Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

Background |  |  |

3D Viewer
NGL PV

### 4_1_Jan_SF_Bin21_scaffold_19364_c1:2-1714_1

### Created: March 29, 2023, 5:45 p.m. at 17:45

Order by:

Oligo-State
  Monomer
GMQE
  0.71
QMEANDisCo Global:
  0.69 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity
  39.29%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 2.97 Å
Seq Similarity | 0.39
Coverage | 0.93
Range | 28-567

Ligand | Added to Model | Description
--- | --- | ---
CA | ✕ - Binding site not conserved. | CALCIUM ION
CA | ✕ - Binding site not conserved. | CALCIUM ION
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.36
QMEANDisCo Global:
  0.46 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
1q16.1.A Respiratory nitrate reductase 1 alpha chain
Crystal structure of Nitrate Reductase A, NarGHI, from Escherichia coli

Seq Identity
  20.54%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 1.90 Å
Seq Similarity | 0.31
Coverage | 0.65
Range | 60-534

Ligand | Added to Model | Description
--- | --- | ---
3PH | ✕ - Not in contact with model. | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
6MO | ✕ - Binding site not conserved. | MOLYBDENUM(VI) ION
AGA | ✕ - Binding site not conserved. | (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.26
QMEANDisCo Global:
  0.43 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7p63.1.C NADH-quinone oxidoreductase
Complex I from E. coli, DDM/LMNG-purified, under Turnover at pH 6, Closed state

Seq Identity
  16.25%
Coverage

Biounit Oligo State | Hetero-13-mer
QSQE | 0.00
Method | EM
Seq Similarity | 0.27
Coverage | 0.49
Range | 60-441

Ligand | Added to Model | Description
--- | --- | ---
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
3PE | ✕ - Binding site not conserved. | 1,2-Distearoyl-sn-glycerophosphoethanolamine
CA | ✕ - Binding site not conserved. | CALCIUM ION
DCQ | ✕ - Binding site not conserved. | 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FMN | ✕ - Binding site not conserved. | FLAVIN MONONUCLEOTIDE
LFA | ✕ - Binding site not conserved. | EICOSANE
LFA | ✕ - Binding site not conserved. | EICOSANE
LFA | ✕ - Binding site not conserved. | EICOSANE
LFA | ✕ - Binding site not conserved. | EICOSANE
NAI | ✕ - Binding site not conserved. | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

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