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["rs157706191",1109975,"A","G","missense_variant","MODERATE","galU","Rv0993",704,"Gln235Arg"]
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["rs157706822",1251199,"C","T","missense_variant","MODERATE","ppdK","Rv1127c",206,"Gly69Glu"]
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["NA",1289789,"A","G","missense_variant","MODERATE","narG","Rv1161",2462,"Asp821Gly"]
["NA",1294004,"C","T","missense_variant","MODERATE","narI","Rv1164",599,"Ala200Val"]
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["NA",1393003,"T","G","missense_variant","MODERATE","Rv1248c","Rv1248c",50,"Glu17Ala"]
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["rs157707922",1482627,"T","C","missense_variant","MODERATE","Rv1320c","Rv1320c",1591,"Thr531Ala"]
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["NA",1609445,"A","C","missense_variant","MODERATE","Rv1431","Rv1431",1363,"Lys455Gln"]
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["rs157709196",1694199,"C","T","missense_variant","MODERATE","Rv1503c","Rv1503c",346,"Glu116Lys"]
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["rs157709925",1826054,"T","C","missense_variant","MODERATE","Rv1624c","Rv1624c",532,"Thr178Ala"]
["NA",1947951,"G","A","missense_variant","MODERATE","Rv1722","Rv1722",91,"Val31Met"]
["NA",1999264,"A","G","missense_variant","MODERATE","Rv1765A","Rv1765A",94,"Trp32Arg"]
["rs157711381",2052035,"G","T","missense_variant","MODERATE","PPE33","Rv1809",754,"Val252Leu"]
["NA",2096326,"C","A","missense_variant","MODERATE","blaI","Rv1846c",274,"Asp92Tyr"]
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["rs157720724",3475159,"A","G","missense_variant","MODERATE","fprA","Rv3106",1153,"Asn385Asp"]
["NA",3480106,"G","C","missense_variant","MODERATE","Rv3113","Rv3113",33,"Trp11Cys"]
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["rs157721113",3556275,"A","G","missense_variant","MODERATE","Rv3190c","Rv3190c",413,"Leu138Pro"]
["rs157721628",3624486,"T","C","missense_variant","MODERATE","lpqB","Rv3244c",425,"Asp142Gly"]
["rs157722215",3697708,"A","G","missense_variant","MODERATE","sapM","Rv3310",511,"Thr171Ala"]
["rs157723158",3785946,"A","G","missense_variant","MODERATE","Rv3371","Rv3371",1015,"Arg339Gly"]
["rs157723159",3786033,"A","G","missense_variant","MODERATE","Rv3371","Rv3371",1102,"Ile368Val"]
["NA",3794281,"C","T","missense_variant","MODERATE","dxs2","Rv3379c",587,"Cys196Tyr"]
["rs157723323",3808103,"T","C","missense_variant","MODERATE","cmaA1","Rv3392c",335,"Asn112Ser"]
["NA",3842581,"A","G","missense_variant","MODERATE","PPE57","Rv3425",343,"Arg115Gly"]
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["rs157724561",4028752,"A","G","missense_variant","MODERATE","Rv3586","Rv3586",862,"Thr288Ala"]
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["rs157725341",4162339,"A","G","missense_variant","MODERATE","Rv3719","Rv3719",34,"Thr12Ala"]
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["NA",4250836,"C","T","missense_variant","MODERATE","Rv3796","Rv3796",959,"Thr320Ile"]
["NA",4286288,"G","A","missense_variant","MODERATE","Rv3821","Rv3821",316,"Asp106Asn"]
["NA",4286330,"G","A","missense_variant","MODERATE","Rv3821","Rv3821",358,"Ala120Thr"]
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["NA",295855,"A","C","upstream_gene_variant","MODIFIER","fabG4","Rv0242c",-3826,"NA"]
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["NA",675976,"A","G","upstream_gene_variant","MODIFIER","PE_PGRS7","Rv0578c",-60,"NA"]
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["NA",1573968,"C","T","upstream_gene_variant","MODIFIER","Rv1393c","Rv1393c",-4381,"NA"]
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["NA",3965359,"T","C","upstream_gene_variant","MODIFIER","Rv3525c","Rv3525c",-3035,"NA"]
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["Rv0318c",386432,"C","G","G","missense_variant","MODERATE","Rv0318c","c.668G>C","p.Gly223Ala"]
["Rv0507",598723,"G","T","T","missense_variant","MODERATE","mmpL2","c.1525G>T","p.Asp509Tyr"]
["Rv0507",599363,"C","G","G","missense_variant","MODERATE","mmpL2","c.2165C>G","p.Ser722Cys"]
["Rv0584",679497,"A","G","G","missense_variant","MODERATE","Rv0584","c.269A>G","p.Asp90Gly"]
["Rv0686",786393,"T","G","G","missense_variant","MODERATE","Rv0686","c.245T>G","p.Ile82Ser"]
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["Rv0987",1104690,"T","G","G","missense_variant","MODERATE","Rv0987","c.2149T>G","p.Phe717Val"]
["Rv0988",1105284,"G","A","A","missense_variant","MODERATE","Rv0988","c.169G>A","p.Val57Ile"]
["Rv0988",1105518,"T","G","G","missense_variant","MODERATE","Rv0988","c.403T>G","p.Tyr135Asp"]
["Rv1008",1127648,"C","A","A","missense_variant","MODERATE","tatD","c.560C>A","p.Thr187Asn"]
["Rv1218c",1362006,"T","C","C","missense_variant","MODERATE","Rv1218c","c.728A>G","p.Gln243Arg"]
["Rv1224",1367484,"T","G","G","missense_variant","MODERATE","tatB","c.22T>G","p.Trp8Gly"]
["Rv1239c",1382628,"T","C","C","missense_variant","MODERATE","corA","c.415A>G","p.Lys139Glu"]
["Rv1431",1608276,"A","C","C","missense_variant","MODERATE","Rv1431","c.194A>C","p.Asn65Thr"]
["Rv1431",1609445,"A","C","C","missense_variant","MODERATE","Rv1431","c.1363A>C","p.Lys455Gln"]
["Rv1624c",1826054,"T","C","C","missense_variant","MODERATE","Rv1624c","c.532A>G","p.Thr178Ala"]
["Rv1920",2172012,"G","C","C","missense_variant","MODERATE","Rv1920","c.390G>C","p.Met130Ile"]
["Rv1979c",2222308,"T","C","C","missense_variant","MODERATE","Rv1979c","c.857A>G","p.Asp286Gly"]
["Rv2080",2337373,"T","C","C","missense_variant","MODERATE","lppJ","c.68T>C","p.Val23Ala"]
["Rv2316",2589216,"G","C","C","missense_variant","MODERATE","uspA","c.379G>C","p.Val127Leu"]
["Rv2398c",2695378,"C","G","G","missense_variant","MODERATE","cysW","c.422G>C","p.Gly141Ala"]
["Rv2709",3021942,"C","G","G","missense_variant","MODERATE","Rv2709","c.104C>G","p.Thr35Ser"]
["Rv2729c",3042353,"G","C","C","missense_variant","MODERATE","Rv2729c","c.123C>G","p.Phe41Leu"]
["Rv3244c",3624486,"T","C","C","missense_variant","MODERATE","lpqB","c.425A>G","p.Asp142Gly"]
["Rv3310",3697708,"A","G","G","missense_variant","MODERATE","sapM","c.511A>G","p.Thr171Ala"]
["Rv3437",3857161,"T","C","C","missense_variant","MODERATE","Rv3437","c.251T>C","p.Leu84Pro"]
["Rv3821",4286288,"G","A","A","missense_variant","MODERATE","Rv3821","c.316G>A","p.Asp106Asn"]
["Rv3821",4286330,"G","A","A","missense_variant","MODERATE","Rv3821","c.358G>A","p.Ala120Thr"]
["Rv0402c",481880,"A","G","G","missense_variant","MODERATE","mmpL1","c.1352T>C","p.Leu451Pro"]
["Rv0556",648002,"T","G","G","missense_variant","MODERATE","Rv0556","c.44T>G","p.Leu15Arg"]
["Rv1198",1341040,"C","A","A","missense_variant","MODERATE","esxL","c.35C>A","p.Ala12Asp"]
["Rv2339",2617173,"G","A","A","stop_gained","HIGH","mmpL9","c.2481G>A","p.Trp827*"]
["Rv0930",1037911,"C","T","T","stop_gained","HIGH","pstA1","c.913C>T","p.Arg305*"]
["Rv0112",137185,"G","A","A","synonymous_variant","LOW","gca","c.897G>A","p.Gln299Gln"]
["Rv0261c",312851,"G","A","A","synonymous_variant","LOW","narK3","c.1318C>T","p.Leu440Leu"]
["Rv0261c",313869,"G","A","A","synonymous_variant","LOW","narK3","c.300C>T","p.Ser100Ser"]
["Rv0450c",539863,"A","G","G","synonymous_variant","LOW","mmpL4","c.1629T>C","p.Ser543Ser"]
["Rv0450c",539883,"A","G","G","synonymous_variant","LOW","mmpL4","c.1609T>C","p.Leu537Leu"]
["Rv0507",597816,"A","G","G","synonymous_variant","LOW","mmpL2","c.618A>G","p.Ala206Ala"]
["Rv0987",1105073,"A","G","G","synonymous_variant","LOW","Rv0987","c.2532A>G","p.Gly844Gly"]
["Rv1244",1386922,"C","T","T","synonymous_variant","LOW","lpqZ","c.66C>T","p.Gly22Gly"]
["Rv1371",1544255,"C","T","T","synonymous_variant","LOW","Rv1371","c.897C>T","p.Arg299Arg"]
["Rv1491c",1681928,"C","T","T","synonymous_variant","LOW","Rv1491c","c.39G>A","p.Val13Val"]
["Rv1730c",1956523,"C","A","A","synonymous_variant","LOW","Rv1730c","c.723G>T","p.Thr241Thr"]
["Rv2224c",2495500,"T","C","C","synonymous_variant","LOW","caeA","c.1524A>G","p.Leu508Leu"]
["Rv2265",2539620,"G","A","A","synonymous_variant","LOW","Rv2265","c.921G>A","p.Val307Val"]
["Rv2585c",2912294,"T","G","G","synonymous_variant","LOW","Rv2585c","c.384A>C","p.Ala128Ala"]
["Rv3239c",3614982,"T","C","C","synonymous_variant","LOW","Rv3239c","c.2622A>G","p.Leu874Leu"]
["Rv3289c",3670040,"C","T","T","synonymous_variant","LOW","Rv3289c","c.372G>A","p.Ala124Ala"]
["Rv3476c",3892671,"A","G","G","synonymous_variant","LOW","kgtP","c.1050T>C","p.Val350Val"]
["Rv3479",3898408,"A","G","G","synonymous_variant","LOW","Rv3479","c.2589A>G","p.Ala863Ala"]
["Rv3614c",4054637,"A","G","G","synonymous_variant","LOW","espD","c.60T>C","p.Gly20Gly"]
["Rv3615c",4054869,"C","T","T","synonymous_variant","LOW","espC","c.255G>A","p.Lys85Lys"]
["Rv3669",4111303,"G","C","C","synonymous_variant","LOW","Rv3669","c.477G>C","p.Val159Val"]
["Rv3679",4119246,"T","C","C","synonymous_variant","LOW","Rv3679","c.471T>C","p.Asp157Asp"]
["Rv0344c",414486,"C","T","T","synonymous_variant","LOW","lpqJ","c.456G>A","p.Glu152Glu"]
["Rv1198",1341044,"C","T","T","synonymous_variant","LOW","esxL","c.39C>T","p.His13His"]
["Rv1217c",1360209,"T","C","C","synonymous_variant","LOW","Rv1217c","c.1593A>G","p.Ala531Ala"]
["Rv2198c",2462871,"G","A","A","synonymous_variant","LOW","mmpS3","c.177C>T","p.Ala59Ala"]
["Rv3197",3568004,"C","A","A","synonymous_variant","LOW","Rv3197","c.981C>A","p.Arg327Arg"]
["Rv0103c",123842,"C","T","T","upstream_gene_variant","MODIFIER","ctpB","c.-1669G>A"]
["Rv0107c",133839,"C","T","T","upstream_gene_variant","MODIFIER","ctpI","c.-3298G>A"]
["Rv0206c",251669,"T","C","C","upstream_gene_variant","MODIFIER","mmpL3","c.-4351A>G"]
["Rv0314c",386060,"T","C","C","upstream_gene_variant","MODIFIER","Rv0314c","c.-2519A>G"]
["Rv0412c",503354,"G","C","C","upstream_gene_variant","MODIFIER","Rv0412c","c.-3735C>G"]
["Rv0585c",684290,"A","G","G","upstream_gene_variant","MODIFIER","Rv0585c","c.-18T>C"]
["Rv0821c",918799,"T","C","C","upstream_gene_variant","MODIFIER","phoY2","c.-4600A>G"]
["Rv1433",1611283,"T","C","C","upstream_gene_variant","MODIFIER","Rv1433","c.-151T>C"]
["Rv1668c",1900021,"C","T","T","upstream_gene_variant","MODIFIER","Rv1668c","c.-4679G>A"]
["Rv1733c",1965434,"A","G","G","upstream_gene_variant","MODIFIER","Rv1733c","c.-4947T>C"]
["Rv1795",2032115,"A","G","G","upstream_gene_variant","MODIFIER","eccD5","c.-125A>G"]
["Rv1980c",2228967,"A","G","G","upstream_gene_variant","MODIFIER","mpt64","c.-4938T>C"]
["Rv1984c",2231486,"A","G","G","upstream_gene_variant","MODIFIER","cfp21","c.-2925T>C"]
["Rv2180c",2447539,"A","G","G","upstream_gene_variant","MODIFIER","Rv2180c","c.-4325T>C"]
["Rv3104c",3477603,"C","T","T","upstream_gene_variant","MODIFIER","Rv3104c","c.-4825G>A"]
["Rv3809c",4278106,"G","A","A","upstream_gene_variant","MODIFIER","glf","c.-4631C>T"]
["Rv0962c",1075279,"T","C","C","upstream_gene_variant","MODIFIER","lprP","c.-165A>G"]
["Rv3610c",4056416,"C","A","A","upstream_gene_variant","MODIFIER","ftsH","c.-3533G>T"]

{"sheet":"Conserved_hypothetical&Unknown","index":2,"n_rows":68,"n_cols":10,"rows_kept":68,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","ANN","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv1502",1693733,"C","T","synonymous_variant","LOW","Rv1502","c.810C>T","p.Cys270Cys"]
["Rv0026",31057,"C","G","G","missense_variant","MODERATE","Rv0026","c.1336C>G","p.Gln446Glu"]
["Rv0572c",665293,"A","G","G","missense_variant","MODERATE","Rv0572c","c.91T>C","p.Phe31Leu"]
["Rv0739",831566,"A","G","G","missense_variant","MODERATE","Rv0739","c.712A>G","p.Met238Val"]
["Rv1486c",1676290,"C","A","A","missense_variant","MODERATE","Rv1486c","c.594G>T","p.Lys198Asn"]
["Rv1503c",1694199,"C","T","T","missense_variant","MODERATE","Rv1503c","c.346G>A","p.Glu116Lys"]
["Rv2001",2247169,"G","A","A","missense_variant","MODERATE","Rv2001","c.338G>A","p.Arg113His"]
["Rv2024c",2269376,"G","A","A","missense_variant","MODERATE","Rv2024c","c.865C>T","p.Arg289Cys"]
["Rv2036",2282376,"C","T","T","missense_variant","MODERATE","Rv2036","c.278C>T","p.Ala93Val"]
["Rv2078",2335075,"A","G","G","missense_variant","MODERATE","Rv2078","c.17A>G","p.Glu6Gly"]
["Rv2226",2499726,"G","A","A","missense_variant","MODERATE","Rv2226","c.895G>A","p.Asp299Asn"]
["Rv2309A",2583201,"G","A","A","missense_variant","MODERATE","Rv2309A","c.157G>A","p.Glu53Lys"]
["Rv2331A",2604875,"A","C","C","missense_variant","MODERATE","Rv2331A","c.136A>C","p.Ile46Leu"]
["Rv2360c",2642383,"C","T","T","missense_variant","MODERATE","Rv2360c","c.196G>A","p.Ala66Thr"]
["Rv2513",2830525,"C","A","A","missense_variant","MODERATE","Rv2513","c.365C>A","p.Thr122Lys"]
["Rv2694c",3011566,"G","T","T","missense_variant","MODERATE","Rv2694c","c.202C>A","p.Arg68Ser"]
["Rv2809",3115543,"A","C","C","missense_variant","MODERATE","Rv2809","c.136A>C","p.Thr46Pro"]
["Rv2825c",3133536,"T","C","C","missense_variant","MODERATE","Rv2825c","c.4A>G","p.Lys2Glu"]
["Rv2862c",3174496,"A","G","G","missense_variant","MODERATE","Rv2862c","c.148T>C","p.Cys50Arg"]
["Rv2991",3348258,"G","A","A","missense_variant","MODERATE","Rv2991","c.277G>A","p.Ala93Thr"]
["Rv3190c",3556275,"A","G","G","missense_variant","MODERATE","Rv3190c","c.413T>C","p.Leu138Pro"]
["Rv3586",4028752,"A","G","G","missense_variant","MODERATE","Rv3586","c.862A>G","p.Thr288Ala"]
["Rv3698",4140690,"G","C","C","missense_variant","MODERATE","Rv3698","c.198G>C","p.Met66Ile"]
["Rv3698",4141190,"C","G","G","missense_variant","MODERATE","Rv3698","c.698C>G","p.Pro233Arg"]
["Rv3796",4250836,"C","T","T","missense_variant","MODERATE","Rv3796","c.959C>T","p.Thr320Ile"]
["Rv0080",89200,"G","T","T","missense_variant","MODERATE","Rv0080","c.179G>T","p.Gly60Val"]
["Rv2492",2807486,"C","A","A","missense_variant","MODERATE","Rv2492","c.209C>A","p.Ala70Asp"]
["Rv2681",2997325,"C","T","T","missense_variant","MODERATE","Rv2681","c.587C>T","p.Ala196Val"]
["Rv2683",3000362,"T","C","C","missense_variant","MODERATE","Rv2683","c.251T>C","p.Leu84Ser"]
["Rv2862c",3174591,"C","G","G","missense_variant","MODERATE","Rv2862c","c.53G>C","p.Arg18Pro"]
["Rv2955c",3308466,"C","T","T","missense_variant","MODERATE","Rv2955c","c.80G>A","p.Arg27His"]
["Rv2956",3309377,"T","C","C","missense_variant","MODERATE","Rv2956","c.710T>C","p.Ile237Thr"]
["Rv3719",4162339,"A","G","G","missense_variant","MODERATE","Rv3719","c.34A>G","p.Thr12Ala"]
["Rv1502",1693561,"A","G","missense_variant","MODERATE","Rv1502","c.638A>G","p.Tyr213Cys"]
["Rv1498A",1690345,"A","G","G","start_lost","HIGH","Rv1498A","c.2T>C","p.Met1?"]
["Rv3753c",4200220,"A","G","G","start_lost","HIGH","Rv3753c","c.2T>C","p.Met1?"]
["Rv1504c",1694547,"A","C","C","stop_lost&splice_region_variant","HIGH","Rv1504c","c.598T>G","p.Ter200Gluext*?"]
["Rv0365c",443559,"C","A","A","synonymous_variant","LOW","Rv0365c","c.639G>T","p.Val213Val"]
["Rv0566c",657578,"A","G","G","synonymous_variant","LOW","Rv0566c","c.462T>C","p.Asp154Asp"]
["Rv0749A",841764,"G","C","C","synonymous_variant","LOW","Rv0749A","c.111C>G","p.Thr37Thr"]
["Rv0760c",854498,"G","A","A","synonymous_variant","LOW","Rv0760c","c.189C>T","p.Phe63Phe"]
["Rv1251c",1396922,"T","C","C","synonymous_variant","LOW","Rv1251c","c.2319A>G","p.Thr773Thr"]
["Rv1421",1596734,"C","T","T","synonymous_variant","LOW","Rv1421","c.756C>T","p.Arg252Arg"]
["Rv1501",1692141,"A","C","C","synonymous_variant","LOW","Rv1501","c.252A>C","p.Ile84Ile"]
["Rv1724c",1950767,"T","C","C","synonymous_variant","LOW","Rv1724c","c.285A>G","p.Lys95Lys"]
["Rv2023c",2267976,"G","T","T","synonymous_variant","LOW","Rv2023c","c.133C>A","p.Arg45Arg"]
["Rv2036",2282377,"C","T","T","synonymous_variant","LOW","Rv2036","c.279C>T","p.Ala93Ala"]
["Rv2078",2335127,"C","T","T","synonymous_variant","LOW","Rv2078","c.69C>T","p.His23His"]
["Rv2185c",2447426,"G","T","T","synonymous_variant","LOW","TB16.3","c.75C>A","p.Ile25Ile"]
["Rv2242",2515639,"G","T","T","synonymous_variant","LOW","Rv2242","c.336G>T","p.Val112Val"]
["Rv2426c",2723506,"T","C","C","synonymous_variant","LOW","Rv2426c","c.678A>G","p.Leu226Leu"]
["Rv3531c",3968252,"C","T","T","synonymous_variant","LOW","Rv3531c","c.693G>A","p.Ser231Ser"]
["Rv3714c",4159195,"T","C","C","synonymous_variant","LOW","Rv3714c","c.627A>G","p.Pro209Pro"]
["Rv3785",4231433,"A","G","G","synonymous_variant","LOW","Rv3785","c.114A>G","p.Ala38Ala"]
["Rv0628c",719658,"C","T","T","synonymous_variant","LOW","Rv0628c","c.255G>A","p.Val85Val"]
["Rv1593c",1794234,"G","A","A","synonymous_variant","LOW","Rv1593c","c.474C>T","p.Ala158Ala"]
["Rv1873",2123278,"T","G","G","synonymous_variant","LOW","Rv1873","c.105T>G","p.Gly35Gly"]
["Rv2542",2865882,"T","C","C","synonymous_variant","LOW","Rv2542","c.753T>C","p.Val251Val"]
["Rv0464c",557299,"G","A","A","upstream_gene_variant","MODIFIER","Rv0464c","c.-2414C>T"]
["Rv1682",1906336,"A","G","G","upstream_gene_variant","MODIFIER","Rv1682","c.-67A>G"]
["Rv1830",2074754,"C","T","T","upstream_gene_variant","MODIFIER","Rv1830","c.-87C>T"]
["Rv1976c",2223293,"T","C","C","upstream_gene_variant","MODIFIER","Rv1976c","c.-4042A>G"]
["Rv2003c",2251999,"A","G","G","upstream_gene_variant","MODIFIER","Rv2003c","c.-2579T>C"]
["Rv2020c",2268397,"C","T","T","upstream_gene_variant","MODIFIER","Rv2020c","c.-1677G>A"]
["Rv2239c",2516567,"G","C","C","upstream_gene_variant","MODIFIER","Rv2239c","c.-4915C>G"]
["Rv3351c",3772616,"G","A","A","upstream_gene_variant","MODIFIER","Rv3351c","c.-4476C>T"]
["Rv2015c",2265059,"T","G","G","upstream_gene_variant","MODIFIER","Rv2015c","c.-1987A>C"]

{"sheet":"Insertion_phages","index":3,"n_rows":8,"n_cols":10,"rows_kept":8,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","ANN","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv0920c",1026070,"G","T","T","missense_variant","MODERATE","Rv0920c","c.747C>A","p.Asp249Glu"]
["Rv1034c",1164272,"C","T","T","upstream_gene_variant","MODIFIER","Rv1034c","c.-4965G>A"]
["Rv1149",1275957,"T","C","C","upstream_gene_variant","MODIFIER","Rv1149","c.-1936T>C"]
["Rv1313c",1471659,"C","T","T","upstream_gene_variant","MODIFIER","Rv1313c","c.-2154G>A"]
["Rv1765A",1999264,"A","G","G","missense_variant","MODERATE","Rv1765A","c.94T>C","p.Trp32Arg"]
["Rv3640c",4078863,"C","T","T","missense_variant","MODERATE","Rv3640c","c.887G>A","p.Gly296Glu"]
["Rv1035c",1164336,"G","A","A","upstream_gene_variant","MODIFIER","Rv1035c","c.-4275C>T"]

{"sheet":"Lipid_metabolism","index":4,"n_rows":33,"n_cols":10,"rows_kept":33,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","ANN","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv0230c",275367,"G","T","T","missense_variant","MODERATE","php","c.597C>A","p.Asp199Glu"]
["Rv0405",489935,"G","C","C","missense_variant","MODERATE","pks6","c.4205G>C","p.Arg1402Pro"]
["Rv1521",1712522,"G","T","T","missense_variant","MODERATE","fadD25","c.221G>T","p.Ser74Ile"]
["Rv1722",1947951,"G","A","A","missense_variant","MODERATE","Rv1722","c.91G>A","p.Val31Met"]
["Rv1866",2113188,"G","C","C","missense_variant","MODERATE","Rv1866","c.49G>C","p.Glu17Gln"]
["Rv2930",3244414,"A","G","G","missense_variant","MODERATE","fadD26","c.718A>G","p.Met240Val"]
["Rv2931",3246547,"A","C","C","missense_variant","MODERATE","ppsA","c.1103A>C","p.Asn368Thr"]
["Rv2935",3271037,"A","G","G","missense_variant","MODERATE","ppsE","c.3301A>G","p.Asn1101Asp"]
["Rv3371",3785946,"A","G","G","missense_variant","MODERATE","Rv3371","c.1015A>G","p.Arg339Gly"]
["Rv3371",3786033,"A","G","G","missense_variant","MODERATE","Rv3371","c.1102A>G","p.Ile368Val"]
["Rv3392c",3808103,"T","C","C","missense_variant","MODERATE","cmaA1","c.335A>G","p.Asn112Ser"]
["Rv3516",3952800,"G","A","A","missense_variant","MODERATE","echA19","c.257G>A","p.Gly86Asp"]
["Rv0642c",736919,"G","T","T","missense_variant","MODERATE","mmaA4","c.285C>A","p.Phe95Leu"]
["Rv0644c",738820,"C","A","A","missense_variant","MODERATE","mmaA2","c.341G>T","p.Arg114Leu"]
["Rv2931",3248074,"G","A","A","missense_variant","MODERATE","ppsA","c.2630G>A","p.Arg877His"]
["Rv1180",1315191,"A","C","C","stop_lost&splice_region_variant","HIGH","pks3","c.1467A>C","p.Ter489Tyrext*?"]
["Rv0033",36612,"A","G","G","synonymous_variant","LOW","acpA","c.6A>G","p.Lys2Lys"]
["Rv0101",116000,"T","G","G","synonymous_variant","LOW","nrp","c.6000T>G","p.Val2000Val"]
["Rv0166",196642,"C","T","T","synonymous_variant","LOW","fadD5","c.1650C>T","p.Asn550Asn"]
["Rv0632c",729114,"G","A","A","synonymous_variant","LOW","echA3","c.165C>T","p.Gly55Gly"]
["Rv0873",971902,"G","A","A","synonymous_variant","LOW","fadE10","c.1398G>A","p.Gly466Gly"]
["Rv1074c",1198276,"G","A","A","synonymous_variant","LOW","fadA3","c.1098C>T","p.Gly366Gly"]
["Rv1493",1684979,"T","C","C","synonymous_variant","LOW","mutB","c.975T>C","p.Ser325Ser"]
["Rv1722",1949081,"C","T","T","synonymous_variant","LOW","Rv1722","c.1221C>T","p.Arg407Arg"]
["Rv1760",1994566,"C","T","T","synonymous_variant","LOW","Rv1760","c.1414C>T","p.Leu472Leu"]
["Rv2247",2521342,"T","C","C","synonymous_variant","LOW","accD6","c.600T>C","p.Asp200Asp"]
["Rv2933",3261006,"C","A","A","synonymous_variant","LOW","ppsC","c.5322C>A","p.Gly1774Gly"]
["Rv0470c",560857,"C","G","G","synonymous_variant","LOW","pcaA","c.855G>C","p.Leu285Leu"]
["Rv2931",3248075,"C","T","T","synonymous_variant","LOW","ppsA","c.2631C>T","p.Arg877Arg"]
["Rv0242c",295855,"A","C","C","upstream_gene_variant","MODIFIER","fabG4","c.-3826T>G"]
["Rv0400c",483935,"T","G","G","upstream_gene_variant","MODIFIER","fadE7","c.-4182A>C"]
["Rv1071c",1200418,"A","G","G","upstream_gene_variant","MODIFIER","echA9","c.-4326T>C"]

{"sheet":"Metabolism&Respiration","index":5,"n_rows":89,"n_cols":9,"rows_kept":89,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv0013",15117,"C","G","missense_variant","MODERATE","trpG","c.204C>G","p.Ile68Met"]
["Rv0156",184727,"A","G","missense_variant","MODERATE","pntAb","c.5A>G","p.Tyr2Cys"]
["Rv0197",233364,"G","C","missense_variant","MODERATE","Rv0197","c.1134G>C","p.Arg378Ser"]
["Rv0223c",267329,"G","A","missense_variant","MODERATE","Rv0223c","c.436C>T","p.Pro146Ser"]
["Rv0327c",393748,"G","A","missense_variant","MODERATE","cyp135A1","c.298C>T","p.His100Tyr"]
["Rv0338c",403980,"G","A","missense_variant","MODERATE","Rv0338c","c.1862C>T","p.Ala621Val"]
["Rv0338c",404326,"T","C","missense_variant","MODERATE","Rv0338c","c.1516A>G","p.Arg506Gly"]
["Rv0408",492150,"G","C","missense_variant","MODERATE","pta","c.365G>C","p.Gly122Ala"]
["Rv0663",757182,"A","G","missense_variant","MODERATE","atsD","c.1046A>G","p.Asp349Gly"]
["Rv0769",862575,"C","T","missense_variant","MODERATE","Rv0769","c.164C>T","p.Ala55Val"]
["Rv0812",906857,"A","G","missense_variant","MODERATE","Rv0812","c.435A>G","p.Ile145Met"]
["Rv0843",939959,"A","G","missense_variant","MODERATE","Rv0843","c.572A>G","p.Asp191Gly"]
["Rv0848",945214,"G","A","missense_variant","MODERATE","cysK2","c.277G>A","p.Gly93Ser"]
["Rv0945",1054784,"C","G","missense_variant","MODERATE","Rv0945","c.538C>G","p.Arg180Gly"]
["Rv0958",1070702,"T","C","missense_variant","MODERATE","Rv0958","c.820T>C","p.Ser274Pro"]
["Rv0993",1109975,"A","G","missense_variant","MODERATE","galU","c.704A>G","p.Gln235Arg"]
["Rv1127c",1251199,"C","T","missense_variant","MODERATE","ppdK","c.206G>A","p.Gly69Glu"]
["Rv1161",1288699,"G","C","missense_variant","MODERATE","narG","c.1372G>C","p.Val458Leu"]
["Rv1161",1289789,"A","G","missense_variant","MODERATE","narG","c.2462A>G","p.Asp821Gly"]
["Rv1248c",1393003,"T","G","missense_variant","MODERATE","Rv1248c","c.50A>C","p.Glu17Ala"]
["Rv1320c",1482627,"T","C","missense_variant","MODERATE","Rv1320c","c.1591A>G","p.Thr531Ala"]
["Rv1326c",1490905,"A","G","missense_variant","MODERATE","glgB","c.1408T>C","p.Ser470Pro"]
["Rv1326c",1490911,"G","A","missense_variant","MODERATE","glgB","c.1402C>T","p.Pro468Ser"]
["Rv1449c",1630148,"A","C","missense_variant","MODERATE","tkt","c.52T>G","p.Tyr18Asp"]
["Rv1602",1803265,"G","A","missense_variant","MODERATE","hisH","c.602G>A","p.Ser201Asn"]
["Rv1605",1805214,"C","T","missense_variant","MODERATE","hisF","c.362C>T","p.Pro121Leu"]
["Rv1851",2099793,"A","T","missense_variant","MODERATE","ureF","c.100A>T","p.Met34Leu"]
["Rv1872c",2122625,"A","G","missense_variant","MODERATE","lldD2","c.527T>C","p.Val176Ala"]
["Rv1915",2160998,"G","A","missense_variant","MODERATE","aceAa","c.536G>A","p.Gly179Asp"]
["Rv2109c",2369186,"G","C","missense_variant","MODERATE","prcA","c.544C>G","p.Arg182Gly"]
["Rv2195",2459234,"G","C","missense_variant","MODERATE","qcrA","c.843G>C","p.Met281Ile"]
["Rv2291",2563958,"A","C","missense_variant","MODERATE","sseB","c.785A>C","p.Glu262Ala"]
["Rv2458",2760152,"A","G","missense_variant","MODERATE","mmuM","c.374A>G","p.Tyr125Cys"]
["Rv2702",3017465,"T","C","missense_variant","MODERATE","ppgK","c.608T>C","p.Ile203Thr"]
["Rv2918c",3229201,"G","A","missense_variant","MODERATE","glnD","c.1480C>T","p.Arg494Trp"]
["Rv2995c",3352919,"A","G","missense_variant","MODERATE","leuB","c.550T>C","p.Phe184Leu"]
["Rv3028c",3387097,"G","A","missense_variant","MODERATE","fixB","c.935C>T","p.Ala312Val"]
["Rv3042c",3402816,"C","T","missense_variant","MODERATE","serB2","c.347G>A","p.Gly116Glu"]
["Rv3106",3475159,"A","G","missense_variant","MODERATE","fprA","c.1153A>G","p.Asn385Asp"]
["Rv3113",3480106,"G","C","missense_variant","MODERATE","Rv3113","c.33G>C","p.Trp11Cys"]
["Rv3113",3480474,"G","A","missense_variant","MODERATE","Rv3113","c.401G>A","p.Gly134Glu"]
["Rv3113",3480645,"T","G","missense_variant","MODERATE","Rv3113","c.572T>G","p.Leu191Arg"]
["Rv3138",3504523,"G","A","missense_variant","MODERATE","pflA","c.329G>A","p.Ser110Asn"]
["Rv3161c",3530955,"C","G","missense_variant","MODERATE","Rv3161c","c.184G>C","p.Val62Leu"]
["Rv3551",3989914,"G","T","missense_variant","MODERATE","Rv3551","c.19G>T","p.Ala7Ser"]
["Rv3570c",4012219,"T","C","missense_variant","MODERATE","hsaA","c.52A>G","p.Asn18Asp"]
["Rv3671c",4112429,"T","C","missense_variant","MODERATE","Rv3671c","c.1087A>G","p.Ile363Val"]
["Rv1164",1294004,"C","T","missense_variant","MODERATE","narI","c.599C>T","p.Ala200Val"]
["Rv2178c",2440926,"G","T","missense_variant","MODERATE","aroG","c.795C>A","p.Asp265Glu"]
["Rv3379c",3794281,"C","T","missense_variant","MODERATE","dxs2","c.587G>A","p.Cys196Tyr"]
["Rv1005c",1123597,"A","G","start_lost","HIGH","pabB","c.2T>C","p.Leu1?"]
["Rv0032",36538,"T","C","synonymous_variant","LOW","bioF2","c.2244T>C","p.Ser748Ser"]
["Rv0197",233358,"A","C","synonymous_variant","LOW","Rv0197","c.1128A>C","p.Val376Val"]
["Rv0374c",451827,"C","T","synonymous_variant","LOW","Rv0374c","c.453G>A","p.Ala151Ala"]
["Rv0484c",573262,"A","G","synonymous_variant","LOW","Rv0484c","c.540T>C","p.Gly180Gly"]
["Rv0562",652935,"C","T","synonymous_variant","LOW","grcC1","c.165C>T","p.Gly55Gly"]
["Rv0809",903913,"T","C","synonymous_variant","LOW","purM","c.189T>C","p.Gly63Gly"]
["Rv1284",1437438,"C","A","synonymous_variant","LOW","canA","c.115C>A","p.Arg39Arg"]
["Rv1327c",1492605,"C","T","synonymous_variant","LOW","glgE","c.1821G>A","p.Ala607Ala"]
["Rv1666c",1893473,"G","A","synonymous_variant","LOW","cyp139","c.90C>T","p.Thr30Thr"]
["Rv2364c",2646542,"G","A","synonymous_variant","LOW","era","c.132C>T","p.Ala44Ala"]
["Rv2458",2760147,"C","T","synonymous_variant","LOW","mmuM","c.369C>T","p.Arg123Arg"]
["Rv3059",3420442,"C","T","synonymous_variant","LOW","cyp136","c.951C>T","p.Tyr317Tyr"]
["Rv3273",3655353,"C","T","synonymous_variant","LOW","Rv3273","c.717C>T","p.Phe239Phe"]
["Rv3318",3705482,"G","A","synonymous_variant","LOW","sdhA","c.483G>A","p.Glu161Glu"]
["Rv3378c",3792712,"C","T","synonymous_variant","LOW","Rv3378c","c.537G>A","p.Thr179Thr"]
["Rv3530c",3967458,"T","C","synonymous_variant","LOW","Rv3530c","c.363A>G","p.Leu121Leu"]
["Rv3545c",3984321,"G","A","synonymous_variant","LOW","cyp125","c.1125C>T","p.His375His"]
["Rv3725",4171113,"T","C","synonymous_variant","LOW","Rv3725","c.900T>C","p.Ser300Ser"]
["Rv0484c",573277,"G","C","synonymous_variant","LOW","Rv0484c","c.525C>G","p.Thr175Thr"]
["Rv0032",34044,"T","C","upstream_gene_variant","MODIFIER","bioF2","c.-251T>C"]
["Rv0247c",301687,"C","T","upstream_gene_variant","MODIFIER","Rv0247c","c.-2825G>A"]
["Rv0337c",405854,"C","G","upstream_gene_variant","MODIFIER","aspC","c.-2692G>C"]
["Rv0669c",769679,"A","C","upstream_gene_variant","MODIFIER","Rv0669c","c.-82T>G"]
["Rv0851c",951142,"C","A","upstream_gene_variant","MODIFIER","Rv0851c","c.-2674G>T"]
["Rv1621c",1828000,"G","A","upstream_gene_variant","MODIFIER","cydD","c.-4727C>T"]
["Rv1869c",2123169,"T","G","upstream_gene_variant","MODIFIER","Rv1869c","c.-2474A>C"]
["Rv2951c",3308606,"G","A","upstream_gene_variant","MODIFIER","Rv2951c","c.-4358C>T"]
["Rv3001c",3363338,"A","G","upstream_gene_variant","MODIFIER","ilvC","c.-2752T>C"]
["Rv3525c",3965359,"T","C","upstream_gene_variant","MODIFIER","Rv3525c","c.-3035A>G"]
["Rv3677c",4121675,"C","T","upstream_gene_variant","MODIFIER","Rv3677c","c.-3623G>A"]
["Rv3741c",4197189,"A","G","upstream_gene_variant","MODIFIER","Rv3741c","c.-4336T>C"]
["Rv3762c",4212174,"T","C","upstream_gene_variant","MODIFIER","Rv3762c","c.-3298A>G"]
["Rv3854c",4329782,"G","A","upstream_gene_variant","MODIFIER","ethA","c.-2309C>T"]
["Rv0091",99301,"C","T","upstream_gene_variant","MODIFIER","mtn","c.-383C>T"]
["Rv1393c",1573968,"C","T","upstream_gene_variant","MODIFIER","Rv1393c","c.-4381G>A"]
["Rv2773c",3086788,"T","C","upstream_gene_variant","MODIFIER","dapB","c.-4447A>G"]
["Rv3859c",4338732,"G","A","upstream_gene_variant","MODIFIER","gltB","c.-2651C>T"]

{"sheet":"Pathways","index":6,"n_rows":23,"n_cols":9,"rows_kept":23,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv0001",467,"A","G","missense_variant","MODERATE","dnaA","c.467A>G","p.His156Arg"]
["Rv0006",7362,"G","C","missense_variant","MODERATE","gyrA","c.61G>C","p.Glu21Gln"]
["Rv0006",7585,"G","C","missense_variant","MODERATE","gyrA","c.284G>C","p.Ser95Thr"]
["Rv1253",1400396,"A","G","missense_variant","MODERATE","deaD","c.427A>G","p.Met143Val"]
["Rv2101",2362041,"C","A","missense_variant","MODERATE","helZ","c.1802C>A","p.Pro601Gln"]
["Rv2555c",2875808,"C","G","missense_variant","MODERATE","alaS","c.678G>C","p.Lys226Asn"]
["Rv2845c",3152421,"T","C","missense_variant","MODERATE","proS","c.530A>G","p.His177Arg"]
["Rv3711c",4156099,"C","A","missense_variant","MODERATE","dnaQ","c.631G>T","p.Val211Leu"]
["Rv3731",4182695,"G","A","missense_variant","MODERATE","ligC","c.938G>A","p.Arg313His"]
["Rv0003",3751,"T","G","missense_variant","MODERATE","recF","c.472T>G","p.Leu158Val"]
["Rv0003",4013,"T","C","missense_variant","MODERATE","recF","c.734T>C","p.Ile245Thr"]
["Rv2533c",2858669,"G","T","missense_variant","MODERATE","nusB","c.56C>A","p.Ala19Asp"]
["Rv0041",43945,"A","G","synonymous_variant","LOW","leuS","c.384A>G","p.Val128Val"]
["Rv0058",62768,"A","G","synonymous_variant","LOW","dnaB","c.2373A>G","p.Gly791Gly"]
["Rv0667",763031,"T","C","synonymous_variant","LOW","rpoB","c.3225T>C","p.Ala1075Ala"]
["Rv0722",815103,"C","T","synonymous_variant","LOW","rpmD","c.111C>T","p.Arg37Arg"]
["Rv2756c",3069805,"G","C","synonymous_variant","LOW","hsdM","c.279C>G","p.Val93Val"]
["Rv3649",4090661,"C","T","synonymous_variant","LOW","Rv3649","c.1881C>T","p.His627His"]
["Rv1547",1750921,"C","A","synonymous_variant","LOW","dnaE1","c.3228C>A","p.Ala1076Ala"]
["Rv0516c",610120,"T","G","upstream_gene_variant","MODIFIER","Rv0516c","c.-1585A>C"]
["Rv2448c",2752698,"C","A","upstream_gene_variant","MODIFIER","valS","c.-2473G>T"]
["Rv2592c",2927939,"T","C","upstream_gene_variant","MODIFIER","ruvB","c.-3706A>G"]

{"sheet":"PPE","index":7,"n_rows":18,"n_cols":9,"rows_kept":18,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv0096",105867,"C","T","missense_variant","MODERATE","PPE1","c.544C>T","p.Arg182Trp"]
["Rv3425",3842581,"A","G","missense_variant","MODERATE","PPE57","c.343A>G","p.Arg115Gly"]
["Rv3425",3842582,"G","T","missense_variant","MODERATE","PPE57","c.344G>T","p.Arg115Met"]
["Rv3425",3842585,"G","A","missense_variant","MODERATE","PPE57","c.347G>A","p.Arg116His"]
["Rv0159c",188077,"G","T","missense_variant","MODERATE","PE3","c.763C>A","p.Pro255Thr"]
["Rv1809",2052035,"G","T","missense_variant","MODERATE","PPE33","c.754G>T","p.Val252Leu"]
["Rv2769c",3078178,"C","T","missense_variant","MODERATE","PE27","c.808G>A","p.Val270Met"]
["Rv1809",2052687,"G","C","stop_lost&splice_region_variant","HIGH","PPE33","c.1406G>C","p.Ter469Serext*?"]
["Rv0286",350489,"G","C","synonymous_variant","LOW","PPE4","c.555G>C","p.Ala185Ala"]
["Rv1040c",1163134,"T","C","synonymous_variant","LOW","PE8","c.243A>G","p.Gly81Gly"]
["Rv0578c",675976,"A","G","upstream_gene_variant","MODIFIER","PE_PGRS7","c.-60T>C"]
["Rv0755c",851562,"G","A","upstream_gene_variant","MODIFIER","PPE12","c.-1522C>T"]
["Rv0834c",934230,"C","G","upstream_gene_variant","MODIFIER","PE_PGRS14","c.-3745G>C"]
["Rv0834c",934233,"G","A","upstream_gene_variant","MODIFIER","PE_PGRS14","c.-3748C>T"]
["Rv1803c",2046859,"T","C","upstream_gene_variant","MODIFIER","PE_PGRS32","c.-17A>G"]
["Rv1840c",2093715,"T","C","upstream_gene_variant","MODIFIER","PE_PGRS34","c.-4197A>G"]
["Rv3350c",3770688,"C","T","upstream_gene_variant","MODIFIER","PPE56","c.-3586G>A"]

{"sheet":"Regulatory","index":8,"n_rows":20,"n_cols":9,"rows_kept":20,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv0845",941845,"C","A","missense_variant","MODERATE","Rv0845","c.656C>A","p.Ala219Glu"]
["Rv1846c",2096326,"C","A","missense_variant","MODERATE","blaI","c.274G>T","p.Asp92Tyr"]
["Rv2779c",3086728,"C","T","missense_variant","MODERATE","Rv2779c","c.27G>A","p.Met9Ile"]
["Rv0019c",23714,"C","T","synonymous_variant","LOW","fhaB","c.24G>A","p.Leu8Leu"]
["Rv1028c",1149551,"C","T","synonymous_variant","LOW","kdpD","c.2136G>A","p.Glu712Glu"]
["Rv1266c",1415097,"C","G","synonymous_variant","LOW","pknH","c.744G>C","p.Ala248Ala"]
["Rv1358",1526819,"C","A","synonymous_variant","LOW","Rv1358","c.208C>A","p.Arg70Arg"]
["Rv1453",1639418,"A","G","synonymous_variant","LOW","Rv1453","c.1038A>G","p.Leu346Leu"]
["Rv1985c",2229801,"C","G","synonymous_variant","LOW","Rv1985c","c.102G>C","p.Pro34Pro"]
["Rv2258c",2531742,"A","G","synonymous_variant","LOW","Rv2258c","c.156T>C","p.Ala52Ala"]
["Rv3080c",3444566,"G","A","synonymous_variant","LOW","pknK","c.1423C>T","p.Leu475Leu"]
["Rv3676",4116682,"T","C","synonymous_variant","LOW","crp","c.205T>C","p.Leu69Leu"]
["Rv3736",4187485,"T","C","synonymous_variant","LOW","Rv3736","c.852T>C","p.Ala284Ala"]
["Rv3744",4195742,"C","T","synonymous_variant","LOW","nmtR","c.303C>T","p.Ala101Ala"]
["Rv2282c",2559663,"C","G","upstream_gene_variant","MODIFIER","Rv2282c","c.-3787G>C"]
["Rv3143",3509091,"G","C","upstream_gene_variant","MODIFIER","Rv3143","c.-563G>C"]
["Rv3764c",4215001,"C","A","upstream_gene_variant","MODIFIER","tcrY","c.-3992G>T"]
["Rv0117",139756,"T","C","upstream_gene_variant","MODIFIER","oxyS","c.-1444T>C"]
["Rv3124",3489340,"C","G","upstream_gene_variant","MODIFIER","moaR1","c.-166C>G"]

{"sheet":"Virulence","index":9,"n_rows":15,"n_cols":9,"rows_kept":15,"flags":["formulas_cached_only"]}
["Rv_locus","Pos","Ref","Alt","Type","effect","Gene","Gene_pos","aa_chnge"]
["Rv0064A",71731,"C","T","missense_variant","MODERATE","vapB1","c.143C>T","p.Ala48Val"]
["Rv0127",154283,"T","C","missense_variant","MODERATE","mak","c.52T>C","p.Ser18Pro"]
["Rv0169",199470,"T","G","missense_variant","MODERATE","mce1A","c.937T>G","p.Ser313Ala"]
["Rv0169",199608,"C","T","missense_variant","MODERATE","mce1A","c.1075C>T","p.Pro359Ser"]
["Rv0170",200430,"T","C","missense_variant","MODERATE","mce1B","c.536T>C","p.Ile179Thr"]
["Rv2299c",2573756,"C","A","upstream_gene_variant","MODIFIER","htpG","c.-1754G>T"]
["Rv2416c",2718852,"T","G","upstream_gene_variant","MODIFIER","eis","c.-3520A>C"]
["Rv2526",2851291,"G","A","synonymous_variant","LOW","vapB17","c.201G>A","p.Val67Val"]
["Rv3500c",3919439,"G","A","synonymous_variant","LOW","yrbE4B","c.624C>T","p.Pro208Pro"]
["Rv3759c",4204441,"A","G","synonymous_variant","LOW","proX","c.933T>C","p.His311His"]
["Rv3846",4321317,"T","C","missense_variant","MODERATE","sodA","c.614T>C","p.Ile205Thr"]
["Rv0240",289435,"G","T","missense_variant","MODERATE","vapC24","c.91G>T","p.Ala31Ser"]
["Rv1102c",1230778,"G","A","missense_variant","MODERATE","mazF3","c.194C>T","p.Thr65Ile"]
["Rv3063",3429041,"T","C","missense_variant","MODERATE","cstA","c.1799T>C","p.Leu600Pro"]