Knead filtered metagenomic data for 21 samples was annotated with Kraken 2.0.8 at CSC – IT Center for Science, Finland. In this report we used four different databases:
A) Microb (NCBI RefSeq bacterial, archea, viral, fungi and protozoa)
B) PlusPF database
C) NCBI fungi (all NCBI fungal sequences)
D) Selected NCBI fungi (all NCBI sequences for fungal species found with ITS)
For sample S1231 Kraken2 was unable to classify any reads with database D.
This file was generated with the Pavian R package version 1.2.0 on Wed Jul 5 15:19:36 2023. Please cite Pavian if you use it in your research.