13_July_SF_Bin2_scaffold_9994_c1_2-2545_1

Order by:

Oligo-State: Monomer
GMQE: 0.86
QMEANDisCo Global:: 0.83 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity: 65.28%
Coverage

Biounit Oligo State	Hetero-trimer
QSQE	0.00
Method	X-ray, 2.97 Å
Seq Similarity	0.51
Coverage	1.00
Range	1-845

Ligand	Added to Model	Description
CA	✕ - Binding site not conserved.	CALCIUM ION
CA	✕ - Binding site not conserved.	CALCIUM ION
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
HEM	✕ - Binding site not conserved.	PROTOPORPHYRIN IX CONTAINING FE
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1	✕ - Binding site not conserved.	PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
(matching prediction)
GMQE: 0.45
QMEANDisCo Global:: 0.50 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

1r27.4.A Respiratory nitrate reductase 1 alpha chain
Crystal Structure of NarGH complex

Seq Identity: 22.77%
Coverage

Biounit Oligo State	Hetero-octamer
QSQE	-
Method	X-ray, 2.00 Å
Seq Similarity	0.32
Coverage	0.82
Range	1-812

Ligand	Added to Model	Description
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
F3S	✕ - Binding site not conserved.	FE3-S4 CLUSTER
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD	✕ - Binding site not conserved.	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
MO	✕ - Binding site not conserved.	MOLYBDENUM ATOM
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State: Monomer
GMQE: 0.11
QMEANDisCo Global:: 0.32 ± 0.05

Ligands

QMEANDisCo Local

QMEAN Z-Scores

Template

2fug.2.C NADH-quinone oxidoreductase chain 3
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

Seq Identity: 17.10%
Coverage

Biounit Oligo State	Hetero-octamer
QSQE	0.00
Method	X-ray, 3.30 Å
Seq Similarity	0.27
Coverage	0.23
Range	367-722

Ligand	Added to Model	Description
FES	✕ - Binding site not conserved.	FE2/S2 (INORGANIC) CLUSTER
FES	✕ - Binding site not conserved.	FE2/S2 (INORGANIC) CLUSTER
FMN	✕ - Binding site not conserved.	FLAVIN MONONUCLEOTIDE
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER
SF4	✕ - Binding site not conserved.	IRON/SULFUR CLUSTER

Model-Template Alignment

13_July_SF_Bin2_scaffold_9994_c1_2-2545_1

Created: March 29, 2023, 7:37 p.m. at 19:37

Click model image to view in 3D

Click model image to view in 3D

13_July_SF_Bin2_scaffold_9994_c1_2-2545_1

Created: March 29, 2023, 7:37 p.m. at 19:37

Background

Resolution

Click model image to view in 3D

Click model image to view in 3D