{"text_format":"3","workbook":"xls","n_sheets":5,"sheets":["Table_S1","Table_S2","Table_S3","Table_S4","Table_S5"],"read":"whole","date_system":"1900","formulas":"cached_only"}

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["SD cluster ","cSDP","Type","Cluster","Block1","Block2","Block3","Block4","Block5","Block6","Block7","Block8","Block9","Block10","Block11","Block12","Block13","Block14"]
[1,"cSDP1","ancestral","chr9:83,808,961-83,916,090","chr9:83,808,961-83,822,003","chr9:83,826,071-83,877,281","chr9:83,877,283-83,916,090","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr9:85,746,677-85,852,545","chr9:85,801,138-85,815,463","chr9:85,746,677-85,797,070","chr9:85,815,464-85,852,545","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",103610,14540,51668,37402,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",4621,1711,1731,1179,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",96764,12517,48824,35423,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9775227550535918,"d":"0.9775"},{"v":0.9756800997739496,"d":"0.9757"},{"v":0.9777119170154395,"d":"0.9777"},{"v":0.9779145846561577,"d":"0.9779"},"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[2,"cSDP2","ancestral","chr9:94,306,787-94,438,761","chr9:94,306,787-94,360,500","chr9:94,360,499-94,438,761","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr9:96,897,114-97,027,490","chr9:96,897,114-96,949,329","chr9:96,949,328-97,027,490","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",132452,53846,78606,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",2550,1762,788,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",128610,51641,76969,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9900540407384028,"d":"0.9901"},{"v":0.9914945088702865,"d":"0.9915"},{"v":0.9890899277802051,"d":"0.9891"},"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[3,"cSDP3","ancestral","chr1:242,967,961-243,212,177","chr1:242,967,961-243,017,216","chr1:243,017,220-243,087,501","chr1:243,092,805-243,101,824","chr1:243101,898-243,212,177","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr4:118,418,033-118,671,407","chr4:118,418,033-118,467,375","chr4:118,600,193-118,671,407","chr4:118,591,679-118,600,398","chr4:118,467,377-118,578,683","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",241812,49478,71625,9059,111650,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",4201,357,1753,378,1713,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",233242,48296,68164,8521,108261,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9816128041210214,"d":"0.9816"},{"v":0.9832047393171963,"d":"0.9832"},{"v":0.9755553011220518,"d":"0.9756"},{"v":0.9815689436700841,"d":"0.9816"},{"v":0.9847549050820015,"d":"0.9848"},"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[4,"cSDP4","ancestral","chr7:102,526,990-102,609,908","chr7:102,526,990-102,595,366","chr7:102,595,370-102,601,132","chr7:102,602,986-102,609,908","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr7:43,961,331-44,041,894","chr7:43,973,537-44,041,894","chr7:43,961,331-43,967,139","chr7:43,966,865-43,973,777","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",81601,68845,5819,6937,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",1059,955,66,38,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",79379,66933,5648,6798,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9855603287725658,"d":"0.9856"},{"v":0.9859036676977464,"d":"0.9859"},{"v":0.9817486528767599,"d":"0.9817"},{"v":0.9853601971300189,"d":"0.9854"},"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[5,"cSDP5","ancestral","chr5:20,695,219-20,945,818","chr5:20,695,219-20,795,934","chr5:20,795,929-20,945,818","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr5:34,066,025-34,407,995","chr5:34,066,025-34,173,669","chr5:34,256,269-34,407,995","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",259251,107032,152219,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",12125,7068,5057,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",243419,98465,144954,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9849995548829342,"d":"0.9850"},{"v":0.9850046016565964,"d":"0.9850"},{"v":0.984996126717495,"d":"0.9850"},"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"ancestral","chrX:89,201,803-93,120,510","chrX:89,201,803-89,355,307","chrX:89,339,580-89,372,628","chrX:89,373,656-89,394,413","chrX:89,394,405-89,732,547","chrX:89,7428,14-90,000,000","chrX:90,095,778-90,275,030","chrX:90,276,318-90,909,509","chrX:90,909,510-90,927,209","chrX:90,927,208-91,032,371","chrX:91,143,609-91,255,742","chrX:91,479,251-91,715,634","chrX:91,740,847-92,172,868","chrX:92,283,925-92,352,305","chrX:92,352,304-93,120,510"]
[null,null,"derivative","chrY:3,049,918-6,748,559","chrY:6,532,795-6,691,110","chrY:6,691,107-6,724,154 ","chrY:6,727,806-6,748,559 ","chrY:3,049,918-3,390,556 ","chrY:3,390,565-3,657,611 ","chrY:3,665,866-3,844,209 ","chrY:3,853,084-4,483,712","chrY:4,485,641-4,503,323 ","chrY:4,503,653-4,607,403  ","chrY:4,607,403-4,720,620 ","chrY:4,720,626-4,960,524 ","chrY:4,961,295-5,398,165 ","chrY:5,398,170-5,466,385 ","chrY:5,464,147-6,234,575 "]
[6,"cSDP6","alignment length",3394451,161079,33134,20810,341557,260778,179027,632151,17730,105723,113866,243867,438276,68527,777926]
[null,null,"indels bp",81341,10337,171,108,9519,4244,1793,9672,77,2531,2380,11453,7661,457,20938]
[null,null,"Matching bases",3270389,148486,32623,20489,326284,253433,175063,614545,17468,102036,110122,229563,425420,67115,747742]
[null,null,"Match fraction",{"v":0.9871054688796931,"d":"0.9871"},0.985,0.9897,0.9897,0.9827,0.9879,0.9878,0.9873,0.9895,0.9888,0.9878,0.9877,0.9879,0.986,0.9878]
[7,"cSDP7","ancestral","chr2:77,667,064-77,689,855","chr2:77,667,064-77,674,169","chr2:77,674,171-77,689,855","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr2:87,094,932-87,118,481","chr2:87,111,047-87,118,481","chr2:87,094,932-87,111,045  ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",23572,7439,16133,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",804,337,467,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",22631,7072,15559,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9939827828531272,"d":"0.9940"},{"v":0.9957758377921713,"d":"0.9958"},0.9932,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[8,"cSDP8","ancestral","chr7:5,246,145-5,329,481","chr7:5,246,145-5,294,854","chr7:5,295,602-5,329,481","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative (1)","chr7: 56,937,324-57,021,597","chr7:56,937,324-56,987,687 ","chr7:56,987,686-57,021,597","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length (1)",82642,48219,34423,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp (1)",3690,2636,1054,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases (1)",78160,46219,31941,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction (1)",0.9578,0.9585,0.9572,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative (2)","chr7:63,555,272-63,639,630","chr7:63,589,270-63,639,630  ","chr7:63,555,272-63,589,271 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length (2)",85305,50850,34455,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp (2)",3665,2635,1030,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases (2)",78189,46194,31995,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction (2)",{"v":0.9577290543851054,"d":"0.9577"},0.9581,0.9572,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[9,"cSDP9","ancestral","chr2:108,650,579-108,691,497","chr2:108,650,579-108,687,692","chr2:108,687,762-108,691,497","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative (1)","chr2:109,790,458-109,926,072","chr2:109,894,244-109,926,072  "," chr2:109,790,458-109,794,200 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length (1)",35673,31927,3746,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp (1)",222,209,13,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases (1)",34957,31276,3681,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction (1)",{"v":0.9860652731939861,"d":"0.9861"},0.9861,0.9861,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative (2)","chr2:110,445,436-110,581,032","chr2:110,445,436-110,477,263  "," chr2:110,577,290-110,581032","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length (2)",35673,31927,3746,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp (2)",223,210,13,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases (2)",34952,31271,3681,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction (2)",{"v":0.9859520451339915,"d":"0.9860"},0.9859,0.9861,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[10,"cSDP10","ancestral","chr5:214,228-305,378"," chr5:214,228-218,792","chr5:235,692-259,212"," chr5:261,073-263,958","chr5:265,981-286,514"," chr5:288,121-305,378","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr5:1,568,347-1,636,124","chr5:1,594,028-1,600,752","chr5:1,569,858-1,594,024 "," chr5:1,568,347-1,571,219","chr5:1,618,531-1,636,214     ","chr5:1,601,535-1,616,995","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",71993,6805,26187,2890,18760,17351,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",11668,2320,4686,21,2658,1983,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",57125,4314,20566,2648,14689,14908,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9469539991711562,"d":"0.9470"},0.9619,0.9565,0.923,0.9122,0.9701,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[11,"cSDP11","ancestral","chr17:68,187,981-68,272,653"," chr17:68,187,981-68,192,027","chr17:68,219,135-68,272,653 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr17:64,948,098-65,005,097","chr17:64,948,098-64,952,796","chr17:64,952,801-65,005,097","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",59258,5039,54219,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",5496,1332,4164,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",50624,3502,47122,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9416316357278375,"d":"0.9416"},0.9447,0.9414,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[12,"cSDP12","ancestral","chr6:5,578,080-5,861,880","chr6:5,578,080-5,593,857","chr6:5,693,576-5,721,921","chr6:5,788,600-5,809,770","chr6:5,809,774-5,861,880","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr13:21,197,656-21,366,004","chr13:21,242,698-21,259,567","chr13:21,216,659-21,242,699","chr13:21,197,656-21,216,652"," chr13:21,315,406-21,366,004 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",117313,17914,26316,19549,53534,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",13769,3180,1324,2239,7026,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",96820,13695,23241,16296,43588,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9350614231630997,"d":"0.9351"},0.9295,0.9299,0.9414,0.9372,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[13,"N/A","Duplication 1","chr1:46,838,545-46,950,355","chr1:46,838,545-46,900,684"," chr1:46,921,732-46,950,355","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","chr1:47,067,240-47,157,145","chr1:47,067,240-47,122,930  ","chr1:47,127,553-47,157,145","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",92867,63119,29748,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",9686,8407,1279,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",79389,52111,27278,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9544126663540953,"d":"0.9544"},0.9525,0.9582,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[14,"N/A","Duplication 1","chr12:31,042,402-31,201,044","chr12:31,042,402-31,107,937","chr12:31,108,624-31,180,230","chr12:31,180,853-31,201,044","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","chr12:9,414,549-9,579,296","chr12:9,414,549-9,480,087","chr12:9,510,412-9,579,296 ","chr12:9,480,091-9,505,503","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",158240,66167,71827,20246,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",4568,1259,3162,147,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",150814,63655,67337,19822,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9814019470040085,"d":"0.9814"},0.9807,0.9807,0.9862,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[15,"N/A","Duplication 1","chr16:14,749,156-14,954,790","chr16:14,749,156-14,816,375","chr16:14,816,373-14,954,790","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","chr16:16,215,114-16,443,864","chr16:16,377,570-16,443,864 "," chr16:16,215,114-16,353,400 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length ",206537,67559,138978,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp ",2856,1605,1251,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases ",202256,65326,136930,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction ",{"v":0.9930037656924308,"d":"0.9930"},0.9905,0.9942,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 1 *","chr16:14,749,156-14,954,790","chr16:14,749,156-14,816,375"," chr16:14,816,373-14,909,607"]
[null,null,"Duplication 3","chr16:18,268,082-18,579,544 ","chr16:18,268,082-18,334,337","chr16:18,486,487-18,579,544 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length ",161225,67567,93658,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp ",2681,1658,1023,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",157299,65295,92004,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction ",{"v":0.9921472903421132,"d":"0.9921"},0.9907,0.9932,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[16,"N/A","Duplication 1","   chr7:74,728,174-74,984,489","chr7:74,728,174-74,869,950","chr7:74,869,960-74,920,464","chr7:74,925,884-74,984,489","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","   chr7:75,074,151-75,379,886","chr7:75,074,151-75,217,878 ","chr7:75,329,973-75,379,886","chr7:75,217,889-75,276,421","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length ",254334,143917,50772,59645,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp ",5605,2329,1125,2151,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases ",247713,141134,49335,57244,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction ",{"v":0.9959152330447998,"d":"0.9959"},0.9968,0.9937,0.9957,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 1 *","   chr7:74,728,174-74,984,489","chr7:74,728,174-74,833,380","chr7:74,869,960-74,920,464","chr7:74,925,884-74,984,489","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 3"," chr7:72,985,213-73,280,573","chr7:73,174,795-73,280,573 ","chr7:72,985,213-73,035,169 ","chr7:73,117,071-73,174,784  ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length ",215678,106005,50833,58840,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp ",3590,1026,1204,1360,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",211004,104494,49299,57211,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction ",{"v":0.9948889140356832,"d":"0.9949"},0.9954,0.9934,0.9953,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[17,"cSDP13","ancestral "," chr8:230,496-330,244","chr8:230,497-236,239","chr8:290,490-330,244","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative"," chr1:823,659-867,135","chr1:823,660-829,411 ","chr1:829,412-867,135 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",45813,5758,40055,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",2652,21,2631,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",42325,5661,36664,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.98325,"d":"0.9833"},0.9868,0.9797,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[18,"cSDP14","ancestral","chr2:232,329,018-232,365,938","chr2:232329019-232339498","chr2:232364863-232365938","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr2:232,439,848-232,450,239","chr2:232441283-232450239 ","chr2:232439849-232440924  ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",10811,9728,1083,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",913,899,14,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",9258,8263,995,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9333499999999999,"d":"0.9334"},0.9359,0.9308,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[19,"cSDP15","ancestral","chr4:165,211,303-165,287,402","chr4:165,211,303-165,216,617","chr4:165,217,673-165,287,402","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr4:119,332,070-119,471,276","chr4:119,465,960-119,471,276 ","chr4:119,332,070-119,403,072 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",77662,5324,72338,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",3959,16,3943,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",72119,5210,66909,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",0.9799,0.9815,0.9783,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[20,"cSDP16","ancestral","chr15:75,680,779-75,738,232 ","chr15:75,680,780-75,693,392","chr15:75,697,887-75,717,575","chr15:75,728,340-75,736,396","chr15:75,736,398-75,738,232","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"derivative","chr15:77,868,292-77,908,102","chr15:77,894,526-77,906,195  ","chr15:77,875,460-77,894,171 ","chr15:77,868,293-77,875,462 ","chr15:77,906,296-77,908,102  ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",42179,12802,19209,8326,1842,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",4101,1321,1313,1425,42,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",36457,10918,17346,6471,1722,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.952725,"d":"0.9527"},0.9472,0.9693,0.9377,0.9567,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[21,"N/A","Duplication 1","chr3:130,093,222-130,132,698","chr3:130,093,223-130,117,051","chr3:130,117,051-130,132,698","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","chr8:12,210,128-12,441,886","chr8:12,419,844-12,441,886   ","chr8:12,210,129-12,234,345 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",48241,23975,24266,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",10745,2078,8667,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",35722,20852,14870,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",0.9499,0.9495,0.9503,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[22,"N/A","Duplication 1","chr4:68,831,153-68,834,991","chr4:68,831,154-68,832,948","chr4:68,832,980-68,834,991","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","chr4:68,974,636-68,982,498","chr4:68,980,701-68,982,498 ","chr4:68,974,637-68,976,637 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",3826,1812,2014,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",46,31,15,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",3552,1680,1872,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",0.9356,0.938,0.9332,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[23,"N/A","Duplication 1","chr7:144,180,402-144,254,793","chr7:144,180,403-144,186,940","chr7:144,186,949-144,254,793","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","chr7:144,265,814-144,364,104","chr7:144,265,815-144,272,351 ","chr7:144,296,183-144,364,104 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",74490,6538,67952,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",138,1,137,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",74175,6524,67651,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.9975499999999999,"d":"0.9976"},0.9979,0.9972,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[24,"N/A","Duplication 1","chr16:29,588,679-30,316,708","chr16:29,588,019-29,615,818 ","chr16:30,275,057-30,316,708 ","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Duplication 2","chr16:21,453,125-21,522,550","chr16:21,494,594-21,522,550","chr16:21,453,126-21,495,280","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"alignment length",70898,28230,42668,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"indels bp",2234,705,1529,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Matching bases",67263,26925,40338,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[null,null,"Match fraction",{"v":0.97715,"d":"0.9772"},0.9759,0.9784,"N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A","N/A"]
[]
["Table S1. Genomic coordinates of duplicated SD clusters and blocks and identity percentage between duplicates. * Duplication 1 in SD clusters 15 and 16 is present twice because there are SD blocks with different sizes between duplication 2 and duplication. "]

{"sheet":"Table_S2","index":1,"n_rows":71,"n_cols":25,"rows_kept":71,"merged":[[53,1,53,24]],"flags":["formulas_cached_only"]}
["A",null,"cSDP ancestral","Corresponding Chomosome"]
["cSDP","chr","Ratio repetitive element size/SD size","Ratio repetitive element size/chr size"]
["cSDP1","chr9",0.509,{"v":0.454973400465857,"d":"0.455"}]
["cSDP2","chr9",0.617,{"v":0.454973400465857,"d":"0.455"}]
["cSDP3","chr1",0.445,{"v":0.478906292282751,"d":"0.479"}]
["cSDP4","chr7",0.496,{"v":0.511994677141919,"d":"0.512"}]
["cSDP5","chr5",0.564,{"v":0.514056643013195,"d":"0.514"},{"$nulls":14},{"v":0.478906292282751,"d":"0.479"}]
["cSDP6","chrX",0.698,{"v":0.617501995230161,"d":"0.618"},{"$nulls":14},{"v":0.488831516221063,"d":"0.489"}]
["cSDP7","chr2",0.515,{"v":0.488831516221063,"d":"0.489"},{"$nulls":14},{"v":0.513145833992177,"d":"0.513"}]
["cSDP8","chr7",0.564,{"v":0.511994677141919,"d":"0.512"},{"$nulls":14},{"v":0.516097498427499,"d":"0.516"}]
["cSDP9","chr2",0.467,{"v":0.488831516221063,"d":"0.489"},{"$nulls":14},{"v":0.514056643013195,"d":"0.514"}]
["cSDP10","chr5",0.425,{"v":0.514056643013195,"d":"0.514"},{"$nulls":14},{"v":0.49840640531676,"d":"0.498"}]
["cSDP11","chr17",0.473,{"v":0.51764353410766,"d":"0.518"},{"$nulls":14},{"v":0.511994677141919,"d":"0.512"}]
["cSDP12","chr6",0.407,{"v":0.49840640531676,"d":"0.498"},{"$nulls":14},{"v":0.512023896931207,"d":"0.512"}]
["cSDP13","chr8",0.347,{"v":0.512023896931207,"d":"0.512"},{"$nulls":14},{"v":0.454973400465857,"d":"0.455"}]
["cSDP14","chr2",0.376,{"v":0.488831516221063,"d":"0.489"},{"$nulls":14},{"v":0.496979642851415,"d":"0.497"}]
["cSDP15","chr4",0.451,{"v":0.516097498427499,"d":"0.516"},{"$nulls":14},{"v":0.524074049316297,"d":"0.524"}]
["cSDP16","chr15",0.244,{"v":0.426527462092828,"d":"0.427"},{"$nulls":14},{"v":0.52918282860631,"d":"0.529"}]
[]
["Table S3.  Ratio of repetitive elements content size versus total size of cSDPs or  corresponding chromosomes",{"$nulls":17},0.426527462092828]
[{"$nulls":18},{"v":0.468436930076591,"d":"0.468"}]
[{"$nulls":18},{"v":0.51764353410766,"d":"0.518"}]
[{"$nulls":18},{"v":0.507748190210217,"d":"0.508"}]
["B",{"$nulls":17},{"v":0.595024949496411,"d":"0.595"}]
["Chr","ChrLenght","RepLength","Ratio",{"$nulls":14},{"v":0.530809266259893,"d":"0.531"}]
["chr1",248956422,119226797,{"v":0.478906292282751,"d":"0.479"},{"$nulls":14},{"v":0.443204186137255,"d":"0.443"}]
["chr2",242193529,118391830,{"v":0.488831516221063,"d":"0.489"},{"$nulls":14},{"v":0.41195114343077,"d":"0.412"}]
["chr3",198295559,101754540,{"v":0.513145833992177,"d":"0.513"},{"$nulls":14},{"v":0.617501995230161,"d":"0.618"}]
["chr4",190214555,98169256,{"v":0.516097498427499,"d":"0.516"},{"$nulls":14},{"v":0.289182466130962,"d":"0.289"}]
["chr5",181538259,93320948,{"v":0.514056643013195,"d":"0.514"}]
["chr6",170805979,85130794,{"v":0.49840640531676,"d":"0.498"}]
["chr7",159345973,81584290,{"v":0.511994677141919,"d":"0.512"}]
["chr8",145138636,74314450,{"v":0.512023896931207,"d":"0.512"}]
["chr9",138394717,62965915,{"v":0.454973400465857,"d":"0.455"}]
["chr10",133797422,66494595,{"v":0.496979642851415,"d":"0.497"}]
["chr11",135086622,70795393,{"v":0.524074049316297,"d":"0.524"}]
["chr12",133275309,70527005,{"v":0.52918282860631,"d":"0.529"}]
["chr13",114364328,48205264,{"v":0.421506118586208,"d":"0.422"}]
["chr14",107043718,46816423,{"v":0.437357968078052,"d":"0.437"}]
["chr15",101991189,43502043,{"v":0.426527462092828,"d":"0.427"}]
["chr16",90338345,42317817,{"v":0.468436930076591,"d":"0.468"}]
["chr17",83257441,43097676,{"v":0.51764353410766,"d":"0.518"}]
["chr18",80373285,40809390,{"v":0.507748190210217,"d":"0.508"}]
["chr19",58617616,34878944,{"v":0.595024949496411,"d":"0.595"}]
["chr20",64444167,34207561,{"v":0.530809266259893,"d":"0.531"}]
["chr21",46709983,20702060,{"v":0.443204186137255,"d":"0.443"}]
["chr22",50818468,20934726,{"v":0.41195114343077,"d":"0.412"}]
["chrX",156040895,96355564,{"v":0.617501995230161,"d":"0.618"}]
["chrY",57227415,16549165,{"v":0.289182466130962,"d":"0.289"}]
[]
[]
[]
[]
["C","ANCESTRAL"]
["cSDP","chr","start","end","Repetitive Elements","Repetitive Elements Size (bp)","Block Size (bp)","Ratio","DNA","LINE","Low_complexity","LTR","Simple_repeat","SINE","LTR?","Retroposon","snRNA","Unknown","DNA?","rRNA","srpRNA","tRNA","Satellite","RC","RC?"]
["cSDP1","chr9",83808961,83916090,221,54554,107130,0.5092318,26,64,3,10,29,89,0,0,0,0,0,0,0,0,0,0,0]
["cSDP2","chr9",94306787,94438761,334,81525,131975,0.6177306,27,97,0,29,25,156,0,0,0,0,0,0,0,0,0,0,0]
["cSDP3","chr1",242967961,243212177,495,108758,244217,0.4453335,38,114,9,71,54,205,2,1,1,0,0,0,0,0,0,0,0]
["cSDP4","chr7",102526990,102609908,217,41166,82919,0.4964604,11,19,5,12,19,151,0,0,0,0,0,0,0,0,0,0,0]
["cSDP5","chr5",20695219,20945818,429,141389,250600,0.5642019,24,127,6,125,81,63,1,0,1,1,0,0,0,0,0,0,0]
["cSDP6","chrX",89201803,93120510,5617,2737228,3918708,0.6985027,291,2138,89,1417,715,947,5,4,3,1,2,3,1,1,0,0,0]
["cSDP7","chr2",77667064,77689855,37,11755,22792,0.5157511,7,14,1,8,3,3,0,0,0,0,0,0,0,1,0,0,0]
["cSDP8","chr7",5246145,5329481,233,47043,83337,0.5644912,7,31,3,23,24,144,0,1,0,0,0,0,0,0,0,0,0]
["cSDP9","chr2",108650579,108691497,76,19123,40919,0.4673379,17,12,1,6,5,35,0,0,0,0,0,0,0,0,0,0,0]
["cSDP10","chr5",214228,305378,193,38756,91151,0.4251846,40,39,0,40,10,48,0,0,0,1,0,0,0,0,15,0,0]
["cSDP11","chr17",68187981,68272653,183,40086,84673,0.4734213,13,42,4,10,22,88,3,0,1,0,0,0,0,0,0,0,0]
["cSDP12","chr6",5578080,5861880,467,115555,283801,0.4071691,43,128,9,69,64,150,1,1,0,0,0,1,0,0,0,1,0]
["cSDP13","chr8",230496,330244,121,34688,99749,0.3477529,6,32,2,33,21,27,0,0,0,0,0,0,0,0,0,0,0]
["cSDP14","chr2",232329018,232365938,40,13907,36921,0.3766691,2,8,0,10,10,10,0,0,0,0,0,0,0,0,0,0,0]
["cSDP15","chr4",165211303,165287402,123,34383,76100,0.4518134,13,39,2,7,20,40,1,0,1,0,0,0,0,0,0,0,0]
["cSDP16","chr15",75680779,75738232,91,14070,57454,0.2448916,8,16,3,7,10,47,0,0,0,0,0,0,0,0,0,0,0]

{"sheet":"Table_S3","index":2,"n_rows":12,"n_cols":5,"rows_kept":12,"merged":[[0,0,1,0],[0,1,0,2],[0,3,0,4],[11,0,11,4]],"flags":["formulas_cached_only"]}
["cSDP","Integration circular intermediate",null,"Closure circular intermediate"]
[null,"Opening site (BC junction)","Acceptor site (αβ junction)","Ancestral cSDP 5’ end (A)","Ancestral cSDP 3’ end (D)"]
["cSDP1","L1MA7_3end#LINE/L1 (96.30%)","No repetitive elements (84.43%)","MLT1I#LTR/ERVL-MaLR (48.65%)","AluSx1#SINE/Alu      (44.46%)"]
["cSDP2","L2a_3end#LINE/L2    (40.02%)","No repetitive elements (88.87%)","L1M5_orf2#LINE/L1 (74.33%)","No repetitive elements (36.26%)"]
["cSDP3","No repetitive elements (6.30%)","L2b_3end#LINE/L2 m (54.56%)","No repetitive elements (46.45%)","No repetitive elements (34.37%)"]
["cSDP4","No repetitive elements (32.90%)","MER51A#LTR/ERV1        (97.11 %)","N/A","N/A"]
["cSDP5","MER50#LTR/ERV1           (99.20 %)","L1PA16_3end#LINE/L1 (88.16%)","N/A","N/A"]
["cSDP6","L1PB1_3end#LINE/L1  (76.64%)","L1P3_orf2#LINE/L1       (100%)","N/A","N/A"]
["cSDP7","N/A","N/A","L1M3_orf2#LINE/L1  (87.10%)","L1MEb_5end#LINE/L1 (98.80%)"]
["cSDP8","N/A","N/A","No repetitive elements (39.16%)","AluSx1#SINE/ Alu     (71.63%)"]
[]
["Table S2. Repetitive elements overlapping the closing, opening and insertion breaking junctions during the formation and integration of the circular intermediates. Percentage of repetitive elements in 500 bp of sequence flanking each side of the respective junction are shown in parenthesis and in bold numbers."]

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["cSDP","Type","Name","Type","Included in cSDP","Exons included in cSDP blocks (number of exons)","Evolutionary situation","Description","Blocks","Paralog Genes"]
["cSDP1","anc","KIF27","protein coding","partial","exons 2-18","ancestral","G kinase anchoring protein 1","cSDP1_anc_B2 (Exon 12-18) - B3 (Exon 2-11)","KIF27"]
[null,null,"GKAP1","protein coding","partial","exons 1-2",null,"kinesin family member 27","cSDP1_anc_B1 (Exon 1-2)","GKAP1"]
[null,"der","LOC389765","pseudogenes","complete","all (7)","fusion derivated from  GKAP1 (exon 1) and KIF27 (exons 2-9)","kinesin family member 27 pseudogene","cSDP1_der_B1 (Exon 1) - B3 (Exon 2-9)"]
[null,null,"AK124523","mRNA","complete","all (8)","derivated from KIF27 (exons 4-11)","Homo sapiens cDNA FLJ42532 fis, clone BRACE3003004","cSDP_der_B3"]
[null,null,"RP11-213G2.1","unprocessed pseudogene","complete","all (7)","derivated from KIF27 (exons 12-18)","unprocessed pseudogene. tslNA. ENST00000422653.1","cSDP_der_B3"]
["cSDP2","anc","NUTM2F","protein coding","complete","all (7)","ancestral","NUT family member 2F","cSDP2_anc_B1","NUTM2F"]
[null,null,"LOC100132077","RNA gene","complete","all (3)",null,"ncRNA","cSDP2_anc_B1 (Exon 1-3) - B2 (Exon 3)"]
[null,null,"HIATL1","protein coding","partial","exons 1-4",null,"Hippocampus Abundant Transcript-Like Protein 1","cSDP2_anc_B2 (Exon 1-4)","HIATL1"]
[null,"der","NUTM2G","protein coding","complete","all (7)","derivated from NUTM2F (all exons)","NUT family member 2G, transcript variant 2","cSDP2_der_B1","NUTM2G"]
[null,null,"HIATL2","protein coding","complete","all (5)","derivated from HIATL1 (exons 1-4)","Hippocampus Abundant Transcript-Like Protein 2","cSDP2_der_B1 (Exon 5) - B2 (Exon 1-4)","HIATL2"]
[null,null,"MFSCD14C","protein coding","complete","all (7)","fusion derivated from HIATL1 (exons 1-4) and LOC100132077 (all exons)","Major Facilitator Superfamily Domain Containing 14C. nonsense mediated decay. tslNA. ENST00000647176.1","cSDP2_der_B1 (Exon 5-7) - B2 (Exon 1-4)"]
["cSDP3","anc","LINC01347","RNA gene","complete","all (3)","ancestral","long intergenic non-protein coding RNA 1347","cSDP3_anc_B1"]
[null,null,"CEP170","protein coding","partial","exons 4-20",null,"centrosomal protein 170","cSDP3_anc_B4 (Exon 4-20)","CEP170 "]
[null,"der","CEP170P1","pseudogene","complete","all (17)","derivated from CEP170 (exons 4-20)","centrosomal protein 170 pseudogene 1","cSDP3_der_B4"]
[null,null,"LOC729218","pseudogene","complete","all (10)","novel noncoding","uncharacterized","cSDP3_der_B2 (Exon 4-10) - B3 (Exon 1-3)"]
[null,null,"LOC101929741","RNA gene","partial","exon 7","novel noncoding","ncRNA","cSDP3_der_B2 (Exon 7)"]
["cSDP4","anc","SPDYE2","protein coding","complete","all (9)","ancestral","Homo sapiens speedy/RINGO cell cycle regulator family member E2 ","CSDP4_anc_B1","SPDYE2"]
[null,null,"RASA4","protein coding","partial","exons 3-5 and 7-20",null,"RAS p21 Protein Activator","CSDP4_anc_B1 (Exon 11-20) - B2 (Exon 7-10) - B3 (Exon 3-5)","RASA4"]
[null,null,"POLR2J3","protein coding","complete","all (4)",null,"Homo sapiens polymerase (RNA) II subunit J3","CSDP4_anc_B1","POLR2J3"]
[null,null,"UPK3BL2 (LOC107983993)","protein coding","complete","all",null,"uroplakin 3B like 2 [Source:NCBI gene;Acc:107983993]","CSDP4_anc_B1","UPK3BL2"]
[null,"der","SPDYE1","protein coding","complete","all (7)","derivated from SPDYE2 (exons 3-10)","speedy/RINGO cell cycle regulator family member E1","cSDP4_der_B1","SPDYE1"]
[null,null,"POLR2J4","pseudogene","partial","exons 1-13","fusion pseudogene derivated from POLR2J3 (Exons 1-5) ","Homo sapiens polymerase (RNA) II subunit J4, pseudogene?","cSDP4_der_B1 (Exon 1-7) - B3 (Exon 8-10) - B2 (Exon 11-13)","POLR2J4"]
[null,null,"RASA4CP","pseudogene","complete","all  (9)","derivated from RASA4 (exons 4-13)","RAS p21 Protein Activator 4C, Pseudogene","cSDP4_der_B1","RASA4CP"]
[null,null,"LINC00957","RNA gene","partial","exons 1-2","exons 1-2 noncoding","Long Intergenic Non-Protein Coding RNA 957","cSDP4_der_B1(Exon1-2)"]
[null,null,"UPLP (AC004951.2-201)","pseudogene","partial","all","derivated from UPK3BL2 (all exons)","uroplakin-like protein (UPLP) pseudogene","cSDP4_der_B1","UPLP"]
["cSDP5","anc","RP11-774D14.1 (LINC00241)","lincRNA","partial","exons 4-12","ancestral","LINC00241","cSDP5_anc_B1 (Exon 4) - cSDP5_anc_B2 (Exon 5-12)"]
[null,"der","C1QTNF3-AMACR","RNA gene","partial","exon 1","fusion derivated from RP11-74D14.1 and genes of the region","C1QTNF3-AMACR readthrough (NMD candidate)","cSDP5_der_B1 (Exon 1)"]
["cSDP6","anc","RP13-348B13.2 (AL121872.1)","lincRNA","complete","all (3)","ancestral","novel transcript"]
[null,null,"TGIF2LX","protein coding","complete","all (2)",null,"TGFB Induced Factor Homeobox 2 Like X-Linked","cSDP15_anc_B5","TGIF2LX"]
[null,null,"PCDH11X","protein coding","complete","all (7)",null,"Protocadherin 11 X-Linked","cSDP15_anc_B12 (Exons 1-2) - B13 (Multiple transcripts) - B14","PCDH11X"]
[null,"der","LINC00278","RNA gene","partial","all (3)","derivated from RP13-348B13.2 (all exons)","Long Intergenic Non-Protein Coding RNA 278","cSDP15_der_B4 (Exons 3-4)"]
[null,null,"TGIF2LY","protein coding","complete","all (2)","derivated from TGIF2LX (all exons)","TGFB Induced Factor Homeobox 2 Like Y-Linked","cSDP15_der_B5","TGIF2LY"]
[null,null,"PCDH11Y","protein coding","complete","all (5)","derivated from PCDH11X (exons 1-2, 5-7)","Protocadherin 11 Y-Linked","cSDP15_der_B12 (Exons 1-2) - B14 (Exons 3-4)","PCDH11Y"]
["cSDP7","anc","AC084149.1","RNA gene","complete","all","ancestral","-","-"]
[null,"der","no genes","-","-","-","-","-","-"]
["cSDP8","anc","SLC29A4","protein coding","complete","all (24)","ancestral","Solute carrier family 29 member 4","cSDP7_anc_B1 (Exon 1-5) - B2 (Exon 7-11)","SLC29A4"]
[null,null,"TNRC18","protein coding","partial","exons 20-30",null,"Trinucleotide repeat-containing gene 18 protein","cSDP7_anc_B2 (Exon 20-30)","TNRC18"]
[null,"der1","SLC29A4P1","pseudogene","complete","all (5)","derivated from SLC29A4 (exons 7-11)","Solute Carrier Family 29 Member 4 Pseudogene 1","cSDP7_der1_B2"]
[null,null,"TNRC18P3","pseudogene","complete","all (11)","derivated from TNRC18 (exons 20-30)","Trinucleotide Repeat Containing 18 Pseudogene 3","cSDP7_der1_B2"]
[null,null,"RP11-220H4.2 (AC069152.1)","noncoding","complete","all (4)","derivated from SLC29A4 (exons 2-5)","pseudogene similar to part of Solute Carrier Family 29 Member 4","cSDP7_der1_B1"]
[null,"der2","SLC29A4P2","pseudogene","complete","all (5)","derivated from SLC29A4 (exons 7-11)","Solute Carrier Family 29 Member 4 Pseudogene 2","cSDP7_der2_B2"]
[null,null,"TNRC18P2","pseudogene","complete","all (11)","derivated from TNRC18 (exons 20-30)","Trinucleotide Repeat Containing 18 Pseudogene 2","cSDP7_der2_B2"]
[null,null,"RP5-965K10.3","noncoding","complete","all (4)","derivated from SLC29A4 (exons 2-5)","pseudogene similar to part of Solute Carrier Family 29 Member 4","cSDP7_der2_B1"]
[]
["Table S4. NCBI RefSeq curated elements described in the cSDP regions. This table shows the different elements described in the RefSeq curated database that are included in the cSDP regions. In the column \"Paralog genes\" those genes that may have paralog genes are highlighted in bold. anc: ancestral; der: derivative; dup: duplicon; BX: Block number X of the cSDP. *: UPK3c is not described in RefSeq, but corresponds to UPK3BL. EST DB249571 shows the expression on the derivative sequence of the first 3 exons of ancestral UPK3c"]

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["Event","Dup1","Dup2","Alignment length","Aligned matches","Match fraction","SD blocks","Dup1 AB","Dup2 AB","AB Alignment length","AB Alignment match","AB Match fraction","Dup1 CD","Dup2 CD","CD Alignment length","CD Alignment match","CD Match fraction"]
[1,"chr1:759039-802515","chr8:180496-280244",43160,42324,{"v":0.9806,"d":"0.981"},2,"chr1:759039-764791","chr8:180496-186239",5737,5661,{"v":0.9867526581837197,"d":"0.987"},"chr1:764791-802515","chr8:240489-280244",5737,5661,{"v":0.9867526581837197,"d":"0.987"}]
[2,"chr1:12899802-12939637","chr1:13040873-13178079",18436,18157,{"v":0.9849,"d":"0.985"},2,"chr1:12899802-12906128","chr1:13171720-13178079",6318,6193,{"v":0.9802152579930358,"d":"0.980"},"chr1:12927510-12939637","chr1:13040873-13052998",6318,6193,{"v":0.9802152579930358,"d":"0.980"}]
[3,"chr1:12994783-13052998","chr1:12873400-12956000",29783,28105,{"v":0.9437,"d":"0.944"},2,"chr1:12994783-13016081","chr1:12934158-12956000",18151,17090,{"v":0.9415459203349678,"d":"0.942"},"chr1:13041310-13052998","chr1:12873400-12885072",18151,17090,{"v":0.9415459203349678,"d":"0.942"}]
[4,"chr1:16854740-16912257","chr1:16912274-17013592",19933,19283,{"v":0.9674,"d":"0.967"},2,"chr1:16854740-16879368","chr1:16996058-17013592",13662,13201,{"v":0.9662567706045967,"d":"0.966"},"chr1:16905978-16912257","chr1:16912274-16918615",13662,13201,{"v":0.9662567706045967,"d":"0.966"}]
[5,"chr1:29847606-30155441","chr1:30791704-31131869",5405,5043,0.933,3,"chr1:29847606-29849112","chr1:30791704-30793219",1503,1404,{"v":0.9341317365269461,"d":"0.934"},"chr1:29875627-30155441","chr1:30989281-31131869",1503,1404,{"v":0.9341317365269461,"d":"0.934"}]
[6,"chr1:47532911-47598846","chr1:47304216-47416027",60318,57421,0.952,2,"chr1:47532911-47588602","chr1:47304216-47366356",54712,52111,{"v":0.9524601549934201,"d":"0.952"},"chr1:47593224-47598846","chr1:47410382-47416027",54712,52111,{"v":0.9524601549934201,"d":"0.952"}]
[7,"chr1:143871002-143906232","chr1:149433401-149711974",35219,35105,{"v":0.9968,"d":"0.997"},2,"chr1:143871002-143880008","chr1:149702956-149711974",8996,8919,{"v":0.9914406402845709,"d":"0.991"},"chr1:143880003-143906232","chr1:149433401-149459645",8996,8919,{"v":0.9914406402845709,"d":"0.991"}]
[8,"chr1:143644860-144622413","chr1:147866040-148661178",92997,91625,{"v":0.9852,"d":"0.985"},4,"chr1:143644860-144320176","chr1:147866040-148528729",17597,17189,{"v":0.976814229698244,"d":"0.977"},"chr1:144346975-144622413","chr1:148339483-148661178",17597,17189,{"v":0.976814229698244,"d":"0.977"}]
[9,"chr1:146395226-146465999","chr1:144177357-144622412",47147,44811,{"v":0.9505,"d":"0.951"},2,"chr1:146395226-146396275","chr1:144621366-144622412",1046,988,{"v":0.9445506692160612,"d":"0.945"},"chr1:146419530-146465999","chr1:144177357-144224124",1046,988,{"v":0.9445506692160612,"d":"0.945"}]
[10,"chr1:228150859-228173643","chr19:183002-198438",15334,14997,0.978,2,"chr1:228150859-228153293","chr19:183002-185473",2423,2377,{"v":0.9810152703260421,"d":"0.981"},"chr1:228160655-228173643","chr19:185491-198438",2423,2377,{"v":0.9810152703260421,"d":"0.981"}]
[11,"chr1:228150859-228173643","chr16:90237041-90252369",15238,14898,{"v":0.9777,"d":"0.978"},2,"chr1:228150859-228153230","chr16:90250022-90252369",2331,2282,{"v":0.978978978978979,"d":"0.979"},"chr1:228160655-228173643","chr16:90237041-90250004",2331,2282,{"v":0.978978978978979,"d":"0.979"}]
[12,"chr1:228150859-228173643","chr8:142333-150991",8599,8473,{"v":0.9853,"d":"0.985"},2,"chr1:228150859-228153230","chr8:142333-144661",2318,2279,{"v":0.9831751509922347,"d":"0.983"},"chr1:228167321-228173643","chr8:144679-150991",2318,2279,{"v":0.9831751509922347,"d":"0.983"}]
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[]
["Table S5 .Description of the 160 putative SD cluster pairs. This table shows the 160 hits of putative SD clusters pairs, highlighting in green colour those 34 which have a reliable homology plot and there is a breaking junction between the two SD cluster pairs. Dup1: Duplication cluster 1; Dup2: Duplication cluster 2; Alignment length: Length of the alignment between Dup1 and Dup2 in nucleotides; Aligned matches: Number of matching nucleotides in the alignment in nucleotides; Match fraction: Fraction of matching nucleotides; SD blocks: Number of blocks involved in the putative SD cluster pairs; AB: Values belonging to the A-B block described in the proposed mechanism; CD: Values belonging to the C-D block described in the proposed mechanism; Duplication color code: green - putative SD cluster pair with reliable homology plot and a breaking junction between the SD cluster pairs."]