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["Author","n (strains)","publication title","journal","publication URL","strains"]
["Katzelnick et al",78,"Antigenic evolution of dengue viruses over multiple decades","Unpublished","unknown","04390/99,02739/97,D85_052,02838/93,00630/11,00794/94,04058/99,03541/99,02098/00,01382/06,02821/99,03531/01,00558/05,02192/06,02377/03,M30153_AC36,42A,BR_2,TONGA_74,POONA_742295,DENV2/PAPUANEWGUINEA/1944/NEWGUINEAC,00084/97,01431/96,03412/97,01429/94,01940/96,02119/96,00777/95,02206/97,01865/96,07718/97,06902/98,01549/03,01644/06,05894/00,00334/12,05470/88,SLEMAN_1280_AC25,00128/94,01398/08,01508/10,30110/95,01042/95,04710/97,05956/99,05815/00,01868/98,01387/05,01487/96,00317/03,00631/95,06406/97,01720/96,05456/00,04514/99,00495/97,05379/99,02384/06,01401/13,00493/83,00633/80,IQT_6152,00437/82,30031/94,00522/88,00168/94,00970/96,30179/95,01134/96,04350/99,00377/97,05131/97,01849/03,00494/01,03916/01,00878/04,04850/00,06705/98"]
["Jayashri et al",16,"Evolutionary Dynamics of Dengue Virus in India","Unpublished","unknown","DENV_4/IND/624000/1962,DENV_4/IND/793679/1979,DENV_2/IND/P23085/1960,DENV_2/IND/715394/1971,DENV_2/IND/803347/1980,DENV_2/IND/053598/2005,DENV_2/IND/969201/1996,DENV_3/USA/633798/1963,DENV_3/IND/664481/1966,DENV_3/IND/58760/2005,DENV_3/IND/59826/2005,DENV_1/IND/715393/1971,DENV_1/IND/826883/1982,DENV_1/IND/55290/2005,DENV_1/IND/631288/1963,DENV_1/THAI/606147/1960"]
["Rossi et al",2,"Genetic and phenotypic characterization of sylvatic dengue virus type 4 strains","Virology (2011) In press","https://www.ncbi.nlm.nih.gov/pubmed/22178263","INDIA_G11337,INH6412"]
["Wu et al A",14,"Molecular epidemiology of dengue viruses in southern China from 1978 to 2006","Virol. J. 8 (1), 322 (2011)","https://www.ncbi.nlm.nih.gov/pubmed/21703015","GD09/90,GD07/78,GD01/01,GD01/03,GD06/93,GD08/98,GD54/03,GD66/03,GD03/91,GD95/95,GD99/99,GD01/97,GD01/06,GD02/06"]
["Stica et al",17,"Global evolutionary history and dynamics of dengue viruses inferred from whole genome sequences","Unpublished","unknown","B79233_25301,Dengue_4_S_40946_Burma_1976,1674/90_DEN4,Dengue_4_S_49489_Niue_1980,Dengue_4_S_49383_Gilbert_Islands_1980,Dengue_2_S_5279_Samoa1972,8546/93_DEN2,Dengue_2_239127_Palau_1988,Dengue_2_S_40921_Burma_1976,DEN_3_D90_1002_3/00,DENV_2_Jamaica_B78779,Dengue_3_S_40544_Burma_1973,Dengue_3_S_40580_Burma_1976,D88_453_DEN_3_3/00,PAK4_25702,Dengue_1_S_30150_Fiji_1975,8196/92_DEN1"]
["Henn et al A",21,"Direct Submission","Submitted (03-SEP-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/PH/BID_V3361/1956,DENV_4/VE/BID_V1154/2007,DENV_2/PR/BID_V3367/1969,DENV_2/MX/BID_V3356/1992,DENV_2/VE/BID_V3366/1987,DENV_2/MX/BID_V3354/1983,DENV_2/MX/BID_V3355/1983,DENV_2/TH/BID_V3357/1964,DENV_2/VE/BID_V3496/1990,DENV_2/VE/BID_V3363/1991,DENV_2/VE/BID_V3365/1991,DENV_2/VE/BID_V3364/1991,DENV_2/VE/BID_V3362/1991,DENV_2/VE/BID_V3497/1991,DENV_2/CO/BID_V3369/1999,DENV_3/CO/BID_V3395/2003,DENV_1/VG/BID_V2937/1985,DENV_1/MX/BID_V3689/2007,DENV_1/MX/BID_V3752/2008,DENV_1/MX/BID_V3731/2007,DENV_1/CO/BID_V3378/1999"]
["Anez et al",2,"Complete Genome Sequences of Dengue Virus Type 1 to 4 Strains Used for the Development of CBER/FDA RNA Reference Reagents and WHO International Standard Candidates for Nucleic Acid Testing","Genome Announc 4 (1), e01583-15 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/26868382","H241,Hawaii"]
["Tamura et al",11,"Generation and characterization of genetically and antigenically diverse infectious clones of dengue virus serotypes 1-4","Emerg Microbes Infect (2021) In press","https://www.ncbi.nlm.nih.gov/pubmed/34931940","DENV4_3_DAK_H_38550,DENV4_1_1229,DENV4_2_BE_H_403714,DENV2_4_PH_H023_88,DENV2_2_INS_378816,DENV2_5_SP194589,DENV3_2_JKT_85_934,DENV3_5_S_162,DENV1_5_RIO_H_36589,DENV1_2_BE_H_584526,DENV1_1_AUS_H_T1_9"]
["Shrivastava et al",1,"Co-circulation of all the four dengue virus serotypes and detection of a novel clade of DENV-4 (genotype I) virus in Pune, India during 2016 season","PLoS ONE 13 (2), e0192672 (2018)","https://www.ncbi.nlm.nih.gov/pubmed/29470509","D4/IND/PUNE/IRSHA_FG_02_S_41_"]
["?",136,"unknown","unknown","unknown","S20,N580,02207/03,00095/94,00027/99,21XN04403_D4_MYS,21XN04403,GZ8H/2019125/2019/IV,GZ8H/2019122/2019/IV,GZ8H/2019126/2019/IV,GZ8H/2019124/2019/IV,GZ8H/2019129/2019/IV,GZ8H/2019131/2019/IV,DENV_2/ID/1183DN/1977,DENV_2/CO/BID_V3358/1986,MCL_21_H_11381,S121,V52513,DENV_2/LK/BID_V2421/2003,S144,D25004,MCVR2188AB/2016,KAJP25_DENV2_Djibouti_EasternAfrica_2007,RUJul,D23024,DENV_2/ID/1016DN/1975,DSG2020_345,V310411,DENV_2/ID/1046DN/1976,GZ8H/2019132/2010/II,NCD049,DAR026,NCD043,GO_BC12_2021,FPJ01508/JUN_PER/2021,GZ8H/2019012/2018/II,2022GZ01726_LKA,SG_EHI_D2/52797Y15,V109000320190724,DENV_2/ID/1022DN/1975,55765_DENV_2,00024/96,00295/98,01314/02,00016/14,DENV_2/VI/BID_V2946/1987,DENV_2/PR/28DN/1994,DENV_2/PR/33DN/1994,DENV_2/BR/BID_V2385/2003,NS11331,NS6312,NS8010,NS7453,NS7465,NS7227,NS6587,155denv2_BR_Rj,FPG00557_2/AMA_PER/2021,D2/NI/1991_1e/2015,D2/NI/1949_1E/2015,D2/NI/5262_12B1/2016,D2/NI/8971_12A1/2016,D2/NI/1744_1E/2014,V594,US/DB278/2020,29472_L11422_I,DENV_3/TH/BID_V3360/1973,DENV_3_89/273_3/00,00255/94,DENV_3/LK/BID_V2409/1997,DEL_72,S14,19XN11050_D3_MDV,19XN50516_D3_CHN_s,DENV_3/CO/BID_V3402/2005,DENV_3/CO/BID_V3393/2002,DENV_3/CO/BID_V3403/2005,D3/NI/1685_IE/2013,INMI1/DRC_2019,01738/80,03228/80,D25005,FT_MD_120_R4_DENV1D_III_India,D22003,D21009,ICIDR83,F_097,19XN50687_D1,RNA48742,NS9136,D1/NI/1597_1E/2013,NS6378,D1/NI/1592_1E/2013,DENV_1/CO/BID_V3377/1998,DENV_1/CO/BID_V3376/1998,FPG00707/AMA_PER/2021,NS11424,GO03,OPAS169,RNA43538,RNA48458,RNA48678,V644,V49369,V48994,NS11344,V49012,NS10979,RNA46251,RNA46485,RDENV1_WP_1A,00637/95,00098/91,00769/95,00740/94,01447/94,05574/00,21XN16257,19XN14467_D1_KHM,RR031_050a_31001_reads_nh,V100061020190701,NC_2012_10_25/298186,00380/99,01813/02,00431/02,01764/04,00577/11,01450/11,KDC0394A_09/27/2010,00995/95,02776/06,00896/11,00554/11,VI/Italy/2020,YCH_D1_31_19consensus,V109031620200713"]
["Sabeena et al",1,"Whole genome sequencing of Dengue virus serotypes from India","Unpublished","unknown","MCVR4454AC/2017"]
["Maurya et al",1,"Direct Submission","Submitted (21-JUN-2022) Infection and Immunology, Translational Health Science and Technology Institute, Faridabad-Gurugram Highway, Faridabad, Haryana 121001, India","unknown","D2201310101"]
["Yadav et al A",6,"Direct Submission","Submitted (10-FEB-2022) Maximum Containment Laboratory, National Institute of Virology, Pashan, Pune, Maharashtra 411021, India","unknown","MCL_21_H_11374_8497,MCL_21_H_11373_8496,MCL_21_H_11361,MCL_21_H_11427,MCL_21_H_11017,MCL_21_H_10600"]
["Koo et al A",13,"Evolution and heterogeneity of multiple serotypes of Dengue virus in Pakistan, 2006-2011","Virol. J. 10, 275 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/24007412","D4/Pakistan/150/2009,D2/Pakistan/51/2008,D2/Pakistan/2011_3/2011,D2/Pakistan/78/2009,D2/Pakistan/209/2009,D2/Pakistan/2011_4/2011,D2/Pakistan/2011_23/2011,D3/Pakistan/55709/2006,D3/Pakistan/43298/2006,D3/Pakistan/55505/2007,D3/Pakistan/52440/2006,D3/Pakistan/45251/2009,D3/Pakistan/56/2008"]
["Shihada et al A",7,"Genetic Diversity and New Lineages of Dengue Virus Serotypes 3 and 4 in Returning Travelers, Germany, 2006-2015","Emerging Infect. Dis. (2017) In press","unknown","DENV4_3274,DENV4_61120,DENV2_2627,DENV3_3404,DENV3_9468,DENV3_3140,DENV3_2994"]
["Vaddadi et al A",1,"Molecular characterization of dengue virus serotypes in South India","Unpublished","unknown","UOH_23916"]
["Uehara et al",12,"Analysis of Dengue Serotype 4 in Sri Lanka During the 2012-2013 Dengue Epidemic","Unpublished","unknown","SL747_C_SriLanka_2013142,SL595_C_SriLanka_2012603,SL684_C_SriLanka_2013041,SL2390_G_SriLanka_2012753,SL723_C_SriLanka_2013101,SL768_C_SriLanka_2013211,SL2428_G_SriLanka_2012764,SL2320_G_SriLanka_2012679,SL2590_G_SriLanka_2012921,SL2136_G_SriLanka_2012567,SL560_C_SriLanka_2012773,SL2222_G_SriLanka_2012627"]
["Klungthong et al",3,"The molecular epidemiology of dengue virus serotype 4 in Bangkok, Thailand","Virology 329 (1), 168-179 (2004)","https://www.ncbi.nlm.nih.gov/pubmed/15476884","ThD4_0087_77,ThD4_0348_91,ThD4_0734_00"]
["Quyen et al",1,"Dengue virus 4 virus culture","Unpublished","unknown","DENV4_002"]
["Salje et al",33,"Dengue diversity across spatial and temporal scales: local structure and the impact of host population size","Unpublished","unknown","Ser4_Thailand_Bangkok_Seq4,Ser4_Thailand_Bangkok_Seq73,Ser4_Thailand_Bangkok_Seq63,Ser4_Thailand_Bangkok_Seq49,Ser4_Thailand_nonBKK_Seq26,Ser2_Thailand_Bangkok_Seq85,Ser2_Thailand_Bangkok_Seq99,Ser2_Thailand_Bangkok_Seq75,Ser2_Thailand_Bangkok_Seq74,Ser2_Thailand_Bangkok_Seq56,Ser2_Thailand_Bangkok_Seq52,Ser2_Thailand_Bangkok_Seq13,Ser2_Thailand_Bangkok_Seq28,Ser2_Thailand_nonBKK_Seq43,Ser2_Thailand_Bangkok_Seq51,Ser2_Thailand_nonBKK_Seq23,Ser2_Thailand_Bangkok_Seq23,Ser3_Thailand_nonBKK_Seq29,Ser3_Thailand_nonBKK_Seq33,Ser3_Thailand_Bangkok_Seq74,Ser3_Thailand_Bangkok_Seq53,Ser3_Thailand_Bangkok_Seq28,Ser3_Thailand_Bangkok_Seq46,Ser3_Thailand_Bangkok_Seq37,Ser3_Thailand_nonBKK_Seq40,Ser1_Thailand_nonBKKSeq_43,Ser1_Thailand_BangkokSeq_184,Ser1_Thailand_BangkokSeq_143,Ser1_Thailand_BangkokSeq_82,Ser1_Thailand_nonBKKSeq_28,Ser1_Thailand_BangkokSeq_126,Ser1_Thailand_BangkokSeq_102,Ser1_Thailand_BangkokSeq_51"]
["Phadungsombat et al",3,"Emergence of genotype Cosmopolitan of dengue virus type 2 and genotype III of dengue virus type 3 in Thailand","PLoS ONE (2018) In press","unknown","Th16_020DV4,Th16_056DV2,Th16_055DV3"]
["Mo et al",1,"complete genome sequence and evolutionary analysis of an import dengue virus serotype 4 from Thailand","Unpublished","unknown","2013JH285"]
["Soe et al",8,"Emergence of a Novel Dengue Virus 3 (DENV-3) Genotype-I Coincident with Increased DENV-3 Cases in Yangon, Myanmar between 2017 and 2019","Viruses 13 (6), 1152 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/34208667","YCH_D4_3_18consensus,YCH_D4_5_18consensus,YGH_D2_2_18consensus,YCH_61_18consensus,YCH_D3_17_18consensus,YCH_330_17consensus,YCH_D1_4_18consensus,YGH_D1_17_18_consensus"]
["Bai et al A",1,"Complete genome sequence of dengue virus serotype 4 from guangzhou, china","Genome Announc 1 (3), E00299-13 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/23723400","GZ/9809/2012"]
["Jiang et al A",5,"The genetic characteristics and diversity of dengue virus during outbreak of dengue in Guangzhou, China, 2010- 2020","Unpublished","unknown","20XN34963_D4_Malaysia,20XN94134_D2_FULL,20XN37683_D2,20XN39552_D3_Myanmar,20XN35991_D1"]
["Aubry et al A",31,"Epidemiology and genetic evolution of Dengue viruses in the South Pacific island countries","Unpublished","unknown","PF10/150610_28,NC09/020409_9266,NC09/230909_14518,NC09/170309_6652,PF09/290109_69,PF09/230309_126,NC08/200208_409,WF89/140889_4838,NC89/060289_283,PF91/090891_22130,PF93/200493_110185,PF95/190795_20064,WF95/050495_1650,PF96/040996_24881,PF96/150296_46183,NC95/170895_3750,NC95/240295_418,NC95/271295_4197,NC96/181196_4690,WF95/090595_2448,NC96/211096_4631,NC04/030704_1994,NC02/030602_585,PF08/070308_138,PF08/180908_01,PF07/051107_164,PF09/090609_76,PF07/230407_201,PF09/060209_120,NC09/300509_13639,NC10/080810_1138"]
["Su et al A",1,"Genome analysis of dengue virus strains isolated in Taiwan- Identification of recombination in the non-structural gene region in type-2 dengue viruses","Unpublished","unknown","Taiwan_2K0713"]
["Kato et al",1,"analysis of Dengue virus serotype 4 infection in bonnet monkey","Unpublished","unknown","D4/Hu/India/NIID48/2009"]
["Pyke et al A",1,"First Reported Complete Genome Sequence of a Dengue Virus Serotype 4 Strain from Papua New Guinea","Microbiol Resour Announc 7 (12), e01082-18 (2018)","unknown","PNG_2016a"]
["Idris et al",1,"Genetic analyses of dengue virus isolated from patients with single and dual infection","Unpublished","unknown","MS12006482"]
["Jiang et al B",2,"The genetic characteristics and diversity of dengue virus during outbreak of dengue in Guangzhou, China, 2010- 2021","Unpublished","unknown","21XN04403_D4,21XN02436_D2"]
["Zhang et al A",1,"Complete genome of Dengue virus type 4","Unpublished","unknown","GZ1D4"]
["Zhao et al A",1,"Direct Submission","Submitted (29-JAN-2015) Department of Virology, Beijing Institute of Microbiology and Epidemiology, No. 20 Dongda Street, Fengtai District, Beijing 100071, China","unknown","DENV4/CN/GZ29/2010"]
["Zhao et al B",1,"Direct Submission","Submitted (09-MAR-2021) Institute of infectious disease, Guangzhou Eighth People's Hospital, 627 East Dongfeng Road, Guangzhou, Guangdong 510060, China","unknown","GZ8H/2019130/2019/IV"]
["Shah et al",7,"High dengue burden and circulation of all four serotypes among children with undifferentiated fever in Kenya (2014-2017)","Unpublished","unknown","KFA236,CFA298,CFA379,CFA193,CFA201,CFA348,CFA346"]
["Bifani et al",2,"Attenuated dengue viruses are genetically more diverse than their respective wild-type parents","Unpublished","unknown","V1036,PDK48"]
["Aubry et al B",1,"Single-stranded positive-sense RNA viruses generated in days using infectious subgenomic amplicons","J. Gen. Virol. 95 (PT 11), 2462-2467 (2014)","https://www.ncbi.nlm.nih.gov/pubmed/25053561","Dakar_HD_34460"]
["Nunes et al A",1,"Multiple dengue 4 introductions in Brazil: evolutionary aspects and implications for virus dispersion","Unpublished","unknown","H402276"]
["Kelly et al A",1,"Identification of mutations in a candidate dengue 4 vaccine strain 341750 PDK20 and construction of a full-length cDNA clone of the PDK20 vaccine candidate","Vaccine 28 (17), 3030-3037 (2010)","https://www.ncbi.nlm.nih.gov/pubmed/19874927","V341750"]
["Henn et al B",7,"Direct Submission","Submitted (08-AUG-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/CO/BID_V1600/1997,DENV_2/CO/BID_V1594/2005,DENV_3/US/BID_V1606/2004,DENV_3/US/BID_V1608/2004,DENV_3/US/BID_V1610/2004,DENV_1/VN/BID_V1683/2007,DENV_1/VN/BID_V1584/2007"]
["Henn et al C",15,"Direct Submission","Submitted (20-MAY-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/US/BID_V2431/1995,DENV_4/US/BID_V2430/1994,DENV_4/US/BID_V2439/1996,DENV_4/US/BID_V2435/1996,DENV_4/US/BID_V2437/1996,DENV_2/NI/BID_V668/2004,DENV_2/NI/BID_V2680/2006,DENV_3/LK/BID_V2407/1983,DENV_3/LK/BID_V2405/1983,DENV_3/LK/BID_V2410/1983,DENV_3/NI/BID_V2419/1998,DENV_3/CO/BID_V2978/2001,DENV_1/NI/BID_V617/2004,DENV_1/VN/BID_V2796/2007,DENV_1/VN/BID_V2768/2007"]
["Wong-Arambula et al A",3,"Direct Submission","Submitted (27-JAN-2022) InDRE, Secretaria de Salud, Francisco de P. Miranda 177 bis Lomas de Plateros, Mexico, Mexico 01480, Mexico","unknown","V668,V623,V582"]
["Baronti et al A",1,"Direct Submission","Submitted (13-NOV-2014) UMR190-Unite des Virus Emergents, IRD, 27 Bd Jean Moulin, Marseille, Bouches du Rhone 13005, France","unknown","MRS_6169642904/2014"]
["Lednicky et al",1,"Dengue 4 virus from a Haitian child in 2014","Unpublished","unknown","Haiti/0324/2014"]
["Henn et al D",10,"Direct Submission","Submitted (19-MAR-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/US/BID_V2440/1996,DENV_4/VE/BID_V2176/2000,DENV_2/VE/BID_V2476/2008,DENV_2/NI/BID_V2659/2000,DENV_2/NI/BID_V2660/2000,DENV_3/VE/BID_V2484/2007,DENV_3/US/BID_V1611/2004,DENV_3/NI/BID_V2653/2008,DENV_1/VE/BID_V2469/2008,DENV_1/TH/BID_V2273/2001"]
["Henn et al E",9,"Direct Submission","Submitted (01-APR-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/US/BID_V2444/1998,DENV_4/US/BID_V2448/1999,DENV_4/VE/BID_V2492/2007,DENV_2/LK/BID_V2416/1996,DENV_3/LK/BID_V2414/1985,DENV_3/LK/BID_V2412/1989,DENV_3/LK/BID_V2413/1993,DENV_3/LK/BID_V2411/1989,DENV_3/MZ/BID_V2418/1985"]
["Henn et al F",2,"Direct Submission","Submitted (25-JUN-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/US/BID_V1083/1986,DENV_2/CO/BID_V1599/1944"]
["Nunes et al B",3,"Phylogeography of dengue virus serotype 4, Brazil, 2010-2011","Emerging Infect. Dis. 18 (11), 1858-1864 (2012)","https://www.ncbi.nlm.nih.gov/pubmed/23092706","H775222,H780120,H780563"]
["Henn et al G",24,"Direct Submission","Submitted (15-JAN-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/VE/BID_V2170/1999,DENV_4/VE/BID_V2172/1999,DENV_4/VE/BID_V2173/1999,DENV_4/VE/BID_V2177/2000,DENV_2/VE/BID_V2159/2005,DENV_3/VE/BID_V2266/2006,DENV_3/VE/BID_V2210/2002,DENV_3/VE/BID_V2209/2002,DENV_3/VE/BID_V2182/2001,DENV_3/VE/BID_V2183/2001,DENV_3/VE/BID_V2174/2000,DENV_3/VE/BID_V2175/2000,DENV_3/VE/BID_V2231/2004,DENV_3/VE/BID_V2212/2003,DENV_3/VE/BID_V2195/2001,DENV_3/VE/BID_V2247/2005,DENV_3/VE/BID_V2215/2003,DENV_3/VE/BID_V2256/2005,DENV_3/VE/BID_V2226/2004,DENV_1/VE/BID_V2162/1997,DENV_1/VE/BID_V2229/2004,DENV_1/VE/BID_V2263/2006,DENV_1/VE/BID_V2250/2005,DENV_1/VE/BID_V2255/2006"]
["Henn et al H",7,"Direct Submission","Submitted (05-OCT-2011) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_4/VE/BID_V2167/1998,DENV_2/VN/BID_V2947/1988,DENV_2/BR/BID_V2377/2000,DENV_2/BR/BID_V3580/2008,DENV_2/VE/BID_V2161/2001,DENV_2/NI/BID_V2661/2000,DENV_1/SV/BID_V2938/1993"]
["Stewart-Ibarra et al",8,"The high burden of dengue and chikungunya in southern coastal Ecuador: Epidemiology, clinical presentation, and phylogenetics from a prospective study in Machala in 2014-2015","Unpublished","unknown","00151_P,TD_00077_P,TD_00078_P,TD_00082_P,00147_P,00121_P,00145_P,00142_P"]
["Rodriguez-Roche et al A",3,"Population structure of the dengue viruses, Aragua, Venezuela, 2006-2007. Insights into dengue evolution under hyperendemic transmission","Infect. Genet. Evol. 12 (2), 332-344 (2012)","https://www.ncbi.nlm.nih.gov/pubmed/22197765","VE_61027_2007,VE_61069_2006,VE_61051_2006"]
["Lizarazo et al A",5,"Applied shotgun metagenomics approach for the genetic characterization of Dengue viruses","Unpublished","unknown","DENVEN_CC0186,DENVEN_CC0030,IDAMS_910105,IDAMS_910135,DENVEN_CC0010"]
["Nascimento et al",1,"Complete genome of a dengue virus serotype 4 strain from Amazonas, Brazil","Mem. Inst. Oswaldo Cruz 111 (2), 141-143 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/26841048","BR005AM_2011"]
["Vedovello et al",12,"Molecular Surveillance of Dengue virus (serotypes 1 to 4) and its several genotypes in a medium size city of southeastern Brazil, during nine epidemics years (2006 to 2014)","Unpublished","unknown","BR/SJRP/614/2013,BR/SJRP/500/2012,BR/SJRP/506/2012,BR/SJRP/610/2013,BR/SJRP/733/2013,BR/SJRP/350/2008,BR/SJRP/779/2013,BR/SJRP/846/2013,BR/SJRP/572/2012,DENV1_BR/SJRP/484/2012,BR/SJRP/2271/2014,BR/SJRP/885/2013"]
["Graf et al",3,"Direct Submission","Submitted (10-FEB-2020) Krisp, University Kwazulu-Natal, 719 Umbilo Rd, Durban 4001, South Africa","unknown","PY19,PY36,PY35"]
["Zuchi et al",4,"Introduction and Circulation of Dengue Virus Type 4 in the State of Mato Grosso, Brasil, 2012","Unpublished","unknown","DENV_4/MT/BR48_TVP17934/2012,DENV_4/MT/BR47_TVP17933/2012,DENV_4/MT/BR55_TVP17941/2012,DENV_4/MT/BR28_TVP17914/2012"]
["Stephenson et al",1,"Direct Submission","Submitted (12-FEB-2019) Environmental and Global Health, University of Florida - Gainesville, 1225 Center Drive, Room 4155, Gainesville, FL 32610, USA","unknown","Haiti_0075/2015"]
["Ortiz-Baez et al",3,"First Genome Sequences of DENV isolated during the largest DENV-4 outbreak in Sao Paulo, Brazil","Unpublished","unknown","GU11/2013/BR,GU145/2013/BR,GU128/2013/BR"]
["Kuczera et al",1,"Isolation of dengue virus serotype 4 genotype II from a patient with high viral load and a mixed Th1/Th17 inflammatory cytokine profile in South Brazil","Virol. J. 13 (1), 93 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/27267473","LRV13/422"]
["Franco et al",1,"First Report of Sylvatic DENV-2-Associated Dengue Hemorrhagic Fever in West Africa","PLoS Negl Trop Dis 5 (8), E1251 (2011)","https://www.ncbi.nlm.nih.gov/pubmed/21829739","EEB_17"]
["Kaptein et al",1,"A pan-serotype dengue virus inhibitor targeting the NS3-NS4B interaction","Nature 598 (7881), 504-509 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/34616043","DENV_2_Rega_Lab"]
["Kar et al A",1,"Dengue virus type 2 isolate P23085 INDI-60 Complete Sequence","Unpublished","unknown","P23085_INDI_60"]
["Vasilakis et al A",3,"Genetic and phenotypic characterization of sylvatic dengue virus type 2 strains","Virology 377 (2), 296-307 (2008)","https://www.ncbi.nlm.nih.gov/pubmed/18570968","V1328,IQT_1950,V1349"]
["Khoo et al",1,"Isolation of midgut escape mutants of two American genotype dengue 2 viruses from Aedes aegypti","Virol. J. 10 (1), 257 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/23937713","DENV2_PR159"]
["Rodriguez-Roche et al B",3,"Virus evolution during a severe dengue epidemic in Cuba, 1997","Virology 334 (2), 154-159 (2005)","https://www.ncbi.nlm.nih.gov/pubmed/15780865","I348600,Cuba205/97,Cuba58/97"]
["Leitmeyer et al",1,"Dengue virus structural differences that correlate with pathogenesis","J. Virol. 73 (6), 4738-4747 (1999)","https://www.ncbi.nlm.nih.gov/pubmed/10233934","Iqt2913"]
["Henn et al I",14,"Direct Submission","Submitted (06-APR-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/HN/BID_V2945/1984,DENV_2/IN/BID_V2961/2006,DENV_2/VI/BID_V2948/1990,DENV_2/VE/BID_V2941/1998,DENV_2/KN/BID_V2951/2001,DENV_2/MX/BID_V2953/2002,DENV_2/MX/BID_V2964/2008,DENV_3/WS/BID_V2973/1995,DENV_3/CK/BID_V2972/1991,DENV_3/MX/BID_V2985/2003,DENV_3/TT/BID_V2982/2002,DENV_3/NI/BID_V2935/2008,DENV_1/PF/BID_V2939/2001,DENV_1/VN/BID_V2847/2005"]
["Steel et al",19,"Natural attenuation of dengue virus type-2 after a series of island outbreaks: a retrospective phylogenetic study of events in the South Pacific three decades ago","Virology 405 (2), 505-512 (2010)","https://www.ncbi.nlm.nih.gov/pubmed/20663532","D2/NC/UH97/1972,D2/FJ/UH21/1971,D2/FJ/UH22/1971,D2/FJ/UH40/1971,D2/PF/UH50/1972,D2/PF/UH57/1971,D2/NC/UH37/1971,D2/PF/UH00/1973,D2/AS/UH73/1972,D2/AS/UH85/1972,D2/AS/UH77/1972,D2/AS/UH79/1972,D2/TO/UH04/1974,D2/TO/UH94/1974,D2/TO/UH19/1974,D2/TO/UH16/1974,D2/TO/UH20/1974,D2/TO/UH39/1974,D2/TO/UH44/1974"]
["Blaney et al A",1,"Vaccine candidates derived from a novel infectious cDNA clone of an American genotype dengue virus type 2","BMC Infect. Dis. 4, 39 (2004)","https://www.ncbi.nlm.nih.gov/pubmed/15461822","Tonga/74"]
["Vaddadi et al B",2,"Molecular characterization of dengue virus strains occurring in South India","Unpublished","unknown","UoH_58620,UoH_583351"]
["Pattabiraman et al A",6,"Clinical and Molecular Characterization of dengue viruses, Bangalore, India","Unpublished","unknown","FT_DNS1_472_S32_R3,FT_J250_S45_R2,FT_J226_S40_R2,FT_J92_S12_R2,FT_DNS1_473_S33_R3,FT_DNS1_492_S91_R3"]
["Dash et al A",3,"Complete genome sequencing and evolutionary analysis of Indian isolates of Dengue virus type 2","Biochem. Biophys. Res. Commun. 436 (3), 478-485 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/23756811","V1392,RR44,Od2112"]
["Pattabiraman et al B",2,"Clinical and Molecular Characterization of dengue Delhi, India","Unpublished","unknown","FT_T85_S81_R2,FT_T40_S73_R2"]
["Koo et al B",3,"Molecular characterization of Dengue viruses type 2 isolated in Korean travelers","Unpublished","unknown","V43253,V43254,V43248"]
["Martinez et al",6,"Molecular and genomic investigation of an urban outbreak of dengue serotype 2 in Angola 2017-2019","Unpublished","unknown","D/18/28_P32,U75168_P15,U74058_P5,A25665_P7,V85,D/18/20_P26"]
["Singh et al",2,"Comparative whole genome analysis of dengue virus serotype-2 strains differing in trans-endothelial cell leakage induction in vitro","Infect. Genet. Evol. 34-43 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/28456663","RGCB880/2010,RGCB921/2011"]
["Kar et al B",2,"Isolation and molecular characterization of Dengue virus clinical isolates from pediatric patients in New Delhi","Int. J. Infect. Dis. (2018) In press","https://www.ncbi.nlm.nih.gov/pubmed/30528666","Cosmopolitan,T38_S72"]
["Kamau et al",2,"Genetic diversity of Dengue virus serotype 2 circulating in Kilifi coastal Kenya","Unpublished","unknown","DENV2/KLF/004/2014,DENV2/KLF/003/2014"]
["Alfsnes et al",18,"Tracing and tracking the emergence, epidemiology and dispersal of dengue virus to Africa during the 20th century","One Health 13, 100337 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/34746356","KAJP10_DENV2_Kenya_EasternAfrica_2013,KAJP22_DENV2_Somalia_EasternAfrica_1996,KAJP14_DENV2_Tanzania_EasternAfrica_2014_06,KAJP16_DENV2_Somalia_EasternAfrica_2015,KAJP13_DENV2_Tanzania_EasternAfrica_2014,KAJP15_DENV2_Tanzania_EasternAfrica_2014,KAJP32_DENV3_Thailand_SouthEastAsia_1991_05_21,KAJP33_DENV3_Thailand_SouthEastAsia_1991_9_17,KAJP3_DENV3_Kenya_EasternAfrica_2011,KAJP19_DENV3_SaudiArabia_WesternAsia_2016,KAJP5_DENV1_Angola_CentralAfrica_2013,KAJP17_DENV1_Eritrea_EasternAfrica_2015,KAJP18_DENV1_Kenya_EasternAfrica_2016,KAJP30_DENV1_Thailand_SouthEastAsia_1990_05_23,KAJP34_DENV1_Thailand_SouthEastAsia_1992_02_12,KAJP4_DENV1_Somalia_EasternAfrica_2011,KAJP7_DENV1_Kenya_EasternAfrica_2013,KAJP2_DENV1_Gambia_WesternAfrica_2010"]
["Langat et al",8,"Direct Submission","Submitted (17-OCT-2019) Arbovirology/Viral Haemorrhagic Fevers Lab, Kenya Medical Research Institute, Kemri Nairobi, Mbagathi Road, Nairobi, Nairobi 00621, Kenya","unknown","V88413,V236513,V65513,V4214,V172413,V17717,V237513,V45614"]
["Masika et al",3,"Direct Submission","Submitted (01-FEB-2019) Department of Virology, University of Helsinki, POB 21, Haartman Institute, Haartmaninkatu 3, Helsinki, Uusimaa FIN-00290, Finland","unknown","2016_c96_Wundanyi,222_Voi,2016_85A_Wundanyi"]
["Pollett et al",2,"The evolution of dengue-2 viruses in Kenya","Unpublished","unknown","AFI_MDH_244,AFI_MDH_240"]
["Kimita et al A",1,"Complete Coding Sequences of Dengue Virus Type 2 from Febrile Patients Seen in Malindi District Hospital, Kenya during the 2017 Dengue Fever Outbreak","Unpublished","unknown","Mal_014"]
["Henn et al J",1,"Direct Submission","Submitted (03-JUN-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/LK/BID_V2422/2004"]
["Akram et al",3,"Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis","Virol. J. 12 (1), 148 (2015)","https://www.ncbi.nlm.nih.gov/pubmed/26395339","DENV_2/PK,DENV_2/PK/2013,DENV_2/PK/2011"]
["Azhar et al A",1,"Complete Genome Sequencing of Dengue Virus Type 2 from Saudi Arabia","Unpublished","unknown","Jeddah_2014"]
["Ali et al A",3,"Direct Submission","Submitted (19-JUL-2014) Department of Genetics, Hazara University, Dhodial, Mansehra, Khyber Pakhtunkhwa 092, Pakistan","unknown","D2/Pk/A1/2011,D2/Pk/A2/2011,D2/Pk/Swat_01"]
["Ali et al B",1,"Complete genome sequence of dengue virus 2/Pakistan/Swat-02 isolate","Unpublished","unknown","DENV_2/Pk/Swat_02"]
["Dash et al B",1,"Direct Submission","Submitted (14-MAR-2006) Virology Division, Defense R & D Establishment, Jhansi Road, Gwalior, MP 474 002, India","unknown","GWL18_INDI_01"]
["Fang et al",1,"Direct Submission","Submitted (11-AUG-2019) Dept. of Vector-borne Tropical Disease, National Institute of Parasitic Diseases (NIPD), Chinese Center for Disease Control and Prevention (China CDC), 207 Rui Jin Er Road, Shanghai, Shanghai 200025, China","unknown","SA_JD_AS_BM4_16_2_A9"]
["Jagtap et al A",1,"Clinical and Molecular Characterization of dengue viruses, mumbai, India","Unpublished","unknown","FT_MD_35_R4_DENV2_C_India"]
["Jagtap et al B",1,"Genomes of dengue viruses circulating in Jodhpur, India","Unpublished","unknown","FT_AJ_34_S73_R3_DENV2_Cosmopolitan_India"]
["Jagtap et al C",2,"Clinical and Molecular Characterization of dengue viruses, Jodhpur, India","Unpublished","unknown","FT_AJ_27_S45_R3,FT_AJ_39_S47_R3"]
["Sun et al A",2,"Impact of dengue virus (srotype DENV-2, DENV-3) cross infection onaggravating sympyoms in Balb/c mice","Unpublished","unknown","DV2_D13113,DV1_D13050"]
["Prat et al A",1,"Direct Submission","Submitted (21-NOV-2019) UMR190-Unite des virus emergents, UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Mediterranee Infection, 19-21 bd Jean Moulin, Marseille, Bouches du Rhone 13005, France","unknown","2014/FR/CNR_25865"]
["Xi et al",1,"Whole-genome analysis of dengue virus serotype 2 isolates in Yunnan, China","Unpublished","unknown","YN110123"]
["Zhao et al C",1,"Direct Submission","Submitted (24-MAY-2017) Yunnan Key Laboratory of Vaccine Research & Development on Severe Infectious Diseases, Institute of Medical Biology, Chinese Academy of Medical Sciences, 935 Jiao Ling Road, Kunming, Yunnan 650118, China","unknown","XSBN07"]
["Pattabiraman et al C",2,"Genomes of dengue viruses circulating in south India","Unpublished","unknown","R1_J22_DENV2,R1_J46_DENV2"]
["Mavingui et al",1,"Direct Submission","Submitted (06-AUG-2019) UMR PIMIT, Universite de La Reunion, CNRS, IRD, INSERM, 2 Maxime Riviere, Ste Clotilde 97490, Reunion","unknown","RU16417"]
["Christenbury et al",11,"A method for full genome sequencing of all four serotypes of the dengue virus","J. Virol. Methods 169 (1), 202-206 (2010)","https://www.ncbi.nlm.nih.gov/pubmed/20600330","DENV_2/ID/1017DN/1976,DENV_2/ID/1127DN/1976,DENV_2/ID/1070DN/1976,DENV_2/ID/1172DN/1976,DENV_2/ID/1023DN/1975,DENV_2/PR/13DN/1994,DENV_2/PR/3DN/1994,DENV_2/PR/46DN/1994,DENV_2/PR/42DN/1994,DENV_2/PR/12DN/1994,DENV_2/PR/36DN/1994"]
["Henn et al K",10,"Direct Submission","Submitted (22-OCT-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/BF/BID_V3502/1986,DENV_2/BR/BID_V3648/2008,DENV_3/IPC/BID_V4306/2007,DENV_3/IPC/BID_V3832/2007,DENV_3/BR/BID_V3585/2007,DENV_3/BR/BID_V3434/2006,DENV_1/VE/BID_V3552/2004,DENV_1/VE/BID_V3573/2007,DENV_1/VN/BID_V4020/2008,DENV_1/VN/BID_V4056/2008"]
["Key et al",1,"Direct Submission","Submitted (19-JAN-2022) Pathology and Laboratory Medicine, Emory University School of Medicine, 101 Woodruff Circle, Atlanta, GA 30322, USA","unknown","DSG2020_061"]
["Baronti et al B",1,"Complete coding sequences of two dengue virus type 2 isolates from an outbreak in Burkina Faso, 2016","Genome Announc (2017) In press","unknown","7754691/BF/2016"]
["Letizia et al",6,"Genomic Analysis of Dengue Virus Sequences from 2016/17 Burkina Faso Outbreaks","Unpublished","unknown","IP103,IP270,IP036,IP666,IP002,IP112"]
["Dieng et al",1,"Full genome analysis of circulating DENV-2 in Senegal reveals a regional diversification into separate clades","J Med Virol (2022) In press","https://www.ncbi.nlm.nih.gov/pubmed/35879861","V310621"]
["Fourie et al A",2,"Emergence of Dengue virus 2 in Mauritania and molecular characterization of its circulation in West Africa","Unpublished","unknown","2016/BF/CNR41166,2019/SN/CNR50154"]
["Stoek et al",1,"Detection of Rift Valley Fever and Dengue Virus in Mosquitoes in Mauritania","Unpublished","unknown","2018/MRT"]
["Fung et al",2,"The effect of low-number passage on dengue consensus genome and intra-host variant frequencies","J Gen Virol (2021) In press","unknown","KM279601_D2_1_cp1,AB204803_D1_5"]
["Yenamandra et al",10,"Evolution, heterogeneity and global dispersal of cosmopolitan genotype of Dengue virus type 2","Sci Rep 11 (1), 13496 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/34188091","SG_EHI_D2/5916Y14,SG_EHI_D2/27574Y18,SG_EHI_D2/43733Y16,SG_EHI_D2/26676Y13,SG_EHI_D2/38380Y15,SG_EHI_D2/28006Y16,SG_EHI_D2/2204Y16,SG_EHI_D2/14868Y16,SG_EHI_D2/35295Y18,SG_EHI_D2/51293Y18"]
["Wu et al B",12,"Direct Submission","Submitted (04-JUN-2019) Institute of Microbiology, Guangdong Provincial Center for Disease Control and Prevention;Institute for Viral Disease Control and Prevention, China Cdc, 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong 511430, China","unknown","D16168,D16161,D16005,D16032,D17029,D17040,D17007,D15341,D16046,D16152,D16166,D15335"]
["Pyke et al B",1,"First complete genome sequences of dengue virus serotype 2 strains from Vanuatu and the Solomon Islands","Microbiol Resour Announc (2018) In press","unknown","Van_2017"]
["Inizan et al A",2,"Molecular Characterization of Dengue Type 2 Outbreak in Pacific Islands Countries and Territories, 2017-2020","Viruses 12 (10), E1081 (2020)","https://www.ncbi.nlm.nih.gov/pubmed/32992973","New_Caledonia_2018_AVS123,New_Caledonia_2018_AVS127"]
["Ko et al",16,"Inter- and intra-host sequence diversity reveal the emergence of viral variants during an overwintering epidemic caused by dengue virus serotype 2 in southern Taiwan","PLoS Negl Trop Dis 12 (10), e0006827 (2018)","https://www.ncbi.nlm.nih.gov/pubmed/30286095","V1024,V921,V1008,V950,V1034,V915,V1030,V1185,V1615,V1252,V1280,V1335,V2191,V1421,V1364,V3012"]
["Chen et al A",3,"Evolution of dengue virus type 2 during two consecutive outbreaks in Taiwan in 2001-2","Unpublished","unknown","950_DF_11/12/2001,2208_DHF_09/13/2002,1421_DF_07/16/2002"]
["Pyke et al C",6,"Dengue viruses isolated in Queensland, Australia","Unpublished","unknown","ET300,TI2004,PNG_2013c,PNG_2015b,Phil2017,Cairns_2013b"]
["Bai et al B",2,"Dengue virus 2 polyprotein gene","Unpublished","unknown","GD09/93,GD05/98"]
["Baronti et al C",2,"Assessment of the antiviral activity of the FDA approved molecules against an extended panel of Flaviviruses","Unpublished","unknown","Toulon_CNR_25679/2014,Toulon_CNR_25329/2014"]
["Zhang et al B",3,"Direct Submission","Submitted (10-APR-2019) Guangzhou 8th People's Hospital, Guangzhou Medical University, 627 Dongfeng dong Road, Yuexiu District, Guangzhou, Guangdong 510182, China","unknown","GZ8H/162,GZ8H/310,GZ8H/215"]
["Su et al B",2,"An evolutionary study on Dengue Virus 2 in Guangzhou city, 2016-2018","Unpublished","unknown","GZ16XN11607,GZ18XN20669"]
["Zhao et al D",1,"Direct Submission","Submitted (04-AUG-2016) Institute of Infectious Disease, Guangzhou Eighth People's Hospital, 627 East Dongfeng Road, Guangzhou, Guangdong 213456, China","unknown","GZ8_12/S/Panyu/2014/DEV2"]
["Meschi et al",1,"Direct Submission","Submitted (11-OCT-2017) Laboratory of Virology, National Institute for Infectious Diseases 'L. Spallanzani', Via Portuense 292, Rome 00149, Italy","unknown","D2_K2_RIJ_059/Dar_es_Salaam_2014"]
["Lee et al A",2,"Dengue virus surveillance in Singapore reveals high viral diversity through multiple introductions and in situ evolution","Unpublished","unknown","SGEHI_D2_0462Y05,SGEHI_D2_0685Y04"]
["Hapuarachchi et al A",5,"Clinical Outcome and Genetic Differences within a Monophyletic Dengue Virus Type 2 Population","PLoS ONE 10 (3), E0121696 (2015)","https://www.ncbi.nlm.nih.gov/pubmed/25811657","SG_EHI_D286998Y10,SG_EHI_D2276Y09,DC410Y11,DC694Y12,DC610Y12"]
["Luang-Suarkia et al",6,"Dengue in Papua New Guinea","Unpublished","unknown","V100511,V101027,V80424,V80606,V80521,V71009"]
["Zhang et al C",1,"Complete Genome Sequencing of Dengue Virus Type 2","Unpublished","unknown","PG_CN10_13"]
["Sung et al",2,"Extended Evaluation of Virological, Immunological and Pharmacokinetic Endpoints of CELADEN: A Randomized, Placebo-Controlled Trial of Celgosivir in Dengue Fever Patients","PLoS Negl Trop Dis 10 (8), E0004851 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/27509020","D2/SG/CT41/2013,D3/SG/CT14/2012"]
["Pyke et al D",1,"Direct Submission","Submitted (23-JAN-2020) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, Queensland 4108, Australia","unknown","Rock_2019"]
["Ngwe Tun et al",3,"An Outbreak of Dengue Virus Serotype 2 Cosmopolitan Genotype in Nepal, 2017","Viruses 13 (8), 1444 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/34452310","SeqB102_DENV2_CONSENSUS,SeqB157_DENV2_CONSENSUS,SeqB159_DENV2_CONSENSUS"]
["Henn et al L",1,"Direct Submission","Submitted (21-MAY-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/GU/BID_V2950/2001"]
["Lin et al",3,"Complete Genome Sequencing of Dengue Virus Type I and Type II from Zhuhai city, China in 2012","Unpublished","unknown","ZH413_2,ZH415,ZH398"]
["Liu et al A",1,"Isolation of new Dengue virus","Unpublished","unknown","QML16"]
["Hardiyanto et al",4,"Whole genome sequencing and phylogenetic analysis of dengue virus isolated from Johor, Malaysia","Unpublished","unknown","TM220,TM308,TM45,TM188"]
["Zhao et al E",1,"Direct Submission","Submitted (24-JUL-2016) Institute of Infectious Disease, Guangzhou Eighth People's Hospital, 627 East Dongfeng Road, Guangzhou, Guangdong 231567, China","unknown","2015_CZ_7"]
["Yadav et al B",1,"Direct Submission","Submitted (17-FEB-2022) Maximum Containment Laboratory, National Institute of Virology, Pashan, Pune, Maharashtra 411021, India","unknown","MCL_21_H_11204_RNA_8485"]
["Dhanoa et al",2,"Impact of dengue virus (DENV) co-infection on clinical manifestations, disease severity and laboratory parameters","BMC Infect. Dis. 16 (1), 406 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/27514512","TM26,TM50"]
["Hapuarachchi et al B",1,"Direct Submission","Submitted (11-FEB-2019) Environmental Health Institute, National Environment Agency, 11, Biopolis Way, Helios Block #06-05/08, Singapore, Singapore 138667, Singapore","unknown","SG_EHI_D2/02862Y15"]
["De et al",2,"Dengue fever in Guangdong","Unpublished","unknown","D2/China/GD_/GD151663/2015,D1/China/GDfs/D17026_Malaysia_"]
["Rodrigo et al",5,"Single molecule, whole genome sequencing of dengue virus","Unpublished","unknown","S032,S006,S173,S076,S279"]
["Abeygoonawardena et al A",1,"Direct Submission","Submitted (12-MAR-2022) Bio Medical Laboratory-02, Faculty of Medicine, General Sir John Kotelawala Defence University, Kadawala Estate, Ratmalana, Western 10390, Sri Lanka","unknown","F_014"]
["Su et al C",4,"The genetic characteristics and diversity of dengue virus during outbreak of dengue in Guangzhou, China, in 2019","Unpublished","unknown","19XN19634,19XN08100,19XN29818f_DENV_1,2015XN14828"]
["Yu et al A",1,"Multiple lineages of Dengue virus serotype 2 cosmopolitan genotype caused a local dengue outbreak in Hangzhou, Zhejiang province, China, 2017","Unpublished","unknown","D2/CN/HZ_406_1/2017"]
["Guan et al A",1,"Direct Submission","Submitted (20-FEB-2019) Yunnan Key Laboratory of Vaccine Research & Development on Severe Infectious Diseases, Institute of Medical Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, 935 Jiaoling Road, Kunming, Yunnan 650000, China","unknown","HNQY2018005"]
["Poltep et al A",2,"Genetic Diversity of Dengue Virus in Clinical Specimens from Bangkok, Thailand, during 2018-2020: Co-Circulation of All Four Serotypes with Multiple Genotypes and/or Clades","Trop Med Infect Dis 6 (3), 162 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/34564546","DV2C_TM19_26,DV2A_TM19_13"]
["Jiang et al C",1,"Direct Submission","Submitted (09-DEC-2020) Derpartment of Virology and Immunity, Guangzhou Center for Disease Control and Prevention, Qide Road No. 1, Baiyun District, Guangzhou, Guangdong 510440, China","unknown","20XN94959_D2_FULL_local"]
["Bohl et al A",1,"Direct Submission","Submitted (09-NOV-2021) LMVR, Characterization of febrile disease landscape in Cambodia via metagenomic pathogen sequencing, 12735 Twinbrook Parkway 2E-32A, Rockville, MD 20852, USA","unknown","V1090008"]
["Bohl et al B",9,"Direct Submission","Submitted (08-NOV-2021) LMVR, Characterization of febrile disease landscape in Cambodia via metagenomic pathogen sequencing, 12735 Twinbrook Parkway 2E-32A, Rockville, MD 20852, USA","unknown","V100047720190620,V100043220190628,V109037220200827,V109038420200901,V109037720200829,V109034920200810,V109036320200813,V109033420200729,V109029820200630"]
["Rodriguez-Roche et al C",5,"First dengue haemorrhagic fever epidemic in the Americas, 1981: insights into the causative agent","Arch. Virol. (2014) In press","https://www.ncbi.nlm.nih.gov/pubmed/25091743","Cuba_A15_1981,Cuba_A169_1981,Cuba_A132_1981,Cuba_A115_1981,Cuba_A35_1981"]
["Reyes-Ruiz et al",3,"Mosquito cells persistently infected with dengue virus produce viral particles with host-dependent replication","Virology 531, 1-18 (2019)","https://www.ncbi.nlm.nih.gov/pubmed/30844508","C6L_48h,C6L_P56,C6L_P30"]
["Henn et al M",6,"Direct Submission","Submitted (07-APR-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/PG/BID_V2618/2008,DENV_2/TH/BID_V2616/1996,DENV_2/NI/BID_V2573/2005,DENV_2/NI/BID_V2572/2005,DENV_2/NI/BID_V1295/2007,DENV_3/BR/BID_V2380/2001"]
["Gruenberg et al",1,"Partial nucleotide sequence and deduced amino acid sequence of the structural proteins of dengue virus type 2, New Guinea C and PUO-218 strains","J. Gen. Virol. 69 (Pt 6), 1391-1398 (1988)","https://www.ncbi.nlm.nih.gov/pubmed/3385407","New_Guinea_C"]
["Henn et al N",4,"Direct Submission","Submitted (14-OCT-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","New_Guinea_C_derivative,DENV_3/US/BID_V1737/1999,DENV_1/US/BID_V1738/1998,DENV_1/US/BID_V1734/1995"]
["Henn et al O",2,"Direct Submission","Submitted (14-JAN-2011) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/TW/BID_V5054/2008,DENV_2/TW/BID_V5056/2008"]
["Plummer et al",1,"Dengue Viral Evolution Under a Host-Targeted Antiviral","J. Virol. (2015) In press","https://www.ncbi.nlm.nih.gov/pubmed/25762732","GW6"]
["Goh et al",1,"Molecular determinants of plaque size as an indicator of dengue virus attenuation","Sci Rep 6, 26100 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/27185466","V16681"]
["Zhang et al D",6,"Structure and age of genetic diversity of dengue virus type 2 in Thailand","J. Gen. Virol. 87 (PT 4), 873-883 (2006)","https://www.ncbi.nlm.nih.gov/pubmed/16528037","ThD2_0038_74,ThD2_0498_84,ThD2_0168_79,ThD2_0433_85,ThD2_0026_88,ThD2_0284_90"]
["Juarez Perez et al",1,"Evolutionary relationships of the DEN-2 Bank74 strain","Unpublished","unknown","Bangkok_1974"]
["Kelly et al B",1,"Evolution of attenuating mutations in dengue-2 strain S16803 PDK50 vaccine and comparison of growth kinetics with parent virus","Virus Genes 43 (1), 18-26 (2011)","https://www.ncbi.nlm.nih.gov/pubmed/21461924","S16803"]
["Vazeille-Falcoz et al",1,"Direct Submission","Submitted (06-DEC-2018) Cellule d'Intervention Biologique d'Urgence (CIBU), Institut Pasteur, 25-28 rue du docteur Roux, Paris, Ile de France 75015, France","unknown","DENV_2/TH/1974"]
["Marano et al",1,"Dengue Virus Type 2, Strain PUO-218, Complete Genome","Unpublished","unknown","PUO_218"]
["Henn et al P",1,"Direct Submission","Submitted (11-FEB-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/TH/BID_V2301/2001"]
["Berry et al A",12,"Precision tracing of household dengue spread in Kamphaeng Phet, Thailand, using inter- and intra-host viral variation data: Implications for dengue surveillance and control","Unpublished","unknown","KDH0003A_KT_11/12/2009,KDC0368A_NB_09/14/2010,KDC0378A_NB_09/14/2010,KDH0271A_TN_08/16/2012,KDH0010A_03/03/2010,KDH0006A_02/22/2010,KDC0101A_03/30/2010,KDC1148A_10/10/2012,KDH0226A_05/29/2012,KDH0112A_04/21/2011,KDC0495A_04/26/2011,KDH0154A_07/19/2011"]
["Hang et al",4,"Dengue virus serotype and genotype shifts in southern Vietnam revealed by whole genome sequencing","Unpublished","unknown","DF380,MD861,MD1270,CSF381"]
["Henn et al Q",2,"Direct Submission","Submitted (30-MAR-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/VN/BID_V922/2006,DENV_1/NI/BID_V667/2005"]
["Yang et al A",3,"Molecular epidemiology of dengue virus in Taiwan","Unpublished","unknown","D2/Taiwan/407TC9509a,D3/Vietnam/9809aTw,D1/Taiwan/813KH9809b"]
["Henn et al R",49,"Direct Submission","Submitted (11-FEB-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/VN/BID_V757/2003,DENV_2/VN/BID_V759/2003,DENV_2/US/BID_V1164/1986,DENV_2/US/BID_V1174/1987,DENV_2/US/BID_V1172/1987,DENV_2/US/BID_V1171/1987,DENV_2/US/BID_V1167/1987,DENV_2/US/BID_V1170/1987,DENV_2/US/BID_V1169/1987,DENV_2/US/BID_V851/1990,DENV_2/US/BID_V687/1989,DENV_2/US/BID_V1181/1989,DENV_2/US/BID_V1180/1989,DENV_2/US/BID_V1182/1989,DENV_2/US/BID_V855/1992,DENV_2/US/BID_V684/1994,DENV_2/US/BID_V1054/1996,DENV_2/US/BID_V1175/1988,DENV_2/US/BID_V1179/1989,DENV_2/US/BID_V1178/1989,DENV_2/US/BID_V686/1989,DENV_2/US/BID_V1183/1990,DENV_2/US/BID_V688/1989,DENV_2/US/BID_V1188/1990,DENV_2/US/BID_V1189/1990,DENV_2/US/BID_V1360/1993,DENV_2/US/BID_V1176/1988,DENV_2/US/BID_V690/1988,DENV_2/US/BID_V685/1988,DENV_2/US/BID_V1084/1998,DENV_2/US/BID_V591/2002,DENV_2/US/BID_V588/2006,DENV_2/US/BID_V1035/2006,DENV_2/US/BID_V1036/2006,DENV_2/US/BID_V587/2006,DENV_2/US/BID_V1166/1987,DENV_2/US/BID_V1177/1989,DENV_2/US/BID_V678/1998,DENV_2/US/BID_V1052/1998,DENV_2/NI/BID_V556/2005,DENV_2/NI/BID_V613/2005,DENV_2/NI/BID_V672/2005,DENV_2/NI/BID_V654/2005,DENV_2/NI/BID_V573/2006,DENV_2/NI/BID_V1312/2007,DENV_3/US/BID_V1075/1998,DENV_3/US/BID_V1078/2003,DENV_1/VE/BID_V1135/2007,DENV_1/VN/BID_V767/2003"]
["Henn et al S",12,"Direct Submission","Submitted (13-MAR-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/US/BID_V1163/1986,DENV_2/US/BID_V1368/1995,DENV_2/US/BID_V1356/1993,DENV_2/US/BID_V1398/1997,DENV_2/US/BID_V1395/1997,DENV_2/US/BID_V1367/1995,DENV_2/US/BID_V1404/1997,DENV_2/US/BID_V1401/1997,DENV_2/US/BID_V1399/1997,DENV_2/US/BID_V1409/1997,DENV_2/US/BID_V1397/1997,DENV_2/US/BID_V1373/1995"]
["Zody et al A",10,"Direct Submission","Submitted (10-DEC-2013) Broad Institute of MIT & Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA","unknown","DENV_2/PR/BID_V1361/1993,DENV_2/PR/BID_V1408/1997,DENV_2/PR/BID_V856/1986,DENV_2/MX/BID_V3771/2003,DENV_2/NI/BID_V2335/2001,DENV_2/NI/BID_V2345/2000,DENV_2/NI/BID_V2672/2001,DENV_2/NI/BID_V2336/2001,DENV_2/NI/BID_V2682/2006,DENV_1/MX/BID_V3751/2008"]
["Henn et al T",1,"Direct Submission","Submitted (17-APR-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/US/BID_V1061/1989"]
["Henn et al U",3,"Direct Submission","Submitted (27-MAR-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/US/BID_V1378/1996,DENV_2/NI/BID_V1211/2007,DENV_1/NI/BID_V653/2004"]
["Henn et al V",3,"Direct Submission","Submitted (25-APR-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/US/BID_V1424/1996,DENV_2/US/BID_V1428/1999,DENV_1/VN/BID_V1544/2007"]
["Henn et al W",12,"Direct Submission","Submitted (02-MAY-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/US/BID_V1462/2000,DENV_2/US/BID_V1469/2001,DENV_2/US/BID_V1492/2003,DENV_2/US/BID_V1487/2003,DENV_2/US/BID_V1497/2005,DENV_2/US/BID_V1496/2004,DENV_2/US/BID_V1434/2004,DENV_2/VE/BID_V1456/1996,DENV_2/US/BID_V1387/1998,DENV_2/US/BID_V1439/2005,DENV_3/US/BID_V1466/1999,DENV_3/US/BID_V1491/2003"]
["Henn et al X",2,"Direct Submission","Submitted (01-MAY-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/US/BID_V1482/2003,DENV_3/US/BID_V1480/2003"]
["Faria et al",4,"Twenty Years of DENV-2 Activity in Brazil: Molecular Characterization and Phylogeny of Strains Isolated from 1990 to 2010","PLoS Negl Trop Dis 7 (3), E2095 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/23516646","BR42727/RJ/91,BR41768/RJ/90,BR39145/RJ/90,BR48622/CE/94"]
["Torres et al A",5,"Dengue virus serotype 2 intrahost diversity in patients with different clinical outcomes","Unpublished","unknown","134denv2_BR_Rj,136denv2_BR_Rj,132denv2_BR_Rj,133denv2_BR_Rj,131denv2_BR_Rj"]
["Silva et al A",7,"Molecular characterization of dengue virus circulating in Pernambuco-Brazil:epidemiological implications","Unpublished","unknown","87086/BR_PE/02,72144/BR_PE/00,3275/BR_PE/95,3311/BR_PE/95,3337/BR_PE/95,37473/BR_PE/97,57135/BR_PE/99"]
["Williams et al",7,"Lineage II of Southeast Asian/American DENV-2 is Associated with a Severe Dengue Outbreak in the Peruvian Amazon","Am. J. Trop. Med. Hyg. 91 (3), 611-620 (2014)","https://www.ncbi.nlm.nih.gov/pubmed/25002298","DENV_2/PE/FMD2303/2009,DENV_2/PE/IQA_2080/2010,DENV_2/PE/FPI01345/2011,DENV_2/PE/FPI1617/2011,DENV_2/PE/IQA_2042/2010,DENV_2/PE/IQA_1995/2010,DENV_2/PE/FPI01777/2011"]
["Henn et al Y",3,"Direct Submission","Submitted (28-FEB-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/US/BID_V1087/1991,DENV_3/VE/BID_V1116/2001,DENV_3/VE/BID_V911/2001"]
["Dussart et al",8,"Dengue virus type 2 evolution in French Guiana through 1993-2006: recombination, selection and migration patterns at light of full-length sequences","Unpublished","unknown","FGU_Jun_97,FGU_Fev_98,FGU_May_99,FGU_Jan_00,GUA_Oct_06,FGU_Apr2_06,FGU_Jan1_06,FGU_Feb_93"]
["Henn et al Z",6,"Direct Submission","Submitted (20-MAR-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/BR/BID_V2386/2003,DENV_2/BR/BID_V2399/2007,DENV_3/BR/BID_V2403/2008,DENV_1/BR/BID_V2384/2003,DENV_1/BR/BID_V2381/2002,DENV_1/BR/BID_V2401/2008"]
["Aragao et al",1,"Natural Infection of Aedes aegypti by Chikungunya and Dengue type 2 Virus in a Transition Area of North-Northeast Brazil","Viruses 11 (12), 1126 (2019)","https://www.ncbi.nlm.nih.gov/pubmed/31817553","BeAr849487"]
["Adelino et al",18,"Epidemiological and genomics insights from the 2015-2019 dengue virus 1 and 2 epidemics in the most affected Brazilian regions","Unpublished","unknown","OPAS82,CG02,CG15,OPAS08,OPAS93,OPAS96,OPAS14,OPAS125,OPAS122,OPAS177,OPAS176,OPAS172,OPAS173,OPAS92,OPAS174,OPAS165,OPAS167,OPAS168"]
["Torres et al B",6,"Dengue Virus Serotype 2 Intrahost Diversity in Patients with Different Clinical Outcomes","Viruses 13 (2), 349 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/33672226","V174,V188,157denv2_BR_Rj,V186,V187,154denv2_BR_Rj"]
["Sacchi et al A",2,"Diversity of Dengue 2 in Sao Paulo, Brazil","Unpublished","unknown","NS8187,NS7253"]
["de Jesus et al",3,"Genomic detection of a virus lineage replacement event of dengue virus serotype 2 in Brazil, 2019","Mem. Inst. Oswaldo Cruz 115, e190423 (2020)","https://www.ncbi.nlm.nih.gov/pubmed/32428189","4210_DENV2_SP_ARA_2019_02_15,144_DENV2_SP_SJRP_2019_04_29,126_DENV2_SP_SJRP_2017_06_07"]
["Brito et al",2,"Lying in wait: the resurgence of dengue virus after the Zika epidemic in Brazil","Unpublished","unknown","USP_LC_269,USP_CB_53"]
["White et al A",1,"Mixed Chikungunya and Dengue 2 virus infection in a Haitian child in 2014","Unpublished","unknown","Haiti_0078/2014"]
["Iovine et al",1,"Coinfection With Zika and Dengue-2 Viruses in a Traveler Returning From Haiti, 2016: Clinical Presentation and Genetic Analysis","Clin. Infect. Dis. (2016) In press","https://www.ncbi.nlm.nih.gov/pubmed/27694479","2/Haiti_1/2016"]
["White et al B",1,"Complete Genome Sequence of Dengue virus Type 2 from a Resident of North-Central Florida with Locally Transmitted Dengue Fever","Genome Announc 5 (31), e00782-17 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/28774993","UF_1/Gainesville/2016"]
["Henn et al AA",6,"Direct Submission","Submitted (15-MAY-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/VE/BID_V1457/1996,DENV_3/US/BID_V1453/1999,DENV_3/US/BID_V1465/2000,DENV_3/US/BID_V1490/2003,DENV_3/US/BID_V1449/1998,DENV_3/US/BID_V1454/1999"]
["Blohm et al",1,"Complete genome sequence of dengue virus serotype 2, Asian/American genotype, isolated from the urine of a Venezuelan child with hemorrhagic fever in 2016","Genome Announc 6, e00529-18 (2018)","unknown","VEN_HUPAZ_1/2016"]
["Lizarazo et al B",2,"Complete coding sequences of five dengue virus type 2 clinical isolates from Venezuela obtained through shotgun metagenomics","Unpublished","unknown","DENV_2/VE/IDAMS/921099,DENV_2/VE/IDAMS/910121"]
["Zarate et al",1,"Complete genome of DENV2 isolated from mosquitoes in Mexico","Infect. Genet. Evol. (2019) In press","https://www.ncbi.nlm.nih.gov/pubmed/30905775","G2AE"]
["Henn et al AB",2,"Direct Submission","Submitted (10-FEB-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/NI/BID_V2364/2000,DENV_2/NI/BID_V2352/2007"]
["Henn et al AC",4,"Direct Submission","Submitted (08-JUN-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/NI/BID_V4158/2006,DENV_3/NI/BID_V4767/2009,DENV_3/NI/BID_V4757/2009,DENV_1/VN/BID_V3906/2008"]
["Henn et al AD",9,"Direct Submission","Submitted (01-DEC-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/NI/BID_V1311/2007,DENV_3/US/BID_V2118/2001,DENV_3/US/BID_V2113/2000,DENV_3/US/BID_V2112/2000,DENV_3/US/BID_V2122/2002,DENV_3/US/BID_V2098/1999,DENV_3/US/BID_V2119/2002,DENV_1/US/BID_V2130/1995,DENV_1/US/BID_V2135/1992"]
["Henn et al AE",2,"Direct Submission","Submitted (07-OCT-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_2/NI/BID_V1194/2007,DENV_3/VE/BID_V1590/2004"]
["Diaz et al",1,"The reintroduction of DENV-2 in 2011 in Panama and subsequent outbreak characteristic","Acta Trop. 177, 58-65 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/28986247","PA250330"]
["Zody et al B",23,"Direct Submission","Submitted (22-JAN-2014) Broad Institute of MIT & Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA","unknown","DENV_2/MX/BID_V8199/2011,DENV_3/PE/BID_V6159/2004,DENV_3/PE/BID_V6170/2002,DENV_3/PE/BID_V6168/2002,DENV_3/PE/BID_V7043/2004,DENV_3/PE/BID_V7042/2004,DENV_3/PE/BID_V7090/2008,DENV_3/PE/BID_V7082/2005,DENV_3/PE/BID_V7068/2008,DENV_1/MX/BID_V7625/2011,DENV_1/MX/BID_V7624/2011,DENV_1/MX/BID_V7594/2007,DENV_1/MX/BID_V7572/2007,DENV_1/MX/BID_V7568/2008,DENV_1/MX/BID_V7606/2008,DENV_1/MX/BID_V7600/2008,DENV_1/MX/BID_V7599/2008,DENV_1/CO/BID_V7291/1998,DENV_1/CO/BID_V7292/2005,DENV_1/CO/BID_V7290/1998,DENV_1/PR/BID_V7719/2012,DENV_1/PR/BID_V8184/2010,DENV_1/PR/BID_V7708/2012"]
["Edgerton et al",13,"Evolution and epidemiologic dynamics of dengue virus in Nicaragua during the emergence of chikungunya and Zika viruses","Infect Genet Evol, 104680 (2020) In press","https://www.ncbi.nlm.nih.gov/pubmed/33326875","D2/NI/8595_12B1/2016,D2/NI/5592_11A1/2015,D2/NI/1950_1d/2015,D2/NI/1568_1E/2013,D2/NI/2578_10a/2013,D2/NI/454_12A1/2015,D3/NI/1587_1E/2013,D3/NI/336_11A1/2014,D1/NI/1735_1E/2014,D1/NI/1580_1E/2013,D1/NI/1575_1E/2013,D1/NI/1527_1E/2013,D1/NI/1572_1E/2013"]
["Vazquez-Pichardo et al A",3,"Dengue virus serotype 1 and 2, complete genome Mexico","Unpublished","unknown","3281/DENV2,3848/DENV2,3818/DENV1"]
["Santiago et al A",4,"Direct Submission","Submitted (27-AUG-2021) Dengue Branch, Centers for Disease Control and Prevention, 1324 Canada Street, San Juan, PR 00920, Puerto Rico","unknown","US/DB275/2020,US/DB279/2020,US/DB277/2020,US/DB274/2020"]
["Wong-Arambula et al B",1,"Direct Submission","Submitted (03-FEB-2022) InDRE, Secretaria de Salud, Francisco de P. Miranda 177 bis Lomas de Plateros, Mexico, Mexico 01480, Mexico","unknown","V362"]
["Islam et al A",1,"Complete nucleotide sequence of dengue virus type 3 isolates of Indonesia adapted in Vero cells","Unpublished","unknown","mutant_InJ_I6_82"]
["Islam et al B",1,"Complete nucleotide sequence of dengue virus type 3 isolates of Indonesia","Unpublished","unknown","InJ_16_82"]
["King et al",8,"Comparative analysis of full genomic sequences among different genotypes of dengue virus type 3","Virol. J. 5, 63 (2008)","https://www.ncbi.nlm.nih.gov/pubmed/18495043","95TW466,98TW390,98TW358,98TW434,98TW407,98TW349,98TW360,99TW628"]
["Ritchie et al",2,"An Explosive Epidemic of DENV-3 in Cairns, Australia","PLoS ONE 8 (7), E68137 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/23874522","Cairns_2008,Cairns_98"]
["Shirin et al",5,"Analysis and identification of genomic and immunogenic features of Dengue serotype 3 isolates obtained during the 2019 outbreak in Bangladesh","Unpublished","unknown","IN068,IBCHK003,IBCHK001,IN005,IN003"]
["Sarkar et al",1,"Direct Submission","Submitted (09-SEP-2021) BCSIR, Dhaka, Bangladesh, Genomic Research Lab, BCSIR, Dr. Qudrat-I-Khuda Road, Dhaka 1205, Bangladesh","unknown","BCSIR_05"]
["Hapuarachchi et al C",1,"Dengue virus diversity in Singapore","Unpublished","unknown","SG_EHI_D3/23167Y15"]
["Abeygoonawardena et al B",1,"Direct Submission","Submitted (25-OCT-2021) Bio Medical Laboratory-02, Faculty of Medicine, General Sir John Kotelawala Defence University, Kadawala Estate, Ratmalana, Western 10390, Sri Lanka","unknown","F_124"]
["Hu et al A",4,"Molecular characteristics of the full-length genome of dengue serotype 3 virus strains isolated from dengue fever cases in southwestern border region of Yunnan province, China","Unpublished","unknown","16DGR45,16DGR58,MN1302,JH250"]
["Blaney et al B",1,"Genetically modified, live attenuated dengue virus type 3 vaccine candidates","Am. J. Trop. Med. Hyg. 71 (6), 811-821 (2004)","https://www.ncbi.nlm.nih.gov/pubmed/15642976","Sleman/78"]
["Roche et al",8,"Dengue-3 virus genomic differences that correlate with in vitro phenotype on a human cell line but not with disease severity","Microbes Infect. 9 (1), 63-69 (2007)","https://www.ncbi.nlm.nih.gov/pubmed/17196421","PF90/3050,PF89/27643,PF90/3056,PF90/6056,PF89/320219,PF92/4190,PF92/2956,PF94/136116"]
["Rutvisuttinunt et al",1,"A practical approach for molecular epidemiological studies: assortment of viral pathogens in simulated isolate admixture","Unpublished","unknown","VIROAF7"]
["Costa et al",1,"Direct Submission","Submitted (16-SEP-2011) Microbiology, Universidade Federal de Minas Gerais, Antonio Carlos Avenue 6627, Belo Horizonte, Minas Gerais 31270-090, Brazil","unknown","DENV3/BR/D3LIMHO/2006"]
["Osatomi et al",1,"Complete nucleotide sequence of dengue type 3 virus genome RNA","Virology 176 (2), 643-647 (1990)","https://www.ncbi.nlm.nih.gov/pubmed/2345967","H87"]
["Attatippaholkun et al",1,"Complete nucleotide sequence of Thai dengue-3 virus, Bangkok isolate CH53489","Unpublished","unknown","CH53489"]
["Zody et al C",9,"Direct Submission","Submitted (03-DEC-2013) Broad Institute of MIT & Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA","unknown","DENV_3/LK/BID_V2415/1983,DENV_3/IN/BID_V2417/1984,DENV_3/LK/BID_V2408/1994,DENV_3/LK/BID_V2404/1989,DENV_3/PR/BID_V1728/2006,DENV_3/VE/BID_V2236/2004,DENV_3/BR/BID_V3642/2008,DENV_3/BR/BID_V3612/2007,DENV_1/PR/BID_V1056/1995"]
["Zhang et al E",10,"Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence","J. Virol. 79 (24), 15123-15130 (2005)","https://www.ncbi.nlm.nih.gov/pubmed/16306584","ThD3_0010_87,ThD3_0007_87,ThD3_0104_93,ThD3_0055_93,ThD1_0442_80,ThD1_0673_80,ThD1_0081_82,ThD1_0008_81,ThD1_0323_91,ThD1_0336_91"]
["Sarathy et al",1,"A lethal murine infection model for dengue virus 3 in immunocompromised mice leads to systemic disease","Unpublished","unknown","D83_144"]
["Islam et al C",2,"Complete nucleotide sequence of dengue virus type 3 isolates of Bangladesh adapted in Vero cells","Unpublished","unknown","mutant_BDH02_04,mutant_BDH02_07"]
["Islam et al D",3,"Molecular Characterization and Clinical Evaluation of Dengue Outbreak in Year 2002 in Bangladesh","Jpn. J. Infect. Dis. (2006) In press","unknown","BDH02_7,BDH02_3,BDH02_4"]
["Islam et al E",1,"Molecular characterization and clinical evaluation of dengue outbreak in 2002 in Bangladesh","Jpn. J. Infect. Dis. 59 (2), 85-91 (2006)","https://www.ncbi.nlm.nih.gov/pubmed/16632907","BDH02_1"]
["Touret et al",1,"Extended dengue virus panel for antiviral coumpound studies","Unpublished","unknown","CNR_15418"]
["Ma et al A",4,"Molecular characterization of the complete genome sequences of dengue virus type 3 newly isolated in Henan, China, 2013","Unpublished","unknown","HN/2013/11,HN/2013/20,HN/2013/110,HN/2013/107"]
["Raekiansyah et al",1,"Genetic variations and relationship among dengue virus type 3 strains isolated from patients with mild or severe form of dengue disease in Indonesia and Thailand","Southeast Asian J. Trop. Med. Public Health 36 (5), 1187-1197 (2005)","https://www.ncbi.nlm.nih.gov/pubmed/16438144","C0331/94"]
["Wo et al",1,"Full genome sequence of Dengue virus 3 isolated in Zhejiang Province, China","Unpublished","unknown","DTID_ZJU04"]
["Bai et al C",1,"Complete Genome Sequence of Dengue Virus Serotype 3 from Guangzhou, China","Genome Announc 1 (2), E00208-E00212 (2013)","unknown","GZ/10476/2012"]
["Abubakar et al",1,"Direct Submission","Submitted (17-APR-2018) Tropical Infectious Diseases Research and Education Centre, University of Malaya, Department of Medical Microbiology, Faculty of Medicine, 50603 Kuala Lumpur, Malaysia","unknown","V59538"]
["Schreiber et al",6,"Genomic epidemiology of a dengue virus epidemic in urban Singapore","J. Virol. 83 (9), 4163-4173 (2009)","https://www.ncbi.nlm.nih.gov/pubmed/19211734","D3/SG/05K4168DK1/2005,D3/SG/05K2899DK1/2005,D3/SG/05K4648DK1/2005,D1/SG/05K4154DK1/2005,D1/SG/05K3935DK1/2005,D1/SG/05K872DK1/2005"]
["Messer et al",1,"Development and characterization of a reverse genetic system for studying dengue virus serotype 3 strain variation and neutralization","PLoS Negl Trop Dis 6 (2), E1486 (2012)","https://www.ncbi.nlm.nih.gov/pubmed/22389731","UNC3001"]
["Sharma et al",1,"Comparative complete genome analysis of dengue virus type 3 circulating in India between 2003 and 2008","J. Gen. Virol. 92 (PT 7), 1595-1600 (2011)","https://www.ncbi.nlm.nih.gov/pubmed/21411675","ND143"]
["Angel et al",2,"Complete Genome Sequence of Dengue Virus 3 from Rajasthan, India","Unpublished","unknown","RajasthanIndia/DMRC/Balotra87/2013,RajasthanIndia/Balotra_87_s/2013"]
["Kimita et al B",4,"Dengue fever outbreak at the Kenyan south coast involving serotype 3, genotypes III and V","Unpublished","unknown","Kenya/MTW_341/2019,Kenya/MTW_359/2019,Kenya/MTW_4167/2019,Kenya/MTW_355/2019"]
["Gaye et al",2,"Genomic investigation of a dengue virus outbreak in Thies, Senegal, in 2018","Unpublished","unknown","SHC0411_/_DENV_3_/_2018,SHC0513_/_DENV_1_/_2018"]
["Yu et al B",1,"Dengue virus serotype 3 infection: a family cluster in Guangzhou, China","Unpublished","unknown","GZ2D3"]
["Zhang et al F",1,"Complete genome of Dengue virus type 3","Unpublished","unknown","GZ1D3"]
["Gu et al",1,"Genomic analysis and study on E protein immunogenicity of dengue virus type 3 isolated from Yiwu, China","Unpublished","unknown","ZJYW2009"]
["Abe et al",3,"Re-emergence of dengue virus serotype-3 infections in Gabon in 2016-2017, and evidence for the risk of repeated dengue virus infections","Int. J. Infect. Dis. (2019) In press","https://www.ncbi.nlm.nih.gov/pubmed/31821892","SYMAV_03/Gabon/2016,SYMAV_07/Gabon/2016,SYMAV_09/Gabon/2016"]
["Pattabiraman et al D",1,"Complete assembly of a dengue virus type 3 genome from an#emerging genotype III clade by metagenomic sequencing of serum","Unpublished","unknown","I/B/DENV3/2014"]
["Shi et al",1,"Molecular epidemiology of Dengue virus 3 epidemic in Zhongshan City in 2013","Unpublished","unknown","13GDZDVS30E"]
["Su et al D",2,"Rapid spreading of Dengue Virus 3 in a South-China City, Guanghzou, 2019","Unpublished","unknown","19XN50516,19XN16187"]
["Henn et al AF",3,"Direct Submission","Submitted (10-SEP-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/US/BID_V1731/2003,DENV_3/US/BID_V1733/1999,DENV_1/US/BID_V1744/1995"]
["Henn et al AG",3,"Direct Submission","Submitted (03-SEP-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/US/BID_V1622/2005,DENV_1/VN/BID_V1639/2007,DENV_1/VN/BID_V1632/2006"]
["Henn et al AH",2,"Direct Submission","Submitted (02-SEP-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/US/BID_V1450/1998,DENV_3/US/BID_V1616/2004"]
["Henn et al AI",1,"Direct Submission","Submitted (30-MAY-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/US/BID_V1452/1999"]
["Henn et al AJ",14,"Direct Submission","Submitted (22-OCT-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/US/BID_V2105/2000,DENV_3/US/BID_V2120/2002,DENV_1/US/BID_V2139/1996,DENV_1/US/BID_V2136/1992,DENV_1/US/BID_V2133/1993,DENV_1/US/BID_V2132/1993,DENV_1/US/BID_V2143/1987,DENV_1/US/BID_V2134/1993,DENV_1/US/BID_V2128/1995,DENV_1/US/BID_V2094/1995,DENV_1/US/BID_V2137/1992,DENV_1/VN/BID_V1968/2008,DENV_1/VN/BID_V1961/2008,DENV_1/VN/BID_V1967/2008"]
["Laiton Donato et al",2,"Whole Genome Sequences of Dengue virus type 3 strains isolated from the serum of patients in Colombia 2015 - 2016","Unpublished","unknown","449686_Antioquia_CO_2015,476947_Risaralda_CO_2016"]
["Peyrefitte et al",1,"Genetic Characterization of Newly Reintroduced Dengue Virus Type 3 in Martinique (French West Indies)","J. Clin. Microbiol. 41 (11), 5195-5198 (2003)","https://www.ncbi.nlm.nih.gov/pubmed/14605161","D3/H/IMTSSA_MART/1999/1243"]
["Alfonso et al",6,"Molecular characterization of dengue virus type 3 isolated in Brazil and Paraguay","Unpublished","unknown","D3BR/BV4/02,D3PY/AS10/03,D3BR/MR9/03,D3BR/AL95/2009,D3BR/ACN/2007,D3BR/SL3/02"]
["Silva et al B",4,"Molecular characterization of dengue virus circulating in Pernambuco - Brazil:epidemiological implications","Unpublished","unknown","249/BR_PE/05,145/BR_PE/04,420/BR_PE/06,101905/BR_PE/03"]
["Duarte dos Santos et al",2,"Complete genome sequence of Dengue virus type 3","Unpublished","unknown","BR_DEN3_95_04,BR_DEN3_97_04"]
["Castro et al",1,"Dengue virus type 3 strain BRmosq73354/01, complete genome, isolated from naturally infected mosquitoes","Unpublished","unknown","BR73354mosq/01"]
["Goncalves et al",1,"Genomic characterization of a Dengue virus type 3 isolate from a dengue fever patient","Unpublished","unknown","D3BR/RP1/2003"]
["Rodriguez-Roche et al D",7,"Increasing Clinical Severity during a Dengue Virus Type 3 Cuban Epidemic: Deep Sequencing of Evolving Viral Populations","J. Virol. 90 (9), 4320-4333 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/26889031","Cuba_17_2002,Cuba_553_2001,Cuba_557_2001,Cuba_463_2001,Cuba_16_2002,Cuba_21_2002,Cuba_20_2002"]
["Zody et al D",13,"Direct Submission","Submitted (17-DEC-2013) Broad Institute of MIT & Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA","unknown","DENV_3/NI/BID_V7634/2011,DENV_3/NI/BID_V7674/2011,DENV_3/NI/BID_V7658/2012,DENV_3/NI/BID_V7668/2011,DENV_3/NI/BID_V7637/2011,DENV_1/NI/BID_V7696/2012,DENV_1/NI/BID_V7681/2012,DENV_1/NI/BID_V7690/2012,DENV_1/NI/BID_V7655/2012,DENV_1/NI/BID_V7659/2011,DENV_1/NI/BID_V7675/2011,DENV_1/NI/BID_V7654/2012,DENV_1/NI/BID_V7686/2012"]
["Henn et al AK",1,"Direct Submission","Submitted (28-OCT-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/NI/BID_V3175/2008"]
["Newman et al",2,"Direct Submission","Submitted (16-DEC-2013) Broad Institute of MIT & Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA","unknown","DENV_3/NI/BID_V4835/2009,DENV_3/NI/BID_V5079/2009"]
["Henn et al AL",1,"Direct Submission","Submitted (19-JUL-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/NI/BID_V4743/2009"]
["Henn et al AM",4,"Direct Submission","Submitted (06-MAY-2011) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/NI/BID_V5685/2010,DENV_3/NI/BID_V5499/2010,DENV_3/NI/BID_V5511/2010,DENV_3/NI/BID_V5508/2010"]
["Henn et al AN",2,"Direct Submission","Submitted (09-JUL-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/NI/BID_V4752/2009,DENV_3/NI/BID_V4759/2009"]
["Henn et al AO",1,"Direct Submission","Submitted (04-NOV-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/NI/BID_V4753/2009"]
["Vazquez-Pichardo et al B",3,"DENV3 Complete Genome","Unpublished","unknown","vero_3,vero_1,vero_2"]
["Henn et al AP",2,"Direct Submission","Submitted (29-APR-2011) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/NI/BID_V5467/2010,DENV_3/NI/BID_V5482/2010"]
["Zody et al E",4,"Direct Submission","Submitted (02-DEC-2013) Broad Institute of MIT & Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA","unknown","DENV_3/NI/BID_V5479/2010,DENV_3/NI/BID_V5472/2010,DENV_3/NI/BID_V5475/2010,DENV_1/PR/BID_V2141/1996"]
["Henn et al AQ",2,"Direct Submission","Submitted (06-DEC-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_3/NI/BID_V4866/2009,DENV_3/NI/BID_V4862/2009"]
["Vasilakis et al B",1,"Evolutionary Processes among Sylvatic Dengue Type 2 Viruses","J. Virol. 81 (17), 9591-9595 (2007)","https://www.ncbi.nlm.nih.gov/pubmed/17553878","P72_1244"]
["Ushijima et al",1,"Re-emergence of DENV1, CHIKV and ZIKV first time in over a decade in Gabon, 2021","Unpublished","unknown","SYMAV_H0983"]
["Fontaine et al",3,"Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics","PLoS Pathog. 14 (7), e1007187 (2018)","https://www.ncbi.nlm.nih.gov/pubmed/30005085","Gabon2012,Ncal2013,Thai2013"]
["Sessions et al",1,"Exploring the origin and potential for spread of the 2013 dengue outbreak in Luanda, Angola","Glob Health Action 6, 21822 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/23911088","Angola_2013"]
["Thu et al",2,"Genome analysis of Dengue 1 strains from humans and mosquitoes in Myanmar","Unpublished","unknown","D1Myanmar40568/76,D1Myanmar40553/71"]
["Go et al",3,"Complete Genome Sequences of Three Clinical Isolates of Dengue Virus Serotype 1 from South Korean Travelers","Genome Announc 3 (6), e01388-15 (2015)","https://www.ncbi.nlm.nih.gov/pubmed/26607895","DenKor_01,DenKor_07,DenKor_02"]
["Vaddadi et al C",1,"Molecular characterization of Dengue virus strains in southern India","Unpublished","unknown","UOH_21749"]
["Vaddadi et al D",1,"Molecular characterization of Dengue virus serotypes in southern India","Unpublished","unknown","V3083"]
["Schuffenecker et al",5,"Dengue fever, Reunion and the Seychelles islands, 2003-2004","Unpublished","unknown","Comoros_04329/93,Reunion_191/04,Seychelles_1480_04,Reunion_257/04,Reunion_185/04"]
["Lo et al",1,"Envelope gene sequences of Dengue viruses in Singapore","Unpublished","unknown","SG_EHI_D1/09106Y11"]
["Anoop et al",4,"Complete genome sequencing and evolutionary analysis of dengue virus serotype 1 isolates from an outbreak in Kerala, South India","Virus Genes 45 (1), 1-13 (2012)","https://www.ncbi.nlm.nih.gov/pubmed/22729802","RGCB419,RGCB592,RGCB585,RGCB294"]
["Jagtap et al D",2,"Genomes of dengue viruses circulating in Mumbai, India","Unpublished","unknown","FT_MD_106_R4_DENV1D_III_India,FT_MD_112_R4_DENV1D_III_India"]
["Koo et al C",10,"Highly Selective Transmission Success of Dengue Virus Type 1 Lineages in a Dynamic Virus Population: An Evolutionary and Fitness Perspective","iScience 6, 38-51 (2018)","unknown","V50458,V6038,V5044,V44137,V42373,V25333,V11777,V48555,V13160,V8826"]
["Yadav et al C",1,"Direct Submission","Submitted (14-FEB-2022) Maximum Containment Laboratory, National Institute of Virology, Pashan, Pune, Maharashtra 411021, India","unknown","MCL_21_H_11388_RNA_8504"]
["Medigeshi et al",1,"Translational Research Consortium for Establishing Platform Technologies to Support Prophylactic and Therapeutic Strategies for Dengue","Unpublished","unknown","ICIDR92"]
["Dash et al C",1,"Direct Submission","Submitted (21-FEB-2012) Virology Division, Defence Research & Development Establishment, Jhansi Road, Gwalior, MP 474002, India","unknown","RR121"]
["Neeraja et al",1,"Investigation of acute dengue infection in southern India employing dengue NS1 specific serological and molecular assays","Int J Recent Sci Res 4 (12), 2001-2008 (2013)","unknown","RR107"]
["Shihada et al B",2,"Genetic Diversity and New Lineages of Dengue Virus Serotypes 3 and 4 in Returning Travelers, Germany, 2006-2015","Emerging Infect. Dis. 23 (2), 272-275 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/28098525","DENV1_16687,DENV1_2522"]
["Abeygoonawardena et al C",1,"Direct Submission","Submitted (20-NOV-2021) Bio Medical Laboratory-02, Faculty of Medicine, General Sir John Kotelawala Defence University, Kadawala Estate, Ratmalana, Western 10390, Sri Lanka","unknown","F_095"]
["Lee et al B",1,"Dengue virus surveillance in Singapore reveals high viral diversity through multiple introductions and in situ evolution","Infect. Genet. Evol. 12 (1), 77-85 (2012)","https://www.ncbi.nlm.nih.gov/pubmed/22036707","SG_EHI_D1/0091Y09"]
["Prat et al B",3,"Direct Submission","Submitted (06-NOV-2019) UMR190-Unite des virus emergents, UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Mediterranee Infection, 19-21 bd Jean Moulin, Marseille, Bouches du Rhone 13005, France","unknown","2012/PO/CNR_17049,2012/SA/CNR_14933,2012/SO/CNR_14126"]
["Suzuki et al",1,"Genotype analysis of dengue virus circulating in Dhaka, Bangladesh 2017 : Emergence of new genotypes","Unpublished","unknown","B17_1547"]
["Su et al E",2,"The genetic characteristics and diversity of dengue virus in Guangzhou, China, From 2019 to 2022","Unpublished","unknown","19XN50687_D1_PAK,19XN28258_D1_MMR"]
["Fourie et al B",4,"Dengue virus serotype 1 imported to France from Western, Central and Northern Africa from 2013 to 2019 and their molecular characterization","Unpublished","unknown","2015/MR/CNR30078,2019/CI/CNR51782,2019/CI/CNR50802,2019/CI/CNR51766"]
["Fourie et al C",1,"First report of a dengue virus serotype 1 infection in a traveler returning from Benin, 2019","Unpublished","unknown","2019/BJ/9943"]
["Hapuarachchi et al D",3,"Intra-epidemic evolutionary dynamics of a Dengue virus type 1 population reveal mutant spectra that correlate with disease transmission","Sci Rep 6, 22592 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/26940650","SGEHI_D1_03120Y13,SGEHI_D1_17497Y13,SGEHI_D1_09119Y13"]
["Zhao et al F",1,"Complete genome sequencing of dengue virus isolate in Guangzhou, China","Unpublished","unknown","GZ8_9/S/Yuexiu/2014/DEV1"]
["Li et al",1,"Direct Submission","Submitted (17-JUN-2015) Department of Microbiology, Zhongshan School of Medicine, Sun Yat-Sen University, Key Laboratory of Tropical Disease Control, Ministry of Education, W1334, Science & Technology Building, 74 Zhongshan Road Ii, Guangzhou, Guangdong 510080, China","unknown","DENV1/CN/GZDF780/2014"]
["Du et al A",1,"Direct Submission","Submitted (21-JAN-2015) Institute for Infectious Disease Control and Prevention, Henan Provincial Centers for Disease Control and Prevention, 105 East Agricultural Road, Zheng Dong New District, Zhengzhou, Henan 450016, China","unknown","ww2014"]
["Bai et al D",5,"Direct Submission","Submitted (25-SEP-2015) Department of Virology & Immunology, Guangzhou Center for Diseases Control and Prevention, 1 Qide Road, Baiyun District, Guangzhou, Guangdong 510440, China","unknown","GZ/33206/D1/2014,GZ/5700/D1/2007,GZ/8513/D1/2011,GZ/6553/D1/2006,GZ/6519/D1/2007"]
["Chen et al B",1,"Direct Submission","Submitted (19-OCT-2021) biological safety section, Center for Disease Prevention and Control of the Southern Theatre Command of the PLA, dongguanzhuang road, guangzhou, guangdong 510507, China","unknown","guangzhou2014_1"]
["Zhao et al G",9,"Direct Submission","Submitted (30-DEC-2019) Institute of infectious disease, Guangzhou Eighth People's Hospital, 627 East Dongfeng Road, Guangzhou, Guangdong 510060, China","unknown","GZ8H/2019030/2014/I,GZ8H/2019015/2014/I,GZ8H/2019023/2014/I,GZ8H/2019035/2014/I,GZ8H/2019060/2013/I,GZ8H/2019108/2013/I,GZ8H/2019021/2014/I,GZ8H/2019103/2017/I,GZ8H/2019105/2017/I"]
["Dash et al D",1,"Direct Submission","Submitted (24-JUN-2013) Virology Division, Defence Research & Development Establishment, Jhansi Road, Gwalior, MP 474002, India","unknown","P23086"]
["Nogueira et al",3,"Twenty-five years of DENV-1 in Brazil: virological and molecular surveillance of strains isolated between 1986 and 2011","Unpublished","unknown","242/2010/BR/RJ/2010,38159/BR/RJ/1989,36034/BR/RJ/1988"]
["Ricas Rezende et al",1,"First report of Aedes albopictus infected by Dengue and Zika virus in a rural outbreak in Brazil","PLoS ONE 15 (3), e0229847 (2020)","https://www.ncbi.nlm.nih.gov/pubmed/32163449","ESDA19"]
["Henn et al AR",2,"Direct Submission","Submitted (18-NOV-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_1/US/BID_V2138/1996,DENV_1/US/BID_V2142/1987"]
["Henn et al AS",2,"Direct Submission","Submitted (16-DEC-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_1/US/BID_V2096/1993,DENV_1/US/BID_V2097/1986"]
["Silva et al C",5,"Molecular characterization of dengue virus circulating in Pernambuco - Brazil: epidemiological implications","Unpublished","unknown","41111/BR_PE/97,52082/BR_PE/98,88463/BR_PE/02,21814/BR_PE/96,40604/BR_PE/97"]
["Henn et al AT",3,"Direct Submission","Submitted (30-SEP-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_1/VE/BID_V3545/1998,DENV_1/VE/BID_V3541/1997,DENV_1/VE/BID_V3540/1997"]
["Palermo et al",1,"Characterization of a Dengue virus serotype 1 isolated from a patient in Ciudad Juarez, Mexico","Unpublished","unknown","Ciudad_Juarez"]
["Gonzalez-Duran et al",2,"Genotypic variability analysis of DENV-1 in Mexico reveals the presence of a novel Mexican lineage","Arch. Virol. 163 (6), 1643-1647 (2018)","https://www.ncbi.nlm.nih.gov/pubmed/29426993","DENV_1/MX/InDRE_36C/2014,DENV_1/MX/InDRE_33B/2014"]
["Metsky et al",1,"Zika virus evolution and spread in the Americas","Nature 546 (7658), 411-415 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/28538734","BLM/2016/MA_WGS16_006"]
["Espejo et al",2,"Direct Submission","Submitted (30-MAR-2022) Virology and Emerging Infection Diseases, US Naval Medical Research Unit 6, Av. Venezuela, Bellavista, Callao 07006, Peru","unknown","FPP04336/PIU_PER/2021,FPJ01584/JUN_PER/2021"]
["Ortega-Lopez et al",1,"Ecology and distribution of Aedes aegypti in two hotspots of arboviral transmission in Ecuador","Unpublished","unknown","EC0426_1/seq/01"]
["Berry et al B",1,"Arboviral vulnerabilities of Ecuador: Chikungunya origins and novel dengue introductions following increase in migration from Venezuela and Colombia","Unpublished","unknown","D1_Ecuador_00274_P_12909_2015_06_10"]
["Ribeiro et al",4,"Molecular Epidemiological Context of 15 Dengue Virus Serotype 1 Genotype V Genomes from the Brazilian State of Amapa, 2014-2015","Unpublished","unknown","DENV_1/AP/BR/514A,DENV_1/AP/BR/503,DENV_1/AP/BR/338,DENV_1/AP/BR/133"]
["Caro et al",1,"Direct Submission","Submitted (14-NOV-2017) Cellule d'Intervention Biologique d'Urgence (Cibu), Institut Pasteur, 25-28 rue du Docteur Roux, Paris, Ile de France 75015, France","unknown","2010_1806"]
["Elbadry et al",1,"Complete Genomic Sequence of Dengue virus 1, Isolated from Plasma Collected from a Haitian Child in 2014","Genome Announc 5 (22), e00331-17 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/28572304","Haiti/1207/2014"]
["Santiago et al B",3,"Direct Submission","Submitted (25-FEB-2022) Dengue Branch, Centers for Disease Control and Prevention, 1324 Canada Street, San Juan, PR 00920, Puerto Rico","unknown","US/DB287/2020,US/DB288/2020,US/DB289/2020"]
["Leparc-Goffart et al",2,"DENV-1_Florida_2020","Unpublished","unknown","V54962,V54960"]
["Tittarelli et al",8,"Dengue virus 1 in Buenos Aires from 1999 to 2010: towards local spread","PLoS ONE 9 (10), E111017 (2014)","https://www.ncbi.nlm.nih.gov/pubmed/25343372","HNRG13708,HNRG13707,HNRG12589,HNRG14043,HNRG14635,HNRG13301,HNRG13561,HNRG14194"]
["Wallau et al",5,"Genomic epidemiology reveals the resurgence of dengue virus post Zika in Brazil","Unpublished","unknown","V954,V1387,V854,V639,V640"]
["Sacchi et al B",1,"Diversity of DENV-1 in Sao Paulo, Brazil","Unpublished","unknown","NS9291"]
["Huang et al",1,"Chimeric dengue type 2 (vaccine strain PDK-53)/dengue type 1 virus as a potential candidate dengue type 1 virus vaccine","J. Virol. 74 (7), 3020-3028 (2000)","https://www.ncbi.nlm.nih.gov/pubmed/10708416","V16007"]
["Yang et al B",2,"Molecular epidemiology of dengue viruses in Taiwan","Unpublished","unknown","D1/Taiwan/900PT0407a,D1/Taiwan/709TN0706a"]
["Wang et al",1,"Imported dengue virus type 1 separation of Jiangsu province","Unpublished","unknown","Su1"]
["Nukui et al",1,"Novel dengue virus type 1 from travelers to Yap State, Micronesia","Emerging Infect. Dis. 12 (2), 343-346 (2006)","https://www.ncbi.nlm.nih.gov/pubmed/16494770","D1/hu/Yap/NIID27/2004"]
["Pyke et al E",2,"Direct Submission","Submitted (17-SEP-2018) Public Health Virology, Queensland Health Forensic and Scientific Services, 39 Kessels Road, Coopers Plains, QLD 4108, Australia","unknown","PNG_2015c,PNG_2016"]
["Chen et al C",1,"Identification of a recombinant dengue virus type 1 with 3 recombination regions in natural populations in Guangdong province, China","Arch. Virol. 153 (6), 1175-1179 (2008)","https://www.ncbi.nlm.nih.gov/pubmed/18446424","GZ01/95"]
["Imrie et al",2,"Homology of complete genome sequences for dengue virus type-1, from dengue-fever- and dengue-haemorrhagic-fever-associated epidemics in Hawaii and French Polynesia","Ann Trop Med Parasitol 104 (3), 225-235 (2010)","https://www.ncbi.nlm.nih.gov/pubmed/20507696","HawO3758,HawM2516"]
["Aubry et al C",1,"Unusual epidemiological pattern of Zika virus in a virgin soil area, the Fiji Islands","Unpublished","unknown","PF08_080108_88"]
["O'Connor et al",24,"Potential role of vector-mediated natural selection in dengue virus genotype/lineage replacements in two epidemiologically contrasted settings","Emerg Microbes Infect (2021) In press","https://www.ncbi.nlm.nih.gov/pubmed/34139961","NC_2009_01_06/006272,NC_2009_05_30/150114,NC_2010_08_08/215145,NC_2012_02_17/048306,NC_2012_04_28/118327,NC_2012_04_24/114321,NC_2012_02_17/048241,NC_2012_03_27/086286,NC_2012_04_26/116346,NC_2013_03_13/072283,NC_2013_03_12/071697,NC_2012_05_16/137269,NC_2016_04_27/118317,NC_2016_05_09/130404,NC_2016_04_11/102233,NC_2012_03_13/072394,NC_2014_08_01/213276,NC_2014_07_07/188300,NC_2014_05_14/134281,NC_2014_05_20/140400,NC_2014_02_04/035331,NC_2013_08_22/234079,NC_2014_02_17/048357,NC_2014_04_01/091273"]
["Hibberd et al",1,"Genome sequence of DENV-1/US/Hawaii/1944 reference strain","Unpublished","unknown","VR_1254"]
["Du et al B",1,"Direct Submission","Submitted (09-NOV-2015) MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, 301 Room, 6 Rongjingdongjie, Beijing 100176, China","unknown","DENV1_China_SZ_2015"]
["Lambrechts et al",6,"Dengue-1 virus clade replacement in Thailand associated with enhanced mosquito transmission","J. Virol. 86 (3), 1853-1861 (2012)","https://www.ncbi.nlm.nih.gov/pubmed/22130539","D87_116,D90_1197,KD86_035,KD90_157,KD92_080,03881/92"]
["Chu et al",4,"Spatiotemporal dynamics and epistatic interaction sites in dengue virus type 1: a comprehensive sequence-based analysis","PLoS ONE 8 (9), E74165 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/24040199","V832,V360052,NDF30,SDDF1543"]
["Azhar et al B",1,"Complete genome sequencing and phylogenetic analysis of dengue type 1 virus isolated from Jeddah, Saudi Arabia","Virol. J. 12 (1), 1 (2015)","https://www.ncbi.nlm.nih.gov/pubmed/25591713","DENV_1_Jeddah"]
["Punpapong et al",1,"Phylogenetic and recombinant analyses of complete coding sequences of DENV-1 from field-caught mosquitoes in Thailand","Virus Res. (2020) In press","https://www.ncbi.nlm.nih.gov/pubmed/32497574","DENV1/KUF35"]
["Castonguay-Vanier et al",6,"Molecular epidemiology of dengue viruses in three provinces of Lao PDR, 2006-2010","PLoS Negl Trop Dis 12 (1), e0006203 (2018)","https://www.ncbi.nlm.nih.gov/pubmed/29377886","SV437,SV68,SV86,UI15711,UI14029,SV130"]
["Zhang et al G",1,"Genomic characterization of a dengue-1 virus isolated in Fujian province, 2012","Unpublished","unknown","DF1203"]
["Chen et al D",2,"The origin of dengue viruses caused the DF outbreak in Guangdong province, China, in 2006","Infect. Genet. Evol. 11 (5), 1183-1187 (2011)","https://www.ncbi.nlm.nih.gov/pubmed/21473933","DEN1/GZ/XNC,DEN1/GZ/OY"]
["Henn et al AU",1,"Direct Submission","Submitted (30-MAR-2010) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_1/VN/BID_V3893/2008"]
["Takemura et al",2,"The 2017 Dengue virus 1 outbreak in northern Vietnam","Unpublished","unknown","11_HD_001,01_TN_040"]
["Duong et al",7,"Direct Submission","Submitted (09-JAN-2020) Dengue, Oxford University Clinical Research Unit, 764 Vo Van Kiet, W.1, Dist.5, Ho Chi Minh City 70000, Viet Nam","unknown","422_44DX3_180_P20_C3,467_44DX3_180_P10_C6,468_44DX3_185_P10_C1,394_44DX3_176_P0_C2,742_44DX3_193_P20_C4,518_44DX3_193_P10_C6,523_44DX3_197_P0_C4"]
["Zhao et al H",1,"Direct Submission","Submitted (17-NOV-2020) Institute of infectious disease, Guangzhou Eighth People's Hospital, 627 East Dongfeng Road, Guangzhou, Guangdong 510060, China","unknown","GZ8H/2019148/2019/I"]
["Bohl et al C",2,"Direct Submission","Submitted (16-SEP-2021) LMVR, Characterization of febrile disease landscape in Cambodia via metagenomic pathogen sequencing, 12735 Twinbrook Parkway 2E-32A, Rockville, MD 20852, USA","unknown","109_0236_L001_56782_reads_nh,RR031_002a_30953_reads_nh"]
["Inizan et al B",12,"Viral evolution sustains a dengue outbreak of enhanced severity","Emerg Microbes Infect 10 (1), 536-544 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/33686914","New_Caledonia_2016_AVS_NC_0471,New_Caledonia_2016_116145055,New_Caledonia_2017_AVS_NC_082,New_Caledonia_2017_AVS_NC_0691,New_Caledonia_2017_AVS_NC_0712,New_Caledonia_2017_AVS_NC_086,New_Caledonia_2017_AVS_NC_073,New_Caledonia_2017_AVS_NC_094,New_Caledonia_2017_AVS_NC_1001,New_Caledonia_2017_AVS_NC_060,New_Caledonia_2013_113011343_565,New_Caledonia_2014_114167395_6809"]
["Baronti et al D",1,"Direct Submission","Submitted (28-OCT-2019) UMR190-Unite des virus emergents, UVE: Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Mediterranee Infection, 19-21 bd Jean Moulin, Marseille, Bouches du Rhone 13005, France","unknown","2013/NC/0566"]
["Lequime et al",1,"Full-genome dengue virus sequencing in mosquito saliva shows lack of convergent positive selection during transmission by Aedes aegypti","Virus Evol 3 (2), vex031 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/29497564","PF13/190813_45"]
["Inizan et al C",2,"Molecular characterization of circulationg dengue virus strains in New Caledonia","Unpublished","unknown","NewCaledonia_2014_114035331_455_C6/36,NewCaledonia_2014_114048357_806_C6/36"]
["Dubot-Peres et al",1,"An epidemic of dengue-1 in a remote village in rural laos","PLoS Negl Trop Dis 7 (8), E2360 (2013)","https://www.ncbi.nlm.nih.gov/pubmed/23951379","LNT1128_Laos_2009"]
["Henn et al AV",1,"Direct Submission","Submitted (13-JAN-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_1/KH/BID_V2004/2006"]
["Henn et al AW",1,"Direct Submission","Submitted (29-OCT-2008) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_1/VN/BID_V1827/2007"]
["Berthet et al",1,"Resequencing microarray PathogenID v2.0 for detection and characterization of viral RNA in human blood specimens infected with Dengue, West Nile and Chikungunya Viruses","Unpublished","unknown","2008/00475"]
["Lu et al",1,"Isolation and identification of Dengue virus type 1 isolate ZJ01/2004 from Zhejiang, China","Unpublished","unknown","ZJ01/2004"]
["Xu et al",1,"An outbreak of dengue virus serotype 1 infection in Cixi, Ningbo, People's Republic of China, 2004, associated with a traveler from Thailand and high density of Aedes albopictus","Am. J. Trop. Med. Hyg. 76 (6), 1182-1188 (2007)","https://www.ncbi.nlm.nih.gov/pubmed/17556633","UNKNOWN_DQ836632"]
["Hu et al B",1,"Molecular characteristics of the full-length genome of dengue serotype 1 virus strains isolated from dengue fever cases in Sino-Myanmar border region in Yunnan province, China","Unpublished","unknown","DENV_1/China/YN/15DGR4_2015_"]
["Tissera et al A",3,"Dengue Surveillance in Colombo, Sri Lanka: emergence of a new dengue virus type 1 genotype","Unpublished","unknown","DV1_SL_2009d,DV1_SL_2009c,DV1_SL_2009b"]
["Tissera et al B",2,"New dengue virus type 1 genotype in Colombo, Sri Lanka","Emerging Infect. Dis. 17 (11), 2053-2055 (2011)","https://www.ncbi.nlm.nih.gov/pubmed/22099096","DV1_SL_2009e,DV1_SL_2010b"]
["Patil et al",1,"Introduction of new genotype of Dengue type 1 in Kerala","Unpublished","unknown","NIV_K130706770_India"]
["Punzel et al",1,"Dengue virus transmission by blood stem cell donor after travel to Sri Lanka; Germany, 2013","Emerging Infect. Dis. 20 (8), 1366-1369 (2014)","https://www.ncbi.nlm.nih.gov/pubmed/25062084","BNI_5201"]
["Ocwieja et al",1,"Phylogeography and Molecular Epidemiology of an Epidemic Strain of Dengue Virus Type 1 in Sri Lanka","Am. J. Trop. Med. Hyg. 91 (2), 225-234 (2014)","https://www.ncbi.nlm.nih.gov/pubmed/24799375","SL_2012_GS0289"]
["Murugananthan et al",1,"Direct Submission","Submitted (05-JAN-2015) Ecosystem and Public Health, University of Calgary, 3330 Hospital Drive NW, Calgary, Alberta T2N4C1, Canada","unknown","DK87"]
["Henn et al AX",1,"Direct Submission","Submitted (02-APR-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA","unknown","DENV_1/VN/BID_V2778/2007"]
["Poltep et al B",1,"Development of a Dengue Virus Serotype-Specific Non-Structural Protein 1 Capture Immunochromatography Method","Sensors (Basel) 21 (23), 7809 (2021)","https://www.ncbi.nlm.nih.gov/pubmed/34883813","Th15_DV1_TM002"]
["Tajima et al",2,"Whole Genome Sequencing-Based Molecular Epidemiologic Analysis of Autochthonous Dengue Virus Type 1 Strains Circulating in Japan in 2014","Jpn. J. Infect. Dis. 70 (1), 45-49 (2017)","https://www.ncbi.nlm.nih.gov/pubmed/27169954","D1/Hu/Shizuoka/NIID181/2014,D1/Hu/Saitama/NIID100/2014"]
["Pyke et al F",1,"Highly divergent dengue virus type 1 genotype sets a new distance record","Sci Rep 6, 22356 (2016)","https://www.ncbi.nlm.nih.gov/pubmed/26924208","TSV08"]
["Hwang et al",1,"Direct Submission","Submitted (13-MAY-2020) National Primate Research Center, Korea Research Institute of Bioscience and Biotechnology, 30 Yeongudanji-ro, Cheongju 28116, Republic of Korea","unknown","V43241"]
["Weng et al",1,"Complete genomic RNA sequence of a Dengue virus type 1 strain isolated in Fujian, China","Unpublished","unknown","Fj231/04"]
["Zhao et al I",1,"Direct Submission","Submitted (24-JUL-2016) Institute of Infectious Disease, Guangzhou Eighth People's Hospital, 627 East Dongfeng Road, Guangzhou, Guangdong 213456, China","unknown","GZ8_46/S/Haizhu/2014/DEV1"]
["Ma et al B",1,"Complete genome of Dengue virus type 1 isolated in Dongguan, China","Unpublished","unknown","DG14"]
["Sun et al B",1,"Direct Submission","Submitted (30-OCT-2019) Joint Laboratory of Molecular Epidemiology, Institute of Medical Biology, Chinese Academy of Medical Sciences, 935 Jiaoling Road, Wuhua District, Kunming, Yunnan Province 650031, China","unknown","DV111503"]
["Guan et al B",2,"Direct Submission","Submitted (13-NOV-2018) Yunnan Key Laboratory of Vaccine Research & Development on Severe Infectious Diseases, Institute of Medical Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, 935 Jiaoling Road, Xi shuang ban na, Yunnan, China","unknown","YNBN1019,YNBN1026"]
["Liu et al B",1,"Direct Submission","Submitted (31-JAN-2021) School of Tropical Medicine and Laboratory Medicine, Hainan medical University, Longhua, Haikou 571199, China","unknown","DENV5"]
["Zhao et al J",3,"Direct Submission","Submitted (23-DEC-2019) Institute of infectious disease, Guangzhou Eighth People's Hospital, 627 East Dongfeng Road, Guangzhou, Guangdong 510060, China","unknown","GZ8H/2019013/2018/I,GZ8H/2019007/2018/I,GZ8H/2019004/2018/I"]
["Chen et al E",1,"Direct Submission","Submitted (15-OCT-2021) biological safety section, Center for Disease Prevention and Control of the Southern Theatre Command of the PLA, dongguanzhuang road, guangzhou, guangdong 510507, China","unknown","guangzhou2019_2"]
["Kobayashi et al",8,"Dengue Virus Infection in Aedes albopictus during the 2014 Autochthonous Dengue Outbreak in Tokyo Metropolis, Japan","Am. J. Trop. Med. Hyg. 98 (5), 1460-1468 (2018)","https://www.ncbi.nlm.nih.gov/pubmed/29557338","YP02/Mosq/Tokyo/2014,MJ07/Mosq/Tokyo/2014,YP04/Mosq/Tokyo/2014,MJ06/Mosq/Tokyo/2014,SCP17/Mosq/Tokyo/2014,YP11/Mosq/Tokyo/2014,MJ09/Mosq/Tokyo/2014,MJ03/Mosq/Tokyo/2014"]