{"text_format":"3","workbook":"xlsx","n_sheets":2,"sheets":["genemania-interactions","genemania-functions"],"read":"whole","date_system":"1900"}

{"sheet":"genemania-interactions","index":0,"n_rows":162,"n_cols":5,"rows_kept":162}
["Gene 1","Gene 2","Weight","Network group","Network"]
["U2AF2","NUP93",0.011701499,"Co-expression","Ramaswamy-Golub-2001"]
["ATP6AP2","PFKFB1",0.009140463,"Co-expression","Wang-Maris-2006"]
["U2AF2","PFKFB4",0.011117225,"Co-expression","Wang-Maris-2006"]
["PFKFB3","PFKFB1",0.023115592,"Co-expression","Mallon-McKay-2013"]
["TADA3","PKM",0.019730426,"Co-expression","Bild-Nevins-2006 B"]
["NUP93","TPI1",0.012277103,"Co-expression","Bild-Nevins-2006 B"]
["PFKP","TPI1",0.00963497,"Co-expression","Bild-Nevins-2006 B"]
["PFKL","ARAF",0.014617326,"Co-expression","Bild-Nevins-2006 B"]
["GCKR","GCK",0.003288036,"Co-expression","Bild-Nevins-2006 B"]
["PFKFB4","PFKFB3",0.018693026,"Co-expression","Bild-Nevins-2006 B"]
["U2AF2","PFKFB4",0.019221209,"Co-expression","Bild-Nevins-2006 B"]
["GCK","PKLR",0.0074343,"Co-expression","Burington-Shaughnessy-2008"]
["TPI1","NUP205",0.0057358295,"Co-expression","Burington-Shaughnessy-2008"]
["TPR","NUPL2",0.019561036,"Co-expression","Dobbin-Giordano-2005"]
["PFKL","ARAF",0.0050557517,"Co-expression","Bahr-Bowler-2013"]
["U2AF2","ARAF",0.0071344273,"Co-expression","Bahr-Bowler-2013"]
["NUDCD3","ARAF",5.4388084E-3,"Co-expression","Innocenti-Brown-2011"]
["GCK","PFKFB1",0.0088681,"Co-expression","Innocenti-Brown-2011"]
["GCK","PKLR",0.014411523,"Co-expression","Innocenti-Brown-2011"]
["GLE1","ARAF",0.0018733427,"Co-expression","Innocenti-Brown-2011"]
["TADA3","ARAF",0.00472862,"Co-expression","Innocenti-Brown-2011"]
["PFKP","PKM",0.010762784,"Co-expression","Innocenti-Brown-2011"]
["PFKL","ARAF",0.0049131853,"Co-expression","Innocenti-Brown-2011"]
["PFKFB3","PFKP",0.009705469,"Co-expression","Innocenti-Brown-2011"]
["TPI1","PKM",0.012407696,"Co-expression","Rieger-Chu-2004"]
["PFKP","PKM",0.015317133,"Co-expression","Rieger-Chu-2004"]
["ATP6AP2","ISCU",0.009246796,"Co-expression","Rieger-Chu-2004"]
["GCKR","PFKFB1",0.03214949,"Co-expression","Rieger-Chu-2004"]
["TPR","NUP93",0.008396909,"Co-expression","Rieger-Chu-2004"]
["NUP93","NUPL2",0.0047794245,"Co-expression","Noble-Diehl-2008"]
["PFKL","GCK",0.0210789,"Co-expression","Noble-Diehl-2008"]
["ATP6AP2","ISCU",0.0039954456,"Co-expression","Noble-Diehl-2008"]
["TPI1","PKM",0.025897708,"Co-expression","Roth-Zlotnik-2006"]
["GCKR","PKLR",0.007896763,"Co-expression","Roth-Zlotnik-2006"]
["GCKR","SREBF1",0.007556411,"Co-expression","Roth-Zlotnik-2006"]
["NUP205","NUPL2",0.009689746,"Co-expression","Perou-Botstein-2000"]
["NUP93","TPI1",0.0067484463,"Co-expression","Perou-Botstein-2000"]
["PFKP","TPI1",0.006984903,"Co-expression","Perou-Botstein-2000"]
["PFKP","NUP93",0.008737005,"Co-expression","Perou-Botstein-2000"]
["NUP93","NUP205",2.9132434E-3,"Co-expression","Chen-Brown-2002"]
["PFKL","ARAF",0.011636885,"Co-expression","Chen-Brown-2002"]
["GCKR","ISCU",0.0059384475,"Co-expression","Chen-Brown-2002"]
["SREBF1","PKM",0.011110414,"Co-expression","Perou-Botstein-1999"]
["GLE1","NUPL2",0.012952327,"Co-expression","Wu-Garvey-2007"]
["TADA3","SREBF1",0.013014684,"Co-expression","Wu-Garvey-2007"]
["TPI1","PFKFB1",0.024885323,"Co-expression","Wu-Garvey-2007"]
["TPI1","PKM",0.015652632,"Co-localization","Johnson-Shoemaker-2003"]
["ARAF","PKM",0.7962252,"Co-localization","Chen-Huang-2014"]
["NUP205","NUPL2",0.013856717,"Pathway","Wu-Stein-2010"]
["SREBF1","PKM",0.44562814,"Pathway","Wu-Stein-2010"]
["SREBF1","PKLR",0.17357014,"Pathway","Wu-Stein-2010"]
["GCK","NUPL2",0.023331724,"Pathway","Wu-Stein-2010"]
["GCK","NUP205",0.023331724,"Pathway","Wu-Stein-2010"]
["NUP93","NUPL2",0.013856717,"Pathway","Wu-Stein-2010"]
["NUP93","NUP205",0.013856717,"Pathway","Wu-Stein-2010"]
["NUP93","GCK",0.023331724,"Pathway","Wu-Stein-2010"]
["PFKP","SREBF1",0.17374335,"Pathway","Wu-Stein-2010"]
["PFKL","PFKP",0.46027422,"Pathway","Wu-Stein-2010"]
["GCKR","NUPL2",0.029825892,"Pathway","Wu-Stein-2010"]
["GCKR","NUP205",0.029825892,"Pathway","Wu-Stein-2010"]
["GCKR","GCK",0.05022037,"Pathway","Wu-Stein-2010"]
["GCKR","NUP93",0.029825892,"Pathway","Wu-Stein-2010"]
["TPR","NUPL2",0.013631245,"Pathway","Wu-Stein-2010"]
["TPR","NUP205",0.013631245,"Pathway","Wu-Stein-2010"]
["TPR","GCK",0.022952078,"Pathway","Wu-Stein-2010"]
["TPR","NUP93",0.013631245,"Pathway","Wu-Stein-2010"]
["TPR","GCKR",0.029340576,"Pathway","Wu-Stein-2010"]
["PHAX","NUPL2",0.029593049,"Pathway","Wu-Stein-2010"]
["PHAX","NUP205",0.029593049,"Pathway","Wu-Stein-2010"]
["PHAX","NUP93",0.029593049,"Pathway","Wu-Stein-2010"]
["PHAX","TPR",0.029111521,"Pathway","Wu-Stein-2010"]
["U2AF2","NUPL2",0.009677524,"Pathway","Wu-Stein-2010"]
["U2AF2","NUP205",0.009677524,"Pathway","Wu-Stein-2010"]
["U2AF2","NUP93",0.009677524,"Pathway","Wu-Stein-2010"]
["U2AF2","TPR",0.009520055,"Pathway","Wu-Stein-2010"]
["NUP205","NUPL2",0.014839788,"Pathway","REACTOME"]
["GCK","NUPL2",0.02790617,"Pathway","REACTOME"]
["GCK","NUP205",0.02790617,"Pathway","REACTOME"]
["NUP93","NUPL2",0.016988201,"Pathway","REACTOME"]
["NUP93","NUP205",0.016988201,"Pathway","REACTOME"]
["NUP93","GCK",0.031946257,"Pathway","REACTOME"]
["GCKR","NUPL2",0.032420035,"Pathway","REACTOME"]
["GCKR","NUP205",0.032420035,"Pathway","REACTOME"]
["GCKR","GCK",0.06096577,"Pathway","REACTOME"]
["GCKR","NUP93",0.037113614,"Pathway","REACTOME"]
["TPR","NUPL2",0.016988201,"Pathway","REACTOME"]
["TPR","NUP205",0.016988201,"Pathway","REACTOME"]
["TPR","GCK",0.031946257,"Pathway","REACTOME"]
["TPR","NUP93",0.019447649,"Pathway","REACTOME"]
["TPR","GCKR",0.037113614,"Pathway","REACTOME"]
["PHAX","NUPL2",0.031171001,"Pathway","REACTOME"]
["PHAX","NUP205",0.031171001,"Pathway","REACTOME"]
["PHAX","NUP93",0.035683747,"Pathway","REACTOME"]
["PHAX","TPR",0.035683747,"Pathway","REACTOME"]
["U2AF2","NUPL2",0.0114609925,"Pathway","REACTOME"]
["U2AF2","NUP205",0.0114609925,"Pathway","REACTOME"]
["U2AF2","PKM",0.06495698,"Physical Interactions","Whisenant-Salomon-2015"]
["U2AF2","TPI1",0.06495698,"Physical Interactions","Whisenant-Salomon-2015"]
["NUDCD3","NUP205",0.66337395,"Physical Interactions","Kristensen-Foster-2012"]
["TADA3","NUP205",0.60778123,"Physical Interactions","Havugimana-Emili-2012"]
["PFKL","PFKP",0.24222773,"Physical Interactions","Havugimana-Emili-2012"]
["U2AF2","TPR",0.01624935,"Physical Interactions","Havugimana-Emili-2012"]
["NUP93","NUP205",0.38956583,"Physical Interactions","Wan-Emili-2015"]
["PFKP","PKM",0.018279472,"Physical Interactions","Wan-Emili-2015"]
["PFKL","PKM",0.03866299,"Physical Interactions","Wan-Emili-2015"]
["TADA3","SREBF1",0.023320053,"Physical Interactions","BIOGRID-SMALL-SCALE-STUDIES"]
["GCKR","GCK",0.36659053,"Physical Interactions","BIOGRID-SMALL-SCALE-STUDIES"]
["TPR","NUP205",0.20458032,"Physical Interactions","BIOGRID-SMALL-SCALE-STUDIES"]
["TPR","NUP93",0.13763419,"Physical Interactions","BIOGRID-SMALL-SCALE-STUDIES"]
["PFKFB2","GCK",0.5202352,"Physical Interactions","BIOGRID-SMALL-SCALE-STUDIES"]
["TPR","PKM",0.18739356,"Physical Interactions","Hutchins-Peters-2010"]
["ARAF","PKM",0.019320013,"Physical Interactions","IREF-INTACT"]
["GCK","PFKFB1",0.4380309,"Physical Interactions","IREF-INTACT"]
["GCKR","GCK",0.5571382,"Physical Interactions","IREF-INTACT"]
["PFKFB3","GCK",0.5135192,"Physical Interactions","IREF-INTACT"]
["ARAF","PKM",0.070974134,"Physical Interactions","IREF-HPRD"]
["GLE1","NUPL2",0.76536685,"Physical Interactions","IREF-HPRD"]
["NUP93","NUP205",0.70710677,"Physical Interactions","IREF-HPRD"]
["GCKR","GCK",0.78375,"Physical Interactions","IREF-HPRD"]
["PFKFB2","GCK",0.2946743,"Physical Interactions","IREF-HPRD"]
["TPI1","PKM",0.2589321,"Predicted","I2D-vonMering-Bork-2002-Medium-Yeast2Human"]
["TPI1","PKLR",0.2589321,"Predicted","I2D-vonMering-Bork-2002-Medium-Yeast2Human"]
["PFKP","PKM",0.35095736,"Predicted","I2D-vonMering-Bork-2002-Medium-Yeast2Human"]
["PFKP","PKLR",0.35095736,"Predicted","I2D-vonMering-Bork-2002-Medium-Yeast2Human"]
["PFKL","PKM",0.35095736,"Predicted","I2D-vonMering-Bork-2002-Medium-Yeast2Human"]
["PFKL","PKLR",0.35095736,"Predicted","I2D-vonMering-Bork-2002-Medium-Yeast2Human"]
["ISCU","PKM",0.5781872,"Predicted","I2D-vonMering-Bork-2002-Low-Yeast2Human"]
["PKLR","PKM",0.43202198,"Predicted","Wu-Stein-2010"]
["GCK","PFKFB1",0.18446907,"Predicted","Wu-Stein-2010"]
["GLE1","NUPL2",0.70710677,"Predicted","Wu-Stein-2010"]
["TPI1","PKM",0.11826807,"Predicted","Wu-Stein-2010"]
["PFKFB3","PFKFB1",0.28550106,"Predicted","Wu-Stein-2010"]
["PFKFB2","PFKFB1",0.28550106,"Predicted","Wu-Stein-2010"]
["PFKFB2","PFKFB3",0.34891528,"Predicted","Wu-Stein-2010"]
["PFKFB4","PFKFB1",0.28550106,"Predicted","Wu-Stein-2010"]
["PFKFB4","PFKFB3",0.34891528,"Predicted","Wu-Stein-2010"]
["PFKFB4","PFKFB2",0.34891528,"Predicted","Wu-Stein-2010"]
["TPI1","PKM",0.016783582,"Predicted","Stuart-Kim-2003"]
["PFKL","PKM",0.036774915,"Predicted","Stuart-Kim-2003"]
["PFKL","TPI1",0.041611075,"Predicted","Stuart-Kim-2003"]
["ATP6AP2","PFKFB1",0.70710677,"Predicted","Stuart-Kim-2003"]
["PFKFB2","ATP6AP2",0.70710677,"Predicted","Stuart-Kim-2003"]
["PKLR","PKM",1,"Predicted","I2D-Yu-Vidal-2008-GoldStd-Yeast2Human"]
["GCKR","GCK",0.5,"Predicted","I2D-MINT-Rat2Human"]
["ISCU","PKM",0.76536685,"Predicted","I2D-BIND-Yeast2Human"]
["PKLR","PKM",0.5656903,"Shared protein domains","INTERPRO"]
["PFKL","PFKP",0.5,"Shared protein domains","INTERPRO"]
["PFKFB3","PFKFB1",0.086473435,"Shared protein domains","INTERPRO"]
["PFKFB2","PFKFB1",0.08716903,"Shared protein domains","INTERPRO"]
["PFKFB2","PFKFB3",0.08145293,"Shared protein domains","INTERPRO"]
["PFKFB4","PFKFB1",0.09254188,"Shared protein domains","INTERPRO"]
["PFKFB4","PFKFB3",0.086473435,"Shared protein domains","INTERPRO"]
["PFKFB4","PFKFB2",0.08716903,"Shared protein domains","INTERPRO"]
["PKLR","PKM",1,"Shared protein domains","PFAM"]
["PFKL","PFKP",0.5,"Shared protein domains","PFAM"]
["PFKFB3","PFKFB1",0.15190466,"Shared protein domains","PFAM"]
["PFKFB2","PFKFB1",0.15190466,"Shared protein domains","PFAM"]
["PFKFB2","PFKFB3",0.15190466,"Shared protein domains","PFAM"]
["PFKFB4","PFKFB1",0.15190466,"Shared protein domains","PFAM"]
["PFKFB4","PFKFB3",0.15190466,"Shared protein domains","PFAM"]
["PFKFB4","PFKFB2",0.15190466,"Shared protein domains","PFAM"]

{"sheet":"genemania-functions","index":1,"n_rows":47,"n_cols":4,"rows_kept":47}
["Function","FDR","Genes in network","Genes in genome"]
["glycolysis",{"v":1.07661721658568E-16,"d":"1.08E-16"},10,48]
["glucose catabolic process",{"v":4.26653530567839e-16,"d":"4.27E-16"},10,58]
["hexose catabolic process",{"v":2.89638422278193e-15,"d":"2.90E-15"},10,72]
["monosaccharide catabolic process",{"v":2.90659773500864E-15,"d":"2.91E-15"},10,74]
["single-organism carbohydrate catabolic process",{"v":4.009999259665E-14,"d":"4.01E-14"},10,97]
["carbohydrate catabolic process",{"v":5.23677640982996e-14,"d":"5.24E-14"},10,102]
["glucose metabolic process",{"v":5.23677640982996e-14,"d":"5.24E-14"},11,161]
["carbohydrate kinase activity",{"v":7.47898205186449e-14,"d":"7.48E-14"},7,17]
["hexose metabolic process",{"v":1.61391254848043e-13,"d":"1.61E-13"},11,182]
["monosaccharide metabolic process",{"v":6.81297919916347e-13,"d":"6.81E-13"},11,209]
["carbohydrate phosphorylation",{"v":1.36676720028684e-08,"d":"1.37E-08"},5,16]
["regulation of glucose transport",{"v":3.2041043104546e-07,"d":"3.20E-07"},6,69]
["cellular carbohydrate metabolic process",{"v":7.22819042259715e-07,"d":"7.23E-07"},7,153]
["glucose transport",1.8205788740595E-6,6,95]
["hexose transport",1.8205788740595E-6,6,95]
["monosaccharide transport",1.93755112846376e-06,6,97]
["carbohydrate transport",2.62614579408179E-6,6,103]
["nucleocytoplasmic transport",3.38627394136627e-05,7,279]
["nuclear transport",3.45230342539359e-05,7,282]
["mitotic nuclear envelope disassembly",9.93205762236954e-05,4,37]
["membrane disassembly",9.93205762236954e-05,4,37]
["nuclear envelope disassembly",9.93205762236954e-05,4,37]
["nuclear pore organization",0.000164381868267202,3,10]
["nuclear export",0.000194466989490422,5,114]
["nuclear envelope organization",0.000255195234714058,4,48]
["nucleus organization",0.00101033449843818,4,68]
["RNA export from nucleus",0.00152272205358897,4,76]
["nucleic acid transport",2.07771196858735E-3,4,85]
["RNA transport",2.07771196858735E-3,4,85]
["RNA localization",2.07771196858735E-3,4,84]
["establishment of RNA localization",2.07771196858735E-3,4,85]
["nucleobase-containing compound transport",0.00485410949569369,4,106]
["response to hexose",7.04542299257535E-3,3,37]
["response to monosaccharide",7.04542299257535E-3,3,37]
["nuclear pore",0.00909959588093008,3,41]
["response to carbohydrate",0.00909959588093008,3,41]
["pore complex",0.0134025185873479,3,47]
["gluconeogenesis",0.0157360461936384,3,50]
["hexose biosynthetic process",0.0172604511377007,3,52]
["monosaccharide biosynthetic process",0.0199295541259293,3,55]
["protein targeting to nucleus",0.0228131022439788,3,58]
["nuclear periphery",0.0246581618160696,3,60]
["mRNA export from nucleus",0.0350464267083366,3,68]
["mRNA transport",0.0357779479213604,3,69]
["nuclear envelope",0.0491539830335783,4,210]
["endomembrane system organization",0.0491539830335783,4,210]