Segments Lineage num_samples TMRCA TMRCA_lower TMRCA_upper first_sample_date last_sample_date first_sister HA Panzootic 2029 2019.655113 2019.425313 2019.873713 2020-01-11 2022-06-20 EPI1999299|A/chicken/Egypt/Cairo-HC11B-AH/2020|2020-01-01|H5N8 HA JKE-2019 321 2019.473213 2019.224113 2019.715813 2019-12-30 2021-03-13 EPI1666962|A/guinea_fowl/Nigeria/OG-GF11T_19VIR8424-7/2019_H5N8|2019-07-05|H5N8 MP Panzootic 1726 2015.713539 2015.124864 2016.435402 2020-01-11 2022-04-14 EPI_ISL_644737|A/peregrine_falcon/Denmark/13776-1/2020-10-30|2020-10-30|H5N5 MP JKE-2019 315 2016.416196 2015.168389 2016.687082 2019-12-30 2021-03-13 EPI_ISL_405278|A/guinea_fowl/Nigeria/OG-GF11T_19VIR8424-7/2019_H5N8|2019-07-05|H5N8 N1 Panzootic 5 2019.327105 2018.871221 2019.752434 2021-05-20 2021-11-12 EPI_ISL_1184524|A/mallard/Novosibirsk_region/3445k/2020|2020-08-29|H1N1 N1 Panzootic 632 2019.607368 2019.083618 2019.989857 2020-10-16 2022-04-14 EPI_ISL_400286|A/Shoveler/Chany_Lake/62/2019|2019-09-07|H1N1 N8 Panzootic 960 2019.431943 2019.273262 2019.637908 2020-01-11 2022-03-01 EPI_ISL_12866390|A/chicken/Egypt/Army/1201/2022|2022-01-19|H5N8 N8 JKE-2019 316 2019.14303 2018.371898 2019.49496 2019-12-30 2021-03-13 EPI_ISL_405278|A/guinea_fowl/Nigeria/OG-GF11T_19VIR8424-7/2019_H5N8|2019-07-05|H5N8 NP Panzootic 39 2021.424906 2020.908394 2021.54906 2022-03-14 2022-03-31 EPI_ISL_6795396|A/cinnamon_teal/Utah/AH0166334/2021|2021-08-06|H11N0 NP Panzootic 6 2021.558919 2020.480339 2021.788155 2022-03-22 2022-03-28 EPI_ISL_6795363|A/mallard/Alaska/AH0177454/2021|2021-08-02|H10N7 NP Panzootic 14 2018.411229 2017.527277 2018.992735 2022-03-17 2022-03-28 EPI_ISL_501815|A/Mallard_duck/Alberta/588/2019|2019-08-22|H6N5 NP Panzootic 12 2020.146901 2019.651119 2020.804916 2020-12-14 2022-01-05 EPI_ISL_661312|A/guinea_fowl/Germany-NW/AI01184/2020|2020-09-11|H5N8 NP Panzootic 7 2020.801809 2020.55669 2021.16206 2021-11-28 2022-03-02 EPI_ISL_502594|A/Anas_platyrhynchos/Belgium/10399/2018|2018-09-29|H4N6 NP Panzootic 7 2020.801913 2020.755427 2020.910031 2021-02-01 2021-03-10 EPI_ISL_1240996|A/common_teal/Novosibirsk_region/3559k/2020|2020-08-29|H4N6 NP Panzootic 10 2017.881596 2017.355231 2018.959943 2021-01-08 2022-03-25 EPI_ISL_6795223|A/Duck/Sangiin_Dalai_lake/#230/2019|2019-05-08|H7N7 NP Panzootic 5 2020.800936 2020.70736 2020.98052 2021-02-26 2021-03-24 EPI_ISL_502593|A/Anas_Platyrhynchos/Belgium/10811_6/2019|2019-09-21|H5N6 NP Panzootic 8 2020.802391 2020.75057 2020.907336 2021-02-19 2021-07-06 EPI_ISL_3031133|A_mallard_Denmark_12946-11_2020-10-26|2020-10-26|H5N2 NP Panzootic 18 2020.799856 2020.720762 2020.935334 2021-10-28 2022-02-10 EPI_ISL_7987337|A/turkey/Italy/21VIR8480-1/2021|2021-10-11|H5N1 NP JKE-2019 165 2018.472992 2017.70254 2018.925491 2020-09-06 2021-03-13 EPI_ISL_12627552|A/wild_bird/Shandong/W1553/2020|2020-03-15|H7N7 NP Panzootic 6 2020.801036 2020.706409 2021.06541 2021-11-15 2021-12-27 EPI_ISL_400270|A/Common_Teal/Chany_Lake/40/2019|2019-09-07|H12N5 NP JKE-2019 150 2018.473762 2017.402802 2018.631945 2019-12-30 2020-12-14 EPI_ISL_697696|A/duck/Mongolia/451/2018|2018-09-02|H4N1 NP Panzootic 7 2018.628877 2018.217507 2019.364339 2021-05-20 2022-02-09 EPI_ISL_400274|A/mallard/Novosibirsk_region/1894k/2019|2019-09-08|H4N6 NP Panzootic 122 2020.715975 2020.512545 2020.800811 2021-09-30 2022-04-14 EPI_ISL_7987334|A/duck/Italy/21VIR8024-1/2021|2021-09-23|H5N3 NP Panzootic 398 2017.759334 2016.751789 2018.228806 2020-09-20 2022-03-29 EPI_ISL_337148|A/pochard/Buryatia/33/2018|2018-08-25|H4N6 NP Panzootic 1017 2018.033826 2017.669019 2018.279835 2020-01-11 2022-03-01 EPI_ISL_12866390|A/chicken/Egypt/Army/1201/2022|2022-01-19|H5N8 NS Panzootic 7 2015.160744 2012.648953 2017.217181 2021-11-28 2022-03-02 EPI_ISL_355935|A/green_sandpiper/Kurgan/1043/2018|2018-08-26|H3N8 NS Panzootic 15 2014.21401 2011.401586 2015.575907 2021-10-28 2022-02-10 EPI_ISL_300521|A/Mallard/Markeev/16-3-11/2016|2016-11-03|H5N2 NS JKE-2019 10 2014.194974 2011.497929 2015.385897 2020-12-02 2020-12-28 EPI_ISL_1184529|A/mallard/Russia_Primorje/48T/2020|2020-09-08|H9N2 NS JKE-2019 302 2019.024183 2018.798343 2019.139484 2019-12-30 2021-03-13 EPI_ISL_405278|A/guinea_fowl/Nigeria/OG-GF11T_19VIR8424-7/2019_H5N8|2019-07-05|H5N8 NS Panzootic 1033 2018.889044 2018.717637 2019.039932 2020-01-11 2022-03-01 EPI_ISL_4070847|A/chicken/Egypt/F17230B/2019|2019-06-25|H5N8 NS Panzootic 603 2015.872287 2015.361714 2020.790984 2020-10-16 2022-04-14 EPI_ISL_3031133|A_mallard_Denmark_12946-11_2020-10-26|2020-10-26|H5N2 NS Panzootic 13 2019.303568 2017.6728 2020.057707 2020-12-14 2021-02-22 EPI_ISL_1263541|A/mallard/France/20P017917/2020|2020-12-07|H5N3 NS Panzootic 5 2018.171701 2017.490915 2018.943532 2021-05-20 2021-11-12 EPI_ISL_1241001|A/mallard/Novosibirsk_region/3541k/2020|2020-08-29|H12N5 NS Panzootic 10 2017.639848 2016.972775 2018.564273 2021-01-08 2022-03-25 EPI_ISL_400267|A/Common_Teal/Chany_Lake/29/2019|2019-09-07|H14N3 NS Panzootic 7 2019.413463 2018.736603 2020.029115 2021-02-01 2021-03-10 EPI_ISL_339038|A/mallard/Chany_Lake/18/2018|2018-09-06|H1N3 PA JKE-2019 18 2020.028592 2019.277789 2020.401189 2020-12-02 2021-02-24 EPI_ISL_1184531|A/mallard/Russia_Primorje/94T/2020|2020-10-03|H1N1 PA Panzootic 11 2020.668491 2020.52669 2020.778406 2020-12-14 2021-02-22 EPI_ISL_7623045|A/Anas_platyrynchos/Belgium/1098_2/2020|2020-09-12|H1N1 PA Panzootic 13 2020.66854 2020.653814 2021.010872 2021-02-16 2021-05-21 EPI_ISL_403716|A/Common_Teal/Dagestan/34d/2019|2019-09-29|H4N6 PA Panzootic 27 2020.501749 2020.266778 2020.674823 2020-10-29 2021-07-06 EPI_ISL_644737|A/peregrine_falcon/Denmark/13776-1/2020-10-30(H5N5)|2020-10-30|H5N5 PA Panzootic 126 2019.14902 2018.60708 2019.819055 2021-02-01 2022-04-14 EPI_ISL_338359|A/chicken/Central_Russia/1/2017|2017-12-25|H5N2 PA Panzootic 508 2017.600487 2016.276801 2017.815342 2020-08-29 2022-03-31 EPI_ISL_1241001|A/mallard/Novosibirsk_region/3541k/2020|2020-08-29|H12N5 PA Panzootic 10 2020.030223 2019.280493 2020.721172 2021-01-08 2022-03-25 EPI_ISL_503498|A/duck/Bangladesh/37607/2019|2019-01-17|H10N3 PA Panzootic 9 2018.489587 2017.841284 2018.909115 2021-11-28 2022-03-02 EPI_ISL_338361|A/shoveler/Novosibirsk_region/998k/2018|2018-10-01|H2N1 PA Panzootic 982 2018.791341 2018.570982 2019.185753 2020-01-11 2022-03-01 EPI_ISL_4069778|A/duck/Egypt/A16793/2019|2019-02-27|H5N8 PA JKE-2019 295 2019.483693 2018.285865 2019.600033 2019-12-30 2021-03-13 EPI_ISL_405278|A/guinea_fowl/Nigeria/OG-GF11T_19VIR8424-7/2019_H5N8|2019-07-05|H5N8 PB1 Panzootic 6 2021.832693 2021.435289 2022.027464 2022-03-22 2022-03-28 EPI_ISL_393462|A/American_Green-winged_Teal/Ohio/18OS01681/2018|2018-09-01|H5N2 PB1 Panzootic 6 2021.65809 2020.922721 2021.75562 2021-11-15 2021-12-27 EPI_ISL_400270|A/Common_Teal/Chany_Lake/40/2019|2019-09-07|H12N5 PB1 Panzootic 11 2020.537055 2020.270642 2020.685397 14/12/2020 22/2/2021 EPI_ISL_1263541|A/mallard/France/20P017917/2020|2020-12-07|H5N3 PB1 Panzootic 10 2019.717662 2019.277314 2020.116299 8/1/2021 25/3/2022 EPI_ISL_1273442|A/mallard/Novosibirsk_region/3449k/2020|2020-08-29|H4N6 PB1 Panzootic 8 2019.167752 2018.725122 2019.682848 1/2/2021 9/2/2022 EPI_ISL_4073125|A/duck/Bangladesh/44407/2020|2020-02-22|H6N1 PB1 JKE-2019 10 2020.22995 2019.771093 2020.519958 2/12/2020 28/12/2020 EPI_ISL_370663|A/duck/Hokkaido/56/2017|2017-10-31|H12N2 PB1 JKE-2019 107 2019.565955 2019.317228 2019.74197 23/11/2020 13/3/2021 EPI_ISL_1184529|A/mallard/Russia_Primorje/48T/2020|2020-09-08|H9N2 PB1 Panzootic 593 2019.08343 2018.614782 2019.368256 16/10/2020 14/4/2022 EPI_ISL_338357|A/Tufted_Duck/Novosibirsk_region/989k/2018|2018-10-01|H3N8 PB1 Panzootic 18 2020.669248 2020.297028 2020.810494 28/10/2021 10/2/2022 EPI_ISL_2234830|A/turkey/Ireland/020140_20VIR5487-6/2020|2021-03-01|H6N1 PB1 Panzootic 13 2020.668934 2020.214814 2020.782638 16/2/2021 21/5/2021 EPI_ISL_7987337|A/turkey/Italy/21VIR8480-1/2021|2021-10-11|H5N1 PB1 Panzootic 5 2019.13987 2018.820987 2019.719029 20/5/2021 12/11/2021 EPI_ISL_1005678|A/common_teal/Chany_Lake/4/2020|2020-08-29|H10N7 PB1 JKE-2019 195 2017.819208 2017.4459 2018.168591 30/12/2019 3/3/2021 EPI_ISL_400267|A/Common_Teal/Chany_Lake/29/2019|2019-09-07|H14N3 PB1 Panzootic 1003 2018.560144 2018.252226 2018.83619 11/1/2020 1/3/2022 EPI_ISL_6124150|A/chicken/Egypt/A19671/2021_(H5N8)|2021-02-10|H5N8 PB2 Panzootic 18 2020.889874 2020.738475 2021.003513 28/10/2021 10/2/2022 EPI_ISL_815400|A/mallard/Netherlands/18015513-001/2018|2018-10-11|H1N1 PB2 Panzootic 389 2017.762485 2016.404309 2018.09012 16/10/2020 29/3/2022 EPI_ISL_9261739|A/Mallard/Netherlands/16/2021|2021-12-23|H5N2 PB2 Panzootic 7 2021.752887 2021.092667 2021.855469 28/11/2021 2/3/2022 EPI_ISL_400269|A/Common_Teal/Chany_Lake/38/2019|2019-09-07|H3N8 PB2 Panzootic 17 2020.679108 2020.219763 2020.787018 8/1/2021 25/3/2022 EPI_ISL_400286|A/Shoveler/Chany_Lake/62/2019|2019-09-07|H1N1 PB2 Panzootic 5 2020.890658 2020.803066 2021.217135 15/11/2021 27/12/2021 EPI_ISL_1241001|A/mallard/Novosibirsk_region/3541k/2020|2020-08-29|H12N5 PB2 Panzootic 5 2019.097628 2018.736713 2019.525078 20/5/2021 12/11/2021 EPI_ISL_1241001|A/mallard/Novosibirsk_region/3541k/2020|2020-08-29|H12N5 PB2 JKE-2019 187 2018.811771 2018.555272 2019.065778 30/12/2019 3/3/2021 EPI_ISL_405278|A/guinea_fowl/Nigeria/OG-GF11T_19VIR8424-7/2019_H5N8|2019-07-05|H5N8 PB2 JKE-2019 19 2018.762497 2018.218368 2019.16649 2/12/2020 24/2/2021 EPI_ISL_9955603|A/duck/Bangladesh/17D1586/2021|2021-01-10|H6N1 PB2 Panzootic 11 2020.677632 2020.590996 2020.778987 14/12/2020 22/2/2021 EPI_ISL_1263541|A/mallard/France/20P017917/2020|2020-12-07|H5N3 PB2 Panzootic 127 2019.608231 2018.889271 2019.916125 27/10/2021 21/2/2022 EPI_ISL_7987335|A/duck/Italy/21VIR8024-3/2021|2021-09-23|H5N3 PB2 Panzootic 1031 2018.436987 2018.124927 2018.685853 11/1/2020 1/3/2022 EPI_ISL_4070847|A/chicken/Egypt/F17230B/2019|2019-06-25|H5N8 PB2 JKE-2019 107 2017.618143 2016.223424 2018.205582 22/12/2020 7/12/2020 EPI_ISL_4072050|A/mallard/South_Korea/JB22-3/2019|2019-09-29|H5N3 PB2 Panzootic 6 2021.59355 2021.172449 2021.891769 22/3/2022 28/3/2022 EPI_ISL_506170|A/long-tailed_duck/Wisconsin/18OS2993/2018|2018-11-30|H3N1 PB2 Panzootic 39 2021.562076 2021.346503 2021.788994 14/3/2022 31/3/2022 EPI_ISL_6795362|A/mallard/Alaska/AH0176804/2021|2021-07-30|H8N4 PB2 Panzootic 10 2021.374407 2020.829717 2021.745912 17/3/2022 28/3/2022 EPI_ISL_501826|A/Mallard_duck/Alberta/469/2019|2019-08-22|H4N6