Psoralen synthase OS=Ammi majus OX=48026 GN=CYP71AJ1 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein GOBAR_DD31819 [Gossypium barbadense]"]
["c92810.graph_c0","--","--","--","--","[H]","Coenzyme transport and metabolism ","--","--","H","Coenzyme transport and metabolism","--"]
["c45136.graph_c3","--","--","Cellular Component: endoplasmic reticulum lumen (GO:0005788);; Biological Process: response to heat (GO:0009408);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: pollen tube growth (GO:0009860);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","DnaJ protein ERDJ3A OS=Arabidopsis thaliana OX=3702 GN=ERDJ3A PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD05411 [Gossypium barbadense]"]
["c29140.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD27748 [Gossypium barbadense]"]
["c20845.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: glycogen (starch) synthase activity (GO:0004373);; Cellular Component: amyloplast (GO:0009501);; Cellular Component: chloroplast (GO:0009507);; Biological Process: starch biosynthetic process (GO:0019252);; ","K13679|1.87858e-105|gra:105765362|K13679 granule-bound starch synthase [EC:2.4.1.242] | (RefSeq) granule-bound starch synthase 1, chloroplastic/amyloplastic-like","--","--","Starch synthase catalytic domain","Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus OX=4151 GN=WAXY PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD05810 [Gossypium barbadense]"]
["c17808.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[R]","General function prediction only ","--","Serine/threonine-protein kinase KIPK2 OS=Arabidopsis thaliana OX=3702 GN=KIPK2 PE=1 SV=1","T","Signal transduction mechanisms","Serine/threonine-protein kinase KIPK [Gossypium arboreum]"]
["c8639.graph_c0","--","--","--","K14677|9.62587e-06|gra:105782851|K14677 aminoacylase [EC:3.5.1.14] | (RefSeq) aminoacylase-1-like","--","--","--","--","--","--","--"]
["c28570.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_004G246700 [Gossypium raimondii]"]
["c75235.graph_c0","--","--","Molecular Function: SNARE binding (GO:0000149);; Molecular Function: SNAP receptor activity (GO:0005484);; Biological Process: exocytosis (GO:0006887);; Biological Process: vesicle fusion (GO:0006906);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: SNARE complex (GO:0031201);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Regulated-SNARE-like domain","Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana OX=3702 GN=VAMP726 PE=2 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","vesicle-associated membrane protein 721 [Prunus persica] "]
["c21886.graph_c0","--","--","Molecular Function: purine ribonucleoside binding (GO:0032550);; Molecular Function: adenyl ribonucleotide binding (GO:0032559);; Molecular Function: anion binding (GO:0043168);; ","--","--","--","--","--","--","--","Cc-nbs-lrr resistance protein, putative [Theobroma cacao]"]
["c58608.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Cellular Component: intracellular (GO:0005622);; ","K02966|3.87573e-53|mus:103997366|K02966 small subunit ribosomal protein S19e | (RefSeq) 40S ribosomal protein S19-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S19e","40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S19-like [Musa acuminata subsp. malaccensis]"]
["c75150.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 71D10 OS=Glycine max OX=3847 GN=CYP71D10 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein B456_002G098100 [Gossypium raimondii]"]
["c39042.graph_c0","--","--","Biological Process: guanosine tetraphosphate metabolic process (GO:0015969);; ","--","--","--","--","Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RSH1 PE=1 SV=1","--","--","relA [Gossypium arboreum]"]
["c23879.graph_c2","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein BD324DRAFT_607087 [Kockovaella imperatae] "]
["c9478.graph_c0","--","--","--","K09489|2.60935e-10|tcc:TCM_028691|K09489 heat shock 70kDa protein 4 | (RefSeq) Heat shock protein 91 isoform 1","[O]","Posttranslational modification, protein turnover, chaperones ","--","Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana OX=3702 GN=HSP70-15 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","heat shock 70 kDa protein 14 [Herrania umbratica] "]
["c22029.graph_c0","--","--","--","--","--","--","Differentiation and proliferation regulator","--","S","Function unknown","--"]
["c94170.graph_c0","--","--","--","--","[S]","Function unknown ","--","--","DZ","--","--"]
["c43797.graph_c1","--","--","--","--","--","--","--","--","--","--","hypothetical protein MANES_06G059200 [Manihot esculenta]"]
["c26160.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14486|4.40224e-30|tcc:TCM_037484|K14486 auxin response factor | (RefSeq) Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1","--","--","--","Auxin response factor 7 OS=Arabidopsis thaliana OX=3702 GN=ARF7 PE=1 SV=2","K","Transcription","PREDICTED: auxin response factor 7-like isoform X3 [Gossypium hirsutum]"]
["c49279.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA25002 [Gossypium barbadense]"]
["c19436.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","--","--","S","Function unknown","hypothetical protein B456_012G160300 [Gossypium raimondii]"]
["c14374.graph_c0","--","--","Biological Process: phospholipid biosynthetic process (GO:0008654);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: phosphotransferase activity, for other substituted phosphate groups (GO:0016780);; ","K00993|1.31851e-26|gra:105784082|K00993 ethanolaminephosphotransferase [EC:2.7.8.1] | (RefSeq) choline/ethanolaminephosphotransferase 1-like","[I]","Lipid transport and metabolism ","--","Choline/ethanolaminephosphotransferase 2 OS=Arabidopsis thaliana OX=3702 GN=AAPT2 PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein GOBAR_AA25858 [Gossypium barbadense]"]
["c40145.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Biological Process: response to biotic stimulus (GO:0009607);; ","--","--","--","Pathogenesis-related protein Bet v I family","Major allergen Pru ar 1 OS=Prunus armeniaca OX=36596 PE=1 SV=1","S","Function unknown","PREDICTED: major allergen Pru ar 1-like [Gossypium hirsutum]"]
["c52226.graph_c0","--","--","Molecular Function: cellulase activity (GO:0008810);; Biological Process: cellulose catabolic process (GO:0030245);; ","--","--","--","Glycosyl hydrolase family 9","Endoglucanase 8 OS=Arabidopsis thaliana OX=3702 GN=CEL1 PE=2 SV=1","G","Carbohydrate transport and metabolism","Glycoside hydrolase [Trema orientalis]"]
["c22803.graph_c1","--","--","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: lyase activity (GO:0016829);; Molecular Function: galacturan 1,4-alpha-galacturonidase activity (GO:0047911);; Biological Process: cell wall organization (GO:0071555);; ","--","--","--","Glycosyl hydrolases family 28","Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","polygalacturonase-like [Durio zibethinus]"]
["c26378.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: cellular process (GO:0009987);; Molecular Function: isomerase activity (GO:0016853);; ","K03768|3.38777e-32|mis:MICPUN_84244|K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] | (RefSeq) CYP-B; peptidylprolyl isomerase, precursor","[O]","Posttranslational modification, protein turnover, chaperones ","Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD","Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana OX=3702 GN=CYP19-4 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","peptidylprolyl isomerase, precursor [Micromonas commoda] "]
["c51569.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2","K","Transcription","hypothetical protein GOBAR_DD21499 [Gossypium barbadense]"]
["c40033.graph_c0","[R]","General function prediction only ","--","--","[S]","Function unknown ","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain;; WD domain, G-beta repeat","COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana OX=3702 GN=WDR5B PE=1 SV=1","S","Function unknown","PREDICTED: WD repeat-containing protein 44-like [Gossypium arboreum] "]
["c44781.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Molecular Function: 2-alkenal reductase [NAD(P)] activity (GO:0032440);; Biological Process: glucose import (GO:0046323);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","[R]","General function prediction only ","Sugar (and other) transporter;; Major Facilitator Superfamily","Polyol transporter 5 OS=Arabidopsis thaliana OX=3702 GN=PLT5 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: polyol transporter 5 [Gossypium arboreum]"]
["c62290.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC106339671 [Brassica oleracea var. oleracea]"]
["c33480.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","SPX domain;; EXS family","Phosphate transporter PHO1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=PHO1;H3 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein B456_005G142500 [Gossypium raimondii]"]
["c53827.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|0|gra:105778111|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) cationic peroxidase 1-like","--","--","Peroxidase","Cationic peroxidase 1 OS=Arachis hypogaea OX=3818 GN=PNC1 PE=1 SV=2","G","Carbohydrate transport and metabolism","PREDICTED: cationic peroxidase 1-like [Gossypium raimondii] "]
["c51124.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Gossypium hirsutum]"]
["c84215.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","--","Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: receptor-like protein kinase FERONIA [Gossypium arboreum]"]
["c25800.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: polygalacturonase activity (GO:0004650);; Cellular Component: extracellular region (GO:0005576);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: lyase activity (GO:0016829);; Biological Process: cell wall organization (GO:0071555);; ","--","--","--","Glycosyl hydrolases family 28","Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2","M","Cell wall/membrane/envelope biogenesis","hypothetical protein GOBAR_DD06002 [Gossypium barbadense]"]
["c74559.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC101302488 [Fragaria vesca subsp. vesca]"]
["c26676.graph_c0","--","--","Cellular Component: photosystem I reaction center (GO:0009538);; Biological Process: photosynthesis (GO:0015979);; Cellular Component: integral component of membrane (GO:0016021);; ","K02694|6.94962e-40|mtr:MTR_2g029370|K02694 photosystem I subunit III | (RefSeq) photosystem I reaction center subunit III","--","--","Photosystem I reaction centre subunit III","Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAF PE=1 SV=1","S","Function unknown","unknown, partial [Medicago truncatula]"]
["c37303.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ domain","NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhT PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA03117 [Gossypium barbadense]"]
["c27154.graph_c0","--","--","--","--","[R]","General function prediction only ","Hyaluronan / mRNA binding family","--","S","Function unknown","--"]
["c55523.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; ","--","--","--","Plant protein of unknown function (DUF936)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107907236 [Gossypium hirsutum]"]
["c33290.graph_c0","[C]","Energy production and conversion ","Cellular Component: chromoplast (GO:0009509);; Biological Process: carotenoid biosynthetic process (GO:0016117);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: capsanthin synthase activity (GO:0052727);; Molecular Function: capsorubin synthase activity (GO:0052728);; Biological Process: oxidation-reduction process (GO:0055114);; ","K14593|0|gra:105799234|K14593 capsanthin/capsorubin synthase [EC:5.3.99.8] | (RefSeq) capsanthin/capsorubin synthase, chromoplast-like","--","--","Lycopene cyclase protein;; Pyridine nucleotide-disulphide oxidoreductase","Capsanthin/capsorubin synthase, chromoplastic OS=Citrus sinensis OX=2711 GN=CCS PE=3 SV=1","I","Lipid transport and metabolism","PREDICTED: capsanthin/capsorubin synthase, chromoplast-like isoform X1 [Gossypium raimondii] "]
["c74319.graph_c0","--","--","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","--","--","--","--","GDSL esterase/lipase 7 OS=Arabidopsis thaliana OX=3702 GN=GLIP7 PE=2 SV=1","S","Function unknown","PREDICTED: GDSL esterase/lipase At4g16230-like [Gossypium arboreum]"]
["c5206.graph_c0","--","--","--","--","--","--","Rapid ALkalinization Factor (RALF)","--","--","--","hypothetical protein CCACVL1_01985 [Corchorus capsularis]"]
["c43399.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","No apical meristem (NAM) protein","NAC domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=NAC045 PE=2 SV=1","--","--","NAC domain-containing protein 45-like [Durio zibethinus]"]
["c90368.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c16383.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107953292 [Gossypium hirsutum] "]
["c45245.graph_c0","[H]","Coenzyme transport and metabolism ","Biological Process: cellular protein modification process (GO:0006464);; Molecular Function: small protein activating enzyme activity (GO:0008641);; ","K10684|2.05955e-87|gra:105764798|K10684 ubiquitin-like 1-activating enzyme E1 A [EC:6.2.1.45] | (RefSeq) SUMO-activating enzyme subunit 1B-1-like","[O]","Posttranslational modification, protein turnover, chaperones ","ThiF family","SUMO-activating enzyme subunit 1A OS=Arabidopsis thaliana OX=3702 GN=SAE1A PE=1 SV=1","H","Coenzyme transport and metabolism","PREDICTED: SUMO-activating enzyme subunit 1B-1-like [Gossypium raimondii] "]
["c92073.graph_c0","[T]","Signal transduction mechanisms ","Biological Process: DNA replication checkpoint (GO:0000076);; Cellular Component: protein phosphatase type 1 complex (GO:0000164);; Cellular Component: condensed nuclear chromosome kinetochore (GO:0000778);; Cellular Component: nuclear chromatin (GO:0000790);; Biological Process: regulation of cell shape during vegetative growth phase (GO:0000903);; Cellular Component: mating projection base (GO:0001400);; Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: spindle pole body (GO:0005816);; Cellular Component: cytosol (GO:0005829);; Cellular Component: mRNA cleavage and polyadenylation specificity factor complex (GO:0005847);; Cellular Component: cellular bud neck (GO:0005935);; Cellular Component: cell cortex (GO:0005938);; Biological Process: glycogen metabolic process (GO:0005977);; Biological Process: regulation of carbohydrate metabolic process (GO:0006109);; Biological Process: rRNA processing (GO:0006364);; Biological Process: cellular ion homeostasis (GO:0006873);; Biological Process: mitotic spindle assembly checkpoint (GO:0007094);; Biological Process: cell budding (GO:0007114);; Biological Process: meiotic cell cycle (GO:0007126);; Biological Process: response to heat (GO:0009408);; Biological Process: histone dephosphorylation (GO:0016576);; Cellular Component: endocytic vesicle (GO:0030139);; Biological Process: ascospore formation (GO:0030437);; Biological Process: termination of RNA polymerase II transcription, poly(A)-coupled (GO:0030846);; Biological Process: termination of RNA polymerase II transcription, exosome-dependent (GO:0030847);; Biological Process: replication fork processing (GO:0031297);; Cellular Component: cell division site (GO:0032153);; Biological Process: protein localization to kinetochore (GO:0034501);; Biological Process: positive regulation of protein dephosphorylation (GO:0035307);; Cellular Component: growing cell tip (GO:0035838);; Cellular Component: non-growing cell tip (GO:0035839);; Biological Process: mitotic DNA damage checkpoint (GO:0044773);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: attachment of mitotic spindle microtubules to kinetochore (GO:0051315);; Biological Process: transfer RNA gene-mediated silencing (GO:0061587);; Cellular Component: CENP-A containing chromatin (GO:0061638);; Biological Process: dephosphorylation of RNA polymerase II C-terminal domain (GO:0070940);; Cellular Component: PTW/PP1 phosphatase complex (GO:0072357);; Biological Process: negative regulation of chromosome condensation (GO:1902340);; Cellular Component: DPS complex (GO:1990567);; ","K06269|8.11752e-53|pxb:103939751|K06269 serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] | (RefSeq) serine/threonine-protein phosphatase PP1","[TR]","--","--","Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia peniculus OX=35862 PE=3 SV=1","T","Signal transduction mechanisms","Glc7p [Rhizophagus irregularis DAOM 197198w] "]
["c50663.graph_c0","--","--","--","--","--","--","--","--","--","--","sulfite exporter TauE/SafE family protein 5-like [Durio zibethinus]"]
["c31362.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K04733|2.53767e-125|gra:105796223|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) probable inactive receptor kinase RLK902","--","--","Protein kinase domain;; Protein tyrosine kinase","Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana OX=3702 GN=At5g58300 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: pollen receptor-like kinase 5 [Gossypium arboreum]"]
["c83393.graph_c0","[G]","Carbohydrate transport and metabolism ","--","--","--","--","Xylose isomerase-like TIM barrel","--","--","--","--"]
["c39020.graph_c0","[S]","Function unknown ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity (GO:0016308);; Biological Process: phosphatidylinositol phosphorylation (GO:0046854);; ","K00889|5.85774e-65|gra:105795477|K00889 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68] | (RefSeq) phosphatidylinositol 4-phosphate 5-kinase 8-like","[T]","Signal transduction mechanisms ","MORN repeat","Phosphatidylinositol 4-phosphate 5-kinase 8 OS=Arabidopsis thaliana OX=3702 GN=PIP5K8 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like [Gossypium hirsutum]"]
["c48038.graph_c0","[L]","Replication, recombination and repair ","Biological Process: DNA strand renaturation (GO:0000733);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA recombination (GO:0006310);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; Molecular Function: four-way junction helicase activity (GO:0009378);; Biological Process: DNA duplex unwinding (GO:0032508);; Molecular Function: annealing helicase activity (GO:0036310);; Molecular Function: 3'-5' DNA helicase activity (GO:0043138);; ","K10901|3.74243e-180|gra:105803663|K10901 bloom syndrome protein [EC:3.6.4.12] | (RefSeq) ATP-dependent DNA helicase Q-like 3","[L]","Replication, recombination and repair ","RecQ zinc-binding;; DEAD/DEAH box helicase;; DEAD/DEAH box helicase","ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1","L","Replication, recombination and repair","PREDICTED: ATP-dependent DNA helicase Q-like 3 [Gossypium arboreum]"]
["c41394.graph_c0","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: NAD(P)H dehydrogenase complex (plastoquinone) (GO:0010598);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1","S","Function unknown","photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Durio zibethinus]"]
["c7726.graph_c0","--","--","--","--","--","--","--","--","K","Transcription","uncharacterized protein LOC110409458 [Herrania umbratica]"]
["c54491.graph_c0","--","--","Molecular Function: protein-lysine N-methyltransferase activity (GO:0016279);; Biological Process: peptidyl-lysine monomethylation (GO:0018026);; ","K05302|1.40682e-31|gra:105779724|K05302 N-lysine methyltransferase SETD6 [EC:2.1.1.-] | (RefSeq) ribosomal lysine N-methyltransferase 3","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: ribosomal lysine N-methyltransferase 3 isoform X1 [Gossypium arboreum] "]
["c91665.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c40496.graph_c2","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2","S","Function unknown","60S ribosomal protein L18a-like protein [Herrania umbratica]"]
["c68144.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD04320 [Gossypium barbadense]"]
["c45426.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105769023 isoform X1 [Gossypium raimondii] "]
["c52565.graph_c0","--","--","Molecular Function: phosphatidylinositol phosphate kinase activity (GO:0016307);; Biological Process: phosphatidylinositol phosphorylation (GO:0046854);; ","K00889|1.55555e-25|tcc:TCM_035031|K00889 1-phosphatidylinositol-4-phosphate 5-kinase [EC:2.7.1.68] | (RefSeq) Phosphatidylinositol-4-phosphate 5-kinase 1","[T]","Signal transduction mechanisms ","MORN repeat","Phosphatidylinositol 4-phosphate 5-kinase 2 OS=Arabidopsis thaliana OX=3702 GN=PIP5K2 PE=1 SV=2","T","Signal transduction mechanisms","phosphatidylinositol 4-phosphate 5-kinase 1-like [Durio zibethinus]"]
["c15672.graph_c0","[CR]","Energy production and conversion ;; General function prediction only ","Cellular Component: cytosol (GO:0005829);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00344|0|tcc:TCM_014882|K00344 NADPH2:quinone reductase [EC:1.6.5.5] | (RefSeq) GroES-like zinc-binding alcohol dehydrogenase family protein","[CR]","--","Zinc-binding dehydrogenase;; Zinc-binding dehydrogenase;; Alcohol dehydrogenase GroES-like domain","--","C","Energy production and conversion","GroES-like zinc-binding alcohol dehydrogenase family protein [Theobroma cacao]"]
["c84244.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: intracellular non-membrane-bounded organelle (GO:0043232);; Cellular Component: intracellular organelle part (GO:0044446);; ","K14537|7.98941e-12|egu:105036988|K14537 nuclear GTP-binding protein | (RefSeq) nuclear/nucleolar GTPase 2-like","[R]","General function prediction only ","NGP1NT (NUC091) domain","Nuclear/nucleolar GTPase 2 OS=Oryza sativa subsp. indica OX=39946 GN=NUG2 PE=3 SV=1","S","Function unknown","hypothetical protein SPPG_03136 [Spizellomyces punctatus DAOM BR117] "]
["c34449.graph_c0","--","--","--","--","--","--","C1 domain","--","--","--","PREDICTED: uncharacterized protein LOC107889573 [Gossypium hirsutum]"]
["c58895.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: glutathione transferase activity (GO:0004364);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: glutathione metabolic process (GO:0006749);; Biological Process: toxin catabolic process (GO:0009407);; Molecular Function: lyase activity (GO:0016829);; ","K00799|1.2426e-78|tcc:TCM_025576|K00799 glutathione S-transferase [EC:2.5.1.18] | (RefSeq) Glutathione S-transferase tau 7","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain","Glutathione S-transferase U3 OS=Arabidopsis thaliana OX=3702 GN=GSTU3 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: probable glutathione S-transferase [Theobroma cacao]"]
["c4906.graph_c1","--","--","--","--","--","--","--","--","--","--","zinc finger protein ZAT10-like [Durio zibethinus]"]
["c54051.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_005G214600 [Gossypium raimondii]"]
["c50706.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Biological Process: RNA modification (GO:0009451);; Cellular Component: chloroplast (GO:0009507);; ","--","[R]","General function prediction only ","PPR repeat;; DYW family of nucleic acid deaminases;; PPR repeat family;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Gossypium raimondii] "]
["c61845.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105772410 [Gossypium raimondii] "]
["c40177.graph_c0","--","--","--","K11644|1.29673e-42|gra:105798283|K11644 paired amphipathic helix protein Sin3a | (RefSeq) paired amphipathic helix protein Sin3-like 2","[B]","Chromatin structure and dynamics ","Paired amphipathic helix repeat","Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=SNL1 PE=1 SV=2","B","Chromatin structure and dynamics","PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X3 [Gossypium hirsutum]"]
["c31714.graph_c1","[M]","Cell wall/membrane/envelope biogenesis ","Biological Process: glycolipid biosynthetic process (GO:0009247);; Molecular Function: transferase activity, transferring hexosyl groups (GO:0016758);; ","K03715|1.58024e-38|gra:105770833|K03715 1,2-diacylglycerol 3-beta-galactosyltransferase [EC:2.4.1.46] | (RefSeq) monogalactosyldiacylglycerol synthase 2, chloroplastic","--","--","--","Monogalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MGD2 PE=1 SV=1","M","Cell wall/membrane/envelope biogenesis","1,2-diacylglycerol 3-beta-galactosyltransferase, partial [Camellia sinensis]"]
["c22212.graph_c0","--","--","--","--","--","--","Wound-induced protein","--","S","Function unknown","hypothetical protein GOBAR_DD26328 [Gossypium barbadense] "]
["c93192.graph_c0","--","--","--","--","[R]","General function prediction only ","Homeobox domain","--","S","Function unknown","--"]
["c46907.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter;; ABC-2 family transporter protein","ABC transporter G family member 25 OS=Arabidopsis thaliana OX=3702 GN=ABCG25 PE=2 SV=1","V","Defense mechanisms","hypothetical protein GOBAR_AA36847 [Gossypium barbadense]"]
["c32847.graph_c0","--","--","Molecular Function: endopeptidase inhibitor activity (GO:0004866);; Molecular Function: peptidase activity (GO:0008233);; Biological Process: negative regulation of endopeptidase activity (GO:0010951);; ","--","--","--","Trypsin and protease inhibitor","Kunitz trypsin inhibitor 2 OS=Arabidopsis thaliana OX=3702 GN=KTI2 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: miraculin-like [Gossypium hirsutum] "]
["c70349.graph_c0","[R]","General function prediction only ","Cellular Component: incipient cellular bud site (GO:0000131);; Cellular Component: 1,3-beta-D-glucan synthase complex (GO:0000148);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: peroxisome (GO:0005777);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: cellular bud tip (GO:0005934);; Cellular Component: cellular bud neck (GO:0005935);; Biological Process: budding cell bud growth (GO:0007117);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: regulation of cell size (GO:0008361);; Biological Process: actin cytoskeleton reorganization (GO:0031532);; Biological Process: regulation of vacuole fusion, non-autophagic (GO:0032889);; Cellular Component: mating projection tip (GO:0043332);; Biological Process: positive regulation of endocytosis (GO:0045807);; Biological Process: regulation of exocyst localization (GO:0060178);; Biological Process: regulation of fungal-type cell wall organization (GO:0060237);; Biological Process: positive regulation of protein kinase C signaling (GO:0090037);; Biological Process: regulation of cell wall (1->3)-beta-D-glucan biosynthetic process (GO:0090334);; ","K04392|4.50836e-41|vra:106766755|K04392 Ras-related C3 botulinum toxin substrate 1 | (RefSeq) rac-like GTP-binding protein RAC13","[R]","General function prediction only ","Ras family;; Ras of Complex, Roc, domain of DAPkinase","Rac-like GTP-binding protein RAC1 OS=Lotus japonicus OX=34305 GN=RAC1 PE=2 SV=1","S","Function unknown","Rho type ras-related small GTPase [Basidiobolus meristosporus CBS 931.73]"]
["c39164.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; ","--","--","--","--","Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1","S","Function unknown","uncharacterized protein LOC111312582 isoform X2 [Durio zibethinus]"]
["c64378.graph_c0","--","--","--","--","[R]","General function prediction only ","--","F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1","S","Function unknown","F-box/kelch-repeat protein At1g80440-like [Herrania umbratica]"]
["c53569.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105768992 [Gossypium raimondii] "]
["c90105.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c43237.graph_c0","--","--","Molecular Function: double-stranded DNA binding (GO:0003690);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K15032|1.42992e-156|tcc:TCM_021176|K15032 mTERF domain-containing protein, mitochondrial | (RefSeq) Mitochondrial transcription termination factor family protein, putative isoform 1","[KR]","--","mTERF","Transcription termination factor MTERF15, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF15 PE=2 SV=1","S","Function unknown","uncharacterized protein LOC111306837 [Durio zibethinus]"]
["c43261.graph_c2","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02929|5.48667e-68|gra:105780489|K02929 large subunit ribosomal protein L44e | (RefSeq) 60S ribosomal protein L44-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L44","60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3","J","Translation, ribosomal structure and biogenesis","hypothetical protein B456_013G070100 [Gossypium raimondii]"]
["c47063.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein COLO4_18793 [Corchorus olitorius]"]
["c33384.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ligase activity (GO:0016874);; ","K10592|5.01899e-20|gra:105770143|K10592 E3 ubiquitin-protein ligase HUWE1 [EC:2.3.2.26] | (RefSeq) E3 ubiquitin-protein ligase UPL2-like","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","E3 ubiquitin-protein ligase UPL1 -like protein [Gossypium arboreum]"]
["c62281.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","PB1 domain","CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana OX=3702 GN=CBSCBSPB5 PE=1 SV=1","S","Function unknown","PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform X2 [Gossypium arboreum]"]
["c41519.graph_c2","--","--","--","K19476|2.21078e-113|gra:105770594|K19476 vacuolar protein sorting-associated protein IST1 | (RefSeq) uncharacterized LOC105770594","[Z]","Cytoskeleton ","Regulator of Vps4 activity in the MVB pathway","--","S","Function unknown","hypothetical protein B456_009G133700 [Gossypium raimondii]"]
["c37973.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: calcium-dependent phospholipid binding (GO:0005544);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; ","--","[R]","General function prediction only ","C2 domain","--","S","Function unknown","hypothetical protein GOBAR_DD23140 [Gossypium barbadense]"]
["c9416.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K13754|1.14053e-92|tcc:TCM_025817|K13754 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 | (RefSeq) Sodium/calcium exchanger family protein isoform 1","[P]","Inorganic ion transport and metabolism ","Sodium/calcium exchanger protein","Cation/calcium exchanger 2 OS=Arabidopsis thaliana OX=3702 GN=CCX2 PE=3 SV=1","P","Inorganic ion transport and metabolism","cation/calcium exchanger 2-like [Durio zibethinus]"]
["c48328.graph_c0","--","--","Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Biological Process: protein deubiquitination (GO:0016579);; Molecular Function: thiol-dependent ubiquitinyl hydrolase activity (GO:0036459);; ","K11838|0|rcu:8259815|K11838 ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-terminal hydrolase 12","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin carboxyl-terminal hydrolase;; MATH domain;; Ubiquitin carboxyl-terminal hydrolase;; ICP0-binding domain of Ubiquitin-specific protease 7;; ICP0-binding domain of Ubiquitin-specific protease 7","Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 [Corchorus capsularis]"]
["c9862.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K14510|1.24883e-30|gra:105767392|K14510 serine/threonine-protein kinase CTR1 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase CTR1-like","[T]","Signal transduction mechanisms ","Protein tyrosine kinase","Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana OX=3702 GN=CTR1 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD00095 [Gossypium barbadense]"]
["c16706.graph_c0","--","--","Molecular Function: exonuclease activity (GO:0004527);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC110420588 [Herrania umbratica]"]
["c54799.graph_c0","--","--","Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: steroid biosynthetic process (GO:0006694);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: oxidation-reduction process (GO:0055114);; ","K07748|4.8053e-18|gra:105796377|K07748 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) [EC:1.1.1.170] | (RefSeq) 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like","--","--","--","--","M","Cell wall/membrane/envelope biogenesis","hypothetical protein B456_005G015600 [Gossypium raimondii]"]
["c25637.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC109227719 [Nicotiana attenuata]"]
["c44583.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: mRNA (guanine-N7-)-methyltransferase activity (GO:0004482);; Cellular Component: nucleus (GO:0005634);; Biological Process: 7-methylguanosine mRNA capping (GO:0006370);; Biological Process: RNA (guanine-N7)-methylation (GO:0036265);; ","K00565|5.05355e-163|gra:105783003|K00565 mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] | (RefSeq) mRNA cap guanine-N7 methyltransferase 1","[A]","RNA processing and modification ","mRNA capping enzyme;; mRNA capping enzyme","mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=At3g20650 PE=2 SV=1","A","RNA processing and modification","hypothetical protein F383_20413 [Gossypium arboreum]"]
["c81615.graph_c0","--","--","--","K10523|1.73786e-06|bdi:100825415|K10523 speckle-type POZ protein | (RefSeq) BTB/POZ and MATH domain-containing protein 2-like","--","--","BTB/POZ domain","--","S","Function unknown","--"]
["c42133.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","Protein SINE1 OS=Arabidopsis thaliana OX=3702 GN=SINE1 PE=1 SV=1","S","Function unknown","protein SINE1-like [Durio zibethinus]"]
["c35578.graph_c2","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K17506|3.72412e-06|tcc:TCM_042479|K17506 protein phosphatase 1L [EC:3.1.3.16] | (RefSeq) Phosphatase 2C5","--","--","--","--","--","--","hypothetical protein GOBAR_AA06562 [Gossypium barbadense]"]
["c94440.graph_c0","--","--","Cellular Component: fungal-type vacuole (GO:0000324);; Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: protein catabolic process in the vacuole (GO:0007039);; Biological Process: phytochelatin biosynthetic process (GO:0046938);; Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603);; ","--","--","--","Carboxypeptidase Y pro-peptide","--","E","Amino acid transport and metabolism","hypothetical protein IQ06DRAFT_323747 [Stagonospora sp. SRC1lsM3a]"]
["c43072.graph_c0","[R]","General function prediction only ","--","--","[S]","Function unknown ","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain","COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1","S","Function unknown","PREDICTED: autophagic-related protein 16.2-like isoform X2 [Gossypium hirsutum]"]
["c46159.graph_c0","[E]","Amino acid transport and metabolism ","--","K00600|0|gra:105772902|K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] | (RefSeq) serine hydroxymethyltransferase 3, chloroplastic-like","[E]","Amino acid transport and metabolism ","Serine hydroxymethyltransferase","Serine hydroxymethyltransferase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SHM3 PE=1 SV=2","E","Amino acid transport and metabolism","PREDICTED: serine hydroxymethyltransferase 3, chloroplastic-like [Gossypium arboreum] "]
["c63244.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Biological Process: single-organism process (GO:0044699);; ","--","--","--","--","--","K","Transcription","PREDICTED: ethylene-responsive transcription factor ESR2-like [Gossypium raimondii] "]
["c89817.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c19834.graph_c0","--","--","Molecular Function: transferase activity (GO:0016740);; ","K00695|1.2237e-15|jcu:105638031|K00695 sucrose synthase [EC:2.4.1.13] | (RefSeq) SuSy; sucrose synthase","[M]","Cell wall/membrane/envelope biogenesis ","--","Sucrose synthase OS=Alnus glutinosa OX=3517 GN=SUS1 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","sucrose synthase-like [Durio zibethinus]"]
["c58929.graph_c0","--","--","Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; ","--","--","--","--","Non-specific lipid-transfer protein 1 OS=Pisum sativum OX=3888 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: non-specific lipid-transfer protein 1-like [Juglans regia]"]
["c62813.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: translational elongation (GO:0006414);; ","K03234|0|gsl:Gasu_50880|K03234 elongation factor 2 | (RefSeq) elongation factor EF-2","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor G, domain IV;; Elongation factor G C-terminus;; Elongation Factor G, domain II;; Elongation factor Tu domain 2","Elongation factor 2 OS=Beta vulgaris OX=161934 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c78888.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Spectrin repeat","--","Z","Cytoskeleton","--"]
["c43259.graph_c0","--","--","Biological Process: pattern recognition receptor signaling pathway (GO:0002221);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: defense response to bacterium, incompatible interaction (GO:0009816);; Biological Process: protein autophosphorylation (GO:0046777);; ","K13430|2.70978e-115|tcc:TCM_008494|K13430 serine/threonine-protein kinase PBS1 [EC:2.7.11.1] | (RefSeq) Kinase superfamily protein","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain","Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana OX=3702 GN=PBS1 PE=1 SV=1","T","Signal transduction mechanisms","Kinase superfamily protein [Theobroma cacao]"]
["c36598.graph_c0","--","--","--","K17362|1.04383e-16|tcc:TCM_001674|K17362 acyl-coenzyme A thioesterase 13 [EC:3.1.2.-] | (RefSeq) Thioesterase superfamily protein isoform 1","[R]","General function prediction only ","--","--","Q","Secondary metabolites biosynthesis, transport and catabolism","Thioesterase superfamily protein isoform 3 [Theobroma cacao]"]
["c35483.graph_c0","--","--","--","--","[R]","General function prediction only ","C2H2-type zinc finger;; C2H2-type zinc finger;; Zinc-finger double-stranded RNA-binding","Zinc finger protein ZAT10 OS=Arabidopsis thaliana OX=3702 GN=ZAT10 PE=2 SV=1","S","Function unknown","zinc finger protein ZAT10-like [Durio zibethinus]"]
["c92076.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein ACHHYP_17244 [Achlya hypogyna]"]
["c26968.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","GDSL-like Lipase/Acylhydrolase","GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana OX=3702 GN=At1g29660 PE=1 SV=1","S","Function unknown","PREDICTED: GDSL esterase/lipase At1g29660-like [Gossypium hirsutum]"]
["c23584.graph_c0","--","--","--","--","--","--","PB1 domain","Protein NLP4 OS=Arabidopsis thaliana OX=3702 GN=NLP4 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA22709 [Gossypium barbadense]"]
["c23516.graph_c0","--","--","--","--","--","--","--","--","--","--","protein WVD2-like 4 [Durio zibethinus]"]
["c37764.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105785104 [Gossypium raimondii] "]
["c29780.graph_c0","--","--","Biological Process: cellular protein modification process (GO:0006464);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: ligase activity (GO:0016874);; ","K16609|0|gra:105772928|K16609 tubulin--tyrosine ligase-like protein 12 | (RefSeq) tubulin--tyrosine ligase-like protein 12","[O]","Posttranslational modification, protein turnover, chaperones ","Tubulin-tyrosine ligase family","--","S","Function unknown","PREDICTED: tubulin--tyrosine ligase-like protein 12 [Gossypium arboreum]"]
["c86404.graph_c0","[V]","Defense mechanisms ","--","--","--","--","--","--","L","Replication, recombination and repair","--"]
["c47205.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Endonuclease/Exonuclease/phosphatase family","Type IV inositol polyphosphate 5-phosphatase 7 OS=Arabidopsis thaliana OX=3702 GN=IP5P7 PE=1 SV=1","T","Signal transduction mechanisms","type I inositol polyphosphate 5-phosphatase 4 [Herrania umbratica]"]
["c57147.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA22698 [Gossypium barbadense]"]
["c89082.graph_c0","[U]","Intracellular trafficking, secretion, and vesicular transport ","Biological Process: protein transport (GO:0015031);; Cellular Component: integral component of membrane (GO:0016021);; ","K10956|4.56639e-40|pxb:103934872|K10956 protein transport protein SEC61 subunit alpha | (RefSeq) protein transport protein Sec61 subunit alpha-like","[UO]","--","SecY translocase","Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina OX=3034 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","protein transport protein Sec61 subunit alpha-like, partial [Carica papaya]"]
["c13977.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E42 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g50270-like [Gossypium hirsutum] "]
["c24038.graph_c0","[R]","General function prediction only ","--","--","[T]","Signal transduction mechanisms ","NB-ARC domain;; AAA domain","Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana OX=3702 GN=At1g50180 PE=3 SV=2","S","Function unknown","PREDICTED: putative disease resistance protein At1g50180 [Theobroma cacao] "]
["c52559.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K13424|1.39768e-24|gra:105789043|K13424 WRKY transcription factor 33 | (RefSeq) probable WRKY transcription factor 25","--","--","--","--","K","Transcription","hypothetical protein B456_003G150700 [Gossypium raimondii] "]
["c18436.graph_c0","--","--","Biological Process: cutin biosynthetic process (GO:0010143);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: phosphatase activity (GO:0016791);; Molecular Function: glycerol-3-phosphate 2-O-acyltransferase activity (GO:0090447);; ","K13508|0|gra:105791470|K13508 glycerol-3-phosphate acyltransferase [EC:2.3.1.15] | (RefSeq) probable glycerol-3-phosphate acyltransferase 3","--","--","Acyltransferase","Probable glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GPAT3 PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein GOBAR_DD20510 [Gossypium barbadense]"]
["c37622.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[E]","Amino acid transport and metabolism ","Transmembrane amino acid transporter protein;; Transmembrane amino acid transporter protein;; Transmembrane amino acid transporter protein","Lysine histidine transporter-like 7 OS=Arabidopsis thaliana OX=3702 GN=At4g35180 PE=2 SV=2","E","Amino acid transport and metabolism","PREDICTED: lysine histidine transporter-like 7 [Gossypium hirsutum]"]
["c88138.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","[R]","General function prediction only ","--","1-acylglycerol-3-phosphate O-acyltransferase OS=Arabidopsis thaliana OX=3702 GN=At4g24160 PE=1 SV=1","S","Function unknown","probable 1-acylglycerol-3-phosphate O-acyltransferase [Morus notabilis]"]
["c87434.graph_c0","--","--","--","--","[R]","General function prediction only ","Intracellular hyaluronan-binding protein 4 N-terminal","--","S","Function unknown","--"]
["c4817.graph_c0","--","--","--","--","--","--","Terpene synthase family, metal binding domain","(+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum OX=29729 GN=CAD1-A PE=2 SV=1","S","Function unknown","PREDICTED: probable terpene synthase 2 [Gossypium raimondii]"]
["c30722.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[A]","RNA processing and modification ","RING-variant domain","--","O","Posttranslational modification, protein turnover, chaperones","uncharacterized protein LOC110428383 [Herrania umbratica]"]
["c38642.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: actin filament organization (GO:0007015);; Molecular Function: actin filament binding (GO:0051015);; ","--","--","--","Cellulase (glycosyl hydrolase family 5)","--","G","Carbohydrate transport and metabolism","PREDICTED: glucan 1,3-beta-glucosidase A-like [Gossypium arboreum]"]
["c48935.graph_c0","--","--","--","K17592|0|gra:105764150|K17592 sacsin | (RefSeq) sacsin","--","--","Zinc finger, C3HC4 type (RING finger);; Prokaryotic RING finger family 4","--","S","Function unknown","PREDICTED: sacsin [Gossypium arboreum]"]
["c24142.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal large subunit assembly (GO:0000027);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02925|4.37607e-139|atr:18431058|K02925 large subunit ribosomal protein L3e | (RefSeq) 60S ribosomal protein L3","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L3","60S ribosomal protein L3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL3 PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein M408DRAFT_149681 [Serendipita vermifera MAFF 305830]"]
["c63966.graph_c0","--","--","Molecular Function: diacylglycerol kinase activity (GO:0004143);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway (GO:0007205);; Biological Process: phosphorylation (GO:0016310);; ","K00901|1.70647e-51|gra:105764183|K00901 diacylglycerol kinase (ATP) [EC:2.7.1.107] | (RefSeq) diacylglycerol kinase 5-like","[IT]","--","--","Diacylglycerol kinase 5 OS=Arabidopsis thaliana OX=3702 GN=DGK5 PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein GOBAR_DD28882 [Gossypium barbadense]"]
["c31928.graph_c0","--","--","--","K09422|6.81925e-59|gra:105789798|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor MYB39-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB93 OS=Arabidopsis thaliana OX=3702 GN=MYB93 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor MYB39-like [Gossypium hirsutum]"]
["c33893.graph_c1","--","--","--","--","[R]","General function prediction only ","Retroviral aspartyl protease","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107960315 [Gossypium hirsutum]"]
["c40800.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Lipase (class 3)","Lipase-like PAD4 OS=Arabidopsis thaliana OX=3702 GN=PAD4 PE=1 SV=1","S","Function unknown","lipase-like PAD4 isoform X1 [Durio zibethinus]"]
["c34654.graph_c0","--","--","Cellular Component: nuclear nucleosome (GO:0000788);; Molecular Function: DNA binding (GO:0003677);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11252|4.89677e-32|aly:ARALYDRAFT_912258|K11252 histone H2B | (RefSeq) hypothetical protein","[B]","Chromatin structure and dynamics ","Core histone H2A/H2B/H3/H4","Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3","B","Chromatin structure and dynamics","hypothetical protein ARALYDRAFT_912258 [Arabidopsis lyrata subsp. lyrata]"]
["c17284.graph_c0","--","--","Cellular Component: vacuole (GO:0005773);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: membrane part (GO:0044425);; Cellular Component: intracellular organelle part (GO:0044446);; ","K13249|5.6872e-17|fve:101304337|K13249 translocon-associated protein subunit alpha | (RefSeq) translocon-associated protein subunit alpha","--","--","--","--","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: translocon-associated protein subunit alpha [Fragaria vesca subsp. vesca]"]
["c93523.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Biological Process: heme biosynthetic process (GO:0006783);; Biological Process: folic acid-containing compound biosynthetic process (GO:0009396);; Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272);; Biological Process: negative regulation of ATPase activity (GO:0032780);; Biological Process: tetrahydrofolate interconversion (GO:0035999);; Molecular Function: ATPase inhibitor activity (GO:0042030);; Molecular Function: ATPase binding (GO:0051117);; ","--","--","--","Mitochondrial ATPase inhibitor, IATP","--","S","Function unknown","hypothetical protein BCR39DRAFT_511371 [Naematelia encephala]"]
["c93297.graph_c0","--","--","Cellular Component: plastid (GO:0009536);; ","--","--","--","--","--","S","Function unknown","hypothetical protein TRIUR3_24798 [Triticum urartu]"]
["c46998.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: apoplast (GO:0048046);; ","K01188|0|gra:105783838|K01188 beta-glucosidase [EC:3.2.1.21] | (RefSeq) beta-glucosidase 40-like","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolase family 1;; Pollen allergen;; Lytic transglycolase","Beta-glucosidase 40 OS=Arabidopsis thaliana OX=3702 GN=BGLU40 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: beta-glucosidase 40-like [Gossypium raimondii] "]
["c45377.graph_c0","--","--","Molecular Function: glycerol-3-phosphate O-acyltransferase activity (GO:0004366);; Biological Process: metabolic process (GO:0008152);; Cellular Component: integral component of membrane (GO:0016021);; ","K13508|0|gra:105802704|K13508 glycerol-3-phosphate acyltransferase [EC:2.3.1.15] | (RefSeq) probable glycerol-3-phosphate acyltransferase 8","--","--","Acyltransferase","Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana OX=3702 GN=GPAT8 PE=2 SV=1","I","Lipid transport and metabolism","hypothetical protein GOBAR_DD12795 [Gossypium barbadense]"]
["c95630.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","SNARE associated Golgi protein","--","S","Function unknown","hypothetical protein COCSADRAFT_120877 [Bipolaris sorokiniana ND90Pr] "]
["c4022.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","K19041|1.43189e-11|gra:105799860|K19041 E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27] | (RefSeq) RING-H2 finger protein ATL33-like","--","--","--","--","--","--","RING-H2 finger protein ATL33-like [Durio zibethinus]"]
["c36340.graph_c0","--","--","--","--","[P]","Inorganic ion transport and metabolism ","--","K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=KEA2 PE=1 SV=2","P","Inorganic ion transport and metabolism","PREDICTED: K(+) efflux antiporter 2, chloroplastic [Ipomoea nil] "]
["c93091.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","Cytochrome P450","Alkane hydroxylase MAH1 OS=Arabidopsis thaliana OX=3702 GN=CYP96A15 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: alkane hydroxylase MAH1-like [Gossypium hirsutum]"]
["c7010.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Biological Process: primary metabolic process (GO:0044238);; Biological Process: cellular macromolecule metabolic process (GO:0044260);; ","--","[R]","General function prediction only ","GAG-pre-integrase domain","Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1","L","Replication, recombination and repair","Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Apostasia shenzhenica]"]
["c70657.graph_c0","--","--","--","--","--","--","--","--","--","--","DNA ligase 1-like isoform X5 [Durio zibethinus]"]
["c83322.graph_c0","--","--","--","--","[R]","General function prediction only ","Ezrin/radixin/moesin family","--","S","Function unknown","--"]
["c25809.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: plastoglobule (GO:0010287);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; ","K08915|1.82072e-26|mtr:MTR_4g015570|K08915 light-harvesting complex II chlorophyll a/b binding protein 4 | (RefSeq) light-harvesting complex I chlorophyll A/B-binding protein","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1","I","Lipid transport and metabolism","light-harvesting complex I chlorophyll A/B-binding protein [Medicago truncatula] "]
["c76837.graph_c0","--","--","--","--","--","--","--","--","--","--","ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like [Carica papaya]"]
["c85918.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: cellulase activity (GO:0008810);; Biological Process: cellulose catabolic process (GO:0030245);; ","--","--","--","Glycosyl hydrolase family 9","Endoglucanase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=GLU8 PE=2 SV=1","S","Function unknown","hypothetical protein JCGZ_26243 [Jatropha curcas]"]
["c51500.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1","T","Signal transduction mechanisms","receptor-like kinase TMK3 [Durio zibethinus]"]
["c34793.graph_c0","--","--","Cellular Component: ribosome (GO:0005840);; ","K02975|1.06376e-44|fve:101301719|K02975 small subunit ribosomal protein S25e | (RefSeq) 40S ribosomal protein S25","[J]","Translation, ribosomal structure and biogenesis ","S25 ribosomal protein","40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S25 [Fragaria vesca subsp. vesca] "]
["c22415.graph_c0","--","--","Cellular Component: plasma membrane (GO:0005886);; ","--","--","--","--","--","S","Function unknown","myeloid leukemia factor 1-like [Durio zibethinus]"]
["c51829.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: protein app1-like [Gossypium raimondii] "]
["c37453.graph_c1","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: catalytic activity (GO:0003824);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA metabolic process (GO:0006259);; ","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_024743, partial [Vitis vinifera]"]
["c25151.graph_c4","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Endomembrane protein 70","Transmembrane 9 superfamily member 11 OS=Arabidopsis thaliana OX=3702 GN=TMN11 PE=2 SV=1","S","Function unknown","transmembrane 9 superfamily member 11 [Quercus suber]"]
["c93143.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; Biological Process: recognition of pollen (GO:0048544);; ","--","--","--","--","G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana OX=3702 GN=B120 PE=2 SV=1","T","Signal transduction mechanisms","G-type lectin S-receptor-like serine/threonine-protein kinase B120 [Durio zibethinus]"]
["c32671.graph_c0","--","--","Molecular Function: translation initiation factor activity (GO:0003743);; Biological Process: translational initiation (GO:0006413);; Cellular Component: integral component of membrane (GO:0016021);; ","K03113|1.63102e-25|gra:105780290|K03113 translation initiation factor 1 | (RefSeq) protein translation factor SUI1 homolog 2-like","[J]","Translation, ribosomal structure and biogenesis ","Translation initiation factor SUI1","Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g54290 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein GOBAR_AA25430 [Gossypium barbadense]"]
["c84273.graph_c0","--","--","--","--","--","--","Tetraspanin family","--","--","--","--"]
["c21500.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF688)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108488672 [Gossypium arboreum]"]
["c88027.graph_c0","[R]","General function prediction only ","--","--","[MW]","--","Fasciclin domain","--","M","Cell wall/membrane/envelope biogenesis","beta-Ig-H3/fasciclin, partial [Fragilariopsis cylindrus CCMP1102]"]
["c8035.graph_c0","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Ras-related protein RABA1f OS=Arabidopsis thaliana OX=3702 GN=RABA1F PE=2 SV=1","S","Function unknown","hypothetical protein B456_013G172400 [Gossypium raimondii]"]
["c37312.graph_c0","--","--","--","--","[S]","Function unknown ","Anticodon-binding domain","--","S","Function unknown","PREDICTED: protein LSM12 homolog [Gossypium raimondii] "]
["c71940.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02983|1.96501e-10|mtr:MTR_4g100900|K02983 small subunit ribosomal protein S30e | (RefSeq) 40S ribosomal S30-like protein","[JO]","--","Ribosomal protein S30","40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3","J","Translation, ribosomal structure and biogenesis","ribosomal protein S30 [Fragilariopsis cylindrus CCMP1102]"]
["c94009.graph_c0","--","--","--","--","--","--","Mitochondrial inner membrane protein","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c68828.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA30101 [Gossypium barbadense]"]
["c56497.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02976|3.50366e-49|aly:ARALYDRAFT_483116|K02976 small subunit ribosomal protein S26e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S26e","40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2","J","Translation, ribosomal structure and biogenesis","protein of unknown function [Taphrina deformans PYCC 5710]"]
["c23559.graph_c0","--","--","--","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","Protein IMPAIRED IN BABA-INDUCED STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=IBS1 PE=3 SV=1","T","Signal transduction mechanisms","hypothetical protein COLO4_35590 [Corchorus olitorius]"]
["c67402.graph_c0","--","--","--","--","--","--","Prokineticin","--","--","--","--"]
["c70197.graph_c0","--","--","--","K07766|6.86436e-09|gra:105785640|K07766 diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] | (RefSeq) nudix hydrolase 18, mitochondrial-like","--","--","--","--","--","--","hypothetical protein GOBAR_AA11440 [Gossypium barbadense]"]
["c22557.graph_c0","--","--","Molecular Function: actin binding (GO:0003779);; Cellular Component: actin cytoskeleton (GO:0015629);; Biological Process: actin filament depolymerization (GO:0030042);; ","K05765|2.80892e-27|gra:105785902|K05765 cofilin | (RefSeq) actin-depolymerizing factor 5-like","[Z]","Cytoskeleton ","Cofilin/tropomyosin-type actin-binding protein","Actin-depolymerizing factor 5 OS=Arabidopsis thaliana OX=3702 GN=ADF5 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD10352 [Gossypium barbadense]"]
["c39449.graph_c0","[K]","Transcription ","Biological Process: microtubule bundle formation (GO:0001578);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: steroid binding (GO:0005496);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endosome (GO:0005768);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: skotomorphogenesis (GO:0009647);; Biological Process: detection of brassinosteroid stimulus (GO:0009729);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: response to UV-B (GO:0010224);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: leaf development (GO:0048366);; Biological Process: anther wall tapetum cell differentiation (GO:0048657);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: regulation of seedling development (GO:1900140);; ","K13415|6.6848e-64|gra:105787882|K13415 protein brassinosteroid insensitive 1 [EC:2.7.10.1 2.7.11.1] | (RefSeq) protein BRASSINOSTEROID INSENSITIVE 1-like","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies)","Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana OX=3702 GN=BRI1 PE=1 SV=1","S","Function unknown","PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1-like, partial [Gossypium arboreum]"]
["c91596.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107895822 [Gossypium hirsutum]"]
["c90804.graph_c0","--","--","--","--","[OR]","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c69702.graph_c0","--","--","Biological Process: single-organism cellular process (GO:0044763);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","PRELI-like family","--","S","Function unknown","hypothetical protein LIPSTDRAFT_55487 [Lipomyces starkeyi NRRL Y-11557]"]
["c49149.graph_c1","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: homogalacturonan biosynthetic process (GO:0010289);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; Biological Process: root development (GO:0048364);; Biological Process: shoot system development (GO:0048367);; ","--","--","--","Putative S-adenosyl-L-methionine-dependent methyltransferase;; Putative S-adenosyl-L-methionine-dependent methyltransferase","Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana OX=3702 GN=QUA2 PE=1 SV=2","S","Function unknown","PREDICTED: probable pectin methyltransferase QUA2 isoform X1 [Gossypium hirsutum] "]
["c23728.graph_c0","--","--","--","--","--","--","Insulin/IGF/Relaxin family","--","--","--","--"]
["c61694.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_013G212800 [Gossypium raimondii]"]
["c39500.graph_c0","--","--","--","--","--","--","IQ calmodulin-binding motif","Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana OX=3702 GN=IQD14 PE=1 SV=1","S","Function unknown","Protein IQ-DOMAIN 14 -like protein [Gossypium arboreum]"]
["c31651.graph_c0","--","--","--","--","--","--","--","IQ domain-containing protein IQM2 OS=Arabidopsis thaliana OX=3702 GN=IQM2 PE=2 SV=1","S","Function unknown","IQ domain-containing protein IQM2-like [Durio zibethinus]"]
["c47446.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Biological Process: cellular metabolic process (GO:0044237);; ","K12823|0|gra:105779642|K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 46-like","[A]","RNA processing and modification ","DEAD/DEAH box helicase;; Helicase conserved C-terminal domain;; WW domain","DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2","L","Replication, recombination and repair","Shaggy-related protein kinase epsilon [Morus notabilis]"]
["c40352.graph_c0","--","--","--","K11799|3.3816e-84|gra:105802225|K11799 WD repeat-containing protein 21A | (RefSeq) DDB1- and CUL4-associated factor 4","[R]","General function prediction only ","--","--","S","Function unknown","hypothetical protein B456_007G055200 [Gossypium raimondii]"]
["c75987.graph_c0","--","--","--","--","[S]","Function unknown ","--","Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1","S","Function unknown","PREDICTED: protein SPIRRIG isoform X2 [Theobroma cacao]"]
["c34979.graph_c0","--","--","Cellular Component: anaphase-promoting complex (GO:0005680);; Biological Process: regulation of mitotic cell cycle spindle assembly checkpoint (GO:0090266);; ","--","--","--","Anaphase-promoting complex subunit 15","--","S","Function unknown","PREDICTED: ran GTPase-activating protein 1 [Gossypium raimondii] "]
["c42777.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111293094 isoform X1 [Durio zibethinus]"]
["c83971.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Cellular Component: membrane (GO:0016020);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","K05284|1.4445e-10|mdm:103445234|K05284 phosphatidylinositol glycan, class M [EC:2.4.1.-] | (RefSeq) GPI mannosyltransferase 1-like","[G]","Carbohydrate transport and metabolism ","Mannosyltransferase (PIG-M)","GPI mannosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=PIGM PE=2 SV=1","S","Function unknown","glycosyltransferase family 50 [Beauveria bassiana ARSEF 2860] "]
["c37560.graph_c0","--","--","Cellular Component: peroxisomal membrane (GO:0005778);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: protein import into peroxisome matrix, docking (GO:0016560);; ","K13343|2.60039e-98|gra:105794652|K13343 peroxin-14 | (RefSeq) peroxisomal membrane protein PEX14-like","[MOU]","--","Peroxisomal membrane anchor protein (Pex14p) conserved region","Peroxisomal membrane protein PEX14 OS=Arabidopsis thaliana OX=3702 GN=PEX14 PE=1 SV=2","S","Function unknown","hypothetical protein B456_005G182200 [Gossypium raimondii]"]
["c15778.graph_c0","--","--","--","--","[K]","Transcription ","SRF-type transcription factor (DNA-binding and dimerisation domain)","Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1","K","Transcription","hypothetical protein CISIN_1g039654mg [Citrus sinensis]"]
["c77122.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: ATP biosynthetic process (GO:0006754);; Molecular Function: hydrogen-exporting ATPase activity, phosphorylative mechanism (GO:0008553);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: regulation of intracellular pH (GO:0051453);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","K01535|5.70209e-32|cme:CYME_CMQ247C|K01535 H+-transporting ATPase [EC:3.6.3.6] | (RefSeq) plasma membrane H+-ATPase","[P]","Inorganic ion transport and metabolism ","E1-E2 ATPase","Plasma membrane ATPase 1 OS=Solanum lycopersicum OX=4081 GN=LHA1 PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein CVT24_012859 [Panaeolus cyanescens]"]
["c52302.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: intracellular signal transduction (GO:0035556);; ","--","--","--","C1 domain;; Zinc finger, ZZ type","Probable nucleoredoxin 1 OS=Arabidopsis thaliana OX=3702 GN=At1g60420 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC108478885 [Gossypium arboreum]"]
["c44695.graph_c0","[V]","Defense mechanisms ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","K14837|0|gra:105764995|K14837 nucleolar protein 12 | (RefSeq) RNA-binding protein 34","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);; RNA recognition motif","ABC transporter B family member 2 OS=Arabidopsis thaliana OX=3702 GN=ABCB2 PE=1 SV=3","S","Function unknown","PREDICTED: RNA-binding protein 34 [Gossypium arboreum] "]
["c6624.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: catalytic activity (GO:0003824);; ","K00665|5.66537e-26|csl:COCSUDRAFT_49000|K00665 fatty acid synthase, animal type [EC:2.3.1.85] | (RefSeq) hypothetical protein","[I]","Lipid transport and metabolism ","Ketoacyl-synthetase C-terminal extension;; Beta-ketoacyl synthase, C-terminal domain","--","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein CDV58_00523 [Aspergillus fumigatus]"]
["c53598.graph_c0","--","--","Molecular Function: chitinase activity (GO:0004568);; Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: chitin catabolic process (GO:0006032);; Cellular Component: integral component of membrane (GO:0016021);; ","K01183|2.73288e-47|gra:105766143|K01183 chitinase [EC:3.2.1.14] | (RefSeq) chitotriosidase-1-like","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 18","Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_AA12048 [Gossypium barbadense]"]
["c49723.graph_c0","--","--","--","--","[R]","General function prediction only ","Zinc knuckle;; gag-polypeptide of LTR copia-type","--","S","Function unknown","DUF4219 domain-containing protein/UBN2 domain-containing protein [Cephalotus follicularis]"]
["c4474.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_009G417700 [Gossypium raimondii]"]
["c34269.graph_c0","--","--","Cellular Component: cytoplasmic part (GO:0044444);; ","K12875|1.76646e-25|tcc:TCM_001192|K12875 apoptotic chromatin condensation inducer in the nucleus | (RefSeq) SAP domain-containing protein isoform 1","[B]","Chromatin structure and dynamics ","--","--","S","Function unknown","SAP domain-containing protein isoform 2 [Theobroma cacao]"]
["c90794.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","--","--","S","Function unknown","--"]
["c72291.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","--","--","--","L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK42 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD10693 [Gossypium barbadense]"]
["c10200.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: phosphoribosylanthranilate isomerase activity (GO:0004640);; Biological Process: tryptophan metabolic process (GO:0006568);; ","K01817|5.78648e-21|adu:107469449|K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] | (RefSeq) N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic-like","[E]","Amino acid transport and metabolism ","N-(5'phosphoribosyl)anthranilate (PRA) isomerase","N-(5&apos;-phosphoribosyl)anthranilate isomerase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAI1 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: N-(5&apos;-phosphoribosyl)anthranilate isomerase 1, chloroplastic-like isoform X1 [Gossypium hirsutum]"]
["c581.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD33274 [Gossypium barbadense]"]
["c39979.graph_c0","--","--","--","--","--","--","Rapid ALkalinization Factor (RALF)","Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein TSUD_104310 [Trifolium subterraneum]"]
["c54779.graph_c0","--","--","Cellular Component: endosome (GO:0005768);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: cytosol (GO:0005829);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; ","K20359|2.28889e-25|gra:105786588|K20359 PRA1 family protein 1 | (RefSeq) PRA1 family protein B4","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","PRA1 family protein B4 OS=Arabidopsis thaliana OX=3702 GN=PRA1B4 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein GOBAR_AA24067 [Gossypium barbadense]"]
["c70379.graph_c0","--","--","--","--","--","--","NADH-ubiquinone oxidoreductase MWFE subunit","--","C","Energy production and conversion","--"]
["c54992.graph_c0","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Biological Process: proteolysis (GO:0006508);; Biological Process: unidimensional cell growth (GO:0009826);; Biological Process: salicylic acid mediated signaling pathway (GO:0009863);; Biological Process: xyloglucan biosynthetic process (GO:0009969);; Biological Process: endomembrane system organization (GO:0010256);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Cellular Component: integral component of Golgi membrane (GO:0030173);; Biological Process: fucose biosynthetic process (GO:0042353);; ","K20888|1.98739e-46|gra:105798519|K20888 xyloglucan galactosyltransferase MUR3 [EC:2.4.1.-] | (RefSeq) xyloglucan galactosyltransferase KATAMARI1","[GMW]","--","--","Xyloglucan galactosyltransferase MUR3 OS=Arabidopsis thaliana OX=3702 GN=MUR3 PE=1 SV=1","S","Function unknown","PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Gossypium raimondii]"]
["c25583.graph_c0","--","--","--","--","--","--","--","--","--","--","BTB/POZ and MATH domain-containing 4 -like protein [Gossypium arboreum]"]
["c46992.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC102627919 isoform X1 [Citrus sinensis]"]
["c71834.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: endosome (GO:0005768);; Biological Process: endocytosis (GO:0006897);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: membrane (GO:0016020);; Biological Process: endocytic recycling (GO:0032456);; Biological Process: hyperosmotic salinity response (GO:0042538);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Biological Process: protein homooligomerization (GO:0051260);; ","K12483|1.67379e-131|gra:105761174|K12483 EH domain-containing protein 1 | (RefSeq) EH domain-containing protein 1-like","[TU]","--","N-terminal EH-domain containing protein;; Cytoskeletal-regulatory complex EF hand","EH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=EHD1 PE=1 SV=1","S","Function unknown","PREDICTED: EH domain-containing protein 1-like isoform X2 [Gossypium raimondii]"]
["c21055.graph_c1","[I]","Lipid transport and metabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K08232|4.5345e-105|gra:105782180|K08232 monodehydroascorbate reductase (NADH) [EC:1.6.5.4] | (RefSeq) monodehydroascorbate reductase, seedling isozyme-like","[R]","General function prediction only ","Pyridine nucleotide-disulphide oxidoreductase","Monodehydroascorbate reductase OS=Solanum lycopersicum OX=4081 GN=AFRR PE=1 SV=1","S","Function unknown","PREDICTED: monodehydroascorbate reductase, seedling isozyme-like [Gossypium raimondii] "]
["c53885.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; Biological Process: phosphatidylinositol dephosphorylation (GO:0046856);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Type IV inositol polyphosphate 5-phosphatase 7 OS=Arabidopsis thaliana OX=3702 GN=IP5P7 PE=1 SV=1","T","Signal transduction mechanisms","Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 -like protein [Gossypium arboreum]"]
["c28878.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","PMR5 N terminal Domain","Protein trichome birefringence-like 19 OS=Arabidopsis thaliana OX=3702 GN=TBL19 PE=3 SV=1","S","Function unknown","PREDICTED: protein trichome birefringence-like 19 [Gossypium hirsutum]"]
["c47103.graph_c1","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; Biological Process: aerobic respiration (GO:0009060);; Biological Process: seed germination (GO:0009845);; ","K10406|0|gra:105768594|K10406 kinesin family member C2/C3 | (RefSeq) kinesin KP1-like","[Z]","Cytoskeleton ","Kinesin motor domain;; Calponin homology (CH) domain;; Microtubule binding","Kinesin-like protein KIN-14F OS=Arabidopsis thaliana OX=3702 GN=KIN14F PE=1 SV=2","Z","Cytoskeleton","Kinesin-like protein 1 isoform 2 [Theobroma cacao]"]
["c78837.graph_c0","--","--","--","--","[I]","Lipid transport and metabolism ","--","Phosphatidylinositol/phosphatidylcholine transfer protein SFH8 OS=Arabidopsis thaliana OX=3702 GN=SFH8 PE=2 SV=1","S","Function unknown","CRAL_TRIO domain-containing protein/CRAL_TRIO_N domain-containing protein [Cephalotus follicularis]"]
["c85085.graph_c0","--","--","--","--","--","--","GAG-pre-integrase domain","--","--","--","PREDICTED: uncharacterized protein LOC107956322 [Gossypium hirsutum]"]
["c47488.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: 6-phosphofructokinase activity (GO:0003872);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: fructose 6-phosphate metabolic process (GO:0006002);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: glycolytic process through fructose-6-phosphate (GO:0061615);; ","K00850|0|gra:105773620|K00850 6-phosphofructokinase 1 [EC:2.7.1.11] | (RefSeq) ATP-dependent 6-phosphofructokinase 3-like","[G]","Carbohydrate transport and metabolism ","Phosphofructokinase;; Gamma-glutamyltranspeptidase;; Gamma-glutamyltranspeptidase","ATP-dependent 6-phosphofructokinase 3 OS=Arabidopsis thaliana OX=3702 GN=PFK3 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: ATP-dependent 6-phosphofructokinase 3-like [Gossypium hirsutum]"]
["c53289.graph_c0","--","--","--","K04382|1.28379e-22|tcc:TCM_045760|K04382 serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] | (RefSeq) Phosphatase 2A-2 isoform 1","[T]","Signal transduction mechanisms ","--","Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=PP2A2 PE=1 SV=1","T","Signal transduction mechanisms","Phosphatase 2A-2 isoform 1 [Theobroma cacao]"]
["c45837.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111312879 [Durio zibethinus]"]
["c44517.graph_c5","--","--","--","--","--","--","--","GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana OX=3702 GN=At4g10955 PE=2 SV=1","S","Function unknown","PREDICTED: GDSL esterase/lipase At4g10955-like isoform X2 [Gossypium raimondii] "]
["c8007.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_011G201400, partial [Gossypium raimondii]"]
["c40420.graph_c0","--","--","Cellular Component: proteasome complex (GO:0000502);; ","K03035|1.91259e-18|tcc:TCM_025213|K03035 26S proteasome regulatory subunit N5 | (RefSeq) 26S proteasome regulatory subunit (RPN5), putative isoform 1","[O]","Posttranslational modification, protein turnover, chaperones ","--","26S proteasome non-ATPase regulatory subunit 12 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPN5A PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein CCACVL1_14705 [Corchorus capsularis]"]
["c48394.graph_c0","[R]","General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain;; WD domain, G-beta repeat","WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1","S","Function unknown","PREDICTED: WD repeat-containing protein 26 [Gossypium arboreum]"]
["c20047.graph_c0","--","--","--","--","--","--","Remorin, C-terminal region","Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA32617 [Gossypium barbadense]"]
["c9085.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|6.11168e-15|tcc:TCM_004939|K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] | (RefSeq) P-glycoprotein 21","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","ABC transporter B family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCB4 PE=1 SV=1","V","Defense mechanisms","ABC transporter B family member 21-like isoform X1 [Durio zibethinus] "]
["c27519.graph_c0","--","--","--","--","--","--","Phosphate-induced protein 1 conserved region","Protein EXORDIUM-like 2 OS=Arabidopsis thaliana OX=3702 GN=EXL2 PE=2 SV=1","S","Function unknown","EXORDIUM like 2 [Theobroma cacao]"]
["c37145.graph_c1","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: cell (GO:0005623);; Molecular Function: electron carrier activity (GO:0009055);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Biological Process: oxidation-reduction process (GO:0055114);; ","K07390|3.07612e-19|gra:105778191|K07390 monothiol glutaredoxin | (RefSeq) monothiol glutaredoxin-S15, mitochondrial","[O]","Posttranslational modification, protein turnover, chaperones ","--","Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GRXS15 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Gossypium raimondii] "]
["c69122.graph_c0","--","--","--","--","--","--","Rapid ALkalinization Factor (RALF)","--","--","--","hypothetical protein GOBAR_DD32125 [Gossypium barbadense]"]
["c42186.graph_c2","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF707)","--","S","Function unknown","uncharacterized protein LOC111298217 isoform X3 [Durio zibethinus]"]
["c45220.graph_c1","[G]","Carbohydrate transport and metabolism ","Molecular Function: beta-N-acetylhexosaminidase activity (GO:0004563);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; ","K12373|0|gra:105804499|K12373 hexosaminidase [EC:3.2.1.52] | (RefSeq) beta-hexosaminidase 2","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolase family 20, catalytic domain;; beta-acetyl hexosaminidase like","Beta-hexosaminidase 2 OS=Arabidopsis thaliana OX=3702 GN=HEXO2 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_AA11128 [Gossypium barbadense]"]
["c53442.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Molecular Function: transferase activity (GO:0016740);; ","K00914|1.49195e-20|cam:101495936|K00914 phosphatidylinositol 3-kinase [EC:2.7.1.137] | (RefSeq) phosphatidylinositol 3-kinase, root isoform","[TU]","--","--","Phosphatidylinositol 3-kinase, root isoform OS=Glycine max OX=3847 PE=2 SV=1","BDLTU","--","PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X2 [Ziziphus jujuba] "]
["c16537.graph_c1","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: metal ion binding (GO:0046872);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","RING-like zinc finger;; Ring finger domain;; Zinc finger, C3HC4 type (RING finger)","E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","Zinc finger, RING-type [Corchorus olitorius]"]
["c90984.graph_c0","--","--","--","--","[S]","Function unknown ","--","--","S","Function unknown","--"]
["c37308.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: mRNA splicing, via spliceosome (GO:0000398);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: U2-type spliceosomal complex (GO:0005684);; Cellular Component: U2 snRNP (GO:0005686);; Cellular Component: U12-type spliceosomal complex (GO:0005689);; Cellular Component: precatalytic spliceosome (GO:0071011);; Cellular Component: catalytic step 2 spliceosome (GO:0071013);; ","K12833|6.15453e-81|gra:105783917|K12833 pre-mRNA branch site protein p14 | (RefSeq) splicing factor 3B subunit 6-like protein","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g12190 PE=2 SV=1","A","RNA processing and modification","PREDICTED: splicing factor 3B subunit 6-like protein [Gossypium raimondii] "]
["c93663.graph_c0","[R]","General function prediction only ","Molecular Function: NADH dehydrogenase activity (GO:0003954);; Biological Process: rhamnose catabolic process (GO:0019301);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Enoyl-(Acyl carrier protein) reductase","--","S","Function unknown","hypothetical protein AURANDRAFT_20091 [Aureococcus anophagefferens] "]
["c87093.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: fatty-acyl-CoA binding (GO:0000062);; ","--","[I]","Lipid transport and metabolism ","Acyl CoA binding protein","Acyl-CoA-binding protein OS=Gossypium hirsutum OX=3635 PE=3 SV=1","I","Lipid transport and metabolism","long-chain fatty acid transporter [Naematelia encephala]"]
["c52851.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","--","MAP3K epsilon protein kinase 1 OS=Brassica napus OX=3708 GN=M3KE1 PE=1 SV=1","T","Signal transduction mechanisms","Serine/threonine-protein kinase sepA [Gossypium arboreum]"]
["c38203.graph_c0","--","--","--","--","--","--","TCP family transcription factor","Transcription factor TCP9 OS=Arabidopsis thaliana OX=3702 GN=TCP9 PE=1 SV=1","K","Transcription","PREDICTED: transcription factor TCP19-like [Gossypium hirsutum]"]
["c20101.graph_c0","--","--","Molecular Function: iron ion binding (GO:0005506);; Cellular Component: endoplasmic reticulum (GO:0005783);; Biological Process: gibberellin biosynthetic process (GO:0009686);; Cellular Component: chloroplast outer membrane (GO:0009707);; Biological Process: ent-kaurene oxidation to kaurenoic acid (GO:0010241);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: heme binding (GO:0020037);; Molecular Function: ent-kaurene oxidase activity (GO:0052615);; Molecular Function: ent-kaur-16-en-19-ol oxidase activity (GO:0052616);; Molecular Function: ent-kaur-16-en-19-al oxidase activity (GO:0052617);; ","K04122|1.14001e-11|gra:105774074|K04122 ent-kaurene oxidase [EC:1.14.13.78] | (RefSeq) ent-kaurene oxidase, chloroplastic-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","Ent-kaurene oxidase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=KO PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: ent-kaurene oxidase, chloroplastic-like [Gossypium hirsutum]"]
["c7720.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105797877 [Gossypium raimondii] "]
["c36129.graph_c2","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein BYPASS1-related","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18592631 [Theobroma cacao]"]
["c40221.graph_c3","--","--","Cellular Component: 1,3-beta-D-glucan synthase complex (GO:0000148);; Molecular Function: 1,3-beta-D-glucan synthase activity (GO:0003843);; Biological Process: (1->3)-beta-D-glucan biosynthetic process (GO:0006075);; Cellular Component: integral component of membrane (GO:0016021);; ","K11000|9.92626e-42|gra:105777364|K11000 callose synthase [EC:2.4.1.-] | (RefSeq) callose synthase 7-like","[M]","Cell wall/membrane/envelope biogenesis ","--","Callose synthase 7 OS=Arabidopsis thaliana OX=3702 GN=CALS7 PE=3 SV=3","S","Function unknown","PREDICTED: callose synthase 7-like isoform X1 [Gossypium hirsutum]"]
["c52343.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA38558 [Gossypium barbadense]"]
["c74560.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K03097|2.38033e-76|mus:103997348|K03097 casein kinase II subunit alpha [EC:2.7.11.1] | (RefSeq) casein kinase II subunit alpha-2-like","[TDK]","--","Protein kinase domain;; Protein tyrosine kinase;; Phosphotransferase enzyme family","Casein kinase II subunit alpha OS=Zea mays OX=4577 GN=ACK2 PE=1 SV=1","T","Signal transduction mechanisms","GPCR kinase [Parasponia andersonii]"]
["c38667.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K17086|4.43249e-152|gra:105782211|K17086 transmembrane 9 superfamily member 2/4 | (RefSeq) transmembrane 9 superfamily member 10-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Endomembrane protein 70","Transmembrane 9 superfamily member 10 OS=Arabidopsis thaliana OX=3702 GN=TMN10 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA22501 [Gossypium barbadense]"]
["c44888.graph_c1","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Plant organelle RNA recognition domain;; AP2 domain","Protein WHAT&apos;S THIS FACTOR 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1","S","Function unknown","PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Gossypium hirsutum] "]
["c49338.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108483177 [Gossypium arboreum] "]
["c51971.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111302566 [Durio zibethinus]"]
["c41369.graph_c0","--","--","--","--","--","--","--","Multiple organellar RNA editing factor 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF1 PE=1 SV=1","S","Function unknown","multiple organellar RNA editing factor 1, mitochondrial-like [Durio zibethinus]"]
["c43228.graph_c1","[K]","Transcription ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: transcription, DNA-templated (GO:0006351);; Molecular Function: protein dimerization activity (GO:0046983);; ","K03008|1.39318e-65|gra:105766054|K03008 DNA-directed RNA polymerase II subunit RPB11 | (RefSeq) DNA-directed RNA polymerases II, IV and V subunit 11","[K]","Transcription ","RNA polymerase Rpb3/Rpb11 dimerisation domain;; RNA polymerase Rpb3/Rpb11 dimerisation domain","DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD17039 [Gossypium barbadense]"]
["c29473.graph_c0","--","--","Molecular Function: transporter activity (GO:0005215);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: vesicle-mediated transport (GO:0016192);; ","K07937|2.7795e-16|mus:103996992|K07937 ADP-ribosylation factor 1 | (RefSeq) ADP-ribosylation factor 1","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0813400 PE=2 SV=3","S","Function unknown","hypothetical protein GOBAR_AA09584 [Gossypium barbadense]"]
["c83039.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","--","[A]","RNA processing and modification ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=2 SV=1","S","Function unknown","RNA-binding domain-containing protein [Piromyces finnis]"]
["c77261.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; ","--","[R]","General function prediction only ","Sugar (and other) transporter","Sugar transport protein 6 OS=Arabidopsis thaliana OX=3702 GN=STP6 PE=1 SV=1","G","Carbohydrate transport and metabolism","Sugar/inositol transporter [Macleaya cordata]"]
["c40335.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Biological Process: protein folding (GO:0006457);; ","K01802|1.60967e-40|pper:PRUPE_ppa012332mg|K01802 peptidylprolyl isomerase [EC:5.2.1.8] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD","Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus OX=4058 GN=PCKR1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","peptidyl-prolyl cis-trans isomerase 1 [Prunus avium]"]
["c38004.graph_c1","--","--","Cellular Component: spindle pole (GO:0000922);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule organizing center (GO:0005815);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule nucleation (GO:0007020);; Molecular Function: gamma-tubulin binding (GO:0043015);; ","K16572|0|gra:105776324|K16572 gamma-tubulin complex component 5 | (RefSeq) uncharacterized LOC105776324","[S]","Function unknown ","Spc97 / Spc98 family","Gamma-tubulin complex component 3 OS=Arabidopsis thaliana OX=3702 GN=GCP3 PE=1 SV=1","S","Function unknown","PREDICTED: gamma-tubulin complex component 5-like [Gossypium hirsutum]"]
["c35388.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytosol (GO:0005829);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02993|1.76037e-54|cre:CHLREDRAFT_179706|K02993 small subunit ribosomal protein S7e | (RefSeq) RPS7; ribosomal protein S7, component of cytosolic 80S ribosome and 40S small subunit","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S7e","40S ribosomal protein S7 OS=Avicennia marina OX=82927 GN=RPS7 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","ribosomal protein S7e [Rhizopus microsporus ATCC 52813] "]
["c29226.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108469096 [Gossypium arboreum]"]
["c34740.graph_c0","--","--","Molecular Function: electron carrier activity (GO:0009055);; ","--","--","--","Plastocyanin-like domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105781949 [Gossypium raimondii] "]
["c45405.graph_c0","--","--","Molecular Function: nucleotide-sugar transmembrane transporter activity (GO:0005338);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: nucleotide-sugar transport (GO:0015780);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: nucleotide transmembrane transport (GO:1901679);; ","--","[GE]","--","--","UDP-rhamnose/UDP-galactose transporter 5 OS=Arabidopsis thaliana OX=3702 GN=URGT5 PE=1 SV=1","S","Function unknown","UDP-rhamnose/UDP-galactose transporter 5 isoform X3 [Durio zibethinus]"]
["c33427.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: arylformamidase activity (GO:0004061);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: tryptophan catabolic process to kynurenine (GO:0019441);; ","--","--","--","Putative cyclase;; Putative cyclase","--","S","Function unknown","uncharacterized protein LOC110419967 [Herrania umbratica]"]
["c92538.graph_c0","--","--","--","--","[K]","Transcription ","bZIP Maf transcription factor","--","K","Transcription","--"]
["c7466.graph_c0","--","--","Cellular Component: ribosome (GO:0005840);; Biological Process: ribosome biogenesis (GO:0042254);; ","K02936|2.25777e-35|ppp:PHYPADRAFT_190571|K02936 large subunit ribosomal protein L7Ae | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","--","60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","60S ribosomal protein L7a [Zea mays]"]
["c40549.graph_c0","[T]","Signal transduction mechanisms ","Biological Process: microtubule bundle formation (GO:0001578);; Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: steroid binding (GO:0005496);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endosome (GO:0005768);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: skotomorphogenesis (GO:0009647);; Biological Process: detection of brassinosteroid stimulus (GO:0009729);; Biological Process: brassinosteroid mediated signaling pathway (GO:0009742);; Biological Process: positive regulation of flower development (GO:0009911);; Biological Process: response to UV-B (GO:0010224);; Biological Process: pollen exine formation (GO:0010584);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein homodimerization activity (GO:0042803);; Molecular Function: protein heterodimerization activity (GO:0046982);; Biological Process: leaf development (GO:0048366);; Biological Process: anther wall tapetum cell differentiation (GO:0048657);; Biological Process: negative regulation of cell death (GO:0060548);; Biological Process: regulation of seedling development (GO:1900140);; ","K13415|1.52025e-99|gra:105787882|K13415 protein brassinosteroid insensitive 1 [EC:2.7.10.1 2.7.11.1] | (RefSeq) protein BRASSINOSTEROID INSENSITIVE 1-like","--","--","Protein tyrosine kinase;; Protein kinase domain","Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum OX=4081 GN=CURL3 PE=1 SV=1","S","Function unknown","brassinosteroid insensitive 1, partial [Gossypium hirsutum]"]
["c46299.graph_c1","--","--","--","K12581|2.61776e-176|gra:105773890|K12581 CCR4-NOT transcription complex subunit 7/8 | (RefSeq) probable CCR4-associated factor 1 homolog 6","[A]","RNA processing and modification ","CAF1 family ribonuclease","Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2","K","Transcription","PREDICTED: probable CCR4-associated factor 1 homolog 6 [Gossypium raimondii] "]
["c52985.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107943211 [Gossypium hirsutum]"]
["c23915.graph_c3","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana OX=3702 GN=At4g36180 PE=1 SV=1","S","Function unknown","PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Theobroma cacao]"]
["c81939.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","--","--","A","RNA processing and modification","--"]
["c34038.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 71A1 OS=Persea americana OX=3435 GN=CYP71A1 PE=1 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein B456_011G060100 [Gossypium raimondii]"]
["c44949.graph_c0","--","--","Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxidation-reduction process (GO:0055114);; ","K10712|1.33209e-50|tcc:TCM_018396|K10712 cysteamine dioxygenase [EC:1.13.11.19] | (RefSeq) Uncharacterized protein isoform 1","[S]","Function unknown ","PCO_ADO;; PCO_ADO","Plant cysteine oxidase 2 OS=Arabidopsis thaliana OX=3702 GN=PCO2 PE=1 SV=1","S","Function unknown","plant cysteine oxidase 2 isoform X1 [Herrania umbratica]"]
["c93898.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: integral component of plasma membrane (GO:0005887);; Molecular Function: cation-transporting ATPase activity (GO:0019829);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: cation transmembrane transport (GO:0098655);; ","K01537|7.38609e-53|tcc:TCM_041938|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) Endoplasmic reticulum [ER]-type calcium ATPase isoform 1","[P]","Inorganic ion transport and metabolism ","E1-E2 ATPase","Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana OX=3702 GN=ECA1 PE=1 SV=2","P","Inorganic ion transport and metabolism","calcium-transporting ATPase 4, endoplasmic reticulum-type-like [Hevea brasiliensis]"]
["c33984.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","Floricaula / Leafy protein SAM domain","Floricaula/leafy homolog OS=Populus trichocarpa OX=3694 GN=FL PE=2 SV=2","K","Transcription","floricaula/leafy homolog [Durio zibethinus]"]
["c36067.graph_c1","[I]","Lipid transport and metabolism ","Molecular Function: hydrolase activity (GO:0016787);; ","K01054|6.61436e-58|gra:105803017|K01054 acylglycerol lipase [EC:3.1.1.23] | (RefSeq) caffeoylshikimate esterase","[I]","Lipid transport and metabolism ","Serine aminopeptidase, S33","Caffeoylshikimate esterase OS=Arabidopsis thaliana OX=3702 GN=CSE PE=1 SV=1","I","Lipid transport and metabolism","caffeoylshikimate esterase-like isoform X1 [Herrania umbratica]"]
["c51358.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","ZF-HD protein dimerisation region","Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZHD4 PE=1 SV=1","--","--","hypothetical protein GOBAR_DD15216 [Gossypium barbadense]"]
["c87615.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Gossypium hirsutum]"]
["c38105.graph_c0","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","--","--","Putative S-adenosyl-L-methionine-dependent methyltransferase","Probable methyltransferase PMT2 OS=Arabidopsis thaliana OX=3702 GN=At1g26850 PE=2 SV=2","S","Function unknown","PREDICTED: probable methyltransferase PMT2 [Gossypium hirsutum] "]
["c91741.graph_c0","--","--","Molecular Function: catalytic activity (GO:0003824);; ","K17732|4.48901e-24|crb:CARUB_v10000696mg|K17732 mitochondrial-processing peptidase subunit beta [EC:3.4.24.64] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Peptidase M16 inactive domain","Probable mitochondrial-processing peptidase subunit beta, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g02090 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: probable mitochondrial-processing peptidase subunit beta, mitochondrial isoform X1 [Camelina sativa]"]
["c21859.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA25747 [Gossypium barbadense]"]
["c90904.graph_c0","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","--","--","--","VirB8 protein","--","--","--","--"]
["c25424.graph_c0","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: pyruvate kinase activity (GO:0004743);; Biological Process: glycolytic process (GO:0006096);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: potassium ion binding (GO:0030955);; ","K00873|4.35328e-16|tcc:TCM_043508|K00873 pyruvate kinase [EC:2.7.1.40] | (RefSeq) Pyruvate kinase family protein isoform 1","[G]","Carbohydrate transport and metabolism ","--","Pyruvate kinase 1, cytosolic OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0148500 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein B456_011G233000 [Gossypium raimondii]"]
["c35925.graph_c0","[C]","Energy production and conversion ","Biological Process: tricarboxylic acid cycle (GO:0006099);; Molecular Function: phosphoenolpyruvate carboxylase activity (GO:0008964);; Biological Process: carbon fixation (GO:0015977);; ","K01595|1.36888e-68|gra:105763582|K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31] | (RefSeq) phosphoenolpyruvate carboxylase 1-like","--","--","Phosphoenolpyruvate carboxylase","Phosphoenolpyruvate carboxylase OS=Picea abies OX=3329 GN=PPC PE=2 SV=1","C","Energy production and conversion","phosphoenolpyruvate carboxylase, partial [Cucumis sativus]"]
["c46492.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Rab-GTPase-TBC domain","Cytochrome b5 isoform E OS=Arabidopsis thaliana OX=3702 GN=CYTB5-E PE=1 SV=2","S","Function unknown","GTPase-activating protein gyp7-like isoform X1 [Herrania umbratica]"]
["c53487.graph_c0","--","--","Molecular Function: glycogen (starch) synthase activity (GO:0004373);; Molecular Function: starch synthase activity (GO:0009011);; Cellular Component: amyloplast (GO:0009501);; Cellular Component: chloroplast (GO:0009507);; Biological Process: starch biosynthetic process (GO:0019252);; Molecular Function: alpha-1,4-glucan synthase activity (GO:0033201);; ","K13679|9.28787e-16|gmx:100170703|K13679 granule-bound starch synthase [EC:2.4.1.242] | (RefSeq) GBSSIa, GBSSI; granule bound starch synthase Ia","--","--","--","Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus OX=4151 GN=WAXY PE=2 SV=1","G","Carbohydrate transport and metabolism","Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]"]
["c21122.graph_c1","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase","Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein B456_012G064800 [Gossypium raimondii]"]
["c50641.graph_c0","--","--","Molecular Function: microtubule motor activity (GO:0003777);; Molecular Function: ATP binding (GO:0005524);; Biological Process: microtubule-based movement (GO:0007018);; Molecular Function: microtubule binding (GO:0008017);; ","K10406|1.60409e-14|gra:105763567|K10406 kinesin family member C2/C3 | (RefSeq) kinesin-like protein KIF3B","--","--","--","--","--","--","PREDICTED: kinesin-II 95 kDa subunit-like [Gossypium hirsutum]"]
["c88160.graph_c0","--","--","Cellular Component: ribosome (GO:0005840);; ","K02937|9.1388e-29|aip:107635178|K02937 large subunit ribosomal protein L7e | (RefSeq) 60S ribosomal protein L7-2-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L30p/L7e","60S ribosomal protein L7-4 OS=Arabidopsis thaliana OX=3702 GN=RPL7D PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c35847.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: histone binding (GO:0042393);; ","--","--","--","--","--","L","Replication, recombination and repair","chromatin structure-remodeling complex protein SYD-like isoform X3 [Durio zibethinus]"]
["c20911.graph_c0","--","--","Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[S]","Function unknown ","--","Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1","S","Function unknown","Methylcytosine dioxygenase TET2 [Gossypium arboreum]"]
["c49983.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18588881 [Theobroma cacao] "]
["c51301.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107933356 [Gossypium hirsutum]"]
["c86613.graph_c0","--","--","--","--","--","--","Sprouty protein (Spry)","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c72256.graph_c0","--","--","Molecular Function: iron ion binding (GO:0005506);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","--","Probable 2-oxoglutarate-dependent dioxygenase AOP1 OS=Arabidopsis thaliana OX=3702 GN=AOP1 PE=2 SV=1","S","Function unknown","Oxoglutarate/iron-dependent dioxygenase [Corchorus olitorius]"]
["c1251.graph_c1","--","--","--","--","--","--","--","--","T","Signal transduction mechanisms","--"]
["c58726.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Molecular Function: isomerase activity (GO:0016853);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105770401 isoform X1 [Gossypium raimondii] "]
["c36318.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1442)","--","S","Function unknown","hypothetical protein GOBAR_DD26201 [Gossypium barbadense]"]
["c50293.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K20359|2.02722e-31|gra:105788004|K20359 PRA1 family protein 1 | (RefSeq) PRA1 family protein F3","[U]","Intracellular trafficking, secretion, and vesicular transport ","PRA1 family protein","PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: PRA1 family protein F3-like [Gossypium hirsutum] "]
["c37554.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","K03260|2.35676e-27|gra:105790302|K03260 translation initiation factor 4G | (RefSeq) eukaryotic translation initiation factor 4G-like","[J]","Translation, ribosomal structure and biogenesis ","--","Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana OX=3702 GN=EIF4G PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","MIF4G-like, type 3 [Corchorus olitorius]"]
["c89843.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: hydrolase activity (GO:0016787);; ","--","[I]","Lipid transport and metabolism ","--","--","S","Function unknown","PREDICTED: bifunctional epoxide hydrolase 2-like [Fragaria vesca subsp. vesca]"]
["c40652.graph_c0","[PR]","Inorganic ion transport and metabolism ;; General function prediction only ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","ABC transporter I family member 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCI11 PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein GOBAR_AA20962 [Gossypium barbadense]"]
["c82218.graph_c0","--","--","Molecular Function: peptidase activity (GO:0008233);; Cellular Component: cytoplasmic part (GO:0044444);; ","K01363|9.90939e-20|smo:SELMODRAFT_143272|K01363 cathepsin B [EC:3.4.22.1] | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Peptidase family C1 propeptide;; Papain family cysteine protease","Cathepsin B-like protease 3 OS=Arabidopsis thaliana OX=3702 GN=CATHB3 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c47849.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter;; ABC-transporter extracellular N-terminal;; ABC transporter;; ABC transporter;; Plant PDR ABC transporter associated","ABC transporter G family member 39 OS=Arabidopsis thaliana OX=3702 GN=ABCG39 PE=3 SV=1","V","Defense mechanisms","PREDICTED: ABC transporter G family member 39-like isoform X2 [Gossypium hirsutum]"]
["c70315.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana OX=3702 GN=At1g12460 PE=2 SV=1","T","Signal transduction mechanisms","Leucine-rich repeat protein kinase family protein isoform 4 [Theobroma cacao]"]
["c86592.graph_c0","--","--","--","--","--","--","C1q domain","--","S","Function unknown","--"]
["c49799.graph_c0","[V]","Defense mechanisms ","--","K05658|0|gra:105798228|K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] | (RefSeq) ABC transporter B family member 19","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter transmembrane region;; ABC transporter;; ABC transporter;; ABC transporter transmembrane region","ABC transporter B family member 19 OS=Arabidopsis thaliana OX=3702 GN=ABCB19 PE=1 SV=1","V","Defense mechanisms","PREDICTED: ABC transporter B family member 19 isoform X1 [Gossypium raimondii] "]
["c21780.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: cytosol (GO:0005829);; ","--","--","--","EF hand;; EF-hand domain pair;; EF hand;; EF-hand domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108462751 [Gossypium arboreum]"]
["c42677.graph_c0","--","--","--","--","--","--","Cotton fibre expressed protein","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105768083 [Gossypium raimondii] "]
["c38100.graph_c0","--","--","Biological Process: DNA repair (GO:0006281);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[DR]","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD23835 [Gossypium barbadense]"]
["c49760.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: intracellular protein transport (GO:0006886);; Molecular Function: protein transporter activity (GO:0008565);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: clathrin adaptor complex (GO:0030131);; ","K12391|0|gra:105785548|K12391 AP-1 complex subunit gamma-1 | (RefSeq) AP-1 complex subunit gamma-2-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Adaptin N terminal region;; Adaptin C-terminal domain","AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana OX=3702 GN=At1g60070 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: AP-1 complex subunit gamma-2-like isoform X1 [Gossypium hirsutum] "]
["c39093.graph_c0","--","--","--","--","[R]","General function prediction only ","C2 domain","Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG3 PE=1 SV=1","S","Function unknown","PREDICTED: elicitor-responsive protein 3 isoform X2 [Gossypium raimondii]"]
["c47136.graph_c0","--","--","Cellular Component: nucleosome (GO:0000786);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleosome assembly (GO:0006334);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K11254|4.90355e-45|zma:103634846|K11254 histone H4 | (RefSeq) histone H4","[B]","Chromatin structure and dynamics ","Centromere kinetochore component CENP-T histone fold;; TATA box binding protein associated factor (TAF)","Histone H4 OS=Glycine max OX=3847 PE=3 SV=1","B","Chromatin structure and dynamics","histone H4 [Zea mays]"]
["c56284.graph_c0","--","--","Biological Process: phloem or xylem histogenesis (GO:0010087);; Biological Process: leaf vascular tissue pattern formation (GO:0010305);; Biological Process: cotyledon vascular tissue pattern formation (GO:0010588);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","Putative GPI inositol-deacylase C [Gossypium arboreum]"]
["c91257.graph_c0","--","--","Cellular Component: vacuolar proton-transporting V-type ATPase, V1 domain (GO:0000221);; Cellular Component: plant-type vacuole (GO:0000325);; Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast (GO:0009507);; Biological Process: ATP hydrolysis coupled proton transport (GO:0015991);; Molecular Function: heme binding (GO:0020037);; Molecular Function: proton-transporting ATPase activity, rotational mechanism (GO:0046961);; ","K02144|5.67161e-46|fve:101291381|K02144 V-type H+-transporting ATPase subunit H | (RefSeq) V-type proton ATPase subunit H","[C]","Energy production and conversion ","V-ATPase subunit H","V-type proton ATPase subunit H OS=Arabidopsis thaliana OX=3702 GN=VHA-H PE=1 SV=1","C","Energy production and conversion","PREDICTED: V-type proton ATPase subunit H [Fragaria vesca subsp. vesca]"]
["c41403.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: ATP binding (GO:0005524);; Molecular Function: ATP-dependent helicase activity (GO:0008026);; Cellular Component: integral component of membrane (GO:0016021);; ","K18995|0|gra:105786094|K18995 ATP-dependent RNA helicase DHX29 [EC:3.6.4.13] | (RefSeq) ATP-dependent RNA helicase DHX36","[A]","RNA processing and modification ","DEAD/DEAH box helicase;; Oligonucleotide/oligosaccharide-binding (OB)-fold;; Helicase associated domain (HA2)","DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g58060 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: DExH-box ATP-dependent RNA helicase DExH7, chloroplastic-like [Gossypium hirsutum]"]
["c24590.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Cellular Component: nuclear exosome (RNase complex) (GO:0000176);; Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: RNA processing (GO:0006396);; Molecular Function: 3'-5' exonuclease activity (GO:0008408);; Molecular Function: transferase activity (GO:0016740);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","K12591|9.3584e-16|tcc:TCM_025856|K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] | (RefSeq) Polynucleotidyl transferase, putative isoform 1","--","--","--","--","--","--","PREDICTED: protein RRP6-like 2 [Gossypium hirsutum]"]
["c17647.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: RNA metabolic process (GO:0016070);; Molecular Function: hydrolase activity (GO:0016787);; Biological Process: ribosome biogenesis (GO:0042254);; Cellular Component: intracellular part (GO:0044424);; ","K12823|1.37603e-22|pxb:103929301|K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 20-like","[A]","RNA processing and modification ","Helicase conserved C-terminal domain","DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2","L","Replication, recombination and repair","hypothetical protein G7K_1159-t2 [Saitoella complicata NRRL Y-17804]"]
["c40380.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: pectate lyase activity (GO:0030570);; Biological Process: pectin catabolic process (GO:0045490);; Molecular Function: metal ion binding (GO:0046872);; ","K01728|1.31506e-29|tcc:TCM_020399|K01728 pectate lyase [EC:4.2.2.2] | (RefSeq) Pectin lyase-like superfamily protein","--","--","--","Probable pectate lyase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g04680 PE=2 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein B456_006G219800 [Gossypium raimondii]"]
["c8048.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA01388 [Gossypium barbadense]"]
["c45217.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: cation transmembrane transporter activity (GO:0008324);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cation transmembrane transport (GO:0098655);; ","K14692|8.88765e-107|gra:105786179|K14692 solute carrier family 30 (zinc transporter), member 5/7 | (RefSeq) metal tolerance protein C2","[P]","Inorganic ion transport and metabolism ","Cation efflux family","Metal tolerance protein C2 OS=Arabidopsis thaliana OX=3702 GN=MTPC2 PE=2 SV=1","P","Inorganic ion transport and metabolism","metal tolerance protein C2-like isoform X3 [Durio zibethinus]"]
["c25585.graph_c0","--","--","--","K10727|2.84441e-27|gra:105767656|K10727 chromatin licensing and DNA replication factor 1 | (RefSeq) CDT1-like protein a, chloroplastic","[L]","Replication, recombination and repair ","--","CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1 SV=1","L","Replication, recombination and repair","PREDICTED: CDT1-like protein a, chloroplastic [Gossypium hirsutum]"]
["c45384.graph_c0","--","--","Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00454|0|gra:105777156|K00454 lipoxygenase [EC:1.13.11.12] | (RefSeq) linoleate 13S-lipoxygenase 3-1, chloroplastic-like","--","--","Lipoxygenase;; PLAT/LH2 domain","Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX3.1 PE=1 SV=1","S","Function unknown","PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Gossypium arboreum] "]
["c41019.graph_c0","[F]","Nucleotide transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[F]","Nucleotide transport and metabolism ","--","Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT20 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: nudix hydrolase 20, chloroplastic isoform X3 [Theobroma cacao]"]
["c82232.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c33403.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA25060 [Gossypium barbadense]"]
["c43765.graph_c0","[S]","Function unknown ","--","K20241|0|gra:105799854|K20241 WD repeat-containing protein 44 | (RefSeq) WD repeat-containing protein 44","[S]","Function unknown ","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain;; Nucleoporin Nup120/160","COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1","S","Function unknown","PREDICTED: WD repeat-containing protein 44-like [Gossypium hirsutum]"]
["c52092.graph_c0","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: cysteine-type peptidase activity (GO:0008234);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Cathepsin propeptide inhibitor domain (I29)","Fruit bromelain OS=Ananas comosus OX=4615 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_009G363800 [Gossypium raimondii]"]
["c54673.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","--","[R]","General function prediction only ","--","--","S","Function unknown","uncharacterized protein LOC111302799 isoform X1 [Durio zibethinus]"]
["c36036.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108470356 [Gossypium arboreum] "]
["c43781.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; Biological Process: phosphatidylinositol dephosphorylation (GO:0046856);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Endonuclease/Exonuclease/phosphatase family","Type I inositol polyphosphate 5-phosphatase 8 OS=Arabidopsis thaliana OX=3702 GN=IP5P8 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: type I inositol polyphosphate 5-phosphatase 8-like isoform X1 [Gossypium hirsutum]"]
["c46785.graph_c1","[T]","Signal transduction mechanisms ","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: MAP kinase activity (GO:0004707);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: intracellular (GO:0005622);; ","K20538|2.95602e-158|gra:105765660|K20538 mitogen-activated protein kinase 8 [EC:2.7.11.24] | (RefSeq) mitogen-activated protein kinase 9-like","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; Lipopolysaccharide kinase (Kdo/WaaP) family;; Haspin like kinase domain;; Protein kinase domain","Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana OX=3702 GN=MPK9 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA20944 [Gossypium barbadense]"]
["c47792.graph_c3","--","--","--","--","--","--","PLATZ transcription factor","--","S","Function unknown","uncharacterized protein LOC106774881 [Vigna radiata var. radiata]"]
["c44965.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Carbohydrate-binding protein of the ER;; Protein tyrosine kinase;; Di-glucose binding within endoplasmic reticulum;; Protein kinase domain","Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana OX=3702 GN=ANX1 PE=2 SV=1","T","Signal transduction mechanisms","Malectin/receptor-like protein kinase family protein [Theobroma cacao]"]
["c62931.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: sucrose biosynthetic process (GO:0005986);; Cellular Component: plasmodesma (GO:0009506);; Molecular Function: sucrose synthase activity (GO:0016157);; Molecular Function: sucrose-phosphate synthase activity (GO:0046524);; Biological Process: nectar secretion (GO:0071836);; ","K00696|1.07606e-21|gra:105782791|K00696 sucrose-phosphate synthase [EC:2.4.1.14] | (RefSeq) probable sucrose-phosphate synthase 1","[M]","Cell wall/membrane/envelope biogenesis ","--","Probable sucrose-phosphate synthase OS=Beta vulgaris OX=161934 GN=SPS PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","PREDICTED: probable sucrose-phosphate synthase [Malus domestica]"]
["c39434.graph_c0","--","--","Molecular Function: translation elongation factor activity (GO:0003746);; Biological Process: translational elongation (GO:0006414);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105768625 [Gossypium raimondii] "]
["c42280.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: large ribosomal subunit (GO:0015934);; ","--","--","--","Ribosomal protein L1p/L10e family","50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL1 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","uncharacterized protein LOC111316791 isoform X2 [Durio zibethinus]"]
["c13044.graph_c0","--","--","Molecular Function: ARF guanyl-nucleotide exchange factor activity (GO:0005086);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: retrograde vesicle-mediated transport, Golgi to ER (GO:0006890);; Biological Process: endocytosis (GO:0006897);; Biological Process: regulation of ARF protein signal transduction (GO:0032012);; Biological Process: positive regulation of GTPase activity (GO:0043547);; Biological Process: ER body organization (GO:0080119);; ","K18443|2.41866e-123|tcc:TCM_018657|K18443 golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 | (RefSeq) GNOM-like 1","[U]","Intracellular trafficking, secretion, and vesicular transport ","Guanine nucleotide exchange factor in Golgi transport N-terminal","ARF guanine-nucleotide exchange factor GNL1 OS=Arabidopsis thaliana OX=3702 GN=GNL1 PE=3 SV=1","S","Function unknown","GNOM-like 1 [Theobroma cacao]"]
["c46795.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","--","K15501|0|gra:105782625|K15501 serine/threonine-protein phosphatase 6 regulatory subunit 3 | (RefSeq) serine/threonine-protein phosphatase 6 regulatory subunit 3-like","[D]","Cell cycle control, cell division, chromosome partitioning ","SIT4 phosphatase-associated protein;; Telomere recombination","--","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 [Gossypium raimondii] "]
["c73124.graph_c0","--","--","--","--","[R]","General function prediction only ","Tissue inhibitor of metalloproteinase","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c24385.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105804051 [Gossypium raimondii]"]
["c16902.graph_c0","--","--","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: proteolysis (GO:0006508);; ","K16296|9.00592e-29|gra:105784653|K16296 serine carboxypeptidase-like clade I [EC:3.4.16.-] | (RefSeq) serine carboxypeptidase-like 20","[OE]","--","Serine carboxypeptidase","Serine carboxypeptidase-like 21 OS=Arabidopsis thaliana OX=3702 GN=SCPL21 PE=2 SV=2","E","Amino acid transport and metabolism","PREDICTED: serine carboxypeptidase-like 20 isoform X1 [Gossypium raimondii]"]
["c48274.graph_c0","[T]","Signal transduction mechanisms ","--","--","[P]","Inorganic ion transport and metabolism ","Sodium/hydrogen exchanger family","Cation/H(+) antiporter 18 OS=Arabidopsis thaliana OX=3702 GN=CHX18 PE=2 SV=1","P","Inorganic ion transport and metabolism","Cation/H+ exchanger [Corchorus olitorius]"]
["c30428.graph_c0","--","--","Biological Process: cell cycle (GO:0007049);; Molecular Function: cyclin-dependent protein serine/threonine kinase regulator activity (GO:0016538);; Biological Process: regulation of protein kinase activity (GO:0045859);; Biological Process: cell division (GO:0051301);; ","K02219|1.1838e-18|bvg:104903574|K02219 cyclin-dependent kinase regulatory subunit CKS1 | (RefSeq) cyclin-dependent kinases regulatory subunit 1","[D]","Cell cycle control, cell division, chromosome partitioning ","--","Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Beta vulgaris subsp. vulgaris] "]
["c56441.graph_c0","--","--","--","--","--","--","--","Purple acid phosphatase 2 OS=Ipomoea batatas OX=4120 GN=PAP2 PE=1 SV=1","--","--","PREDICTED: purple acid phosphatase-like [Malus domestica]"]
["c41493.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: viral nucleocapsid (GO:0019013);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","K11294|1.26409e-130|gra:105768054|K11294 nucleolin | (RefSeq) 29 kDa ribonucleoprotein A, chloroplastic-like","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1","S","Function unknown","PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Gossypium raimondii] "]
["c21295.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02908|2.62036e-53|ppp:PHYPADRAFT_207769|K02908 large subunit ribosomal protein L30e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family","60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Physcomitrella patens] "]
["c34071.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","--","--","--","homeobox protein HAT3.1-like isoform X2 [Durio zibethinus]"]
["c91877.graph_c0","--","--","Cellular Component: vacuole (GO:0005773);; ","K08059|2.27216e-35|sita:101781210|K08059 interferon, gamma-inducible protein 30 | (RefSeq) gamma-interferon-inducible lysosomal thiol reductase-like","[O]","Posttranslational modification, protein turnover, chaperones ","Gamma interferon inducible lysosomal thiol reductase (GILT)","--","S","Function unknown","gamma-interferon-inducible lysosomal thiol reductase-like [Aegilops tauschii subsp. tauschii]"]
["c18546.graph_c1","--","--","--","--","--","--","--","Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g30100 PE=2 SV=2","S","Function unknown","pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Herrania umbratica]"]
["c4961.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","--","[R]","General function prediction only ","--","Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD18476 [Gossypium barbadense]"]
["c59596.graph_c0","--","--","Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747);; ","K15397|1.16284e-16|gra:105767937|K15397 3-ketoacyl-CoA synthase [EC:2.3.1.199] | (RefSeq) KCS7; 3-ketoacyl-CoA synthase 11-like","--","--","--","3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana OX=3702 GN=KCS2 PE=2 SV=2","I","Lipid transport and metabolism","hypothetical protein GOBAR_AA18821 [Gossypium barbadense]"]
["c23992.graph_c0","--","--","--","--","--","--","--","--","--","--","Clavata3/esr-related 20, putative [Theobroma cacao]"]
["c95355.graph_c0","--","--","--","K10661|2.87323e-09|pop:POPTR_0001s31170g|K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] | (RefSeq) POPTRDRAFT_798034; zinc finger family protein","[A]","RNA processing and modification ","--","Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","putative E3 ubiquitin ligase SUD1 [Ananas comosus]"]
["c15697.graph_c0","--","--","--","--","[P]","Inorganic ion transport and metabolism ","--","CRC domain-containing protein TSO1 OS=Arabidopsis thaliana OX=3702 GN=TSO1 PE=1 SV=1","S","Function unknown","hypothetical protein B456_013G121300 [Gossypium raimondii]"]
["c63874.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Gossypium hirsutum]"]
["c40249.graph_c0","--","--","--","--","[TZ]","--","Formin Homology 2 Domain","Formin-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=FH20 PE=2 SV=3","S","Function unknown","PREDICTED: formin-like protein 20 isoform X7 [Gossypium arboreum]"]
["c18770.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; ","K16911|5.88896e-47|gra:105765591|K16911 ATP-dependent RNA helicase DDX21 [EC:3.6.4.13] | (RefSeq) DEAD-box ATP-dependent RNA helicase 7","[A]","RNA processing and modification ","--","DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea OX=3562 GN=RH7 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein GOBAR_AA26182 [Gossypium barbadense]"]
["c52213.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF740)","UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g09070 PE=1 SV=1","S","Function unknown","UPF0503 protein At3g09070, chloroplastic-like [Durio zibethinus]"]
["c39013.graph_c0","--","--","Cellular Component: microtubule (GO:0005874);; Molecular Function: microtubule binding (GO:0008017);; Cellular Component: katanin complex (GO:0008352);; Biological Process: microtubule severing (GO:0051013);; ","K18643|2.96423e-77|gra:105795008|K18643 katanin p80 WD40 repeat-containing subunit B1 | (RefSeq) uncharacterized LOC105795008","[D]","Cell cycle control, cell division, chromosome partitioning ","--","Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g23430 PE=2 SV=3","S","Function unknown","hypothetical protein B456_005G214400 [Gossypium raimondii]"]
["c13877.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","--","--","uncharacterized protein LOC111308033 [Durio zibethinus]"]
["c36750.graph_c0","--","--","--","--","--","--","--","Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1","S","Function unknown","hypothetical protein COLO4_15828 [Corchorus olitorius]"]
["c29499.graph_c0","[I]","Lipid transport and metabolism ","Cellular Component: chloroplast (GO:0009507);; Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765);; ","K11778|8.14136e-82|gra:105799166|K11778 ditrans,polycis-polyprenyl diphosphate synthase [EC:2.5.1.87] | (RefSeq) dehydrodolichyl diphosphate synthase 2","[I]","Lipid transport and metabolism ","Putative undecaprenyl diphosphate synthase","Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana OX=3702 GN=At5g58770 PE=2 SV=2","I","Lipid transport and metabolism","hypothetical protein GOBAR_DD19286 [Gossypium barbadense]"]
["c81822.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107941939 [Gossypium hirsutum]"]
["c30292.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","K20667|2.43862e-173|gra:105776509|K20667 beta-amyrin 28-monooxygenase [EC:1.14.13.201] | (RefSeq) beta-amyrin 28-oxidase-like","[QI]","--","Cytochrome P450;; Cytochrome P450","Beta-amyrin 28-oxidase OS=Panax ginseng OX=4054 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: beta-amyrin 28-oxidase-like [Gossypium hirsutum]"]
["c89672.graph_c0","--","--","Molecular Function: nutrient reservoir activity (GO:0045735);; ","--","--","--","High molecular weight glutenin subunit","Glutenin, high molecular weight subunit DY10 OS=Triticum aestivum OX=4565 GN=GLU-D1-2B PE=3 SV=1","--","--","HMW glutenin, partial [Triticum aestivum]"]
["c49363.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","K11446|0|gra:105776240|K11446 histone demethylase JARID1 [EC:1.14.11.-] | (RefSeq) lysine-specific demethylase JMJ18-like","[R]","General function prediction only ","JmjC domain, hydroxylase;; F/Y rich C-terminus;; jmjN domain;; C5HC2 zinc finger;; F/Y-rich N-terminus","Lysine-specific demethylase JMJ18 OS=Arabidopsis thaliana OX=3702 GN=JMJ18 PE=2 SV=1","S","Function unknown","PREDICTED: lysine-specific demethylase JMJ18-like isoform X1 [Gossypium raimondii] "]
["c45812.graph_c0","--","--","--","--","--","--","Staygreen protein","Protein STAY-GREEN 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SGR2 PE=2 SV=1","S","Function unknown","Staygreen domain-containing protein [Cephalotus follicularis]"]
["c55571.graph_c0","--","--","Biological Process: MAPK cascade (GO:0000165);; Molecular Function: MAP kinase activity (GO:0004707);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: intracellular (GO:0005622);; ","K20538|3.34179e-33|gra:105765660|K20538 mitogen-activated protein kinase 8 [EC:2.7.11.24] | (RefSeq) mitogen-activated protein kinase 9-like","[T]","Signal transduction mechanisms ","--","Mitogen-activated protein kinase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=MPK12 PE=1 SV=2","T","Signal transduction mechanisms","Mitogen-activated protein kinase 9 [Gossypium arboreum]"]
["c37402.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Carbohydrate-binding protein of the ER;; Protein kinase domain;; Di-glucose binding within endoplasmic reticulum","Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana OX=3702 GN=At5g39000 PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: receptor-like protein kinase FERONIA [Gossypium raimondii] "]
["c43557.graph_c0","[G]","Carbohydrate transport and metabolism ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; ","--","[R]","General function prediction only ","Sugar (and other) transporter","Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MSSP2 PE=1 SV=2","G","Carbohydrate transport and metabolism","hypothetical protein B456_013G064200 [Gossypium raimondii]"]
["c68689.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Male gamete fusion factor","Protein HAPLESS 2 OS=Arabidopsis thaliana OX=3702 GN=HAP2 PE=2 SV=1","S","Function unknown","hypothetical protein B456_007G022400 [Gossypium raimondii]"]
["c49122.graph_c1","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana OX=3702 GN=ALE2 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: receptor-like serine/threonine-protein kinase ALE2 [Gossypium arboreum]"]
["c41223.graph_c0","--","--","Molecular Function: DNA primase activity (GO:0003896);; Biological Process: DNA replication, synthesis of RNA primer (GO:0006269);; ","--","--","--","Herpesviridae UL52/UL70 DNA primase","--","S","Function unknown","hypothetical protein GOBAR_DD20081 [Gossypium barbadense]"]
["c38313.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: voltage-gated chloride channel activity (GO:0005247);; Biological Process: chloride transport (GO:0006821);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: regulation of anion transmembrane transport (GO:1903959);; ","K05016|5.19756e-144|gra:105772747|K05016 chloride channel 7 | (RefSeq) putative chloride channel-like protein CLC-g","[P]","Inorganic ion transport and metabolism ","Voltage gated chloride channel","Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana OX=3702 GN=CLC-G PE=1 SV=2","P","Inorganic ion transport and metabolism","PREDICTED: putative chloride channel-like protein CLC-g [Gossypium hirsutum] "]
["c45900.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: glutathione transferase activity (GO:0004364);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: metabolic process (GO:0008152);; ","K00799|7.88094e-136|gra:105786454|K00799 glutathione S-transferase [EC:2.5.1.18] | (RefSeq) glutathione S-transferase L3-like","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, C-terminal domain","Glutathione S-transferase L3 OS=Arabidopsis thaliana OX=3702 GN=GSTL3 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_002G252300 [Gossypium raimondii]"]
["c34542.graph_c1","[GI]","Carbohydrate transport and metabolism ;; Lipid transport and metabolism ","Molecular Function: enzyme inhibitor activity (GO:0004857);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin catabolic process (GO:0045490);; ","--","--","--","Pectinesterase","Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana OX=3702 GN=PME51 PE=2 SV=1","G","Carbohydrate transport and metabolism","putative pectinesterase/pectinesterase inhibitor 51 -like protein [Gossypium arboreum]"]
["c41146.graph_c0","--","--","--","--","--","--","--","--","K","Transcription","hypothetical protein GOBAR_AA06502 [Gossypium barbadense]"]
["c77132.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105788615 [Gossypium raimondii]"]
["c58744.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c64037.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: secondary active sulfate transmembrane transporter activity (GO:0008271);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sulfate transmembrane transport (GO:1902358);; ","K17469|4.63759e-62|gra:105770786|K17469 sulfate transporter 2, low-affinity | (RefSeq) low affinity sulfate transporter 3","[P]","Inorganic ion transport and metabolism ","Sulfate permease family","Low affinity sulfate transporter 3 OS=Stylosanthes hamata OX=37660 GN=ST3 PE=2 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: low affinity sulfate transporter 3-like [Gossypium hirsutum]"]
["c49254.graph_c0","[R]","General function prediction only ","--","--","--","--","Carbon-nitrogen hydrolase","Nitrilase-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NLP2 PE=2 SV=1","S","Function unknown","PREDICTED: interaptin-like [Gossypium raimondii] "]
["c29746.graph_c1","[R]","General function prediction only ","Cellular Component: cytoplasm (GO:0005737);; Biological Process: lipid metabolic process (GO:0006629);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[R]","General function prediction only ","Protein of unknown function (DUF1295);; Phospholipid methyltransferase","--","S","Function unknown","hypothetical protein GOBAR_DD14400 [Gossypium barbadense]"]
["c91265.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","S","Function unknown","hypothetical protein K445DRAFT_316452 [Daldinia sp. EC12]"]
["c41265.graph_c0","--","--","Cellular Component: Golgi membrane (GO:0000139);; Molecular Function: sugar:proton symporter activity (GO:0005351);; Biological Process: carbohydrate transport (GO:0008643);; Biological Process: proton transport (GO:0015992);; Cellular Component: integral component of membrane (GO:0016021);; ","K15272|3.97607e-68|gra:105802277|K15272 solute carrier family 35 (UDP-sugar transporter), member A1/2/3 | (RefSeq) CMP-sialic acid transporter 5-like","[G]","Carbohydrate transport and metabolism ","Nucleotide-sugar transporter;; Nucleotide-sugar transporter","CMP-sialic acid transporter 5 OS=Arabidopsis thaliana OX=3702 GN=At5g65000 PE=2 SV=1","EG","--","hypothetical protein B456_007G060800 [Gossypium raimondii]"]
["c18569.graph_c0","--","--","--","K07562|2.71941e-45|gra:105798257|K07562 nonsense-mediated mRNA decay protein 3 | (RefSeq) 60S ribosomal export protein NMD3-like","[J]","Translation, ribosomal structure and biogenesis ","--","--","J","Translation, ribosomal structure and biogenesis","60S ribosomal export protein NMD3 [Herrania umbratica] "]
["c34040.graph_c0","[DZ]","Cell cycle control, cell division, chromosome partitioning ;; Cytoskeleton ","Molecular Function: ligase activity (GO:0016874);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","Regulator of chromosome condensation (RCC1) repeat;; Regulator of chromosome condensation (RCC1) repeat;; Transcription factor regulating root and shoot growth via Pin3;; FYVE zinc finger;; Pleckstrin homology domain;; Transcription factor BRX N-terminal domain","PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1","DZ","--","PREDICTED: uncharacterized protein LOC107912868 isoform X4 [Gossypium hirsutum]"]
["c37994.graph_c0","--","--","Molecular Function: protein disulfide isomerase activity (GO:0003756);; Biological Process: protein folding (GO:0006457);; Cellular Component: plastid chromosome (GO:0009508);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: heat shock protein binding (GO:0031072);; Molecular Function: unfolded protein binding (GO:0051082);; ","--","--","--","--","Protein disulfide isomerase pTAC5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC5 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107897756 [Gossypium hirsutum]"]
["c59740.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","[R]","General function prediction only ","Ankyrin repeats (many copies);; Ankyrin repeats (3 copies);; Ankyrin repeat;; Ankyrin repeat","--","S","Function unknown","PREDICTED: ankyrin repeat-containing protein At2g01680-like isoform X2 [Gossypium hirsutum]"]
["c43849.graph_c0","--","--","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","[S]","Function unknown ","Armadillo/beta-catenin-like repeat;; U-box domain;; U-box domain","U-box domain-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=PUB9 PE=1 SV=1","S","Function unknown","PREDICTED: U-box domain-containing protein 9-like [Gossypium hirsutum]"]
["c34846.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111317666 [Durio zibethinus]"]
["c52039.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1","K","Transcription","PREDICTED: protein RADIALIS-like 1 [Gossypium raimondii] "]
["c48848.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","--","Homeobox protein LUMINIDEPENDENS OS=Arabidopsis thaliana OX=3702 GN=LD PE=1 SV=2","K","Transcription","PREDICTED: homeobox protein LUMINIDEPENDENS [Gossypium raimondii] "]
["c85182.graph_c0","--","--","--","--","--","--","--","Nodulin-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=NRP1 PE=1 SV=1","S","Function unknown","nodulin-related protein 1 [Carica papaya]"]
["c82342.graph_c0","--","--","--","K14291|1.96859e-33|gra:105804109|K14291 phosphorylated adapter RNA export protein | (RefSeq) uncharacterized LOC105804109","[A]","RNA processing and modification ","--","--","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein GOBAR_AA28863 [Gossypium barbadense]"]
["c49849.graph_c1","[T]","Signal transduction mechanisms ","--","K08269|0|gra:105802857|K08269 serine/threonine-protein kinase ULK/ATG1 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase atg1","[OUT]","--","Protein kinase domain;; Protein tyrosine kinase;; Protein kinase domain;; Protein tyrosine kinase;; Lipopolysaccharide kinase (Kdo/WaaP) family;; RIO1 family","Serine/threonine-protein kinase ATG1a OS=Arabidopsis thaliana OX=3702 GN=ATG1A PE=1 SV=1","T","Signal transduction mechanisms","serine/threonine-protein kinase ATG1a-like [Durio zibethinus]"]
["c32241.graph_c0","--","--","Molecular Function: phospholipase A2 activity (GO:0004623);; Molecular Function: lysophosphatidic acid acyltransferase activity (GO:0042171);; Biological Process: fatty acid homeostasis (GO:0055089);; Biological Process: phospholipid homeostasis (GO:0055091);; Biological Process: triglyceride homeostasis (GO:0070328);; ","--","[R]","General function prediction only ","--","Probable 1-acylglycerol-3-phosphate O-acyltransferase OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0520200 PE=3 SV=3","S","Function unknown","PREDICTED: 1-acylglycerol-3-phosphate O-acyltransferase isoform X3 [Gossypium raimondii]"]
["c6029.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]"]
["c92277.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","--","--","EG","--","hypothetical protein IQ07DRAFT_128074 [Pyrenochaeta sp. DS3sAY3a]"]
["c5103.graph_c1","--","--","--","--","--","--","Dirigent-like protein","Dirigent protein 4 OS=Arabidopsis thaliana OX=3702 GN=DIR4 PE=2 SV=1","S","Function unknown","PREDICTED: dirigent protein 15-like [Gossypium arboreum]"]
["c39994.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; ","--","[A]","RNA processing and modification ","Lysine methyltransferase","--","S","Function unknown","PREDICTED: protein N-lysine methyltransferase METTL21A-like isoform X1 [Gossypium arboreum] "]
["c40007.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: peptide alpha-N-acetyltransferase activity (GO:0004596);; Biological Process: N-terminal protein amino acid acetylation (GO:0006474);; Cellular Component: protein acetyltransferase complex (GO:0031248);; ","--","--","--","Acetyltransferase (GNAT) family;; Acetyltransferase (GNAT) domain;; Acetyltransferase (GNAT) domain;; Acetyltransferase (GNAT) domain;; FR47-like protein","Probable N-acetyltransferase HLS1 OS=Arabidopsis thaliana OX=3702 GN=HLS1 PE=1 SV=1","S","Function unknown","PREDICTED: probable N-acetyltransferase HLS1 [Gossypium arboreum]"]
["c94383.graph_c0","--","--","Cellular Component: PSII associated light-harvesting complex II (GO:0009517);; Biological Process: abscisic acid biosynthetic process (GO:0009688);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: photoprotection (GO:0010117);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: xanthophyll metabolic process (GO:0016122);; Biological Process: regulation of superoxide anion generation (GO:0032928);; ","--","--","--","Domain of unknown function (DUF4281)","Protein ABA DEFICIENT 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABA4 PE=2 SV=1","S","Function unknown","protein ABA DEFICIENT 4, chloroplastic [Carica papaya] "]
["c59616.graph_c0","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","K05658|2.03976e-161|gra:105777848|K05658 ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:3.6.3.44] | (RefSeq) ABC transporter B family member 9-like","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC transporter transmembrane region;; ABC transporter transmembrane region","ABC transporter B family member 11 OS=Arabidopsis thaliana OX=3702 GN=ABCB11 PE=2 SV=1","V","Defense mechanisms","PREDICTED: ABC transporter B family member 9-like [Gossypium raimondii] "]
["c35325.graph_c0","--","--","--","--","--","--","C1q domain;; Collagen triple helix repeat (20 copies)","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c86260.graph_c0","--","--","--","--","--","--","--","--","--","--","uncharacterized protein LOC111303583 [Durio zibethinus]"]
["c25183.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107911547 [Gossypium hirsutum]"]
["c46753.graph_c0","--","--","Biological Process: ribosomal large subunit assembly (GO:0000027);; Biological Process: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000463);; Cellular Component: nucleolus (GO:0005730);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: rRNA binding (GO:0019843);; ","K14847|0|gra:105786364|K14847 ribosome production factor 2 | (RefSeq) ribosome production factor 2 homolog","[J]","Translation, ribosomal structure and biogenesis ","Brix domain","Ribosome production factor 2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g23620 PE=2 SV=1","S","Function unknown","PREDICTED: ribosome production factor 2 homolog [Gossypium hirsutum] "]
["c87868.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","hypothetical protein F511_12705 [Dorcoceras hygrometricum]"]
["c24490.graph_c0","--","--","Molecular Function: L-aspartate:2-oxoglutarate aminotransferase activity (GO:0004069);; Biological Process: cellular amino acid metabolic process (GO:0006520);; Biological Process: biosynthetic process (GO:0009058);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Molecular Function: L-phenylalanine:2-oxoglutarate aminotransferase activity (GO:0080130);; ","--","[E]","Amino acid transport and metabolism ","--","--","E","Amino acid transport and metabolism","aspartate amino acid aminotransferase [Clonostachys rosea]"]
["c42957.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107928218 [Gossypium hirsutum]"]
["c35258.graph_c0","[C]","Energy production and conversion ","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: response to cytokinin (GO:0009735);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078);; Biological Process: ATP synthesis coupled proton transport (GO:0015986);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263);; ","K02109|7.93758e-115|fve:101309317|K02109 F-type H+-transporting ATPase subunit b | (RefSeq) uncharacterized LOC101309317","--","--","ATP synthase B/B' CF(0)","ATP synthase subunit b&apos;, chloroplastic OS=Spinacia oleracea OX=3562 GN=ATPG PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: uncharacterized protein LOC101309317 [Fragaria vesca subsp. vesca]"]
["c5900.graph_c0","[E]","Amino acid transport and metabolism ","--","K01262|9.75038e-37|atr:18445919|K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] | (RefSeq) probable Xaa-Pro aminopeptidase P","[E]","Amino acid transport and metabolism ","C-terminal region of peptidase_M24;; Metallopeptidase family M24","--","E","Amino acid transport and metabolism","Creatinase/aminopeptidase [Hesseltinella vesiculosa]"]
["c44317.graph_c0","[HI]","Coenzyme transport and metabolism ;; Lipid transport and metabolism ","Molecular Function: acetyl-CoA carboxylase activity (GO:0003989);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Cellular Component: acetyl-CoA carboxylase complex (GO:0009317);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; ","K02160|9.89907e-91|gra:105780508|K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein | (RefSeq) biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like","--","--","Biotin-requiring enzyme;; Biotin-lipoyl like;; RnfC Barrel sandwich hybrid domain","Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BCCP2 PE=1 SV=1","I","Lipid transport and metabolism","PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like isoform X2 [Gossypium arboreum] "]
["c40068.graph_c0","--","--","Biological Process: proteolysis (GO:0006508);; Molecular Function: metallopeptidase activity (GO:0008237);; ","--","--","--","RNAse P Rpr2/Rpp21/SNM1 subunit domain","--","S","Function unknown","hypothetical protein GOBAR_DD13054 [Gossypium barbadense]"]
["c47124.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","Ndr family;; Ndr family","Protein NDL2 OS=Arabidopsis thaliana OX=3702 GN=NDL2 PE=1 SV=1","S","Function unknown","hypothetical protein B456_009G045800 [Gossypium raimondii]"]
["c39484.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF1218)","--","S","Function unknown","hypothetical protein B456_005G190500 [Gossypium raimondii]"]
["c80624.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K04688|1.18314e-46|fve:101310997|K04688 ribosomal protein S6 kinase beta [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase AtPK2/AtPK19-like","[RT]","--","Protein kinase domain;; Protein tyrosine kinase","Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana OX=3702 GN=ATPK2 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Fragaria vesca subsp. vesca]"]
["c39415.graph_c3","--","--","Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: protein retention in ER lumen (GO:0006621);; Biological Process: defense response signaling pathway, resistance gene-independent (GO:0010204);; Biological Process: protein transport (GO:0015031);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ER retention sequence binding (GO:0046923);; ","K10949|4.12188e-90|gra:105799275|K10949 ER lumen protein retaining receptor | (RefSeq) ER lumen protein-retaining receptor-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","ER lumen protein retaining receptor","ER lumen protein-retaining receptor OS=Petunia hybrida OX=4102 GN=ERD2 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","ER lumen protein-retaining receptor-like isoform X1 [Durio zibethinus]"]
["c47689.graph_c1","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; Chalcone-flavanone isomerase;; Chalcone isomerase-like;; Chalcone isomerase like","Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana OX=3702 GN=At1g78530 PE=2 SV=1","T","Signal transduction mechanisms","receptor-like serine/threonine-protein kinase At1g78530 isoform X2 [Durio zibethinus]"]
["c39821.graph_c0","--","--","--","--","--","--","WRC","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105785449 [Gossypium raimondii] "]
["c64106.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: flavonol synthase activity (GO:0045431);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: flavonol biosynthetic process (GO:0051555);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","2OG-Fe(II) oxygenase superfamily","Protein SRG1 OS=Arabidopsis thaliana OX=3702 GN=SRG1 PE=2 SV=1","S","Function unknown","PREDICTED: protein SRG1-like [Gossypium raimondii] "]
["c29417.graph_c0","--","--","--","--","--","--","Pollen proteins Ole e I like","Anther-specific protein LAT52 OS=Solanum lycopersicum OX=4081 GN=LAT52 PE=2 SV=1","S","Function unknown","PREDICTED: olee1-like protein [Gossypium hirsutum]"]
["c81352.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC105645553 [Jatropha curcas]"]
["c22417.graph_c0","--","--","--","--","--","--","Protein of unknown function (DUF1442)","--","S","Function unknown","uncharacterized protein LOC110418653 [Herrania umbratica]"]
["c88488.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c41326.graph_c0","--",";; ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana OX=3702 GN=At5g20050 PE=2 SV=1","T","Signal transduction mechanisms","Receptor protein kinase [Theobroma cacao]"]
["c93960.graph_c0","--","--","Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","K15104|3.5854e-09|gsl:Gasu_46890|K15104 solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11 | (RefSeq) mitochondrial carrier, oxoglutarate:malate antiporter","[C]","Energy production and conversion ","Mitochondrial carrier protein","Mitochondrial uncoupling protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUMP3 PE=2 SV=1","S","Function unknown","hypothetical protein BU14_0292s0019 [Porphyra umbilicalis]"]
["c6199.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","--","Probable inactive leucine-rich repeat receptor kinase XIAO OS=Oryza sativa subsp. japonica OX=39947 GN=XIAO PE=2 SV=1","S","Function unknown","hypothetical protein B456_011G2842002, partial [Gossypium raimondii]"]
["c92642.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1","K","Transcription","PREDICTED: uncharacterized protein LOC108484814 [Gossypium arboreum]"]
["c39512.graph_c0","--","--","--","--","--","--","--","Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1","S","Function unknown","PREDICTED: protein LOL2 [Theobroma cacao]"]
["c22910.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; ","K09872|9.7788e-101|tcc:TCM_005318|K09872 aquaporin PIP | (RefSeq) Plasma membrane intrinsic protein 1B","[G]","Carbohydrate transport and metabolism ","Major intrinsic protein","Aquaporin PIP1.1 OS=Vicia faba OX=3906 GN=PIP1.1 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: aquaporin PIP1-3 [Theobroma cacao] "]
["c20353.graph_c0","--","--","--","K12492|1.66686e-09|gra:105780277|K12492 ADP-ribosylation factor GTPase-activating protein 1 | (RefSeq) probable ADP-ribosylation factor GTPase-activating protein AGD6","--","--","--","--","--","--","PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Gossypium raimondii] "]
["c9244.graph_c0","--","--","Molecular Function: phospholipase A2 activity (GO:0004623);; Molecular Function: calcium ion binding (GO:0005509);; Cellular Component: membrane (GO:0016020);; Biological Process: lipid catabolic process (GO:0016042);; ","--","--","--","--","Probable phospholipase A2 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PLA2-I PE=2 SV=1","G","Carbohydrate transport and metabolism","probable phospholipase A2 homolog 1 [Durio zibethinus]"]
["c30354.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[S]","Function unknown ","Predicted membrane protein","--","S","Function unknown","PREDICTED: transmembrane protein adipocyte-associated 1 homolog [Gossypium raimondii] "]
["c38857.graph_c0","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; ","K07195|0|gra:105786461|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70A1-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exo70 exocyst complex subunit","Exocyst complex component EXO70H1 OS=Arabidopsis thaliana OX=3702 GN=EXO70H1 PE=1 SV=1","S","Function unknown","PREDICTED: exocyst complex component EXO70A1-like [Gossypium raimondii] "]
["c94697.graph_c0","[V]","Defense mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","ABC transporter G family member 39 OS=Arabidopsis thaliana OX=3702 GN=ABCG39 PE=3 SV=1","V","Defense mechanisms","hypothetical protein CRG98_030233 [Punica granatum]"]
["c33827.graph_c0","--","--","--","--","--","--","XH domain","Factor of DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=FDM1 PE=1 SV=1","--","--","factor of DNA methylation 2-like [Durio zibethinus] "]
["c6023.graph_c1","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","--","S","Function unknown","hypothetical protein IQ06DRAFT_12361 [Stagonospora sp. SRC1lsM3a]"]
["c73090.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c80503.graph_c0","[IQR]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ;; General function prediction only ","--","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Enoyl-(Acyl carrier protein) reductase;; short chain dehydrogenase","Tropinone reductase 1 OS=Datura stramonium OX=4076 GN=TR1 PE=1 SV=1","S","Function unknown","hypothetical protein AURANDRAFT_20091 [Aureococcus anophagefferens] "]
["c76403.graph_c0","--","--","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: integral component of membrane (GO:0016021);; ","K03327|3.54146e-21|sind:105160453|K03327 multidrug resistance protein, MATE family | (RefSeq) protein TRANSPARENT TESTA 12-like","[R]","General function prediction only ","--","Protein DETOXIFICATION 35 OS=Arabidopsis thaliana OX=3702 GN=DTX35 PE=1 SV=1","V","Defense mechanisms","protein DETOXIFICATION 35-like [Spinacia oleracea]"]
["c41871.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Late embryogenesis abundant protein","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18606720 isoform X1 [Theobroma cacao]"]
["c52376.graph_c0","--","--","Molecular Function: catalytic activity (GO:0003824);; ","--","[T]","Signal transduction mechanisms ","--","Probable protein phosphatase 2C 65 OS=Arabidopsis thaliana OX=3702 GN=At5g01700 PE=2 SV=1","T","Signal transduction mechanisms","hypothetical protein F383_21554 [Gossypium arboreum]"]
["c46069.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: acid-amino acid ligase activity (GO:0016881);; Molecular Function: NEDD8 activating enzyme activity (GO:0019781);; Biological Process: protein neddylation (GO:0045116);; ","K10686|0|gra:105800495|K10686 ubiquitin-activating enzyme E1 C [EC:6.2.1.45] | (RefSeq) NEDD8-activating enzyme E1 catalytic subunit","[O]","Posttranslational modification, protein turnover, chaperones ","ThiF family;; E2 binding domain","NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=ECR1 PE=1 SV=2","H","Coenzyme transport and metabolism","hypothetical protein B456_006G236400 [Gossypium raimondii]"]
["c80914.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity (GO:0016787);; ","K01188|3.66692e-20|thj:104817161|K01188 beta-glucosidase [EC:3.2.1.21] | (RefSeq) beta-glucosidase 26, peroxisomal","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolase family 1","Furcatin hydrolase OS=Viburnum furcatum OX=237940 PE=1 SV=1","G","Carbohydrate transport and metabolism","beta-glucosidase [Rasamsonia emersonii CBS 393.64] "]
["c88143.graph_c0","[R]","General function prediction only ","Molecular Function: transcription coactivator activity (GO:0003713);; Molecular Function: protein binding (GO:0005515);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Biological Process: thiamine biosynthetic process (GO:0009228);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: glyoxalase III activity (GO:0019172);; Biological Process: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione (GO:0019243);; Molecular Function: protein deglycase activity (GO:0036524);; Biological Process: protein deglycation (GO:0036525);; Biological Process: response to cadmium ion (GO:0046686);; Biological Process: cellular response to hydrogen peroxide (GO:0070301);; Biological Process: positive regulation of cellular response to oxidative stress (GO:1900409);; ","K03152|2.20492e-35|ath:AT3G14990|K03152 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis | (RefSeq) DJ1A; Class I glutamine amidotransferase-like superfamily protein","[RV]","--","DJ-1/PfpI family","Protein DJ-1 homolog A OS=Arabidopsis thaliana OX=3702 GN=DJ1A PE=1 SV=1","S","Function unknown","Class I glutamine amidotransferase-like superfamily protein [Arabidopsis thaliana] "]
["c38665.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K17087|2.42219e-21|tcc:TCM_006937|K17087 transmembrane 9 superfamily member 3 | (RefSeq) Transmembrane nine 1","[U]","Intracellular trafficking, secretion, and vesicular transport ","Endomembrane protein 70","Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana OX=3702 GN=TMN1 PE=1 SV=1","S","Function unknown","Transmembrane nine 1 [Theobroma cacao]"]
["c46388.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: cytoplasm (GO:0005737);; ","K13126|0|gra:105761788|K13126 polyadenylate-binding protein | (RefSeq) polyadenylate-binding protein 7-like","[AJ]","--","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain);; RNA recognition motif;; Poly-adenylate binding protein, unique domain;; Poly-adenylate binding protein, unique domain","Polyadenylate-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=PAB7 PE=2 SV=1","S","Function unknown","PREDICTED: polyadenylate-binding protein 7-like [Gossypium arboreum]"]
["c94911.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[L]","Replication, recombination and repair ","--","Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1","S","Function unknown","hypothetical protein B456_002G224400 [Gossypium raimondii]"]
["c51674.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K08867|2.791e-45|gra:105796643|K08867 WNK lysine deficient protein kinase [EC:2.7.11.1] | (RefSeq) probable serine/threonine-protein kinase WNK9","[R]","General function prediction only ","--","Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana OX=3702 GN=WNK1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: probable serine/threonine-protein kinase WNK9 isoform X4 [Gossypium raimondii]"]
["c55284.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA19250 [Gossypium barbadense]"]
["c19215.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","Cellular Component: thylakoid (GO:0009579);; ","--","--","--","--","Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1","S","Function unknown","PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic-like [Juglans regia]"]
["c38749.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=1","S","Function unknown","protein AUXIN SIGNALING F-BOX 2-like [Herrania umbratica]"]
["c732.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Oxidative-stress-responsive kinase 1 C-terminal domain","--","T","Signal transduction mechanisms","--"]
["c42284.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","--","[R]","General function prediction only ","--","Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1","S","Function unknown","PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Gossypium raimondii] "]
["c24524.graph_c0","[R]","General function prediction only ","--","K13457|0|tcc:TCM_045130|K13457 disease resistance protein RPM1 | (RefSeq) Cc-nbs-lrr resistance protein, putative","[T]","Signal transduction mechanisms ","NB-ARC domain","Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1","S","Function unknown","disease resistance protein RPM1-like [Durio zibethinus]"]
["c90459.graph_c0","--","--","--","--","--","--","Myosin tail","--","--","--","--"]
["c54015.graph_c0","--","--","Biological Process: lipid metabolic process (GO:0006629);; ","--","[I]","Lipid transport and metabolism ","Armadillo/beta-catenin-like repeat","Phospholipase A I OS=Arabidopsis thaliana OX=3702 GN=PLA1 PE=3 SV=1","S","Function unknown","PREDICTED: phospholipase A I-like isoform X3 [Gossypium hirsutum] "]
["c31088.graph_c0","--","--","Cellular Component: Golgi membrane (GO:0000139);; Molecular Function: structural molecule activity (GO:0005198);; Biological Process: intracellular protein transport (GO:0006886);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: COPI vesicle coat (GO:0030126);; ","K17267|1.02668e-34|gra:105781828|K17267 coatomer subunit gamma | (RefSeq) coatomer subunit gamma","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Coatomer subunit gamma OS=Arabidopsis thaliana OX=3702 GN=At4g34450 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: coatomer subunit gamma [Gossypium raimondii] "]
["c26932.graph_c0","--","--","--","--","[S]","Function unknown ","--","Protein CELLULOSE SYNTHASE INTERACTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=CSI3 PE=1 SV=1","S","Function unknown","hypothetical protein B456_009G247700 [Gossypium raimondii]"]
["c65494.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: GDSL esterase/lipase At1g29660 [Theobroma cacao] "]
["c18186.graph_c0","--","--","Molecular Function: potassium ion transmembrane transporter activity (GO:0015079);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: potassium ion transmembrane transport (GO:0071805);; ","--","--","--","K+ potassium transporter","Potassium transporter 7 OS=Arabidopsis thaliana OX=3702 GN=POT7 PE=1 SV=2","P","Inorganic ion transport and metabolism","PREDICTED: potassium transporter 7-like [Gossypium hirsutum]"]
["c44436.graph_c0","[G]","Carbohydrate transport and metabolism ","Cellular Component: cytosol (GO:0005829);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: sedoheptulose-bisphosphatase activity (GO:0050278);; ","--","--","--","Histidine phosphatase superfamily (branch 1)","Phosphoglycerate mutase-like protein AT74 OS=Arabidopsis thaliana OX=3702 GN=At3g05170 PE=2 SV=1","T","Signal transduction mechanisms","phosphoglycerate mutase-like protein AT74H [Durio zibethinus]"]
["c79427.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02953|1.20774e-45|csv:101210321|K02953 small subunit ribosomal protein S13e | (RefSeq) 40S ribosomal protein S13","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal S13/S15 N-terminal domain","40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 40S ribosomal protein S13-like [Lupinus angustifolius]"]
["c37687.graph_c2","--","--","Molecular Function: lipid binding (GO:0008289);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","C2 domain","Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2","S","Function unknown","PREDICTED: synaptotagmin-2-like [Gossypium hirsutum]"]
["c39666.graph_c0","--","--","--","K10891|0|gra:105802319|K10891 fanconi anemia group D2 protein | (RefSeq) Fanconi anemia group D2 protein homolog","[S]","Function unknown ","Fanconi anaemia protein FancD2 nuclease","--","S","Function unknown","PREDICTED: Fanconi anemia group D2 protein homolog [Gossypium raimondii] "]
["c46982.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107904754 [Gossypium hirsutum] "]
["c67811.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Salt stress response/antifungal","Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana OX=3702 GN=CRK14 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD35768 [Gossypium barbadense]"]
["c39622.graph_c0","--","--","Biological Process: defense response to fungus, incompatible interaction (GO:0009817);; ","--","--","--","Thaumatin family","Osmotin-like protein OSM34 OS=Arabidopsis thaliana OX=3702 GN=OSM34 PE=2 SV=2","S","Function unknown","pathogenesis-related protein R major form-like [Durio zibethinus]"]
["c50549.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Biological Process: response to biotic stimulus (GO:0009607);; ","--","--","--","Pathogenesis-related protein Bet v I family","MLP-like protein 31 OS=Arabidopsis thaliana OX=3702 GN=MLP31 PE=2 SV=2","S","Function unknown","PREDICTED: MLP-like protein 43 [Gossypium raimondii] "]
["c24141.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based process (GO:0007017);; ","K07375|2.85228e-105|thj:104821546|K07375 tubulin beta | (RefSeq) tubulin beta-8 chain-like","[Z]","Cytoskeleton ","Tubulin/FtsZ family, GTPase domain;; Tubulin C-terminal domain","Tubulin beta-1 chain (Fragment) OS=Avena sativa OX=4498 GN=TUBB1 PE=2 SV=1","Z","Cytoskeleton","beta-tubulin type 1 isoform 4, partial [Aulacantha scolymantha] "]
["c92105.graph_c0","--","--","Molecular Function: receptor activity (GO:0004872);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[C]","Energy production and conversion ","Renin receptor-like protein","--","U","Intracellular trafficking, secretion, and vesicular transport","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c32020.graph_c1","--","--","Cellular Component: exocyst (GO:0000145);; Biological Process: exocytosis (GO:0006887);; Cellular Component: pollen tube (GO:0090406);; ","K07195|2.65216e-162|gra:105778823|K07195 exocyst complex component 7 | (RefSeq) exocyst complex component EXO70B1","[U]","Intracellular trafficking, secretion, and vesicular transport ","Exo70 exocyst complex subunit","Exocyst complex component EXO70B1 OS=Arabidopsis thaliana OX=3702 GN=EXO70B1 PE=1 SV=1","S","Function unknown","PREDICTED: exocyst complex component EXO70B1 [Gossypium arboreum]"]
["c37083.graph_c0","--","--","Cellular Component: gamma-tubulin complex (GO:0000930);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule nucleation (GO:0007020);; Biological Process: cytoplasmic microtubule organization (GO:0031122);; ","K10389|1.83177e-19|gra:105763889|K10389 tubulin gamma | (RefSeq) tubulin gamma-1 chain-like","[Z]","Cytoskeleton ","--","Tubulin gamma-2 chain OS=Arabidopsis thaliana OX=3702 GN=TUBG2 PE=1 SV=1","Z","Cytoskeleton","PREDICTED: tubulin gamma-1 chain-like [Gossypium raimondii] "]
["c6023.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","--","--","S","Function unknown","hypothetical protein IQ06DRAFT_12361 [Stagonospora sp. SRC1lsM3a]"]
["c80963.graph_c0","--","--","--","--","[F]","Nucleotide transport and metabolism ","Nucleoside transporter","--","S","Function unknown","--"]
["c44107.graph_c0","--","--","Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","Helix-loop-helix DNA-binding domain","Transcription factor bHLH30 OS=Arabidopsis thaliana OX=3702 GN=BHLH30 PE=1 SV=1","K","Transcription","hypothetical protein GOBAR_DD08055 [Gossypium barbadense]"]
["c47597.graph_c0","[U]","Intracellular trafficking, secretion, and vesicular transport ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: non-membrane spanning protein tyrosine kinase activity (GO:0004715);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to brassinosteroid (GO:0009741);; Biological Process: unidimensional cell growth (GO:0009826);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: peptidyl-tyrosine phosphorylation (GO:0018108);; ","--","[T]","Signal transduction mechanisms ","Carbohydrate-binding protein of the ER;; Di-glucose binding within endoplasmic reticulum;; Protein tyrosine kinase;; Protein kinase domain","Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana OX=3702 GN=At1g30570 PE=3 SV=1","T","Signal transduction mechanisms","PREDICTED: probable receptor-like protein kinase At1g30570 [Gossypium arboreum]"]
["c49680.graph_c0","[P]","Inorganic ion transport and metabolism ","--","--","[P]","Inorganic ion transport and metabolism ","Sodium/hydrogen exchanger family;; Sodium/hydrogen exchanger family;; TrkA-N domain;; Sodium/hydrogen exchanger family","K(+) efflux antiporter 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=KEA1 PE=1 SV=2","P","Inorganic ion transport and metabolism","K(+) efflux antiporter 2, chloroplastic-like isoform X1 [Durio zibethinus] "]
["c30340.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein O-linked glycosylation (GO:0006493);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; ","K09667|4.53705e-66|gra:105804571|K09667 protein O-GlcNAc transferase [EC:2.4.1.255] | (RefSeq) probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC","[GOT]","--","Glycosyl transferase family 41","Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_007G2711002, partial [Gossypium raimondii]"]
["c47910.graph_c1","--","--","Molecular Function: copper ion binding (GO:0005507);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00423|1.52199e-56|gra:105783515|K00423 L-ascorbate oxidase [EC:1.10.3.3] | (RefSeq) L-ascorbate oxidase homolog","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Multicopper oxidase","L-ascorbate oxidase homolog OS=Nicotiana tabacum OX=4097 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein B456_013G2447002, partial [Gossypium raimondii]"]
["c37339.graph_c0","--","--","--","K15361|1.27773e-08|gra:105783098|K15361 WD repeat-containing protein 48 | (RefSeq) WD repeat-containing protein 48-like","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: WD repeat-containing protein 48-like isoform X2 [Gossypium raimondii]"]
["c88621.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","GGL domain","--","T","Signal transduction mechanisms","--"]
["c47378.graph_c0","[R]","General function prediction only ","--","--","--","--","WD domain, G-beta repeat;; Anaphase-promoting complex subunit 4 WD40 domain","COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like isoform X1 [Gossypium raimondii]"]
["c52519.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: cystathionine beta-lyase activity (GO:0004121);; Cellular Component: chloroplast stroma (GO:0009570);; Molecular Function: pyridoxal phosphate binding (GO:0030170);; Biological Process: 'de novo' L-methionine biosynthetic process (GO:0071266);; ","K01760|8.06493e-22|tcc:TCM_024360|K01760 cystathionine beta-lyase [EC:4.4.1.8] | (RefSeq) Cystathionine beta-lyase isoform 1","[E]","Amino acid transport and metabolism ","Cys/Met metabolism PLP-dependent enzyme","Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g57050 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: cystathionine beta-lyase, chloroplastic-like [Juglans regia]"]
["c32451.graph_c0","--","--","--","K11367|3.04053e-08|gra:105782494|K11367 chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12] | (RefSeq) protein CHROMATIN REMODELING 5","--","--","--","--","--","--","hypothetical protein B456_013G252300 [Gossypium raimondii] "]
["c24711.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: oxygen-dependent protoporphyrinogen oxidase activity (GO:0004729);; Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779);; Cellular Component: chloroplast thylakoid (GO:0009534);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00231|0|gra:105802900|K00231 protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15] | (RefSeq) protoporphyrinogen oxidase 1, chloroplastic","[H]","Coenzyme transport and metabolism ","Flavin containing amine oxidoreductase;; NAD(P)-binding Rossmann-like domain","Protoporphyrinogen oxidase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPOX1 PE=1 SV=1","H","Coenzyme transport and metabolism","hypothetical protein GOBAR_DD35503 [Gossypium barbadense]"]
["c412.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","--","--","--","--","--","Mitogen-activated protein kinase kinase kinase 3, putative [Theobroma cacao]"]
["c49024.graph_c1","--","--","Biological Process: ion transport (GO:0006811);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","--","[M]","Cell wall/membrane/envelope biogenesis ","Mechanosensitive ion channel;; ARID/BRIGHT DNA binding domain;; HMG (high mobility group) box","Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana OX=3702 GN=MSL8 PE=2 SV=2","M","Cell wall/membrane/envelope biogenesis","PREDICTED: mechanosensitive ion channel protein 6 [Theobroma cacao]"]
["c35690.graph_c0","--","--","Biological Process: response to auxin (GO:0009733);; ","--","--","--","Auxin responsive protein","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107932642 [Gossypium hirsutum]"]
["c88491.graph_c0","--","--","Biological Process: carbohydrate transport (GO:0008643);; Molecular Function: 2-dehydropantoate 2-reductase activity (GO:0008677);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: substrate-specific transmembrane transporter activity (GO:0022891);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","G","Carbohydrate transport and metabolism","hypothetical protein I206_02662 [Kwoniella pini CBS 10737] "]
["c5363.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: lysine-tRNA ligase activity (GO:0004824);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: lysyl-tRNA aminoacylation (GO:0006430);; ","K04567|3.55648e-28|tcc:TCM_021675|K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] | (RefSeq) Lysyl-tRNA synthetase 1","[J]","Translation, ribosomal structure and biogenesis ","--","Lysine--tRNA ligase OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0586800 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Lysyl-tRNA synthetase 1 [Theobroma cacao]"]
["c1233.graph_c0","--","--","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Biological Process: glucose import (GO:0046323);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","[R]","General function prediction only ","Sugar (and other) transporter","--","G","Carbohydrate transport and metabolism","hypothetical protein TREMEDRAFT_42510 [Tremella mesenterica DSM 1558] "]
["c72280.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: homogentisate 1,2-dioxygenase activity (GO:0004411);; Biological Process: L-phenylalanine catabolic process (GO:0006559);; Biological Process: tyrosine metabolic process (GO:0006570);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00451|8.39046e-81|apro:F751_2557|K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5] | (RefSeq) Homogentisate 1,2-dioxygenase","[E]","Amino acid transport and metabolism ","homogentisate 1,2-dioxygenase","Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana OX=3702 GN=HGO PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","Homogentisate 1,2-dioxygenase [Conidiobolus coronatus NRRL 28638]"]
["c92985.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Fibronectin type III domain","--","S","Function unknown","--"]
["c36837.graph_c0","--","--","--","--","--","--","F-box domain;; F-box-like;; F-box associated domain;; F-box associated","Putative F-box protein At5g52610 OS=Arabidopsis thaliana OX=3702 GN=At5g52610 PE=4 SV=1","S","Function unknown","PREDICTED: F-box protein At5g49610-like [Gossypium raimondii] "]
["c90989.graph_c0","--","--","Biological Process: cation transport (GO:0006812);; Cellular Component: membrane (GO:0016020);; Biological Process: transmembrane transport (GO:0055085);; ","--","--","--","--","--","--","--","cation/H(+) antiporter 28 [Durio zibethinus]"]
["c49806.graph_c1","[O]","Posttranslational modification, protein turnover, chaperones ","--","K09490|0|tcc:TCM_016516|K09490 heat shock 70kDa protein 5 | (RefSeq) Heat shock protein 70 (Hsp 70) family protein","[O]","Posttranslational modification, protein turnover, chaperones ","Hsp70 protein;; MreB/Mbl protein;; NAD-specific glutamate dehydrogenase","Luminal-binding protein 5 OS=Nicotiana tabacum OX=4097 GN=BIP5 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Luminal-binding 5 [Gossypium arboreum]"]
["c71790.graph_c0","[ER]","Amino acid transport and metabolism ;; General function prediction only ","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","--","E","Amino acid transport and metabolism","(R,R)-butanediol dehydrogenase, putative [Cryptococcus gattii WM276] "]
["c59017.graph_c0","[S]","Function unknown ","--","--","--","--","--","IQ domain-containing protein IQM6 OS=Arabidopsis thaliana OX=3702 GN=IQM6 PE=2 SV=1","S","Function unknown","PREDICTED: IQ domain-containing protein IQM6 [Theobroma cacao]"]
["c18344.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; ","--","--","--","--","CCG-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=MEE14 PE=1 SV=1","S","Function unknown","PREDICTED: CCG-binding protein 1 [Theobroma cacao] "]
["c78148.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: RNA-dependent DNA biosynthetic process (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plastid (GO:0009536);; ","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","uncharacterized protein LOC105172306 [Sesamum indicum]"]
["c28988.graph_c0","[T]","Signal transduction mechanisms ","Cellular Component: chloroplast (GO:0009507);; Biological Process: chloroplast-nucleus signaling pathway (GO:0010019);; Molecular Function: enzyme binding (GO:0019899);; Molecular Function: tetrapyrrole binding (GO:0046906);; ","--","--","--","GUN4-like","Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GUN4 PE=1 SV=1","S","Function unknown","PREDICTED: tetrapyrrole-binding protein, chloroplastic-like [Gossypium hirsutum]"]
["c18219.graph_c0","--","--","Molecular Function: superoxide dismutase activity (GO:0004784);; Cellular Component: chloroplast (GO:0009507);; Biological Process: removal of superoxide radicals (GO:0019430);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular response to high light intensity (GO:0071486);; ","K04565|1.43848e-12|pmum:103326203|K04565 superoxide dismutase, Cu-Zn family [EC:1.15.1.1] | (RefSeq) superoxide dismutase [Cu-Zn], chloroplastic","--","--","--","--","--","--","PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic [Prunus mume]"]
["c31133.graph_c0","--","--","Molecular Function: RNA polymerase II transcription cofactor activity (GO:0001104);; Biological Process: regulation of transcription from RNA polymerase II promoter (GO:0006357);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: mediator complex (GO:0016592);; ","--","[K]","Transcription ","--","Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana OX=3702 GN=MED12 PE=1 SV=1","K","Transcription","PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Gossypium arboreum] "]
["c38656.graph_c1","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Biological Process: DNA integration (GO:0015074);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ziziphus jujuba]"]
["c29666.graph_c0","--","--","--","K17267|7.91084e-07|gra:105781828|K17267 coatomer subunit gamma | (RefSeq) coatomer subunit gamma","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0201100 PE=2 SV=1","--","--","coatomer subunit gamma-2-like isoform X2 [Durio zibethinus]"]
["c855.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","Retrotransposable element Tf2 [Cajanus cajan]"]
["c18177.graph_c0","--","--","Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Molecular Function: abscisic acid binding (GO:0010427);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; ","K14496|4.60342e-19|gra:105771082|K14496 abscisic acid receptor PYR/PYL family | (RefSeq) abscisic acid receptor PYL12-like","--","--","--","Abscisic acid receptor PYL11 OS=Arabidopsis thaliana OX=3702 GN=PYL11 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA37880 [Gossypium barbadense]"]
["c24967.graph_c0","[C]","Energy production and conversion ","Biological Process: citrate metabolic process (GO:0006101);; Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912);; ","K01647|0|ppp:PHYPADRAFT_179651|K01647 citrate synthase [EC:2.3.3.1] | (RefSeq) hypothetical protein","[C]","Energy production and conversion ","Citrate synthase, C-terminal domain","Citrate synthase, mitochondrial OS=Daucus carota OX=4039 GN=CS PE=2 SV=1","C","Energy production and conversion","citrate synthase [Phycomyces blakesleeanus NRRL 1555(-)] "]
["c56872.graph_c0","--","--","--","--","[R]","General function prediction only ","gag-polypeptide of LTR copia-type","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107899917 [Gossypium hirsutum]"]
["c34309.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1","K","Transcription","PREDICTED: myb-related protein B-like [Gossypium raimondii] "]
["c40143.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Cellular Component: membrane (GO:0016020);; ","K02968|4.68466e-42|tcc:TCM_031612|K02968 small subunit ribosomal protein S20 | (RefSeq) 30S ribosomal protein S20 isoform 1","--","--","Ribosomal protein S20","30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","Ribosomal protein S20 [Corchorus capsularis]"]
["c39408.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein B456_010G225400 [Gossypium raimondii]"]
["c60971.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105762593 [Gossypium raimondii] "]
["c72201.graph_c0","--","--","--","K14553|2.14144e-17|gra:105761853|K14553 U3 small nucleolar RNA-associated protein 18 | (RefSeq) U3 small nucleolar RNA-associated protein 18 homolog","[R]","General function prediction only ","--","U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD29205 [Gossypium barbadense]"]
["c39286.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: ligase activity (GO:0016874);; ","K15691|0|gra:105799745|K15691 E3 ubiquitin-protein ligase RFWD3 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RFWD3","[O]","Posttranslational modification, protein turnover, chaperones ","Ring finger domain;; Zinc finger, C3HC4 type (RING finger);; RING-type zinc-finger","--","S","Function unknown","PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Gossypium raimondii] "]
["c90110.graph_c0","[I]","Lipid transport and metabolism ","--","--","--","--","--","--","--","--","--"]
["c24736.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; ","--","--","--","SBP domain","Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SPL8 PE=1 SV=2","K","Transcription","PREDICTED: squamosa promoter-binding-like protein 3 [Gossypium raimondii] "]
["c33194.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","Transcription factor bHLH111 OS=Arabidopsis thaliana OX=3702 GN=BHLH111 PE=2 SV=1","S","Function unknown","PREDICTED: transcription factor bHLH114-like isoform X2 [Gossypium hirsutum]"]
["c40341.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; GAG-pre-integrase domain;; Reverse transcriptase (RNA-dependent DNA polymerase)","Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Solanum pennellii]"]
["c95015.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02930|3.14217e-24|nnu:104594733|K02930 large subunit ribosomal protein L4e | (RefSeq) 60S ribosomal protein L4-like","[A]","RNA processing and modification ","Ribosomal protein L4/L1 family","60S ribosomal protein L4-1 OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 60S ribosomal protein L4-like [Nelumbo nucifera]"]
["c47909.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Mitochondrial 28S ribosomal protein S27;; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA25486 [Gossypium barbadense]"]
["c38164.graph_c0","--","--","Molecular Function: mRNA binding (GO:0003729);; Cellular Component: mRNA cleavage factor complex (GO:0005849);; Biological Process: mRNA polyadenylation (GO:0006378);; Molecular Function: hydrolase activity (GO:0016787);; ","K14397|2.80147e-140|gra:105768269|K14397 cleavage and polyadenylation specificity factor subunit 5 | (RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1-like","[A]","RNA processing and modification ","Nucleotide hydrolase","Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CFIS1 PE=1 SV=1","A","RNA processing and modification","PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Gossypium raimondii] "]
["c45449.graph_c0","--","--","--","--","--","--","Phosphate-induced protein 1 conserved region","Protein EXORDIUM-like 4 OS=Arabidopsis thaliana OX=3702 GN=EXL4 PE=2 SV=1","S","Function unknown","PREDICTED: protein EXORDIUM-like 2 [Gossypium raimondii] "]
["c36416.graph_c0","--","--","--","--","[R]","General function prediction only ","Phosphatidylethanolamine-binding protein;; Phosphatidylethanolamine-binding protein","Protein MOTHER of FT and TFL1 OS=Arabidopsis thaliana OX=3702 GN=MFT PE=1 SV=1","S","Function unknown","PREDICTED: protein MOTHER of FT and TFL1-like [Gossypium arboreum] "]
["c40599.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Biological Process: guanosine tetraphosphate metabolic process (GO:0015969);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; Molecular Function: amino acid binding (GO:0016597);; ","--","[T]","Signal transduction mechanisms ","--","Putative GTP diphosphokinase RSH1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RSH1 PE=1 SV=1","KT","--","PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Gossypium raimondii]"]
["c37783.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: ligase activity (GO:0016874);; ","--","--","--","Zinc finger, C3HC4 type (RING finger);; Ring finger domain;; Zinc finger, C3HC4 type (RING finger)","--","S","Function unknown","PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Gossypium arboreum]"]
["c87655.graph_c0","--","--","Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);; Biological Process: S-adenosylmethioninamine biosynthetic process (GO:0006557);; Biological Process: spermine biosynthetic process (GO:0006597);; Biological Process: spermidine biosynthetic process (GO:0008295);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC4336294 isoform X2 [Oryza sativa Japonica Group] "]
["c83978.graph_c0","--","--","--","--","--","--","Cytokine-like protein 1","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c46631.graph_c0","--","--","--","K20131|1.29644e-159|gra:105773760|K20131 Rab5 GDP/GTP exchange factor | (RefSeq) vacuolar protein sorting-associated protein 9A-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Vacuolar sorting protein 9 (VPS9) domain","Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana OX=3702 GN=VPS9A PE=1 SV=1","S","Function unknown","PREDICTED: vacuolar protein sorting-associated protein 9A-like [Gossypium hirsutum]"]
["c28280.graph_c0","--","--","--","--","--","--","--","Probable WRKY transcription factor 19 OS=Arabidopsis thaliana OX=3702 GN=WRKY19 PE=3 SV=1","S","Function unknown","uncharacterized protein LOC110414547 [Herrania umbratica]"]
["c52654.graph_c0","--","--","--","--","--","--","Glycine rich protein family","--","--","--","PREDICTED: cold and drought-regulated protein CORA-like isoform X4 [Gossypium raimondii]"]
["c40569.graph_c0","[D]","Cell cycle control, cell division, chromosome partitioning ","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","--","U-box domain","U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA34734 [Gossypium barbadense]"]
["c41226.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Myb-like DNA-binding domain","Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1","K","Transcription","PREDICTED: protein RADIALIS-like 3 isoform X2 [Gossypium raimondii] "]
["c39644.graph_c1","--","--","Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity (GO:0003854);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: steroid biosynthetic process (GO:0006694);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: oxidation-reduction process (GO:0055114);; ","K07748|5.54378e-18|gra:105778202|K07748 sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) [EC:1.1.1.170] | (RefSeq) 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like","--","--","--","3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana OX=3702 GN=3BETAHSD/D2 PE=2 SV=2","M","Cell wall/membrane/envelope biogenesis","hypothetical protein B456_011G139300 [Gossypium raimondii]"]
["c58851.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107956855 [Gossypium hirsutum]"]
["c28499.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Cellular Component: cell wall (GO:0005618);; Biological Process: xyloglucan metabolic process (GO:0010411);; Molecular Function: xyloglucan:xyloglucosyl transferase activity (GO:0016762);; Biological Process: cell wall biogenesis (GO:0042546);; Cellular Component: apoplast (GO:0048046);; Biological Process: cell wall organization (GO:0071555);; ","K08235|1.76845e-28|gra:105782751|K08235 xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] | (RefSeq) probable xyloglucan endotransglucosylase/hydrolase protein 28","--","--","--","Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana OX=3702 GN=XTH28 PE=2 SV=1","G","Carbohydrate transport and metabolism","probable xyloglucan endotransglucosylase/hydrolase protein 28 [Durio zibethinus]"]
["c79995.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","K00477|5.51845e-12|pxb:103931873|K00477 phytanoyl-CoA hydroxylase [EC:1.14.11.18] | (RefSeq) phytanoyl-CoA dioxygenase","[I]","Lipid transport and metabolism ","Phytanoyl-CoA dioxygenase (PhyH)","Phytanoyl-CoA dioxygenase OS=Arabidopsis thaliana OX=3702 GN=PAHX PE=2 SV=2","Q","Secondary metabolites biosynthesis, transport and catabolism","hypothetical protein AC578_1079 [Mycosphaerella eumusae]"]
["c39439.graph_c0","--","--","Cellular Component: vacuolar membrane (GO:0005774);; Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: integral component of membrane (GO:0016021);; ","K03327|0|gra:105794289|K03327 multidrug resistance protein, MATE family | (RefSeq) protein TRANSPARENT TESTA 12-like","[R]","General function prediction only ","MatE","Protein DETOXIFICATION 40 OS=Arabidopsis thaliana OX=3702 GN=DTX40 PE=1 SV=1","V","Defense mechanisms","hypothetical protein GOBAR_AA31558 [Gossypium barbadense]"]
["c28318.graph_c0","[C]","Energy production and conversion ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: respiratory electron transport chain (GO:0022904);; Cellular Component: respiratory chain (GO:0070469);; ","K00412|3.23777e-121|ccp:ChcroMp07|K00412 ubiquinol-cytochrome c reductase cytochrome b subunit | (RefSeq) cob; apocytochrome b","[C]","Energy production and conversion ","--","Cytochrome b OS=Chondrus crispus OX=2769 GN=MT-CYB PE=3 SV=1","C","Energy production and conversion","cytochrome b (mitochondrion) [Gracilaria chilensis] "]
["c31001.graph_c0","[X]","Mobilome: prophages, transposons","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; zinc-binding in reverse transcriptase;; zinc-binding in reverse transcriptase;; Domain of unknown function (DUF4283)","--","S","Function unknown","reverse transcriptase [Corchorus capsularis]"]
["c44754.graph_c0","--","--","Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; Cellular Component: nuclear part (GO:0044428);; Molecular Function: organic cyclic compound binding (GO:0097159);; Molecular Function: heterocyclic compound binding (GO:1901363);; ","K13107|4.49078e-40|tcc:TCM_041636|K13107 RNA-binding motif protein, X-linked 2 | (RefSeq) RNA recognition motif-containing protein, putative","[R]","General function prediction only ","--","Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=At3g47120 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA23967 [Gossypium barbadense]"]
["c47592.graph_c0","--","--","Biological Process: cellular process (GO:0009987);; Cellular Component: intracellular part (GO:0044424);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[K]","Transcription ","Associated with HOX;; Homeobox KN domain;; Homeobox domain;; Associated with HOX","BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BLH1 PE=1 SV=1","K","Transcription","PREDICTED: BEL1-like homeodomain protein 1 [Gossypium arboreum] "]
["c65259.graph_c0","[C]","Energy production and conversion ","Molecular Function: iron-sulfur cluster binding (GO:0051536);; ","K02639|5.57181e-44|tcc:TCM_041404|K02639 ferredoxin | (RefSeq) Ferredoxin 3","--","--","2Fe-2S iron-sulfur cluster binding domain","Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1","C","Energy production and conversion","PREDICTED: ferredoxin-1-like [Gossypium hirsutum] "]
["c39221.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein folding (GO:0006457);; Molecular Function: unfolded protein binding (GO:0051082);; ","K09519|1.25908e-107|gra:105787137|K09519 DnaJ homolog subfamily B member 13 | (RefSeq) protein starmaker-like","[O]","Posttranslational modification, protein turnover, chaperones ","DnaJ C terminal domain","DnaJ protein ERDJ3B OS=Oryza sativa subsp. japonica OX=39947 GN=ERDJ3B PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC108481317 [Gossypium arboreum]"]
["c29247.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g11310 PE=2 SV=1","S","Function unknown","pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Durio zibethinus]"]
["c37407.graph_c0","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: plastoglobule (GO:0010287);; Biological Process: methylation (GO:0032259);; ","--","--","--","--","Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g41040 PE=1 SV=1","H","Coenzyme transport and metabolism","hypothetical protein B456_009G013400 [Gossypium raimondii]"]
["c46912.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV=2","S","Function unknown","uncharacterized protein LOC111290870 isoform X1 [Durio zibethinus]"]
["c32986.graph_c0","--","--","--","K15361|5.30998e-14|gra:105804739|K15361 WD repeat-containing protein 48 | (RefSeq) WD repeat-containing protein 48","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: WD repeat-containing protein 48 homolog isoform X2 [Gossypium raimondii]"]
["c46147.graph_c0","[G]","Carbohydrate transport and metabolism ","--","--","[R]","General function prediction only ","Sugar (and other) transporter;; Major Facilitator Superfamily","Probable polyol transporter 4 OS=Arabidopsis thaliana OX=3702 GN=PLT4 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: probable polyol transporter 4 [Gossypium raimondii] "]
["c27506.graph_c1","[G]","Carbohydrate transport and metabolism ","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: carbohydrate binding (GO:0030246);; ","--","[G]","Carbohydrate transport and metabolism ","--","Putative alpha-xylosidase 2 OS=Arabidopsis thaliana OX=3702 GN=XYL2 PE=5 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein B456_013G001500 [Gossypium raimondii]"]
["c41944.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF3444)","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: uncharacterized protein LOC108467119 [Gossypium arboreum] "]
["c31941.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Mitogen-activated protein kinase kinase kinase 17 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK17 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Gossypium arboreum]"]
["c26306.graph_c0","--",";; ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: phosphorylation (GO:0016310);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase;; D-mannose binding lectin;; S-locus glycoprotein domain","G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 OS=Oryza sativa subsp. indica OX=39946 GN=LECRK2 PE=2 SV=1","T","Signal transduction mechanisms","putative receptor protein kinase ZmPK1 [Durio zibethinus]"]
["c18241.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: 6-phosphofructokinase activity (GO:0003872);; Molecular Function: ATP binding (GO:0005524);; Biological Process: fructose 6-phosphate metabolic process (GO:0006002);; Cellular Component: chloroplast (GO:0009507);; Biological Process: carbohydrate phosphorylation (GO:0046835);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: glycolytic process through fructose-6-phosphate (GO:0061615);; ","K00850|3.49219e-121|tcc:TCM_014852|K00850 6-phosphofructokinase 1 [EC:2.7.1.11] | (RefSeq) Phosphofructokinase 4","[G]","Carbohydrate transport and metabolism ","Phosphofructokinase","ATP-dependent 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PFK4 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: ATP-dependent 6-phosphofructokinase 4, chloroplastic [Gossypium arboreum] "]
["c24485.graph_c1","--","--","Cellular Component: plastid (GO:0009536);; Molecular Function: transferase activity (GO:0016740);; Cellular Component: intracellular organelle part (GO:0044446);; ","K00799|6.14735e-17|tcc:TCM_004593|K00799 glutathione S-transferase [EC:2.5.1.18] | (RefSeq) Glutathione S-transferase 7 isoform 1","[O]","Posttranslational modification, protein turnover, chaperones ","--","Glutathione S-transferase OS=Silene vulgaris OX=42043 GN=GST PE=1 SV=3","O","Posttranslational modification, protein turnover, chaperones","Glutathione S-transferase 7 isoform 1 [Theobroma cacao]"]
["c45307.graph_c0","[R]","General function prediction only ","Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF616)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108479379 isoform X1 [Gossypium arboreum]"]
["c84015.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: cell redox homeostasis (GO:0045454);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","Pyridine nucleotide-disulphide oxidoreductase","--","S","Function unknown","hypothetical protein BD324DRAFT_651883 [Kockovaella imperatae] "]
["c34134.graph_c1","--","--","--","--","--","--","F-box domain;; F-box-like;; Kelch motif","F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1","S","Function unknown","PREDICTED: F-box/kelch-repeat protein At3g23880-like [Gossypium arboreum] "]
["c83180.graph_c0","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: methylation (GO:0032259);; ","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108660426 [Theobroma cacao]"]
["c95576.graph_c0","[H]","Coenzyme transport and metabolism ","Molecular Function: methionine adenosyltransferase activity (GO:0004478);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Biological Process: methionine metabolic process (GO:0006555);; Biological Process: S-adenosylmethionine biosynthetic process (GO:0006556);; Biological Process: one-carbon metabolic process (GO:0006730);; Molecular Function: metal ion binding (GO:0046872);; ","K00789|4.14163e-35|ppp:PHYPADRAFT_187695|K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] | (RefSeq) hypothetical protein","[H]","Coenzyme transport and metabolism ","S-adenosylmethionine synthetase, N-terminal domain","S-adenosylmethionine synthase OS=Musa acuminata OX=4641 GN=METK PE=2 SV=1","H","Coenzyme transport and metabolism","S-adenosylmethionine synthetase, partial [Tilletiaria anomala UBC 951] "]
["c42093.graph_c0","[K]","Transcription ","--","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat","Plant intracellular Ras-group-related LRR protein 6 OS=Arabidopsis thaliana OX=3702 GN=PIRL6 PE=2 SV=1","S","Function unknown","PREDICTED: plant intracellular Ras-group-related LRR protein 6-like [Gossypium hirsutum] "]
["c32717.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[E]","Amino acid transport and metabolism ","Transmembrane amino acid transporter protein;; Transmembrane amino acid transporter protein","Lysine histidine transporter-like 6 OS=Arabidopsis thaliana OX=3702 GN=At1g25530 PE=2 SV=1","E","Amino acid transport and metabolism","lysine histidine transporter-like 6 isoform X1 [Herrania umbratica]"]
["c40375.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: histone binding (GO:0042393);; ","--","[BK]","--","--","Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana OX=3702 GN=SYD PE=1 SV=1","L","Replication, recombination and repair","Smarca2 [Gossypium arboreum]"]
["c46572.graph_c0","[IQ]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ","--","--","[I]","Lipid transport and metabolism ","AMP-binding enzyme;; AMP-binding enzyme C-terminal domain;; Strictosidine synthase;; SMP-30/Gluconolaconase/LRE-like region","Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana OX=3702 GN=AAE2 PE=2 SV=1","IQ","--","probable acyl-activating enzyme 2 [Durio zibethinus]"]
["c37322.graph_c0","--","--","Molecular Function: isomerase activity (GO:0016853);; ","K12617|1.6111e-78|gra:105789562|K12617 DNA topoisomerase 2-associated protein PAT1 | (RefSeq) uncharacterized LOC105789562","--","--","--","Protein PAT1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=PAT1H2 PE=2 SV=1","S","Function unknown","protein PAT1 homolog 1-like isoform X2 [Durio zibethinus]"]
["c72956.graph_c0","[CHR]","Energy production and conversion ;; Coenzyme transport and metabolism ;; General function prediction only ","--","K00049|1.17428e-07|ccp:CHC_T00009559001|K00049 glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] | (RefSeq) glyoxylate reductase/hydroxypyruvate reductase","[C]","Energy production and conversion ","D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain","--","C","Energy production and conversion","hypothetical protein HMPREF1544_05381 [Mucor circinelloides f. circinelloides 1006PhL]"]
["c46860.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","--","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1","S","Function unknown","hypothetical protein B456_013G042300 [Gossypium raimondii]"]
["c16650.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107891047 [Gossypium hirsutum]"]
["c12508.graph_c0","--","--","Cellular Component: vacuole (GO:0005773);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: water transport (GO:0006833);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: cellular water homeostasis (GO:0009992);; Molecular Function: water channel activity (GO:0015250);; Molecular Function: glycerol channel activity (GO:0015254);; Biological Process: glycerol transport (GO:0015793);; Biological Process: ion transmembrane transport (GO:0034220);; ","K09872|1.80531e-45|zma:542645|K09872 aquaporin PIP | (RefSeq) pip2g, PIP2-7, ZmPIP2-7; plasma membrane intrinsic protein 2","[G]","Carbohydrate transport and metabolism ","Major intrinsic protein","Aquaporin PIP2-7 OS=Zea mays OX=4577 GN=PIP2-7 PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GLYMA_12G172500 [Glycine max]"]
["c7167.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107942205, partial [Gossypium hirsutum]"]
["c49203.graph_c0","--","--","--","--","[GM]","--","BSD domain;; galactosyl transferase GMA12/MNN10 family","Putative glycosyltransferase 7 OS=Arabidopsis thaliana OX=3702 GN=GT7 PE=2 SV=1","S","Function unknown","Galactosyl transferase GMA12/MNN10 family protein isoform 1 [Theobroma cacao] "]
["c47514.graph_c0","[C]","Energy production and conversion ","Cellular Component: mitochondrion (GO:0005739);; Biological Process: leucine catabolic process (GO:0006552);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00311|0|gra:105777129|K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] | (RefSeq) electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial","[C]","Energy production and conversion ","FAD dependent oxidoreductase;; FAD binding domain;; Thi4 family;; NAD(P)-binding Rossmann-like domain;; Pyridine nucleotide-disulphide oxidoreductase;; Lycopene cyclase protein;; FAD-NAD(P)-binding","Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ETFQO PE=2 SV=1","C","Energy production and conversion","PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like [Gossypium hirsutum]"]
["c24986.graph_c1","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107898098 [Gossypium hirsutum]"]
["c55790.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; ","K15920|1.90823e-24|gra:105795048|K15920 beta-D-xylosidase 4 [EC:3.2.1.37] | (RefSeq) beta-xylosidase/alpha-L-arabinofuranosidase 2","--","--","--","Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia OX=36902 GN=Xyl2 PE=2 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 2 [Gossypium raimondii] "]
["c91300.graph_c0","--","--","--","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeats (2 copies)","--","S","Function unknown","--"]
["c53307.graph_c0","--","--","Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity (GO:0004739);; Biological Process: acetyl-CoA biosynthetic process from pyruvate (GO:0006086);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00162|3.37622e-19|gra:105774430|K00162 pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] | (RefSeq) pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like","[C]","Energy production and conversion ","--","Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDH2 PE=1 SV=2","C","Energy production and conversion","PREDICTED: pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like [Gossypium hirsutum] "]
["c87887.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Biological Process: translational initiation (GO:0006413);; Cellular Component: integral component of membrane (GO:0016021);; ","K03257|1.0678e-42|ccp:CHC_T00008748001|K03257 translation initiation factor 4A | (RefSeq) Translation initiation factor eIF4, subunit A","[J]","Translation, ribosomal structure and biogenesis ","Helicase conserved C-terminal domain","Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1","L","Replication, recombination and repair","eukaryotic initiation factor 4A-II-like protein, partial [Pinus massoniana]"]
["c59785.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein B456_005G039400 [Gossypium raimondii]"]
["c21579.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: protein glycosylation (GO:0006486);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: carbohydrate binding (GO:0030246);; Molecular Function: galactosylxylosylprotein 3-beta-galactosyltransferase activity (GO:0047220);; ","K20843|1.49172e-21|mus:103989427|K20843 hydroxyproline O-galactosyltransferase 2/3/4/5/6 [EC:2.4.1.-] | (RefSeq) hydroxyproline O-galactosyltransferase GALT6","[G]","Carbohydrate transport and metabolism ","--","Hydroxyproline O-galactosyltransferase GALT5 OS=Arabidopsis thaliana OX=3702 GN=GALT5 PE=1 SV=1","S","Function unknown","PREDICTED: probable beta-1,3-galactosyltransferase 19 [Ziziphus jujuba]"]
["c86686.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA26000 [Gossypium barbadense]"]
["c68779.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: transport (GO:0006810);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity (GO:0016887);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","ABC-2 type transporter","ABC transporter G family member 36 OS=Oryza sativa subsp. indica OX=39946 GN=ABCG36 PE=2 SV=1","V","Defense mechanisms","hypothetical protein GOBAR_AA03233 [Gossypium barbadense]"]
["c39835.graph_c1","[H]","Coenzyme transport and metabolism ","Cellular Component: cytosol (GO:0005829);; Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777);; Cellular Component: molybdopterin synthase complex (GO:0019008);; Molecular Function: molybdopterin synthase activity (GO:0030366);; Biological Process: molybdopterin cofactor biosynthetic process (GO:0032324);; ","K03635|7.10331e-102|tcc:TCM_040974|K03635 molybdopterin synthase catalytic subunit [EC:2.8.1.12] | (RefSeq) Molybdopterin biosynthesis MoaE family protein","[H]","Coenzyme transport and metabolism ","MoaE protein","Molybdopterin synthase catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=MOCS2 PE=2 SV=1","H","Coenzyme transport and metabolism","molybdopterin synthase catalytic subunit-like [Durio zibethinus] "]
["c65309.graph_c0","--","--","--","--","--","--","--","--","--","--","Protein FAR1-RELATED SEQUENCE 3 [Gossypium arboreum]"]
["c25536.graph_c0","--","--","--","K16277|6.17613e-111|gra:105770238|K16277 E3 ubiquitin-protein ligase DRIP [EC:2.3.2.27] | (RefSeq) E3 ubiquitin protein ligase DRIP1-like","[S]","Function unknown ","Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger)","E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1","S","Function unknown","PREDICTED: E3 ubiquitin protein ligase DRIP1-like [Gossypium hirsutum]"]
["c45588.graph_c3","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies)","Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana OX=3702 GN=At1g60630 PE=2 SV=1","T","Signal transduction mechanisms","probable inactive receptor kinase At2g26730 [Durio zibethinus]"]
["c93623.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: catalytic activity (GO:0003824);; ","K01785|6.94361e-20|cvr:CHLNCDRAFT_132896|K01785 aldose 1-epimerase [EC:5.1.3.3] | (RefSeq) hypothetical protein","[G]","Carbohydrate transport and metabolism ","Aldose 1-epimerase","--","G","Carbohydrate transport and metabolism","aldose-1-epimerase, putative, partial [Ricinus communis]"]
["c52512.graph_c0","--","--","--","--","--","--","--","--","--","--","caffeoylshikimate esterase-like [Durio zibethinus]"]
["c878.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Molecular Function: hydrolase activity (GO:0016787);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02984|3.16266e-52|csl:COCSUDRAFT_27621|K02984 small subunit ribosomal protein S3Ae | (RefSeq) ribosomal protein S3Ae","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal S3Ae family","40S ribosomal protein S3a OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_168484 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","ribosomal protein S3Ae [Helicosporidium sp. ATCC 50920]"]
["c82904.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Biological Process: glucose import (GO:0046323);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","[R]","General function prediction only ","Sugar (and other) transporter","Probable inositol transporter 3 OS=Arabidopsis thaliana OX=3702 GN=INT3 PE=2 SV=1","G","Carbohydrate transport and metabolism","putative monosaccharide transporter [Kockovaella imperatae] "]
["c11120.graph_c0","--","--","--","K16904|8.23605e-08|gra:105803336|K16904 dCTP diphosphatase [EC:3.6.1.12] | (RefSeq) dCTP pyrophosphatase 1-like","--","--","--","--","S","Function unknown","PREDICTED: dCTP pyrophosphatase 1-like [Gossypium hirsutum] "]
["c48229.graph_c1","--","--","--","--","[GMW]","--","Exostosin family","Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana OX=3702 GN=At5g03795 PE=3 SV=2","S","Function unknown","LOW QUALITY PROTEIN: probable glycosyltransferase At5g03795 [Durio zibethinus]"]
["c45892.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: metabolic process (GO:0008152);; Molecular Function: polysaccharide binding (GO:0030247);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Glycosyl hydrolases family 17;; X8 domain;; Glycosyl hydrolases family 17","Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum OX=4565 GN=GLC1 PE=2 SV=1","G","Carbohydrate transport and metabolism","glucan endo-1,3-beta-glucosidase-like [Durio zibethinus]"]
["c90141.graph_c0","--","--","Molecular Function: serine-type carboxypeptidase activity (GO:0004185);; Biological Process: proteolysis (GO:0006508);; ","K16296|9.24017e-42|fve:101295473|K16296 serine carboxypeptidase-like clade I [EC:3.4.16.-] | (RefSeq) serine carboxypeptidase-like 20","[OE]","--","--","Serine carboxypeptidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP1 PE=2 SV=1","E","Amino acid transport and metabolism","PREDICTED: serine carboxypeptidase-like 20 [Fragaria vesca subsp. vesca]"]
["c80713.graph_c0","--","--","--","--","[IG]","--","Saposin-like type B, region 2;; Saposin-like type B, region 1","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c59324.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105762425 [Gossypium raimondii] "]
["c50542.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","--","--","PREDICTED: protein TonB [Theobroma cacao] "]
["c83228.graph_c0","--","--","--","K13912|8.29525e-08|cvr:CHLNCDRAFT_6829|K13912 deleted in malignant brain tumors 1 protein | (RefSeq) hypothetical protein","--","--","Scavenger receptor cysteine-rich domain","--","S","Function unknown","hypothetical protein GUITHDRAFT_71128, partial [Guillardia theta CCMP2712] "]
["c47385.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_AA17580 [Gossypium barbadense]"]
["c86423.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K04733|8.7802e-39|tcc:TCM_018903|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) Malectin/receptor-like protein kinase family protein, putative","[T]","Signal transduction mechanisms ","--","Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA13463 [Gossypium barbadense]"]
["c52362.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein B456_004G225300 [Gossypium raimondii]"]
["c1045.graph_c0","--","--","--","--","[S]","Function unknown ","Eukaryotic protein of unknown function (DUF866)","--","S","Function unknown","hypothetical protein B456_009G047300 [Gossypium raimondii]"]
["c35538.graph_c3","--","--","Molecular Function: mechanically-gated ion channel activity (GO:0008381);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: ion transmembrane transport (GO:0034220);; ","--","--","--","--","Piezo-type mechanosensitive ion channel homolog OS=Arabidopsis thaliana OX=3702 GN=At2g48060/At2g48040/At2g48050 PE=2 SV=1","S","Function unknown","PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X3 [Gossypium hirsutum]"]
["c63854.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat","Receptor kinase-like protein Xa21 OS=Oryza sativa subsp. japonica OX=39947 GN=XA21 PE=1 SV=1","S","Function unknown","PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium hirsutum] "]
["c71382.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: mRNA binding (GO:0003729);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: cell wall (GO:0005618);; Cellular Component: nucleus (GO:0005634);; Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: translation (GO:0006412);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: membrane (GO:0016020);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02981|6.86753e-34|aip:107631803|K02981 small subunit ribosomal protein S2e | (RefSeq) 40S ribosomal protein S2-4-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S5, C-terminal domain","40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","40S ribosomal protein S2-4-like [Lactuca sativa] "]
["c38087.graph_c0","--","--","--","K16578|1.25444e-18|rcu:8262781|K16578 CLIP-associating protein 1/2 | (RefSeq) CLIP-associated protein","--","--","--","CLIP-associated protein OS=Arabidopsis thaliana OX=3702 GN=CLASP PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","CLIP-associated protein B2 [Gossypium hirsutum]"]
["c972.graph_c1","--","--","Biological Process: response to stress (GO:0006950);; ","--","--","--","ABA/WDS induced protein","--","S","Function unknown","PREDICTED: abscisic stress-ripening protein 3 [Oryza sativa Japonica Group] "]
["c91004.graph_c0","--","--","Biological Process: spliceosomal complex assembly (GO:0000245);; Cellular Component: spliceosomal complex (GO:0005681);; Cellular Component: U5 snRNP (GO:0005682);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: U4/U6 x U5 tri-snRNP complex (GO:0046540);; ","K12859|1.5485e-51|fve:101306018|K12859 U5 snRNP protein, DIM1 family | (RefSeq) thioredoxin-like protein YLS8","[AD]","--","Mitosis protein DIM1;; Thioredoxin","Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana OX=3702 GN=YLS8 PE=2 SV=1","S","Function unknown","hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis]"]
["c30118.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","PHD-finger;; Ring finger domain;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger)","Uncharacterized protein At4g10930 OS=Arabidopsis thaliana OX=3702 GN=At4g10930 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein At4g10930-like isoform X1 [Gossypium arboreum] "]
["c30507.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: transcription factor bHLH95 [Theobroma cacao] "]
["c45950.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: auxin-activated signaling pathway (GO:0009734);; ","K14486|2.00853e-150|gra:105777013|K14486 auxin response factor | (RefSeq) auxin response factor 1","--","--","Auxin response factor;; AUX/IAA family","Auxin response factor 1 OS=Arabidopsis thaliana OX=3702 GN=ARF1 PE=1 SV=2","K","Transcription","Auxin response factor 1 -like protein [Gossypium arboreum]"]
["c64079.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","K14411|9.08813e-17|tcc:TCM_002303|K14411 RNA-binding protein Musashi | (RefSeq) HnRNP isoform 1","[A]","RNA processing and modification ","--","RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1","S","Function unknown","RNA-binding family protein isoform 3 [Theobroma cacao]"]
["c22210.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD33801 [Gossypium barbadense]"]
["c90394.graph_c0","--","--","--","K03327|4.02087e-07|tcc:TCM_025768|K03327 multidrug resistance protein, MATE family | (RefSeq) MATE efflux family protein","--","--","--","--","--","--","PREDICTED: protein DETOXIFICATION 21 [Theobroma cacao] "]
["c94488.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: cytosol (GO:0005829);; Cellular Component: actin filament (GO:0005884);; Cellular Component: F-actin capping protein complex (GO:0008290);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: filamentous growth (GO:0030447);; Cellular Component: actin cortical patch (GO:0030479);; Cellular Component: cell division site (GO:0032153);; Cellular Component: mating projection tip (GO:0043332);; Molecular Function: actin filament binding (GO:0051015);; Biological Process: barbed-end actin filament capping (GO:0051016);; Cellular Component: cell tip (GO:0051286);; Biological Process: mitotic actomyosin contractile ring contraction (GO:1902404);; ","K10365|2.77899e-25|smo:SELMODRAFT_106718|K10365 capping protein (actin filament) muscle Z-line, beta | (RefSeq) hypothetical protein","[Z]","Cytoskeleton ","F-actin capping protein, beta subunit","Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g71790 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","F-actin capping protein beta subunit [Coemansia reversa NRRL 1564]"]
["c73788.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: phosphoric ester hydrolase activity (GO:0042578);; ","--","[I]","Lipid transport and metabolism ","SacI homology domain","Probable phosphoinositide phosphatase SAC9 OS=Arabidopsis thaliana OX=3702 GN=SAC9 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA17174 [Gossypium barbadense]"]
["c49495.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: translation initiation factor activity (GO:0003743);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Biological Process: translational initiation (GO:0006413);; ","K03257|0|gra:105767359|K03257 translation initiation factor 4A | (RefSeq) eukaryotic initiation factor 4A-10","[J]","Translation, ribosomal structure and biogenesis ","DEAD/DEAH box helicase;; Helicase conserved C-terminal domain;; Type III restriction enzyme, res subunit","Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","L","Replication, recombination and repair","PREDICTED: eukaryotic initiation factor 4A-10 [Gossypium raimondii] "]
["c42837.graph_c0","--","--","Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; ","K14016|0|gra:105780351|K14016 ubiquitin fusion degradation protein 1 | (RefSeq) ubiquitin fusion degradation protein 1 homolog","[O]","Posttranslational modification, protein turnover, chaperones ","Ubiquitin fusion degradation protein UFD1","Fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FBA2 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: ubiquitin fusion degradation protein 1 homolog isoform X2 [Gossypium raimondii] "]
["c23023.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","--","--","--","hypothetical protein B456_007G194400 [Gossypium raimondii]"]
["c37650.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: fasciclin-like arabinogalactan protein 19 [Gossypium hirsutum]"]
["c67041.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: acetate-CoA ligase activity (GO:0003987);; Molecular Function: metalloendopeptidase activity (GO:0004222);; Molecular Function: ATP binding (GO:0005524);; Biological Process: proteolysis (GO:0006508);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: AMP binding (GO:0016208);; Biological Process: acetyl-CoA biosynthetic process from acetate (GO:0019427);; ","K01895|7.7088e-09|gsl:Gasu_28170|K01895 acetyl-CoA synthetase [EC:6.2.1.1] | (RefSeq) acetyl-CoA synthetase","[I]","Lipid transport and metabolism ","Acetyl-coenzyme A synthetase N-terminus","--","I","Lipid transport and metabolism","acetate--CoA ligase [Stagonospora sp. SRC1lsM3a]"]
["c18515.graph_c1","--","--","Molecular Function: actin binding (GO:0003779);; Cellular Component: actin cytoskeleton (GO:0015629);; Biological Process: actin filament depolymerization (GO:0030042);; ","K05765|5.51742e-51|gra:105797971|K05765 cofilin | (RefSeq) actin-depolymerizing factor-like","[Z]","Cytoskeleton ","Cofilin/tropomyosin-type actin-binding protein","Actin-depolymerizing factor 7 OS=Arabidopsis thaliana OX=3702 GN=ADF7 PE=2 SV=1","S","Function unknown","PREDICTED: actin-depolymerizing factor-like [Gossypium raimondii]"]
["c40202.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K02218|1.77677e-147|tcc:TCM_029074|K02218 casein kinase 1 [EC:2.7.11.1] | (RefSeq) Casein kinase 1-like protein 2","[T]","Signal transduction mechanisms ","--","Casein kinase 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=CKL2 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein F383_30273 [Gossypium arboreum]"]
["c28603.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","--","--","--","--","--","--","--","PREDICTED: protein kinase APK1A, chloroplastic-like [Gossypium hirsutum]"]
["c38676.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein JCGZ_06007 [Jatropha curcas]"]
["c50783.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; ","--","--","--","Isochorismatase family","Nicotinamidase 1 OS=Arabidopsis thaliana OX=3702 GN=NIC1 PE=1 SV=1","S","Function unknown","nicotinamidase 1-like [Durio zibethinus]"]
["c44509.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[I]","Lipid transport and metabolism ","Plasma-membrane choline transporter","--","S","Function unknown","PREDICTED: CTL-like protein DDB_G0288717 [Theobroma cacao]"]
["c25037.graph_c0","[GI]","Carbohydrate transport and metabolism ;; Lipid transport and metabolism ","Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788);; ","K01051|3.27858e-165|jcu:105644096|K01051 pectinesterase [EC:3.1.1.11] | (RefSeq) pectinesterase 31-like","--","--","Pectinesterase","Pectinesterase 31 OS=Arabidopsis thaliana OX=3702 GN=PME31 PE=1 SV=1","G","Carbohydrate transport and metabolism","pectinesterase 31 [Jatropha curcas] "]
["c34229.graph_c0","--","--","--","--","--","--","Sieve element occlusion N-terminus","Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1","--","--","PREDICTED: uncharacterized protein LOC101298064 [Fragaria vesca subsp. vesca]"]
["c35786.graph_c0","--","--","Molecular Function: peroxidase activity (GO:0004601);; Cellular Component: extracellular region (GO:0005576);; Biological Process: response to oxidative stress (GO:0006979);; Molecular Function: heme binding (GO:0020037);; Biological Process: hydrogen peroxide catabolic process (GO:0042744);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; Biological Process: cellular oxidant detoxification (GO:0098869);; ","K00430|1.08116e-145|gra:105795062|K00430 peroxidase [EC:1.11.1.7] | (RefSeq) POD2; cationic peroxidase 2-like","--","--","Peroxidase;; Peroxidase","Peroxidase N1 OS=Nicotiana tabacum OX=4097 GN=poxN1 PE=1 SV=1","I","Lipid transport and metabolism","bacterial-induced peroxidase [Gossypium davidsonii] "]
["c27317.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity (GO:0004420);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: coenzyme A metabolic process (GO:0015936);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: triterpenoid biosynthetic process (GO:0016104);; Biological Process: sterol biosynthetic process (GO:0016126);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00021|7.65793e-93|spen:107013488|K00021 hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34] | (RefSeq) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2","[I]","Lipid transport and metabolism ","Hydroxymethylglutaryl-coenzyme A reductase","3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Nicotiana sylvestris OX=4096 GN=HMGR PE=2 SV=1","I","Lipid transport and metabolism","hydroxy-methyl-glutaryl-coenzyme A reductase, partial [Bacopa monnieri]"]
["c30279.graph_c0","--","--","--","--","--","--","F-box domain;; F-box-like","F-box protein At3g12350 OS=Arabidopsis thaliana OX=3702 GN=At3g12350 PE=2 SV=1","S","Function unknown","PREDICTED: F-box protein At3g12350-like [Gossypium hirsutum]"]
["c34272.graph_c0","--","--","Cellular Component: peroxisome (GO:0005777);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: fatty acid biosynthetic process (GO:0006633);; Biological Process: peroxisome organization (GO:0007031);; Cellular Component: integral component of membrane (GO:0016021);; ","K13335|1.37464e-15|gra:105797459|K13335 peroxin-16 | (RefSeq) peroxisome biogenesis protein 16","--","--","Peroxisomal membrane protein (Pex16)","Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana OX=3702 GN=PEX16 PE=1 SV=1","S","Function unknown","hypothetical protein CUMW_177660, partial [Citrus unshiu]"]
["c44274.graph_c0","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","--","K09755|0|tcc:TCM_000258|K09755 ferulate-5-hydroxylase [EC:1.14.-.-] | (RefSeq) Ferulic acid 5-hydroxylase 1","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450","Cytochrome P450 84A1 OS=Arabidopsis thaliana OX=3702 GN=CYP84A1 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","putative ferulate 5-hydroxylase [Hibiscus cannabinus]"]
["c89203.graph_c0","--","--","--","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c35885.graph_c0","[V]","Defense mechanisms ","Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of abscisic acid-activated signaling pathway (GO:0009787);; Biological Process: maintenance of seed dormancy (GO:0010231);; Molecular Function: abscisic acid binding (GO:0010427);; ","--","[V]","Defense mechanisms ","Lanthionine synthetase C-like protein;; Lanthionine synthetase C-like protein;; Lanthionine synthetase C-like protein","LanC-like protein GCR2 OS=Arabidopsis thaliana OX=3702 GN=GCR2 PE=1 SV=1","S","Function unknown","LanC-like protein [Trema orientalis]"]
["c48573.graph_c0","--","--","--","K20456|0|gra:105794579|K20456 oxysterol-binding protein 1 | (RefSeq) oxysterol-binding protein-related protein 1D","[I]","Lipid transport and metabolism ","Pleckstrin homology domain;; Oxysterol-binding protein;; PH domain;; Oxysterol-binding protein;; Oxysterol-binding protein","Oxysterol-binding protein-related protein 1D OS=Arabidopsis thaliana OX=3702 GN=ORP1D PE=2 SV=1","S","Function unknown","hypothetical protein B456_005G174900 [Gossypium raimondii]"]
["c29935.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","RNA-processing protein, HAT helix [Corchorus olitorius]"]
["c58623.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111289979 [Durio zibethinus]"]
["c8830.graph_c1","--","--","Cellular Component: endomembrane system (GO:0012505);; Cellular Component: membrane (GO:0016020);; Cellular Component: membrane-bounded organelle (GO:0043227);; Cellular Component: intracellular organelle (GO:0043229);; Biological Process: positive regulation of GTPase activity (GO:0043547);; Cellular Component: cytoplasmic part (GO:0044444);; ","K12486|4.16733e-16|gra:105782181|K12486 stromal membrane-associated protein | (RefSeq) probable ADP-ribosylation factor GTPase-activating protein AGD5","--","--","--","--","--","--","hypothetical protein B456_013G166300 [Gossypium raimondii]"]
["c51867.graph_c0","--","--","--","--","--","--","Sieve element occlusion N-terminus;; Sieve element occlusion C-terminus","Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana OX=3702 GN=SEOB PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105788533 [Gossypium raimondii] "]
["c60398.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; ","--","[IR]","--","--","ABC transporter D family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCC1 PE=1 SV=1","S","Function unknown","PREDICTED: ABC transporter D family member 1-like [Gossypium hirsutum]"]
["c64777.graph_c0","--","--","--","K02936|6.45828e-32|gsl:Gasu_19660|K02936 large subunit ribosomal protein L7Ae | (RefSeq) 60S ribosomal protein L7Ae isoform 1","[J]","Translation, ribosomal structure and biogenesis ","--","60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","L30e-like protein [Hesseltinella vesiculosa]"]
["c44063.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","K13162|8.54032e-27|gra:105779188|K13162 poly(rC)-binding protein 2/3/4 | (RefSeq) KH domain-containing protein At4g18375-like","[AR]","--","KH domain","KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1","S","Function unknown","PREDICTED: KH domain-containing protein At4g18375-like [Gossypium raimondii] "]
["c46459.graph_c1","[C]","Energy production and conversion ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: DNA-directed 5'-3' RNA polymerase activity (GO:0003899);; Biological Process: transcription, DNA-templated (GO:0006351);; Cellular Component: chloroplast (GO:0009507);; Molecular Function: protein dimerization activity (GO:0046983);; ","K03040|0|gra:11538602|K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] | (RefSeq) rpoA, A6772_cp054; RNA polymerase alpha subunit","--","--","Bacterial RNA polymerase, alpha chain C terminal domain;; RNA polymerase Rpb3/RpoA insert domain;; RNA polymerase Rpb3/Rpb11 dimerisation domain;; Bacterial RNA polymerase, alpha chain C terminal domain;; RNA polymerase Rpb3/RpoA insert domain;; RNA polymerase Rpb3/Rpb11 dimerisation domain;; Cytochrome b/b6/petB;; Cytochrome b(N-terminal)/b6/petB;; Cytochrome b/b6/petB;; Cytochrome b(N-terminal)/b6/petB;; Cytochrome b(C-terminal)/b6/petD;; Cytochrome b(C-terminal)/b6/petD;; Ribosomal protein S11;; Ribosomal protein S11;; Photosystem II 10 kDa phosphoprotein;; Photosystem II 10 kDa phosphoprotein","DNA-directed RNA polymerase subunit alpha OS=Gossypium hirsutum OX=3635 GN=rpoA PE=3 SV=1","K","Transcription","RNA polymerase alpha subunit (chloroplast) [Abelmoschus esculentus] "]
["c41026.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: cellular bud neck (GO:0005935);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","--","--","--","Glucose-repressible protein Grg1","--","S","Function unknown","hypothetical protein IQ06DRAFT_298727 [Stagonospora sp. SRC1lsM3a]"]
["c39383.graph_c0","--","--","Molecular Function: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702);; Biological Process: oxylipin biosynthetic process (GO:0031408);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00454|0|tcc:TCM_040483|K00454 lipoxygenase [EC:1.13.11.12] | (RefSeq) Lipoxygenase","--","--","Lipoxygenase;; PLAT/LH2 domain","Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX2.1 PE=1 SV=1","S","Function unknown","Lipoxygenase [Theobroma cacao]"]
["c47890.graph_c1","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain;; Carbohydrate-binding protein of the ER;; Di-glucose binding within endoplasmic reticulum","Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana OX=3702 GN=ANX2 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: receptor-like protein kinase ANXUR2 [Gossypium raimondii]"]
["c8981.graph_c0","--","--","--","--","--","--","PB1 domain","--","S","Function unknown","uncharacterized protein LOC111289839 isoform X1 [Durio zibethinus] "]
["c27449.graph_c1","[L]","Replication, recombination and repair ","Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA repair (GO:0006281);; Biological Process: DNA recombination (GO:0006310);; Molecular Function: DNA-dependent ATPase activity (GO:0008094);; ","K03553|2.97777e-28|gra:105783661|K03553 recombination protein RecA | (RefSeq) DNA repair protein recA homolog 3, mitochondrial-like","[L]","Replication, recombination and repair ","recA bacterial DNA recombination protein","DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2","L","Replication, recombination and repair","PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Gossypium hirsutum]"]
["c77722.graph_c0","--","--","Molecular Function: ATP:ADP antiporter activity (GO:0005471);; Molecular Function: ATP binding (GO:0005524);; Biological Process: ADP transport (GO:0015866);; Biological Process: ATP transport (GO:0015867);; Cellular Component: integral component of membrane (GO:0016021);; ","K03301|8.35615e-20|gra:105777622|K03301 ATP:ADP antiporter, AAA family | (RefSeq) plastidic ATP/ADP-transporter-like","--","--","--","Plastidic ATP/ADP-transporter OS=Solanum tuberosum OX=4113 PE=2 SV=2","C","Energy production and conversion","plastidic atp/adp-transporter [Quercus suber]"]
["c62686.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: fatty-acyl-CoA binding (GO:0000062);; Biological Process: transport (GO:0006810);; Molecular Function: lipid binding (GO:0008289);; ","K08762|3.78379e-21|fve:101307591|K08762 diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein) | (RefSeq) acyl-CoA-binding protein","[I]","Lipid transport and metabolism ","Acyl CoA binding protein","Acyl-CoA-binding protein OS=Ricinus communis OX=3988 PE=3 SV=1","I","Lipid transport and metabolism","PREDICTED: acyl-CoA-binding protein [Fragaria vesca subsp. vesca]"]
["c43460.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108456463 [Gossypium arboreum]"]
["c34443.graph_c1","--","--","--","--","[S]","Function unknown ","PPPDE putative peptidase domain","DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV=1","S","Function unknown","deSI-like protein At4g17486 isoform X2 [Hevea brasiliensis]"]
["c39487.graph_c0","--","--","Molecular Function: catalytic activity (GO:0003824);; ","K19042|1.84408e-86|gra:105785921|K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] | (RefSeq) probable BOI-related E3 ubiquitin-protein ligase 3","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc finger, C3HC4 type (RING finger)","Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana OX=3702 GN=BRG3 PE=1 SV=1","S","Function unknown","PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Gossypium hirsutum] "]
["c39208.graph_c0","--","--","--","--","[K]","Transcription ","Endonuclease/Exonuclease/phosphatase family","Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CCR4-5 PE=2 SV=2","A","RNA processing and modification","PREDICTED: carbon catabolite repressor protein 4 homolog 5 isoform X2 [Gossypium arboreum]"]
["c27214.graph_c2","[EF]","Amino acid transport and metabolism ;; Nucleotide transport and metabolism ","Molecular Function: transaminase activity (GO:0008483);; ","K00830|1.09828e-73|osa:4345962|K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] | (RefSeq) OJ1345_D02.38, OJ1506_F01.10; serine--glyoxylate aminotransferase","[R]","General function prediction only ","Aminotransferase class-V","Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana OX=3702 GN=AGT1 PE=1 SV=2","E","Amino acid transport and metabolism","serine-glyoxylate aminotransferase, partial [Oryza sativa Indica Group]"]
["c34388.graph_c1","--","--","Cellular Component: cytoplasm (GO:0005737);; Molecular Function: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity (GO:0033925);; ","--","[R]","General function prediction only ","--","Cytosolic endo-beta-N-acetylglucosaminidase 2 OS=Arabidopsis thaliana OX=3702 GN=ENGASE2 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase 1-like [Gossypium hirsutum]"]
["c48027.graph_c0","--","--","--","K20642|0|gra:105797242|K20642 Rho GTPase-activating protein 22/24/25 | (RefSeq) rho GTPase-activating protein REN1-like","[T]","Signal transduction mechanisms ","RhoGAP domain;; PH domain","Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2","S","Function unknown","rho GTPase-activating protein REN1-like isoform X3 [Durio zibethinus]"]
["c48780.graph_c0","--","--","--","--","--","--","GRAS domain family","Scarecrow-like protein 28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1","K","Transcription","GRAS family transcription factor [Theobroma cacao]"]
["c79652.graph_c0","[E]","Amino acid transport and metabolism ","--","--","--","--","Tryptophan halogenase","--","S","Function unknown","conserved hypothetical protein, partial [Ricinus communis]"]
["c29979.graph_c2","--","--","Molecular Function: binding (GO:0005488);; ","--","--","--","--","Transcription factor GLABRA 3 OS=Arabidopsis thaliana OX=3702 GN=GL3 PE=1 SV=1","K","Transcription","transcription factor EGL1-like isoform X2 [Durio zibethinus]"]
["c77489.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c45521.graph_c1","--","--","Molecular Function: acyl binding (GO:0000035);; Cellular Component: endosome (GO:0005768);; Cellular Component: trans-Golgi network (GO:0005802);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: cell tip growth (GO:0009932);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: protein-cysteine S-palmitoyltransferase activity (GO:0019706);; ","K20032|3.65738e-14|tcc:TCM_038201|K20032 palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] | (RefSeq) Ankyrin repeat family protein with DHHC zinc finger domain isoform 1","--","--","--","--","S","Function unknown","protein S-acyltransferase 24 isoform X2 [Herrania umbratica]"]
["c57049.graph_c0","--","--","--","K08496|3.28118e-12|cit:102609665|K08496 golgi SNAP receptor complex member 2 | (RefSeq) membrin-11","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Membrin-11 OS=Arabidopsis thaliana OX=3702 GN=MEMB11 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein CISIN_1g027099mg [Citrus sinensis]"]
["c39205.graph_c1","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K02218|1.08981e-73|gra:105783248|K02218 casein kinase 1 [EC:2.7.11.1] | (RefSeq) casein kinase I isoform delta-like","[T]","Signal transduction mechanisms ","--","Casein kinase 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=CKL1 PE=2 SV=2","T","Signal transduction mechanisms","PREDICTED: casein kinase I isoform delta-like [Gossypium raimondii] "]
["c36926.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","--","[R]","General function prediction only ","Ankyrin repeat;; Ankyrin repeat;; Ankyrin repeats (3 copies);; Ankyrin repeats (many copies)","Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana OX=3702 GN=At5g58620 PE=2 SV=1","S","Function unknown","PREDICTED: zinc finger CCCH domain-containing protein 66-like [Gossypium hirsutum]"]
["c24683.graph_c0","--","--","Molecular Function: protein serine/threonine phosphatase activity (GO:0004722);; Biological Process: protein dephosphorylation (GO:0006470);; Molecular Function: metal ion binding (GO:0046872);; ","K01102|3.10795e-18|tcc:TCM_024910|K01102 pyruvate dehydrogenase phosphatase [EC:3.1.3.43] | (RefSeq) Phosphatase 2C family protein","[T]","Signal transduction mechanisms ","--","Probable protein phosphatase 2C 68 OS=Arabidopsis thaliana OX=3702 GN=At5g06750 PE=2 SV=1","T","Signal transduction mechanisms","probable protein phosphatase 2C 25 [Herrania umbratica]"]
["c71785.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD24805 [Gossypium barbadense]"]
["c88157.graph_c0","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Got1/Sft2-like family","--","U","Intracellular trafficking, secretion, and vesicular transport","SFT2-domain-containing protein [Cylindrobasidium torrendii FP15055 ss-10]"]
["c43670.graph_c2","--","--","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Cellular Component: integral component of membrane (GO:0016021);; ","K07897|1.87332e-14|pop:POPTR_0005s08730g|K07897 Ras-related protein Rab-7A | (RefSeq) POPTRDRAFT_862060; hypothetical protein","[R]","General function prediction only ","--","Ras-related protein RABG3e OS=Arabidopsis thaliana OX=3702 GN=RABG3E PE=2 SV=1","S","Function unknown","Small GTPase superfamily, Rho type [Parasponia andersonii]"]
["c18410.graph_c1","--","--","Molecular Function: inositol-3-phosphate synthase activity (GO:0004512);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: inositol biosynthetic process (GO:0006021);; Biological Process: phospholipid biosynthetic process (GO:0008654);; ","K01858|2.66037e-86|tcc:TCM_001164|K01858 myo-inositol-1-phosphate synthase [EC:5.5.1.4] | (RefSeq) Myo-inositol-1-phosphate synthase 2","[I]","Lipid transport and metabolism ","Myo-inositol-1-phosphate synthase","Inositol-3-phosphate synthase OS=Citrus paradisi OX=37656 PE=3 SV=1","I","Lipid transport and metabolism","Myo-inositol-1-phosphate synthase [Corchorus capsularis]"]
["c29132.graph_c0","--","--","Cellular Component: chloroplast (GO:0009507);; Biological Process: chloroplast organization (GO:0009658);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ligase activity (GO:0016874);; ","--","--","--","Protein of unknown function (DUF3493)","Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1","S","Function unknown","PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium arboreum] "]
["c79902.graph_c0","--","--","Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014);; Molecular Function: protein binding (GO:0005515);; Cellular Component: cytosol (GO:0005829);; Biological Process: S-adenosylmethioninamine biosynthetic process (GO:0006557);; Biological Process: spermine biosynthetic process (GO:0006597);; Biological Process: spermidine biosynthetic process (GO:0008295);; Biological Process: gene silencing (GO:0016458);; Biological Process: viral genome replication (GO:0019079);; Biological Process: plant organ development (GO:0099402);; ","K01611|1.28811e-96|crb:CARUB_v10015160mg|K01611 S-adenosylmethionine decarboxylase [EC:4.1.1.50] | (RefSeq) hypothetical protein","[T]","Signal transduction mechanisms ","Adenosylmethionine decarboxylase","S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana OX=3702 GN=SAMDC1 PE=1 SV=2","E","Amino acid transport and metabolism","hypothetical protein CARUB_v10015160mg [Capsella rubella]"]
["c59690.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG1 PE=1 SV=1","S","Function unknown","PREDICTED: elicitor-responsive protein 1-like [Gossypium hirsutum]"]
["c40759.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02919|2.69472e-19|gra:105772954|K02919 large subunit ribosomal protein L36 | (RefSeq) uncharacterized LOC105772954","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107901301 [Gossypium hirsutum]"]
["c44202.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD30137 [Gossypium barbadense]"]
["c90482.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: calcium-transporting ATPase activity (GO:0005388);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: calcium ion transmembrane transport (GO:0070588);; ","K01537|8.69246e-51|gra:105790481|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) calcium-transporting ATPase 12, plasma membrane-type-like","[P]","Inorganic ion transport and metabolism ","E1-E2 ATPase","Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=ACA12 PE=2 SV=1","P","Inorganic ion transport and metabolism","hypothetical protein GOBAR_AA39850 [Gossypium barbadense]"]
["c49349.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105776632 isoform X5 [Gossypium raimondii] "]
["c88592.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Spectrin repeat","--","Z","Cytoskeleton","--"]
["c64712.graph_c0","--","--","--","--","--","--","Thylakoid soluble phosphoprotein TSP9","--","S","Function unknown","PREDICTED: uncharacterized protein LOC101297818 [Fragaria vesca subsp. vesca]"]
["c3794.graph_c0","--","--","--","--","--","--","Golgi 4-transmembrane spanning transporter","--","U","Intracellular trafficking, secretion, and vesicular transport","--"]
["c30484.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: acid phosphatase activity (GO:0003993);; Biological Process: dephosphorylation (GO:0016311);; Molecular Function: metal ion binding (GO:0046872);; ","--","[G]","Carbohydrate transport and metabolism ","Iron/zinc purple acid phosphatase-like protein C;; Calcineurin-like phosphoesterase","Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana OX=3702 GN=PAP27 PE=2 SV=1","S","Function unknown","PREDICTED: probable inactive purple acid phosphatase 27 [Gossypium arboreum] "]
["c44602.graph_c0","[E]","Amino acid transport and metabolism ","Biological Process: urea cycle (GO:0000050);; Biological Process: argininosuccinate metabolic process (GO:0000053);; Molecular Function: argininosuccinate synthase activity (GO:0004055);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: arginine biosynthetic process (GO:0006526);; ","K01940|0|tcc:TCM_014608|K01940 argininosuccinate synthase [EC:6.3.4.5] | (RefSeq) Arginosuccinate synthase family isoform 1","[E]","Amino acid transport and metabolism ","Arginosuccinate synthase","Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24830 PE=1 SV=3","E","Amino acid transport and metabolism","argininosuccinate synthase, chloroplastic-like [Durio zibethinus]"]
["c47875.graph_c0","--","--","--","--","--","--","gag-polyprotein putative aspartyl protease;; Aspartyl protease;; Aspartyl protease;; Retroviral aspartyl protease","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]"]
["c87871.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: plastid (GO:0009536);; Cellular Component: viral nucleocapsid (GO:0019013);; Cellular Component: intracellular ribonucleoprotein complex (GO:0030529);; ","--","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1","S","Function unknown","PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Oryza sativa Japonica Group] "]
["c48478.graph_c2","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Molecular Function: ATPase activity (GO:0016887);; Biological Process: protein metabolic process (GO:0019538);; Biological Process: protein hexamerization (GO:0034214);; Molecular Function: protein homodimerization activity (GO:0042803);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","AAA domain (Cdc48 subfamily);; Clp amino terminal domain, pathogenicity island component;; ATPase family associated with various cellular activities (AAA);; AAA domain (dynein-related subfamily);; AAA ATPase domain;; AAA domain;; Sigma-54 interaction domain;; IstB-like ATP binding protein;; C-terminal, D2-small domain, of ClpB protein;; AAA domain (Cdc48 subfamily)","Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPD PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: chaperone protein ClpD, chloroplastic [Theobroma cacao]"]
["c90435.graph_c0","--","--","--","--","[S]","Function unknown ","SH3-binding, glutamic acid-rich protein","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c9399.graph_c0","[IQ]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ","Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to cytokinin (GO:0009735);; Biological Process: positive regulation of seed germination (GO:0010030);; Biological Process: seed coat development (GO:0010214);; Biological Process: oxalate catabolic process (GO:0033611);; Cellular Component: apoplast (GO:0048046);; Molecular Function: oxalate-CoA ligase activity (GO:0050203);; Biological Process: defense response to fungus (GO:0050832);; ","--","[I]","Lipid transport and metabolism ","AMP-binding enzyme","Oxalate--CoA ligase OS=Arabidopsis thaliana OX=3702 GN=AAE3 PE=1 SV=1","IQ","--","hypothetical protein B456_004G210700 [Gossypium raimondii]"]
["c75731.graph_c0","[V]","Defense mechanisms ","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: integral component of membrane (GO:0016021);; ","K03327|1.42393e-74|gra:105798502|K03327 multidrug resistance protein, MATE family | (RefSeq) MATE efflux family protein LAL5","[R]","General function prediction only ","MatE","Protein DETOXIFICATION 49 OS=Arabidopsis thaliana OX=3702 GN=DTX49 PE=2 SV=1","V","Defense mechanisms","PREDICTED: protein DETOXIFICATION 49-like [Gossypium arboreum]"]
["c8277.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: protein kinase activity (GO:0004672);; Biological Process: phosphorylation (GO:0016310);; ","--","[T]","Signal transduction mechanisms ","--","--","--","--","PREDICTED: probable serine/threonine-protein kinase DDB_G0284251 [Gossypium hirsutum]"]
["c88104.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: ATP biosynthetic process (GO:0006754);; Molecular Function: hydrogen-exporting ATPase activity, phosphorylative mechanism (GO:0008553);; Cellular Component: intracellular membrane-bounded organelle (GO:0043231);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: regulation of intracellular pH (GO:0051453);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","K01535|7.73522e-50|spen:107026386|K01535 H+-transporting ATPase [EC:3.6.3.6] | (RefSeq) ATPase 8, plasma membrane-type-like","[P]","Inorganic ion transport and metabolism ","Cation transporter/ATPase, N-terminus;; E1-E2 ATPase","ATPase 5, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=AHA5 PE=3 SV=3","P","Inorganic ion transport and metabolism","plasma-membrane proton-efflux P-type ATPase [Kwoniella mangroviensis CBS 10435] "]
["c6313.graph_c0","--","--","--","--","--","--","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC108486094 isoform X1 [Gossypium arboreum] "]
["c56088.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD32667 [Gossypium barbadense]"]
["c46737.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; ","K01528|0|gra:105776979|K01528 dynamin GTPase [EC:3.6.5.5] | (RefSeq) dynamin-2B","[UR]","--","Dynamin central region;; Dynamin family;; Dynamin GTPase effector domain","Dynamin-2B OS=Arabidopsis thaliana OX=3702 GN=DRP2B PE=1 SV=2","S","Function unknown","PREDICTED: dynamin-2B [Gossypium arboreum]"]
["c86377.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","Trypsin","--","O","Posttranslational modification, protein turnover, chaperones","Chymotrypsinogen B [Symbiodinium microadriaticum]"]
["c90773.graph_c0","--","--","--","--","--","--","--","--","L","Replication, recombination and repair","--"]
["c30001.graph_c0","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","FAR1 DNA-binding domain;; MULE transposase domain;; SWIM zinc finger","Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1","S","Function unknown","protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Durio zibethinus]"]
["c44956.graph_c0","--","--","--","--","--","--","N-terminal C2 in EEIG1 and EHBP1 proteins;; LysM domain","Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=PMIR1 PE=2 SV=1","S","Function unknown","PREDICTED: protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1-like [Gossypium hirsutum] "]
["c9942.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC100249546 [Vitis vinifera]"]
["c7829.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: 3-dehydroquinate dehydratase activity (GO:0003855);; Molecular Function: shikimate 3-dehydrogenase (NADP+) activity (GO:0004764);; Biological Process: shikimate metabolic process (GO:0019632);; Molecular Function: NADP binding (GO:0050661);; Biological Process: oxidation-reduction process (GO:0055114);; ","K13832|9.08084e-75|fve:101303651|K13832 3-dehydroquinate dehydratase / shikimate dehydrogenase [EC:4.2.1.10 1.1.1.25] | (RefSeq) bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like","[E]","Amino acid transport and metabolism ","Shikimate / quinate 5-dehydrogenase;; NADP oxidoreductase coenzyme F420-dependent;; Saccharopine dehydrogenase NADP binding domain","Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB3004 PE=1 SV=1","E","Amino acid transport and metabolism","PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Fragaria vesca subsp. vesca]"]
["c33900.graph_c0","--","--","Cellular Component: spindle pole (GO:0000922);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule organizing center (GO:0005815);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule nucleation (GO:0007020);; Molecular Function: gamma-tubulin binding (GO:0043015);; ","K16573|0|gra:105767409|K16573 gamma-tubulin complex component 6 | (RefSeq) uncharacterized LOC105767409","[Z]","Cytoskeleton ","Spc97 / Spc98 family","Gamma-tubulin complex component 3 OS=Arabidopsis thaliana OX=3702 GN=GCP3 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107959243 isoform X2 [Gossypium hirsutum]"]
["c50259.graph_c0","--","--","Cellular Component: extracellular space (GO:0005615);; ","--","--","--","Pollen proteins Ole e I like","Anther-specific protein LAT52 OS=Solanum lycopersicum OX=4081 GN=LAT52 PE=2 SV=1","S","Function unknown","PREDICTED: anther-specific protein LAT52-like [Gossypium raimondii] "]
["c4358.graph_c1","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC105786883 [Gossypium raimondii]"]
["c33690.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: lipid metabolic process (GO:0006629);; Molecular Function: hydrolase activity (GO:0016787);; ","--","[I]","Lipid transport and metabolism ","Lipase (class 3);; Protein of unknown function (DUF2974)","Phospholipase A1-IIbeta OS=Arabidopsis thaliana OX=3702 GN=At2g31100 PE=1 SV=2","S","Function unknown","PREDICTED: uncharacterized protein LOC107911983 [Gossypium hirsutum]"]
["c82697.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD20790 [Gossypium barbadense]"]
["c85649.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511);; Molecular Function: peptidase activity (GO:0008233);; Cellular Component: proteasome regulatory particle, base subcomplex (GO:0008540);; Biological Process: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly (GO:0045899);; Biological Process: proteasome regulatory particle assembly (GO:0070682);; ","K03065|9.16452e-50|gsl:Gasu_47410|K03065 26S proteasome regulatory subunit T5 | (RefSeq) AAA-type ATPase","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA)","26S proteasome regulatory subunit 6A homolog OS=Brassica campestris OX=3711 GN=TBP1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","26S proteasome subunit P45 [Rhizophagus irregularis]"]
["c47507.graph_c0","--","--","Biological Process: negative regulation of flower development (GO:0009910);; Cellular Component: membrane (GO:0016020);; Biological Process: histone methylation (GO:0016571);; Cellular Component: Cdc73/Paf1 complex (GO:0016593);; Biological Process: positive regulation of transcription, DNA-templated (GO:0045893);; ","K15176|0|gra:105795499|K15176 RNA polymerase-associated protein CTR9 | (RefSeq) RNA polymerase-associated protein CTR9 homolog","[P]","Inorganic ion transport and metabolism ","Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat;; Tetratricopeptide repeat","Protein CTR9 homolog OS=Arabidopsis thaliana OX=3702 GN=VIP6 PE=1 SV=1","S","Function unknown","PREDICTED: protein CTR9 homolog [Gossypium hirsutum]"]
["c43546.graph_c0","[MDT]","Cell wall/membrane/envelope biogenesis ;; Cell cycle control, cell division, chromosome partitioning ;; Signal transduction mechanisms ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Molecular Function: microtubule-severing ATPase activity (GO:0008568);; Biological Process: cytoplasmic microtubule organization (GO:0031122);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA)","ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana OX=3702 GN=FIGL1 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Nicotiana tabacum]"]
["c47122.graph_c0","--","--","--","K15200|0|gra:105804550|K15200 general transcription factor 3C polypeptide 2 | (RefSeq) hypothetical protein","[L]","Replication, recombination and repair ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107925902 isoform X2 [Gossypium hirsutum]"]
["c21600.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Biological Process: calcium ion transport (GO:0006816);; Cellular Component: membrane (GO:0016020);; Molecular Function: hydrolase activity (GO:0016787);; Molecular Function: ion binding (GO:0043167);; ","K01537|3.5838e-47|tcc:TCM_020728|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) Autoinhibited calcium ATPase","[P]","Inorganic ion transport and metabolism ","--","Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=ACA12 PE=2 SV=1","P","Inorganic ion transport and metabolism","putative calcium-transporting ATPase 13, plasma membrane-type [Durio zibethinus]"]
["c37347.graph_c1","--","--","--","K12604|3.8609e-30|eus:EUTSA_v10006521mg|K12604 CCR4-NOT transcription complex subunit 1 | (RefSeq) hypothetical protein","[K]","Transcription ","CCR4-Not complex component, Not1","--","K","Transcription","CCR4-NOT transcription complex subunit 1-like isoform X4 [Durio zibethinus]"]
["c89244.graph_c0","--","--","Molecular Function: protein domain specific binding (GO:0019904);; ","K06630|2.45235e-41|sot:102588264|K06630 14-3-3 protein epsilon | (RefSeq) 16R; 14-3-3-like protein 16R-like","[O]","Posttranslational modification, protein turnover, chaperones ","14-3-3 protein","14-3-3-like protein 16R OS=Solanum tuberosum OX=4113 PE=2 SV=1","T","Signal transduction mechanisms","unnamed protein product [Coffea canephora]"]
["c34279.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Kinesin-like protein KIN-5C OS=Nicotiana tabacum OX=4097 GN=KIN5C PE=1 SV=1","L","Replication, recombination and repair","reverse transcriptase [Corchorus capsularis]"]
["c46458.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; ","K14788|0|gra:105761581|K14788 ribosome biogenesis protein ENP2 | (RefSeq) nucleolar protein 10","[R]","General function prediction only ","NUC153 domain","--","S","Function unknown","PREDICTED: nucleolar protein 10 [Gossypium raimondii] "]
["c16049.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; ","--","[QI]","--","--","Noroxomaritidine synthase OS=Narcissus aff. pseudonarcissus MK-2014 OX=1540222 GN=Cyp96T1 PE=1 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: alkane hydroxylase MAH1-like [Theobroma cacao]"]
["c25567.graph_c0","--","--","--","--","[K]","Transcription ","Staphylococcal nuclease homologue","--","L","Replication, recombination and repair","Nuclease domain-containing protein 1 [Choanephora cucurbitarum]"]
["c23744.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; ","K18635|8.57527e-38|fve:101309836|K18635 protein SPIRAL1 and related proteins | (RefSeq) protein SPIRAL1-like 2","--","--","--","Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1","S","Function unknown","PREDICTED: protein SPIRAL1-like 2 [Fragaria vesca subsp. vesca]"]
["c26899.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: helicase activity (GO:0004386);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: chloroplast (GO:0009507);; ","--","[A]","RNA processing and modification ","DEAD/DEAH box helicase;; Helicase conserved C-terminal domain","DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana OX=3702 GN=RH22 PE=2 SV=1","A","RNA processing and modification","hypothetical protein GOBAR_AA12468 [Gossypium barbadense]"]
["c30134.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K20726|1.02346e-117|gra:105803756|K20726 transmembrane protein 222 | (RefSeq) protein RTE1-HOMOLOG","[S]","Function unknown ","Protein of unknown function (DUF778)","Protein RTE1-HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=RTH PE=2 SV=1","S","Function unknown","PREDICTED: protein RTE1-HOMOLOG-like [Gossypium hirsutum] "]
["c35828.graph_c0","--","--","Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111297999 [Durio zibethinus]"]
["c19907.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","--","--","hypothetical protein M569_00222, partial [Genlisea aurea]"]
["c75019.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: mitochondrion inheritance (GO:0000001);; Biological Process: replicative cell aging (GO:0001302);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: protein folding (GO:0006457);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: negative regulation of proteolysis (GO:0045861);; ","K17081|7.14348e-90|gsl:Gasu_02320|K17081 prohibitin 2 | (RefSeq) prohibitin","[O]","Posttranslational modification, protein turnover, chaperones ","SPFH domain / Band 7 family","Prohibitin-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","prohibitin [Galdieria sulphuraria] "]
["c61614.graph_c0","--","--","Molecular Function: phosphorelay response regulator activity (GO:0000156);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","K14491|6.99489e-17|tcc:TCM_009387|K14491 two-component response regulator ARR-B family | (RefSeq) Pseudo-response regulator 6-like protein","[K]","Transcription ","--","Putative two-component response regulator-like APRR6 OS=Arabidopsis thaliana OX=3702 GN=APRR6 PE=3 SV=2","K","Transcription","putative two-component response regulator-like APRR6 [Durio zibethinus]"]
["c89650.graph_c0","--","--","--","--","[W]","Extracellular structures ","Laminin EGF domain","--","S","Function unknown","--"]
["c49077.graph_c0","--","--","--","--","--","--","Frigida-like protein","FRIGIDA-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=FRL3 PE=1 SV=1","S","Function unknown","hypothetical protein B456_001G227000 [Gossypium raimondii]"]
["c45364.graph_c1","--","--","Molecular Function: enzyme inhibitor activity (GO:0004857);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: cell wall (GO:0005618);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: pectinesterase activity (GO:0030599);; Biological Process: cell wall modification (GO:0042545);; Biological Process: negative regulation of catalytic activity (GO:0043086);; Molecular Function: aspartyl esterase activity (GO:0045330);; Biological Process: pectin catabolic process (GO:0045490);; ","K01051|7.70015e-12|gra:105769342|K01051 pectinesterase [EC:3.1.1.11] | (RefSeq) pectinesterase-like","--","--","--","Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=PME3 PE=1 SV=2","G","Carbohydrate transport and metabolism","Pectinesterase, catalytic [Corchorus capsularis]"]
["c76205.graph_c0","[V]","Defense mechanisms ","Biological Process: drug transmembrane transport (GO:0006855);; Molecular Function: drug transmembrane transporter activity (GO:0015238);; Molecular Function: antiporter activity (GO:0015297);; Cellular Component: integral component of membrane (GO:0016021);; ","K03327|4.09194e-47|gra:105765570|K03327 multidrug resistance protein, MATE family | (RefSeq) MATE efflux family protein LAL5-like","[R]","General function prediction only ","MatE","Protein DETOXIFICATION 49 OS=Arabidopsis thaliana OX=3702 GN=DTX49 PE=2 SV=1","V","Defense mechanisms","protein DETOXIFICATION 49-like [Durio zibethinus]"]
["c45215.graph_c1","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: regulation of seed germination (GO:0010029);; Biological Process: protein ubiquitination (GO:0016567);; Molecular Function: ubiquitin binding (GO:0043130);; Molecular Function: protein heterodimerization activity (GO:0046982);; ","K10632|0|gra:105767773|K10632 BRCA1-associated protein [EC:2.3.2.27] | (RefSeq) BRCA1-associated protein","[R]","General function prediction only ","BRCA1-associated protein 2;; Zn-finger in ubiquitin-hydrolases and other protein;; Ring finger domain;; Zinc finger, C3HC4 type (RING finger);; Zinc finger, C3HC4 type (RING finger)","RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2","S","Function unknown","PREDICTED: BRCA1-associated protein-like [Gossypium hirsutum]"]
["c42989.graph_c1","--","--","--","--","--","--","--","F-box protein PP2-A15 OS=Arabidopsis thaliana OX=3702 GN=PP2A15 PE=2 SV=1","S","Function unknown","PREDICTED: F-box protein PP2-A15-like [Gossypium hirsutum] "]
["c15362.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","Uncharacterized protein TCM_029659 [Theobroma cacao]"]
["c89059.graph_c0","--","--","Biological Process: cellular protein modification process (GO:0006464);; Molecular Function: small protein activating enzyme activity (GO:0008641);; ","K10684|2.60582e-34|gra:105788661|K10684 ubiquitin-like 1-activating enzyme E1 A [EC:6.2.1.45] | (RefSeq) SUMO-activating enzyme subunit 1B-1-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","SUMO-activating enzyme subunit 1B-2 OS=Arabidopsis thaliana OX=3702 GN=SAE1B-2 PE=1 SV=1","H","Coenzyme transport and metabolism","hypothetical protein B456_003G118500 [Gossypium raimondii]"]
["c52408.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","--","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog isoform X2 [Ricinus communis]"]
["c38977.graph_c1","[R]","General function prediction only ","Cellular Component: integral component of membrane (GO:0016021);; ","--","[MW]","--","Fasciclin domain","Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana OX=3702 GN=FLA17 PE=2 SV=1","M","Cell wall/membrane/envelope biogenesis","fasciclin-like arabinogalactan protein 15 precursor [Gossypium hirsutum] "]
["c11858.graph_c1","--","--","Cellular Component: ubiquitin ligase complex (GO:0000151);; Biological Process: protein polyubiquitination (GO:0000209);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: zinc ion binding (GO:0008270);; Molecular Function: ligase activity (GO:0016874);; Molecular Function: ubiquitin conjugating enzyme binding (GO:0031624);; Biological Process: positive regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032436);; Biological Process: protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787);; Molecular Function: ubiquitin protein ligase activity (GO:0061630);; ","K11975|1.90223e-171|gra:105771155|K11975 E3 ubiquitin-protein ligase RNF144 [EC:2.3.2.27] | (RefSeq) probable E3 ubiquitin-protein ligase RNF217","[O]","Posttranslational modification, protein turnover, chaperones ","IBR domain, a half RING-finger domain;; Zinc finger, C3HC4 type (RING finger)","ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1","S","Function unknown","PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Gossypium arboreum]"]
["c93524.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Myosin tail","--","Z","Cytoskeleton","--"]
["c48233.graph_c0","[BQ]","Chromatin structure and dynamics ;; Secondary metabolites biosynthesis, transport and catabolism ","--","K11407|0|gra:105765623|K11407 histone deacetylase 6 [EC:3.5.1.98] | (RefSeq) histone deacetylase 15","[B]","Chromatin structure and dynamics ","Histone deacetylase domain","Histone deacetylase 15 OS=Arabidopsis thaliana OX=3702 GN=HDA15 PE=2 SV=2","BQ","--","PREDICTED: histone deacetylase 15 isoform X1 [Gossypium arboreum] "]
["c40195.graph_c0","--","--","--","--","--","--","Plant self-incompatibility protein S1","S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105963310 [Erythranthe guttata]"]
["c26977.graph_c0","--","--","--","--","--","--","--","Olee1-like protein OS=Betula pendula OX=3505 PE=2 SV=1","S","Function unknown","Pollen_Ole_e_I domain-containing protein [Cephalotus follicularis]"]
["c93458.graph_c0","[I]","Lipid transport and metabolism ","Biological Process: metabolic process (GO:0008152);; ","--","[I]","Lipid transport and metabolism ","Acyltransferase","--","I","Lipid transport and metabolism","acyltransferase [Tilletiaria anomala UBC 951] "]
["c37379.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; ","K16465|1.73974e-44|gra:105768223|K16465 centrin-1 | (RefSeq) calcium-binding protein PBP1-like","[ZD]","--","EF-hand domain pair","Calcium-binding protein KRP1 OS=Arabidopsis thaliana OX=3702 GN=KRP1 PE=2 SV=1","DTZ","--","PREDICTED: calcium-binding protein PBP1-like [Gossypium hirsutum] "]
["c57755.graph_c0","[I]","Lipid transport and metabolism ","Molecular Function: methyltransferase activity (GO:0008168);; Biological Process: methylation (GO:0032259);; ","--","--","--","SAM dependent carboxyl methyltransferase","Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana OX=3702 GN=At5g38100 PE=2 SV=1","S","Function unknown","PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Gossypium hirsutum]"]
["c49281.graph_c0","--","--","Biological Process: cell fate specification (GO:0001708);; Biological Process: embryonic pattern specification (GO:0009880);; Biological Process: embryonic meristem initiation (GO:0090421);; ","--","--","--","PHD - plant homeodomain finger protein;; Coiled-coil region of Oberon","Protein OBERON 4 OS=Arabidopsis thaliana OX=3702 GN=OBE4 PE=1 SV=2","S","Function unknown","LOW QUALITY PROTEIN: protein OBERON 4 [Herrania umbratica]"]
["c54518.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: polyadenylate-binding protein-interacting protein 3-like isoform X1 [Gossypium raimondii] "]
["c44808.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: proline-tRNA ligase activity (GO:0004827);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: prolyl-tRNA aminoacylation (GO:0006433);; ","K01881|0|gra:105764009|K01881 prolyl-tRNA synthetase [EC:6.1.1.15] | (RefSeq) putative proline--tRNA ligase C19C7.06","[J]","Translation, ribosomal structure and biogenesis ","tRNA synthetase class II core domain (G, H, P, S and T);; Prolyl-tRNA synthetase, C-terminal;; Anticodon binding domain","Proline--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g62120 PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: proline--tRNA ligase, cytoplasmic-like [Gossypium hirsutum]"]
["c57391.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","S","Function unknown","NDR1/HIN1-like protein 6, partial [Durio zibethinus]"]
["c27871.graph_c0","--","--","Biological Process: chromatin remodeling (GO:0006338);; Biological Process: leaf development (GO:0048366);; Biological Process: anther development (GO:0048653);; Cellular Component: BAF-type complex (GO:0090544);; ","--","--","--","SWI/SNF-like complex subunit BAF250/Osa","Armadillo repeat-containing protein LFR OS=Arabidopsis thaliana OX=3702 GN=LFR PE=2 SV=1","S","Function unknown","PREDICTED: armadillo repeat-containing protein LFR isoform X2 [Gossypium arboreum]"]
["c1330.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis (GO:0015979);; Molecular Function: chlorophyll binding (GO:0016168);; ","K02698|9.65362e-38|fve:101298445|K02698 photosystem I subunit X | (RefSeq) photosystem I reaction center subunit psaK, chloroplastic","--","--","--","Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAK PE=2 SV=2","S","Function unknown","PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Fragaria vesca subsp. vesca]"]
["c38554.graph_c0","--","--","Molecular Function: hydrolase activity (GO:0016787);; ","K03787|3.05121e-27|gra:105774531|K03787 5'-nucleotidase [EC:3.1.3.5] | (RefSeq) uncharacterized LOC105774531","--","--","--","--","F","Nucleotide transport and metabolism","PREDICTED: 5&apos;-nucleotidase SurE-like isoform X2 [Gossypium hirsutum]"]
["c92913.graph_c0","--","--","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; ","K14411|1.11003e-27|nnu:104602803|K14411 RNA-binding protein Musashi | (RefSeq) heterogeneous nuclear ribonucleoprotein 1-like","[A]","RNA processing and modification ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1","S","Function unknown","hypothetical protein AQUCO_01700784v1 [Aquilegia coerulea]"]
["c39087.graph_c0","--","--","Molecular Function: metalloendopeptidase activity (GO:0004222);; Biological Process: proteolysis (GO:0006508);; Biological Process: cell adhesion (GO:0007155);; Cellular Component: integral component of membrane (GO:0016021);; ","K01404|1.19531e-61|tcc:TCM_033985|K01404 leishmanolysin [EC:3.4.24.36] | (RefSeq) Metalloendopeptidase / zinc ion binding protein isoform 3","[MV]","--","--","--","O","Posttranslational modification, protein turnover, chaperones","Metalloendopeptidase / zinc ion binding protein isoform 3, partial [Theobroma cacao]"]
["c27697.graph_c2","--","--","Cellular Component: membrane (GO:0016020);; ","--","[R]","General function prediction only ","Leucine rich repeat N-terminal domain;; Leucine rich repeat;; Leucine Rich repeats (2 copies)","Receptor-like protein Cf-9 OS=Solanum pimpinellifolium OX=4084 GN=CF-9 PE=1 SV=1","S","Function unknown","receptor-like protein 12 [Durio zibethinus]"]
["c1031.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","--","--","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103941904, partial [Pyrus x bretschneideri]"]
["c51035.graph_c0","--","--","Biological Process: cell morphogenesis (GO:0000902);; Molecular Function: actin binding (GO:0003779);; Biological Process: cytoskeleton organization (GO:0007010);; ","K16810|1.95708e-50|tcc:TCM_024866|K16810 TBCC domain-containing protein 1 | (RefSeq) Tubulin binding cofactor C domain-containing protein isoform 1","[S]","Function unknown ","--","--","S","Function unknown","PREDICTED: TBCC domain-containing protein 1 [Theobroma cacao]"]
["c6516.graph_c1","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: histone deacetylation (GO:0016575);; Biological Process: root development (GO:0048364);; Biological Process: histone H3-K4 methylation (GO:0051568);; Biological Process: oxidation-reduction process (GO:0055114);; ","K11450|5.28622e-15|tcc:TCM_034356|K11450 lysine-specific histone demethylase 1A [EC:1.-.-.-] | (RefSeq) LSD1-like 1","--","--","--","--","S","Function unknown","PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Theobroma cacao] "]
["c44030.graph_c2","[H]","Coenzyme transport and metabolism ","Molecular Function: hydroxymethylbilane synthase activity (GO:0004418);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: peptidyl-pyrromethane cofactor linkage (GO:0018160);; Biological Process: tetrapyrrole biosynthetic process (GO:0033014);; Cellular Component: apoplast (GO:0048046);; ","K01749|8.69325e-145|tcc:TCM_007724|K01749 hydroxymethylbilane synthase [EC:2.5.1.61] | (RefSeq) Hydroxymethylbilane synthase isoform 1","[H]","Coenzyme transport and metabolism ","Porphobilinogen deaminase, dipyromethane cofactor binding domain;; Porphobilinogen deaminase, C-terminal domain","Porphobilinogen deaminase, chloroplastic OS=Pisum sativum OX=3888 GN=HEMC PE=1 SV=1","H","Coenzyme transport and metabolism","PREDICTED: porphobilinogen deaminase, chloroplastic [Theobroma cacao]"]
["c31860.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Ziziphus jujuba]"]
["c55315.graph_c0","--","--","Cellular Component: protein phosphatase type 2A complex (GO:0000159);; Biological Process: signal transduction (GO:0007165);; Biological Process: regulation of phosphoprotein phosphatase activity (GO:0034047);; ","K11584|1.03649e-69|gra:105803461|K11584 serine/threonine-protein phosphatase 2A regulatory subunit B' | (RefSeq) serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform-like","[T]","Signal transduction mechanisms ","Protein phosphatase 2A regulatory B subunit (B56 family)","Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B&apos; gamma isoform OS=Arabidopsis thaliana OX=3702 GN=B&apos;GAMMA PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B&apos; gamma isoform-like isoform X2 [Gossypium hirsutum]"]
["c29745.graph_c0","--","--","--","--","[R]","General function prediction only ","Domain of unknown function (DUF4283)","--","S","Function unknown","uncharacterized protein LOC107605009 [Arachis ipaensis]"]
["c41156.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Cellular Component: cell (GO:0005623);; Biological Process: cell redox homeostasis (GO:0045454);; ","--","[OC]","--","Thioredoxin;; Phosducin","Thioredoxin domain-containing protein PLP3B OS=Arabidopsis thaliana OX=3702 GN=PLP3B PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]"]
["c44718.graph_c1","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; ","--","[T]","Signal transduction mechanisms ","RING-variant domain;; Protein kinase domain;; Protein tyrosine kinase;; Protein tyrosine kinase;; Protein kinase domain","Serine/threonine-protein kinase PBL27 OS=Arabidopsis thaliana OX=3702 GN=PBL27 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: uncharacterized protein LOC108482991 isoform X1 [Gossypium arboreum]"]
["c44703.graph_c0","[H]","Coenzyme transport and metabolism ","Cellular Component: cytosol (GO:0005829);; ","--","--","--","TENA/THI-4/PQQC family","Bifunctional TH2 protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=TH2 PE=1 SV=1","S","Function unknown","PREDICTED: probable aminopyrimidine aminohydrolase, mitochondrial [Gossypium raimondii] "]
["c37848.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K08269|5.90069e-31|gra:105802857|K08269 serine/threonine-protein kinase ULK/ATG1 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase atg1","[OUT]","--","--","Serine/threonine-protein kinase ATG1a OS=Arabidopsis thaliana OX=3702 GN=ATG1A PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD10217 [Gossypium barbadense]"]
["c64235.graph_c0","--","--","--","--","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","--"]
["c57831.graph_c0","--","--","--","--","--","--","--","--","G","Carbohydrate transport and metabolism","uncharacterized protein LOC111289982 [Durio zibethinus]"]
["c52644.graph_c0","--","--","--","K14487|1.94047e-34|gra:105779652|K14487 auxin responsive GH3 gene family | (RefSeq) indole-3-acetic acid-amido synthetase GH3.17-like","--","--","GH3 auxin-responsive promoter","4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana OX=3702 GN=GH3.12 PE=1 SV=1","--","--","PREDICTED: indole-3-acetic acid-amido synthetase GH3.17 [Gossypium hirsutum]"]
["c68724.graph_c0","[C]","Energy production and conversion ","Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620);; ","K00128|1.44411e-18|pda:103710071|K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] | (RefSeq) aldehyde dehydrogenase family 2 member B7, mitochondrial-like","[C]","Energy production and conversion ","Aldehyde dehydrogenase family","Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana OX=3702 GN=ALDH2C4 PE=1 SV=2","C","Energy production and conversion","4-trimethylaminobutyraldehyde dehydrogenase [Fragilariopsis cylindrus CCMP1102]"]
["c40706.graph_c1","--","--","--","--","--","--","--","Protein JASON OS=Arabidopsis thaliana OX=3702 GN=JASON PE=2 SV=1","S","Function unknown","protein JASON isoform X2 [Durio zibethinus]"]
["c57044.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; ","K01193|2.02933e-38|tcc:TCM_014931|K01193 beta-fructofuranosidase [EC:3.2.1.26] | (RefSeq) Glycosyl hydrolases family 32 protein isoform 1","[G]","Carbohydrate transport and metabolism ","Domain of unknown function (DUF3357)","Acid beta-fructofuranosidase 1, vacuolar OS=Rosa hybrid cultivar OX=128735 PE=1 SV=1","G","Carbohydrate transport and metabolism","LOW QUALITY PROTEIN: acid beta-fructofuranosidase 1, vacuolar-like [Durio zibethinus]"]
["c25120.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: nucleus (GO:0005634);; Biological Process: translation (GO:0006412);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: small ribosomal subunit (GO:0015935);; ","K02988|5.95328e-16|gra:105772817|K02988 small subunit ribosomal protein S5 | (RefSeq) 30S ribosomal protein S5, chloroplastic-like","[J]","Translation, ribosomal structure and biogenesis ","--","30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=rps5 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Gossypium arboreum]"]
["c49152.graph_c0","[G]","Carbohydrate transport and metabolism ","Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: proton transport (GO:0015992);; Molecular Function: mannosylglycoprotein endo-beta-mannosidase activity (GO:0033947);; Biological Process: ATP metabolic process (GO:0046034);; ","K18577|0|gra:105781536|K18577 mannosylglycoprotein endo-beta-mannosidase [EC:3.2.1.152] | (RefSeq) ManA2; mannosylglycoprotein endo-beta-mannosidase-like","[G]","Carbohydrate transport and metabolism ","Glycosyl hydrolases family 2","Mannosylglycoprotein endo-beta-mannosidase OS=Lilium longiflorum OX=4690 GN=EBM PE=1 SV=4","G","Carbohydrate transport and metabolism","beta-mannosidase [Gossypium mustelinum]"]
["c36694.graph_c0","--","--","Cellular Component: ribosome (GO:0005840);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: plastid translation (GO:0032544);; ","K19033|1.53371e-24|tcc:TCM_047048|K19033 RPS31; 30S ribosomal protein S31 | (RefSeq) Plastid-specific ribosomal protein 4","--","--","Ribosomal protein S31e","30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1","S","Function unknown","PREDICTED: 30S ribosomal protein S31, chloroplastic [Theobroma cacao] "]
["c8159.graph_c0","--","--","--","K02202|6.103e-11|gra:105800070|K02202 cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] | (RefSeq) cyclin-dependent kinase D-3-like","[DKL]","--","--","Cyclin-dependent kinase D-3 OS=Arabidopsis thaliana OX=3702 GN=CDKD-3 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: cyclin-dependent kinase D-3-like [Gossypium raimondii] "]
["c51812.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CRG98_006835 [Punica granatum]"]
["c56094.graph_c0","--","--","--","K00558|1.98694e-14|gra:105785483|K00558 DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] | (RefSeq) DNA (cytosine-5)-methyltransferase CMT3","--","--","--","--","--","--","PREDICTED: DNA (cytosine-5)-methyltransferase CMT3-like isoform X1 [Gossypium hirsutum]"]
["c9012.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: metal ion binding (GO:0046872);; Molecular Function: dioxygenase activity (GO:0051213);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QR]","--","non-haem dioxygenase in morphine synthesis N-terminal","Protein SRG1 OS=Arabidopsis thaliana OX=3702 GN=SRG1 PE=2 SV=1","S","Function unknown","PREDICTED: protein SRG1 [Theobroma cacao] "]
["c29092.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: plant-type secondary cell wall biogenesis (GO:0009834);; Biological Process: glucuronoxylan biosynthetic process (GO:0010417);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: glucuronoxylan glucuronosyltransferase activity (GO:0080116);; ","K20890|1.18957e-141|gra:105802321|K20890 xylan alpha-glucuronosyltransferase [EC:2.4.1.-] | (RefSeq) UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like","[G]","Carbohydrate transport and metabolism ","--","UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GUX1 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [Gossypium arboreum] "]
["c48008.graph_c1","--","--","--","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","Armadillo/beta-catenin-like repeat;; HEAT-like repeat;; Atypical Arm repeat;; HEAT repeats;; HEAT repeat;; Armadillo-like","Importin subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=IMPA2 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: importin subunit alpha-2-like [Gossypium hirsutum]"]
["c40303.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09422|1.29954e-20|gra:105770643|K09422 myb proto-oncogene protein, plant | (RefSeq) transcription factor GAMYB-like","[K]","Transcription ","Myb-like DNA-binding domain;; Myb-like DNA-binding domain","Transcription factor GAMYB OS=Oryza sativa subsp. japonica OX=39947 GN=GAMYB PE=1 SV=1","K","Transcription","transcription factor MYB33-like isoform X3 [Durio zibethinus]"]
["c44394.graph_c1","--","--","--","--","--","--","Myb-like DNA-binding domain","Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2","S","Function unknown","Myb-like HTH transcriptional regulator family protein, putative [Theobroma cacao]"]
["c47328.graph_c0","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; Transmembrane amino acid transporter protein;; Transmembrane amino acid transporter protein;; Tryptophan/tyrosine permease family","Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_041406 [Vitis vinifera]"]
["c27523.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; ","K09338|3.87736e-14|tcc:TCM_010868|K09338 homeobox-leucine zipper protein | (RefSeq) Homeobox-leucine zipper protein HOX3","[K]","Transcription ","--","Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana OX=3702 GN=ATHB-17 PE=2 SV=1","K","Transcription","PREDICTED: homeobox-leucine zipper protein ATHB-17-like [Gossypium hirsutum]"]
["c34161.graph_c1","--","--","--","--","[S]","Function unknown ","--","--","S","Function unknown","hypothetical protein COLO4_10388 [Corchorus olitorius]"]
["c48419.graph_c0","--",";; ","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: chloroplast organization (GO:0009658);; Molecular Function: amino acid binding (GO:0016597);; ","--","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain","Serine/threonine-protein kinase STY17 OS=Arabidopsis thaliana OX=3702 GN=STY17 PE=1 SV=1","T","Signal transduction mechanisms","serine/threonine-protein kinase STY46-like isoform X6 [Durio zibethinus]"]
["c85188.graph_c0","--","--","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[QI]","--","--","Cytochrome P450 86B1 OS=Arabidopsis thaliana OX=3702 GN=CYP86B1 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","Cytochrome P450-like protein [Theobroma cacao]"]
["c36591.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; ","K11593|3.33507e-70|zma:100304327|K11593 eukaryotic translation initiation factor 2C | (RefSeq) GRMZM2G039455; uncharacterized LOC100304327","[J]","Translation, ribosomal structure and biogenesis ","Piwi domain","Protein argonaute 1B OS=Oryza sativa subsp. japonica OX=39947 GN=AGO1B PE=2 SV=3","J","Translation, ribosomal structure and biogenesis","hypothetical protein CISIN_1g0014661mg, partial [Citrus sinensis]"]
["c52114.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; Biological Process: metal ion transport (GO:0030001);; Molecular Function: metal ion binding (GO:0046872);; ","--","--","--","Heavy-metal-associated domain","Heavy metal-associated isoprenylated plant protein 47 OS=Arabidopsis thaliana OX=3702 GN=HIPP47 PE=3 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105790063 [Gossypium raimondii] "]
["c65281.graph_c0","--","--","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Biological Process: proteolysis (GO:0006508);; ","--","--","--","--","Subtilisin-like protease SBT4.2 OS=Arabidopsis thaliana OX=3702 GN=SBT4.2 PE=3 SV=3","O","Posttranslational modification, protein turnover, chaperones","LOW QUALITY PROTEIN: subtilisin-like protease SBT4.3 [Herrania umbratica]"]
["c47582.graph_c1","--","--","--","--","--","--","--","--","--","--","hypothetical protein BVRB_5g111900 [Beta vulgaris subsp. vulgaris]"]
["c52383.graph_c0","[S]","Function unknown ","--","--","--","--","Domain of unknown function (DUF309)","--","S","Function unknown","hypothetical protein GOBAR_DD08950 [Gossypium barbadense]"]
["c88524.graph_c0","--","--","Cellular Component: monolayer-surrounded lipid storage body (GO:0012511);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Oleosin","Major oleosin NAP-II (Fragment) OS=Brassica napus OX=3708 PE=1 SV=1","S","Function unknown","PREDICTED: oleosin 1-like [Gossypium hirsutum]"]
["c78216.graph_c0","--","--","Cellular Component: vacuole (GO:0005773);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: raffinose alpha-galactosidase activity (GO:0052692);; ","K07407|1.38149e-16|tcc:TCM_045545|K07407 alpha-galactosidase [EC:3.2.1.22] | (RefSeq) Melibiase family protein isoform 1","[G]","Carbohydrate transport and metabolism ","--","Alpha-galactosidase 3 OS=Arabidopsis thaliana OX=3702 GN=AGAL3 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: alpha-galactosidase 3-like isoform X2 [Gossypium hirsutum]"]
["c9421.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CBOM_06555 [Ceraceosorus bombacis]"]
["c42500.graph_c0","--","--","--","--","--","--","DUF761-associated sequence motif","--","S","Function unknown","uncharacterized protein LOC111315359 isoform X1 [Durio zibethinus]"]
["c77531.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Biological Process: multicellular organism development (GO:0007275);; ","--","--","--","Dormancy/auxin associated protein","Dormancy-associated protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DRMH1 PE=1 SV=1","S","Function unknown","Dormancy/auxin associated family protein [Arabidopsis thaliana] "]
["c20380.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana OX=3702 GN=LTPG1 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","lipid transfer protein, partial [Gossypium arboreum]"]
["c32268.graph_c0","--","--","Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","--","--","--","Plastocyanin-like domain","Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=1 SV=1","S","Function unknown","PREDICTED: lamin-like protein [Gossypium raimondii] "]
["c69483.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC108946909 [Nicotiana tomentosiformis]"]
["c39542.graph_c1","--","--","--","--","[C]","Energy production and conversion ","--","SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=KING1 PE=1 SV=2","T","Signal transduction mechanisms","PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like, partial [Gossypium hirsutum]"]
["c26470.graph_c0","[S]","Function unknown ","--","--","--","--","Protein of unknown function (DUF1223)","--","S","Function unknown","uncharacterized protein LOC111275781 [Durio zibethinus]"]
["c77822.graph_c0","[K]","Transcription ","Cellular Component: membrane (GO:0016020);; ","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine Rich repeat","Receptor-like protein 9a OS=Arabidopsis thaliana OX=3702 GN=RLP9A PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD16068 [Gossypium barbadense]"]
["c70861.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: structural constituent of cytoskeleton (GO:0005200);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: cytoplasm (GO:0005737);; Cellular Component: microtubule (GO:0005874);; Biological Process: microtubule-based process (GO:0007017);; ","K07375|1.1294e-47|brp:103849834|K07375 tubulin beta | (RefSeq) tubulin beta-1 chain-like","[Z]","Cytoskeleton ","Tubulin C-terminal domain","Tubulin beta chain OS=Chlamydomonas incerta OX=51695 GN=TUBB PE=3 SV=1","Z","Cytoskeleton","beta-tubulin 2, partial [Mortierella verticillata]"]
["c46732.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Calcium-dependent channel, 7TM region, putative phosphate;; Late exocytosis, associated with Golgi transport;; Cytosolic domain of 10TM putative phosphate transporter","CSC1-like protein At4g02900 OS=Arabidopsis thaliana OX=3702 GN=At4g02900 PE=3 SV=1","S","Function unknown","PREDICTED: CSC1-like protein At4g02900 isoform X3 [Gossypium arboreum]"]
["c88478.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA27197 [Gossypium barbadense]"]
["c46951.graph_c1","--","--","Molecular Function: core promoter sequence-specific DNA binding (GO:0001046);; Molecular Function: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding (GO:0001228);; Cellular Component: nucleus (GO:0005634);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: positive regulation of transcription from RNA polymerase II promoter (GO:0045944);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","--","--","--","--","S","Function unknown","transcription factor bHLH153-like isoform X1 [Durio zibethinus]"]
["c47403.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: lyase activity (GO:0016829);; ","--","[C]","Energy production and conversion ","Phosphoenolpyruvate phosphomutase;; Isocitrate lyase family;; Phosphoenolpyruvate phosphomutase","Petal death protein OS=Dianthus caryophyllus OX=3570 GN=PDP PE=1 SV=1","G","Carbohydrate transport and metabolism","Phosphoenolpyruvate carboxylase family protein isoform 1 [Theobroma cacao]"]
["c4933.graph_c1","--","--","--","--","--","--","NB-ARC domain","TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1","S","Function unknown","PREDICTED: TMV resistance protein N-like isoform X1 [Gossypium hirsutum] "]
["c43129.graph_c1","--","--","--","--","[R]","General function prediction only ","Reverse transcriptase (RNA-dependent DNA polymerase);; Integrase core domain;; Reverse transcriptase (RNA-dependent DNA polymerase)","Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1","L","Replication, recombination and repair","Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]"]
["c47753.graph_c0","--","--","Molecular Function: N-acetyltransferase activity (GO:0008080);; Molecular Function: zinc ion binding (GO:0008270);; ","--","--","--","TPL-binding domain in jasmonate signalling;; PHD-finger","Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC107957986 isoform X1 [Gossypium hirsutum]"]
["c29468.graph_c0","--","--","--","--","[R]","General function prediction only ","C2H2-type zinc finger;; C2H2-type zinc finger;; Zinc-finger double-stranded RNA-binding;; Zinc finger, C2H2 type","Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1","S","Function unknown","hypothetical protein B456_004G014300 [Gossypium raimondii]"]
["c28.graph_c1","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD28367 [Gossypium barbadense]"]
["c41553.graph_c0","--","--","Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: chloroplast envelope (GO:0009941);; ","--","--","--","--","Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA3 PE=1 SV=1","S","Function unknown","hypothetical protein B456_007G076500 [Gossypium raimondii]"]
["c30258.graph_c0","--","--","--","--","--","--","LITAF-like zinc ribbon domain","--","S","Function unknown","hypothetical protein RhiirC2_734031 [Rhizophagus irregularis] "]
["c36410.graph_c0","--","--","Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: regulation of pH (GO:0006885);; Biological Process: response to salt stress (GO:0009651);; Molecular Function: sodium:proton antiporter activity (GO:0015385);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: sodium ion transmembrane transport (GO:0035725);; Biological Process: potassium ion homeostasis (GO:0055075);; Biological Process: hydrogen ion transmembrane transport (GO:1902600);; ","--","[P]","Inorganic ion transport and metabolism ","--","Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana OX=3702 GN=NHX1 PE=1 SV=2","P","Inorganic ion transport and metabolism","PREDICTED: sodium/hydrogen exchanger 2-like [Gossypium hirsutum] "]
["c35122.graph_c0","--","--","--","--","--","--","GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p;; PMR5 N terminal Domain","Protein trichome birefringence-like 38 OS=Arabidopsis thaliana OX=3702 GN=TBL38 PE=2 SV=1","S","Function unknown","PREDICTED: protein trichome birefringence-like 38 [Gossypium arboreum] "]
["c31567.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein TorRG33x02_134920 [Trema orientalis]"]
["c47146.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Cellular Component: nucleus (GO:0005634);; Cellular Component: mitochondrion (GO:0005739);; ","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain","Pentatricopeptide repeat-containing protein PNM1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PNM1 PE=1 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Gossypium raimondii] "]
["c25350.graph_c1","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Molecular Function: histone binding (GO:0042393);; ","--","--","--","--","--","L","Replication, recombination and repair","PREDICTED: chromatin structure-remodeling complex protein SYD-like [Gossypium hirsutum]"]
["c26641.graph_c0","--","--","--","--","[S]","Function unknown ","--","Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1","S","Function unknown","autophagy-related protein 18a [Herrania umbratica]"]
["c44782.graph_c0","[M]","Cell wall/membrane/envelope biogenesis ","--","--","[R]","General function prediction only ","Development and cell death domain;; Kelch motif;; Kelch motif;; Kelch motif;; Galactose oxidase, central domain;; Galactose oxidase, central domain;; Kelch motif","B2 protein OS=Daucus carota OX=4039 PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC108450414 isoform X2 [Gossypium arboreum]"]
["c28320.graph_c0","[R]","General function prediction only ","--","K06995|6.95762e-87|fve:101291295|K06995 uncharacterized protein | (RefSeq) uncharacterized LOC101291295","--","--","Protein of unknown function (DUF861)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC101291295 [Fragaria vesca subsp. vesca]"]
["c36223.graph_c0","--","--","Cellular Component: peroxisome (GO:0005777);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","[T]","Signal transduction mechanisms ","Phosphatidylinositol 3- and 4-kinase;; Ubiquitin family;; Ubiquitin-2 like Rad60 SUMO-like","Phosphatidylinositol 4-kinase gamma 3 OS=Arabidopsis thaliana OX=3702 GN=PI4KG3 PE=2 SV=1","S","Function unknown","PREDICTED: LOW QUALITY PROTEIN: phosphatidylinositol 4-kinase gamma 3 [Theobroma cacao]"]
["c18384.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Putative S-adenosyl-L-methionine-dependent methyltransferase","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107939990 isoform X1 [Gossypium hirsutum]"]
["c87185.graph_c0","--","--","--","--","--","--","Zinc knuckle","--","--","--","PREDICTED: uncharacterized protein LOC108481545 [Gossypium arboreum]"]
["c4159.graph_c1","--","--","--","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein VITISV_024814 [Vitis vinifera]"]
["c26570.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; ","--","--","--","--","--","--","--","hypothetical protein (mitochondrion) [Vicia faba]"]
["c47147.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Cellular Component: cytosol (GO:0005829);; Biological Process: protein phosphorylation (GO:0006468);; Biological Process: intracellular signal transduction (GO:0035556);; ","--","--","--","bHLH-MYC and R2R3-MYB transcription factors N-terminal","Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RSS3 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA07221 [Gossypium barbadense]"]
["c94412.graph_c0","--","--","Molecular Function: acid phosphatase activity (GO:0003993);; Cellular Component: extracellular region (GO:0005576);; Cellular Component: vacuole (GO:0005773);; Cellular Component: plasmodesma (GO:0009506);; Cellular Component: chloroplast (GO:0009507);; Cellular Component: membrane (GO:0016020);; Biological Process: dephosphorylation (GO:0016311);; ","--","--","--","--","--","S","Function unknown","HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana] "]
["c46987.graph_c0","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; Cellular Component: anchored component of plasma membrane (GO:0046658);; ","K19891|0|tcc:TCM_019120|K19891 glucan endo-1,3-beta-glucosidase 1/2/3 [EC:3.2.1.39] | (RefSeq) Glucan endo-1,3-beta-glucosidase, putative isoform 1","--","--","Glycosyl hydrolases family 17;; X8 domain","Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g66250 PE=1 SV=2","G","Carbohydrate transport and metabolism","Glucan endo-1,3-beta-glucosidase, putative isoform 1 [Theobroma cacao]"]
["c16906.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: ubiquitin-protein transferase activity (GO:0004842);; Biological Process: protein ubiquitination (GO:0016567);; ","--","--","--","Armadillo/beta-catenin-like repeat;; U-box domain","U-box domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=PUB40 PE=2 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: U-box domain-containing protein 40 [Gossypium raimondii] "]
["c27747.graph_c1","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: translation elongation factor activity (GO:0003746);; Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Biological Process: translational elongation (GO:0006414);; ","K03234|0|gsl:Gasu_50880|K03234 elongation factor 2 | (RefSeq) elongation factor EF-2","[J]","Translation, ribosomal structure and biogenesis ","Elongation factor Tu GTP binding domain;; Elongation factor G, domain IV;; Elongation Factor G, domain II;; Elongation factor Tu domain 2","Elongation factor 2 OS=Parachlorella kessleri OX=3074 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","predicted protein [Hordeum vulgare subsp. vulgare]"]
["c24867.graph_c1","[C]","Energy production and conversion ","Biological Process: cytokinin metabolic process (GO:0009690);; Molecular Function: oxidoreductase activity, acting on CH-OH group of donors (GO:0016614);; Molecular Function: cytokinin dehydrogenase activity (GO:0019139);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00279|1.89612e-72|tcc:TCM_037384|K00279 cytokinin dehydrogenase [EC:1.5.99.12] | (RefSeq) Cytokinin oxidase","[C]","Energy production and conversion ","Cytokinin dehydrogenase 1, FAD and cytokinin binding","Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana OX=3702 GN=CKX7 PE=1 SV=1","C","Energy production and conversion","hypothetical protein COLO4_21137 [Corchorus olitorius]"]
["c40283.graph_c0","--","--","--","--","--","--","SBP domain","Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL16 PE=2 SV=1","S","Function unknown","squamosa promoter-binding-like protein 16 isoform X1 [Durio zibethinus] "]
["c37785.graph_c0","--","--","Molecular Function: methyltransferase activity (GO:0008168);; Cellular Component: chloroplast (GO:0009507);; Biological Process: methylation (GO:0032259);; ","--","[R]","General function prediction only ","Rubisco LSMT substrate-binding;; SET domain","Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 OS=Arabidopsis thaliana OX=3702 GN=PTAC14 PE=1 SV=1","S","Function unknown","PREDICTED: histone-lysine N-methyltransferase setd3 isoform X2 [Gossypium raimondii]"]
["c53959.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD06469 [Gossypium barbadense]"]
["c61498.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Molecular Function: zinc ion binding (GO:0008270);; ","K11643|1.90812e-16|gra:105768713|K11643 chromodomain-helicase-DNA-binding protein 4 [EC:3.6.4.12] | (RefSeq) helicase protein MOM1-like","--","--","--","--","--","--","PREDICTED: helicase protein MOM1-like isoform X3 [Gossypium raimondii] "]
["c82278.graph_c0","--","--","Molecular Function: ion binding (GO:0043167);; ","K17095|3.67864e-12|smo:SELMODRAFT_167346|K17095 annexin A7/11 | (RefSeq) hypothetical protein","[U]","Intracellular trafficking, secretion, and vesicular transport ","Annexin","--","S","Function unknown","hypothetical protein SELMODRAFT_167346 [Selaginella moellendorffii] "]
["c49454.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: alanine-tRNA ligase activity (GO:0004813);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: zinc ion binding (GO:0008270);; Biological Process: mitochondrial alanyl-tRNA aminoacylation (GO:0070143);; ","K01872|0|gra:105794951|K01872 alanyl-tRNA synthetase [EC:6.1.1.7] | (RefSeq) alanine--tRNA ligase-like","[J]","Translation, ribosomal structure and biogenesis ","tRNA synthetases class II (A);; Threonyl and Alanyl tRNA synthetase second additional domain;; DHHA1 domain","Alanine--tRNA ligase OS=Arabidopsis thaliana OX=3702 GN=ALATS PE=1 SV=3","J","Translation, ribosomal structure and biogenesis","PREDICTED: alanine--tRNA ligase-like [Gossypium hirsutum]"]
["c54594.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein At4g38062-like [Gossypium raimondii] "]
["c63761.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_AA01693 [Gossypium barbadense]"]
["c39661.graph_c0","[D]","Cell cycle control, cell division, chromosome partitioning ","Biological Process: activation of MAPK activity (GO:0000187);; Molecular Function: signal transducer, downstream of receptor, with serine/threonine kinase activity (GO:0004702);; Molecular Function: MAP kinase kinase activity (GO:0004708);; Molecular Function: ATP binding (GO:0005524);; Biological Process: male meiosis cytokinesis (GO:0007112);; Cellular Component: phragmoplast (GO:0009524);; Biological Process: lateral root formation (GO:0010311);; ","K04368|0|gra:105784362|K04368 mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] | (RefSeq) mitogen-activated protein kinase kinase 6","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana OX=3702 GN=MKK6 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: mitogen-activated protein kinase kinase 6 [Gossypium arboreum] "]
["c40486.graph_c0","--","--","Biological Process: lipid transport (GO:0006869);; Molecular Function: lipid binding (GO:0008289);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Probable lipid transfer;; Protease inhibitor/seed storage/LTP family","Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana OX=3702 GN=At5g64080 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein B456_012G141100 [Gossypium raimondii]"]
["c23704.graph_c1","[P]","Inorganic ion transport and metabolism ","Molecular Function: ATP binding (GO:0005524);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: integral component of plasma membrane (GO:0005887);; Molecular Function: cation-transporting ATPase activity (GO:0019829);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: cation transmembrane transport (GO:0098655);; ","K01537|1.22962e-61|gra:105802821|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) calcium-transporting ATPase, endoplasmic reticulum-type-like","[P]","Inorganic ion transport and metabolism ","--","Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum OX=4081 GN=LCA1 PE=2 SV=1","P","Inorganic ion transport and metabolism","calcium-transporting ATPase, endoplasmic reticulum-type-like [Carica papaya]"]
["c16995.graph_c0","--","--","Molecular Function: binding (GO:0005488);; Cellular Component: membrane (GO:0016020);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD02983 [Gossypium barbadense]"]
["c35392.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105796507 [Gossypium raimondii] "]
["c72292.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; Molecular Function: transmembrane transporter activity (GO:0022857);; Biological Process: transmembrane transport (GO:0055085);; ","K03327|2.08759e-15|tcc:TCM_045538|K03327 multidrug resistance protein, MATE family | (RefSeq) MATE efflux family protein isoform 1","--","--","--","--","--","--","protein DETOXIFICATION 53-like [Durio zibethinus]"]
["c54392.graph_c0","--","--","--","K04733|2.84854e-08|gra:105767850|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) PTI1-like tyrosine-protein kinase At3g15890","--","--","--","--","--","--","PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Gossypium raimondii] "]
["c38992.graph_c0","--","--","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Biological Process: glucose import (GO:0046323);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","[R]","General function prediction only ","--","Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MSSP3 PE=2 SV=1","G","Carbohydrate transport and metabolism","monosaccharide-sensing protein 2-like [Hevea brasiliensis]"]
["c82103.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal small subunit assembly (GO:0000028);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02962|7.04669e-45|mis:MICPUN_76945|K02962 small subunit ribosomal protein S17e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal S17","40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3","J","Translation, ribosomal structure and biogenesis","ribosomal protein S17e [Naematelia encephala]"]
["c40039.graph_c0","--","--","--","K09562|1.53788e-163|gra:105780257|K09562 hsp70-interacting protein | (RefSeq) hsp70 nucleotide exchange factor fes1","[O]","Posttranslational modification, protein turnover, chaperones ","HEAT repeat;; Armadillo/beta-catenin-like repeat;; Nucleotide exchange factor Fes1","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA32321 [Gossypium barbadense]"]
["c46903.graph_c0","[C]","Energy production and conversion ","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Sec-independent protein translocase protein (TatC);; Respiratory-chain NADH dehydrogenase, 30 Kd subunit","Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana OX=3702 GN=YMF16 PE=2 SV=2","S","Function unknown","hypothetical protein, partial (mitochondrion) [Nicotiana tabacum]"]
["c40522.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K08790|1.99614e-12|tcc:TCM_020906|K08790 serine/threonine kinase 38 [EC:2.7.11.1] | (RefSeq) AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein isoform 1","[R]","General function prediction only ","--","--","T","Signal transduction mechanisms","serine/threonine-protein kinase tricorner-like isoform X1 [Durio zibethinus]"]
["c90954.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Phospholipase B","--","S","Function unknown","hypothetical protein CEUSTIGMA_g3478.t1 [Chlamydomonas eustigma]"]
["c40398.graph_c2","[QV]","Secondary metabolites biosynthesis, transport and catabolism ;; Defense mechanisms ","Molecular Function: monooxygenase activity (GO:0004497);; Molecular Function: iron ion binding (GO:0005506);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705);; Molecular Function: heme binding (GO:0020037);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Cytochrome P450;; Cytochrome P450","Cytochrome P450 71D10 OS=Glycine max OX=3847 GN=CYP71D10 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: premnaspirodiene oxygenase-like isoform X1 [Gossypium raimondii]"]
["c47863.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: metalloendopeptidase activity (GO:0004222);; Molecular Function: ATP binding (GO:0005524);; Biological Process: proteolysis (GO:0006508);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cell division (GO:0051301);; ","K03798|0|gra:105768710|K03798 cell division protease FtsH [EC:3.4.24.-] | (RefSeq) ATP-dependent zinc metalloprotease FTSH 7, chloroplastic","[O]","Posttranslational modification, protein turnover, chaperones ","ATPase family associated with various cellular activities (AAA);; FtsH Extracellular;; AAA domain (Cdc48 subfamily);; AAA domain (dynein-related subfamily);; Peptidase family M41","ATP-dependent zinc metalloprotease FTSH 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FTSH7 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Gossypium arboreum] "]
["c80552.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c23735.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: ligase activity (GO:0016874);; Biological Process: cellular protein metabolic process (GO:0044267);; ","K10666|1.18419e-20|gra:105774059|K10666 E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RMA1H1-like","--","--","--","--","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Gossypium hirsutum]"]
["c60588.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Biological Process: protein folding (GO:0006457);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD","Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus OX=3873 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_DD25583 [Gossypium barbadense]"]
["c82534.graph_c0","--","--","--","K02267|1.79362e-22|egu:105050763|K02267 cytochrome c oxidase subunit 6b | (RefSeq) cytochrome c oxidase subunit 6b-3","[C]","Energy production and conversion ","Cytochrome oxidase c subunit VIb","Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","cytochrome c oxidase, subunit VIb [Gonapodya prolifera JEL478]"]
["c18126.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: chloroplast (GO:0009507);; Biological Process: mitochondrial mRNA modification (GO:0080156);; ","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain","Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E69 PE=3 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic-like [Gossypium hirsutum]"]
["c61024.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","--","RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1","L","Replication, recombination and repair","PREDICTED: uncharacterized protein LOC107956087 [Gossypium hirsutum]"]
["c41421.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: stress-induced protein KIN2 [Ricinus communis] "]
["c27666.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: nucleotide binding (GO:0000166);; Molecular Function: nucleic acid binding (GO:0003676);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","--","[R]","General function prediction only ","RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)","Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1","S","Function unknown","hypothetical protein OsI_39235 [Oryza sativa Indica Group]"]
["c74121.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Biological Process: protein folding (GO:0006457);; Molecular Function: unfolded protein binding (GO:0051082);; ","K03283|2.50019e-18|fve:101299993|K03283 heat shock 70kDa protein 1/8 | (RefSeq) stromal 70 kDa heat shock-related protein, chloroplastic-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum OX=3888 GN=HSP70 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","stromal 70 kDa heat shock-related protein chloroplastic-like [Trifolium pratense]"]
["c57583.graph_c0","--","--","--","K04079|8.76783e-07|cmo:103503135|K04079 molecular chaperone HtpG | (RefSeq) heat shock cognate protein 80-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","Heat shock protein 82 OS=Zea mays OX=4577 GN=HSP82 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: heat shock cognate protein 80-like, partial [Cucumis melo]"]
["c51218.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Kunitz/Bovine pancreatic trypsin inhibitor domain","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein K493DRAFT_318868 [Basidiobolus meristosporus CBS 931.73]"]
["c39468.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105797227 [Gossypium raimondii] "]
["c32434.graph_c0","[R]","General function prediction only ","Molecular Function: hydrolase activity (GO:0016787);; ","K07018|3.194e-106|tcc:TCM_040406|K07018 uncharacterized protein | (RefSeq) Alpha/beta-Hydrolases superfamily protein","--","--","X-Pro dipeptidyl-peptidase (S15 family);; Serine aminopeptidase, S33;; alpha/beta hydrolase fold","--","S","Function unknown","uncharacterized protein LOC110411818 [Herrania umbratica]"]
["c57093.graph_c0","--","--","--","--","[R]","General function prediction only ","--","Ankyrin repeat domain-containing protein 2A OS=Arabidopsis thaliana OX=3702 GN=AKR2A PE=1 SV=2","S","Function unknown","hypothetical protein DCAR_029251 [Daucus carota subsp. sativus]"]
["c7781.graph_c0","--","--","Biological Process: response to stress (GO:0006950);; ","--","--","--","--","Universal stress protein A-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g01520 PE=1 SV=2","S","Function unknown","PREDICTED: universal stress protein A-like protein [Nelumbo nucifera]"]
["c39134.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: serine-type endopeptidase activity (GO:0004252);; Cellular Component: cell wall (GO:0005618);; Biological Process: proteolysis (GO:0006508);; ","--","--","--","Subtilase family;; Peptidase inhibitor I9","Subtilisin-like protease SBT3.8 OS=Arabidopsis thaliana OX=3702 GN=SBT3.8 PE=3 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_008G260500 [Gossypium raimondii]"]
["c44322.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E50 PE=2 SV=1","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At2g37320 [Gossypium arboreum]"]
["c2805.graph_c0","--","--","--","K02942|3.98607e-10|gra:105763967|K02942 large subunit ribosomal protein LP1 | (RefSeq) 60S acidic ribosomal protein P1-like","[J]","Translation, ribosomal structure and biogenesis ","60s Acidic ribosomal protein","60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2","J","Translation, ribosomal structure and biogenesis","hypothetical protein GOBAR_AA32196 [Gossypium barbadense]"]
["c81765.graph_c0","--","--","Molecular Function: catalytic activity (GO:0003824);; ","K14803|2.65209e-07|gra:105795056|K14803 protein phosphatase PTC2/3 [EC:3.1.3.16] | (RefSeq) probable protein phosphatase 2C 49","--","--","--","--","--","--","PREDICTED: probable protein phosphatase 2C 49 [Gossypium arboreum] "]
["c44273.graph_c0","[T]","Signal transduction mechanisms ","--","--","[R]","General function prediction only ","WD domain, G-beta repeat","--","S","Function unknown","PREDICTED: dystrophia myotonica WD repeat-containing protein-like isoform X1 [Gossypium hirsutum]"]
["c27508.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: iron ion binding (GO:0005506);; Biological Process: glutamate biosynthetic process (GO:0006537);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: response to cytokinin (GO:0009735);; Molecular Function: FMN binding (GO:0010181);; Molecular Function: glutamate synthase (NADH) activity (GO:0016040);; Biological Process: ammonia assimilation cycle (GO:0019676);; Biological Process: developmental growth (GO:0048589);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Molecular Function: iron-sulfur cluster binding (GO:0051536);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00264|4.03745e-49|tcc:TCM_015379|K00264 glutamate synthase (NADPH/NADH) [EC:1.4.1.13 1.4.1.14] | (RefSeq) NADH-dependent glutamate synthase 1 isoform 1","[E]","Amino acid transport and metabolism ","Glutamate synthase central domain","Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2","E","Amino acid transport and metabolism","glutamate synthase [NADH], amyloplastic [Citrus clementina]"]
["c57549.graph_c0","[K]","Transcription ","Cellular Component: integral component of membrane (GO:0016021);; ","--","[R]","General function prediction only ","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine rich repeat N-terminal domain;; Leucine Rich repeat;; Leucine Rich Repeat","Receptor-like protein Cf-9 OS=Solanum pimpinellifolium OX=4084 GN=CF-9 PE=1 SV=1","S","Function unknown","receptor-like protein 12 [Durio zibethinus]"]
["c52744.graph_c0","--","--","--","--","--","--","--","--","K","Transcription","PREDICTED: transcription factor bHLH62 isoform X2 [Gossypium raimondii] "]
["c8862.graph_c0","--","--","Molecular Function: FMN binding (GO:0010181);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","--","--","S","Function unknown","hypothetical protein IQ06DRAFT_285951 [Stagonospora sp. SRC1lsM3a]"]
["c38788.graph_c0","--","--","--","K14303|0|gra:105761126|K14303 nuclear pore complex protein Nup160 | (RefSeq) nuclear pore complex protein NUP160","[YU]","--","Family of unknown function (DUF5311);; Nucleoporin Nup120/160;; Nucleoporin Nup120/160","Nuclear pore complex protein NUP160 OS=Arabidopsis thaliana OX=3702 GN=NUP160 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein B456_007G307100 [Gossypium raimondii]"]
["c45097.graph_c0","--","--","--","--","--","--","--","Transcription factor MYBC1 OS=Arabidopsis thaliana OX=3702 GN=MYBC1 PE=1 SV=1","S","Function unknown","PREDICTED: transcription factor LUX [Gossypium hirsutum]"]
["c51664.graph_c0","--","--","Biological Process: transcription, DNA-templated (GO:0006351);; ","--","--","--","AP2 domain","Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana OX=3702 GN=ERF038 PE=2 SV=1","K","Transcription","PREDICTED: ethylene-responsive transcription factor ERF038-like isoform X1 [Gossypium raimondii] "]
["c69703.graph_c0","--","--","--","--","[I]","Lipid transport and metabolism ","--","--","I","Lipid transport and metabolism","--"]
["c28390.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Nodulin-like","--","S","Function unknown","hypothetical protein B456_002G195700 [Gossypium raimondii]"]
["c55563.graph_c0","--","--","Cellular Component: cytosol (GO:0005829);; Biological Process: purine nucleoside catabolic process (GO:0006152);; Biological Process: uridine catabolic process (GO:0006218);; Molecular Function: uridine nucleosidase activity (GO:0045437);; Molecular Function: adenosine nucleosidase activity (GO:0047622);; Molecular Function: inosine nucleosidase activity (GO:0047724);; Molecular Function: xanthosine nucleotidase activity (GO:0072585);; ","K01240|1.79299e-18|tcc:TCM_022528|K01240 uridine nucleosidase [EC:3.2.2.3] | (RefSeq) Uridine-ribohydrolase 1 isoform 1","--","--","--","Uridine nucleosidase 1 OS=Arabidopsis thaliana OX=3702 GN=URH1 PE=1 SV=2","F","Nucleotide transport and metabolism","PREDICTED: probable uridine nucleosidase 1 [Ipomoea nil] "]
["c38653.graph_c1","--","--","Molecular Function: GTPase activator activity (GO:0005096);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: endocytosis (GO:0006897);; Biological Process: response to auxin (GO:0009733);; Biological Process: leaf morphogenesis (GO:0009965);; Biological Process: xylem and phloem pattern formation (GO:0010051);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Cellular Component: trans-Golgi network transport vesicle (GO:0030140);; Molecular Function: phosphatidylinositol binding (GO:0035091);; Biological Process: positive regulation of GTPase activity (GO:0043547);; ","K12489|6.05187e-106|tcc:TCM_008353|K12489 Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein | (RefSeq) ARF GTPase-activating protein","[T]","Signal transduction mechanisms ","--","ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana OX=3702 GN=AGD3 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","ADP-ribosylation factor GTPase-activating protein AGD3-like isoform X3 [Durio zibethinus]"]
["c69572.graph_c0","--","--","Biological Process: defense response (GO:0006952);; Biological Process: response to biotic stimulus (GO:0009607);; ","--","--","--","Pathogenesis-related protein Bet v I family","Major allergen Pru av 1 OS=Prunus avium OX=42229 GN=PRUA1 PE=1 SV=1","--","--","hypothetical protein GOBAR_AA16545 [Gossypium barbadense]"]
["c12330.graph_c1","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: intracellular protein transport (GO:0006886);; Molecular Function: Ran GTPase binding (GO:0008536);; Cellular Component: integral component of membrane (GO:0016021);; ","K20223|6.98874e-37|tcc:TCM_020056|K20223 importin-7 | (RefSeq) Importin-7, putative isoform 1","[YU]","--","--","Importin beta-like SAD2 OS=Arabidopsis thaliana OX=3702 GN=SAD2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","importin beta-like SAD2 [Herrania umbratica]"]
["c53267.graph_c0","--","--","Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: steroid hormone mediated signaling pathway (GO:0043401);; ","--","--","--","--","Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana OX=3702 GN=At3g27390 PE=1 SV=2","S","Function unknown","uncharacterized membrane protein At3g27390-like [Herrania umbratica] "]
["c28681.graph_c0","--","--","Molecular Function: GTPase activity (GO:0003924);; Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: translation (GO:0006412);; ","K12852|3.28868e-21|aip:107640763|K12852 116 kDa U5 small nuclear ribonucleoprotein component | (RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like","[J]","Translation, ribosomal structure and biogenesis ","--","110 kDa U5 small nuclear ribonucleoprotein component CLO OS=Arabidopsis thaliana OX=3702 GN=CLO PE=1 SV=1","J","Translation, ribosomal structure and biogenesis","110 kDa U5 small nuclear ribonucleoprotein component CLO [Arachis ipaensis]"]
["c22725.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein CERSUDRAFT_162701, partial [Gelatoporia subvermispora B]"]
["c41872.graph_c0","[K]","Transcription ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Leucine rich repeat;; Leucine Rich repeats (2 copies);; Leucine Rich Repeat;; Leucine rich repeat N-terminal domain;; Protein kinase domain;; Protein tyrosine kinase","Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1","S","Function unknown","hypothetical protein B456_011G284400 [Gossypium raimondii]"]
["c29944.graph_c0","--","--","Molecular Function: nucleic acid binding (GO:0003676);; Cellular Component: nucleus (GO:0005634);; Biological Process: DNA integration (GO:0015074);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity (GO:0016740);; ","--","[R]","General function prediction only ","--","Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1","L","Replication, recombination and repair","hypothetical protein VITISV_005284 [Vitis vinifera]"]
["c46852.graph_c0","--","--","--","K07870|1.67358e-50|gra:105790732|K07870 Ras homolog gene family, member T1 | (RefSeq) mitochondrial Rho GTPase 2","[V]","Defense mechanisms ","Dynamin family","Mitochondrial Rho GTPase 1 OS=Arabidopsis thaliana OX=3702 GN=MIRO1 PE=1 SV=1","S","Function unknown","mitochondrial Rho GTPase 2 isoform X1 [Herrania umbratica]"]
["c39747.graph_c0","--","--","--","--","--","--","LURP-one-related;; LURP-one-related","Protein LURP-one-related 12 OS=Arabidopsis thaliana OX=3702 GN=At3g15810 PE=2 SV=1","S","Function unknown","PREDICTED: protein LURP-one-related 12-like [Gossypium hirsutum]"]
["c38986.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: intracellular protein transport (GO:0006886);; Molecular Function: Ran GTPase binding (GO:0008536);; Cellular Component: integral component of membrane (GO:0016021);; ","K20223|4.80096e-52|gra:105796395|K20223 importin-7 | (RefSeq) importin beta-like SAD2","[YU]","--","Importin-beta N-terminal domain","Importin beta-like SAD2 OS=Arabidopsis thaliana OX=3702 GN=SAD2 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","putative importin-7 [Gossypium arboreum]"]
["c61857.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","--"]
["c69550.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","Putative ephrin-receptor like;; Nine Cysteines Domain of family 3 GPCR","--","S","Function unknown","hypothetical protein GUITHDRAFT_48955, partial [Guillardia theta CCMP2712] "]
["c87192.graph_c0","--","--","Biological Process: deadenylation-dependent decapping of nuclear-transcribed mRNA (GO:0000290);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: cytoplasm (GO:0005737);; Molecular Function: manganese ion binding (GO:0030145);; Molecular Function: m7G(5')pppN diphosphatase activity (GO:0050072);; ","K12613|6.3987e-41|sind:105166613|K12613 mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] | (RefSeq) mRNA-decapping enzyme subunit 2-like","[A]","RNA processing and modification ","NUDIX domain","mRNA-decapping enzyme subunit 2 OS=Arabidopsis thaliana OX=3702 GN=DCP2 PE=1 SV=1","L","Replication, recombination and repair","PREDICTED: mRNA-decapping enzyme subunit 2 [Ziziphus jujuba]"]
["c48363.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: DNA binding (GO:0003677);; Molecular Function: exonuclease activity (GO:0004527);; Biological Process: nucleic acid phosphodiester bond hydrolysis (GO:0090305);; ","--","[U]","Intracellular trafficking, secretion, and vesicular transport ","5'-3' exonuclease, C-terminal SAM fold","ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ABCB25 PE=1 SV=1","L","Replication, recombination and repair","hypothetical protein B456_005G123800 [Gossypium raimondii]"]
["c47899.graph_c0","--","--","Molecular Function: Rab GDP-dissociation inhibitor activity (GO:0005093);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; Biological Process: protein transport (GO:0015031);; Molecular Function: oxidoreductase activity (GO:0016491);; Biological Process: regulation of catalytic activity (GO:0050790);; Biological Process: oxidation-reduction process (GO:0055114);; ","K17255|0|gra:105786609|K17255 Rab GDP dissociation inhibitor | (RefSeq) guanosine nucleotide diphosphate dissociation inhibitor 2","[O]","Posttranslational modification, protein turnover, chaperones ","GDP dissociation inhibitor;; Flavin containing amine oxidoreductase","Guanosine nucleotide diphosphate dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein B456_002G268400 [Gossypium raimondii]"]
["c46628.graph_c0","[HT]","Coenzyme transport and metabolism ;; Signal transduction mechanisms ","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: kinase activity (GO:0016301);; Biological Process: phosphorylation (GO:0016310);; ","K08869|0|tcc:TCM_046845|K08869 aarF domain-containing kinase | (RefSeq) AarF domain-containing kinase isoform 1","[R]","General function prediction only ","ABC1 family","Protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABC1K7 PE=1 SV=1","S","Function unknown","probable serine/threonine-protein kinase abkC [Durio zibethinus]"]
["c36916.graph_c1","--","--","Biological Process: protein transport (GO:0015031);; ","K19476|2.98549e-132|gra:105777935|K19476 vacuolar protein sorting-associated protein IST1 | (RefSeq) hypothetical protein","[Z]","Cytoskeleton ","Regulator of Vps4 activity in the MVB pathway","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105777935 isoform X1 [Gossypium raimondii] "]
["c82703.graph_c0","--","--","Cellular Component: intracellular (GO:0005622);; Biological Process: transport (GO:0006810);; ","--","[IT]","--","Phosphatidylinositol transfer protein","--","S","Function unknown","hypothetical protein RirG_004100 [Rhizophagus irregularis DAOM 197198w]"]
["c47785.graph_c0","--","--","Biological Process: chromatin remodeling (GO:0006338);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Cellular Component: Ino80 complex (GO:0031011);; ","K11666|0|tcc:TCM_004823|K11666 INO80 complex subunit B | (RefSeq) HIT zinc finger,PAPA-1-like conserved region isoform 1","--","--","PAPA-1-like conserved region","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18613706 [Theobroma cacao] "]
["c49321.graph_c0","[K]","Transcription ","--","K14515|0|gra:105782844|K14515 EIN3-binding F-box protein | (RefSeq) EIN3-binding F-box protein 1-like","[R]","General function prediction only ","Leucine Rich repeat;; Leucine Rich repeats (2 copies)","EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1","S","Function unknown","EIN3-binding F-box protein 1-like [Durio zibethinus]"]
["c23379.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_DD08187 [Gossypium barbadense]"]
["c26149.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF4283)","--","S","Function unknown","uncharacterized protein LOC111312792 [Durio zibethinus] "]
["c42724.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107958375 isoform X1 [Gossypium hirsutum] "]
["c64795.graph_c0","--","--","--","K09419|2.69851e-07|rcu:8275192|K09419 heat shock transcription factor, other eukaryote | (RefSeq) heat stress transcription factor A-4a","--","--","--","--","--","--","heat stress transcription factor A-4a-like [Durio zibethinus] "]
["c29919.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC111304381 [Durio zibethinus]"]
["c93942.graph_c0","--","--","--","--","[Z]","Cytoskeleton ","Cofilin/tropomyosin-type actin-binding protein","--","--","--","actin depolymerizing factor ADF/cofilin [Emiliania huxleyi CCMP1516] "]
["c76944.graph_c0","[C]","Energy production and conversion ","Cellular Component: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (GO:0005749);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Molecular Function: succinate dehydrogenase (ubiquinone) activity (GO:0008177);; Molecular Function: electron carrier activity (GO:0009055);; Cellular Component: cell surface (GO:0009986);; Cellular Component: yeast-form cell wall (GO:0030445);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 2 iron, 2 sulfur cluster binding (GO:0051537);; Molecular Function: 3 iron, 4 sulfur cluster binding (GO:0051538);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; ","K00235|2.82262e-16|mus:103970730|K00235 succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1] | (RefSeq) succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like","[C]","Energy production and conversion ","--","Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2","C","Energy production and conversion","alpha-helical ferredoxin [Catenaria anguillulae PL171]"]
["c35363.graph_c0","--","--","Cellular Component: plant-type vacuole (GO:0000325);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: vacuolar membrane (GO:0005774);; Molecular Function: sulfonylurea receptor activity (GO:0008281);; Biological Process: response to salt stress (GO:0009651);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: cellular potassium ion homeostasis (GO:0030007);; Molecular Function: ATPase activity, coupled to transmembrane movement of substances (GO:0042626);; Biological Process: transmembrane transport (GO:0055085);; Biological Process: abscisic acid-activated signaling pathway involved in stomatal movement (GO:1901527);; ","--","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","--","ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2","V","Defense mechanisms","PREDICTED: ABC transporter C family member 5-like [Gossypium hirsutum]"]
["c42803.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA34644 [Gossypium barbadense]"]
["c29512.graph_c0","--","--","Biological Process: signal transduction (GO:0007165);; ","--","--","--","Ethylene-responsive binding factor-associated repression","Ninja-family protein AFP2 OS=Arabidopsis thaliana OX=3702 GN=AFP2 PE=1 SV=1","S","Function unknown","ABI five binding protein 3, putative [Theobroma cacao]"]
["c44599.graph_c0","--","--","Biological Process: response to auxin (GO:0009733);; ","--","--","--","Auxin responsive protein","Auxin-responsive protein SAUR36 OS=Oryza sativa subsp. japonica OX=39947 GN=SAUR39 PE=2 SV=1","S","Function unknown","PREDICTED: auxin-responsive protein SAUR67 [Theobroma cacao] "]
["c46038.graph_c2","--","--","Cellular Component: nucleolus (GO:0005730);; Cellular Component: cytosol (GO:0005829);; Biological Process: RNA splicing (GO:0008380);; Cellular Component: chloroplast (GO:0009507);; Biological Process: production of ta-siRNAs involved in RNA interference (GO:0010267);; Cellular Component: nuclear dicing body (GO:0010445);; Cellular Component: nuclear speck (GO:0016607);; Biological Process: primary miRNA processing (GO:0031053);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: shoot system development (GO:0048367);; Biological Process: regulation of meristem development (GO:0048509);; Biological Process: regulation of adaxial/abaxial pattern formation (GO:2000011);; ","--","[R]","General function prediction only ","Arsenite-resistance protein 2;; Domain of unknown function (DUF3546)","Serrate RNA effector molecule OS=Arabidopsis thaliana OX=3702 GN=SE PE=1 SV=2","K","Transcription","PREDICTED: serrate RNA effector molecule-like isoform X2 [Gossypium hirsutum]"]
["c26297.graph_c1","--","--","Molecular Function: sugar:proton symporter activity (GO:0005351);; Molecular Function: glucose transmembrane transporter activity (GO:0005355);; Cellular Component: integral component of plasma membrane (GO:0005887);; Biological Process: proton transport (GO:0015992);; Biological Process: glucose import (GO:0046323);; Biological Process: glucose transmembrane transport (GO:1904659);; ","--","[R]","General function prediction only ","Sugar (and other) transporter","Hexose carrier protein HEX6 OS=Ricinus communis OX=3988 GN=HEX6 PE=2 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein GOBAR_DD20976 [Gossypium barbadense]"]
["c30120.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","AAA domain (dynein-related subfamily)","--","S","Function unknown","uncharacterized protein LOC111314428 [Durio zibethinus]"]
["c264.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K02901|4.12514e-42|bvg:104884826|K02901 large subunit ribosomal protein L27e | (RefSeq) 60S ribosomal protein L27-3-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal L27e protein family;; KOW motif","60S ribosomal protein L27 OS=Pyrobotrys stellata OX=3064 GN=RPL27 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","hypothetical protein SPPG_06748 [Spizellomyces punctatus DAOM BR117] "]
["c36942.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Molecular Function: RNA binding (GO:0003723);; Molecular Function: RNA-directed DNA polymerase activity (GO:0003964);; Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: RNA-dependent DNA biosynthetic process (GO:0006278);; Biological Process: DNA recombination (GO:0006310);; Biological Process: proteolysis (GO:0006508);; Cellular Component: plastid (GO:0009536);; Biological Process: DNA integration (GO:0015074);; ","--","[R]","General function prediction only ","Integrase core domain","--","L","Replication, recombination and repair","hypothetical protein AXF42_Ash006943 [Apostasia shenzhenica]"]
["c29670.graph_c0","--","--","Cellular Component: thylakoid (GO:0009579);; Cellular Component: chloroplast part (GO:0044434);; ","K19034|1.36669e-37|gra:105786198|K19034 50S ribosomal protein 5 | (RefSeq) 50S ribosomal protein 5, chloroplastic","--","--","--","50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2","S","Function unknown","PREDICTED: 50S ribosomal protein 5, chloroplastic [Gossypium raimondii] "]
["c41110.graph_c0","[L]","Replication, recombination and repair ","Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: ATP binding (GO:0005524);; Biological Process: DNA repair (GO:0006281);; Biological Process: DNA recombination (GO:0006310);; Molecular Function: DNA-dependent ATPase activity (GO:0008094);; ","K03553|3.4459e-94|gra:105783661|K03553 recombination protein RecA | (RefSeq) DNA repair protein recA homolog 3, mitochondrial-like","[L]","Replication, recombination and repair ","recA bacterial DNA recombination protein;; recA bacterial DNA recombination protein;; KaiC;; Rad51","DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2","L","Replication, recombination and repair","PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Gossypium raimondii] "]
["c23996.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein PRUPE_5G044300 [Prunus persica]"]
["c7002.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC108459044 [Gossypium arboreum]"]
["c22511.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: neurofilament medium polypeptide [Theobroma cacao] "]
["c30374.graph_c0","--","--","--","--","--","--","Ataxin-2 C-terminal region","Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana OX=3702 GN=ERD15 PE=1 SV=1","S","Function unknown","Dehydration-induced protein, putative [Theobroma cacao]"]
["c39837.graph_c0","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: phospholipid-translocating ATPase activity (GO:0004012);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: phospholipid translocation (GO:0045332);; ","K01530|5.81659e-54|tcc:TCM_029073|K01530 phospholipid-translocating ATPase [EC:3.6.3.1] | (RefSeq) ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 1","[R]","General function prediction only ","--","Probable phospholipid-transporting ATPase 7 OS=Arabidopsis thaliana OX=3702 GN=ALA7 PE=3 SV=3","P","Inorganic ion transport and metabolism","ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein isoform 3 [Theobroma cacao]"]
["c55287.graph_c0","[E]","Amino acid transport and metabolism ","Cellular Component: chloroplast (GO:0009507);; ","--","--","--","Stress responsive A/B Barrel Domain","Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis thaliana OX=3702 GN=At5g22580 PE=1 SV=1","S","Function unknown","stress-response A/B barrel domain-containing protein At5g22580 [Herrania umbratica]"]
["c91731.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","--","--","M","Cell wall/membrane/envelope biogenesis","--"]
["c25399.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Biological Process: protein peptidyl-prolyl isomerization (GO:0000413);; Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755);; Biological Process: protein folding (GO:0006457);; ","K01802|4.31499e-55|fve:101296844|K01802 peptidylprolyl isomerase [EC:5.2.1.8] | (RefSeq) peptidyl-prolyl cis-trans isomerase CYP20-1-like","[O]","Posttranslational modification, protein turnover, chaperones ","Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD","Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana OX=3702 GN=CYP19-4 PE=1 SV=2","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like [Fragaria vesca subsp. vesca]"]
["c6131.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","--","--","PREDICTED: uncharacterized protein LOC107936798 [Gossypium hirsutum]"]
["c47951.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: pyruvate kinase activity (GO:0004743);; Biological Process: glycolytic process (GO:0006096);; Molecular Function: kinase activity (GO:0016301);; Molecular Function: potassium ion binding (GO:0030955);; ","K00873|0|gra:105800563|K00873 pyruvate kinase [EC:2.7.1.40] | (RefSeq) pyruvate kinase isozyme A, chloroplastic","[G]","Carbohydrate transport and metabolism ","Pyruvate kinase, barrel domain;; HpcH/HpaI aldolase/citrate lyase family;; Pyruvate kinase, alpha/beta domain","Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis OX=3988 PE=1 SV=1","G","Carbohydrate transport and metabolism","hypothetical protein B456_006G244400 [Gossypium raimondii]"]
["c93473.graph_c0","--","--","Biological Process: carbohydrate metabolic process (GO:0005975);; Molecular Function: mannosidase activity (GO:0015923);; Molecular Function: metal ion binding (GO:0046872);; ","K01191|2.9269e-08|tcc:TCM_046752|K01191 alpha-mannosidase [EC:3.2.1.24] | (RefSeq) Glycosyl hydrolase family 38 protein","[G]","Carbohydrate transport and metabolism ","Alpha mannosidase middle domain","Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1","G","Carbohydrate transport and metabolism","glycosyl hydrolase/mannosidase, partial [Phaeodactylum tricornutum CCAP 1055/1] "]
["c41299.graph_c1","[C]","Energy production and conversion ","--","K03943|3.34477e-31|tcc:TCM_004216|K03943 NADH dehydrogenase (ubiquinone) flavoprotein 2 [EC:1.6.5.3 1.6.99.3] | (RefSeq) NADH-ubiquinone oxidoreductase 24 kDa subunit, putative","[C]","Energy production and conversion ","Thioredoxin-like [2Fe-2S] ferredoxin","NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g02580 PE=1 SV=3","C","Energy production and conversion","hypothetical protein GOBAR_DD02228 [Gossypium barbadense]"]
["c7954.graph_c0","--","--","--","--","--","--","Late embryogenesis abundant protein 18","--","S","Function unknown","Late embryogenesis abundant protein group 8 protein, putative [Theobroma cacao]"]
["c36094.graph_c0","--","--","--","--","[D]","Cell cycle control, cell division, chromosome partitioning ","--","--","S","Function unknown","PREDICTED: WASH complex subunit FAM21 homolog isoform X1 [Gossypium hirsutum]"]
["c54214.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","O","Posttranslational modification, protein turnover, chaperones","hypothetical protein GOBAR_AA29492 [Gossypium barbadense]"]
["c35191.graph_c0","--","--","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: myosin complex (GO:0016459);; ","K10357|2.88704e-14|gra:105798591|K10357 myosin V | (RefSeq) myosin-8-like","[Z]","Cytoskeleton ","--","Myosin-8 OS=Arabidopsis thaliana OX=3702 GN=XI-B PE=3 SV=1","Z","Cytoskeleton","hypothetical protein B456_006G053100 [Gossypium raimondii]"]
["c36901.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107902777 [Gossypium hirsutum]"]
["c38384.graph_c0","--","--","--","K15361|3.38866e-18|gra:105783098|K15361 WD repeat-containing protein 48 | (RefSeq) WD repeat-containing protein 48-like","[S]","Function unknown ","--","--","S","Function unknown","hypothetical protein GOBAR_DD06362 [Gossypium barbadense]"]
["c45683.graph_c0","--","--","--","K13140|0|gra:105768723|K13140 integrator complex subunit 3 | (RefSeq) integrator complex subunit 3","[S]","Function unknown ","Integrator complex subunit 3","--","S","Function unknown","PREDICTED: integrator complex subunit 3 [Gossypium raimondii] "]
["c59888.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","K09338|3.96336e-37|gra:105791195|K09338 homeobox-leucine zipper protein | (RefSeq) homeobox-leucine zipper protein ANTHOCYANINLESS 2-like","--","--","--","Homeobox-leucine zipper protein HDG7 OS=Arabidopsis thaliana OX=3702 GN=HDG7 PE=2 SV=1","K","Transcription","hypothetical protein B456_004G120700 [Gossypium raimondii]"]
["c40657.graph_c0","--","--","Molecular Function: protein phosphatase inhibitor activity (GO:0004864);; Molecular Function: receptor activity (GO:0004872);; Cellular Component: nucleus (GO:0005634);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: abscisic acid-activated signaling pathway (GO:0009738);; Molecular Function: abscisic acid binding (GO:0010427);; Biological Process: regulation of protein serine/threonine phosphatase activity (GO:0080163);; ","--","--","--","--","Major allergen Pru ar 1 OS=Prunus armeniaca OX=36596 PE=1 SV=1","S","Function unknown","major allergen Pru av 1-like [Durio zibethinus]"]
["c43748.graph_c0","[K]","Transcription ","Molecular Function: O-methyltransferase activity (GO:0008171);; Biological Process: methylation (GO:0032259);; Molecular Function: protein dimerization activity (GO:0046983);; ","--","[R]","General function prediction only ","O-methyltransferase;; Dimerisation domain;; O-methyltransferase","Caffeic acid 3-O-methyltransferase OS=Ammi majus OX=48026 GN=COMT PE=1 SV=1","S","Function unknown","hypothetical protein B456_009G411600 [Gossypium raimondii]"]
["c36823.graph_c0","--","--","Biological Process: biological regulation (GO:0065007);; ","K18442|1.45019e-95|gra:105762694|K18442 brefeldin A-inhibited guanine nucleotide-exchange protein | (RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1","[U]","Intracellular trafficking, secretion, and vesicular transport ","--","Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana OX=3702 GN=BIG4 PE=3 SV=1","S","Function unknown","brefeldin A-inhibited guanine nucleotide-exchange protein 1-like isoform X2 [Durio zibethinus]"]
["c38357.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; ","K08909|3.06089e-129|mdm:103405098|K08909 light-harvesting complex I chlorophyll a/b binding protein 3 | (RefSeq) photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic","--","--","Chlorophyll A-B binding protein","Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA3 PE=1 SV=1","S","Function unknown","PREDICTED: photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic [Malus domestica]"]
["c24457.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; DYW family of nucleic acid deaminases;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Tetratricopeptide repeat","Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2","S","Function unknown","pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Durio zibethinus]"]
["c57111.graph_c0","--","--","--","--","--","--","Phosphate-induced protein 1 conserved region","Protein EXORDIUM-like 3 OS=Arabidopsis thaliana OX=3702 GN=EXL3 PE=2 SV=1","S","Function unknown","protein EXORDIUM-like 3 [Durio zibethinus]"]
["c89098.graph_c0","--","--","Cellular Component: photosystem I (GO:0009522);; Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Biological Process: photosynthesis, light harvesting (GO:0009765);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: chlorophyll binding (GO:0016168);; Biological Process: protein-chromophore linkage (GO:0018298);; Molecular Function: metal ion binding (GO:0046872);; ","K08915|1.09473e-42|csv:101208740|K08915 light-harvesting complex II chlorophyll a/b binding protein 4 | (RefSeq) chlorophyll a-b binding protein CP29.1, chloroplastic","--","--","Chlorophyll A-B binding protein","Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1","I","Lipid transport and metabolism","hypothetical protein LSAT_9X34120 [Lactuca sativa]"]
["c91943.graph_c0","[R]","General function prediction only ","--","--","--","--","--","--","S","Function unknown","beta-lactamase-like protein [Clohesyomyces aquaticus]"]
["c37671.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107935001 [Gossypium hirsutum]"]
["c41420.graph_c0","[F]","Nucleotide transport and metabolism ","Molecular Function: nucleoside diphosphate kinase activity (GO:0004550);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: nucleoside diphosphate phosphorylation (GO:0006165);; Biological Process: GTP biosynthetic process (GO:0006183);; Biological Process: UTP biosynthetic process (GO:0006228);; Biological Process: CTP biosynthetic process (GO:0006241);; Cellular Component: chloroplast stroma (GO:0009570);; Cellular Component: thylakoid (GO:0009579);; Biological Process: red, far-red light phototransduction (GO:0009585);; Biological Process: auxin-activated signaling pathway (GO:0009734);; Cellular Component: chloroplast envelope (GO:0009941);; Biological Process: response to hydrogen peroxide (GO:0042542);; ","K00940|4.28189e-84|gra:105800820|K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] | (RefSeq) nucleoside diphosphate kinase 2, chloroplastic","[F]","Nucleotide transport and metabolism ","Nucleoside diphosphate kinase","Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=NDPK2 PE=1 SV=1","F","Nucleotide transport and metabolism","PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Theobroma cacao]"]
["c60592.graph_c0","--","--","--","K09422|2.44225e-36|gra:105782572|K09422 myb proto-oncogene protein, plant | (RefSeq) myb-related protein 305-like","[K]","Transcription ","--","Transcription factor MYB63 OS=Arabidopsis thaliana OX=3702 GN=MYB63 PE=2 SV=1","K","Transcription","PREDICTED: myb-related protein 305-like [Gossypium raimondii] "]
["c93338.graph_c0","--","--","Molecular Function: actin binding (GO:0003779);; Biological Process: actin filament organization (GO:0007015);; Cellular Component: actin cytoskeleton (GO:0015629);; Cellular Component: cytoskeletal part (GO:0044430);; Biological Process: regulation of cellular component organization (GO:0051128);; Biological Process: regulation of biological quality (GO:0065008);; ","K17275|1.7133e-14|mus:103994136|K17275 plastin-1 | (RefSeq) fimbrin-2-like isoform X1","[Z]","Cytoskeleton ","Calponin homology (CH) domain","Fimbrin-3 OS=Arabidopsis thaliana OX=3702 GN=FIM3 PE=3 SV=1","Z","Cytoskeleton","hypothetical protein GUITHDRAFT_152308 [Guillardia theta CCMP2712] "]
["c37343.graph_c0","--","--","--","--","[T]","Signal transduction mechanisms ","--","Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1","--","--","hypothetical protein CDL12_07100 [Handroanthus impetiginosus]"]
["c16232.graph_c0","--","--","Biological Process: Group II intron splicing (GO:0000373);; Molecular Function: RNA binding (GO:0003723);; Cellular Component: chloroplast (GO:0009507);; Biological Process: chloroplast organization (GO:0009658);; ","--","--","--","--","Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_DD22842 [Gossypium barbadense]"]
["c91081.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108455289 [Gossypium arboreum]"]
["c59300.graph_c0","--","--","--","--","--","--","Group 7 allergen","--","--","--","--"]
["c80799.graph_c0","[CIR]","Energy production and conversion ;; Lipid transport and metabolism ;; General function prediction only ","Molecular Function: FMN binding (GO:0010181);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: heme binding (GO:0020037);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K11517|2.23618e-12|gsl:Gasu_11210|K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] | (RefSeq) (S)-2-hydroxy-acid oxidase","[C]","Energy production and conversion ","FMN-dependent dehydrogenase","Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana OX=3702 GN=GLO5 PE=1 SV=1","CI","--","hypothetical protein IQ06DRAFT_275567 [Stagonospora sp. SRC1lsM3a]"]
["c23629.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","K14944|1.23658e-09|gra:105777833|K14944 RNA-binding protein Nova | (RefSeq) RNA-binding protein Nova-1-like","[AR]","--","--","Protein BTR1 OS=Arabidopsis thaliana OX=3702 GN=BTR1 PE=1 SV=1","S","Function unknown","protein BTR1 isoform X3 [Prunus avium]"]
["c42716.graph_c0","--","--","--","--","--","--","Plant protein of unknown function (DUF868)","--","S","Function unknown","hypothetical protein GOBAR_DD06318 [Gossypium barbadense]"]
["c30985.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","--","--","--","--","DnaJ domain","DnaJ protein ERDJ2 OS=Oryza sativa subsp. japonica OX=39947 GN=ERDJ2 PE=3 SV=2","O","Posttranslational modification, protein turnover, chaperones","uncharacterized protein LOC110409633 [Herrania umbratica]"]
["c41466.graph_c0","--","--","Molecular Function: protein kinase activity (GO:0004672);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: negative regulation of secondary growth (GO:2000604);; ","--","--","--","Protein kinase domain;; Protein tyrosine kinase","Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD36049 [Gossypium barbadense]"]
["c52546.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; ","K02883|4.12337e-67|cvr:CHLNCDRAFT_37334|K02883 large subunit ribosomal protein L18e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein 60S L18 and 50S L18e","60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2","J","Translation, ribosomal structure and biogenesis","ribosomal protein L18e [Piromyces finnis]"]
["c39130.graph_c0","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K02218|9.31441e-52|gra:105793413|K02218 casein kinase 1 [EC:2.7.11.1] | (RefSeq) casein kinase I isoform delta-like","[T]","Signal transduction mechanisms ","--","Casein kinase 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=CKL1 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein B456_001G013300 [Gossypium raimondii]"]
["c41162.graph_c0","--","--","Molecular Function: transferase activity (GO:0016740);; ","--","--","--","--","Protein JASON OS=Arabidopsis thaliana OX=3702 GN=JASON PE=2 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105801948 isoform X1 [Gossypium raimondii] "]
["c29937.graph_c0","--","--","Molecular Function: binding (GO:0005488);; ","--","[R]","General function prediction only ","gag-polypeptide of LTR copia-type;; Chitin binding Peritrophin-A domain","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107952304 [Gossypium hirsutum]"]
["c32997.graph_c1","[E]","Amino acid transport and metabolism ","Molecular Function: transporter activity (GO:0005215);; Biological Process: oligopeptide transport (GO:0006857);; Cellular Component: integral component of membrane (GO:0016021);; ","K14638|1.60006e-156|gra:105788729|K14638 solute carrier family 15 (peptide/histidine transporter), member 3/4 | (RefSeq) protein NRT1/ PTR FAMILY 8.1-like","[E]","Amino acid transport and metabolism ","POT family","Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1","E","Amino acid transport and metabolism","protein NRT1/ PTR FAMILY 8.1-like [Herrania umbratica] "]
["c81131.graph_c0","--","--","Molecular Function: metal ion binding (GO:0046872);; ","K11982|5.11694e-20|gra:105779289|K11982 E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RNF149-like","--","--","--","--","--","--","PREDICTED: E3 ubiquitin-protein ligase RNF149-like [Gossypium hirsutum]"]
["c27846.graph_c0","--","--","--","K11294|2.83253e-06|mdm:103423705|K11294 nucleolin | (RefSeq) nucleolin 2-like","--","--","--","--","--","--","--"]
["c22335.graph_c0","--","--","--","--","--","--","--","--","--","--","Uncharacterized protein TCM_038540 [Theobroma cacao]"]
["c73150.graph_c0","--","--","--","--","[R]","General function prediction only ","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107911112 [Gossypium hirsutum]"]
["c46740.graph_c0","--","--","Molecular Function: zinc ion binding (GO:0008270);; ","K15687|0|gra:105790287|K15687 E3 ubiquitin-protein ligase makorin [EC:2.3.2.27] | (RefSeq) zinc finger CCCH domain-containing protein 69-like","[O]","Posttranslational modification, protein turnover, chaperones ","Zinc finger C-x8-C-x5-C-x3-H type (and similar);; Torus domain;; Zinc finger, C3HC4 type (RING finger);; Ring finger domain","Putative RING-type E3 ubiquitin transferase C3H69 OS=Arabidopsis thaliana OX=3702 GN=At3g63550 PE=3 SV=1","S","Function unknown","PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1 [Gossypium hirsutum]"]
["c58734.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic large ribosomal subunit (GO:0022625);; Biological Process: ribosomal large subunit biogenesis (GO:0042273);; ","K02875|5.79865e-39|ppp:PHYPADRAFT_185490|K02875 large subunit ribosomal protein L14e | (RefSeq) hypothetical protein","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein L14","60S ribosomal protein L14-1 OS=Arabidopsis thaliana OX=3702 GN=RPL14A PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","60 ribosomal protein L14 [Zea mays]"]
["c84209.graph_c0","[E]","Amino acid transport and metabolism ","Molecular Function: homocitrate synthase activity (GO:0004410);; Cellular Component: cytosol (GO:0005829);; Biological Process: lysine biosynthetic process via aminoadipic acid (GO:0019878);; ","--","[E]","Amino acid transport and metabolism ","HMGL-like","--","E","Amino acid transport and metabolism","hypothetical protein SCLCIDRAFT_32364 [Scleroderma citrinum Foug A]"]
["c17718.graph_c1","--","--","Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: transferase activity (GO:0016740);; ","--","--","--","--","--","S","Function unknown","uncharacterized protein LOC110412491 [Herrania umbratica] "]
["c4548.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Biological Process: ribosomal small subunit assembly (GO:0000028);; Biological Process: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (GO:0000462);; Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; Molecular Function: mRNA 5'-UTR binding (GO:0048027);; Molecular Function: small ribosomal subunit rRNA binding (GO:0070181);; ","K02955|1.93791e-36|nnu:104607294|K02955 small subunit ribosomal protein S14e | (RefSeq) 40S ribosomal protein S14-like","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S11","40S ribosomal protein S14 OS=Lupinus luteus OX=3873 GN=RPS14 PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","uncharacterized protein A4U43_C02F8250, partial [Asparagus officinalis]"]
["c34383.graph_c0","--","--","--","K06943|6.70743e-39|gmx:100784033|K06943 nucleolar GTP-binding protein | (RefSeq) nucleolar GTP-binding protein 1-like","[R]","General function prediction only ","NOGCT (NUC087) domain;; Nucleolar GTP-binding protein 1 (NOG1)","Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g50920 PE=2 SV=1","S","Function unknown","GTP binding protein 4 [Neolentinus lepideus HHB14362 ss-1]"]
["c74512.graph_c0","--","--","--","--","--","--","--","--","--","--","filament-like plant protein 4 isoform X1 [Durio zibethinus]"]
["c39573.graph_c1","--","--","Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553);; Biological Process: carbohydrate metabolic process (GO:0005975);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Glycosyl hydrolases family 17","Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana OX=3702 GN=At1g32860 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Gossypium arboreum] "]
["c46788.graph_c1","--","--","Biological Process: vesicle docking involved in exocytosis (GO:0006904);; ","K12479|0|tcc:TCM_035451|K12479 vacuolar protein sorting-associated protein 45 | (RefSeq) Vacuolar protein sorting 45","[U]","Intracellular trafficking, secretion, and vesicular transport ","Sec1 family;; Sec1 family","Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS45 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","vacuolar protein sorting-associated protein 45 homolog [Herrania umbratica]"]
["c32967.graph_c0","--","--","Cellular Component: Golgi apparatus (GO:0005794);; Biological Process: intracellular protein transport (GO:0006886);; Molecular Function: protein transporter activity (GO:0008565);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: vesicle-mediated transport (GO:0016192);; Cellular Component: clathrin adaptor complex (GO:0030131);; ","K11824|9.09501e-74|dosa:Os03t0112101-00|K11824 AP-2 complex subunit alpha | (RAP-DB) Os03g0112101; Similar to Adaptin N terminal region family protein, expressed.","[U]","Intracellular trafficking, secretion, and vesicular transport ","Adaptin N terminal region","AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=ALPHA-ADR PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein MIMGU_mgv1a0014941mg, partial [Erythranthe guttata]"]
["c42148.graph_c1","--","--","Molecular Function: ATP binding (GO:0005524);; Molecular Function: ADP binding (GO:0043531);; ","--","--","--","--","--","S","Function unknown","PREDICTED: disease resistance protein At4g27190-like [Gossypium hirsutum]"]
["c42832.graph_c0","[R]","General function prediction only ","Molecular Function: GTP binding (GO:0005525);; Cellular Component: intracellular (GO:0005622);; Biological Process: small GTPase mediated signal transduction (GO:0007264);; ","K07877|7.11965e-123|mdm:103414515|K07877 Ras-related protein Rab-2A | (RefSeq) ras-related protein RABB1c-like","[U]","Intracellular trafficking, secretion, and vesicular transport ","Ras family;; Ras of Complex, Roc, domain of DAPkinase;; ADP-ribosylation factor family;; 50S ribosome-binding GTPase","Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1","S","Function unknown","PREDICTED: ras-related protein RABB1c-like [Malus domestica]"]
["c93266.graph_c0","[F]","Nucleotide transport and metabolism ","--","K10807|4.59834e-11|pop:POPTR_0005s21680g|K10807 ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1] | (RefSeq) POPTRDRAFT_559402; hypothetical protein","[F]","Nucleotide transport and metabolism ","Ribonucleotide reductase, barrel domain","Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana OX=3702 GN=RNR1 PE=1 SV=1","F","Nucleotide transport and metabolism","hypothetical protein HETIRDRAFT_474917 [Heterobasidion irregulare TC 32-1] "]
["c25721.graph_c0","--","--","Biological Process: protein methylation (GO:0006479);; Molecular Function: methyltransferase activity (GO:0008168);; ","K11434|3.09997e-36|gra:105769948|K11434 type I protein arginine methyltransferase [EC:2.1.1.319] | (RefSeq) probable protein arginine N-methyltransferase 1.2","[OKT]","--","--","Probable protein arginine N-methyltransferase 1.2 OS=Arabidopsis thaliana OX=3702 GN=PRMT12 PE=1 SV=1","S","Function unknown","PREDICTED: probable protein arginine N-methyltransferase 1.2 [Gossypium hirsutum]"]
["c23383.graph_c1","--","--","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K04733|8.87161e-159|gra:105773932|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) cysteine-rich receptor-like protein kinase 10","--","--","Salt stress response/antifungal","Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana OX=3702 GN=CRK14 PE=2 SV=2","T","Signal transduction mechanisms","hypothetical protein GOBAR_DD03241 [Gossypium barbadense]"]
["c46203.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: calcium-transporting ATPase activity (GO:0005388);; Molecular Function: calmodulin binding (GO:0005516);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: endoplasmic reticulum (GO:0005783);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: chloroplast inner membrane (GO:0009706);; Cellular Component: integral component of membrane (GO:0016021);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: calcium ion transmembrane transport (GO:0070588);; ","K01537|0|gra:105773400|K01537 Ca2+-transporting ATPase [EC:3.6.3.8] | (RefSeq) calcium-transporting ATPase 1, chloroplastic-like","[P]","Inorganic ion transport and metabolism ","Cation transporting ATPase, C-terminus;; Cation transport ATPase (P-type);; haloacid dehalogenase-like hydrolase;; haloacid dehalogenase-like hydrolase;; Cation transporting ATPase, C-terminus","Calcium-transporting ATPase 1 OS=Arabidopsis thaliana OX=3702 GN=ACA1 PE=1 SV=3","P","Inorganic ion transport and metabolism","calcium-transporting ATPase 1-like isoform X2 [Durio zibethinus]"]
["c41072.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; Cellular Component: integral component of membrane (GO:0016021);; ","K04733|0|gra:105769857|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) putative serine/threonine-protein kinase","[T]","Signal transduction mechanisms ","Protein tyrosine kinase;; Protein kinase domain","Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA04671 [Gossypium barbadense]"]
["c28121.graph_c0","--","--","--","--","[S]","Function unknown ","--","--","S","Function unknown","uncharacterized protein LOC111301632 isoform X2 [Durio zibethinus]"]
["c39792.graph_c1","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: RNA binding (GO:0003723);; Molecular Function: catalytic activity (GO:0003824);; Biological Process: metabolic process (GO:0008152);; ","K18666|2.07925e-54|gra:105788048|K18666 activating signal cointegrator complex subunit 1 | (RefSeq) uncharacterized LOC105788048","[K]","Transcription ","AKAP7 2'5' RNA ligase-like domain;; KH domain;; AKAP7 2'5' RNA ligase-like domain","Probable inactive nicotinamidase At3g16190 OS=Arabidopsis thaliana OX=3702 GN=At3g16190 PE=2 SV=1","Q","Secondary metabolites biosynthesis, transport and catabolism","PREDICTED: uncharacterized protein LOC107950695 isoform X2 [Gossypium hirsutum] "]
["c29689.graph_c0","--","--","Cellular Component: chloroplast thylakoid membrane (GO:0009535);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Protein of unknown function (DUF3464);; Heavy-metal-associated domain","Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1","S","Function unknown","uncharacterized protein PAM68-like [Durio zibethinus]"]
["c40544.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: trehalose-phosphatase activity (GO:0004805);; Biological Process: trehalose biosynthetic process (GO:0005992);; Biological Process: dephosphorylation (GO:0016311);; ","K01087|1.42711e-99|gra:105788604|K01087 trehalose 6-phosphate phosphatase [EC:3.1.3.12] | (RefSeq) trehalose-phosphate phosphatase A-like","[G]","Carbohydrate transport and metabolism ","Trehalose-phosphatase","Probable trehalose-phosphate phosphatase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPP2 PE=1 SV=1","G","Carbohydrate transport and metabolism","PREDICTED: trehalose-phosphate phosphatase A-like [Gossypium arboreum]"]
["c32764.graph_c0","--","--","Biological Process: lipid metabolic process (GO:0006629);; ","--","[IOT]","--","Lipase (class 3);; Lipase 3 N-terminal region","--","S","Function unknown","uncharacterized protein LOC105648455 isoform X1 [Jatropha curcas]"]
["c28644.graph_c0","--","--","Molecular Function: calcium ion binding (GO:0005509);; Biological Process: misfolded or incompletely synthesized protein catabolic process (GO:0006515);; Biological Process: apoptotic process (GO:0006915);; Cellular Component: integral component of endoplasmic reticulum membrane (GO:0030176);; Biological Process: ubiquitin-dependent ERAD pathway (GO:0030433);; Biological Process: endoplasmic reticulum unfolded protein response (GO:0030968);; Biological Process: protein folding in endoplasmic reticulum (GO:0034975);; Molecular Function: unfolded protein binding (GO:0051082);; ","K08057|2.42335e-14|cic:CICLE_v10011848mg|K08057 calreticulin | (RefSeq) hypothetical protein","[O]","Posttranslational modification, protein turnover, chaperones ","Calreticulin family","Calreticulin OS=Berberis stolonifera OX=33814 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Calreticulin family-domain-containing protein [Absidia repens]"]
["c46775.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: tRNA binding (GO:0000049);; Molecular Function: alanine-tRNA ligase activity (GO:0004813);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: mitochondrion (GO:0005739);; Molecular Function: zinc ion binding (GO:0008270);; Cellular Component: chloroplast stroma (GO:0009570);; Biological Process: embryo development ending in seed dormancy (GO:0009793);; Cellular Component: membrane (GO:0016020);; Biological Process: mitochondrial alanyl-tRNA aminoacylation (GO:0070143);; ","K01872|0|gra:105795436|K01872 alanyl-tRNA synthetase [EC:6.1.1.7] | (RefSeq) probable alanine--tRNA ligase, chloroplastic","[J]","Translation, ribosomal structure and biogenesis ","tRNA synthetases class II (A);; DHHA1 domain;; Threonyl and Alanyl tRNA synthetase second additional domain;; tRNA synthetases class II (A);; tRNA synthetases class II (A)","Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_821063 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: alanine--tRNA ligase, chloroplastic/mitochondrial-like isoform X2 [Gossypium hirsutum]"]
["c44650.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: ATP binding (GO:0005524);; Molecular Function: microtubule-severing ATPase activity (GO:0008568);; ","K17681|7.59563e-116|gra:105803793|K17681 ATPase family AAA domain-containing protein 3A/B | (RefSeq) ATPase family AAA domain-containing protein 3C-like","[O]","Posttranslational modification, protein turnover, chaperones ","Domain of unknown function (DUF3523);; ATPase family associated with various cellular activities (AAA);; Domain of unknown function (DUF3523);; ATPase family associated with various cellular activities (AAA);; Magnesium chelatase, subunit ChlI","Cell division control protein 48 homolog D OS=Arabidopsis thaliana OX=3702 GN=CDC48D PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: ATPase family AAA domain-containing protein 3C-like [Gossypium hirsutum]"]
["c36873.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein COLO4_09348 [Corchorus olitorius]"]
["c49936.graph_c0","--","--","Molecular Function: magnesium ion binding (GO:0000287);; Molecular Function: phospholipid-translocating ATPase activity (GO:0004012);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: phospholipid translocation (GO:0045332);; ","K01530|0|gra:105767354|K01530 phospholipid-translocating ATPase [EC:3.6.3.1] | (RefSeq) putative phospholipid-transporting ATPase 4","[R]","General function prediction only ","Phospholipid-translocating ATPase N-terminal;; Cation transport ATPase (P-type);; E1-E2 ATPase","Probable phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana OX=3702 GN=ALA4 PE=3 SV=2","P","Inorganic ion transport and metabolism","hypothetical protein B456_009G142500 [Gossypium raimondii]"]
["c41975.graph_c0","--","--","Molecular Function: helicase activity (GO:0004386);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: response to oxidative stress (GO:0006979);; Biological Process: pollen development (GO:0009555);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1","S","Function unknown","PREDICTED: uncharacterized protein LOC105777676 [Gossypium raimondii] "]
["c59374.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA39358 [Gossypium barbadense]"]
["c27038.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat family;; PPR repeat;; PPR repeat;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP;; Mitochondrial 28S ribosomal protein S27","Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR40 PE=3 SV=1","S","Function unknown","PREDICTED: putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [Gossypium arboreum]"]
["c95663.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein FOZG_05856 [Fusarium oxysporum Fo47]"]
["c33630.graph_c0","--","--","--","--","--","--","Weak chloroplast movement under blue light","WEB family protein At2g40480 OS=Arabidopsis thaliana OX=3702 GN=At2g40480 PE=2 SV=1","S","Function unknown","PREDICTED: WEB family protein At2g40480-like [Gossypium raimondii] "]
["c39337.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Domain of unknown function (DUF4228)","--","S","Function unknown","hypothetical protein GOBAR_DD35610 [Gossypium barbadense]"]
["c63726.graph_c0","--","--","--","--","--","--","--","--","--","--","hypothetical protein T459_29284 [Capsicum annuum]"]
["c90521.graph_c0","[G]","Carbohydrate transport and metabolism ","--","K01803|1.31907e-06|ppp:PHYPADRAFT_150455|K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] | (RefSeq) hypothetical protein","[G]","Carbohydrate transport and metabolism ","Triosephosphate isomerase","Triosephosphate isomerase, cytosolic OS=Secale cereale OX=4550 PE=2 SV=3","G","Carbohydrate transport and metabolism","unnamed protein product [Triticum aestivum]"]
["c42307.graph_c0","--","--","Molecular Function: ATP binding (GO:0005524);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; Biological Process: developmental process (GO:0032502);; ","--","--","--","--","Growth-regulating factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=GRF6 PE=2 SV=2","K","Transcription","growth-regulating factor 1-like [Herrania umbratica]"]
["c43041.graph_c0","[B]","Chromatin structure and dynamics ","Molecular Function: DNA binding (GO:0003677);; ","K15223|2.04392e-178|gra:105772179|K15223 upstream activation factor subunit UAF30 | (RefSeq) uncharacterized LOC105772179","[K]","Transcription ","SWIB/MDM2 domain;; DEK C terminal domain","--","B","Chromatin structure and dynamics","PREDICTED: uncharacterized protein LOC108480426 [Gossypium arboreum] "]
["c6835.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: phosphorelay sensor kinase activity (GO:0000155);; Biological Process: phosphorelay signal transduction system (GO:0000160);; Cellular Component: intracellular (GO:0005622);; Cellular Component: plasma membrane (GO:0005886);; Cellular Component: plasmodesma (GO:0009506);; Biological Process: embryo sac development (GO:0009553);; Biological Process: phloem or xylem histogenesis (GO:0010087);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: peptidyl-histidine phosphorylation (GO:0018106);; Biological Process: signal transduction by protein phosphorylation (GO:0023014);; Molecular Function: protein homodimerization activity (GO:0042803);; Biological Process: secondary growth (GO:0080117);; ","--","[T]","Signal transduction mechanisms ","His Kinase A (phospho-acceptor) domain","Histidine kinase CKI1 OS=Arabidopsis thaliana OX=3702 GN=CKI1 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: histidine kinase CKI1-like [Gossypium arboreum]"]
["c52690.graph_c0","--","--","--","--","--","--","Plastocyanin-like domain","Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1","S","Function unknown","PREDICTED: basic blue protein-like [Gossypium hirsutum] "]
["c42394.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","K09660|5.06932e-86|tcc:TCM_033769|K09660 mannose-P-dolichol utilization defect 1 | (RefSeq) Mannose-P-dolichol utilization defect 1 protein isoform 1","[R]","General function prediction only ","PQ loop repeat","Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At4g07390 PE=2 SV=1","S","Function unknown","mannose-P-dolichol utilization defect 1 protein homolog 2 [Herrania umbratica]"]
["c41357.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","TLC domain-containing protein At5g14285 OS=Arabidopsis thaliana OX=3702 GN=At5g14285 PE=2 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","PREDICTED: uncharacterized protein LOC107892187 [Gossypium hirsutum]"]
["c87856.graph_c0","--","--","Molecular Function: chaperone binding (GO:0051087);; ","--","--","--","--","--","--","--","BCL-2-associated athanogene 4 isoform 3 [Theobroma cacao]"]
["c10169.graph_c1","--","--","Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435);; Molecular Function: signal transducer activity (GO:0004871);; Cellular Component: intracellular (GO:0005622);; Biological Process: lipid catabolic process (GO:0016042);; Biological Process: intracellular signal transduction (GO:0035556);; ","K05857|5.61717e-99|gra:105777827|K05857 phosphatidylinositol phospholipase C, delta [EC:3.1.4.11] | (RefSeq) phosphoinositide phospholipase C 2-like","[T]","Signal transduction mechanisms ","C2 domain;; Phosphatidylinositol-specific phospholipase C, Y domain","Phosphoinositide phospholipase C 7 OS=Arabidopsis thaliana OX=3702 GN=PLC7 PE=1 SV=1","S","Function unknown","PREDICTED: phosphoinositide phospholipase C 2-like [Gossypium arboreum]"]
["c50298.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","hypothetical protein GOBAR_DD01518 [Gossypium barbadense]"]
["c17360.graph_c0","--","--","Cellular Component: mitochondrion (GO:0005739);; Cellular Component: cytosol (GO:0005829);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: glycerol ether metabolic process (GO:0006662);; Molecular Function: protein disulfide oxidoreductase activity (GO:0015035);; Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor (GO:0016671);; Biological Process: cell redox homeostasis (GO:0045454);; Biological Process: oxidation-reduction process (GO:0055114);; ","K03671|3.23819e-19|tcc:TCM_018331|K03671 thioredoxin 1 | (RefSeq) Thioredoxin 2","[O]","Posttranslational modification, protein turnover, chaperones ","--","Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","Thioredoxin H2 -like protein [Gossypium arboreum]"]
["c18890.graph_c0","--","--","Molecular Function: DNA binding (GO:0003677);; Cellular Component: nucleus (GO:0005634);; Biological Process: regulation of transcription, DNA-templated (GO:0006355);; ","--","--","--","--","--","--","--","hypothetical protein GOBAR_AA21719 [Gossypium barbadense]"]
["c50244.graph_c0","--","--","Molecular Function: motor activity (GO:0003774);; Molecular Function: actin binding (GO:0003779);; Molecular Function: ATP binding (GO:0005524);; Cellular Component: myosin complex (GO:0016459);; ","K10357|1.99129e-34|gra:105779639|K10357 myosin V | (RefSeq) myosin-2-like","[Z]","Cytoskeleton ","--","Myosin-1 OS=Arabidopsis thaliana OX=3702 GN=VIII-1 PE=1 SV=1","Z","Cytoskeleton","myosin-2-like isoform X2 [Durio zibethinus]"]
["c44188.graph_c1","--","--","--","K12471|8.16597e-87|tcc:TCM_020085|K12471 epsin | (RefSeq) ENTH/VHS family protein, putative isoform 1","--","--","--","Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana OX=3702 GN=EPSIN2 PE=1 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","clathrin interactor EPSIN 3-like isoform X6 [Durio zibethinus]"]
["c37625.graph_c0","[C]","Energy production and conversion ","Biological Process: carbohydrate metabolic process (GO:0005975);; Biological Process: malate metabolic process (GO:0006108);; Molecular Function: L-malate dehydrogenase activity (GO:0030060);; Biological Process: oxidation-reduction process (GO:0055114);; ","K00026|8.99264e-107|gra:105788417|K00026 malate dehydrogenase [EC:1.1.1.37] | (RefSeq) malate dehydrogenase, chloroplastic","[C]","Energy production and conversion ","lactate/malate dehydrogenase, NAD binding domain","Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g47520 PE=1 SV=1","C","Energy production and conversion","malate dehydrogenase, chloroplastic [Durio zibethinus]"]
["c9057.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: uncharacterized protein LOC107947129 [Gossypium hirsutum]"]
["c70483.graph_c0","--","--","--","--","--","--","F-box domain","Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: F-box protein CPR30-like [Gossypium hirsutum]"]
["c18453.graph_c0","--","--","Molecular Function: palmitoyl hydrolase activity (GO:0098599);; Biological Process: macromolecule depalmitoylation (GO:0098734);; ","K01074|2.90452e-19|tcc:TCM_015914|K01074 palmitoyl-protein thioesterase [EC:3.1.2.22] | (RefSeq) Alpha/beta-Hydrolases superfamily protein isoform 1","--","--","--","--","--","--","Alpha/beta-Hydrolases superfamily protein isoform 1 [Theobroma cacao]"]
["c28965.graph_c0","--","--","Cellular Component: membrane (GO:0016020);; ","--","--","--","NPH3 family","BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1","S","Function unknown","hypothetical protein GOBAR_AA15716 [Gossypium barbadense]"]
["c77658.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","Molecular Function: structural constituent of ribosome (GO:0003735);; Biological Process: rRNA export from nucleus (GO:0006407);; Biological Process: translation (GO:0006412);; Cellular Component: cytosolic small ribosomal subunit (GO:0022627);; ","K02979|1.3493e-17|csl:COCSUDRAFT_33870|K02979 small subunit ribosomal protein S28e | (RefSeq) ribosomal protein S28e","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal protein S28e","40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1","J","Translation, ribosomal structure and biogenesis","ribosomal protein S28e [Coccomyxa subellipsoidea C-169] "]
["c28540.graph_c0","[G]","Carbohydrate transport and metabolism ","--","--","[G]","Carbohydrate transport and metabolism ","--","--","G","Carbohydrate transport and metabolism","PREDICTED: probable alpha-glucosidase [Ziziphus jujuba]"]
["c3533.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332);; Molecular Function: uridine kinase activity (GO:0004849);; Molecular Function: ATP binding (GO:0005524);; Biological Process: glycolytic process (GO:0006096);; Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757);; Biological Process: UMP salvage (GO:0044206);; Biological Process: CTP salvage (GO:0044211);; ","K01623|9.51263e-32|sly:101243907|K01623 fructose-bisphosphate aldolase, class I [EC:4.1.2.13] | (RefSeq) SlFBA6; fructose 1,6-bisphosphate aldolase","[G]","Carbohydrate transport and metabolism ","Fructose-bisphosphate aldolase class-I","Fructose-bisphosphate aldolase 5, cytosolic OS=Arabidopsis thaliana OX=3702 GN=FBA5 PE=1 SV=1","G","Carbohydrate transport and metabolism","fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [Solanum lycopersicum]"]
["c79499.graph_c0","[P]","Inorganic ion transport and metabolism ","Molecular Function: calcium:proton antiporter activity (GO:0015369);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: calcium ion transmembrane transport (GO:0070588);; ","K07300|1.05232e-47|fve:101307313|K07300 Ca2+:H+ antiporter | (RefSeq) vacuolar cation/proton exchanger 3","[P]","Inorganic ion transport and metabolism ","Sodium/calcium exchanger protein","Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana OX=3702 GN=CAX3 PE=1 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: vacuolar cation/proton exchanger 3 [Fragaria vesca subsp. vesca]"]
["c23734.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105783404 isoform X1 [Gossypium raimondii] "]
["c17749.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107899415 [Gossypium hirsutum] "]
["c47739.graph_c0","--","--","Cellular Component: chromosome, centromeric region (GO:0000775);; Cellular Component: vacuolar membrane (GO:0005774);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: mitotic cell cycle (GO:0007067);; ","K11548|0|gra:105769485|K11548 kinetochore protein Nuf2 | (RefSeq) probable kinetochore protein NUF2","[D]","Cell cycle control, cell division, chromosome partitioning ","Nuf2 family;; Nuf2 family","--","S","Function unknown","PREDICTED: probable kinetochore protein NUF2 isoform X2 [Gossypium raimondii]"]
["c49094.graph_c0","[HR]","Coenzyme transport and metabolism ;; General function prediction only ","Molecular Function: actin binding (GO:0003779);; Biological Process: actin filament organization (GO:0007015);; Biological Process: regulation of stomatal movement (GO:0010119);; Molecular Function: hydrolase activity (GO:0016787);; ","--","--","--","Alpha/beta hydrolase family;; alpha/beta hydrolase fold;; Serine aminopeptidase, S33;; Chlorophyllase enzyme;; Chlorophyllase;; Fused Ig-PH domain of plant-specific actin-binding protein;; Coiled-coil regions of plant-specific actin-binding protein;; Coiled-coil regions of plant-specific actin-binding protein;; Actin-binding domain of plant-specific actin-binding protein","Stomatal closure-related actin-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=SCAB1 PE=1 SV=1","S","Function unknown","hypothetical protein GOBAR_DD01950 [Gossypium barbadense]"]
["c92274.graph_c0","[K]","Transcription ","--","--","--","--","--","--","K","Transcription","--"]
["c39892.graph_c1","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107910599 isoform X7 [Gossypium hirsutum] "]
["c18493.graph_c0","--","--","--","--","[O]","Posttranslational modification, protein turnover, chaperones ","Kunitz/Bovine pancreatic trypsin inhibitor domain;; Lipocalin / cytosolic fatty-acid binding protein family","--","O","Posttranslational modification, protein turnover, chaperones","unnamed protein product [Chondrus crispus] "]
["c72216.graph_c0","--","--","Molecular Function: protein binding (GO:0005515);; Biological Process: plant-type hypersensitive response (GO:0009626);; Cellular Component: extrinsic component of plasma membrane (GO:0019897);; Molecular Function: ADP binding (GO:0043531);; ","K13457|1.88247e-08|tcc:TCM_025696|K13457 disease resistance protein RPM1 | (RefSeq) Disease resistance protein RPM1, putative isoform 1","[T]","Signal transduction mechanisms ","--","Disease resistance protein RPM1 OS=Arabidopsis thaliana OX=3702 GN=RPM1 PE=1 SV=1","S","Function unknown","disease resistance protein RPM1-like [Durio zibethinus]"]
["c42111.graph_c0","--","--","Molecular Function: aspartic-type endopeptidase activity (GO:0004190);; Biological Process: proteolysis (GO:0006508);; Biological Process: protein catabolic process (GO:0030163);; ","--","[O]","Posttranslational modification, protein turnover, chaperones ","Xylanase inhibitor N-terminal;; Xylanase inhibitor C-terminal;; Eukaryotic aspartyl protease","Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis OX=150966 GN=nep1 PE=1 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: aspartic proteinase nepenthesin-1-like [Gossypium hirsutum]"]
["c83855.graph_c0","--","--","Molecular Function: choline dehydrogenase activity (GO:0008812);; Molecular Function: flavin adenine dinucleotide binding (GO:0050660);; Biological Process: oxidation-reduction process (GO:0055114);; ","--","--","--","GMC oxidoreductase","--","E","Amino acid transport and metabolism","hypothetical protein B5807_02709 [Epicoccum nigrum]"]
["c51018.graph_c0","[Q]","Secondary metabolites biosynthesis, transport and catabolism ","Molecular Function: oxidoreductase activity (GO:0016491);; Molecular Function: metal ion binding (GO:0046872);; Biological Process: oxidation-reduction process (GO:0055114);; ","K06892|0|gra:105784310|K06892 feruloyl-CoA ortho-hydroxylase [EC:1.14.11.-] | (RefSeq) feruloyl CoA ortho-hydroxylase 1-like","[QR]","--","2OG-Fe(II) oxygenase superfamily;; non-haem dioxygenase in morphine synthesis N-terminal","Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana OX=3702 GN=F6&apos;H1 PE=1 SV=1","S","Function unknown","PREDICTED: feruloyl CoA ortho-hydroxylase 1-like isoform X1 [Gossypium arboreum]"]
["c3965.graph_c0","--","--","--","--","--","--","--","--","--","--","PREDICTED: pathogenesis-related protein 5-like [Gossypium raimondii] "]
["c51588.graph_c0","--","--","Molecular Function: zinc ion transmembrane transporter activity (GO:0005385);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: zinc II ion transmembrane transport (GO:0071577);; ","K14709|0|gra:105777311|K14709 solute carrier family 39 (zinc transporter), member 1/2/3 | (RefSeq) fe(2+) transport protein 1-like","[P]","Inorganic ion transport and metabolism ","ZIP Zinc transporter","Probable zinc transporter 8 OS=Arabidopsis thaliana OX=3702 GN=ZIP8 PE=3 SV=1","P","Inorganic ion transport and metabolism","PREDICTED: fe(2+) transport protein 1-like [Gossypium hirsutum] "]
["c27236.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: phosphorelay sensor kinase activity (GO:0000155);; Cellular Component: endoplasmic reticulum membrane (GO:0005789);; Biological Process: negative regulation of ethylene-activated signaling pathway (GO:0010105);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: peptidyl-histidine phosphorylation (GO:0018106);; Biological Process: signal transduction by protein phosphorylation (GO:0023014);; Molecular Function: ethylene receptor activity (GO:0038199);; Molecular Function: ethylene binding (GO:0051740);; ","K14509|4.41906e-31|gra:105796708|K14509 ethylene receptor [EC:2.7.13.-] | (RefSeq) ethylene receptor 2","[T]","Signal transduction mechanisms ","Response regulator receiver domain","Protein EIN4 OS=Arabidopsis thaliana OX=3702 GN=EIN4 PE=1 SV=1","T","Signal transduction mechanisms","hypothetical protein GOBAR_AA31063 [Gossypium barbadense]"]
["c5471.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105798244 [Gossypium raimondii] "]
["c32838.graph_c1","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Cellular Component: ribosome (GO:0005840);; Biological Process: translation (GO:0006412);; ","K13993|5.28299e-13|cam:101490951|K13993 HSP20 family protein | (RefSeq) 18.2 kDa class I heat shock protein-like","[O]","Posttranslational modification, protein turnover, chaperones ","--","18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","17.3 kDa class I heat shock protein-like [Cajanus cajan]"]
["c36401.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC108474857 [Gossypium arboreum]"]
["c8505.graph_c0","[O]","Posttranslational modification, protein turnover, chaperones ","Molecular Function: glutathione transferase activity (GO:0004364);; Cellular Component: cytoplasm (GO:0005737);; Biological Process: glutathione metabolic process (GO:0006749);; Biological Process: toxin catabolic process (GO:0009407);; ","K00799|1.18499e-102|gra:105804345|K00799 glutathione S-transferase [EC:2.5.1.18] | (RefSeq) probable glutathione S-transferase","[O]","Posttranslational modification, protein turnover, chaperones ","Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, N-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, C-terminal domain;; Glutathione S-transferase, C-terminal domain","Probable glutathione S-transferase OS=Glycine max OX=3847 GN=HSP26-A PE=2 SV=1","O","Posttranslational modification, protein turnover, chaperones","PREDICTED: probable glutathione S-transferase [Gossypium hirsutum]"]
["c26789.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","Tetraspanin family","Tetraspanin-10 OS=Arabidopsis thaliana OX=3702 GN=TET10 PE=2 SV=1","S","Function unknown","hypothetical protein B456_004G209600 [Gossypium raimondii]"]
["c58301.graph_c0","[J]","Translation, ribosomal structure and biogenesis ","--","K02898|1.5434e-47|egr:104418444|K02898 large subunit ribosomal protein L26e | (RefSeq) 60S ribosomal protein L26-1","[J]","Translation, ribosomal structure and biogenesis ","Ribosomal proteins L26 eukaryotic, L24P archaeal;; KOW motif","60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1","J","Translation, ribosomal structure and biogenesis","PREDICTED: 60S ribosomal protein L26-1-like [Nicotiana tabacum]"]
["c41791.graph_c0","--","--","--","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC18611988 isoform X1 [Theobroma cacao]"]
["c35405.graph_c0","--","--","Cellular Component: integral component of membrane (GO:0016021);; ","--","--","--","--","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107886648 [Gossypium hirsutum]"]
["c7838.graph_c0","--","--","Molecular Function: RNA binding (GO:0003723);; ","K11884|3.54544e-48|gra:105782232|K11884 RNA-binding protein PNO1 | (RefSeq) RNA-binding protein pno1-like","[O]","Posttranslational modification, protein turnover, chaperones ","KH domain","--","S","Function unknown","RNA-binding pno1 [Gossypium arboreum]"]
["c39675.graph_c0","--","--","--","--","[R]","General function prediction only ","PPR repeat;; PPR repeat family;; Pentatricopeptide repeat domain;; Pentacotripeptide-repeat region of PRORP","Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana OX=3702 GN=At1g02150 PE=2 SV=2","S","Function unknown","PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Gossypium arboreum] "]
["c46962.graph_c1","[C]","Energy production and conversion ","Cellular Component: mitochondrial respiratory chain complex I (GO:0005747);; Cellular Component: plasma membrane (GO:0005886);; Biological Process: mitochondrial electron transport, NADH to ubiquinone (GO:0006120);; Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137);; Cellular Component: integral component of membrane (GO:0016021);; ","K03878|1.31875e-126|osa:6450162|K03878 NADH-ubiquinone oxidoreductase chain 1 [EC:1.6.5.3] | (RefSeq) nad1, OrsajM_p01; NADH dehydrogenase subunit 1","[C]","Energy production and conversion ","NADH dehydrogenase","NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana OX=3950 GN=ND1 PE=2 SV=1","C","Energy production and conversion","NADH dehydrogenase subunit 1 (mitochondrion) [Vaccinium macrocarpon] "]
["c35867.graph_c0","--","--","--","--","--","--","Lines C-terminus;; Lines N-terminus","--","S","Function unknown","PREDICTED: uncharacterized protein LOC105763330 [Gossypium raimondii] "]
["c78907.graph_c0","[C]","Energy production and conversion ","Biological Process: mitochondrial genome maintenance (GO:0000002);; Molecular Function: double-stranded DNA binding (GO:0003690);; Molecular Function: single-stranded DNA binding (GO:0003697);; Molecular Function: aconitate hydratase activity (GO:0003994);; Cellular Component: cytosol (GO:0005829);; Biological Process: tricarboxylic acid cycle (GO:0006099);; Cellular Component: mitochondrial nucleoid (GO:0042645);; Molecular Function: metal ion binding (GO:0046872);; Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539);; ","K01681|2.55915e-39|csl:COCSUDRAFT_27212|K01681 aconitate hydratase [EC:4.2.1.3] | (RefSeq) aconitate hydratase","[CE]","--","Aconitase family (aconitate hydratase)","Aconitate hydratase, mitochondrial OS=Gracilaria gracilis OX=2777 PE=3 SV=1","C","Energy production and conversion","putative aconitase [Tilletiaria anomala UBC 951] "]
["c24664.graph_c2","--","--","--","--","--","--","--","Protein NETWORKED 2A OS=Arabidopsis thaliana OX=3702 GN=NET2A PE=2 SV=1","--","--","Kinase interacting family protein, putative [Theobroma cacao]"]
["c10182.graph_c0","[R]","General function prediction only ","Molecular Function: selenium binding (GO:0008430);; ","K17285|1.19594e-126|gra:105796481|K17285 selenium-binding protein 1 | (RefSeq) selenium-binding protein 2-like","[P]","Inorganic ion transport and metabolism ","56kDa selenium binding protein (SBP56);; 56kDa selenium binding protein (SBP56)","Selenium-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=SBP2 PE=1 SV=1","S","Function unknown","PREDICTED: selenium-binding protein 2-like [Gossypium raimondii]"]
["c29526.graph_c0","--","--","--","--","--","--","--","Probable WRKY transcription factor 21 OS=Arabidopsis thaliana OX=3702 GN=WRKY21 PE=2 SV=1","--","--","WRKY6 transcription factor [Gossypium hirsutum]"]
["c68412.graph_c0","--","--","Molecular Function: structural constituent of ribosome (GO:0003735);; Molecular Function: transporter activity (GO:0005215);; Cellular Component: mitochondrial inner membrane (GO:0005743);; Biological Process: translation (GO:0006412);; Cellular Component: integral component of membrane (GO:0016021);; Biological Process: transmembrane transport (GO:0055085);; ","K05863|2.18712e-87|cme:CYME_CMN084C|K05863 solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31 | (RefSeq) ADP/ATP translocase","[C]","Energy production and conversion ","Mitochondrial carrier protein","ADP,ATP carrier protein OS=Parachlorella kessleri OX=3074 PE=3 SV=1","U","Intracellular trafficking, secretion, and vesicular transport","ADP/ATP translocase [Cyanidioschyzon merolae strain 10D] "]
["c32861.graph_c0","--","--","--","--","[I]","Lipid transport and metabolism ","Reverse transcriptase-like;; CRAL/TRIO, N-terminal domain","Phosphatidylinositol/phosphatidylcholine transfer protein SFH6 OS=Arabidopsis thaliana OX=3702 GN=SFH6 PE=2 SV=1","S","Function unknown","hypothetical protein B456_009G199800 [Gossypium raimondii]"]
["c42896.graph_c0","[IQ]","Lipid transport and metabolism ;; Secondary metabolites biosynthesis, transport and catabolism ","Biological Process: metabolic process (GO:0008152);; Molecular Function: ligase activity (GO:0016874);; ","--","[I]","Lipid transport and metabolism ","AMP-binding enzyme;; AMP-binding enzyme C-terminal domain;; AMP-binding enzyme","Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana OX=3702 GN=AAE11 PE=1 SV=1","IQ","--","PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Gossypium raimondii] "]
["c47045.graph_c0","--","--","--","--","--","--","Domain of unknown function (DUF4228)","--","S","Function unknown","PREDICTED: uncharacterized protein LOC107933756 [Gossypium hirsutum]"]
["c46290.graph_c0","[T]","Signal transduction mechanisms ","--","--","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase;; Protein kinase domain","CDPK-related kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CRK6 PE=1 SV=1","T","Signal transduction mechanisms","PREDICTED: CDPK-related kinase 4-like isoform X2 [Gossypium raimondii]"]
["c41011.graph_c0","[G]","Carbohydrate transport and metabolism ","Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750);; Cellular Component: cytosol (GO:0005829);; Biological Process: pentose-phosphate shunt, non-oxidative branch (GO:0009052);; Biological Process: pentose catabolic process (GO:0019323);; Biological Process: cellular carbohydrate metabolic process (GO:0044262);; Molecular Function: metal ion binding (GO:0046872);; ","K01783|1.85186e-73|tcc:TCM_017163|K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] | (RefSeq) Aldolase-type TIM barrel family protein","[G]","Carbohydrate transport and metabolism ","Ribulose-phosphate 3 epimerase family","Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0505700 PE=1 SV=1","G","Carbohydrate transport and metabolism","ribulose-phosphate 3-epimerase, cytoplasmic isoform-like [Herrania umbratica]"]
["c35764.graph_c0","--","--","Cellular Component: mitochondrial outer membrane (GO:0005741);; Molecular Function: voltage-gated anion channel activity (GO:0008308);; Biological Process: regulation of anion transmembrane transport (GO:1903959);; ","K15040|6.65144e-95|gra:105764532|K15040 voltage-dependent anion channel protein 2 | (RefSeq) mitochondrial outer membrane protein porin of 36 kDa-like","[P]","Inorganic ion transport and metabolism ","Eukaryotic porin","Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum OX=4113 PE=1 SV=2","U","Intracellular trafficking, secretion, and vesicular transport","hypothetical protein B456_008G182700 [Gossypium raimondii]"]
["c42453.graph_c0","[T]","Signal transduction mechanisms ","Molecular Function: protein serine/threonine kinase activity (GO:0004674);; Molecular Function: ATP binding (GO:0005524);; Biological Process: protein phosphorylation (GO:0006468);; ","K04733|1.53493e-167|gra:105761189|K04733 interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1] | (RefSeq) serine/threonine-protein kinase PBS1-like","[T]","Signal transduction mechanisms ","Protein kinase domain;; Protein tyrosine kinase","Probable serine/threonine-protein kinase PBL23 OS=Arabidopsis thaliana OX=3702 GN=PBL23 PE=2 SV=1","T","Signal transduction mechanisms","PREDICTED: serine/threonine-protein kinase PBS1-like [Gossypium raimondii] "]
["c80752.graph_c0","--","--","--","--","[W]","Extracellular structures ","Secreted protein acidic and rich in cysteine Ca binding region","--","S","Function unknown","--"]

{"sheet":"KOG_Annotation","index":2,"n_rows":26,"n_cols":4,"rows_kept":26,"flags":["formulas_cached_only"]}
["#ID","Class_Name","Numbers","percent"]
["R","General function prediction only",5376,21.87]
["O","Posttranslational modification, protein turnover, chaperones",2755,11.21]
["T","Signal transduction mechanisms",2490,10.13]
["J","Translation, ribosomal structure and biogenesis",1762,7.17]
["G","Carbohydrate transport and metabolism",1455,5.92]
["U","Intracellular trafficking, secretion, and vesicular transport",1324,5.39]
["K","Transcription",1282,5.22]
["Q","Secondary metabolites biosynthesis, transport and catabolism",1272,5.18]
["C","Energy production and conversion",1247,5.07]
["I","Lipid transport and metabolism",1095,4.46]
["E","Amino acid transport and metabolism",1084,4.41]
["S","Function unknown",1043,4.24]
["Z","Cytoskeleton",861,3.5]
["A","RNA processing and modification",778,3.17]
["P","Inorganic ion transport and metabolism",764,3.11]
["D","Cell cycle control, cell division, chromosome partitioning",517,2.1]
["L","Replication, recombination and repair",403,1.64]
["M","Cell wall/membrane/envelope biogenesis",306,1.25]
["B","Chromatin structure and dynamics",284,1.16]
["F","Nucleotide transport and metabolism",253,1.03]
["W","Extracellular structures",227,0.92]
["H","Coenzyme transport and metabolism",224,0.91]
["V","Defense mechanisms",217,0.88]
["Y","Nuclear structure",103,0.42]
["N","Cell motility",18,0.07]

{"sheet":"GO_Annotation","index":3,"n_rows":28812,"n_cols":42,"rows_kept":4500,"cut":true,"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0},"flags":["formulas_cached_only"]}
["geneID","GO"]
["c10.graph_c0","GO:0003993","GO:0016311","GO:0046872"]
["c10.graph_c1","GO:0003993","GO:0016311","GO:0046872"]
["c100.graph_c0","GO:0008152","GO:0016758"]
["c100.graph_c1","GO:0008194","GO:0009813","GO:0016758","GO:0043231","GO:0052696"]
["c10008.graph_c0","GO:0003676","GO:0004386","GO:0005524","GO:0005635","GO:0005737","GO:0005886","GO:0008186","GO:0009408","GO:0009409","GO:0009737","GO:0016973"]
["c10015.graph_c0","GO:0004674","GO:0005524","GO:0006468","GO:0016021","GO:0044763","GO:0065007"]
["c10018.graph_c0","GO:0002237","GO:0006468","GO:0009816","GO:0010204","GO:0019897","GO:0034051"]
["c10029.graph_c0","GO:0009535","GO:0009941","GO:0010287","GO:0016021"]
["c10033.graph_c0","GO:0006511","GO:0008270","GO:0016567"]
["c10033.graph_c1","GO:0003677","GO:0003899","GO:0006351","GO:0008270"]
["c10034.graph_c0","GO:0003993","GO:0016311"]
["c10048.graph_c0","GO:0003735","GO:0006412","GO:0022625"]
["c10068.graph_c0","GO:0005524","GO:0016021","GO:0016887"]
["c10069.graph_c0","GO:0003824","GO:0050662"]
["c10069.graph_c1","GO:0009718","GO:0045552","GO:0050662","GO:0055114"]
["c1007.graph_c0","GO:0003735","GO:0005840","GO:0006412"]
["c10071.graph_c0","GO:0005488","GO:0044238","GO:0071704"]
["c10081.graph_c0","GO:0016020"]
["c10092.graph_c0","GO:0016020"]
["c10095.graph_c0","GO:0000786","GO:0003677","GO:0005634","GO:0016021","GO:0046982"]
["c10095.graph_c1","GO:0000786","GO:0003677","GO:0005634","GO:0046982"]
["c10106.graph_c0","GO:0004828","GO:0005524","GO:0005737","GO:0006434"]
["c10109.graph_c0","GO:0005524","GO:0005978","GO:0008878","GO:0009570","GO:0019252","GO:0030931","GO:0048046","GO:0048573"]
["c10119.graph_c0","GO:0005623","GO:0016491","GO:0044699","GO:0046872"]
["c10119.graph_c1","GO:0003824","GO:0043167"]
["c10124.graph_c0","GO:0016301","GO:0016310"]
["c10129.graph_c0","GO:0010304","GO:0015996","GO:0016021","GO:0034256","GO:0055114"]
["c10135.graph_c0","GO:0003677","GO:0003700","GO:0005634","GO:0006355"]
["c10135.graph_c1","GO:0003677","GO:0003700","GO:0005634","GO:0006355"]
["c10140.graph_c0","GO:0006810","GO:0043227","GO:0043229","GO:0044444"]
["c10141.graph_c1","GO:0004674","GO:0005524","GO:0006468"]
["c10143.graph_c0","GO:0005623","GO:0009055","GO:0015035","GO:0045454","GO:0055114"]
["c10144.graph_c0","GO:0003824","GO:0005773","GO:0008152","GO:0016021"]
["c10144.graph_c1","GO:0003824","GO:0005773","GO:0008152","GO:0016021"]
["c10146.graph_c0","GO:0010091"]
["c10154.graph_c0","GO:0016788"]
["c10154.graph_c1","GO:0016788"]
["c10156.graph_c0","GO:0008270","GO:0016021"]
["c10167.graph_c0","GO:0003723","GO:0003735","GO:0006412","GO:0022625"]
["c10169.graph_c0","GO:0004435","GO:0004871","GO:0005622","GO:0016042","GO:0035556"]
["c10169.graph_c1","GO:0004435","GO:0004871","GO:0005622","GO:0016042","GO:0035556"]
["c10173.graph_c0","GO:0003677","GO:0005634","GO:0006355"]
["c10173.graph_c1","GO:0003677","GO:0005634","GO:0006355"]
["c10174.graph_c0","GO:0004725","GO:0008138","GO:0009555","GO:0035335"]
["c10177.graph_c0","GO:0009737"]
["c10182.graph_c0","GO:0008430"]
["c10183.graph_c0","GO:0016021","GO:0045492"]
["c10186.graph_c0","GO:0005524","GO:0006457","GO:0006950","GO:0051082"]
["c1019.graph_c0","GO:0005764","GO:0006665"]
["c1019.graph_c1","GO:0005764","GO:0006665"]
["c10191.graph_c0","GO:0005774","GO:0006855","GO:0015238","GO:0015297","GO:0016021"]
["c10200.graph_c0","GO:0004640","GO:0006568"]
["c10203.graph_c0","GO:0005516","GO:0006950"]
["c10203.graph_c1","GO:0005516","GO:0006950"]
["c10204.graph_c0","GO:0004497","GO:0005506","GO:0016021","GO:0016705","GO:0020037","GO:0055114"]
["c10207.graph_c0","GO:0005623","GO:0016491","GO:0044699","GO:0046872"]
["c10209.graph_c0","GO:0003677","GO:0003700","GO:0005634","GO:0006355"]
["c10226.graph_c0","GO:0005886"]
["c10228.graph_c0","GO:0005507","GO:0009505","GO:0016491","GO:0055114"]
["c10231.graph_c0","GO:0030036","GO:0044464"]
["c10242.graph_c0","GO:0005215","GO:0006857","GO:0016021"]
["c10249.graph_c0","GO:0003871","GO:0008270","GO:0009086","GO:0032259"]
["c10250.graph_c0","GO:0004721","GO:0006470","GO:0009742","GO:0046872"]
["c10262.graph_c0","GO:0003993","GO:0016311","GO:0046872"]
["c10262.graph_c1","GO:0003993","GO:0016311","GO:0046872"]
["c10264.graph_c0","GO:0005623","GO:0009055","GO:0015035","GO:0016740","GO:0045454","GO:0055114"]
["c10265.graph_c0","GO:0005506","GO:0016021","GO:0016702","GO:0016709","GO:0020037","GO:0044550","GO:0055114"]
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{"sheet":"KEGG_Annotation","index":4,"n_rows":129,"n_cols":5,"rows_kept":129,"flags":["formulas_cached_only"]}
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["Glyoxylate and dicarboxylate 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["Carbon fixation in photosynthetic 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["Thiamine metabolism","ko00730",25,"c20127.graph_c0;c25426.graph_c0;c26385.graph_c0;c2871.graph_c0;c29667.graph_c0;c29845.graph_c0;c30028.graph_c0;c35506.graph_c0;c37832.graph_c0;c40395.graph_c0;c40634.graph_c0;c41593.graph_c0;c43124.graph_c0;c43577.graph_c2;c44686.graph_c0;c47556.graph_c0;c48764.graph_c0;c56042.graph_c0;c57797.graph_c0;c70229.graph_c0;c80993.graph_c0;c8764.graph_c0;c89091.graph_c0;c89418.graph_c0;c90708.graph_c0;","K01662+K03146+K01662+K01662+K00949+K03147+K06928+K03146+K03146+K14153+K00949+K03146+K01662+K00878+K04487+K01662+K01662+K01662+K01662+K03147+K03146+K03146+K03146+K03147+K03147"]
["Riboflavin metabolism","ko00740",10,"c26623.graph_c0;c27625.graph_c0;c32491.graph_c0;c37144.graph_c0;c38905.graph_c0;c39607.graph_c1;c43134.graph_c0;c44684.graph_c0;c45366.graph_c0;c83243.graph_c0;","K14652+K14652+K14652+K18453+K00793+K11752+K00794+K20884+K14652+K00794"]
["Vitamin B6 metabolism","ko00750",27,"c1102.graph_c0;c12242.graph_c0;c12242.graph_c1;c25237.graph_c0;c25237.graph_c1;c25237.graph_c2;c25872.graph_c0;c25872.graph_c1;c30551.graph_c0;c35074.graph_c0;c40061.graph_c0;c43329.graph_c0;c45477.graph_c0;c45738.graph_c0;c45797.graph_c0;c47390.graph_c1;c48671.graph_c0;c51064.graph_c0;c52215.graph_c0;c54764.graph_c0;c55593.graph_c0;c65506.graph_c0;c69724.graph_c0;c73832.graph_c0;c74101.graph_c0;c74254.graph_c0;c8531.graph_c0;","K00275+K01733+K01733+K00831+K00831+K00831+K13248+K13248+K05275+K13248+K13248+K08681+K01733+K00868+K06215+K00275+K06215+K13248+K06215+K00868+K06215+K08681+K13248+K13248+K08681+K06215+K13248"]
["Nicotinate and nicotinamide metabolism","ko00760",28,"c19248.graph_c0;c23133.graph_c0;c24748.graph_c0;c25641.graph_c0;c26075.graph_c0;c27670.graph_c0;c28184.graph_c0;c35960.graph_c0;c36355.graph_c1;c36614.graph_c0;c38554.graph_c0;c39823.graph_c0;c40020.graph_c0;c41416.graph_c0;c42858.graph_c0;c44176.graph_c0;c44865.graph_c0;c45476.graph_c0;c46471.graph_c0;c46594.graph_c0;c46959.graph_c1;c47522.graph_c0;c47870.graph_c0;c48641.graph_c0;c55563.graph_c0;c73069.graph_c0;c75817.graph_c0;c91672.graph_c0;","K03787+K01240+K01240+K00858+K01513+K01240+K06210+K06210+K01081+K03787+K03787+K03787+K01240+K01513+K00858+K00278+K00763+K00767+K18551+K03517+K00858+K01950+K03787+K00858+K01240+K01513+K00323+K06210"]
["Pantothenate and CoA biosynthesis","ko00770",70,"c15891.graph_c0;c16495.graph_c0;c16834.graph_c0;c18487.graph_c0;c19361.graph_c0;c20273.graph_c0;c22175.graph_c0;c23053.graph_c0;c23249.graph_c0;c24621.graph_c0;c26075.graph_c0;c26233.graph_c0;c26481.graph_c0;c26649.graph_c0;c29464.graph_c0;c29464.graph_c1;c30413.graph_c0;c30434.graph_c0;c30434.graph_c1;c30446.graph_c0;c30909.graph_c0;c32757.graph_c1;c3469.graph_c0;c3469.graph_c1;c34987.graph_c0;c35285.graph_c0;c35979.graph_c0;c36082.graph_c0;c36082.graph_c1;c38558.graph_c0;c38974.graph_c0;c38997.graph_c0;c39955.graph_c0;c40865.graph_c0;c4136.graph_c0;c41416.graph_c0;c42558.graph_c0;c42603.graph_c0;c44080.graph_c1;c44970.graph_c0;c45356.graph_c0;c46118.graph_c0;c46669.graph_c1;c48408.graph_c0;c49715.graph_c0;c52238.graph_c0;c53820.graph_c0;c55157.graph_c0;c57106.graph_c0;c72164.graph_c0;c73069.graph_c0;c7575.graph_c0;c81001.graph_c0;c81287.graph_c0;c81488.graph_c0;c83298.graph_c0;c8330.graph_c0;c84716.graph_c0;c85389.graph_c0;c86574.graph_c0;c87282.graph_c0;c8731.graph_c0;c88372.graph_c0;c89.graph_c0;c89274.graph_c0;c90508.graph_c0;c92133.graph_c0;c92834.graph_c0;c94645.graph_c0;c9484.graph_c0;","K01598+K01653+K00606+K00826+K01598+K00207+K09680+K01922+K00826+K01653+K01513+K01687+K01598+K00826+K01653+K01653+K01464+K01598+K01598+K06133+K01652+K00826+K00826+K00826+K00826+K00053+K01918+K00826+K00826+K00606+K00859+K09680+K00826+K01598+K00053+K01513+K00826+K06133+K00826+K01431+K01652+K01687+K01598+K00053+K09680+K01652+K00053+K00207+K01653+K00053+K01513+K00053+K00826+K01652+K09680+K01431+K09680+K00826+K00826+K09680+K01652+K01653+K00826+K01652+K00826+K00053+K01652+K01687+K01922+K00859"]
["Biotin metabolism","ko00780",31,"c14302.graph_c0;c24245.graph_c0;c32590.graph_c0;c33246.graph_c0;c34348.graph_c0;c36507.graph_c0;c41899.graph_c0;c43758.graph_c0;c44962.graph_c0;c46054.graph_c0;c46617.graph_c0;c47527.graph_c0;c47765.graph_c1;c47851.graph_c0;c49182.graph_c0;c49505.graph_c0;c51034.graph_c0;c51120.graph_c0;c52968.graph_c0;c53408.graph_c0;c53532.graph_c0;c5382.graph_c1;c56808.graph_c0;c66030.graph_c0;c68416.graph_c0;c6906.graph_c0;c6906.graph_c1;c80877.graph_c0;c83647.graph_c0;c83839.graph_c0;c84582.graph_c0;","K09458+K00652+K09458+K02372+K09458+K09458+K09458+K01012+K00059+K00208+K19562+K09458+K01942+K02372+K09458+K00652+K00059+K02372+K00652+K19562+K00059+K09458+K09458+K00059+K00208+K00059+K00059+K09458+K00059+K00059+K00059"]
["Lipoic acid metabolism","ko00785",7,"c32559.graph_c0;c42051.graph_c0;c44259.graph_c0;c46702.graph_c0;c47178.graph_c2;c52864.graph_c0;c60751.graph_c0;","K03801+K03644+K03644+K03801+K03801+K03644+K03801"]
["Folate biosynthesis","ko00790",17,"c16826.graph_c0;c26158.graph_c0;c29322.graph_c0;c34534.graph_c0;c37611.graph_c0;c39835.graph_c1;c42469.graph_c0;c42478.graph_c0;c44714.graph_c0;c45468.graph_c1;c46593.graph_c0;c48367.graph_c0;c48748.graph_c0;c51846.graph_c0;c75577.graph_c0;c92165.graph_c0;c92839.graph_c0;","K18482+K13941+K13998+K13950+K18482+K03635+K01113+K13950+K03637+K20457+K01495+K13998+K01930+K01495+K13950+K03635+K03635"]
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["Terpenoid backbone biosynthesis","ko00900",93,"c12269.graph_c0;c15600.graph_c0;c16829.graph_c0;c17716.graph_c0;c18488.graph_c0;c19965.graph_c0;c20127.graph_c0;c21905.graph_c0;c21905.graph_c1;c21905.graph_c2;c26209.graph_c0;c26385.graph_c0;c27317.graph_c0;c27785.graph_c0;c27849.graph_c0;c2871.graph_c0;c29265.graph_c0;c29499.graph_c0;c31196.graph_c0;c32972.graph_c0;c33183.graph_c1;c34701.graph_c0;c35073.graph_c0;c35161.graph_c0;c36239.graph_c0;c36239.graph_c1;c36277.graph_c0;c37101.graph_c1;c38816.graph_c0;c42101.graph_c0;c4232.graph_c0;c42360.graph_c0;c42360.graph_c1;c42437.graph_c0;c42456.graph_c0;c43006.graph_c0;c43124.graph_c0;c43143.graph_c0;c43468.graph_c0;c43495.graph_c0;c43520.graph_c0;c43855.graph_c1;c43893.graph_c0;c44111.graph_c0;c44616.graph_c0;c44869.graph_c0;c45136.graph_c2;c45957.graph_c0;c45972.graph_c2;c46762.graph_c1;c46836.graph_c0;c46914.graph_c0;c46928.graph_c2;c47173.graph_c0;c47556.graph_c0;c47917.graph_c0;c48221.graph_c0;c48292.graph_c0;c48585.graph_c0;c48764.graph_c0;c49381.graph_c0;c50234.graph_c0;c50576.graph_c0;c50966.graph_c0;c51379.graph_c0;c52525.graph_c0;c52872.graph_c0;c54854.graph_c0;c56042.graph_c0;c56853.graph_c0;c57797.graph_c0;c58514.graph_c0;c59781.graph_c0;c62469.graph_c0;c70526.graph_c0;c72866.graph_c0;c75666.graph_c0;c76746.graph_c0;c7766.graph_c0;c81331.graph_c0;c81715.graph_c0;c8218.graph_c0;c8218.graph_c1;c82438.graph_c0;c85566.graph_c0;c85779.graph_c0;c8587.graph_c0;c86175.graph_c0;c87885.graph_c0;c89005.graph_c0;c90666.graph_c0;c90895.graph_c0;c9339.graph_c0;","K06013+K05906+K11778+K15891+K05356+K00869+K01662+K00021+K00021+K00021+K11778+K01662+K00021+K15892+K13789+K01662+K00587+K11778+K00021+K00021+K05954+K00626+K00021+K13789+K14066+K14066+K11778+K00869+K08658+K10960+K10960+K13789+K13789+K00587+K15892+K06013+K01662+K00869+K00787+K11778+K15889+K15892+K03527+K01823+K00787+K00919+K00938+K03526+K01770+K06013+K13789+K00626+K14066+K00021+K01662+K00099+K01597+K05356+K01641+K01662+K00991+K00021+K00787+K13789+K10960+K11778+K00099+K15889+K01662+K05955+K01662+K01641+K01641+K13789+K11778+K01641+K11778+K01641+K13789+K00021+K00626+K13789+K13789+K01641+K00021+K03527+K00787+K03526+K03527+K00626+K03527+K06013+K00626"]
["Monoterpenoid biosynthesis","ko00902",8,"c29535.graph_c0;c33660.graph_c0;c33771.graph_c0;c41099.graph_c0;c42490.graph_c0;c42490.graph_c2;c94158.graph_c0;c9805.graph_c0;","K15095+K15095+K15095+K15095+K15095+K15095+K15095+K15095"]
["Limonene and pinene degradation","ko00903",10,"c27401.graph_c0;c31014.graph_c0;c41331.graph_c0;c42815.graph_c0;c5798.graph_c0;c5839.graph_c0;c72551.graph_c0;c86193.graph_c0;c88132.graph_c0;c94556.graph_c0;","K00128+K00128+K00128+K00128+K00128+K00128+K00128+K00128+K00517+K00128"]
["Diterpenoid biosynthesis","ko00904",57,"c18629.graph_c0;c18985.graph_c0;c19778.graph_c0;c19989.graph_c0;c20101.graph_c0;c23923.graph_c0;c23923.graph_c1;c24778.graph_c0;c25223.graph_c0;c27114.graph_c1;c28481.graph_c0;c28481.graph_c1;c28731.graph_c0;c28731.graph_c1;c30983.graph_c0;c30983.graph_c1;c32502.graph_c0;c34986.graph_c0;c35404.graph_c0;c35556.graph_c1;c35913.graph_c0;c36272.graph_c0;c36822.graph_c0;c37366.graph_c0;c37443.graph_c0;c37838.graph_c0;c38207.graph_c0;c38831.graph_c0;c41552.graph_c0;c41601.graph_c0;c42561.graph_c0;c42938.graph_c0;c42938.graph_c1;c43353.graph_c0;c44800.graph_c0;c45434.graph_c0;c47593.graph_c0;c48811.graph_c0;c49224.graph_c2;c52308.graph_c0;c57419.graph_c0;c57988.graph_c0;c60890.graph_c0;c64260.graph_c0;c68751.graph_c0;c68842.graph_c0;c69242.graph_c0;c70080.graph_c0;c71032.graph_c0;c73489.graph_c0;c74301.graph_c0;c75315.graph_c0;c76389.graph_c0;c7669.graph_c0;c84702.graph_c0;c85622.graph_c0;c990.graph_c0;","K04123+K04124+K04123+K04125+K04122+K04125+K04125+K05282+K17961+K04125+K04123+K04123+K04123+K04123+K17982+K17982+K04125+K04125+K04123+K17982+K04125+K04125+K04125+K17982+K04125+K04125+K04123+K04121+K04125+K04124+K04125+K04120+K04120+K04123+K05282+K04122+K04120+K04123+K17961+K04124+K04120+K04120+K04124+K04125+K04125+K04123+K04125+K04123+K04125+K05282+K05282+K05282+K05282+K04125+K04120+K04125+K04124"]
["Brassinosteroid biosynthesis","ko00905",14,"c27382.graph_c0;c28079.graph_c0;c30360.graph_c0;c32807.graph_c0;c36271.graph_c0;c36840.graph_c0;c45946.graph_c0;c45978.graph_c0;c46423.graph_c0;c46950.graph_c0;c49543.graph_c0;c54161.graph_c0;c55725.graph_c0;c94872.graph_c0;","K12639+K09591+K12639+K15639+K12640+K09588+K12640+K12638+K09587+K15639+K15639+K09587+K09588+K09588"]
["Carotenoid biosynthesis","ko00906",49,"c27220.graph_c0;c30396.graph_c0;c32592.graph_c0;c33290.graph_c0;c34800.graph_c0;c34800.graph_c1;c35899.graph_c0;c36307.graph_c0;c37873.graph_c0;c39749.graph_c0;c41316.graph_c0;c41338.graph_c0;c41839.graph_c0;c42003.graph_c0;c42491.graph_c0;c42587.graph_c0;c43365.graph_c1;c44497.graph_c1;c44693.graph_c0;c45435.graph_c3;c45889.graph_c0;c46501.graph_c0;c46530.graph_c0;c47312.graph_c1;c47885.graph_c0;c48071.graph_c0;c48207.graph_c0;c49382.graph_c0;c49823.graph_c0;c51070.graph_c0;c51670.graph_c0;c53595.graph_c0;c53986.graph_c0;c55014.graph_c0;c57136.graph_c0;c60604.graph_c0;c62425.graph_c0;c66097.graph_c0;c74012.graph_c0;c7422.graph_c0;c77111.graph_c0;c77819.graph_c0;c80597.graph_c0;c81494.graph_c0;c82600.graph_c0;c83323.graph_c0;c85301.graph_c0;c88111.graph_c0;c9455.graph_c0;","K09837+K02291+K09840+K14593+K14595+K14595+K00514+K09840+K15746+K00514+K09840+K09843+K09839+K02293+K17911+K09841+K15746+K02291+K09843+K09843+K15747+K09840+K09840+K06444+K09842+K09835+K09838+K06443+K00514+K09840+K14595+K09840+K09838+K09840+K09842+K09840+K09843+K09840+K02291+K09837+K09840+K09840+K15746+K09840+K09840+K02291+K17912+K02291+K09840"]
["Zeatin biosynthesis","ko00908",35,"c100.graph_c0;c100.graph_c1;c21533.graph_c0;c24156.graph_c0;c24867.graph_c0;c24867.graph_c1;c26108.graph_c0;c27075.graph_c0;c29225.graph_c0;c32222.graph_c0;c37277.graph_c0;c38296.graph_c0;c39207.graph_c0;c39207.graph_c1;c40895.graph_c0;c40964.graph_c0;c41857.graph_c0;c44399.graph_c2;c45212.graph_c0;c46163.graph_c0;c5059.graph_c0;c51477.graph_c0;c51962.graph_c0;c56259.graph_c0;c58050.graph_c0;c58075.graph_c0;c59170.graph_c0;c60119.graph_c0;c6694.graph_c0;c70472.graph_c0;c7133.graph_c0;c72139.graph_c0;c77320.graph_c0;c7993.graph_c0;c91738.graph_c0;","K13495+K13495+K10760+K00279+K00279+K00279+K00279+K10760+K00791+K00279+K10760+K10717+K00279+K00279+K00279+K00279+K10760+K00279+K00791+K00279+K10717+K10760+K13495+K10760+K00279+K10760+K00279+K00279+K00279+K13495+K00279+K10717+K00279+K10760+K00279"]
["Sesquiterpenoid and triterpenoid biosynthesis","ko00909",15,"c17716.graph_c0;c21477.graph_c1;c22416.graph_c0;c22416.graph_c1;c25270.graph_c0;c39541.graph_c0;c41591.graph_c0;c41914.graph_c0;c43475.graph_c0;c45796.graph_c0;c46022.graph_c0;c47158.graph_c0;c53472.graph_c0;c667.graph_c0;c79454.graph_c0;","K15891+K20659+K20659+K20659+K14173+K00511+K00511+K00511+K15813+K15813+K00511+K00801+K20659+K00511+K00511"]
["Nitrogen metabolism","ko00910",111,"c11052.graph_c0;c13423.graph_c0;c13801.graph_c0;c14241.graph_c0;c16074.graph_c0;c16262.graph_c0;c16344.graph_c0;c1675.graph_c0;c17570.graph_c0;c17646.graph_c0;c17925.graph_c0;c17928.graph_c0;c19275.graph_c0;c19275.graph_c1;c19481.graph_c0;c19699.graph_c0;c27251.graph_c0;c27251.graph_c1;c27508.graph_c0;c28275.graph_c0;c28752.graph_c1;c28794.graph_c0;c28794.graph_c1;c28794.graph_c2;c29390.graph_c0;c29892.graph_c0;c29902.graph_c0;c30319.graph_c0;c30638.graph_c0;c30836.graph_c0;c30836.graph_c1;c30973.graph_c0;c30973.graph_c1;c31447.graph_c0;c31784.graph_c0;c31900.graph_c0;c32296.graph_c0;c32452.graph_c0;c32452.graph_c1;c33214.graph_c0;c33576.graph_c0;c33779.graph_c0;c34540.graph_c0;c36045.graph_c0;c36784.graph_c0;c37058.graph_c0;c37170.graph_c1;c37892.graph_c1;c38851.graph_c0;c39587.graph_c0;c39928.graph_c0;c40873.graph_c0;c41170.graph_c0;c41668.graph_c0;c41774.graph_c0;c43314.graph_c0;c45303.graph_c0;c4601.graph_c0;c4601.graph_c1;c46363.graph_c0;c46941.graph_c0;c47138.graph_c0;c47138.graph_c1;c47138.graph_c2;c47575.graph_c0;c49343.graph_c0;c49948.graph_c0;c50919.graph_c0;c52101.graph_c0;c55554.graph_c0;c56151.graph_c0;c572.graph_c0;c57409.graph_c0;c58382.graph_c0;c58669.graph_c0;c59917.graph_c0;c61640.graph_c0;c63446.graph_c0;c65488.graph_c0;c66526.graph_c0;c69784.graph_c0;c72791.graph_c0;c73164.graph_c0;c7317.graph_c0;c74363.graph_c0;c74517.graph_c0;c77883.graph_c0;c78597.graph_c0;c79050.graph_c0;c79841.graph_c0;c81227.graph_c0;c81376.graph_c0;c81837.graph_c0;c82403.graph_c0;c82967.graph_c0;c83489.graph_c0;c84099.graph_c0;c84443.graph_c0;c85464.graph_c0;c85794.graph_c0;c86147.graph_c0;c86647.graph_c0;c86665.graph_c0;c86742.graph_c0;c88560.graph_c0;c88781.graph_c0;c89025.graph_c0;c92559.graph_c0;c93434.graph_c0;c93655.graph_c0;c94151.graph_c0;","K00284+K01674+K00284+K01674+K01915+K01673+K01674+K01915+K01674+K01915+K01674+K00262+K10534+K10534+K01501+K10534+K00261+K00261+K00264+K01915+K01915+K01915+K01915+K01915+K00261+K01673+K00264+K10534+K01674+K02575+K02575+K00264+K00264+K01674+K01915+K01915+K00264+K01673+K01673+K01674+K01915+K01915+K01915+K01915+K01674+K01915+K02575+K00261+K02575+K01915+K01673+K01673+K01915+K02575+K00366+K10534+K01915+K00261+K00261+K01915+K01673+K00261+K00261+K00261+K01673+K00262+K00264+K01915+K01673+K00261+K10534+K01915+K10534+K10534+K00366+K10534+K01915+K01915+K01673+K10534+K00261+K01674+K10534+K00261+K01915+K00261+K00284+K01915+K10534+K00264+K00284+K00284+K01915+K01673+K01915+K01673+K00284+K01673+K01674+K00264+K01501+K01915+K00284+K00284+K00261+K00284+K01915+K00264+K01674+K00264+K00264"]
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["Phenylpropanoid 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["Flavonoid biosynthesis","ko00941",71,"c10069.graph_c0;c10069.graph_c1;c1361.graph_c0;c15103.graph_c0;c1726.graph_c0;c18653.graph_c0;c20918.graph_c0;c21668.graph_c0;c25902.graph_c0;c27781.graph_c0;c28080.graph_c0;c28251.graph_c0;c29003.graph_c0;c32140.graph_c0;c32155.graph_c0;c32701.graph_c0;c32959.graph_c0;c33099.graph_c0;c33932.graph_c1;c34578.graph_c0;c34578.graph_c1;c34616.graph_c0;c39065.graph_c0;c40317.graph_c0;c40429.graph_c0;c40667.graph_c0;c41100.graph_c0;c41826.graph_c0;c42355.graph_c0;c44615.graph_c0;c4508.graph_c0;c45275.graph_c1;c4569.graph_c0;c46075.graph_c0;c46481.graph_c0;c46636.graph_c0;c46758.graph_c2;c47438.graph_c0;c47860.graph_c0;c48294.graph_c0;c50811.graph_c0;c50905.graph_c0;c51238.graph_c0;c52046.graph_c0;c52184.graph_c0;c534.graph_c0;c55302.graph_c0;c59674.graph_c0;c62311.graph_c0;c62542.graph_c0;c63123.graph_c0;c63207.graph_c0;c6372.graph_c0;c64654.graph_c0;c7242.graph_c0;c73594.graph_c0;c74622.graph_c0;c76287.graph_c0;c76448.graph_c0;c77504.graph_c0;c79088.graph_c0;c7919.graph_c0;c81029.graph_c0;c81925.graph_c0;c82379.graph_c0;c83.graph_c0;c84964.graph_c0;c88149.graph_c0;c88500.graph_c0;c92960.graph_c0;c95141.graph_c0;","K13082+K13082+K05280+K13065+K13065+K08695+K00660+K01859+K00588+K13081+K01859+K00475+K05278+K00660+K00588+K09754+K13065+K00588+K13065+K08695+K08695+K13083+K13081+K00660+K13065+K13082+K05277+K00475+K00660+K08695+K00660+K05280+K05278+K00660+K13065+K05278+K01859+K00588+K00487+K13065+K05278+K00660+K00487+K00487+K00660+K00475+K00475+K13081+K00487+K13065+K13065+K13065+K13065+K13083+K13083+K05277+K13065+K05280+K00487+K13065+K05277+K05280+K13065+K13065+K00487+K00588+K13081+K13065+K13081+K13065+K01859"]
["Anthocyanin biosynthesis","ko00942",1,"c4702.graph_c1;","K12930"]
["Flavone and flavonol biosynthesis","ko00944",7,"c1361.graph_c0;c34616.graph_c0;c45275.graph_c1;c64654.graph_c0;c7242.graph_c0;c76287.graph_c0;c7919.graph_c0;","K05280+K13083+K05280+K13083+K13083+K05280+K05280"]
["Stilbenoid, diarylheptanoid and gingerol biosynthesis","ko00945",30,"c15103.graph_c0;c1726.graph_c0;c25902.graph_c0;c32155.graph_c0;c32701.graph_c0;c32959.graph_c0;c33099.graph_c0;c33932.graph_c1;c40429.graph_c0;c46481.graph_c0;c47438.graph_c0;c47860.graph_c0;c48294.graph_c0;c51238.graph_c0;c52046.graph_c0;c62311.graph_c0;c62542.graph_c0;c63123.graph_c0;c63207.graph_c0;c6372.graph_c0;c74622.graph_c0;c76448.graph_c0;c77504.graph_c0;c81029.graph_c0;c81925.graph_c0;c82379.graph_c0;c83.graph_c0;c88132.graph_c0;c88149.graph_c0;c92960.graph_c0;","K13065+K13065+K00588+K00588+K09754+K13065+K00588+K13065+K13065+K13065+K00588+K00487+K13065+K00487+K00487+K00487+K13065+K13065+K13065+K13065+K13065+K00487+K13065+K13065+K13065+K00487+K00588+K00517+K13065+K13065"]
["Isoquinoline alkaloid biosynthesis","ko00950",50,"c11801.graph_c0;c14070.graph_c0;c18092.graph_c0;c23471.graph_c0;c23801.graph_c0;c24845.graph_c0;c26964.graph_c0;c27447.graph_c0;c27891.graph_c0;c28277.graph_c0;c30065.graph_c0;c34102.graph_c0;c34102.graph_c1;c34102.graph_c3;c34621.graph_c0;c36145.graph_c0;c37828.graph_c0;c38479.graph_c0;c38479.graph_c1;c39987.graph_c0;c40973.graph_c0;c41434.graph_c0;c43065.graph_c0;c43818.graph_c0;c45413.graph_c0;c45429.graph_c1;c45955.graph_c0;c45966.graph_c0;c47018.graph_c3;c50736.graph_c0;c51571.graph_c0;c52659.graph_c0;c53502.graph_c0;c57190.graph_c0;c59638.graph_c0;c61172.graph_c0;c61978.graph_c0;c72584.graph_c0;c74071.graph_c0;c76189.graph_c0;c81839.graph_c0;c84717.graph_c0;c86984.graph_c0;c87804.graph_c0;c89867.graph_c0;c9035.graph_c0;c90397.graph_c0;c92428.graph_c0;c92544.graph_c0;c93959.graph_c0;","K00422+K00276+K00815+K01592+K14454+K01592+K15849+K14454+K14455+K00276+K00815+K00276+K00276+K00276+K14455+K15849+K00815+K00815+K00815+K14454+K01592+K00276+K00276+K00422+K14454+K01592+K00276+K00811+K00815+K00276+K00422+K00422+K00276+K00815+K01592+K01592+K01592+K14455+K14455+K01592+K00422+K14454+K00815+K00422+K14454+K01592+K00276+K14455+K14455+K15849"]
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["Nucleotide excision repair","ko03420",83,"c11166.graph_c0;c11659.graph_c0;c15053.graph_c0;c17029.graph_c1;c18608.graph_c0;c22820.graph_c0;c28296.graph_c0;c29116.graph_c1;c29447.graph_c0;c29447.graph_c1;c2974.graph_c0;c30195.graph_c0;c30255.graph_c0;c30408.graph_c0;c32555.graph_c0;c34128.graph_c0;c34128.graph_c1;c34524.graph_c0;c35614.graph_c0;c35652.graph_c1;c35652.graph_c2;c35918.graph_c0;c36099.graph_c0;c36371.graph_c1;c37162.graph_c0;c37508.graph_c0;c37508.graph_c1;c38091.graph_c0;c38133.graph_c0;c38686.graph_c0;c40351.graph_c0;c40356.graph_c0;c40421.graph_c0;c40598.graph_c1;c40656.graph_c1;c40808.graph_c0;c40827.graph_c0;c41205.graph_c0;c41452.graph_c0;c41602.graph_c0;c43060.graph_c0;c43869.graph_c0;c43912.graph_c0;c44007.graph_c0;c44932.graph_c0;c46036.graph_c1;c46256.graph_c0;c46464.graph_c0;c46534.graph_c1;c46766.graph_c0;c46936.graph_c0;c47119.graph_c0;c47484.graph_c0;c47531.graph_c0;c47642.graph_c1;c47769.graph_c0;c48090.graph_c0;c48119.graph_c1;c49085.graph_c3;c49284.graph_c0;c49373.graph_c0;c49601.graph_c0;c49729.graph_c0;c50064.graph_c0;c50872.graph_c0;c52521.graph_c0;c53234.graph_c0;c54329.graph_c0;c58274.graph_c0;c6206.graph_c0;c67763.graph_c0;c70045.graph_c0;c75576.graph_c0;c80951.graph_c0;c8159.graph_c0;c82328.graph_c0;c8636.graph_c0;c92364.graph_c0;c93258.graph_c0;c93407.graph_c0;c94168.graph_c0;c94572.graph_c0;c94885.graph_c0;","K02202+K07466+K03868+K02328+K04802+K10610+K03505+K03505+K03505+K03505+K03504+K02324+K10739+K07466+K10756+K02335+K02335+K10740+K10609+K10739+K10739+K10848+K10845+K10849+K10609+K10839+K10839+K10609+K10838+K10610+K07466+K10747+K10570+K03868+K02202+K10609+K10610+K07466+K10140+K10747+K10756+K03142+K10842+K10755+K10843+K10756+K07466+K10846+K02335+K10839+K03504+K10839+K03143+K03141+K07466+K07466+K03144+K10754+K04802+K10841+K02327+K10610+K10609+K03505+K04802+K10839+K10609+K10609+K10849+K10756+K10756+K10840+K10756+K07466+K02202+K10610+K02326+K03868+K10754+K10747+K10839+K10610+K10756"]
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