Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

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NGL PV

### 13_July_SF_Bin2_scaffold_7244_c1_4398-5624_1

### Created: March 29, 2023, 7:37 p.m. at 19:37

Order by:

Oligo-State
  Monomer
GMQE
  0.68
QMEANDisCo Global:
  0.66 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity
  45.15%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 2.97 Å
Seq Similarity | 0.43
Coverage | 0.96
Range | 30-396

Ligand | Added to Model | Description
--- | --- | ---
CA | ✕ - Binding site not conserved. | CALCIUM ION
CA | ✕ - Binding site not conserved. | CALCIUM ION
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.41
QMEANDisCo Global:
  0.46 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
1e5v.2.A Dimethyl sulfoxide/trimethylamine N-oxide reductase
OXIDIZED DMSO REDUCTASE EXPOSED TO HEPES BUFFER

Seq Identity
  24.29%
Coverage

Biounit Oligo State | Monomer
QSQE | 0.00
Method | X-ray, 2.40 Å
Seq Similarity | 0.31
Coverage | 0.78
Range | 56-408

Ligand | Added to Model | Description
--- | --- | ---
2MO | ✕ - Binding site not conserved. | MOLYBDENUM (IV)OXIDE
PGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
PGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
SO4 | ✕ - Not biologically relevant. | SULFATE ION

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.39
QMEANDisCo Global:
  0.45 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
3ir5.1.A Respiratory nitrate reductase 1 alpha chain
Crystal structure of NarGHI mutant NarG-H49C

Seq Identity
  30.49%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 2.30 Å
Seq Similarity | 0.37
Coverage | 0.75
Range | 42-382

Ligand | Added to Model | Description
--- | --- | ---
6MO | ✕ - Binding site not conserved. | MOLYBDENUM(VI) ION
AGA | ✕ - Binding site not conserved. | (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.30
QMEANDisCo Global:
  0.43 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7l5i.1.A Trimethylamine-N-oxide reductase
Crystal Structure of Haemophilus influenzae MtsZ at pH 7.0

Seq Identity
  25.73%
Coverage

Biounit Oligo State | Monomer
QSQE | 0.00
Method | X-ray, 1.73 Å
Seq Similarity | 0.35
Coverage | 0.59
Range | 77-377

Ligand | Added to Model | Description
--- | --- | ---
CL | ✕ - Not biologically relevant. | CHLORIDE ION
EPE | ✕ - Not biologically relevant. | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
EPE | ✕ - Not biologically relevant. | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
EPE | ✕ - Not biologically relevant. | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
O | ✕ - Binding site not conserved. | OXYGEN ATOM

Model-Template Alignment

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