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{"sheet":"Supplementary Table 6","index":0,"n_rows":132,"n_cols":7,"rows_kept":132,"merged":[[0,0,0,6],[131,0,131,6]],"flags":["formulas_cached_only"]}
["Supplementary Table 6 The differentially expressed genes identified between SO and SS groups in the rumen epithelium"]
["Gene id","readcount SO","readcount SS","SO/SS log2FoldChange","p value","Gene name","Gene description"]
["ENSBTAG00000000340",0.158511572565809,3.74857062098169,-4.5637,0.03785,"ADNP","activity dependent neuroprotector homeobox [Source:VGNC Symbol;Acc:VGNC:25683]"]
["ENSBTAG00000002747",1.2289650022696,7.52858513148023,-2.6149,0.019075,"ABCA5","ATP binding cassette subfamily A member 5 [Source:VGNC Symbol;Acc:VGNC:25459]"]
["ENSBTAG00000005848",1.26121783707696,6.94147108316904,-2.4604,0.049134,"PRTG","protogenin [Source:VGNC Symbol;Acc:VGNC:55137]"]
["ENSBTAG00000010518",4.20294720919468,15.3207862716857,-1.866,0.016423,"MTREX","Mtr4 exosome RNA helicase [Source:VGNC Symbol;Acc:VGNC:34649]"]
["ENSBTAG00000010847",3.98374604276219,18.3349275968784,-2.2024,0.038454,"FOXN4","forkhead box N4 [Source:VGNC Symbol;Acc:VGNC:29097]"]
["ENSBTAG00000016107",1.46705755460907,7.92907817806012,-2.4342,0.033097,"PCYT1B","phosphate cytidylyltransferase 1, choline, beta [Source:VGNC Symbol;Acc:VGNC:32653]"]
["ENSBTAG00000016932",0.158511572565809,6.04448040288817,-5.253,0.025657,"SENP7","SUMO specific peptidase 7 [Source:VGNC Symbol;Acc:VGNC:52825]"]
["ENSBTAG00000018192",0.688692244807507,5.9922971709199,-3.1212,0.021033,"ALG8","ALG8 alpha-1,3-glucosyltransferase [Source:VGNC Symbol;Acc:VGNC:25831]"]
["ENSBTAG00000018436",4.3589738726696,15.0477243215978,-1.7875,0.049106,"UBE2J1","ubiquitin conjugating enzyme E2 J1 [Source:VGNC Symbol;Acc:VGNC:36585]"]
["ENSBTAG00000019820",0.166378575394185,12.0677627262548,-6.1805,0.031428,"RAB9B","RAB9B, member RAS oncogene family [Source:VGNC Symbol;Acc:VGNC:33665]"]
["ENSBTAG00000019890",0.600397762791993,5.81850329078991,-3.2767,0.049114,"ATP6V1G3","ATPase H+ transporting V1 subunit G3 [Source:VGNC Symbol;Acc:VGNC:26325]"]
["ENSBTAG00000020420",2.60963091682716,10.4909930366574,-2.0072,0.027663,"AP1S2","adaptor related protein complex 1 subunit sigma 2 [Source:VGNC Symbol;Acc:VGNC:50199]"]
["ENSBTAG00000021364",8.33045305532953,24.6242622197503,-1.5636,0.014659,"TNK2","tyrosine kinase non receptor 2 [Source:VGNC Symbol;Acc:VGNC:36183]"]
["ENSBTAG00000021643",7.00392159044642,26.6219904156487,-1.9264,0.041954,"EFCAB12","EF-hand calcium binding domain 12 [Source:VGNC Symbol;Acc:VGNC:28341]"]
["ENSBTAG00000021811",0.233992084532381,7.16266415138396,-4.936,0.041537,"ANGPT4","angiopoietin 4 [Source:VGNC Symbol;Acc:VGNC:25889]"]
["ENSBTAG00000021956",0.116996042266191,4.44229012156698,-5.2468,0.041936,"ISCA2","iron-sulfur cluster assembly 2 [Source:VGNC Symbol;Acc:VGNC:30291]"]
["ENSBTAG00000029790",0.158511572565809,3.87389578163314,-4.6111,0.048035,"MIR1-1","microRNA 1-1 [Source:HGNC Symbol;Acc:HGNC:31499]"]
["ENSBTAG00000029903",5.10573742749841,23.26591376658,-2.188,0.015956,"bta-mir-216a","bta-mir-216a [Source:miRBase;Acc:MI0009777]"]
["ENSBTAG00000029918",7.55052751377081,20.9447305570087,-1.4719,0.031383,"MIR99B","microRNA 99b [Source:HGNC Symbol;Acc:HGNC:31651]"]
["ENSBTAG00000030285",9.38359680737662,21.2676116643414,-1.1804,0.049775,"DCP1B","decapping mRNA 1B [Source:VGNC Symbol;Acc:VGNC:27920]"]
["ENSBTAG00000031279",4.00950043480445,15.1277723657579,-1.9157,0.016949,"SELENOM","selenoprotein M [Source:VGNC Symbol;Acc:VGNC:53920]"]
["ENSBTAG00000031753",13.5204090986369,31.6680258861808,-1.2279,0.020391,"BTN1A1","butyrophilin subfamily 1 member A1 [Source:NCBI gene;Acc:282157]"]
["ENSBTAG00000032122",13.1190791769559,39.53565335766,-1.5915,0.019173,"CD19","CD19 molecule [Source:VGNC Symbol;Acc:VGNC:27007]"]
["ENSBTAG00000032372",14.8051683331376,33.9851112016133,-1.1988,0.036573,"HASPIN","histone H3 associated protein kinase [Source:VGNC Symbol;Acc:VGNC:55834]"]
["ENSBTAG00000032613",38.4509637418383,70.4962538310922,-0.87453,0.024756,"SCG5","secretogranin V [Source:VGNC Symbol;Acc:VGNC:34334]"]
["ENSBTAG00000032859",28.4225785834987,52.5829538266031,-0.88756,0.037008,"-","-"]
["ENSBTAG00000033481",3.56765881081255,21.9970332240846,-2.6243,0.032992,"C1QTNF8","C1q and TNF related 8 [Source:VGNC Symbol;Acc:VGNC:26628]"]
["ENSBTAG00000033801",2.55723884671805,9.90312368322446,-1.9533,0.038541,"VRK2","VRK serine/threonine kinase 2 [Source:VGNC Symbol;Acc:VGNC:36835]"]
["ENSBTAG00000036404",8.40668926479848,21.6900607516095,-1.3674,0.040853,"bta-mir-155","bta-mir-155 [Source:miRBase;Acc:MI0009752]"]
["ENSBTAG00000037263",7.10951275722303,25.9467019033695,-1.8677,0.028331,"bta-mir-541","bta-mir-541 [Source:miRBase;Acc:MI0009858]"]
["ENSBTAG00000037983",4.26724711236695,18.6333307296222,-2.1265,0.0239,"CEACAM16","CEA cell adhesion molecule 16, tectorial membrane component [Source:VGNC Symbol;Acc:VGNC:27161]"]
["ENSBTAG00000038842",23.2457999898389,52.5143760220505,-1.1757,0.048387,"NEDD8","NEDD8 ubiquitin like modifier [Source:NCBI gene;Acc:286796]"]
["ENSBTAG00000039849",9.90324318111093,44.6777334669231,-2.1736,0.040439,"-","-"]
["ENSBTAG00000042624",10.4230848144357,28.1133472841784,-1.4315,0.01888,"-","-"]
["ENSBTAG00000043347",56.4491861867807,165.77944626711,-1.5542,0.0015005,"-","small nucleolar RNA, H/ACA box 36A [Source:HGNC Symbol;Acc:HGNC:32628]"]
["ENSBTAG00000043462",28.1386635967508,54.7994699161207,-0.96161,0.041026,"SNORD14","Small nucleolar RNA SNORD14 [Source:RFAM;Acc:RF00016]"]
["ENSBTAG00000043725",47.0529647006836,101.294229082275,-1.1062,0.0052946,"5S_rRNA","5S ribosomal RNA [Source:RFAM;Acc:RF00001]"]
["ENSBTAG00000043806",27.1144851842094,192.499737621381,-2.8277,0.0064335,"U2","U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]"]
["ENSBTAG00000044859",35.9373890823116,74.9756776424755,-1.0609,0.049217,"bta-mir-2408","bta-mir-2408 [Source:miRBase;Acc:MI0011451]"]
["ENSBTAG00000045022",88.4873273716175,149.505197837766,-0.75665,0.041256,"SNORA21B","small nucleolar RNA, H/ACA box 21B [Source:HGNC Symbol;Acc:HGNC:52195]"]
["ENSBTAG00000045454",65.2934418113611,110.780922499602,-0.7627,0.03638,"5S_rRNA","5S ribosomal RNA [Source:RFAM;Acc:RF00001]"]
["ENSBTAG00000045579",128.127272285053,227.773940827306,-0.83003,0.018878,"-","transmembrane protein 60 [Source:NCBI gene;Acc:100295750]"]
["ENSBTAG00000046443",44.0536721913491,84.989699066128,-0.94803,0.031388,"IFNAG","Bos taurus IFN-alpha C (IFNAC), mRNA. [Source:RefSeq mRNA;Acc:NM_174085]"]
["ENSBTAG00000046952",56.9015085824456,113.448949806734,-0.9955,0.023375,"-","-"]
["ENSBTAG00000047161",90.3105968778267,164.293612554314,-0.86331,0.022676,"ARSH","arylsulfatase family member H [Source:VGNC Symbol;Acc:VGNC:50166]"]
["ENSBTAG00000048057",52.4194634808093,107.256799108076,-1.0329,0.010115,"GSK3B","glycogen synthase kinase 3 beta [Source:NCBI gene;Acc:790875]"]
["ENSBTAG00000048067",83.9402353389735,137.629980626262,-0.71336,0.047337,"EPOP","elongin BC and polycomb repressive complex 2 associated protein [Source:VGNC Symbol;Acc:VGNC:28550]"]
["ENSBTAG00000048796",104.37751155659,196.206987862068,-0.91057,0.027912,"-","-"]
["ENSBTAG00000048898",156.315708141904,276.005921918061,-0.82024,0.020485,"-","putative olfactory receptor 8G3 [Source:NCBI gene;Acc:782009]"]
["ENSBTAG00000049178",4.85357893406421,263.766482754921,-5.7641,0.041856,"-","-"]
["ENSBTAG00000049990",160.958289620913,263.129429411026,-0.70909,0.045214,"-","-"]
["ENSBTAG00000050456",120.252606792546,196.570202921238,-0.70898,0.045158,"U6","U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]"]
["ENSBTAG00000050617",315.897445214313,556.463613842245,-0.81683,0.024722,"-","-"]
["ENSBTAG00000051028",442.791620435582,740.734777510221,-0.74233,0.030878,"-","-"]
["ENSBTAG00000051855",194.255597985318,354.906348249498,-0.86948,0.019405,"-","-"]
["ENSBTAG00000054212",488.743398082831,805.038938006993,-0.71998,0.037868,"-","-"]
["ENSBTAG00000054673",511.44215569048,837.197779649184,-0.711,0.041679,"-","-"]
["Novel01644",6508.16205986162,10129.4615511664,-0.63824,0.048921,"-","-"]
["ENSBTAG00000001488",4.191234517,0.297124646,3.8182,0.037035,"OTC","ornithine carbamoyltransferase [Source:VGNC Symbol;Acc:VGNC:32482]"]
["ENSBTAG00000002460",15.1577556,5.04584936,1.5869,0.048048,"ACTL6A","actin like 6A [Source:VGNC Symbol;Acc:VGNC:25575]"]
["ENSBTAG00000002842",8.558610855,1.308273014,2.7097,0.020214,"HEATR4","HEAT repeat containing 4 [Source:VGNC Symbol;Acc:VGNC:29793]"]
["ENSBTAG00000004631",10.99990518,2.450792034,2.1662,0.023853,"KIAA0586","KIAA0586 [Source:VGNC Symbol;Acc:VGNC:30554]"]
["ENSBTAG00000005559",4.662076733,0.264299078,4.1407,0.029125,"-","-"]
["ENSBTAG00000007696",3.607778648,0,{"$error":"#NAME?"},0.015772,"TRAPPC8","trafficking protein particle complex 8 [Source:NCBI gene;Acc:538805]"]
["ENSBTAG00000008365",5.51020174,0.231473511,4.5732,0.031603,"ANKRD34A","ankyrin repeat domain 34A [Source:VGNC Symbol;Acc:VGNC:25924]"]
["ENSBTAG00000010254",21.15018606,1.08344533,4.287,0.040034,"MAP3K6","mitogen-activated protein kinase kinase kinase 6 [Source:VGNC Symbol;Acc:VGNC:31199]"]
["ENSBTAG00000010955",22.10748691,2.887362973,2.9367,0.029008,"NUP54","nucleoporin 54 [Source:NCBI gene;Acc:506916]"]
["ENSBTAG00000011406",5.262659124,0.115736755,5.5069,0.012894,"TESK1","testis associated actin remodelling kinase 1 [Source:VGNC Symbol;Acc:VGNC:35754]"]
["ENSBTAG00000013486",9.30785295,0.709986047,3.7126,0.001582,"C5H12orf66","chromosome 5 C12orf66 homolog [Source:VGNC Symbol;Acc:VGNC:49164]"]
["ENSBTAG00000017762",3.219878048,0,{"$error":"#NAME?"},0.031703,"GNG8","G protein subunit gamma 8 [Source:VGNC Symbol;Acc:VGNC:29469]"]
["ENSBTAG00000017799",7.322367192,1.334820994,2.4557,0.048499,"PITPNB","phosphatidylinositol transfer protein beta [Source:VGNC Symbol;Acc:VGNC:32920]"]
["ENSBTAG00000018317",2.97309945,0,{"$error":"#NAME?"},0.040652,"PPP2R2A","protein phosphatase 2 regulatory subunit Balpha [Source:VGNC Symbol;Acc:VGNC:33255]"]
["ENSBTAG00000018390",7.712249878,1.559726133,2.3059,0.045025,"GLB1L2","galactosidase beta 1 like 2 [Source:VGNC Symbol;Acc:VGNC:54872]"]
["ENSBTAG00000018727",8.717899604,1.804268004,2.2726,0.047822,"GOLIM4","golgi integral membrane protein 4 [Source:VGNC Symbol;Acc:VGNC:29490]"]
["ENSBTAG00000018744",5.417189062,0.468916572,3.5301,0.016888,"MGAT5","alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase [Source:VGNC Symbol;Acc:VGNC:54620]"]
["ENSBTAG00000018761",5.93086094,0.667410497,3.1516,0.032764,"SLC35F6","solute carrier family 35 member F6 [Source:VGNC Symbol;Acc:VGNC:34836]"]
["ENSBTAG00000019255",8.855025347,2.017728623,2.1338,0.038914,"NFE2L2","nuclear factor, erythroid 2 like 2 [Source:VGNC Symbol;Acc:VGNC:32036]"]
["ENSBTAG00000019269",7.495584472,1.558553854,2.2658,0.031999,"COL6A2","collagen type VI alpha 2 chain [Source:VGNC Symbol;Acc:VGNC:27571]"]
["ENSBTAG00000019480",7.599580538,1.417509781,2.4226,0.045224,"PDE6D","phosphodiesterase 6D [Source:VGNC Symbol;Acc:VGNC:32682]"]
["ENSBTAG00000019821",9.852102142,2.389841011,2.0435,0.029218,"DHX9","DExH-box helicase 9 [Source:VGNC Symbol;Acc:VGNC:28060]"]
["ENSBTAG00000019887",80.38547402,23.39183404,1.7809,0.00048089,"DHODH","dihydroorotate dehydrogenase (quinone) [Source:NCBI gene;Acc:533873]"]
["ENSBTAG00000020080",22.55533039,7.09668685,1.6683,0.014643,"MYBPC2","myosin binding protein C, fast type [Source:VGNC Symbol;Acc:VGNC:57354]"]
["ENSBTAG00000020252",4.729958803,0.397958324,3.5711,0.033599,"NLGN2","neuroligin 2 [Source:VGNC Symbol;Acc:VGNC:55861]"]
["ENSBTAG00000020707",24.25773193,9.845470707,1.3009,0.029503,"ADGRG6","adhesion G protein-coupled receptor G6 [Source:VGNC Symbol;Acc:VGNC:25669]"]
["ENSBTAG00000021156",5.128740231,0.282221569,4.1837,0.011454,"TBC1D31","TBC1 domain family member 31 [Source:VGNC Symbol;Acc:VGNC:35642]"]
["ENSBTAG00000021525",11.5786679,2.794299324,2.0509,0.042759,"RAB42","RAB42, member RAS oncogene family [Source:NCBI gene;Acc:514286]"]
["ENSBTAG00000021777",21.57772831,8.48928858,1.3458,0.038912,"DOC2G","double C2, gamma [Source:NCBI gene;Acc:618318]"]
["ENSBTAG00000021885",89.34167816,22.77326419,1.972,0.0093923,"RSPO4","R-spondin 4 [Source:VGNC Symbol;Acc:VGNC:34190]"]
["ENSBTAG00000022209",10.49100284,1.093041294,3.2627,0.019318,"CABP2","calcium binding protein 2 [Source:VGNC Symbol;Acc:VGNC:26665]"]
["ENSBTAG00000024691",15.20378644,5.496064835,1.468,0.042852,"-","olfactory receptor, family 6, subfamily C, member 1 [Source:NCBI gene;Acc:788009]"]
["ENSBTAG00000024788",18.60865095,7.100701475,1.3899,0.039327,"-","olfactory receptor 140 [Source:NCBI gene;Acc:526335]"]
["ENSBTAG00000025968",10.67726777,2.930566722,1.8653,0.041491,"-","-"]
["ENSBTAG00000027059",42.66767096,18.84436986,1.179,0.0095707,"ARPIN","actin related protein 2/3 complex inhibitor [Source:NCBI gene;Acc:613997]"]
["ENSBTAG00000027716",15.85550763,4.988200019,1.6684,0.030923,"-","-"]
["ENSBTAG00000029544",22.88016256,6.291819284,1.8625,0.0051482,"U2","U2 spliceosomal RNA [Source:RFAM;Acc:RF00004]"]
["ENSBTAG00000029774",35.37173962,15.00413962,1.2372,0.046049,"bta-let-7f-2","bta-let-7f-2 [Source:miRBase;Acc:MI0004734]"]
["ENSBTAG00000029847",26.50327858,10.22005707,1.3748,0.039934,"MIR18A","microRNA 18a [Source:HGNC Symbol;Acc:HGNC:31548]"]
["ENSBTAG00000030575",67.549146,14.00805115,2.2697,4.36e-05,"BHLHE41","basic helix-loop-helix family member e41 [Source:VGNC Symbol;Acc:VGNC:26487]"]
["ENSBTAG00000032839",33.55570634,16.08459799,1.0609,0.047971,"LRCH3","leucine rich repeats and calponin homology domain containing 3 [Source:VGNC Symbol;Acc:VGNC:30973]"]
["ENSBTAG00000034138",80.12478021,35.46164091,1.176,0.010404,"-","beta-hexosaminidase subunit beta [Source:NCBI gene;Acc:786974]"]
["ENSBTAG00000034269",75.84402904,29.09541782,1.3822,0.004947,"RCBTB1","RCC1 and BTB domain containing protein 1 [Source:VGNC Symbol;Acc:VGNC:33823]"]
["ENSBTAG00000034949",27.49917439,12.79706203,1.1036,0.042256,"-","histone H2A type 1-B/E [Source:NCBI gene;Acc:524236]"]
["ENSBTAG00000034973",74.04681305,36.67562747,1.0136,0.043614,"-","-"]
["ENSBTAG00000035029",52.46812623,21.20564515,1.307,0.012897,"-","-"]
["ENSBTAG00000035530",53.87152267,25.18917724,1.0967,0.025957,"-","-"]
["ENSBTAG00000037006",58.00919354,28.07124305,1.0472,0.024983,"5S_rRNA","5S ribosomal RNA [Source:RFAM;Acc:RF00001]"]
["ENSBTAG00000037488",22.06226788,6.670405894,1.7257,0.0088609,"JRKL","JRK like [Source:VGNC Symbol;Acc:VGNC:30385]"]
["ENSBTAG00000037616",31.96097578,14.75785713,1.1148,0.022751,"KCNJ6","potassium inwardly rectifying channel subfamily J member 6 [Source:VGNC Symbol;Acc:VGNC:53585]"]
["ENSBTAG00000039086",39.57040842,19.59770571,1.0137,0.030526,"-","-"]
["ENSBTAG00000039388",90.91379606,44.43704939,1.0327,0.013888,"GPR101","G protein-coupled receptor 101 [Source:VGNC Symbol;Acc:VGNC:29543]"]
["ENSBTAG00000039618",72.72875367,40.39409107,0.84838,0.047018,"ARL14EPL","ADP ribosylation factor like GTPase 14 effector protein like [Source:NCBI gene;Acc:616348]"]
["ENSBTAG00000039643",22.11040469,6.100343949,1.8578,0.028977,"-","dihydrodiol dehydrogenase 3 [Source:NCBI gene;Acc:785762]"]
["ENSBTAG00000039971",76.1424945,41.81343039,0.86474,0.029738,"-","bile salt sulfotransferase [Source:NCBI gene;Acc:514658]"]
["ENSBTAG00000039991",62.99099192,34.50909553,0.86817,0.044309,"UGT2B10","UDP glucuronosyltransferase 2 family, polypeptide B10 [Source:NCBI gene;Acc:533587]"]
["ENSBTAG00000042271",46.12364192,22.9617809,1.0063,0.041691,"U6","U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]"]
["ENSBTAG00000042272",114.4750766,50.35404049,1.1849,0.026156,"SNORA79","small nucleolar RNA, H/ACA box 79 [Source:HGNC Symbol;Acc:HGNC:32665]"]
["ENSBTAG00000042435",42.86499669,21.39907532,1.0023,0.038644,"SNORA75","Small nucleolar RNA SNORA75 [Source:RFAM;Acc:RF00072]"]
["ENSBTAG00000043046",152.6472736,85.92755846,0.82901,0.045959,"-","-"]
["ENSBTAG00000043117",100.285958,52.52413145,0.93307,0.016837,"-","-"]
["ENSBTAG00000044278",137.7326946,83.77124306,0.71734,0.04966,"SNORA70","Small nucleolar RNA SNORA70 [Source:RFAM;Acc:RF00156]"]
["ENSBTAG00000045214",100.9804261,16.36844978,2.6251,0.0038085,"U6","U6 spliceosomal RNA [Source:RFAM;Acc:RF00026]"]
["ENSBTAG00000045372",126.6477375,67.19932738,0.9143,0.041517,"-","-"]
["ENSBTAG00000045856",76.12948838,46.62547621,0.70734,0.048947,"bta-mir-3432b","bta-mir-3432b [Source:miRBase;Acc:MI0031505]"]
["ENSBTAG00000046666",374.3084941,174.030936,1.1049,0.031283,"TTC9B","tetratricopeptide repeat domain 9B [Source:VGNC Symbol;Acc:VGNC:36482]"]
["ENSBTAG00000047103",196.7324555,117.6882345,0.74126,0.049434,"IDNK","IDNK gluconokinase [Source:VGNC Symbol;Acc:VGNC:30034]"]
["ENSBTAG00000049045",679.2198884,327.9550679,1.0504,0.025774,"-","-"]
["ENSBTAG00000052503",415.5679615,234.7906318,0.82371,0.013373,"bta-mir-2285cw-2","bta-mir-2285cw-2 [Source:miRBase;Acc:MI0038428]"]
["ENSBTAG00000054928",1149.770487,643.3054643,0.83777,0.021808,"bta-mir-2486","bta-mir-2486 [Source:miRBase;Acc:MI0011550]"]
["Novel00785",3161.180351,1657.724539,0.93126,0.0061528,"-","-"]
["The SO respects short oat hay group; SS respects short soybean hull group."]