Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

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3D Viewer
NGL PV

### 13_July_SF_Bin2_scaffold_20759_c1_1114-3024_1

### Created: March 29, 2023, 7:36 p.m. at 19:36

Order by:

Oligo-State
  Monomer
GMQE
  0.69
QMEANDisCo Global:
  0.64 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity
  41.23%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 2.97 Å
Seq Similarity | 0.40
Coverage | 0.97
Range | 1-624

Ligand | Added to Model | Description
--- | --- | ---
CA | ✕ - Binding site not conserved. | CALCIUM ION
CA | ✕ - Binding site not conserved. | CALCIUM ION
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
  (matching prediction)
GMQE
  0.41
QMEANDisCo Global:
  0.48 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
1r27.4.A Respiratory nitrate reductase 1 alpha chain
Crystal Structure of NarGH complex

Seq Identity
  21.88%
Coverage

Biounit Oligo State | Hetero-octamer
QSQE | -
Method | X-ray, 2.00 Å
Seq Similarity | 0.31
Coverage | 0.77
Range | 1-595

Ligand | Added to Model | Description
--- | --- | ---
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.28
QMEANDisCo Global:
  0.40 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7p63.1.C NADH-quinone oxidoreductase
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Closed state

Seq Identity
  12.82%
Coverage

Biounit Oligo State | Hetero-13-mer
QSQE | 0.00
Method | EM
Seq Similarity | 0.26
Coverage | 0.55
Range | 1-504

Ligand | Added to Model | Description
--- | --- | ---
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
CA | ✕ - Binding site not conserved. | CALCIUM ION
DCQ | ✕ - Binding site not conserved. | 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FMN | ✕ - Binding site not conserved. | FLAVIN MONONUCLEOTIDE
LFA | ✕ - Binding site not conserved. | EICOSANE
LFA | ✕ - Binding site not conserved. | EICOSANE
LFA | ✕ - Binding site not conserved. | EICOSANE
LFA | ✕ - Binding site not conserved. | EICOSANE
NAI | ✕ - Binding site not conserved. | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.14
QMEANDisCo Global:
  0.35 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2fug.2.C NADH-quinone oxidoreductase chain 3
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

Seq Identity
  18.56%
Coverage

Biounit Oligo State | Hetero-octamer
QSQE | 0.00
Method | X-ray, 3.30 Å
Seq Similarity | 0.28
Coverage | 0.31
Range | 144-505

Ligand | Added to Model | Description
--- | --- | ---
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FMN | ✕ - Binding site not conserved. | FLAVIN MONONUCLEOTIDE
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.13
QMEANDisCo Global:
  0.44 ± 0.06

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2ivf.1.A ETHYLBENZENE DEHYDROGENASE ALPHA-SUBUNIT
ETHYLBENZENE DEHYDROGENASE FROM AROMATOLEUM AROMATICUM

Seq Identity
  30.93%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 1.88 Å
Seq Similarity | 0.36
Coverage | 0.31
Range | 147-342

Ligand | Added to Model | Description
--- | --- | ---
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MES | ✕ - Binding site not conserved. | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
PO4 | ✕ - Not biologically relevant. | PHOSPHATE ION
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

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