4_1_Jan_SF_Bin61_scaffold_1987_c1:3-2501_1

Order by:

Oligo-State: Monomer
GMQE: 0.70
QMEANDisCo Global:: 0.68 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity: 37.28%
Coverage

Biounit Oligo State	Hetero-trimer
QSQE	0.00
Method	X-ray, 2.97 Å
Seq Similarity	0.39
Coverage	0.96
Range	1-829

Ligand	Added to Model	Description
CA	✕ - Binding site not conserved.	CALCIUM ION
CA	✕ - Binding site not conserved.	CALCIUM ION
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
GMQE: 0.69
QMEANDisCo Global:: 0.67 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity: 39.26%
Coverage

Biounit Oligo State	Hetero-trimer
QSQE	0.00
Method	X-ray, 2.97 Å
Seq Similarity	0.40
Coverage	0.95
Range	2-824

Ligand	Added to Model	Description
CA	✕ - Binding site not conserved.	CALCIUM ION
CA	✕ - Binding site not conserved.	CALCIUM ION
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
GMQE: 0.38
QMEANDisCo Global:: 0.43 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

3ir5.1.A Respiratory nitrate reductase 1 alpha chain
Crystal structure of NarGHI mutant NarG-H49C

Seq Identity: 23.01%
Coverage

Biounit Oligo State	Hetero-trimer
QSQE	0.00
Method	X-ray, 2.30 Å
Seq Similarity	0.31
Coverage	0.78
Range	1-795

Ligand	Added to Model	Description
6MO	✕ - Binding site not conserved.	MOLYBDENUM(VI) ION
AGA	✕ - Binding site not conserved.	(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
GMQE: 0.12
QMEANDisCo Global:: 0.35 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

2fug.2.C NADH-quinone oxidoreductase chain 3
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

Seq Identity: 20.00%
Coverage

Biounit Oligo State	Hetero-octamer
QSQE	0.00
Method	X-ray, 3.30 Å
Seq Similarity	0.28
Coverage	0.23
Range	342-706

Ligand	Added to Model	Description
FES	✕ - Binding site not conserved.	FE2/S2 (INORGANIC) CLUSTER
FES	✕ - Binding site not conserved.	FE2/S2 (INORGANIC) CLUSTER
FMN	✕ - Binding site not conserved.	FLAVIN MONONUCLEOTIDE
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

4_1_Jan_SF_Bin61_scaffold_1987_c1:3-2501_1

Created: March 29, 2023, 6:30 p.m. at 18:30

Click model image to view in 3D

Click model image to view in 3D

4_1_Jan_SF_Bin61_scaffold_1987_c1:3-2501_1

Created: March 29, 2023, 6:30 p.m. at 18:30

Background

Resolution

Click model image to view in 3D

Click model image to view in 3D