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["Order","Family","Subfamily","Species","Accession","Reference"]
["Clupeiformes","Chirocentridae",null,"Chirocentrus dorab","AP018763","Saitoh et al., 2003 2"]
[null,"Chirocentridae",null,"Chirocentrus nudus","AP018761.1","Lavoué et al. 2018 1"]
[null,"Clupeidae","Alosinae","Alosa aestivalis","NC_037017 ","Lavoué et al., 2013"]
[null,"Clupeidae","Alosinae","Alosa alabamae","NC_028275.1","Renshaw et al. 2015 1"]
[null,"Clupeidae","Alosinae","Alosa alosa","AP009131.1","Lavoué et al., 2007"]
[null,"Clupeidae","Alosinae","Alosa fallax","MT410940.1","Lavoué et al., 2007"]
[null,"Clupeidae","Alosinae","Alosa mediocris","MG570462.1","Schroeter et al., 2020"]
[null,"Clupeidae","Alosinae","Alosa pseudoharengus","AP009132.1","Lavoué et al., 2007"]
[null,"Clupeidae","Alosinae","Alosa sapidissima","MG570434","Lavoué et al., 2013 2"]
[null,"Clupeidae","Alosinae","Brevoortia tyrannus","AP009618","Lavoué et al., 2007"]
[null,"Clupeidae","Alosinae","Sardina pilchardus","AP009233.1","Lavoué et al., 2007"]
[null,"Clupeidae","Alosinae","Sardinops melanostictus","AB032554","Inoue et al., 2000"]
[null,"Clupeidae","Clupeinae","Clupea harengus","AP009133","Lavoué et al., 2007"]
[null,"Clupeidae","Clupeinae","Clupea pallasii","AP009134","Broughton and Reneau, 2006 2"]
[null,"Clupeidae","Clupeinae","Ethmidium maculatum","AP011602.1","Lavoué et al., 2013"]
[null,"Clupeidae","Clupeinae","Hyperlophus vittatus","AP011593","Lavoué et al., 2010"]
[null,"Clupeidae","Clupeinae","Potamalosa richmondia","AP011594.1","Lavoué et al., 2013"]
[null,"Clupeidae","Clupeinae","Sprattus antipodum","AP011608.1","Lavoué et al., 2013"]
[null,"Clupeidae","Clupeinae","Sprattus muelleri","AP011607.1","Ye et al., 2018"]
[null,"Clupeidae","Clupeinae","Sprattus sprattus","AP009234.1","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Amblygaster sirm","AP018760.1","Lavoué et al. 2018 1"]
[null,"Clupeidae","Dorosomatinae","Anodontostoma chacunda","NC_021446.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Clupanodon thrissa","JX075099","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Dorosoma cepedianum","DQ536426","Broughton and Reneau, 2006 2"]
[null,"Clupeidae","Dorosomatinae","Dorosoma petenense","AP009136","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Escualosa thoracata","AP011601.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Ethmalosa fimbriata","AP009138.1","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Gudusia chapra","AP011603.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Harengula jaguana","AP011592","Lavoué et al., 2010"]
[null,"Clupeidae","Dorosomatinae","Hilsa kelee","AP011613.1","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Konosirus punctatus","AP011612.1","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Limnothrissa miodon",null,"This study"]
[null,"Clupeidae","Dorosomatinae","Microthrissa congica","AP011598","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Microthrissa royauxi","AP011596","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Nematalosa come","NC_021447.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Nematalosa erebi","NC_043853.1"]
[null,"Clupeidae","Dorosomatinae","Nematalosa japonica","AP009142.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Nematalosa nasus","NC_023824.1","Li and Zou, 2014"]
[null,"Clupeidae","Dorosomatinae","Odaxothrissa losera","AP011595.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Pellonula leonensis","AP009232","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Pellonula vorax","AP009231","Lavoué et al., 2007"]
[null,"Clupeidae","Dorosomatinae","Potamothrissa acutirostris","AP011597.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Potamothrissa obtusirostris","AP011599","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Sardinella albella","AP011605.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Sardinella fijiensis","NC_044472","Wang et al., 2019"]
[null,"Clupeidae","Dorosomatinae","Sardinella gibbosa","NC_037131.1","Sebastian et al. 2018 1"]
[null,"Clupeidae","Dorosomatinae","Sardinella jussieu","KY964441.1","Sektiana et al., 2017"]
[null,"Clupeidae","Dorosomatinae","Sardinella lemuru","NC_039553.1","Jiang et al. 2017 1"]
[null,"Clupeidae","Dorosomatinae","Sardinella longiceps","NC_033407.1","Sebastian et al. 2017 1"]
[null,"Clupeidae","Dorosomatinae","Sardinella maderensis","AP009143.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Stolothrissa tanganicae",null,"This study"]
[null,"Clupeidae","Dorosomatinae","Tenualosa ilisha","AP011610","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Tenualosa thibaudeaui","AP011604.1","Lavoué et al., 2013"]
[null,"Clupeidae","Dorosomatinae","Tenualosa toli","AP011600.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Clupeichthys aesarnensis","AP011584.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Clupeichthys goniognathus ","AP011589.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Clupeichthys perakensis","AP011585.1"]
[null,"Clupeidae","Ehiravinae","Clupeoides borneensis","AP011586.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Clupeonella cultriventris","AP009615.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Ehirava fluviatilis","AP011588.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Gilchristella aestuaria","AP011606","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Sundasalanx mekongensis","AP006232.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Sundasalanx praecox","AP011591.1","Lavoué et al., 2013"]
[null,"Clupeidae","Ehiravinae","Sundasalanx sp","AP011590.1","Lavoué et al., 2013"]
[null,"Clupeidae",null,"Clupeoides sp","AP011587.1","Lavoué et al., 2013"]
[null,"Clupeidae",null,"Jenkinsia lamprotaenia","AP006230","Saitoh et al., 2003"]
[null,"Clupeidae",null,"Spratelloides delicatulus","AP009144.1","Lavoué et al., 2007"]
[null,"Clupeidae",null,"Spratelloides gracilis","AP009145.1","Lavoué et al., 2007"]
[null,"Denticipitidae",null,"Denticeps clupeoides 3","AP018763.1","Lavoué et al. 2018 1"]
[null,"Dussumieriidae",null,"Dussumieria elopsoides","AP017947.1","Lavoué et al., 2017a"]
[null,"Dussumieriidae",null,"Etrumeus micropus","AP009139.1","Lavoué et al., 2013"]
[null,"Engraulidae","Coiliinae","Coilia brachygnathus","MK144335.1","Lavoué et al., 2013"]
[null,"Engraulidae","Coiliinae","Coilia grayii","MH465028.1","Jiang et al 2019 1"]
[null,"Engraulidae","Coiliinae","Coilia lindmani","AP011558.1","Lavoué et al., 2017"]
[null,"Engraulidae","Coiliinae","Coilia mystus","KF056322.1","Lewis and Lema, 2019"]
[null,"Engraulidae","Coiliinae","Coilia nasus","AP009135.1","Lavoué et al., 2013"]
[null,"Engraulidae","Coiliinae","Coilia reynaldi","AP011559.1","Lavoué et al., 2010"]
[null,"Engraulidae","Coiliinae","Lycothrissa crocodilus","AP011562.1","Lavoué et al., 2010"]
[null,"Engraulidae","Coiliinae","Setipinna melanochir","AP011565.1","Lavoué et al., 2010"]
[null,"Engraulidae","Coiliinae","Setipinna taty","MH465027.1","Jiang et al 2019 1"]
[null,"Engraulidae","Coiliinae","Setipinna tenuifilis","AP017950.1","Lavoué et al., 2007"]
[null,"Engraulidae","Coiliinae","Thryssa baelama","AP009616.1","Lavoué et al., 2010"]
[null,"Engraulidae","Coiliinae","Thryssa dussumieri","AP017953.1","Lavoué et al., 2017a"]
[null,"Engraulidae","Coiliinae","Thryssa hamiltonii","KX096870","Wang and Ou, 2016"]
[null,"Engraulidae","Coiliinae","Thryssa kammalensis","KU761588.1","Zhang and Gao, 2016"]
[null,"Engraulidae","Coiliinae","Thryssa setirostris","NC_038196.1","Chen et al. 2018 1"]
[null,"Engraulidae","Coiliinae","Thryssa vitrirostris","NC_039819.1","Jiang et al 2019 1"]
[null,"Engraulidae","Engraulinae","Amazonsprattus scintilla","AP009617.1","Lavoué et al., 2010"]
[null,"Engraulidae","Engraulinae","Anchoviella sp","AP011557.1","Lavoué et al., 2010"]
[null,"Engraulidae","Engraulinae","Encrasicholina heteroloba","AP017952.1","Lavoué et al., 2017"]
[null,"Engraulidae","Engraulinae","Encrasicholina pseudoheteroloba","AP017954.1","Lavoué et al., 2017"]
[null,"Engraulidae","Engraulinae","Encrasicholina punctifer","AP017955.1","Lavoué et al., 2010"]
[null,"Engraulidae","Engraulinae","Engraulis encrasicolus","AP009137","Lavoué et al., 2007"]
[null,"Engraulidae","Engraulinae","Engraulis japonicus","AP017957.1","Lavoué et al., 2017"]
[null,"Engraulidae","Engraulinae","Engraulis mordax","NC_041097.1","Lewis and Lema, 2019"]
[null,"Engraulidae","Engraulinae","Engraulis ringens","NC_042728.1","Jiang et al. 2019 1"]
[null,"Engraulidae","Engraulinae","Lycengraulis grossidens","AP011563.1","Jiang et al., 2019"]
[null,"Engraulidae","Engraulinae","Stolephorus chinensis","AP011566","Li and Zou, 2014"]
[null,"Engraulidae","Engraulinae","Stolephorus commersonnii","NC_033521.1","Qu & Ma 2017 1"]
[null,"Engraulidae","Engraulinae","Stolephorus insularis","NC_042729.1"]
[null,"Engraulidae","Engraulinae","Stolephorus waitei","NC_042684.1","Jiang et al., 2019"]
[null,"Pristigasteridae",null,"Ilisha africana","AP009140.1","Lavoué et al., 2007"]
[null,"Pristigasteridae",null,"Ilisha elongata","AP009141.1","Lavoué et al., 2007"]
[null,"Pristigasteridae",null,"Ilisha sirishai","AP018762.1","Lavoué et al. 2018 1"]
[null,"Pristigasteridae",null,"Opisthopterus tardoore","AP018759.1","Lavoué et al. 2018 1"]
[null,"Pristigasteridae",null,"Pellona ditchela","AP011609.1","Lavoué et al., 2013"]
[null,"Pristigasteridae",null,"Pellona flavipinnis","AP009619","Lavoué et al., 2010"]
["Cypriniformes","Cyprinidae","Cyprininae","Carassius auratus 3","KM659025.1","Hu et al. 2014 1"]
[null,"Cyprinidae","Cyprininae","Cyprinus carpio 3","MH202953","Ye et al., 2018"]
[null,"Cyprinidae","Danioninae","Danio rerio 3","NC_002333.2 ","Broughton et al., 2001"]
[null,"Gastromyzontidae",null,"Formosania lacustris 3","AP010774","Lavoué et al., 2007"]
["Gonorynchiformes","Chanidae",null,"Chanos chanos 3 ","AB054133","Saitoh et al., 2003"]
[null,"Gonorynchidae",null,"Gonorynchus greyi 3","AB054134","Saitoh et al., 2003"]

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["1 Source: direct submission NCBI"]
["2 Only partial D-loop available"]
["3 Outgroup species"]

{"sheet":"References","index":2,"n_rows":19,"n_cols":1,"rows_kept":19,"flags":["formulas_cached_only"]}
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["Broughton, R. E., & Reneau, P. C. (2006). Spatial covariation of mutation and nonsynonymous substitution rates in vertebrate mitochondrial genomes. Molecular Biology and Evolution, 23(8), 1516–1524. https://doi.org/10.1093/molbev/msl013"]
["Inoue, J. G., Miya, M., Tsukamoto, K., & Nishida, M. (2000). Complete mitochondrial DNA sequence of the Japanese sardine Sardinops melanostictus. Fisheries Science, 66(5), 924–932. https://doi.org/10.1046/j.1444-2906.2000.00148.x"]
["Jiang, H., Lv, Z., Gong, L., Liu, L., & Liu, B. (n.d.). Characterization of complete mitochondrial DNA in Stolephorus insularis. Direct Submission NCBI (25-JUN-2019)."]
["Lavoué, S., Bertrand, J. A. M., Chen, W. J., Ho, H. C., Motomura, H., Sado, T., & Miya, M. (2017). Phylogenetic position of the rainbow sardine Dussumieria (Dussumieriidae) and its bearing on the early evolution of the Clupeoidei. Gene, 623(March), 41–47. https://doi.org/10.1016/j.gene.2017.04.032"]
["Lavoué, S., Bertrand, J. A. M., Wang, H. Y., Chen, W. J., Ho, H. C., Motomura, H., … Miya, M. (2017). Molecular systematics of the anchovy genus Encrasicholina in the Northwest Pacific. PLoS ONE, 12(7), 1–16. https://doi.org/10.1371/journal.pone.0181329"]
["Lavoué, S., Miya, M., Musikasinthorn, P., Chen, W. J., & Nishida, M. (2013). Mitogenomic Evidence for an Indo-West Pacific Origin of the Clupeoidei (Teleostei: Clupeiformes). PLoS ONE, 8(2). https://doi.org/10.1371/journal.pone.0056485"]
["Lavoué, S., Miya, M., & Nishida, M. (2010). Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes. Molecular Phylogenetics and Evolution, 56(1), 480–485. https://doi.org/10.1016/j.ympev.2009.11.022"]
["Lavoué, S., Miya, M., Saitoh, K., Ishiguro, N. B., & Nishida, M. (2007). Phylogenetic relationships among anchovies, sardines, herrings and their relatives (Clupeiformes), inferred from whole mitogenome sequences. Molecular Phylogenetics and Evolution, 43(3), 1096–1105. https://doi.org/10.1016/j.ympev.2006.09.018"]
["Lewis, O. H., & Lema, S. C. (2019). Sequence and phylogenetic analysis of the mitochondrial genome for the Northern Anchovy, Engraulis mordax (Engraulidae: Clupeiformes). Mitochondrial DNA Part B: Resources, 4(1), 14–16. https://doi.org/10.1080/23802359.2018.1535846"]
["Li, M., & Zou, K. (2014). Complete mitochondrial genome of the Bloch’s gizzard shad Nematalosa nasus (Clupeiformes: Clupeidae). Mitochondrial DNA, 25(1), 52–53."]
["Saitoh, K., Miya, M., Inoue, J. G., Ishiguro, N. B., & Nishida, M. (2003). Mitochondrial genomics of ostariophysan fishes: Perspectives on phylogeny and biogeography. Journal of Molecular Evolution, 56(4), 464–472. https://doi.org/10.1007/s00239-002-2417-y"]
["Schmidt, D. J., & McDougall, C. (2019). Complete mitogenomes of five ecologically diverse Australian freshwater fishes. Mitochondrial DNA Part B: Resources, 4(1), 191–193. https://doi.org/10.1080/23802359.2018.1545546"]
["Schroeter, J. C., Maloy, A. P., Rees, C. B., & Bartron, M. L. (2020). Fish mitochondrial genome sequencing: expanding genetic resources to support species detection and biodiversity monitoring using environmental DNA. Conservation Genetics Resources, 12(3), 433–446. https://doi.org/10.1007/s12686-019-01111-0"]
["Sektiana, S. P., Andriyono, S., & Kim, H. W. (2017). Characterization of the complete mitochondrial genome of Mauritian sardinella, Sardinella jussieu (Lacepède, 1803), collected in the Banten Bay, Indonesia. Fisheries and Aquatic Sciences, 20(1), 1–9. https://doi.org/10.1186/s41240-017-0072-x"]
["Wang, P. F., & Ou, Y. J. (n.d.). The complete mitochondrial genome of Thryssa hamiltonii (Clupeiformes, Engraulidae) and its phylogenetic analysis. Direct Submission NCBI (18-APR-2016)."]
["Wang, Z., Liu, Y., Feng, W., Chen, L., Miao, Z., & Chen, J. (2019). The complete mitochondrial genome of Sardinella fijiensis (Clupeiformes: clupeidae) and phylogenetic studies of clupeidae. Mitochondrial DNA Part B: Resources, 4(1), 1413–1414. https://doi.org/10.1080/23802359.2019.1598301"]
["Ye, X., Lv, Y., Wei, L., Huang, J., Wen, Y., Zhang, G., … Liu, K. (2018). The complete mitochondrial genome of Jinbian carp Cyprinus carpio (Cypriniformes: Cyprinidae). Mitochondrial DNA Part B: Resources, 3(2), 1096–1097. https://doi.org/10.1080/23802359.2018.1495126"]
["Zhang, J., & Gao, T. (2016). The complete mitochondrial genome of Thryssa kammalensis (Clupeiformes: Engraulidae). Mitochondrial DNA Part B: Resources, 1(1), 12–13. https://doi.org/10.1080/23802359.2015.1137797"]