Export Alignment
Secondary Structure
None DSSP PSIPRED SSpro
Colour Scheme
Fade Mismatches Enhance Mismatches
Confidencegradient Confidenceclass Indels Chain Unique Chain Rainbow 2° Structure Clustal Hydrophobic Size Charged Polar Proline Ser/Thr Cysteine Aliphatic Aromatic No Colour
Use QMEANBrane values

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NGL PV

### 21_Jan_SF_Bin67_scaffold_32672_c1:3-2330_1

### Created: March 29, 2023, 6:30 p.m. at 18:30

Order by:

Oligo-State
  Monomer
GMQE
  0.81
QMEANDisCo Global:
  0.78 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
7b04.1.B Nitrite oxidoreductase subunit A
Structure of Nitrite oxidoreductase (Nxr) from the anammox bacterium Kuenenia stuttgartiensis.

Seq Identity
  53.57%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 2.97 Å
Seq Similarity | 0.46
Coverage | 1.00
Range | 1-772

Ligand | Added to Model | Description
--- | --- | ---
CA | ✕ - Binding site not conserved. | CALCIUM ION
CA | ✕ - Binding site not conserved. | CALCIUM ION
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.40
QMEANDisCo Global:
  0.45 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
3ir7.1.A Respiratory nitrate reductase 1 alpha chain
Crystal structure of NarGHI mutant NarG-R94S

Seq Identity
  22.74%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 2.50 Å
Seq Similarity | 0.31
Coverage | 0.80
Range | 1-739

Ligand | Added to Model | Description
--- | --- | ---
6MO | ✕ - Binding site not conserved. | MOLYBDENUM(VI) ION
AGA | ✕ - Binding site not conserved. | (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.21
QMEANDisCo Global:
  0.37 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2ivf.1.A ETHYLBENZENE DEHYDROGENASE ALPHA-SUBUNIT
ETHYLBENZENE DEHYDROGENASE FROM AROMATOLEUM AROMATICUM

Seq Identity
  32.76%
Coverage

Biounit Oligo State | Hetero-trimer
QSQE | 0.00
Method | X-ray, 1.88 Å
Seq Similarity | 0.36
Coverage | 0.53
Range | 1-473

Ligand | Added to Model | Description
--- | --- | ---
ACT | ✕ - Not biologically relevant. | ACETATE ION
ACT | ✕ - Not biologically relevant. | ACETATE ION
F3S | ✕ - Binding site not conserved. | FE3-S4 CLUSTER
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
GOL | ✕ - Not biologically relevant. | GLYCEROL
HEM | ✕ - Binding site not conserved. | PROTOPORPHYRIN IX CONTAINING FE
MD1 | ✕ - Binding site not conserved. | PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER
MES | ✕ - Binding site not conserved. | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
MGD | ✕ - Binding site not conserved. | 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
MO | ✕ - Binding site not conserved. | MOLYBDENUM ATOM
PO4 | ✕ - Not biologically relevant. | PHOSPHATE ION
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

Oligo-State
  Monomer
GMQE
  0.12
QMEANDisCo Global:
  0.33 ± 0.05

Ligands

QMEANDisCo Local
QMEAN Z-Scores

Template
2fug.2.C NADH-quinone oxidoreductase chain 3
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus

Seq Identity
  16.58%
Coverage

Biounit Oligo State | Hetero-octamer
QSQE | 0.00
Method | X-ray, 3.30 Å
Seq Similarity | 0.27
Coverage | 0.25
Range | 296-649

Ligand | Added to Model | Description
--- | --- | ---
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FES | ✕ - Binding site not conserved. | FE2/S2 (INORGANIC) CLUSTER
FMN | ✕ - Binding site not conserved. | FLAVIN MONONUCLEOTIDE
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER
SF4 | ✕ - Binding site not conserved. | IRON/SULFUR CLUSTER

Model-Template Alignment

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