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["Additional file 3: Table S3. DEGs related to flavonoid metabolic pathway in FL, IW, and SW."]
["Gene ID","KO ID","EC Number","Annotation"]
["MTCONS_00092662","K10775","4.3.1.24","phenylalanine ammonia-lyase (PAL)"]
["CSA023534.1","K10775","4.3.1.24","phenylalanine ammonia-lyase (PAL)"]
["CSA022024.1","K10775","4.3.1.24","phenylalanine ammonia-lyase (PAL)"]
["CSA032883.1","K10775","4.3.1.24","phenylalanine ammonia-lyase (PAL)"]
["CSA016076.1","K10775","4.3.1.24","phenylalanine ammonia-lyase (PAL)"]
["CSA028450.1","K10775","4.3.1.24","phenylalanine ammonia-lyase (PAL)"]
["CSA032295.1","K00487","1.14.13.11","cinnamate 4-hydroxylase (C4H)"]
["CSA001158.1","K00487","1.14.13.11","cinnamate 4-hydroxylase (C4H)"]
["MTCONS_00081440","K00487","1.14.13.11","cinnamate 4-hydroxylase (C4H)"]
["MTCONS_00081438","K00487","1.14.13.11","cinnamate 4-hydroxylase (C4H)"]
["CSA022101.1","K00487","1.14.13.11","cinnamate 4-hydroxylase (C4H)"]
["MTCONS_00025256","K01904","6.2.1.12","4-coumarate CoA ligase (4CL)"]
["CSA016711.1","K01904","6.2.1.12","4-coumarate CoA ligase (4CL)"]
["CSA015903.1","K01904","6.2.1.12","4-coumarate CoA ligase (4CL)"]
["MTCONS_00094929","K00660","2.3.1.74","chalcone synthase (CHS)"]
["CSA029773.1","K00660","2.3.1.74","chalcone synthase (CHS)"]
["CSA029707.1","K00660","2.3.1.74","chalcone synthase (CHS)"]
["CSA024718.1","K00660","2.3.1.74","chalcone synthase (CHS)"]
["CSA029775.1","K00660","2.3.1.74","chalcone synthase (CHS)"]
["MTCONS_00000269","K00660","2.3.1.74","chalcone synthase (CHS)"]
["MTCONS_00060938","K01859","5.5.1.6","chalcone isomerase (CHI)"]
["MTCONS_00008533","K01859","5.5.1.6","chalcone isomerase (CHI)"]
["MTCONS_00030933","K01859","5.5.1.6","chalcone isomerase (CHI)"]
["CSA013922.1","K01859","5.5.1.6","chalcone isomerase (CHI)"]
["MTCONS_00000123","K01859","5.5.1.6","chalcone isomerase (CHI)"]
["CSA008201.1","K00475","1.14.11.9","flavonoid 3-hydroxylase (F3H)"]
["CSA011009.1","K00475","1.14.11.9","flavonoid 3-hydroxylase (F3H)"]
["CSA004930.1","K00475","1.14.11.9","flavonoid 3-hydroxylase (F3H)"]
["CSA013326.1","K00475","1.14.11.9","flavonoid 3-hydroxylase (F3H)"]
["MTCONS_00068195","K00475","1.14.11.9","flavonoid 3-hydroxylase (F3H)"]
["CSA023049.1","K05280","1.14.13.21","flavonoid 3′-hydroxylase (F3'H)"]
["MTCONS_00092514","K05280","1.14.13.21","flavonoid 3′-hydroxylase (F3'H)"]
["MTCONS_00044513","K05280","1.14.13.21","flavonoid 3′-hydroxylase (F3'H)"]
["CSA027578.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA035082.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["MTCONS_00031810","K05278","1.14.11.23","flavonol synthase (FLS)"]
["MTCONS_00024759","K05278","1.14.11.23","flavonol synthase (FLS)"]
["MTCONS_00101854","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA001007.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA002931.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA026568.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA022659.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA003707.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["MTCONS_00091218","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA006950.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA008358.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA020720.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["MTCONS_00037391","K05278","1.14.11.23","flavonol synthase (FLS)"]
["MTCONS_00071366","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA012133.1","K05278","1.14.11.23","flavonol synthase (FLS)"]
["CSA003949.1","K13082","1.1.1.219","dihydroflavonol 4-reductase (DFR)"]
["MTCONS_00044470","K13082","1.1.1.219","dihydroflavonol 4-reductase (DFR)"]
["MTCONS_00094682","K13082","1.1.1.219","dihydroflavonol 4-reductase (DFR)"]
["MTCONS_00035874","K13082","1.1.1.219","dihydroflavonol 4-reductase (DFR)"]
["MTCONS_00094683","K13082","1.1.1.219","dihydroflavonol 4-reductase (DFR)"]
["MTCONS_00092979","K13082","1.1.1.219","dihydroflavonol 4-reductase (DFR)"]
["CSA002127.1","K13082","1.1.1.219","dihydroflavonol 4-reductase (DFR)"]
["CSA011508.1","K05277","1.14.11.19","anthocyanidin synthase (ANS)"]
["MTCONS_00062357","K05277","1.14.11.19","anthocyanidin synthase (ANS)"]
["MTCONS_00006348","K05277","1.14.11.19","anthocyanidin synthase (ANS)"]
["CSA000829.1","K05277","1.14.11.19","anthocyanidin synthase (ANS)"]
["MTCONS_00062358","K05277","1.14.11.19","anthocyanidin synthase (ANS)"]
["MTCONS_00086693","K08695","1.3.1.77","anthocyanidin reductase (ANR)"]
["MTCONS_00024351","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA016481.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["MTCONS_00020170","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["MTCONS_00005860","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA008619.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA004850.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA020799.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA006900.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["MTCONS_00090853","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA000931.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA029544.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["MTCONS_00007750","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["CSA010774.1","K09753","1.2.1.44","cinnamoyl-CoA reductase (CCR)"]
["MTCONS_00066601","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00091927","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00048376","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA036047.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00033147","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00092645","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA014391.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA026155.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA026158.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA032745.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA008963.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA008965.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00064997","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA002499.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00054532","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA020376.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00062734","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA008405.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00033221","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA005610.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00088190","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA008028.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA005213.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA019604.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA008960.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00098912","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00009653","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00087490","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA009568.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00099975","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA008029.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA035738.1","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00062735","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00033222","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["MTCONS_00099976","K00083","1.1.1.195","cinnamyl alcohol dehydrogenase (CAD)"]
["CSA005609.1","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["CSA021003.1","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00030126","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00038976","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00051576","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00062378","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00070351","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00002944","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00078355","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00085722","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["CSA027815.1","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["MTCONS_00032215","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]
["CSA008809.1","K13065","2.3.1.133","hydroxycinnamoyltransferase (HCT)"]