Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

Background |  |  |

3D Viewer
NGL PV

### 4_1_May_SF_Bin52_scaffold_9609_c1_4099-4944_1

### Created: March 29, 2023, 8:38 p.m. at 20:38

Order by:

Oligo-State
  Monomer
GMQE
  0.70
QMEANDisCo Global:
  0.67 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity
  38.29%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 2.97 Å
Seq Similarity | 0.39
Coverage | 0.96
Range | 3-274

Ligand | Added to Model | Description
--- | --- | ---
CA | ✕ - Binding site not conserved. | CALCIUM ION
CA | ✕ - Binding site not conserved. | CALCIUM ION
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.08
QMEANDisCo Global:
  0.43 ± 0.11

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
3hu1.1.A Transitional endoplasmic reticulum ATPase
Structure of p97 N-D1 R95G mutant in complex with ATPgS

Seq Identity
  17.91%
Coverage

Biounit Oligo State | Homo-hexamer
QSQE | 0.00
Method | X-ray, 2.81 Å
Seq Similarity | 0.26
Coverage | 0.24
Range | 86-153

Ligand | Added to Model | Description
--- | --- | ---
AGS | ✕ - Binding site not conserved. | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
AGS | ✕ - Binding site not conserved. | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
AGS | ✕ - Binding site not conserved. | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
AGS | ✕ - Binding site not conserved. | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
AGS | ✕ - Binding site not conserved. | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
AGS | ✕ - Binding site not conserved. | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
MG | ✕ - Not in contact with model. | MAGNESIUM ION
MG | ✕ - Not in contact with model. | MAGNESIUM ION
MG | ✕ - Not in contact with model. | MAGNESIUM ION
MG | ✕ - Not in contact with model. | MAGNESIUM ION
MG | ✕ - Not in contact with model. | MAGNESIUM ION
MG | ✕ - Not in contact with model. | MAGNESIUM ION

Model-Template Alignment

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