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["Table S6. Differential expression of photosynthesis-related genes in plants after CYVCV infection"]
["Lightreaction.photosystem II"]
["BinCode","BinName","Gene-ID","Protein-ID","Symbol","description","log2(Infected-vs-Mock)","Pvalue","FDR","significant"]
["1.1.1.2","PS.lightreaction.photosystem II.PSII polypeptide subunits","ncbi_102614461","xp_006482864.1","PsbT","(at1g51400 : 60.1) Photosystem II 5 kD protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to UV-B, response to wounding, response to ozone; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast photosystem II; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem II subunit T (TAIR:AT3G21055.1); Has 88 Blast hits to 88 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (p31336|pst2_goshi : 57.8) Photosystem II 5 kDa protein, chloroplast precursor (PSII-T) (Light-regulated unknown 11 kDa protein) - Gossypium hirsutum (Upland cotton) & (reliability: 120.2) &  (original description: PREDICTED: photosystem II 5 kDa protein, chloroplastic-like [Citrus sinensis])",-1.8860002,2.93e-08,5.53e-07,"yes"]
["1.1.1.2","PS.lightreaction.photosystem II.PSII polypeptide subunits","ncbi_4271240","yp_740455.1","PsbA","(gnl|cdd|79222 : 680.0) no description available & (atcg00020 : 659.0) Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core; photosystem II reaction center protein A (PSBA); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II reaction centre protein PsbA/D1 (InterPro:IPR005867), Photosynthetic reaction centre, L/M (InterPro:IPR000484); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein D (TAIR:ATCG00270.1). & (p69556|psba_tobac : 658.0) Photosystem Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem II protein D1) - Nicotiana tabacum (Common tobacco) & (loc_os10g21200.1 : 653.0) no description available & (ipr000484 : 209.00461) Photosynthetic reaction centre, L/M & (reliability: 1318.0) &  (original description: photosystem II protein D1 (chloroplast) [Citrus sinensis])",-1.87008,0.00019,0.001247,"yes"]
["1.1.1.2","PS.lightreaction.photosystem II.PSII polypeptide subunits","ncbi_4271200","yp_740470.1","PsbD","(gnl|cdd|79223 : 670.0) no description available & (q9bbt0|psbd_lotja : 652.0) Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) - Lotus japonicus & (atcg00270 : 650.0) PSII D2 protein; photosystem II reaction center protein D (PSBD); FUNCTIONS IN: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport in photosystem II, photosynthesis, light harvesting in photosystem II; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosynthetic reaction centre, L/M (InterPro:IPR000484), Photosystem II reaction centre protein PsbD/D2 (InterPro:IPR005868); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein A (TAIR:ATCG00020.1). & (loc_osp1g00170.1 : 648.0) no description available & (ipr000484 : 175.93808) Photosynthetic reaction centre, L/M & (reliability: 1300.0) &  (original description: photosystem II protein D2 (chloroplast) [Citrus sinensis])",-1.3469157,0.000318,0.001955,"yes"]
["1.1.1.2","PS.lightreaction.photosystem II.PSII polypeptide subunits","ncbi_4271201","yp_740471.2","PsbC","(gnl|cdd|79253 : 889.0) no description available & (p06413|psbc_tobac : 798.0) Photosystem II 44 kDa reaction center protein (P6 protein) (CP43) - Nicotiana tabacum (Common tobacco) & (atcg00280 : 796.0) chloroplast gene encoding a CP43 subunit of  the photosystem II reaction center. promoter contains a blue-light responsive element.; photosystem II reaction center protein C (PSBC); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II protein PsbC (InterPro:IPR005869); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein B (TAIR:ATCG00680.1). & (loc_osp1g00180.1 : 783.0) no description available & (ipr000932 : 480.59842) Photosystem antenna protein-like & (reliability: 1592.0) &  (original description: photosystem II CP43 chlorophyll apoprotein (chloroplast) [Citrus sinensis])",-1.2901788,2.49e-05,0.000211,"yes"]
["1.1.1.2","PS.lightreaction.photosystem II.PSII polypeptide subunits","ncbi_102610576","xp_006475299.1","PsbQ","(at3g01440 : 264.0) Encodes a subunit of the NAD(P)H complex located in the chloroplast thylakoid lumen.; PsbQ-like 1 (PQL1); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthesis, light reaction, photosynthetic electron transport chain; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 165 Blast hits to 165 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (gnl|cdd|69290 : 160.0) no description available & (loc_os07g01480.2 : 152.0) no description available & (ipr008797 : 110.88076) Photosystem II PsbQ, oxygen evolving complex & (q41806|psbq2_maize : 58.5) Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (Ferredoxin-NADP reductase-binding protein) (BP) - Zea mays (Maize) & (reliability: 722.0413) &  (original description: PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Citrus sinensis])",-1.2013,0.004527,0.018706,"yes"]
["1.1.1.2","PS.lightreaction.photosystem II.PSII polypeptide subunits","ncbi_102608211","xp_015383608.1","PsbC","(gnl|cdd|79253 : 493.0) no description available & (p06004|psbc_pea : 442.0) Photosystem II 44 kDa reaction center protein (P6 protein) (CP43) - Pisum sativum (Garden pea) & (atcg00280 : 439.0) chloroplast gene encoding a CP43 subunit of  the photosystem II reaction center. promoter contains a blue-light responsive element.; photosystem II reaction center protein C (PSBC); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II protein PsbC (InterPro:IPR005869); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein B (TAIR:ATCG00680.1). & (loc_osp1g00180.1 : 435.0) no description available & (ipr000932 : 253.28436) Photosystem antenna protein-like & (reliability: 878.0) &  (original description: PREDICTED: uncharacterized protein LOC102608211 [Citrus sinensis])",-1.1898246,0.010995,0.039126,"yes"]
["1.1.1.2","PS.lightreaction.photosystem II.PSII polypeptide subunits","ncbi_102607932","xp_006473853.1","PsbP","(at1g76450 : 281.0) Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (loc_os08g40160.1 : 245.0) no description available & (chl4|510164 : 101.0) no description available & (reliability: 562.0) &  (original description: PREDICTED: psbP domain-containing protein 3, chloroplastic isoform X1 [Citrus sinensis])",-1.0686063,1.18e-08,2.45e-07,"yes"]
["1.1.1.1","PS.lightreaction.photosystem II.LHC-II","ncbi_107175516","xp_015382445.1","CB2G","(p27495|cb24_tobac : 477.0) Chlorophyll a-b binding protein 40, chloroplast precursor (LHCII type I CAB-40) (LHCP) - Nicotiana tabacum (Common tobacco) & (loc_os09g17740.1 : 441.0) no description available & (at2g34430 : 440.0) Photosystem II type I chlorophyll            a/b-binding protein; light-harvesting chlorophyll-protein complex II subunit B1 (LHB1B1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 8 components; EXPRESSED IN: shoot, cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2344 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2094; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). & (chl4|520113 : 364.0) no description available & (gnl|cdd|84819 : 182.0) no description available & (ipr022796 : 115.23461) Chlorophyll A-B binding protein & (reliability: 880.0) &  (original description: PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Citrus sinensis])",1.264807,5.99e-09,1.34e-07,"yes"]
["1.1.1.1","PS.lightreaction.photosystem II.LHC-II","ncbi_102612622","xp_006490395.1","CB2","(at1g76570 : 518.0) Chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.3 (TAIR:AT3G27690.1); Has 2289 Blast hits to 2229 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1997; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink). & (loc_os09g12540.1 : 459.0) no description available & (chl4|519213 : 284.0) no description available & (p27518|cb21_goshi : 215.0) Chlorophyll a-b binding protein 151, chloroplast precursor (LHCII type II CAB-151) (LHCP) - Gossypium hirsutum (Upland cotton) & (gnl|cdd|84819 : 147.0) no description available & (ipr022796 : 97.94645) Chlorophyll A-B binding protein & (reliability: 1036.0) &  (original description: PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Citrus sinensis])",2.1797185,2.12e-11,7.51e-10,"yes"]
[]
["Lightreaction.photosystem I"]
["BinCode","BinName","Gene-ID","Protein-ID","Symbol","description","log2(Infected-vs-Mock)","Pvalue","FDR","significant"]
["1.1.2.1","PS.lightreaction.photosystem I.LHC-I","ncbi_102613058","xp_006473329.1","Lhca5","(at1g45474 : 327.0) Encodes a component of the light harvesting complex of photosystem I.; photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink). & (loc_os02g52650.1 : 298.0) no description available & (chl4|523315 : 195.0) no description available & (p13869|cb12_pethy : 172.0) Chlorophyll a-b binding protein, chloroplast precursor (LHCI type II CAB) - Petunia hybrida (Petunia) & (gnl|cdd|84819 : 153.0) no description available & (ipr022796 : 105.58244) Chlorophyll A-B binding protein & (reliability: 654.0) &  (original description: PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Citrus sinensis])",-1.3742254,{"v":5.98e-11,"d":"5.98E-11"},{"v":1.96e-09,"d":"1.96E-09"},"yes"]
["1.1.2.1","PS.lightreaction.photosystem I.LHC-I","ncbi_102615942","xp_006465467.1","Lhca7","(at1g45474 : 180.0) Encodes a component of the light harvesting complex of photosystem I.; photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink). & (loc_os02g52650.1 : 168.0) no description available & (p13869|cb12_pethy : 122.0) Chlorophyll a-b binding protein, chloroplast precursor (LHCI type II CAB) - Petunia hybrida (Petunia) & (chl4|516832 : 112.0) no description available & (gnl|cdd|84819 : 91.1) no description available & (ipr022796 : 51.796307) Chlorophyll A-B binding protein & (reliability: 360.0) &  (original description: PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like [Citrus sinensis])",-1.3525221,{"v":6.11e-05,"d":"6.11E-05"},0.000462927,"yes"]
["1.1.2.2","PS.lightreaction.photosystem I.PSI polypeptide subunits","ncbi_4271131","yp_740475.1","PsaA","(ipr001280 : 1500.0) Photosystem I PsaA/PsaB & (gnl|cdd|79273 : 1460.0) no description available & (p06405|psaa_tobac : 1393.0) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A) - Nicotiana tabacum (Common tobacco) & (atcg00350 : 1391.0) Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome.; PSAA; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I, PsaA/PsaB (InterPro:IPR001280), Photosystem I psaA/psaB, conserved site (InterPro:IPR020586), Photosystem I psaA (InterPro:IPR006243); BEST Arabidopsis thaliana protein match is: Photosystem I, PsaA/PsaB protein (TAIR:ATCG00340.1). & (loc_osp1g00340.1 : 1367.0) no description available & (reliability: 2782.0) &  (original description: photosystem I P700 apoprotein A1 (chloroplast) [Citrus sinensis])",-1.2198242,0.000646819,0.003602534,"yes"]
["1.1.2.2","PS.lightreaction.photosystem I.PSI polypeptide subunits","ncbi_4271130","yp_740474.1","PsaB","(ipr001280 : 1500.0) Photosystem I PsaA/PsaB & (gnl|cdd|79272 : 1408.0) no description available & (p06512|psab_spiol : 1380.0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) - Spinacia oleracea (Spinach) & (atcg00340 : 1370.0) Encodes the D1 subunit of photosystem I  and II reaction centers.; PSAB; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis, light harvesting in photosystem I; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I psaB (InterPro:IPR006244), Photosystem I, PsaA/PsaB (InterPro:IPR001280), Photosystem I psaA/psaB, conserved site (InterPro:IPR020586); BEST Arabidopsis thaliana protein match is: Photosystem I, PsaA/PsaB protein (TAIR:ATCG00350.1). & (loc_osp1g00330.1 : 1362.0) no description available & (reliability: 2740.0) &  (original description: photosystem I P700 apoprotein A2 (chloroplast) [Citrus sinensis])",-1.1234819,0.000855703,0.004590477,"yes"]
[]
["Lightreaction.other electron carrier (ox/red)"]
["BinCode","BinName","Gene-ID","Protein-ID","Symbol","description","log2(Infected-vs-Mock)","Pvalue","FDR","significant"]
["1.1.5.3","PS.lightreaction.other electron carrier (ox/red).ferredoxin reductase","ncbi_102621724","xp_006466953.1","FENR1","(o04977|fenr1_tobac : 600.0) Ferredoxin--NADP reductase, leaf-type isozyme, chloroplast precursor (EC 1.18.1.2) (FNR) - Nicotiana tabacum (Common tobacco) & (at1g20020 : 586.0) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma; LEAF FNR 2 (ATLFNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6779 Blast hits to 6779 proteins in 1702 species: Archae - 20; Bacteria - 3601; Metazoa - 804; Fungi - 729; Plants - 614; Viruses - 0; Other Eukaryotes - 1011 (source: NCBI BLink). & (loc_os06g01850.1 : 559.0) no description available & (gnl|cdd|36373 : 287.0) no description available & (chl4|512341 : 283.0) no description available & (gnl|cdd|30718 : 192.0) no description available & (ipr001433 : 61.071186) Oxidoreductase FAD/NAD(P)-binding & (reliability: 1172.0) &  (original description: PREDICTED: ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic [Citrus sinensis])",-1.3132372,{"v":3.19e-11,"d":"3.19E-11"},{"v":1.09e-09,"d":"1.09E-09"},"yes"]
["1.1.5.2","PS.lightreaction.other electron carrier (ox/red).ferredoxin","ncbi_102626236","xp_006465658.1","PNSB3","(at3g16250 : 214.0) encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.; NDH-dependent cyclic electron flow 1 (NDF4); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT4G32590.1); Has 476 Blast hits to 476 proteins in 113 species: Archae - 4; Bacteria - 232; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink). & (loc_os07g30670.1 : 186.0) no description available & (gnl|cdd|30978 : 56.2) no description available & (reliability: 428.0) &  (original description: PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X1 [Citrus sinensis])",-1.1447765,{"v":4.58e-06,"d":"4.58E-06"},{"v":4.75e-05,"d":"4.75E-05"},"yes"]
["1.1.5.2","PS.lightreaction.other electron carrier (ox/red).ferredoxin","ncbi_102616043","xp_006464382.1","-","(at1g02180 : 249.0) ferredoxin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (loc_os02g58740.1 : 171.0) no description available & (reliability: 498.0) &  (original description: PREDICTED: uncharacterized protein LOC102616043 [Citrus sinensis])",1.4390999,0.000287277,0.001786721,"yes"]
[]
["Lightreaction.cytochrome b6/f."]
["BinCode","BinName","Gene-ID","Protein-ID","Symbol","description","log2(Infected-vs-Mock)","Pvalue","FDR","significant"]
["1.1.3.3","PS.lightreaction.cytochrome b6/f.cytochrome b6 (CYB6)","ncbi_4271129","yp_740506.1","Cyb6","(loc_osp1g00640.1 : 414.0) no description available & (gnl|cdd|79287 : 406.0) no description available & (p05642|cyb6_maize : 394.0) Cytochrome b6 - Zea mays (Maize) & (atcg00720 : 393.0) Encodes the cytochrome b(6) subunit of the cytochrome b6f complex.; photosynthetic electron transfer B (PETB); FUNCTIONS IN: heme binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cytochrome b6f complex, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b/b6 (InterPro:IPR016175), Di-haem cytochrome, transmembrane (InterPro:IPR016174), Cytochrome b/b6, N-terminal (InterPro:IPR005797); BEST Arabidopsis thaliana protein match is: apocytochrome b (TAIR:ATMG00220.1). & (gnl|cdd|39862 : 238.0) no description available & (reliability: 786.0) &  (original description: cytochrome b6 (chloroplast) [Citrus sinensis])",-1.3448786,0.001763713,0.008513168,"yes"]
[]
["Lightreaction.ATP synthase"]
["BinCode","BinName","Gene-ID","Protein-ID","Symbol","description","log2(Infected-vs-Mock)","Pvalue","FDR","significant"]
["1.1.4.1","PS.lightreaction.ATP synthase.alpha subunit","ncbi_4271228","yp_740460.1","ATPA","(gnl|cdd|79276 : 952.0) no description available & (q0zj35|atpa_vitvi : 829.0) ATP synthase subunit alpha (EC 3.6.3.14) (ATPase subunit alpha) (ATP synthase F1 sector subunit alpha) - Vitis vinifera (Grape) & (atcg00120 : 818.0) Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast.; ATP synthase subunit alpha (ATPA); FUNCTIONS IN: zinc ion binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: response to cold, defense response to bacterium, dATP biosynthetic process from ADP; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1 complex, alpha subunit, C-terminal (InterPro:IPR017458), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1 complex, alpha subunit (InterPro:IPR005294), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, alpha subunit protein (TAIR:AT2G07698.1). & (loc_os04g16740.1 : 762.0) no description available & (chl4|519346 : 497.0) no description available & (gnl|cdd|36567 : 284.0) no description available & (ipr000194 : 166.33086) ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain & (reliability: 1636.0) &  (original description: ATP synthase CF1 alpha subunit (chloroplast) [Citrus sinensis])",-1.1939145,{"v":1.09e-05,"d":"1.09E-05"},0.000103165,"yes"]
[]
["Calvin cycle"]
["BinCode","BinName","Gene-ID","Protein-ID","Symbol","description","log2(Infected-vs-Mock)","Pvalue","FDR","significant"]
["1.3.1","PS.calvin cycle.rubisco large subunit","ncbi_4271213","yp_740483.1","RbcL","(ipr000685 : 1500.0) Ribulose bisphosphate carboxylase, large subunit, C-terminal & (gnl|cdd|79258 : 982.0) no description available & (q9mtp9|rbl_oenho : 946.0) Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) - Oenothera hookeri (Hooker's evening primrose) & (loc_osp1g00420.1 : 926.0) no description available & (atcg00490 : 917.0) large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.; RBCL; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: response to cadmium ion, carbon fixation, peptidyl-cysteine S-nitrosylation, response to abscisic acid stimulus; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, large subunit, C-terminal (InterPro:IPR000685), Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal (InterPro:IPR017443), Ribulose bisphosphate carboxylase, large subunit, N-terminal (InterPro:IPR017444), Ribulose bisphosphate carboxylase, large chain, active site (InterPro:IPR020878); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase large chain, catalytic domain (TAIR:AT2G07732.1). & (reliability: 1834.0) &  (original description: ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit (chloroplast) [Citrus sinensis])",-1.6950653,{"v":5.68e-05,"d":"5.68E-05"},0.000433879,"yes"]
["1.3.2","PS.calvin cycle.rubisco small subunit","ncbi_102612348","xp_006474196.1","RbcS","(loc_os02g05830.1 : 199.0) no description available & (o65349|rbs_capan : 193.0) Ribulose bisphosphate carboxylase small chain, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit) - Capsicum annuum (Bell pepper) & (at5g38410 : 189.0) Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast ribulose bisphosphate carboxylase complex, apoplast, chloroplast, membrane; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (gnl|cdd|58643 : 162.0) no description available & (chl4|519412 : 159.0) no description available & (ipr000894 : 85.19565) Ribulose bisphosphate carboxylase, small chain & (reliability: 527.0924) &  (original description: PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like isoform X1 [Citrus sinensis])",-1.3788304,0.00512456,0.020813596,"yes"]
["1.3.11","PS.calvin cycle.RPE","ncbi_102609480","xp_006477481.1","RPE","(at5g61410 : 474.0) Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA; D-ribulose-5-phosphate-3-epimerase (RPE); FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: response to cold, carbohydrate metabolic process, response to nematode, embryo development ending in seed dormancy; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43157|rpe_spiol : 474.0) Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) - Spinacia oleracea (Spinach) & (loc_os03g07300.1 : 428.0) no description available & (chl4|513098 : 367.0) no description available & (gnl|cdd|81646 : 328.0) no description available & (gnl|cdd|38321 : 287.0) no description available & (ipr000056 : 201.07993) Ribulose-phosphate 3-epimerase & (reliability: 1299.8899) &  (original description: PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic isoform X2 [Citrus sinensis])",-1.2739686,{"v":2.65e-09,"d":"2.65E-09"},{"v":6.37e-08,"d":"6.37E-08"},"yes"]