feature metadata value coef stderr N N.not.0 pval qval Veillonella rodentium Crypto c_Y 0.000383467 0.000146614 60 9 0.011579294 0.133805177 Roseburia intestinalis Crypto c_Y 0.000539383 0.000270464 60 25 0.051276146 0.329858918 Bacteroides xylanisolvens Crypto c_Y -0.004524157 0.002772602 60 35 0.108663489 0.479903904 Bacteroides ovatus Crypto c_Y -0.002033011 0.001257142 60 36 0.111779023 0.487763008 Streptococcus equinus Crypto c_Y 0.000273242 0.000178964 60 7 0.132756716 0.517002866 Clostridioides difficile Crypto c_Y 0.00091482 0.0006249 60 53 0.14911507 0.548267447 Veillonella parvula Crypto c_Y 0.00034421 0.00023631 60 10 0.151125001 0.548267447 Butyricimonas faecalis Crypto c_Y 0.000529148 0.000382517 60 13 0.172362896 0.604238466 Clostridium saccharolyticum Crypto c_Y 0.000175334 0.000129442 60 7 0.181311018 0.611557163 Eubacterium limosum Crypto c_Y 0.00030511 0.000224778 60 10 0.180411093 0.611557163 Bacteroides thetaiotaomicron Crypto c_Y -0.019428176 0.014474688 60 44 0.185247121 0.615685925 Bacteroides dorei Crypto c_Y -0.001878495 0.001526602 60 45 0.223940783 0.658796661 Prevotella intermedia Crypto c_Y -0.000386847 0.000331629 60 7 0.248632153 0.694356159 Intestinimonas butyriciproducens Crypto c_Y 0.000309469 0.000267672 60 29 0.252804873 0.698009916 Parabacteroides sp. CT06 Crypto c_Y -0.000226926 0.000195915 60 7 0.251939558 0.698009916 Shigella flexneri Crypto c_Y -0.001261578 0.001098492 60 39 0.255934366 0.700451948 Fusobacterium ulcerans Crypto c_Y 0.001207932 0.001151522 60 10 0.298943941 0.774029124 Lactobacillus johnsonii Crypto c_Y 0.001377022 0.001322465 60 15 0.302484456 0.775247897 Ruminococcus gnavus Crypto c_Y 0.016412202 0.016085407 60 55 0.312213471 0.785569378 Anaerobutyricum hallii Crypto c_Y 0.000638397 0.000641453 60 36 0.324143777 0.805839509 Blautia sp. SC05B48 Crypto c_Y 0.00051636 0.000528832 60 24 0.333294291 0.812404835 Paraprevotella xylaniphila Crypto c_Y -0.000156948 0.000160429 60 9 0.332367075 0.812404835 Eubacterium maltosivorans Crypto c_Y 0.000130206 0.000136871 60 10 0.345766791 0.823274494 Lachnosp.iraceae bacterium Choco86 Crypto c_Y 0.000611102 0.000652287 60 46 0.353079251 0.823274494 Roseburia hominis Crypto c_Y 0.000200181 0.000211451 60 18 0.348087278 0.823274494 Bacteroides uniformis Crypto c_Y -0.001184341 0.001275075 60 33 0.357183315 0.825422768 Clostridiales bacterium CCNA10 Crypto c_Y 0.000316686 0.000343776 60 33 0.361121651 0.825422768 Erysipelotrichaceae bacterium I46 Crypto c_Y 0.000657717 0.000713981 60 13 0.361122461 0.825422768 Shigella dysenteriae Crypto c_Y -0.000269558 0.000290287 60 22 0.357310935 0.825422768 Blautia hansenii Crypto c_Y 0.001412136 0.001579434 60 29 0.375322884 0.829945574 Erysipelotrichaceae bacterium GAM147 Crypto c_Y 0.000170918 0.000195129 60 9 0.385023679 0.831311541 Lactobacillus salivarius Crypto c_Y 0.000661898 0.000762076 60 11 0.38901117 0.831311541 Streptococcus infantarius Crypto c_Y 0.001265762 0.001484898 60 12 0.397814587 0.841478991 Bacteroides caccae Crypto c_Y -0.00080705 0.001046323 60 16 0.443942462 0.876422332 Blautia producta Crypto c_Y 0.000310907 0.000400885 60 20 0.441460889 0.876422332 Enterococcus durans Crypto c_Y 0.003352079 0.004468428 60 11 0.456469965 0.876422332 Fusobacterium varium Crypto c_Y 0.000833535 0.001110483 60 11 0.456209552 0.876422332 Shigella boydii Crypto c_Y -0.000253272 0.000331275 60 21 0.447937949 0.876422332 Bacteroides intestinalis Crypto c_Y 0.000125768 0.000168937 60 10 0.45988313 0.878537922 Sutterella megalosp.haeroides Crypto c_Y -0.000314825 0.000442956 60 9 0.480363771 0.894767143 Lachnosp.iraceae bacterium GAM79 Crypto c_Y 0.000119062 0.000170813 60 9 0.488828764 0.898760711 Lactobacillus amylovorus Crypto c_Y 0.000763079 0.001108036 60 15 0.494030327 0.898760711 Bacillus cereus Crypto c_Y -0.001031662 0.001508317 60 47 0.496966061 0.899081008 Lachnosp.iraceae bacterium Crypto c_Y 0.000463497 0.000720702 60 31 0.522919556 0.929634766 Enterococcus faecalis Crypto c_Y 0.005067223 0.007961938 60 33 0.527234804 0.934144268 Lachnoclostridium phocaeense Crypto c_Y 8.92E-05 0.000146718 60 8 0.545749805 0.951251057 Bifidobacterium catenulatum Crypto c_Y -0.000765274 0.001304056 60 22 0.559801968 0.957651317 Clostridium butyricum Crypto c_Y 0.000577525 0.000986691 60 12 0.56081998 0.957651317 Eggerthella lenta Crypto c_Y 0.000220012 0.000370957 60 17 0.555642514 0.957651317 Lachnoclostridium sp. YL32 Crypto c_Y 0.000709075 0.001224278 60 44 0.564922965 0.957651317 Clostridium botulinum Crypto c_Y 0.000133693 0.000237989 60 7 0.576647324 0.962792742 Bifidobacterium pseudocatenulatum Crypto c_Y -0.0022029 0.004009842 60 24 0.585056834 0.963622537 Bacteroides zoogleoformans Crypto c_Y -8.13E-05 0.000154899 60 8 0.601913532 0.964706593 Blautia sp. N6H1 15 Crypto c_Y 0.000462076 0.000882992 60 31 0.60294162 0.964706593 Collinsella aerofaciens Crypto c_Y -0.00730791 0.014948977 60 46 0.626959907 0.979788279 Enterococcus avium Crypto c_Y 0.002561792 0.005537528 60 14 0.645527851 0.979788279 Enterococcus faecium Crypto c_Y 0.000610518 0.001320705 60 30 0.645782002 0.979788279 Klebsiella pneumoniae Crypto c_Y 0.001510478 0.003189353 60 27 0.637730251 0.979788279 Proteus mirabilis Crypto c_Y 0.000259533 0.000524613 60 8 0.622847357 0.979788279 Clostridium perfringens Crypto c_Y 0.00522531 0.011912596 60 33 0.662707224 0.980711219 Clostridium scindens Crypto c_Y -0.000186045 0.000414495 60 37 0.655371771 0.980711219 Escherichia virus AKFV33 Crypto c_Y 0.000288417 0.000707101 60 7 0.685000146 0.982620899 Bacteroides caecimuris Crypto c_Y -0.00018962 0.000576747 60 30 0.743622052 0.989179292 Bifidobacterium breve Crypto c_Y 0.000729892 0.001973707 60 38 0.712999323 0.989179292 Enterococcus cecorum Crypto c_Y -0.003614781 0.011298357 60 40 0.75027269 0.989179292 Escherichia coli Crypto c_Y -0.015309185 0.04403097 60 60 0.729449107 0.989179292 Escherichia virus slur09 Crypto c_Y 0.000212398 0.000576748 60 7 0.714140574 0.989179292 Faecalitalea cylindroides Crypto c_Y -4.80E-05 0.000149085 60 9 0.748968923 0.989179292 Fusobacterium mortiferum Crypto c_Y -0.003207737 0.009296051 60 34 0.731411591 0.989179292 Lactococcus lactis Crypto c_Y -4.21E-05 0.000120274 60 7 0.727801518 0.989179292 Megamonas hypermegale Crypto c_Y -0.000769829 0.002024781 60 19 0.705313934 0.989179292 Salmonella virus sp.C35 Crypto c_Y 0.000165417 0.000480279 60 7 0.731894892 0.989179292 Salmonella enterica Crypto c_Y 0.000205449 0.000660213 60 26 0.756879832 0.992212217 Bacteroides salanitronis Crypto c_Y -0.000194429 0.000913933 60 19 0.832346983 0.998513561 Bifidobacterium longum Crypto c_Y 0.008516839 0.029051248 60 49 0.770540102 0.998513561 Escherichia virus DT57C Crypto c_Y 0.000133277 0.000530045 60 7 0.802442328 0.998513561 Escherichia virus FFH1 Crypto c_Y 0.000216803 0.000903939 60 7 0.811377879 0.998513561 Escherichia virus H8 Crypto c_Y 0.000128948 0.000528636 60 7 0.808229882 0.998513561 Escherichia virus T5 Crypto c_Y 0.000218745 0.000738173 60 7 0.768134078 0.998513561 Faecalibacterium prausnitzii Crypto c_Y 0.008780243 0.033746636 60 48 0.795732107 0.998513561 Flintibacter sp. KGMB00164 Crypto c_Y -0.000413006 0.001560081 60 27 0.792241221 0.998513561 Streptococcus pasteurianus Crypto c_Y -0.001413203 0.005307052 60 35 0.791050788 0.998513561 Anaerostipes hadrus Crypto c_Y 1.38E-05 0.000216132 60 8 0.949337255 0.998898139 Bacteroides cellulosilyticus Crypto c_Y -2.44E-05 0.000306556 60 13 0.936785019 0.998898139 Bacteroides fragilis Crypto c_Y 0.001565683 0.046994687 60 50 0.973547606 0.998898139 Bacteroides helcogenes Crypto c_Y 3.26E-05 0.000167844 60 9 0.846921603 0.998898139 Bacteroides heparinolyticus Crypto c_Y -3.34E-05 0.000183325 60 9 0.85612311 0.998898139 Bacteroides sp. A1C1 Crypto c_Y -5.10E-05 0.000322472 60 26 0.874875216 0.998898139 Bacteroides vulgatus Crypto c_Y 3.63E-05 0.02616492 60 43 0.998898139 0.998898139 Bifidobacterium adolescentis Crypto c_Y -6.66E-06 0.000193083 60 9 0.972603925 0.998898139 Bifidobacterium animalis Crypto c_Y 1.14E-05 0.000157038 60 8 0.942482543 0.998898139 Bifidobacterium bifidum Crypto c_Y 0.000645691 0.008849203 60 21 0.942107878 0.998898139 Christensenella minuta Crypto c_Y -1.85E-06 0.000128436 60 7 0.988582457 0.998898139 Clostridium bolteae Crypto c_Y -9.61E-05 0.000904642 60 31 0.915807316 0.998898139 Eubacterium rectale Crypto c_Y 3.61E-05 0.000210779 60 15 0.864593923 0.998898139 Flavonifractor plautii Crypto c_Y -0.000131082 0.000857448 60 25 0.879077396 0.998898139 Gallibacterium anatis Crypto c_Y 0.000439441 0.003131015 60 22 0.888914708 0.998898139 Lachnosp.iraceae bacterium KGMB03038 Crypto c_Y 1.58E-05 0.000186195 60 11 0.932615884 0.998898139 Lactobacillus reuteri Crypto c_Y 5.81E-05 0.00061319 60 14 0.924904393 0.998898139 Longibaculum sp. KGMB06250 Crypto c_Y 2.01E-05 0.000255337 60 21 0.937564519 0.998898139 Parabacteroides distasonis Crypto c_Y -2.43E-05 0.000979862 60 35 0.980313404 0.998898139 Pasteurella multocida Crypto c_Y -7.89E-05 0.000492853 60 7 0.873446488 0.998898139 Streptococcus gallolyticus Crypto c_Y -1.57E-05 0.00073878 60 18 0.983112517 0.998898139 Streptococcus thermophilus Crypto c_Y 3.88E-05 0.000434485 60 16 0.929183788 0.998898139 Flintibacter sp. KGMB00164 Diatrim Y -0.008087157 0.002822742 60 27 0.005965597 0.089688291 Enterococcus faecalis Diatrim Y -0.041049593 0.014405983 60 33 0.006223138 0.090307861 Bacteroides vulgatus Diatrim Y -0.11425965 0.04734166 60 43 0.019288438 0.18374858 Clostridium butyricum Diatrim Y -0.004159388 0.001785275 60 12 0.023656403 0.207909794 Clostridium perfringens Diatrim Y -0.041584345 0.02155413 60 33 0.059055321 0.353204104 Bifidobacterium bifidum Diatrim Y -0.029386884 0.016011361 60 21 0.072063503 0.390601972 Streptococcus infantarius Diatrim Y -0.004711087 0.002686709 60 12 0.085301564 0.428745764 Paraprevotella xylaniphila Diatrim Y 0.000451332 0.000290272 60 9 0.125931621 0.517002866 Proteus mirabilis Diatrim Y -0.001455863 0.000949212 60 8 0.131036877 0.517002866 Bifidobacterium catenulatum Diatrim Y -0.003531264 0.002359501 60 22 0.140425358 0.532016626 Bifidobacterium pseudocatenulatum Diatrim Y -0.010828634 0.007255233 60 24 0.141490143 0.532016626 Blautia sp. N6H1 15 Diatrim Y -0.002328961 0.001597647 60 31 0.150811286 0.548267447 Klebsiella pneumoniae Diatrim Y -0.008465561 0.005770676 60 27 0.148286145 0.548267447 Shigella flexneri Diatrim Y 0.002818605 0.001987563 60 39 0.162008739 0.577676875 Bacteroides fragilis Diatrim Y 0.116145245 0.085030129 60 50 0.177729265 0.610177745 Bacteroides zoogleoformans Diatrim Y 0.000370878 0.000280267 60 8 0.191415175 0.615685925 Lactobacillus reuteri Diatrim Y -0.001471574 0.00110948 60 14 0.190406611 0.615685925 Prevotella intermedia Diatrim Y 0.000783214 0.000600035 60 7 0.197435374 0.625286082 Roseburia intestinalis Diatrim Y -0.000603159 0.000489366 60 25 0.223190328 0.658796661 Lachnosp.iraceae bacterium GAM79 Diatrim Y 0.000368692 0.000309061 60 9 0.238204359 0.67563418 Bacteroides xylanisolvens Diatrim Y 0.005955465 0.005016625 60 35 0.240463863 0.678956788 Faecalibacterium prausnitzii Diatrim Y 0.06919954 0.061059687 60 48 0.262184864 0.703135211 Shigella boydii Diatrim Y 0.000658468 0.000599395 60 21 0.276928126 0.735332555 Bacteroides ovatus Diatrim Y 0.002442692 0.002274618 60 36 0.287736567 0.754401757 Bacillus cereus Diatrim Y 0.002837768 0.002729082 60 47 0.303141806 0.775247897 Shigella dysenteriae Diatrim Y 0.000548564 0.000525232 60 22 0.301030271 0.775247897 Ruminococcus gnavus Diatrim Y 0.030062319 0.029104232 60 55 0.306332162 0.780209261 Lachnosp.iraceae bacterium Diatrim Y -0.001312187 0.001304006 60 31 0.318856109 0.795864848 Erysipelotrichaceae bacterium GAM147 Diatrim Y 0.000348139 0.000353058 60 9 0.328580236 0.809550368 Bifidobacterium adolescentis Diatrim Y -0.000328828 0.000349356 60 9 0.35085248 0.823274494 Enterococcus cecorum Diatrim Y -0.019180742 0.020442752 60 40 0.352363963 0.823274494 Eubacterium limosum Diatrim Y 0.000383474 0.000406703 60 10 0.350018986 0.823274494 Lactococcus lactis Diatrim Y 0.000207228 0.000217619 60 7 0.34529153 0.823274494 Clostridiales bacterium CCNA10 Diatrim Y -0.000554663 0.000622013 60 33 0.376572598 0.829945574 Enterococcus faecium Diatrim Y 0.002113756 0.002389625 60 30 0.380391722 0.829945574 Sutterella megalosp.haeroides Diatrim Y -0.000710147 0.000801465 60 9 0.379587716 0.829945574 Bacteroides cellulosilyticus Diatrim Y 0.000485974 0.000554669 60 13 0.384900953 0.831311541 Roseburia hominis Diatrim Y -0.000324106 0.00038259 60 18 0.400728091 0.841933767 Eggerthella lenta Diatrim Y 0.000559619 0.000671194 60 17 0.408154273 0.852859004 Erysipelotrichaceae bacterium I46 Diatrim Y 0.001032823 0.001291846 60 13 0.427572774 0.863447931 Intestinimonas butyriciproducens Diatrim Y -0.000389243 0.000484314 60 29 0.425160323 0.863447931 Bacteroides caecimuris Diatrim Y 0.000798442 0.001043541 60 30 0.447589748 0.876422332 Escherichia coli Diatrim Y 0.060572865 0.079667709 60 60 0.450433203 0.876422332 Streptococcus gallolyticus Diatrim Y -0.001037547 0.001336716 60 18 0.441086329 0.876422332 Clostridium saccharolyticum Diatrim Y -0.000167513 0.000234206 60 7 0.477602875 0.892288005 Longibaculum sp. KGMB06250 Diatrim Y -0.000333308 0.000461995 60 21 0.473802121 0.892288005 Bacteroides intestinalis Diatrim Y -0.000191331 0.000305667 60 10 0.534037614 0.934144268 Bacteroides dorei Diatrim Y -0.001604543 0.002762167 60 45 0.563769968 0.957651317 Clostridium bolteae Diatrim Y 0.0009519 0.001636819 60 31 0.563332036 0.957651317 Lachnosp.iraceae bacterium KGMB03038 Diatrim Y -0.000197234 0.000336893 60 11 0.560730978 0.957651317 Parabacteroides sp. CT06 Diatrim Y 0.000193824 0.000354479 60 7 0.586821417 0.963622537 Bacteroides thetaiotaomicron Diatrim Y 0.014093549 0.026189867 60 44 0.592740207 0.964706593 Fusobacterium mortiferum Diatrim Y -0.008841445 0.016819867 60 34 0.60132054 0.964706593 Bifidobacterium animalis Diatrim Y -0.000129656 0.000284137 60 8 0.650027282 0.979788279 Eubacterium rectale Diatrim Y 0.00017774 0.000381375 60 15 0.643089865 0.979788279 Fusobacterium varium Diatrim Y 0.000916788 0.00200926 60 11 0.650051839 0.979788279 Lachnosp.iraceae bacterium Choco86 Diatrim Y 0.00055538 0.001180219 60 46 0.639875837 0.979788279 Veillonella rodentium Diatrim Y -0.00012527 0.000265276 60 9 0.638703923 0.979788279 Enterococcus durans Diatrim Y 0.003552014 0.008084979 60 11 0.662204916 0.980711219 Bacteroides heparinolyticus Diatrim Y 0.000140029 0.0003317 60 9 0.67461833 0.981263025 Bacteroides sp. A1C1 Diatrim Y -0.000246759 0.000583467 60 26 0.674065434 0.981263025 Salmonella enterica Diatrim Y 0.00050513 0.00119456 60 26 0.674109338 0.981263025 Bacteroides uniformis Diatrim Y 0.000942619 0.002307065 60 33 0.684494757 0.982620899 Megamonas hypermegale Diatrim Y -0.00150573 0.00366355 60 19 0.682727406 0.982620899 Bacteroides salanitronis Diatrim Y 0.000630525 0.001653631 60 19 0.704507075 0.989179292 Butyricimonas faecalis Diatrim Y -0.000235371 0.00069211 60 13 0.735141816 0.989179292 Clostridioides difficile Diatrim Y 0.000366714 0.001130667 60 53 0.746961903 0.989179292 Escherichia virus DT57C Diatrim Y 0.000362917 0.000959041 60 7 0.706632532 0.989179292 Escherichia virus FFH1 Diatrim Y 0.000591855 0.001635547 60 7 0.718888178 0.989179292 Escherichia virus T5 Diatrim Y 0.000455949 0.001335617 60 7 0.734169485 0.989179292 Eubacterium maltosivorans Diatrim Y -7.91E-05 0.000247648 60 10 0.750634968 0.989179292 Faecalitalea cylindroides Diatrim Y -9.78E-05 0.000269749 60 9 0.718510387 0.989179292 Fusobacterium ulcerans Diatrim Y 0.000682217 0.002083514 60 10 0.744628035 0.989179292 Lachnoclostridium sp. YL32 Diatrim Y -0.000762341 0.002215155 60 44 0.732096744 0.989179292 Anaerobutyricum hallii Diatrim Y 0.000285166 0.001160617 60 36 0.806862108 0.998513561 Anaerostipes hadrus Diatrim Y 0.000105112 0.00039106 60 8 0.789136193 0.998513561 Bacteroides caccae Diatrim Y -0.000416827 0.001893172 60 16 0.826581471 0.998513561 Bacteroides helcogenes Diatrim Y 8.42E-05 0.00030369 60 9 0.782588214 0.998513561 Bifidobacterium longum Diatrim Y -0.014791387 0.052564056 60 49 0.779501398 0.998513561 Blautia sp. SC05B48 Diatrim Y -0.000279325 0.000956846 60 24 0.771485255 0.998513561 Escherichia virus AKFV33 Diatrim Y 0.000273155 0.001279397 60 7 0.831753631 0.998513561 Escherichia virus slur09 Diatrim Y 0.00021589 0.001043542 60 7 0.83689518 0.998513561 Flavonifractor plautii Diatrim Y 0.000329287 0.001551429 60 25 0.832728152 0.998513561 Gallibacterium anatis Diatrim Y 0.001584582 0.005665122 60 22 0.780789944 0.998513561 Lactobacillus salivarius Diatrim Y 0.000358363 0.001378866 60 11 0.79595025 0.998513561 Streptococcus equinus Diatrim Y 7.69E-05 0.000323809 60 7 0.813184907 0.998513561 Bifidobacterium breve Diatrim Y 0.000159889 0.003571139 60 38 0.964456774 0.998898139 Blautia hansenii Diatrim Y -5.62E-05 0.002857759 60 29 0.984385079 0.998898139 Blautia producta Diatrim Y -2.80E-05 0.000725344 60 20 0.969316699 0.998898139 Christensenella minuta Diatrim Y -1.63E-05 0.000232386 60 7 0.944473512 0.998898139 Clostridium botulinum Diatrim Y -6.05E-05 0.000430607 60 7 0.888839558 0.998898139 Clostridium scindens Diatrim Y 3.05E-05 0.00074997 60 37 0.967728419 0.998898139 Collinsella aerofaciens Diatrim Y 0.002403244 0.027048024 60 46 0.929535232 0.998898139 Enterococcus avium Diatrim Y 0.000652346 0.010019361 60 14 0.948332545 0.998898139 Escherichia virus H8 Diatrim Y 0.000158544 0.000956491 60 7 0.868979819 0.998898139 Lachnoclostridium phocaeense Diatrim Y 3.71E-05 0.000265465 60 8 0.889423397 0.998898139 Lactobacillus amylovorus Diatrim Y -0.000210888 0.002004832 60 15 0.916622307 0.998898139 Lactobacillus johnsonii Diatrim Y -7.14E-05 0.00239281 60 15 0.976315402 0.998898139 Parabacteroides distasonis Diatrim Y 0.000123842 0.001772919 60 35 0.944574497 0.998898139 Pasteurella multocida Diatrim Y 3.75E-06 0.000891747 60 7 0.996661561 0.998898139 Salmonella virus sp.C35 Diatrim Y 0.000158305 0.000868995 60 7 0.856143833 0.998898139 Streptococcus pasteurianus Diatrim Y -7.79E-05 0.009602347 60 35 0.993560216 0.998898139 Streptococcus thermophilus Diatrim Y -2.03E-05 0.000786139 60 16 0.979513674 0.998898139 Veillonella parvula Diatrim Y 5.25E-05 0.000427569 60 10 0.902805757 0.998898139 Bacteroides xylanisolvens Farm f1 0.042306631 0.008339961 60 35 5.14E-06 0.000400722 Bacteroides ovatus Farm f1 0.018160715 0.003781472 60 36 1.33E-05 0.000826871 Blautia sp. N6H1 15 Farm f3 -0.005163044 0.001619112 60 31 0.002398828 0.054470936 Bacteroides ovatus Farm f3 0.007233804 0.002305178 60 36 0.002776823 0.055894752 Lactobacillus amylovorus Farm f1 0.009013417 0.003332963 60 15 0.009181075 0.116301452 Enterococcus faecalis Farm f3 -0.038940466 0.014599529 60 33 0.010120664 0.123829302 Flintibacter sp. KGMB00164 Farm f3 -0.007519606 0.002860666 60 27 0.011192061 0.131770677 Clostridium perfringens Farm f3 -0.056584268 0.021843712 60 33 0.012352961 0.138795094 Streptococcus infantarius Farm f3 -0.006653069 0.002722805 60 12 0.017910661 0.1805341 Bacteroides intestinalis Farm f3 -0.000741274 0.000309774 60 10 0.020288653 0.186178225 Bacteroides xylanisolvens Farm f3 0.012060497 0.005084024 60 35 0.02134333 0.190260545 Blautia producta Farm f3 -0.001744605 0.000735089 60 20 0.021286644 0.190260545 Bacteroides fragilis Farm f3 0.191497304 0.086172518 60 50 0.03055659 0.25088569 Roseburia hominis Farm f3 -0.000821626 0.00038773 60 18 0.0387879 0.298810491 Megamonas hypermegale Farm f3 -0.007674651 0.00371277 60 19 0.043624361 0.320254136 Clostridium scindens Farm f3 -0.001559923 0.000760046 60 37 0.045082883 0.323353093 Clostridium butyricum Farm f3 -0.00361369 0.001809261 60 12 0.050934487 0.329858918 Roseburia intestinalis Farm f3 -0.000991803 0.000495941 60 25 0.050653845 0.329858918 Clostridium saccharolyticum Farm f3 -0.000467419 0.000237353 60 7 0.054156179 0.341348038 Bacteroides caecimuris Farm f1 0.003389808 0.001734851 60 30 0.055993399 0.345939413 Parabacteroides sp. CT06 Farm f3 0.000658039 0.000359242 60 7 0.072611905 0.390601972 Lachnosp.iraceae bacterium KGMB03038 Farm f3 -0.000619792 0.000341419 60 11 0.075131169 0.400699567 Bacteroides salanitronis Farm f3 -0.00302267 0.001675847 60 19 0.076968491 0.406946859 Lachnosp.iraceae bacterium Farm f3 -0.002349152 0.001321526 60 31 0.081206216 0.41878247 Blautia sp. N6H1 15 Farm f1 -0.004648352 0.002656032 60 31 0.085886571 0.428745764 Enterococcus cecorum Farm f3 -0.036359109 0.020717403 60 40 0.085037847 0.428745764 Bacteroides intestinalis Farm f1 -0.000879997 0.000508161 60 10 0.089139011 0.436967397 Clostridiales bacterium CCNA10 Farm f3 -0.001089897 0.00063037 60 33 0.089634338 0.436967397 Blautia sp. SC05B48 Farm f3 -0.00165616 0.000969701 60 24 0.093505469 0.445400099 Lactobacillus johnsonii Farm f1 0.006746597 0.003977962 60 15 0.09575435 0.452656928 Parabacteroides sp. CT06 Farm f1 0.000992608 0.000589309 60 7 0.097993741 0.45976011 Streptococcus thermophilus Farm f3 -0.001331562 0.000796701 60 16 0.10054863 0.468226458 Intestinimonas butyriciproducens Farm f3 -0.000810628 0.000490821 60 29 0.104534619 0.479629428 Enterococcus faecalis Farm f1 -0.039029393 0.023949434 60 33 0.109103598 0.479903904 Faecalitalea cylindroides Farm f3 -0.000448296 0.000273373 60 9 0.106955058 0.479903904 Flintibacter sp. KGMB00164 Farm f1 0.007645182 0.004692708 60 27 0.109208901 0.479903904 Anaerobutyricum hallii Farm f3 -0.001866693 0.00117621 60 36 0.118452076 0.506260928 Bacteroides fragilis Farm f1 0.216438298 0.141359566 60 50 0.131687566 0.517002866 Bacteroides helcogenes Farm f3 -0.000474068 0.00030777 60 9 0.129428933 0.517002866 Bacteroides thetaiotaomicron Farm f3 0.041390919 0.02654173 60 44 0.124838089 0.517002866 Bifidobacterium catenulatum Farm f3 -0.003652568 0.002391202 60 22 0.132582411 0.517002866 Bacteroides salanitronis Farm f1 -0.004177909 0.002749102 60 19 0.134521067 0.518155221 Bacteroides cellulosilyticus Farm f3 -0.000838895 0.000562121 60 13 0.141530064 0.532016626 Bifidobacterium pseudocatenulatum Farm f3 -0.010725598 0.007352708 60 24 0.150541387 0.548267447 Streptococcus infantarius Farm f1 -0.006463122 0.004466558 60 12 0.153785157 0.554693282 Bifidobacterium catenulatum Farm f1 -0.005635102 0.003922587 60 22 0.156715043 0.562012567 Clostridium butyricum Farm f1 -0.004156613 0.002967957 60 12 0.167192166 0.592772225 Eggerthella lenta Farm f1 0.001539424 0.001115836 60 17 0.173498325 0.604820977 Clostridium perfringens Farm f1 -0.047531619 0.035832974 60 33 0.190369323 0.615685925 Clostridium saccharolyticum Farm f1 -0.000517309 0.00038936 60 7 0.189667659 0.615685925 Bacteroides sp. A1C1 Farm f1 -0.001254781 0.000969994 60 26 0.201414267 0.625286082 Lachnoclostridium phocaeense Farm f3 -0.00034915 0.000269031 60 8 0.199973707 0.625286082 Lachnosp.iraceae bacterium KGMB03038 Farm f1 -0.000728134 0.000560073 60 11 0.199202731 0.625286082 Bifidobacterium pseudocatenulatum Farm f1 -0.015466065 0.012061568 60 24 0.205331816 0.628073789 Faecalitalea cylindroides Farm f1 -0.000568409 0.000448447 60 9 0.210515875 0.637679155 Flavonifractor plautii Farm f3 -0.00195076 0.001572273 60 25 0.220171128 0.657353033 Megamonas hypermegale Farm f1 -0.007564468 0.006090522 60 19 0.219702155 0.657353033 Salmonella enterica Farm f1 0.002457214 0.001985913 60 26 0.221421631 0.657938562 Eubacterium maltosivorans Farm f3 -0.000308194 0.000250975 60 10 0.224877706 0.658796661 Eubacterium maltosivorans Farm f1 -0.000500623 0.000411706 60 10 0.229383041 0.661197234 Lactobacillus amylovorus Farm f3 0.002467608 0.002031768 60 15 0.229935577 0.661197234 Pasteurella multocida Farm f3 0.001099557 0.000903728 60 7 0.229112692 0.661197234 Bacteroides helcogenes Farm f1 -0.00060812 0.000504874 60 9 0.233747975 0.669076772 Bacteroides cellulosilyticus Farm f1 -0.001085723 0.000922117 60 13 0.24428646 0.686643023 Enterococcus cecorum Farm f1 -0.039162573 0.033985349 60 40 0.254353894 0.699193084 Anaerostipes hadrus Farm f3 -0.000453322 0.000396314 60 8 0.25782737 0.702551437 Bacteroides heparinolyticus Farm f3 -0.000380675 0.000336156 60 9 0.262548885 0.703135211 Butyricimonas faecalis Farm f1 -0.00130598 0.001150608 60 13 0.261467918 0.703135211 Bifidobacterium adolescentis Farm f1 -0.000645241 0.000580792 60 9 0.271596982 0.72425862 Blautia sp. SC05B48 Farm f1 -0.001726521 0.001590723 60 24 0.282670388 0.744246086 Bacteroides heparinolyticus Farm f1 -0.000590286 0.00055144 60 9 0.289269443 0.755247416 Streptococcus thermophilus Farm f1 -0.001286172 0.001306928 60 16 0.329528515 0.809550368 Gallibacterium anatis Farm f3 0.005553323 0.005741233 60 22 0.337802333 0.820189323 Bacteroides vulgatus Farm f3 -0.04490081 0.0479777 60 43 0.35358584 0.823274494 Bifidobacterium adolescentis Farm f3 -0.00033407 0.00035405 60 9 0.349672379 0.823274494 Parabacteroides distasonis Farm f3 -0.001656955 0.001796738 60 35 0.360602589 0.825422768 Blautia hansenii Farm f3 -0.002608406 0.002896153 60 29 0.37185139 0.829945574 Lactobacillus reuteri Farm f1 -0.001670276 0.00184447 60 14 0.369267988 0.829945574 Longibaculum sp. KGMB06250 Farm f1 -0.000689982 0.000768051 60 21 0.373060182 0.829945574 Salmonella enterica Farm f3 0.001073603 0.001210609 60 26 0.37917759 0.829945574 Clostridium botulinum Farm f3 -0.000379429 0.000436393 60 7 0.388511973 0.831311541 Lachnosp.iraceae bacterium Farm f1 -0.001891497 0.002167864 60 31 0.38686254 0.831311541 Bifidobacterium longum Farm f1 -0.075077909 0.087385875 60 49 0.394124969 0.839365122 Bacteroides uniformis Farm f3 -0.001997078 0.002338061 60 33 0.396860646 0.841478991 Lachnoclostridium phocaeense Farm f1 -0.000374514 0.000441325 60 8 0.399914119 0.841933767 Lachnosp.iraceae bacterium Choco86 Farm f3 -0.000983072 0.001196075 60 46 0.414807584 0.85993333 Proteus mirabilis Farm f3 -0.000792793 0.000961964 60 8 0.413553447 0.85993333 Bacillus cereus Farm f3 0.002264407 0.002765748 60 47 0.416605324 0.860800405 Eubacterium rectale Farm f1 -0.000507423 0.000634022 60 15 0.427096032 0.863447931 Anaerostipes hadrus Farm f1 -0.000509716 0.000650123 60 8 0.436512513 0.876422332 Bifidobacterium breve Farm f3 0.002739013 0.003619117 60 38 0.452510232 0.876422332 Blautia producta Farm f1 -0.000941687 0.001205859 60 20 0.438320119 0.876422332 Lactobacillus salivarius Farm f3 -0.001062128 0.001397391 60 11 0.450575186 0.876422332 Bacteroides thetaiotaomicron Farm f1 0.032377204 0.043539722 60 44 0.460387661 0.878537922 Erysipelotrichaceae bacterium I46 Farm f3 -0.000967458 0.001309202 60 13 0.463186945 0.881184919 Eubacterium limosum Farm f3 -0.000295094 0.000412168 60 10 0.4771611 0.892288005 Klebsiella pneumoniae Farm f1 -0.006886879 0.009593543 60 27 0.475992373 0.892288005 Bacteroides caccae Farm f3 -0.001324486 0.001918607 60 16 0.492994073 0.898760711 Lachnosp.iraceae bacterium GAM79 Farm f3 -0.000217207 0.000313213 60 9 0.491037289 0.898760711 Pasteurella multocida Farm f1 0.001025398 0.001482498 60 7 0.492164372 0.898760711 Proteus mirabilis Farm f1 -0.001091032 0.00157803 60 8 0.492338892 0.898760711 Bacillus cereus Farm f1 0.003102347 0.004537002 60 47 0.497088057 0.899081008 Intestinimonas butyriciproducens Farm f1 0.000546754 0.000805155 60 29 0.500050532 0.899226318 Lachnoclostridium sp. YL32 Farm f1 0.002503673 0.003682617 60 44 0.4995505 0.899226318 Collinsella aerofaciens Farm f3 -0.018291703 0.027411417 60 46 0.507474173 0.90995369 Sutterella megalosp.haeroides Farm f3 -0.000534397 0.000812233 60 9 0.513427273 0.91799031 Lactobacillus johnsonii Farm f3 0.001586089 0.002424958 60 15 0.515895615 0.919768182 Klebsiella pneumoniae Farm f3 -0.003680847 0.005848205 60 27 0.531792509 0.934144268 Lachnosp.iraceae bacterium GAM79 Farm f1 -0.000307341 0.000513803 60 9 0.552274709 0.957651317 Veillonella rodentium Farm f1 -0.000254516 0.000441012 60 9 0.566303423 0.957651317 Anaerobutyricum hallii Farm f1 -0.001101784 0.001929484 60 36 0.570396069 0.961965263 Bifidobacterium animalis Farm f1 0.00026566 0.000472368 60 8 0.576214494 0.962792742 Longibaculum sp. KGMB06250 Farm f3 -0.000263661 0.000468202 60 21 0.575718508 0.962792742 Bacteroides sp. A1C1 Farm f3 -0.000326131 0.000591306 60 26 0.583579446 0.963622537 Clostridium scindens Farm f1 -0.000688039 0.001246798 60 37 0.583374469 0.963622537 Clostridium botulinum Farm f1 -0.000378455 0.000715869 60 7 0.599245091 0.964706593 Erysipelotrichaceae bacterium GAM147 Farm f3 -0.000189339 0.000357801 60 9 0.598893383 0.964706593 Fusobacterium mortiferum Farm f3 0.008934644 0.017045844 60 34 0.602356823 0.964706593 Bacteroides zoogleoformans Farm f1 -0.000227591 0.000465933 60 8 0.627238055 0.979788279 Bifidobacterium animalis Farm f3 -0.00013757 0.000287954 60 8 0.634792373 0.979788279 Bifidobacterium breve Farm f1 -0.002870975 0.005936891 60 38 0.630674365 0.979788279 Blautia hansenii Farm f1 -0.00221404 0.004750922 60 29 0.643108464 0.979788279 Clostridium bolteae Farm f1 0.001337728 0.002721154 60 31 0.625029854 0.979788279 Collinsella aerofaciens Farm f1 -0.020631454 0.044966378 60 46 0.648239858 0.979788279 Erysipelotrichaceae bacterium I46 Farm f1 -0.001011 0.002147649 60 13 0.639752722 0.979788279 Lachnoclostridium sp. YL32 Farm f3 -0.001090002 0.002244916 60 44 0.629292839 0.979788279 Lachnosp.iraceae bacterium Choco86 Farm f1 -0.000908945 0.001962072 60 46 0.645076398 0.979788279 Bacteroides dorei Farm f1 0.001995806 0.004592005 60 45 0.665598243 0.980711219 Clostridioides difficile Farm f1 -0.000814926 0.001879694 60 53 0.6663807 0.980711219 Fusobacterium varium Farm f3 0.00088613 0.002036254 60 11 0.665201282 0.980711219 Lactobacillus salivarius Farm f1 -0.001030221 0.002292316 60 11 0.654958647 0.980711219 Escherichia coli Farm f3 0.034149235 0.080738053 60 60 0.674033323 0.981263025 Paraprevotella xylaniphila Farm f1 -0.000207854 0.000482567 60 9 0.668415502 0.981263025 Bacteroides caccae Farm f1 -0.001271523 0.003147331 60 16 0.687837902 0.984428556 Bacteroides vulgatus Farm f1 -0.028063275 0.078703827 60 43 0.722830814 0.989179292 Enterococcus avium Farm f3 -0.003654815 0.010153972 60 14 0.720322772 0.989179292 Faecalibacterium prausnitzii Farm f3 -0.023247497 0.06188003 60 48 0.708649423 0.989179292 Gallibacterium anatis Farm f1 0.003704876 0.009418064 60 22 0.695617002 0.989179292 Parabacteroides distasonis Farm f1 -0.000967452 0.002947414 60 35 0.744025455 0.989179292 Streptococcus equinus Farm f1 -0.000172791 0.000538321 60 7 0.749486708 0.989179292 Streptococcus gallolyticus Farm f3 0.000484098 0.001354675 60 18 0.722246193 0.989179292 Streptococcus pasteurianus Farm f3 0.003290592 0.009731355 60 35 0.736591061 0.989179292 Veillonella parvula Farm f1 -0.000251412 0.000710819 60 10 0.724972124 0.989179292 Roseburia hominis Farm f1 0.000198174 0.000636041 60 18 0.756587151 0.992212217 Bifidobacterium bifidum Farm f1 0.006276452 0.026618318 60 21 0.814500976 0.998513561 Bifidobacterium longum Farm f3 0.011528896 0.05327026 60 49 0.829489105 0.998513561 Butyricimonas faecalis Farm f3 -0.000161675 0.000701408 60 13 0.81859007 0.998513561 Christensenella minuta Farm f1 -0.000108881 0.000386334 60 7 0.779170846 0.998513561 Christensenella minuta Farm f3 6.09E-05 0.000235508 60 7 0.797049889 0.998513561 Clostridium bolteae Farm f3 -0.000393901 0.00165881 60 31 0.81321575 0.998513561 Eggerthella lenta Farm f3 -0.000142378 0.000680211 60 17 0.835004902 0.998513561 Enterococcus faecium Farm f3 0.000710659 0.00242173 60 30 0.770323432 0.998513561 Erysipelotrichaceae bacterium GAM147 Farm f1 -0.000162621 0.000586946 60 9 0.782808961 0.998513561 Escherichia coli Farm f1 -0.032947634 0.132444734 60 60 0.80450392 0.998513561 Escherichia virus AKFV33 Farm f3 0.000312014 0.001296586 60 7 0.810760672 0.998513561 Escherichia virus H8 Farm f3 -0.00021961 0.000969342 60 7 0.821640577 0.998513561 Escherichia virus slur09 Farm f3 0.00025591 0.001057562 60 7 0.8097286 0.998513561 Eubacterium limosum Farm f1 0.000190182 0.00067613 60 10 0.779590266 0.998513561 Faecalibacterium prausnitzii Farm f1 0.023217722 0.101509558 60 48 0.819963323 0.998513561 Flavonifractor plautii Farm f1 -0.000701889 0.002579196 60 25 0.786575822 0.998513561 Roseburia intestinalis Farm f1 -0.000202131 0.000813553 60 25 0.804742969 0.998513561 Ruminococcus gnavus Farm f1 0.011871505 0.04838475 60 55 0.807128123 0.998513561 Shigella dysenteriae Farm f3 -0.000126861 0.000532289 60 22 0.81254394 0.998513561 Streptococcus equinus Farm f3 -8.62E-05 0.00032816 60 7 0.793802441 0.998513561 Streptococcus gallolyticus Farm f1 -0.00050075 0.002222244 60 18 0.822585069 0.998513561 Veillonella rodentium Farm f3 5.91E-05 0.00026884 60 9 0.826840344 0.998513561 Bacteroides caecimuris Farm f3 -0.000149696 0.001057562 60 30 0.887973314 0.998898139 Bacteroides dorei Farm f3 -0.000179884 0.002799277 60 45 0.949004259 0.998898139 Bacteroides uniformis Farm f1 -0.00071624 0.003835414 60 33 0.852574446 0.998898139 Bacteroides zoogleoformans Farm f3 -5.18E-05 0.000284032 60 8 0.856050029 0.998898139 Bifidobacterium bifidum Farm f3 -0.002084708 0.016226475 60 21 0.898258803 0.998898139 Clostridiales bacterium CCNA10 Farm f1 -8.35E-05 0.001034075 60 33 0.935971778 0.998898139 Clostridioides difficile Farm f3 -0.000225351 0.001145858 60 53 0.844841099 0.998898139 Enterococcus avium Farm f1 -0.002117568 0.016656831 60 14 0.89931934 0.998898139 Enterococcus durans Farm f1 4.98E-05 0.01344099 60 11 0.997056964 0.998898139 Enterococcus durans Farm f3 -0.001468996 0.008193601 60 11 0.858397007 0.998898139 Enterococcus faecium Farm f1 -0.000288525 0.003972667 60 30 0.942375935 0.998898139 Escherichia virus AKFV33 Farm f1 5.24E-06 0.002126952 60 7 0.998044441 0.998898139 Escherichia virus DT57C Farm f1 3.08E-05 0.001594372 60 7 0.984645148 0.998898139 Escherichia virus DT57C Farm f3 2.00E-05 0.000971926 60 7 0.983670081 0.998898139 Escherichia virus FFH1 Farm f1 1.27E-05 0.002719039 60 7 0.996304888 0.998898139 Escherichia virus FFH1 Farm f3 -3.35E-05 0.001657521 60 7 0.983962831 0.998898139 Escherichia virus H8 Farm f1 -0.000191668 0.001590132 60 7 0.904514263 0.998898139 Escherichia virus slur09 Farm f1 -4.84E-06 0.001734852 60 7 0.99778344 0.998898139 Escherichia virus T5 Farm f1 4.36E-05 0.002220416 60 7 0.984396918 0.998898139 Escherichia virus T5 Farm f3 0.000118535 0.001353562 60 7 0.930546443 0.998898139 Eubacterium rectale Farm f3 -3.40E-05 0.000386499 60 15 0.930171691 0.998898139 Fusobacterium mortiferum Farm f1 0.005709329 0.027962431 60 34 0.838995985 0.998898139 Fusobacterium ulcerans Farm f1 -0.000491443 0.003463768 60 10 0.887712028 0.998898139 Fusobacterium ulcerans Farm f3 0.000211053 0.002111506 60 10 0.920758172 0.998898139 Fusobacterium varium Farm f1 -0.000191454 0.003340323 60 11 0.954508948 0.998898139 Lactobacillus reuteri Farm f3 0.000118818 0.001124386 60 14 0.916240414 0.998898139 Lactococcus lactis Farm f1 4.23E-05 0.000361784 60 7 0.907422804 0.998898139 Lactococcus lactis Farm f3 4.27E-05 0.000220543 60 7 0.847383738 0.998898139 Paraprevotella xylaniphila Farm f3 -1.22E-05 0.000294172 60 9 0.967120047 0.998898139 Prevotella intermedia Farm f1 -0.000151476 0.000997536 60 7 0.879881354 0.998898139 Prevotella intermedia Farm f3 3.96E-05 0.000608096 60 7 0.948384817 0.998898139 Ruminococcus gnavus Farm f3 0.002061727 0.02949525 60 55 0.944536082 0.998898139 Salmonella virus sp.C35 Farm f1 -6.34E-05 0.001444674 60 7 0.965159079 0.998898139 Salmonella virus sp.C35 Farm f3 9.44E-05 0.000880671 60 7 0.91507156 0.998898139 Shigella boydii Farm f1 -9.43E-05 0.000996473 60 21 0.924967153 0.998898139 Shigella boydii Farm f3 -0.000107792 0.000607448 60 21 0.85983073 0.998898139 Shigella dysenteriae Farm f1 -0.000164631 0.00087318 60 22 0.851172313 0.998898139 Shigella flexneri Farm f1 -0.000524706 0.003304253 60 39 0.874432239 0.998898139 Shigella flexneri Farm f3 0.000251466 0.002014266 60 39 0.901120402 0.998898139 Streptococcus pasteurianus Farm f1 -0.001478538 0.01596356 60 35 0.926555042 0.998898139 Sutterella megalosp.haeroides Farm f1 2.74E-05 0.001332408 60 9 0.983656877 0.998898139 Veillonella parvula Farm f3 1.29E-05 0.000433314 60 10 0.976300442 0.998898139 Escherichia coli SwabDay SwabDay -0.144769464 0.021136314 60 60 7.88E-09 4.02E-06 Shigella dysenteriae SwabDay SwabDay -0.000935909 0.000139347 60 22 1.29E-08 4.02E-06 Shigella boydii SwabDay SwabDay -0.001021153 0.000159023 60 21 3.84E-08 7.99E-06 Bacteroides sp. A1C1 SwabDay SwabDay 0.000945689 0.000154797 60 26 1.21E-07 1.51E-05 Shigella flexneri SwabDay SwabDay -0.003252584 0.000527312 60 39 9.76E-08 1.51E-05 Bacteroides ovatus SwabDay SwabDay 0.003379403 0.00060347 60 36 7.78E-07 8.09E-05 Bacteroides uniformis SwabDay SwabDay 0.003372152 0.000612078 60 33 1.08E-06 9.62E-05 Clostridium perfringens SwabDay SwabDay -0.028789161 0.005718438 60 33 5.88E-06 0.000407802 Bacteroides dorei SwabDay SwabDay 0.003378064 0.000732819 60 45 2.58E-05 0.001341253 Lachnoclostridium sp. YL32 SwabDay SwabDay 0.002718965 0.000587694 60 44 2.43E-05 0.001341253 Bacteroides caecimuris SwabDay SwabDay 0.00123781 0.000276858 60 30 4.14E-05 0.001987285 Collinsella aerofaciens SwabDay SwabDay 0.030403236 0.007176 60 46 9.09E-05 0.003779361 Parabacteroides distasonis SwabDay SwabDay 0.001996584 0.000470366 60 35 8.85E-05 0.003779361 Enterococcus faecalis SwabDay SwabDay -0.014910602 0.003821992 60 33 0.000271628 0.009970359 Butyricimonas faecalis SwabDay SwabDay 0.000707518 0.000183621 60 13 0.000316775 0.01098153 Faecalibacterium prausnitzii SwabDay SwabDay 0.060737087 0.016199495 60 48 0.000440076 0.014453026 Bacteroides vulgatus SwabDay SwabDay 0.045978281 0.012560022 60 43 0.000580682 0.018117285 Bacteroides salanitronis SwabDay SwabDay 0.001565763 0.000438718 60 19 0.000771032 0.022910665 Longibaculum sp. KGMB06250 SwabDay SwabDay 0.000430046 0.00012257 60 21 0.000927404 0.026304555 Salmonella enterica SwabDay SwabDay -0.001062322 0.000316924 60 26 0.001485853 0.040311844 Bacteroides xylanisolvens SwabDay SwabDay 0.004404359 0.00133094 60 35 0.001686701 0.043854233 Bacteroides heparinolyticus SwabDay SwabDay 0.000287828 8.80E-05 60 9 0.001889251 0.047155715 Enterococcus faecium SwabDay SwabDay -0.002043527 0.000633982 60 30 0.002170043 0.05208103 Clostridium butyricum SwabDay SwabDay -0.001493899 0.000473644 60 12 0.002652093 0.055894752 Roseburia intestinalis SwabDay SwabDay 0.00040744 0.000129832 60 25 0.002775622 0.055894752 Bacteroides cellulosilyticus SwabDay SwabDay 0.000458432 0.000147157 60 13 0.002964335 0.057804537 Streptococcus pasteurianus SwabDay SwabDay -0.00788889 0.002547559 60 35 0.003126123 0.059112135 Bacteroides helcogenes SwabDay SwabDay 0.000244738 8.06E-05 60 9 0.003696241 0.067836886 Bacteroides intestinalis SwabDay SwabDay 0.000244759 8.11E-05 60 10 0.003903528 0.069594332 Flavonifractor plautii SwabDay SwabDay 0.001217146 0.000411603 60 25 0.004629817 0.080250162 Streptococcus gallolyticus SwabDay SwabDay -0.001043688 0.000354639 60 18 0.0048148 0.081200948 Bifidobacterium catenulatum SwabDay SwabDay 0.001817503 0.00062599 60 22 0.005370057 0.085920919 Paraprevotella xylaniphila SwabDay SwabDay 0.000222151 7.70E-05 60 9 0.005653312 0.088191664 Bifidobacterium pseudocatenulatum SwabDay SwabDay 0.005506348 0.001924856 60 24 0.006036712 0.089688291 Bacteroides zoogleoformans SwabDay SwabDay 0.000209255 7.44E-05 60 8 0.006847196 0.097105685 Bifidobacterium bifidum SwabDay SwabDay 0.011833283 0.004247908 60 21 0.007394016 0.102530358 Bacillus cereus SwabDay SwabDay -0.001981326 0.000724042 60 47 0.00843191 0.111947066 Clostridium scindens SwabDay SwabDay 0.000539154 0.000198971 60 37 0.009051655 0.116301452 Klebsiella pneumoniae SwabDay SwabDay -0.004131647 0.001530994 60 27 0.009319027 0.116301452 Escherichia virus slur09 SwabDay SwabDay -0.000692039 0.000276858 60 7 0.015564096 0.164610104 Bifidobacterium adolescentis SwabDay SwabDay 0.000230663 9.27E-05 60 9 0.015999286 0.166392572 Escherichia virus AKFV33 SwabDay SwabDay -0.000826993 0.000339432 60 7 0.018227 0.1805341 Lactobacillus reuteri SwabDay SwabDay 0.000717686 0.000294352 60 14 0.018146355 0.1805341 Salmonella virus sp.C35 SwabDay SwabDay -0.000555726 0.00023055 60 7 0.019434946 0.18374858 Anaerobutyricum hallii SwabDay SwabDay 0.000737983 0.000307918 60 36 0.020103666 0.186178225 Bifidobacterium breve SwabDay SwabDay 0.002130777 0.000947444 60 38 0.028694283 0.241962603 Proteus mirabilis SwabDay SwabDay -0.000559769 0.000251831 60 8 0.030518106 0.25088569 Escherichia virus T5 SwabDay SwabDay -0.000772659 0.000354347 60 7 0.033679894 0.272938358 Flintibacter sp. KGMB00164 SwabDay SwabDay 0.001611862 0.00074889 60 27 0.03594411 0.283912969 Bifidobacterium longum SwabDay SwabDay 0.029719344 0.013945555 60 49 0.037737576 0.294353094 Escherichia virus DT57C SwabDay SwabDay -0.000531635 0.000254439 60 7 0.041484631 0.311884454 Blautia sp. SC05B48 SwabDay SwabDay 0.000521159 0.000253857 60 24 0.045027021 0.323353093 Escherichia virus FFH1 SwabDay SwabDay -0.000888053 0.00043392 60 7 0.04567305 0.323863444 Bacteroides caccae SwabDay SwabDay 0.001019096 0.00050227 60 16 0.047496509 0.328490467 Escherichia virus H8 SwabDay SwabDay -0.000514423 0.000253763 60 7 0.047686442 0.328490467 Bifidobacterium animalis SwabDay SwabDay 0.000150577 7.54E-05 60 8 0.050917514 0.329858918 Eubacterium maltosivorans SwabDay SwabDay 0.000131686 6.57E-05 60 10 0.050161253 0.329858918 Clostridioides difficile SwabDay SwabDay 0.000595048 0.000299973 60 53 0.05248275 0.334175878 Clostridiales bacterium CCNA10 SwabDay SwabDay 0.000317692 0.000165024 60 33 0.059587144 0.353204104 Lactococcus lactis SwabDay SwabDay -0.00011071 5.77E-05 60 7 0.060565447 0.353204104 Blautia producta SwabDay SwabDay 0.000365315 0.000192438 60 20 0.063100926 0.354268774 Lachnosp.iraceae bacterium GAM79 SwabDay SwabDay 0.000155579 8.20E-05 60 9 0.063228052 0.354268774 Megamonas hypermegale SwabDay SwabDay 0.001844332 0.000971961 60 19 0.063210523 0.354268774 Eubacterium rectale SwabDay SwabDay 0.000182092 0.000101181 60 15 0.077606853 0.406946859 Eggerthella lenta SwabDay SwabDay 0.000313584 0.000178072 60 17 0.084007047 0.428745764 Faecalitalea cylindroides SwabDay SwabDay 0.000124961 7.16E-05 60 9 0.086588667 0.428820068 Clostridium bolteae SwabDay SwabDay 0.000662688 0.000434258 60 31 0.132950066 0.517002866 Clostridium botulinum SwabDay SwabDay -0.00017446 0.000114243 60 7 0.132683359 0.517002866 Gallibacterium anatis SwabDay SwabDay 0.002293802 0.00150299 60 22 0.132916242 0.517002866 Intestinimonas butyriciproducens SwabDay SwabDay 0.000195852 0.000128491 60 29 0.133393368 0.517002866 Prevotella intermedia SwabDay SwabDay 0.000245081 0.000159193 60 7 0.129625611 0.517002866 Streptococcus infantarius SwabDay SwabDay -0.001111802 0.0007128 60 12 0.124766624 0.517002866 Blautia sp. N6H1 15 SwabDay SwabDay 0.000578972 0.000423865 60 31 0.177728411 0.610177745 Enterococcus avium SwabDay SwabDay -0.003628873 0.002658196 60 14 0.177968509 0.610177745 Enterococcus durans SwabDay SwabDay -0.002893372 0.002144993 60 11 0.183105644 0.614289902 Lactobacillus amylovorus SwabDay SwabDay 0.00067739 0.000531894 60 15 0.20838233 0.634295484 Clostridium saccharolyticum SwabDay SwabDay 7.60E-05 6.21E-05 60 7 0.226684605 0.660986886 Lachnosp.iraceae bacterium KGMB03038 SwabDay SwabDay 9.73E-05 8.94E-05 60 11 0.281193814 0.743495508 Lachnosp.iraceae bacterium Choco86 SwabDay SwabDay 0.000320666 0.000313119 60 46 0.310438938 0.785174002 Anaerostipes hadrus SwabDay SwabDay 0.000102949 0.00010375 60 8 0.325571583 0.806177254 Bacteroides fragilis SwabDay SwabDay 0.020049212 0.022558995 60 50 0.378155734 0.829945574 Bacteroides thetaiotaomicron SwabDay SwabDay -0.006323253 0.006948326 60 44 0.366921756 0.829945574 Streptococcus equinus SwabDay SwabDay -7.66E-05 8.59E-05 60 7 0.37648252 0.829945574 Ruminococcus gnavus SwabDay SwabDay -0.006753537 0.007721524 60 55 0.38571737 0.831311541 Lachnosp.iraceae bacterium SwabDay SwabDay 0.000259717 0.000345961 60 31 0.456146294 0.876422332 Pasteurella multocida SwabDay SwabDay 0.000178268 0.000236586 60 7 0.454483486 0.876422332 Roseburia hominis SwabDay SwabDay 7.83E-05 0.000101503 60 18 0.444073003 0.876422332 Erysipelotrichaceae bacterium GAM147 SwabDay SwabDay -6.52E-05 9.37E-05 60 9 0.489603968 0.898760711 Eubacterium limosum SwabDay SwabDay 6.34E-05 0.000107901 60 10 0.559267857 0.957651317 Lactobacillus johnsonii SwabDay SwabDay 0.000370103 0.000634827 60 15 0.56236685 0.957651317 Enterococcus cecorum SwabDay SwabDay -0.003012864 0.005423583 60 40 0.580882086 0.963622537 Lachnoclostridium phocaeense SwabDay SwabDay 3.86E-05 7.04E-05 60 8 0.58564353 0.963622537 Veillonella parvula SwabDay SwabDay -5.97E-05 0.000113437 60 10 0.601078059 0.964706593 Fusobacterium mortiferum SwabDay SwabDay 0.002192614 0.00446241 60 34 0.625206187 0.979788279 Sutterella megalosp.haeroides SwabDay SwabDay 9.85E-05 0.000212633 60 9 0.645146345 0.979788279 Blautia hansenii SwabDay SwabDay -0.000333129 0.00075818 60 29 0.662172724 0.980711219 Streptococcus thermophilus SwabDay SwabDay -8.75E-05 0.000208567 60 16 0.676623689 0.981891121 Christensenella minuta SwabDay SwabDay -1.96E-05 6.17E-05 60 7 0.751395808 0.989179292 Fusobacterium ulcerans SwabDay SwabDay -0.000179066 0.000552769 60 10 0.747256106 0.989179292 Lactobacillus salivarius SwabDay SwabDay -0.000120133 0.000365821 60 11 0.743908267 0.989179292 Parabacteroides sp. CT06 SwabDay SwabDay -3.18E-05 9.40E-05 60 7 0.736263542 0.989179292 Fusobacterium varium SwabDay SwabDay -0.000131886 0.000533068 60 11 0.805547243 0.998513561 Erysipelotrichaceae bacterium I46 SwabDay SwabDay 1.97E-05 0.000342734 60 13 0.954391935 0.998898139 Veillonella rodentium SwabDay SwabDay -1.12E-05 7.04E-05 60 9 0.873632625 0.998898139 Bacteroides fragilis Synulox Y 0.370507814 0.091018021 60 50 0.000156994 0.006122773 Bacteroides vulgatus Synulox Y -0.161266585 0.050675499 60 43 0.002444209 0.054470936 Clostridiales bacterium CCNA10 Synulox Y -0.001935356 0.000665816 60 33 0.005321017 0.085920919 Flintibacter sp. KGMB00164 Synulox Y -0.008335476 0.003021522 60 27 0.007947512 0.107809734 Bacteroides sp. A1C1 Synulox Y -0.001644751 0.000624556 60 26 0.011051951 0.131770677 Intestinimonas butyriciproducens Synulox Y -0.001341248 0.00051842 60 29 0.01245597 0.138795094 Bacteroides intestinalis Synulox Y -0.00084036 0.000327192 60 10 0.013070802 0.143090886 Longibaculum sp. KGMB06250 Synulox Y -0.001245408 0.00049453 60 21 0.014844816 0.159709745 Bacteroides salanitronis Synulox Y -0.004281028 0.001770081 60 19 0.019050222 0.18374858 Bacteroides uniformis Synulox Y -0.005680322 0.002469531 60 33 0.025405151 0.220177974 Blautia sp. N6H1 15 Synulox Y -0.003868031 0.001710155 60 31 0.027836375 0.237943812 Fusobacterium mortiferum Synulox Y 0.038866118 0.018004336 60 34 0.03542055 0.283364397 Blautia producta Synulox Y -0.001624664 0.000776423 60 20 0.041198639 0.311884454 Roseburia intestinalis Synulox Y -0.001089918 0.000523827 60 25 0.042312052 0.314318099 Streptococcus gallolyticus Synulox Y 0.002897641 0.001430849 60 18 0.04790486 0.328490467 Lachnoclostridium sp. YL32 Synulox Y -0.004774012 0.002371149 60 44 0.049165683 0.329858918 Enterococcus faecalis Synulox Y -0.030175208 0.015420464 60 33 0.055644613 0.345939413 Faecalitalea cylindroides Synulox Y -0.000562185 0.000288745 60 9 0.056842834 0.347744399 Bacteroides cellulosilyticus Synulox Y -0.001149524 0.000593729 60 13 0.058195399 0.352562418 Streptococcus pasteurianus Synulox Y 0.019717456 0.010278552 60 35 0.060465569 0.353204104 Bacteroides helcogenes Synulox Y -0.000614579 0.000325076 60 9 0.064154441 0.354268774 Clostridium saccharolyticum Synulox Y -0.000474453 0.0002507 60 7 0.063889195 0.354268774 Clostridium scindens Synulox Y -0.001524965 0.000802783 60 37 0.062933471 0.354268774 Flavonifractor plautii Synulox Y -0.003059539 0.001660682 60 25 0.071022673 0.388755686 Eubacterium maltosivorans Synulox Y -0.000474458 0.000265087 60 10 0.079196533 0.411821969 Bacillus cereus Synulox Y 0.005025719 0.002921267 60 47 0.09119589 0.437740271 Bacteroides heparinolyticus Synulox Y -0.000611965 0.000355059 60 9 0.090617001 0.437740271 Faecalibacterium prausnitzii Synulox Y -0.108135645 0.06535956 60 48 0.103942464 0.479629428 Butyricimonas faecalis Synulox Y -0.001210415 0.000740849 60 13 0.108223288 0.479903904 Streptococcus infantarius Synulox Y -0.004723685 0.002875909 60 12 0.106406892 0.479903904 Roseburia hominis Synulox Y -0.000658534 0.000409532 60 18 0.113773064 0.49301661 Clostridium butyricum Synulox Y -0.003033439 0.001910996 60 12 0.118379714 0.506260928 Blautia sp. SC05B48 Synulox Y -0.001614742 0.001024228 60 24 0.120851009 0.513000202 Lachnosp.iraceae bacterium KGMB03038 Synulox Y -0.000554078 0.000360617 60 11 0.130372064 0.517002866 Bacteroides caecimuris Synulox Y -0.001678733 0.001117029 60 30 0.138811614 0.531401517 Clostridioides difficile Synulox Y -0.001770374 0.00121029 60 53 0.149436012 0.548267447 Megamonas hypermegale Synulox Y -0.005440262 0.00392154 60 19 0.171163612 0.60342426 Bifidobacterium animalis Synulox Y -0.000411998 0.000304146 60 8 0.181290576 0.611557163 Bifidobacterium bifidum Synulox Y -0.022950973 0.017138894 60 21 0.186247845 0.615685925 Enterococcus avium Synulox Y 0.014280279 0.010724932 60 14 0.188722258 0.615685925 Parabacteroides distasonis Synulox Y -0.002511604 0.001897769 60 35 0.19136628 0.615685925 Lactobacillus reuteri Synulox Y -0.001562269 0.00118761 60 14 0.194013653 0.620843691 Lachnoclostridium phocaeense Synulox Y -0.000367998 0.000284159 60 8 0.200918203 0.625286082 Lachnosp.iraceae bacterium Choco86 Synulox Y -0.00163917 0.001263331 60 46 0.200078817 0.625286082 Bacteroides caccae Synulox Y 0.002608823 0.002026491 60 16 0.203562376 0.626810937 Eubacterium rectale Synulox Y -0.000525126 0.000408232 60 15 0.203914456 0.626810937 Anaerostipes hadrus Synulox Y -0.00052113 0.000418599 60 8 0.218630249 0.657353033 Clostridium bolteae Synulox Y -0.002105175 0.001752086 60 31 0.234889146 0.669273182 Collinsella aerofaciens Synulox Y -0.033728514 0.028952768 60 46 0.249256057 0.694356159 Bacteroides dorei Synulox Y -0.00336292 0.002956681 60 45 0.260488457 0.703135211 Sutterella megalosp.haeroides Synulox Y 0.000912406 0.000857905 60 9 0.292364427 0.760147511 Lachnosp.iraceae bacterium GAM79 Synulox Y -0.000338545 0.000330825 60 9 0.310798042 0.785174002 Proteus mirabilis Synulox Y 0.001033313 0.001016056 60 8 0.313781029 0.78634282 Bifidobacterium longum Synulox Y -0.054200771 0.056265661 60 49 0.339771193 0.821772188 Bacteroides zoogleoformans Synulox Y -0.000284112 0.000300003 60 8 0.347922621 0.823274494 Bifidobacterium pseudocatenulatum Synulox Y 0.007057405 0.007766153 60 24 0.367601875 0.829945574 Paraprevotella xylaniphila Synulox Y -0.000283889 0.000310714 60 9 0.365029893 0.829945574 Lactococcus lactis Synulox Y 0.00019401 0.000232944 60 7 0.408661606 0.852859004 Bacteroides xylanisolvens Synulox Y 0.004345942 0.0053699 60 35 0.421952383 0.862094994 Bifidobacterium catenulatum Synulox Y 0.002043539 0.002525659 60 22 0.422068826 0.862094994 Enterococcus faecium Synulox Y 0.002066537 0.002557905 60 30 0.422758122 0.862094994 Eubacterium limosum Synulox Y -0.000354453 0.000435344 60 10 0.419178261 0.862094994 Erysipelotrichaceae bacterium I46 Synulox Y -0.001057889 0.001382819 60 13 0.447650972 0.876422332 Anaerobutyricum hallii Synulox Y -0.000894661 0.001242348 60 36 0.474604428 0.892288005 Clostridium perfringens Synulox Y 0.016634113 0.023071989 60 33 0.474098916 0.892288005 Christensenella minuta Synulox Y 0.000171724 0.000248751 60 7 0.492988712 0.898760711 Bacteroides thetaiotaomicron Synulox Y 0.017635245 0.028034179 60 44 0.532010394 0.934144268 Bifidobacterium breve Synulox Y -0.002419991 0.003822621 60 38 0.529409564 0.934144268 Eggerthella lenta Synulox Y -0.000449274 0.00071846 60 17 0.534438307 0.934144268 Lactobacillus salivarius Synulox Y -0.000828243 0.001475967 60 11 0.57705847 0.962792742 Blautia hansenii Synulox Y -0.001618726 0.003059004 60 29 0.598898755 0.964706593 Fusobacterium ulcerans Synulox Y 0.001193896 0.002230237 60 10 0.594666082 0.964706593 Gallibacterium anatis Synulox Y -0.002867879 0.006064064 60 22 0.638204908 0.979788279 Lachnosp.iraceae bacterium Synulox Y -0.000686957 0.001395835 60 31 0.624647445 0.979788279 Prevotella intermedia Synulox Y -0.000297734 0.00064229 60 7 0.644867476 0.979788279 Klebsiella pneumoniae Synulox Y 0.002765454 0.006177052 60 27 0.656195714 0.980711219 Shigella boydii Synulox Y 0.000284205 0.000641605 60 21 0.659597743 0.980711219 Lactobacillus johnsonii Synulox Y -0.001060401 0.002561314 60 15 0.68053978 0.982620899 Ruminococcus gnavus Synulox Y -0.012746756 0.031153776 60 55 0.684073934 0.982620899 Clostridium botulinum Synulox Y -0.000162801 0.000460931 60 7 0.725338815 0.989179292 Fusobacterium varium Synulox Y 0.000815156 0.002150753 60 11 0.706194995 0.989179292 Lactobacillus amylovorus Synulox Y -0.000813128 0.002146014 60 15 0.706274799 0.989179292 Shigella dysenteriae Synulox Y 0.000211905 0.000562219 60 22 0.707747306 0.989179292 Shigella flexneri Synulox Y 0.00081151 0.002127529 60 39 0.704406815 0.989179292 Bacteroides ovatus Synulox Y 0.000709257 0.002434798 60 36 0.771958903 0.998513561 Parabacteroides sp. CT06 Synulox Y 8.43E-05 0.000379442 60 7 0.824972363 0.998513561 Streptococcus thermophilus Synulox Y -0.000174357 0.000841499 60 16 0.836649079 0.998513561 Bifidobacterium adolescentis Synulox Y 6.17E-05 0.000373958 60 9 0.869672865 0.998898139 Enterococcus cecorum Synulox Y 0.000913156 0.021882348 60 40 0.966870552 0.998898139 Enterococcus durans Synulox Y -0.00051002 0.00865433 60 11 0.953227631 0.998898139 Erysipelotrichaceae bacterium GAM147 Synulox Y -3.86E-05 0.00037792 60 9 0.918932419 0.998898139 Escherichia coli Synulox Y 0.011986171 0.085277975 60 60 0.888755024 0.998898139 Escherichia virus AKFV33 Synulox Y 7.15E-06 0.001369493 60 7 0.995856648 0.998898139 Escherichia virus DT57C Synulox Y 2.12E-06 0.001026578 60 7 0.998356284 0.998898139 Escherichia virus FFH1 Synulox Y -3.42E-05 0.001750724 60 7 0.984474363 0.998898139 Escherichia virus H8 Synulox Y -0.000195368 0.001023848 60 7 0.849397832 0.998898139 Escherichia virus slur09 Synulox Y -5.28E-06 0.00111703 60 7 0.996247156 0.998898139 Escherichia virus T5 Synulox Y 1.40E-05 0.001429673 60 7 0.99223526 0.998898139 Pasteurella multocida Synulox Y -0.000129601 0.000954545 60 7 0.892515312 0.998898139 Salmonella enterica Synulox Y 0.00023374 0.001278682 60 26 0.855654415 0.998898139 Salmonella virus sp.C35 Synulox Y -6.25E-05 0.000930191 60 7 0.946670852 0.998898139 Streptococcus equinus Synulox Y 5.10E-05 0.000346612 60 7 0.88355537 0.998898139 Veillonella parvula Synulox Y 6.91E-05 0.000457679 60 10 0.880491606 0.998898139 Veillonella rodentium Synulox Y -2.69E-05 0.000283957 60 9 0.924918802 0.998898139