21_Jan_SF_Bin67_scaffold_32672_c1:3-2330_1

Order by:

Oligo-State: Monomer
GMQE: 0.81
QMEANDisCo Global:: 0.78 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity: 53.57%
Coverage

Biounit Oligo State	Hetero-trimer
QSQE	0.00
Method	X-ray, 2.97 Å
Seq Similarity	0.46
Coverage	1.00
Range	1-772

Ligand	Added to Model	Description
CA	✕ - Binding site not conserved.	CALCIUM ION
CA	✕ - Binding site not conserved.	CALCIUM ION
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
GMQE: 0.40
QMEANDisCo Global:: 0.45 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

3ir7.1.A Respiratory nitrate reductase 1 alpha chain
Crystal structure of NarGHI mutant NarG-R94S

Seq Identity: 22.74%
Coverage

Biounit Oligo State	Hetero-trimer
QSQE	0.00
Method	X-ray, 2.50 Å
Seq Similarity	0.31
Coverage	0.80
Range	1-739

Ligand	Added to Model	Description
6MO	✕ - Binding site not conserved.	MOLYBDENUM(VI) ION
AGA	✕ - Binding site not conserved.	(1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
GMQE: 0.21
QMEANDisCo Global:: 0.37 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

2ivf.1.A ETHYLBENZENE DEHYDROGENASE ALPHA-SUBUNIT
ETHYLBENZENE DEHYDROGENASE FROM AROMATOLEUM AROMATICUM

Seq Identity: 32.76%
Coverage

Biounit Oligo State	Hetero-trimer
QSQE	0.00
Method	X-ray, 1.88 Å
Seq Similarity	0.36
Coverage	0.53
Range	1-473

Ligand	Added to Model	Description
ACT	✕ - Not biologically relevant.	ACETATE ION
ACT	✕ - Not biologically relevant.	ACETATE ION
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
GOL	✕ - Not biologically relevant.	GLYCEROL
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MES	✕ - Binding site not conserved.	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
PO4	✕ - Not biologically relevant.	PHOSPHATE ION
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
GMQE: 0.12
QMEANDisCo Global:: 0.33 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

2fug.2.C NADH-quinone oxidoreductase chain 3
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

Seq Identity: 16.58%
Coverage

Biounit Oligo State	Hetero-octamer
QSQE	0.00
Method	X-ray, 3.30 Å
Seq Similarity	0.27
Coverage	0.25
Range	296-649

Ligand	Added to Model	Description
FES	✕ - Binding site not conserved.	FE2/S2 (INORGANIC) CLUSTER
FES	✕ - Binding site not conserved.	FE2/S2 (INORGANIC) CLUSTER
FMN	✕ - Binding site not conserved.	FLAVIN MONONUCLEOTIDE
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

21_Jan_SF_Bin67_scaffold_32672_c1:3-2330_1

Created: March 29, 2023, 6:30 p.m. at 18:30

Click model image to view in 3D

Click model image to view in 3D

21_Jan_SF_Bin67_scaffold_32672_c1:3-2330_1

Created: March 29, 2023, 6:30 p.m. at 18:30

Background

Resolution

Click model image to view in 3D

Click model image to view in 3D