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["Table S3 RNA-Seq statistics"]
["Sample name","Sample symbol","Total reads","Clean reads","Mapped reads","Mapping rate (%)","Unique match","Multi-position match"]
["Root, Control, 6h, CSR28, Replication 1","R-CT-6h-CSR28-R1",28412192,27627446,21260205,77,20238443,1021762]
["Root, Control, 6h, CSR28, Replication 2","R-CT-6h-CSR28-R2",56063318,55307832,45296642,81.9,43127272,2169370]
["Root, Control, 6h, CSR28, Replication 3","R-CT-6h-CSR28-R3",23866883,23753784,19556299,82.3,18730904,825395]
["Root, Control, 6h, IR28, Replication 1","R-CT-6h-IR28-R1",30180992,29963687,25075406,83.7,23931258,1144148]
["Root, Control, 6h, IR28, Replication 2","R-CT-6h-IR28-R2",24598966,24300764,19894951,81.9,18984056,910895]
["Root, Control, 6h, IR28, Replication 3","R-CT-6h-IR28-R3",21599466,21410453,17650143,82.4,16831837,818306]
["Root, Control, 54h, CSR28, Replication 1","R-CT-54h-CSR28-R1",21854841,21712393,17961969,82.7,17236045,725924]
["Root, Control, 54h, CSR28, Replication 2","R-CT-54h-CSR28-R2",34668985,34227091,27332029,79.9,26016363,1315666]
["Root, Control, 54h, CSR28, Replication 3","R-CT-54h-CSR28-R3",23158946,23023138,19154227,83.2,18311220,843007]
["Root, Control, 54h, IR28, Replication 1","R-CT-54h-IR28-R1",23685242,23537218,18861858,80.1,18039474,822384]
["Root, Control, 54h, IR28, Replication 2","R-CT-54h-IR28-R2",14689999,14547899,11362523,78.1,10755787,606736]
["Root, Control, 54h, IR28, Replication 3","R-CT-54h-IR28-R3",17522548,17316906,13943742,80.5,13349364,594378]
["Root, Salinity stress, 6h, CSR28, Replication 1","R-SS-6h-CSR28-R1",18705225,18144941,15316760,84.4,14619455,697305]
["Root, Salinity stress, 6h, CSR28, Replication 2","R-SS-6h-CSR28-R2",18644934,18524042,15879118,85.7,14729126,1149992]
["Root, Salinity stress, 6h, CSR28, Replication 3","R-SS-6h-CSR28-R3",21033126,21033126,17329504,82.4,16678310,651194]
["Root, Salinity stress, 6h, IR28, Replication 1","R-SS-6h-IR28-R1",13519864,13377066,11166072,83.5,10688180,477892]
["Root, Salinity stress, 6h, IR28, Replication 2","R-SS-6h-IR28-R2",14244688,13901445,11394739,82,10926687,468052]
["Root, Salinity stress, 6h, IR28, Replication 3","R-SS-6h-IR28-R3",19286526,18996592,16207702,85.3,15502382,705320]
["Root, Salinity stress, 54h, CSR28, Replication 1","R-SS-54h-CSR28-R1",20434445,20048547,15961972,79.6,15634752,327220]
["Root, Salinity stress, 54h, CSR28, Replication 2","R-SS-54h-CSR28-R2",20477415,20340454,15372572,75.6,15009922,362650]
["Root, Salinity stress, 54h, CSR28, Replication 3","R-SS-54h-CSR28-R3",17185212,16121703,12233594,75.9,11698595,534999]
["Root, Salinity stress, 54h, IR28, Replication 1","R-SS-54h-IR28-R1",17645135,17468811,14191069,81.2,13486087,704982]
["Root, Salinity stress, 54h, IR28, Replication 2","R-SS-54h-IR28-R2",22277005,22126618,17906270,80.9,17080026,826244]
["Root, Salinity stress, 54h, IR28, Replication 3","R-SS-54h-IR28-R3",20576103,20438794,16080333,78.7,15358517,721816]
["Shoot, Control, 6h, CSR28, Replication 1","S-CT-6h-CSR28-R1",21643764,21393227,19028878,88.9,18099589,929289]
["Shoot, Control, 6h, CSR28, Replication 2","S-CT-6h-CSR28-R2",22682675,22542248,20053488,89,19091259,962229]
["Shoot, Control, 6h, CSR28, Replication 3","S-CT-6h-CSR28-R3",22092266,21907538,19536139,89.2,18621357,914782]
["Shoot, Control, 6h, IR28, Replication 1","S-CT-6h-IR28-R1",33130353,32850719,29123736,88.7,27780125,1343611]
["Shoot, Control, 6h, IR28, Replication 2","S-CT-6h-IR28-R2",26295335,26119432,23255308,89,22102517,1152791]
["Shoot, Control, 6h, IR28, Replication 3","S-CT-6h-IR28-R3",44864600,44606479,39741019,89.1,37987969,1753050]
["Shoot, Control, 54h, CSR28, Replication 1","S-CT-54h-CSR28-R1",29743511,29194998,25317769,86.7,23843696,1474073]
["Shoot, Control, 54h, CSR28, Replication 2","S-CT-54h-CSR28-R2",36623463,22542248,20053488,89,19091259,962229]
["Shoot, Control, 54h, CSR28, Replication 3","S-CT-54h-CSR28-R3",24742316,24529594,21654430,88.3,21287934,366496]
["Shoot, Control, 54h, IR28, Replication 1","S-CT-54h-IR28-R1",26174903,25857868,20935784,81,19974848,960936]
["Shoot, Control, 54h, IR28, Replication 2","S-CT-54h-IR28-R2",37719789,37521866,32803976,87.4,31237637,1566339]
["Shoot, Control, 54h, IR28, Replication 3","S-CT-54h-IR28-R3",19457711,19324484,16990978,87.9,16260773,730205]
["Shoot, Salinity stress, 6h, CSR28, Replication 1","S-SS-6h-CSR28-R1",39275028,38964965,34502909,88.5,33020279,1482630]
["Shoot, Salinity stress, 6h, CSR28, Replication 2","S-SS-6h-CSR28-R2",41301189,40610811,36038351,88.7,34356144,1682207]
["Shoot, Salinity stress, 6h, CSR28, Replication 3","S-SS-6h-CSR28-R3",26679424,26551595,23430099,88.2,22414078,1016021]
["Shoot, Salinity stress, 6h, IR28, Replication 1","S-SS-6h-IR28-R1",22931298,22763678,20124569,88.4,19126721,997848]
["Shoot, Salinity stress, 6h, IR28, Replication 2","S-SS-6h-IR28-R2",27375960,27181606,24157172,88.9,23086365,1070807]
["Shoot, Salinity stress, 6h, IR28, Replication 3","S-SS-6h-IR28-R3",21381394,21153832,18766502,88.7,18056433,710069]
["Shoot, Salinity stress, 54h, CSR28, Replication 1","S-SS-54h-CSR28-R1",20786684,20558805,18037364,87.7,17245955,791409]
["Shoot, Salinity stress, 54h, CSR28, Replication 2","S-SS-54h-CSR28-R2",41011774,40585655,35543493,87.6,34007896,1535597]
["Shoot, Salinity stress, 54h, CSR28, Replication 3","S-SS-54h-CSR28-R3",18930856,18753323,16422221,87.6,15631457,790764]
["Shoot, Salinity stress, 54h, IR28, Replication 1","S-SS-54h-IR28-R1",23800654,23502134,20664801,87.9,19785972,878829]
["Shoot, Salinity stress, 54h, IR28, Replication 2","S-SS-54h-IR28-R2",24870272,24612376,21667639,88,20532921,1134718]
["Shoot, Salinity stress, 54h, IR28, Replication 3","S-SS-54h-IR28-R3",33382921,33182593,29217319,88.1,27899339,1317980]
["Total",null,1231230196,1204062824,1023457131,"84.9 % (Average)",977506585,"45950546 (4.7 %, Average)"]