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["gene","locus","sample_1","sample_2","status","value_1","value_2","log2(fold_change)","test_stat","p_value","q_value","significant","GO","Representative Gene Model Name","Gene Description","Gene Model Type","Primary Gene Symbol"]
["AT1G01680","Chr1:246410-248367","cs","ls","OK",2.17075,0.121572,-4.15831,3.30673,0.000943903,0.0302705,"yes","GO:0016567 GO:0005634 GO:0004842 GO:0000151","AT1G01680.1","plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).","protein_coding","PLANT U-BOX 54 (PUB54)","PLANT U-BOX 54 (PUB54)"]
["AT1G02300","Chr1:453287-455463","cs","ls","OK",23.6433,56.5904,1.25913,-3.76754,0.000164861,0.00802124,"yes","GO:0004197 GO:0006508 GO:0050790 GO:0005576","AT1G02300.1","Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7127 Blast hits to 7085 proteins in 649 species: Archae - 51; Bacteria - 96; Metazoa - 3215; Fungi - 4; Plants - 1554; Viruses - 146; Other Eukaryotes - 2061 (source: NCBI BLink).","protein_coding"]
["AT1G02770","Chr1:604872-606693","cs","ls","OK",0.129625,7.3588,5.82705,-5.43617,{"v":5.44e-08,"d":"5.44E-08"},{"v":9.4e-06,"d":"9.40E-06"},"yes","GO:0008150 GO:0005634 GO:0003674","AT1G02770.1","Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G19060.1); Has 209 Blast hits to 208 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 209; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G04770","Chr1:1336370-1337849","cs","ls","OK",79.8165,28.3349,-1.49411,4.4636,{"v":8.06e-06,"d":"8.06E-06"},0.000683719,"yes","GO:0009658","AT1G04770.1","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","protein_coding"]
["AT1G05200","Chr1:1504959-1510281","cs","ls","OK",12.8711,4.77533,-1.43046,3.90239,{"v":9.52e-05,"d":"9.52E-05"},0.00513787,"yes","GO:0005217 GO:0071230 GO:0019722 GO:0006874 GO:0071260 GO:0005262 GO:0009611 GO:0006816 GO:0070417 GO:0008066 GO:0071311 GO:0009416 GO:0005515 GO:0005886 GO:0005576 GO:0009507","AT1G05200.1","Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.","protein_coding","GLUTAMATE RECEPTOR 3.4 (GLR3.4)","GLUTAMATE RECEPTOR 3.4 (ATGLR3.4)"]
["AT1G05575","Chr1:1661690-1662187","cs","ls","OK",6.67967,0.29885,-4.48228,3.59884,0.000319637,0.0131369,"yes","GO:0005783 GO:0009738 GO:0002679 GO:0009061 GO:0003674 GO:0009873 GO:0010200","AT1G05575.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G06640","Chr1:2032337-2034018","cs","ls","OK",27.8162,11.7796,-1.23963,3.24618,0.00116966,0.035341,"yes","GO:0005737 GO:0016706 GO:0016126 GO:0055114","AT1G06640.1","encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase","protein_coding"]
["AT1G07050","Chr1:2164187-2165239","cs","ls","OK",28.7992,80.1939,1.47746,-4.23463,{"v":2.29e-05,"d":"2.29E-05"},0.00156205,"yes","GO:0003674 GO:0005634 GO:0007623","AT1G07050.1","CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1772 Blast hits to 1772 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1711; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).","protein_coding"]
["AT1G07430","Chr1:2280834-2282828","cs","ls","OK",0.170212,1.98507,3.54379,-3.45521,0.000549859,0.0199913,"yes","GO:0008287 GO:0004722 GO:0048838 GO:0005886 GO:0009939 GO:0009788 GO:0010030","AT1G07430.1","highly ABA-induced PP2C gene 2 (HAI2); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 3 (TAIR:AT2G29380.1); Has 6753 Blast hits to 6737 proteins in 407 species: Archae - 6; Bacteria - 193; Metazoa - 1700; Fungi - 794; Plants - 2782; Viruses - 7; Other Eukaryotes - 1271 (source: NCBI BLink).","protein_coding","HIGHLY ABA-INDUCED PP2C GENE 2 (HAI2)","HIGHLY ABA-INDUCED PP2C GENE 2 (HAI2)"]
["AT1G07610","Chr1:2341541-2342123","cs","ls","OK",48.4691,116.751,1.2683,-3.37476,0.000738812,0.0255064,"yes","GO:0010167 GO:0005507 GO:0022626 GO:0015706 GO:0046688","AT1G07610.1","one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance.","protein_coding","METALLOTHIONEIN 1C (MT1C)","METALLOTHIONEIN 1C (MT1C)"]
["AT1G07780","Chr1:2410055-2412677","cs","ls","OK",13.0549,31.6387,1.2771,-3.16018,0.00157669,0.0444587,"yes","GO:0004640 GO:0000162 GO:0009507","AT1G07780.3","Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.","protein_coding","PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1)","TRANSIENT RECEPTOR POTENTIAL 6 (TRP6)"]
["AT1G08830","Chr1:2827060-2838469","cs","ls","OK",91.9587,36.2067,-1.34473,3.63747,0.000275324,0.0118044,"yes","GO:0071280 GO:0071329 GO:0035195 GO:0005515 GO:0071493 GO:0071472 GO:0005829 GO:0071484 GO:0006096 GO:0019430 GO:0005576 GO:0006094 GO:0008270 GO:0071457 GO:0010039 GO:0046686 GO:0004784 GO:0005507 GO:0005634 GO:0042742","AT1G08830.1","Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway.","protein_coding","COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1)","COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1)"]
["AT1G08890","Chr1:2848347-2852270","cs","ls","OK",1.9145,6.63619,1.79338,-3.15645,0.00159704,0.0449643,"yes","GO:0016021 GO:0009507 GO:0005351 GO:0055085 GO:0005886","AT1G08890.1","Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08900.2); Has 22268 Blast hits to 21798 proteins in 1696 species: Archae - 379; Bacteria - 7327; Metazoa - 4739; Fungi - 6227; Plants - 2471; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).","protein_coding"]
["AT1G09240","Chr1:2984880-2986130","cs","ls","OK",3.30907,15.2293,2.20235,-4.1709,{"v":3.03e-05,"d":"3.03E-05"},0.00194911,"yes","GO:0030410 GO:0010233 GO:0030418 GO:0009860 GO:0009555","AT1G09240.1","Encodes a nicotianamine synthase.","protein_coding","NICOTIANAMINE SYNTHASE 3 (NAS3)","ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3 (ATNAS3)"]
["AT1G09420","Chr1:3038461-3041873","cs","ls","OK",3.38697,17.6871,2.38463,-5.55647,{"v":2.75e-08,"d":"2.75E-08"},{"v":5.06e-06,"d":"5.06E-06"},"yes","GO:0004345 GO:0050661 GO:0006006 GO:0055114 GO:0009507","AT1G09420.2","Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.","protein_coding","GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4 (G6PD4)","GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4 (G6PD4)"]
["AT1G09500","Chr1:3066698-3068598","cs","ls","OK",5.67443,20.5888,1.85931,-3.27127,0.00107064,0.0331898,"yes","GO:0050662 GO:0045551 GO:0009809 GO:0004022 GO:0000166","AT1G09500.1","similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase","protein_coding"]
["AT1G10370","Chr1:3397080-3398358","cs","ls","OK",45.4826,98.5804,1.11598,-3.48016,0.00050111,0.0185935,"yes","GO:0004364 GO:0009407 GO:0009704 GO:0015824 GO:0006749 GO:0009651 GO:0048527 GO:0060416 GO:0009507","AT1G10370.1","Encodes GSTU17 (Glutathione S-Transferase U17). Functions as a negative component of stress-mediated signal transduction pathways in drought and salt stress responses.","protein_coding","EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9)","GLUTATHIONE S-TRANSFERASE 30 (GST30)"]
["AT1G10380","Chr1:3400605-3402324","cs","ls","OK",4.28889,12.9624,1.59566,-3.11148,0.00186153,0.0498694,"yes","GO:0003674 GO:0005576 GO:0008150","AT1G10380.1","Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 280 Blast hits to 279 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G10585","Chr1:3493939-3495144","cs","ls","OK",0.35669,3.87459,3.4413,-3.20496,0.00135081,0.0395781,"yes","GO:0005737 GO:0003700 GO:0005634 GO:0006865 GO:0006355","AT1G10585.1","basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1); Has 97 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G10760","Chr1:3581033-3590928","cs","ls","OK",95.9295,184.717,0.945272,-3.13951,0.00169228,0.0466576,"yes","GO:0009941 GO:0009631 GO:0007623 GO:0009570 GO:0005983 GO:0009610 GO:0005739 GO:0050521 GO:0005515 GO:0016310 GO:0010353 GO:0005524 GO:0019252","AT1G10760.1","Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.","protein_coding","STARCH EXCESS 1 (SEX1)","STARCH EXCESS 1 (SEX1)"]
["AT1G11070","Chr1:3690211-3693648","cs","ls","OK",3.63868,0.168965,-4.42862,4.87023,{"v":1.11e-06,"d":"1.11E-06"},0.000122252,"yes","GO:0005737","AT1G11070.1","BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in 152 species: Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).","protein_coding"]
["AT1G11210","Chr1:3755676-3756998","cs","ls","OK",3.50448,12.2552,1.80612,-3.11684,0.00182799,0.0491935,"yes","GO:0009409 GO:0009737 GO:0003674 GO:0006979 GO:0009414","AT1G11210.1","Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT1G12220","Chr1:4144571-4147911","cs","ls","OK",3.25593,0,"-1.79769e+308","-1.79769e+308",0.000201472,0.00925793,"yes","GO:0005622 GO:0009816 GO:0006499 GO:0000166 GO:0005515 GO:0005886 GO:0009626","AT1G12220.1","Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.","protein_coding","RESISTANT TO P. SYRINGAE 5 (RPS5)","RESISTANT TO P. SYRINGAE 5 (RPS5)"]
["AT1G12330","Chr1:4194657-4196749","cs","ls","OK",7.99796,27.2796,1.77012,-4.57597,{"v":4.74e-06,"d":"4.74E-06"},0.000439709,"yes","GO:0008150 GO:0009507","AT1G12330.1","unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).","protein_coding"]
["AT1G12350","Chr1:4198412-4200802","cs","ls","OK",7.21362,29.5522,2.03447,-4.97939,{"v":6.38e-07,"d":"6.38E-07"},{"v":7.63e-05,"d":"7.63E-05"},"yes","GO:0016020 GO:0004632 GO:0009507 GO:0015937","AT1G12350.1","At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4?-phospho-N-pantothenoylcysteine (PPC)","protein_coding","4-PHOSPHO-PANTO-THENOYLCYSTEINE SYNTHETASE (COAB)","4-PHOSPHO-PANTO-THENOYLCYSTEINE SYNTHETASE (ATCOAB)"]
["AT1G12400","Chr1:4221862-4222837","cs","ls","OK",9.77291,0.75876,-3.68707,3.92418,{"v":8.7e-05,"d":"8.70E-05"},0.00479881,"yes","GO:0005634 GO:0006289 GO:0003677","AT1G12400.1","Nucleotide excision repair, TFIIH, subunit TTDA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: Nucleotide excision repair, TFIIH, subunit TTDA (TAIR:AT1G62886.1); Has 174 Blast hits to 174 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).","protein_coding"]
["AT1G14250","Chr1:4868451-4871488","cs","ls","OK",27.128,0.135402,-7.64639,8.12411,{"v":4.44e-16,"d":"4.44E-16"},{"v":5.19e-13,"d":"5.19E-13"},"yes","GO:0005773 GO:0016787 GO:0005886","AT1G14250.1","GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14240.4); Has 1463 Blast hits to 1456 proteins in 234 species: Archae - 0; Bacteria - 39; Metazoa - 610; Fungi - 315; Plants - 332; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).","protein_coding"]
["AT1G15125","Chr1:5204624-5205912","cs","ls","OK",25.3789,0.88158,-4.84739,6.27813,{"v":3.43e-10,"d":"3.43E-10"},{"v":1.15e-07,"d":"1.15E-07"},"yes","GO:0008757 GO:0005634","AT1G15125.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G68040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G15180","Chr1:5224384-5226702","cs","ls","OK",20.1154,7.55514,-1.41277,3.47191,0.000516773,0.0189621,"yes","GO:0006855 GO:0005886 GO:0015297 GO:0015238","AT1G15180.1","MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 7522 Blast hits to 7471 proteins in 1793 species: Archae - 118; Bacteria - 4822; Metazoa - 149; Fungi - 328; Plants - 1330; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).","protein_coding"]
["AT1G15790","Chr1:5438252-5440087","cs","ls","OK",7.76425,0.69964,-3.47216,3.50734,0.000452611,0.0171991,"yes","GO:0005829 GO:0005634","AT1G15790.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G15890","Chr1:5461316-5464223","cs","ls","OK",1.70108,0,"-1.79769e+308","-1.79769e+308",0.000310051,0.0127693,"yes","GO:0006952 GO:0005634 GO:0006499 GO:0043531","AT1G15890.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).","protein_coding"]
["AT1G16130","Chr1:5525490-5528212","cs","ls","OK",0.79653,0.0378134,-4.39676,3.52327,0.000426253,0.0164302,"yes","GO:0010200 GO:0016021 GO:0050832 GO:0004674 GO:0005509 GO:0046777 GO:0005524","AT1G16130.1","wall-associated kinase like","protein_coding","WALL ASSOCIATED KINASE-LIKE 2 (WAKL2)","WALL ASSOCIATED KINASE-LIKE 2 (WAKL2)"]
["AT1G16260","Chr1:5559578-5562113","cs","ls","OK",5.82477,0.788968,-2.88416,4.44305,{"v":8.87e-06,"d":"8.87E-06"},0.000730568,"yes","GO:0006468 GO:0016021 GO:0004674 GO:0005576 GO:0005509 GO:0005524","AT1G16260.1","Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1); Has 123075 Blast hits to 119967 proteins in 4481 species: Archae - 119; Bacteria - 13868; Metazoa - 46954; Fungi - 10147; Plants - 33759; Viruses - 489; Other Eukaryotes - 17739 (source: NCBI BLink).","protein_coding"]
["AT1G17170","Chr1:5869845-5870840","cs","ls","OK",0.907532,6.71336,2.88701,-3.33867,0.000841807,0.0281798,"yes","GO:0005737 GO:0010583 GO:0004364 GO:0080129 GO:0006635 GO:0043161 GO:0009407 GO:0051788 GO:0043295","AT1G17170.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 24 (GSTU24)","GLUTATHIONE S-TRANSFERASE TAU 24 (ATGSTU24)"]
["AT1G17880","Chr1:6152408-6153982","cs","ls","OK",333.766,135.165,-1.30412,4.337,{"v":1.44e-05,"d":"1.44E-05"},0.00108608,"yes","GO:0003700 GO:0009651 GO:0005634 GO:0005515","AT1G17880.1","basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).","protein_coding","BASIC TRANSCRIPTION FACTOR 3 (BTF3)","(ATBTF3)"]
["AT1G18570","Chr1:6389410-6391267","cs","ls","OK",7.91657,1.47112,-2.42796,4.26308,{"v":2.02e-05,"d":"2.02E-05"},0.00144934,"yes","GO:0010200 GO:0000165 GO:0006612 GO:0031348 GO:0009697 GO:0009651 GO:0009733 GO:0010310 GO:0009737 GO:0016045 GO:0009862 GO:0005634 GO:0009867 GO:0052544 GO:0009682 GO:0050832 GO:0043900 GO:0009759 GO:0010363 GO:0003700 GO:0009625 GO:0009723 GO:0006355 GO","AT1G18570.1","Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.","protein_coding","MYB DOMAIN PROTEIN 51 (MYB51)","(BW51B)"]
["AT1G19960","Chr1:6928038-6928463","cs","ls","OK",83.4389,25.9962,-1.68242,3.34491,0.000823088,0.0277876,"yes","GO:0005575 GO:0009718 GO:0003674","AT1G19960.1","BEST Arabidopsis thaliana protein match is: transmembrane receptors (TAIR:AT2G32140.1); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 23; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).","protein_coding"]
["AT1G20050","Chr1:6949042-6950319","cs","ls","OK",34.1745,11.2943,-1.59733,3.80038,0.000144475,0.00715203,"yes","GO:0016126 GO:0006084 GO:0016132 GO:0047750 GO:0060964 GO:0019932 GO:0005886 GO:0000247","AT1G20050.1","C-8 sterol isomerase that also plays a role in miRNA function.","protein_coding","HYDRA1 (HYD1)","MIRNA ACTION DEFICIENT 4 (MAD4)"]
["AT1G20490","Chr1:7097292-7099695","cs","ls","OK",1.20402,0.075968,-3.98633,3.39964,0.000674756,0.0236236,"yes","GO:0009698 GO:0016207","AT1G20490.1","AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink).","protein_coding"]
["AT1G20590","Chr1:7131165-7132183","cs","ls","OK",0.647095,9.26743,3.84012,-3.84475,0.000120673,0.00621005,"yes","GO:0019901 GO:0016538 GO:0005634 GO:0000079","AT1G20590.1","Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 3281 Blast hits to 3278 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 1609; Fungi - 468; Plants - 793; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).","protein_coding"]
["AT1G21100","Chr1:7386838-7388428","cs","ls","OK",6.43332,0.425408,-3.91864,4.52437,{"v":6.06e-06,"d":"6.06E-06"},0.00054165,"yes","GO:0042343 GO:0046983 GO:0005634 GO:0008171 GO:0005829","AT1G21100.1","O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21130.1); Has 3375 Blast hits to 3370 proteins in 588 species: Archae - 3; Bacteria - 947; Metazoa - 107; Fungi - 659; Plants - 1542; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).","protein_coding","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 1 (IGMT1)","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 1 (IGMT1)"]
["AT1G21120","Chr1:7395227-7396773","cs","ls","OK",4.96793,26.6951,2.42586,-5.24051,{"v":1.6e-07,"d":"1.60E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0042343 GO:0046983 GO:0005634 GO:0008171 GO:0005829","AT1G21120.1","O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21110.1); Has 3310 Blast hits to 3305 proteins in 577 species: Archae - 1; Bacteria - 921; Metazoa - 104; Fungi - 640; Plants - 1542; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).","protein_coding","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 2 (IGMT2)","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 2 (IGMT2)"]
["AT1G21130","Chr1:7399061-7400605","cs","ls","OK",163.459,44.4982,-1.87711,6.00803,{"v":1.88e-09,"d":"1.88E-09"},{"v":5.25e-07,"d":"5.25E-07"},"yes","GO:0046983 GO:0005634 GO:0008171 GO:0005829","AT1G21130.1","O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21100.1); Has 3382 Blast hits to 3377 proteins in 592 species: Archae - 1; Bacteria - 963; Metazoa - 105; Fungi - 662; Plants - 1542; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).","protein_coding","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 4 (IGMT4)","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 4 (IGMT4)"]
["AT1G21250","Chr1:7439265-7442113","cs","ls","OK",12.9755,3.47446,-1.90093,4.57066,{"v":4.86e-06,"d":"4.86E-06"},0.000448908,"yes","GO:0006468 GO:0010363 GO:0005515 GO:0004674 GO:0005773 GO:0009615 GO:0006612 GO:0000165 GO:0050832 GO:0031348 GO:0009867 GO:0005509 GO:0007166 GO:0009862 GO:0005576 GO:0005886 GO:0043069 GO:0009505 GO:0005524 GO:0042742","AT1G21250.1","cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides.","protein_coding","CELL WALL-ASSOCIATED KINASE (WAK1)","(PRO25)"]
["AT1G21460","Chr1:7511849-7513361","cs","ls","OK",19.2677,53.006,1.45997,-4.04093,{"v":5.32e-05,"d":"5.32E-05"},0.00318916,"yes","GO:0008150 GO:0005783 GO:0005887 GO:0051119","AT1G21460.1","Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G53190.1); Has 988 Blast hits to 930 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).","protein_coding","(SWEET1)","(SWEET1)"]
["AT1G21680","Chr1:7613004-7615339","cs","ls","OK",16.5158,34.9451,1.08124,-3.38729,0.000705878,0.0245401,"yes","GO:0019243 GO:0005576 GO:0003674 GO:0009505 GO:0005774","AT1G21680.1","DPP6 N-terminal domain-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi - 60; Plants - 122; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink).","protein_coding"]
["AT1G22630","Chr1:8003314-8004304","cs","ls","OK",152.896,75.2072,-1.02361,3.15035,0.00163072,0.0455169,"yes","GO:0000023 GO:0006098 GO:0009507 GO:0019252","AT1G22630.1","unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","protein_coding"]
["AT1G23020","Chr1:8150069-8153530","cs","ls","OK",4.49933,0.814275,-2.46612,3.76788,0.000164642,0.00802124,"yes","GO:0000293 GO:0050660 GO:0016021 GO:0006833 GO:0006826 GO:0010106 GO:0005506 GO:0055114 GO:0009055","AT1G23020.2","Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.","protein_coding","FERRIC REDUCTION OXIDASE 3 (FRO3)","FERRIC REDUCTION OXIDASE 3 (FRO3)"]
["AT1G23130","Chr1:8200382-8201235","cs","ls","OK",396.11,200.942,-0.979125,3.28681,0.00101328,0.0319687,"yes","GO:0006952 GO:0003674 GO:0009507","AT1G23130.1","Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 31 (TAIR:AT1G70840.1); Has 372 Blast hits to 341 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G23710","Chr1:8385250-8386426","cs","ls","OK",19.5921,7.41298,-1.40215,3.23902,0.00119943,0.0360209,"yes","GO:0010200 GO:0005634 GO:0010286 GO:0009611 GO:0009612 GO:0002679 GO:0003674 GO:0009873","AT1G23710.1","Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G70420.1); Has 288 Blast hits to 282 proteins in 52 species: Archae - 0; Bacteria - 6; Metazoa - 16; Fungi - 11; Plants - 191; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).","protein_coding"]
["AT1G23935","Chr1:8461908-8465943","cs","ls","OK",3.07429,9.93209,1.69184,-3.72902,0.000192226,0.00906663,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G23935.1","CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 219 Blast hits to 219 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).","protein_coding"]
["AT1G23940","Chr1:8466093-8469346","cs","ls","OK",1.56939,8.16511,2.37927,-3.75173,0.000175616,0.00844106,"yes","GO:0006886 GO:0030117 GO:0016192","AT1G23940.1","ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: gamma-adaptin 1 (TAIR:AT1G23900.2); Has 2143 Blast hits to 1692 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 982; Fungi - 444; Plants - 311; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).","protein_coding"]
["AT1G24147","Chr1:8542445-8543474","cs","ls","OK",13.6775,2.8903,-2.24251,3.22549,0.00125756,0.0374833,"yes","GO:0003674 GO:0005576 GO:0008150","AT1G24147.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24148.1); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G24388","Chr1:8648098-8648995","cs","ls","OK",0,34.2616,"1.79769e+308","1.79769e+308",{"v":3.35e-05,"d":"3.35E-05"},0.00212207,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G24388.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G25400","Chr1:8911129-8912642","cs","ls","OK",18.6198,5.98812,-1.63666,3.41857,0.00062952,0.0223553,"yes","GO:0010200 GO:0009862 GO:0005634 GO:0006612 GO:0009867 GO:0009625 GO:0031348 GO:0003674 GO:0010363","AT1G25400.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G25560","Chr1:8981676-8983041","cs","ls","OK",61.8494,25.8071,-1.26099,3.84459,0.000120754,0.00621005,"yes","GO:0048573 GO:0070838 GO:0003700 GO:0005634 GO:0006355 GO:0030003 GO:0009873","AT1G25560.1","Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn, binds to promoter elements in ethylene responsive genes.","protein_coding","TEMPRANILLO 1 (TEM1)","TEMPRANILLO 1 (TEM1)"]
["AT1G27180","Chr1:9439858-9446106","cs","ls","OK",1.75201,0.0827939,-4.40335,5.04514,{"v":4.53e-07,"d":"4.53E-07"},{"v":5.88e-05,"d":"5.88E-05"},"yes","GO:0005737 GO:0006952 GO:0007165 GO:0043531","AT1G27180.1","disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptors;ATP binding (TAIR:AT1G27170.1); Has 83534 Blast hits to 33450 proteins in 1183 species: Archae - 68; Bacteria - 4700; Metazoa - 16188; Fungi - 1127; Plants - 56869; Viruses - 12; Other Eukaryotes - 4570 (source: NCBI BLink).","protein_coding"]
["AT1G27460","Chr1:9534531-9537561","cs","ls","OK",24.859,10.2859,-1.2731,3.67269,0.000240008,0.0106112,"yes","GO:0005634 GO:0008150 GO:0005516 GO:0005886","AT1G27460.1","encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.","protein_coding","NO POLLEN GERMINATION RELATED 1 (NPGR1)","NO POLLEN GERMINATION RELATED 1 (NPGR1)"]
["AT1G27540","Chr1:9566331-9567906","cs","ls","OK",11.9505,159.442,3.73788,-9.89962,0,0,"yes","GO:0008150 GO:0005634 GO:0003674 GO:0005739","AT1G27540.1","Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 275 Blast hits to 268 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G27570","Chr1:9575537-9582376","cs","ls","OK",0,3.89198,"1.79769e+308","1.79769e+308",{"v":1.31e-05,"d":"1.31E-05"},0.00100353,"yes","GO:0005737 GO:0016773 GO:0005634","AT1G27570.1","phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1); Has 394 Blast hits to 394 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 2; Plants - 290; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).","protein_coding"]
["AT1G27580","Chr1:9589932-9591075","cs","ls","OK",10.8294,148.311,3.77561,-9.89756,0,0,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G27580.1","Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27540.1); Has 231 Blast hits to 231 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G28610","Chr1:10053616-10055731","cs","ls","OK",18.111,75.1207,2.05235,-6.21356,{"v":5.18e-10,"d":"5.18E-10"},{"v":1.61e-07,"d":"1.61E-07"},"yes","GO:0004091 GO:0005576 GO:0016298 GO:0006629","AT1G28610.2","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G27360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G28670","Chr1:10074506-10076344","cs","ls","OK",19.1631,4.36641,-2.13381,4.50597,{"v":6.61e-06,"d":"6.61E-06"},0.000582926,"yes","GO:0004091 GO:0006114 GO:0005576 GO:0006629","AT1G28670.1","Arabidopsis thaliana lipase","protein_coding","(ARAB-1)","(ARAB-1)"]
["AT1G29720","Chr1:10393796-10399873","cs","ls","OK",6.58472,0.36805,-4.16115,6.096,{"v":1.09e-09,"d":"1.09E-09"},{"v":3.17e-07,"d":"3.17E-07"},"yes","GO:0004674 GO:0006468 GO:0004713 GO:0005524 GO:0005886","AT1G29720.1","Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G29740.1); Has 108967 Blast hits to 107923 proteins in 3166 species: Archae - 87; Bacteria - 12310; Metazoa - 39616; Fungi - 9390; Plants - 31491; Viruses - 414; Other Eukaryotes - 15659 (source: NCBI BLink).","protein_coding",null,"CELLULOSE SYNTHASE LIKE D2 (CLSD2)"]
["AT1G30190","Chr1:10618965-10619802","cs","ls","OK",3.24155,0.14722,-4.46064,3.57446,0.000350946,0.0141311,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G30190.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34610.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).","protein_coding"]
["AT1G30510","Chr1:10806984-10809188","cs","ls","OK",17.9184,4.96785,-1.85075,3.79588,0.000147121,0.0072469,"yes","GO:0050661 GO:0050660 GO:0004324 GO:0005507 GO:0042651 GO:0055114 GO:0009507","AT1G30510.2","Encodes a root-type ferredoxin:NADP(H) oxidoreductase.","protein_coding","ROOT FNR 2 (RFNR2)","ROOT FNR 2 (RFNR2)"]
["AT1G31440","Chr1:11255835-11258715","cs","ls","OK",18.4156,3.9361,-2.22609,4.99545,{"v":5.87e-07,"d":"5.87E-07"},{"v":7.19e-05,"d":"7.19E-05"},"yes","GO:0005634 GO:0030276 GO:0012505 GO:0005886","AT1G31440.1","SH3 domain-containing protein; FUNCTIONS IN: clathrin binding; LOCATED IN: endomembrane system, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein (TAIR:AT4G34660.1); Has 3264 Blast hits to 2883 proteins in 317 species: Archae - 14; Bacteria - 271; Metazoa - 1747; Fungi - 174; Plants - 243; Viruses - 12; Other Eukaryotes - 803 (source: NCBI BLink).","protein_coding"]
["AT1G31540","Chr1:11288451-11293753","cs","ls","OK",10.105,2.33734,-2.11213,4.15503,{"v":3.25e-05,"d":"3.25E-05"},0.00207601,"yes","GO:0005737 GO:0017111 GO:0006952 GO:0007165 GO:0043531 GO:0009506","AT1G31540.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G31580","Chr1:11311168-11311989","cs","ls","OK",370.322,1.9669,-7.55671,11.1559,0,0,"yes","GO:0005618 GO:0019684 GO:0005739 GO:0009697 GO:0003674 GO:0042742 GO:0009409 GO:0009814","AT1G31580.1","Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750.","protein_coding","(ECS1)","(ECS1)"]
["AT1G31600","Chr1:11312960-11316473","cs","ls","OK",9.68079,0.777579,-3.63806,4.36005,{"v":1.3e-05,"d":"1.30E-05"},0.000996654,"yes","GO:0005634 GO:0003676 GO:0002098","AT1G31600.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G02485.1); Has 662 Blast hits to 662 proteins in 169 species: Archae - 0; Bacteria - 66; Metazoa - 255; Fungi - 80; Plants - 148; Viruses - 3; Other Eukaryotes - 110 (source: NCBI BLink).","protein_coding","TRNA METHYLTRANSFERASE 9 (TRM9)","ARABIDOPSIS THALIANA TRNA METHYLTRANSFERASE 9 (AtTRM9)"]
["AT1G31690","Chr1:11343979-11347767","cs","ls","OK",18.4311,38.8304,1.07504,-3.33629,0.000849057,0.0282322,"yes","GO:0005507 GO:0009308 GO:0008131 GO:0048038 GO:0055114 GO:0009507","AT1G31690.1","Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G31835","Chr1:11423058-11423684","cs","ls","OK",17.1453,2.11132,-3.0216,3.98154,{"v":6.85e-05,"d":"6.85E-05"},0.00396277,"yes","GO:0003674 GO:0008150","AT1G31835.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G31910","Chr1:11457125-11461825","cs","ls","OK",58.5438,27.2442,-1.10357,3.57339,0.000352391,0.0141605,"yes","GO:0005737 GO:0016126 GO:0019745 GO:0005524","AT1G31910.1","GHMP kinase family protein; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphomevalonate kinase, eukaryotic (InterPro:IPR005916), Phosphomevalonate kinase, ERG8 (InterPro:IPR016005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 314 Blast hits to 303 proteins in 161 species: Archae - 24; Bacteria - 53; Metazoa - 0; Fungi - 150; Plants - 51; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).","protein_coding"]
["AT1G32400","Chr1:11689105-11691531","cs","ls","OK",69.8355,30.7323,-1.1842,3.73029,0.000191261,0.0090614,"yes","GO:0005794 GO:0005773 GO:0016021 GO:0046786 GO:0005576 GO:0005515 GO:0009506","AT1G32400.1","TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.","protein_coding","TOBAMOVIRUS MULTIPLICATION 2A (TOM2A)","TOBAMOVIRUS MULTIPLICATION 2A (TOM2A)"]
["AT1G32450","Chr1:11715149-11719970","cs","ls","OK",11.3908,4.16448,-1.45166,3.40233,0.00066814,0.0234558,"yes","GO:0006857 GO:0006598 GO:0010167 GO:0015706 GO:0009734 GO:0042398 GO:0006826 GO:0005886 GO:0010106 GO:0015112 GO:0009698","AT1G32450.1","Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.","protein_coding","NITRATE TRANSPORTER 1.5 (NRT1.5)","NITRATE TRANSPORTER 1.5 (NRT1.5)"]
["AT1G33600","Chr1:12180775-12182363","cs","ls","OK",49.79,16.1555,-1.62383,4.96044,{"v":7.03e-07,"d":"7.03E-07"},{"v":8.31e-05,"d":"8.31E-05"},"yes","GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0009505 GO:0031348 GO:0009867 GO:0005886 GO:0035304","AT1G33600.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33590.1); Has 71591 Blast hits to 27926 proteins in 991 species: Archae - 22; Bacteria - 6296; Metazoa - 16731; Fungi - 641; Plants - 43101; Viruses - 4; Other Eukaryotes - 4796 (source: NCBI BLink).","protein_coding"]
["AT1G33610","Chr1:12188909-12190418","cs","ls","OK",4.03364,0.745732,-2.43535,3.22356,0.0012661,0.037681,"yes","GO:0007165 GO:0005886","AT1G33610.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, phloem, root, petiole, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G33930","Chr1:12323887-12327084","cs","ls","OK",4.51491,17.564,1.95986,-3.53388,0.000409499,0.0158769,"yes","GO:0009617 GO:0005739 GO:0005525","AT1G33930.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; EXPRESSED IN: leaf lamina base, pedicel, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G33900.1); Has 1162 Blast hits to 1017 proteins in 94 species: Archae - 3; Bacteria - 57; Metazoa - 775; Fungi - 10; Plants - 211; Viruses - 2; Other Eukaryotes - 104 (source: NCBI BLink).","protein_coding"]
["AT1G34200","Chr1:12455707-12457412","cs","ls","OK",8.31897,1.65896,-2.32612,3.89496,{"v":9.82e-05,"d":"9.82E-05"},0.00526934,"yes","GO:0016491 GO:0005576 GO:0055114 GO:0000166","AT1G34200.1","Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: Oxidoreductase family protein (TAIR:AT4G09670.1); Has 11880 Blast hits to 11879 proteins in 1945 species: Archae - 244; Bacteria - 8550; Metazoa - 214; Fungi - 474; Plants - 94; Viruses - 0; Other Eukaryotes - 2304 (source: NCBI BLink).","protein_coding"]
["AT1G35320","Chr1:12959056-12962853","cs","ls","OK",2.10953,0,"-1.79769e+308","-1.79769e+308",0.00141917,0.0408883,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G35320.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30160.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G35580","Chr1:13122203-13125264","cs","ls","OK",62.2621,32.0603,-0.957567,3.12372,0.00178578,0.0484946,"yes","GO:0042542 GO:0009805 GO:0004575 GO:0005829 GO:0006520 GO:0009611 GO:0005739 GO:0005987 GO:0048364 GO:0006970 GO:0004564 GO:0005515 GO:0005886 GO:0046686 GO:0005634","AT1G35580.1","CINV1 / A/N-InvG is an alkaline/neutral invertase that breaks sucrose down into fructose and glucose (GH100). The exact localization of CINV1 remains under investigation but there is evidence that fluorescently-tagged CINV1 localizes to the cytoplasm. atinvg mutants have reduced root growth, reduced invertase activity, and increased expression of antioxidant genes under basal conditions. The levels of CINV1 / A/N-InvG transcripts rise in response to a hydrogen peroxide treatment. The protein has been shown to interact with PIP5K9.","protein_coding","CYTOSOLIC INVERTASE 1 (CINV1)","ALKALINE/NEUTRAL INVERTASE G (A/N-InvG)"]
["AT1G35710","Chr1:13220939-13224681","cs","ls","OK",4.17847,0.273011,-3.93595,5.61573,{"v":1.96e-08,"d":"1.96E-08"},{"v":3.74e-06,"d":"3.74E-06"},"yes","GO:0006468 GO:0009814 GO:0000165 GO:0004674 GO:0004713 GO:0005886 GO:0007169 GO:0005524","AT1G35710.1","Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G08850.1); Has 304074 Blast hits to 147448 proteins in 4766 species: Archae - 178; Bacteria - 29187; Metazoa - 106993; Fungi - 12531; Plants - 120860; Viruses - 430; Other Eukaryotes - 33895 (source: NCBI BLink).","protein_coding"]
["AT1G36370","Chr1:13696041-13698639","cs","ls","OK",25.1641,10.8381,-1.21526,3.48758,0.000487421,0.0181876,"yes","GO:0005737 GO:0004372 GO:0006563 GO:0006544 GO:0030170 GO:0046686","AT1G36370.1","Encodes a putative serine hydroxymethyltransferase.","protein_coding","SERINE HYDROXYMETHYLTRANSFERASE 7 (SHM7)","SERINE HYDROXYMETHYLTRANSFERASE 7 (SHM7)"]
["AT1G45165","Chr1:17090676-17091464","cs","ls","OK",10.1014,0,"-1.79769e+308","-1.79769e+308",0.000199063,0.00923273,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G45165.1","Expressed protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G47250","Chr1:17319176-17321074","cs","ls","OK",23.6242,7.95271,-1.57075,3.44819,0.000564349,0.0204588,"yes","GO:0019773 GO:0005829 GO:0006511 GO:0009506 GO:0004298","AT1G47250.1","Encodes 20S proteasome subunit PAF2 (PAF2).","protein_coding","20S PROTEASOME ALPHA SUBUNIT F2 (PAF2)","20S PROTEASOME ALPHA SUBUNIT F2 (PAF2)"]
["AT1G47395","Chr1:17383033-17383408","cs","ls","OK",46.4864,8.09722,-2.52131,3.62419,0.000289871,0.012217,"yes","GO:0003674 GO:0008150","AT1G47395.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47400.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G48700","Chr1:18010728-18012871","cs","ls","OK",0,3.70538,"1.79769e+308","1.79769e+308",0.00121387,0.0363446,"yes","GO:0005575 GO:0031418 GO:0005506 GO:0016705 GO:0055114","AT1G48700.1","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G43660.1); Has 364 Blast hits to 363 proteins in 61 species: Archae - 0; Bacteria - 16; Metazoa - 230; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).","protein_coding"]
["AT1G49032","Chr1:18138267-18139005","cs","ls","OK",47.2352,0.0724643,-9.34838,6.66702,{"v":2.61e-11,"d":"2.61E-11"},{"v":1.4e-08,"d":"1.40E-08"},"yes","GO:0008150 GO:0003674 GO:0005739","AT1G49032.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G50290","Chr1:18627558-18628434","cs","ls","OK",5.81874,66.1085,3.50606,-7.63316,{"v":2.29e-14,"d":"2.29E-14"},{"v":2.06e-11,"d":"2.06E-11"},"yes","GO:0005829 GO:0003674 GO:0006979 GO:0005739","AT1G50290.1","unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G50970","Chr1:18896322-18900268","cs","ls","OK",3.89719,0.799906,-2.28453,3.12853,0.00175681,0.0478386,"yes","GO:0005794 GO:0006810 GO:0005215","AT1G50970.1","Membrane trafficking VPS53 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50500.1); Has 637 Blast hits to 448 proteins in 205 species: Archae - 2; Bacteria - 36; Metazoa - 221; Fungi - 169; Plants - 87; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).","protein_coding"]
["AT1G51430","Chr1:19068240-19069776","cs","ls","OK",7.01306,0,"-1.79769e+308","-1.79769e+308",0.000298665,0.0124034,"yes","GO:0008150 GO:0003674 GO:0009507","AT1G51430.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G51440","Chr1:19070912-19072694","cs","ls","OK",3.07978,0.314892,-3.2899,3.73045,0.000191142,0.0090614,"yes","GO:0008970 GO:0047714 GO:0004806 GO:0006629 GO:0009507","AT1G51440.1","Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.","protein_coding"]
["AT1G52040","Chr1:19350374-19352782","cs","ls","OK",4.61387,17.1196,1.8916,-4.41401,{"v":1.01e-05,"d":"1.01E-05"},0.000802515,"yes","GO:0006952 GO:0005773 GO:0005634 GO:0005576","AT1G52040.1","Encodes myrosinase-binding protein expressed in flowers.","protein_coding","MYROSINASE-BINDING PROTEIN 1 (MBP1)","MYROSINASE-BINDING PROTEIN 1 (MBP1)"]
["AT1G52100","Chr1:19383121-19385602","cs","ls","OK",7.93559,0,"-1.79769e+308","-1.79769e+308",{"v":7.18e-07,"d":"7.18E-07"},{"v":8.44e-05,"d":"8.44E-05"},"yes","GO:0003674 GO:0016020 GO:0008150","AT1G52100.1","Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: shoot, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G35940.1); Has 1742 Blast hits to 773 proteins in 43 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 4; Plants - 1729; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding"]
["AT1G52347","Chr1:19496505-19497703","cs","ls","OK",9.15632,0,"-1.79769e+308","-1.79769e+308",0.000586961,0.0211083,"yes","GO:0005575 GO:0003674 GO:0008150","AT1G52347.1","Unknown gene","other_rna"]
["AT1G52410","Chr1:19520727-19525624","cs","ls","OK",44.3485,19.6973,-1.17089,3.78025,0.000156672,0.00767923,"yes","GO:0009535 GO:0005773 GO:0005634 GO:0005777 GO:0050832 GO:0005509 GO:0005515 GO:0009640","AT1G52410.2","Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.","protein_coding","TSK-ASSOCIATING PROTEIN 1 (TSA1)","TSK-ASSOCIATING PROTEIN 1 (TSA1)"]
["AT1G52570","Chr1:19583939-19587050","cs","ls","OK",0.828725,3.78457,2.19117,-3.41784,0.00063121,0.0223753,"yes","GO:0009941 GO:0016020 GO:0005509 GO:0046470 GO:0004630","AT1G52570.1","member of C2-PLD subfamily","protein_coding","PHOSPHOLIPASE D ALPHA 2 (PLDALPHA2)","PHOSPHOLIPASE D ALPHA 2 (PLDALPHA2)"]
["AT1G52590","Chr1:19587636-19590273","cs","ls","OK",26.2952,67.256,1.35487,-3.72274,0.000197071,0.00920483,"yes","GO:0008150 GO:0010287 GO:0003674","AT1G52590.1","Putative thiol-disulphide oxidoreductase DCC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); BEST Arabidopsis thaliana protein match is: Putative thiol-disulphide oxidoreductase DCC (TAIR:AT1G24095.1); Has 955 Blast hits to 955 proteins in 365 species: Archae - 5; Bacteria - 640; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).","protein_coding"]
["AT1G52690","Chr1:19619744-19623461","cs","ls","OK",0.939557,10.0141,3.41391,-3.6659,0.000246468,0.0108484,"yes","GO:0009830 GO:0005575 GO:0009793 GO:0003674","AT1G52690.1","Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT3G15670.1); Has 2929 Blast hits to 1441 proteins in 420 species: Archae - 10; Bacteria - 766; Metazoa - 298; Fungi - 136; Plants - 1347; Viruses - 16; Other Eukaryotes - 356 (source: NCBI BLink).","protein_coding","LATE EMBRYOGENESIS ABUNDANT 7 (LEA7)","LATE EMBRYOGENESIS ABUNDANT 7 (LEA7)"]
["AT1G52760","Chr1:19651324-19652743","cs","ls","OK",32.81,7.40021,-2.1485,5.10829,{"v":3.25e-07,"d":"3.25E-07"},{"v":4.39e-05,"d":"4.39E-05"},"yes","GO:0046686 GO:0042542 GO:0010043 GO:0003846 GO:0004622 GO:0009506 GO:0009507","AT1G52760.1","Encodes a lysophospholipase 2 (LysoPL2). Involved in tolerance to cadmium-induced oxidative stress. Binds Acyl-CoA-binding protein 2 (ACBP2).","protein_coding","LYSOPHOSPHOLIPASE 2 (LysoPL2)","LYSOPHOSPHOLIPASE 2 (LysoPL2)"]
["AT1G52890","Chr1:19697003-19698482","cs","ls","OK",0.456372,4.12404,3.17578,-3.67716,0.000235846,0.0104973,"yes","GO:0009733 GO:0010286 GO:0042538 GO:0010363 GO:0009863 GO:0005634 GO:0006612 GO:0009867 GO:0009611 GO:0009723 GO:0003700 GO:0006355 GO:0005515 GO:0009414 GO:0009409 GO:0009738 GO:0007275","AT1G52890.1","encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.","protein_coding","NAC DOMAIN CONTAINING PROTEIN 19 (NAC019)","NAC DOMAIN CONTAINING PROTEIN 19 (NAC019)"]
["AT1G52905","Chr1:19706084-19706706","cs","ls","OK",13.0576,0,"-1.79769e+308","-1.79769e+308",0.00149646,0.0427428,"yes","GO:0008150 GO:0003674 GO:0009507","AT1G52905.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27565.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G52980","Chr1:19737431-19740348","cs","ls","OK",56.8557,17.2659,-1.71938,5.23785,{"v":1.62e-07,"d":"1.62E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0005634 GO:0003924 GO:0042254 GO:0005525","AT1G52980.1","Encodes a GTPase that belongs to the subfamily of YlqF/YawG GTPases. Functions in Pre-60S ribosomal subunit maturation.","protein_coding","NUCLEAR/NUCLEOLAR GTPASE 2 (AtNug2)","NUCLEAR/NUCLEOLAR GTPASE 2 (Nug2)"]
["AT1G52990","Chr1:19740502-19743449","cs","ls","OK",0.820517,5.5555,2.75931,-3.31687,0.000910325,0.0295759,"yes","GO:0006662 GO:0015035 GO:0045454 GO:0003676 GO:0009055","AT1G52990.1","thioredoxin family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G65005.1); Has 15228 Blast hits to 15210 proteins in 2870 species: Archae - 230; Bacteria - 9375; Metazoa - 871; Fungi - 596; Plants - 1211; Viruses - 5; Other Eukaryotes - 2940 (source: NCBI BLink).","protein_coding"]
["AT1G53470","Chr1:19958586-19961578","cs","ls","OK",0.791352,4.31693,2.44762,-3.9529,{"v":7.72e-05,"d":"7.72E-05"},0.0043666,"yes","GO:0005634 GO:0055085 GO:0005886","AT1G53470.1","mechanosensitive channel of small conductance-like 4 (MSL4); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 5 (TAIR:AT3G14810.1); Has 3267 Blast hits to 3247 proteins in 1053 species: Archae - 163; Bacteria - 2328; Metazoa - 1; Fungi - 210; Plants - 229; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).","protein_coding","MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4 (MSL4)","MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4 (MSL4)"]
["AT1G53490","Chr1:19963046-19969757","cs","ls","OK",18.1392,1.11869,-4.01922,3.58253,0.000340284,0.0138422,"yes","GO:0005694 GO:0005634 GO:0051026 GO:0003677","AT1G53490.1","RING/U-box superfamily protein; Has 175 Blast hits to 173 proteins in 83 species: Archae - 2; Bacteria - 14; Metazoa - 69; Fungi - 24; Plants - 38; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).","protein_coding","HOMOLOG OF HUMAN HEI10 ( ENHANCER OF CELL INVASION NO.10) (HEI10)","HOMOLOG OF HUMAN HEI10 ( ENHANCER OF CELL INVASION NO.10) (HEI10)"]
["AT1G53830","Chr1:20098521-20100889","cs","ls","OK",0.0241452,1.37313,5.82959,-3.62143,0.000292977,0.012244,"yes","GO:0042545 GO:0004857 GO:0005576 GO:0009505 GO:0030599","AT1G53830.1","encodes a pectin methylesterase","protein_coding","PECTIN METHYLESTERASE 2 (PME2)","PECTIN METHYLESTERASE 2 (PME2)"]
["AT1G54040","Chr1:20170714-20173949","cs","ls","OK",16.8463,1594.16,6.56422,-17.7212,0,0,"yes","GO:0005737 GO:0010150 GO:0009753 GO:0005634 GO:0019762 GO:0042742 GO:0005515 GO:0030234","AT1G54040.2","Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.","protein_coding","EPITHIOSPECIFIER PROTEIN (ESP)","(TASTY)"]
["AT1G55450","Chr1:20704917-20706893","cs","ls","OK",90.7089,5.49025,-4.0463,9.3425,0,0,"yes","GO:0005737 GO:0008168 GO:0008152 GO:0009651","AT1G55450.2","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G54150.1).","protein_coding"]
["AT1G56510","Chr1:21167588-21173632","cs","ls","OK",5.47236,0.442846,-3.62729,5.69769,{"v":1.21e-08,"d":"1.21E-08"},{"v":2.54e-06,"d":"2.54E-06"},"yes","GO:0009817 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT1G56510.1","TIR-NB-LRR protein that confers resistance to four races of Albugo candida.","protein_coding","WHITE RUST RESISTANCE 4 (WRR4)","ACTIVATED DISEASE RESISTANCE 2 (ADR2)"]
["AT1G56520","Chr1:21174663-21178974","cs","ls","OK",4.60617,0.182689,-4.65611,5.41444,{"v":6.15e-08,"d":"6.15E-08"},{"v":1.04e-05,"d":"1.04E-05"},"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT1G56520.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G56510.1).","protein_coding"]
["AT1G57590","Chr1:21327359-21329763","cs","ls","OK",0.751965,4.61242,2.61679,-3.48137,0.000498859,0.0185446,"yes","GO:0004091 GO:0005576 GO:0008150","AT1G57590.1","Pectinacetylesterase family protein; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G26670.1); Has 541 Blast hits to 533 proteins in 91 species: Archae - 0; Bacteria - 38; Metazoa - 118; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).","protein_coding"]
["AT1G57660","Chr1:21355519-21356537","cs","ls","OK",405.699,888.078,1.13027,-3.8453,0.000120403,0.00621005,"yes","GO:0003735 GO:0005840 GO:0006412","AT1G57660.1","Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57860.1); Has 1438 Blast hits to 1438 proteins in 382 species: Archae - 215; Bacteria - 0; Metazoa - 706; Fungi - 180; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).","protein_coding"]
["AT1G57860","Chr1:21429897-21430865","cs","ls","OK",289.938,677.119,1.22366,-4.14233,{"v":3.44e-05,"d":"3.44E-05"},0.00217343,"yes","GO:0003735 GO:0006412 GO:0022625","AT1G57860.1","Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57660.1); Has 1436 Blast hits to 1436 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 706; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).","protein_coding"]
["AT1G57990","Chr1:21441504-21442920","cs","ls","OK",45.3643,15.4114,-1.55756,4.51857,{"v":6.23e-06,"d":"6.23E-06"},0.000554204,"yes","GO:0005345 GO:0006863 GO:0009507 GO:0005886","AT1G57990.1","Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.","protein_coding","PURINE PERMEASE 18 (PUP18)","PURINE PERMEASE 18 (PUP18)"]
["AT1G58270","Chr1:21612115-21614117","cs","ls","OK",17.7404,0,"-1.79769e+308","-1.79769e+308",{"v":2.25e-09,"d":"2.25E-09"},{"v":5.95e-07,"d":"5.95E-07"},"yes","GO:0005737 GO:0003674 GO:0008150 GO:0009506","AT1G58270.1","ZW9 mRNA, complete cds","protein_coding","(ZW9)","(ZW9)"]
["AT1G58280","Chr1:21620330-21622611","cs","ls","OK",13.9925,2.53995,-2.46178,3.53549,0.000407022,0.0158209,"yes","GO:0005576 GO:0009507","AT1G58280.2","Phosphoglycerate mutase family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT5G64460.8); Has 412 Blast hits to 412 proteins in 84 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 152; Plants - 162; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).","protein_coding"]
["AT1G58290","Chr1:21623725-21626200","cs","ls","OK",615.698,304.831,-1.01421,3.30106,0.000963191,0.03074,"yes","GO:0050661 GO:0015995 GO:0006783 GO:0008883 GO:0000302 GO:0055072 GO:0009416 GO:0005515 GO:0010039 GO:0055114 GO:0009507","AT1G58290.1","Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis.","protein_coding","(HEMA1)","ARABIDOPSIS THALIANA HEMA 1 (AtHEMA1)"]
["AT1G58684","Chr1:21769761-21771229","cs","ls","OK",128.53,31.9082,-2.01011,6.23039,{"v":4.65e-10,"d":"4.65E-10"},{"v":1.48e-07,"d":"1.48E-07"},"yes","GO:0022627 GO:0005618 GO:0005634 GO:0003735 GO:0003723 GO:0006412 GO:0009506","AT1G58684.1","Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink).","protein_coding"]
["AT1G58807","Chr1:21780184-21784314","cs","ls","OK",28.053,9.46598,-1.56733,4.80559,{"v":1.54e-06,"d":"1.54E-06"},0.000162923,"yes","GO:0006952 GO:0005575 GO:0043531","AT1G58807.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G59218.2); Has 16558 Blast hits to 15019 proteins in 550 species: Archae - 4; Bacteria - 833; Metazoa - 644; Fungi - 107; Plants - 14810; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).","protein_coding"]
["AT1G58848","Chr1:21791782-21797050","cs","ls","OK",22.428,9.53422,-1.23411,3.76055,0.000169537,0.00818853,"yes","GO:0006952 GO:0043531","AT1G58848.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G59218.2); Has 17671 Blast hits to 15071 proteins in 568 species: Archae - 4; Bacteria - 896; Metazoa - 587; Fungi - 110; Plants - 15906; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).","protein_coding"]
["AT1G58983","Chr1:21806019-21807487","cs","ls","OK",128.53,31.9082,-2.01011,6.23039,{"v":4.65e-10,"d":"4.65E-10"},{"v":1.48e-07,"d":"1.48E-07"},"yes","GO:0022627 GO:0005618 GO:0005634 GO:0003735 GO:0003723 GO:0006412 GO:0009506","AT1G58983.1","Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink).","protein_coding"]
["AT1G59124","Chr1:21816442-21820572","cs","ls","OK",28.1543,9.46598,-1.57253,4.88193,{"v":1.05e-06,"d":"1.05E-06"},0.000116505,"yes","GO:0006952 GO:0005575 GO:0043531","AT1G59124.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58807.2); Has 15438 Blast hits to 14768 proteins in 545 species: Archae - 4; Bacteria - 810; Metazoa - 616; Fungi - 105; Plants - 13760; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).","protein_coding"]
["AT1G59218","Chr1:21828032-21832708","cs","ls","OK",20.8187,10.138,-1.03811,3.14975,0.0016341,0.0455169,"yes","GO:0006952 GO:0043531","AT1G59218.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58848.2); Has 17671 Blast hits to 15071 proteins in 568 species: Archae - 4; Bacteria - 896; Metazoa - 587; Fungi - 110; Plants - 15906; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).","protein_coding"]
["AT1G59359","Chr1:21842303-21843745","cs","ls","OK",133.996,32.9734,-2.02282,6.26978,{"v":3.62e-10,"d":"3.62E-10"},{"v":1.2e-07,"d":"1.20E-07"},"yes","GO:0022627 GO:0005618 GO:0005634 GO:0003735 GO:0003723 GO:0006412 GO:0009506","AT1G59359.1","Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cell wall, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G58983.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink).","protein_coding"]
["AT1G59640","Chr1:21909174-21911201","cs","ls","OK",2.64695,0.184473,-3.84285,3.42723,0.00060978,0.0218104,"yes","GO:0009827 GO:0048443 GO:0048446 GO:0010162 GO:0009753 GO:0006355 GO:0003700 GO:0005634 GO:0009860 GO:0009694 GO:0009062 GO:0048481","AT1G59640.2","A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.","protein_coding","BIG PETAL P (BPEP)","(ZCW32)"]
["AT1G59700","Chr1:21936295-21937959","cs","ls","OK",8.37103,1.21068,-2.78959,3.84278,0.000121651,0.00622395,"yes","GO:0005737 GO:0010583 GO:0004364 GO:0009407","AT1G59700.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 16 (GSTU16)","GLUTATHIONE S-TRANSFERASE TAU 16 (GSTU16)"]
["AT1G60590","Chr1:22314169-22316970","cs","ls","OK",6.76781,19.0191,1.49069,-3.95521,{"v":7.65e-05,"d":"7.65E-05"},0.00433824,"yes","GO:0016556 GO:0005576 GO:0005975 GO:0004650","AT1G60590.1","Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).","protein_coding"]
["AT1G60710","Chr1:22354752-22356761","cs","ls","OK",51.505,24.5448,-1.06929,3.20264,0.00136174,0.0395781,"yes","GO:0009805 GO:0005829 GO:0009611 GO:0009963 GO:0046686 GO:0009651 GO:0006094 GO:0006096 GO:0055114 GO:0016491","AT1G60710.1","Encodes ATB2.","protein_coding","(ATB2)","(ATB2)"]
["AT1G61190","Chr1:22557601-22560687","cs","ls","OK",33.0603,8.26018,-2.00085,5.99534,{"v":2.03e-09,"d":"2.03E-09"},{"v":5.6e-07,"d":"5.60E-07"},"yes","GO:0006952 GO:0005575 GO:0043531 GO:0006499","AT1G61190.1","Putative CC-NB-LRR resistance gene. It's ortholog in ecotype Wei-0 RPP39 (R_190-Wei-0, accession number JQ045573, PMID:22359513) has been shown experimentally to recognize the effector ATR39-1 produced by Hyaloperonospora arabidopsidis (Hpa).","protein_coding",null,"RESISTANCE TO PERONOSPORA PARASITICA 39 (RPP39)"]
["AT1G61300","Chr1:22607465-22610273","cs","ls","OK",14.8341,6.05084,-1.29371,3.52203,0.000428249,0.0164433,"yes","GO:0006952 GO:0005829 GO:0006499 GO:0043531","AT1G61300.1","LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G61310.1); Has 27714 Blast hits to 22073 proteins in 822 species: Archae - 18; Bacteria - 5358; Metazoa - 4578; Fungi - 354; Plants - 16806; Viruses - 2; Other Eukaryotes - 598 (source: NCBI BLink).","protein_coding"]
["AT1G61470","Chr1:22678184-22679021","cs","ls","OK",6.28797,0.479828,-3.71201,3.82594,0.000130274,0.00653049,"yes","GO:0005634 GO:0004540 GO:0003676 GO:0009451","AT1G61470.1","Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27820.1); Has 904 Blast hits to 904 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 148; Plants - 359; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).","protein_coding"]
["AT1G61640","Chr1:22746371-22749184","cs","ls","OK",3.82207,9.86703,1.36826,-3.19181,0.00141387,0.0407945,"yes","GO:0016772 GO:0005886","AT1G61640.1","Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11390.1); Has 9331 Blast hits to 9278 proteins in 1808 species: Archae - 122; Bacteria - 4378; Metazoa - 406; Fungi - 512; Plants - 679; Viruses - 16; Other Eukaryotes - 3218 (source: NCBI BLink).","protein_coding"]
["AT1G61800","Chr1:22824439-22826774","cs","ls","OK",1.35393,5.8405,2.10894,-3.24665,0.00116771,0.0353356,"yes","GO:0015297 GO:0015760 GO:0009749 GO:0015714 GO:0005774 GO:0016021 GO:0009624 GO:0005315 GO:0009744 GO:0015713 GO:0010109 GO:0015152 GO:0015120 GO:0009643 GO:0055085 GO:0009507","AT1G61800.1","glucose6-Phosphate/phosphate transporter 2. Expression is upregulated in the shoot of cax1/cax3 mutant.","protein_coding","GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2 (GPT2)","GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2 (GPT2)"]
["AT1G62480","Chr1:23128704-23129759","cs","ls","OK",186.994,50.014,-1.90259,5.56272,{"v":2.66e-08,"d":"2.66E-08"},{"v":4.93e-06,"d":"4.93E-06"},"yes","GO:0046686 GO:0009651 GO:0007030 GO:0006816 GO:0005575","AT1G62480.1","Vacuolar calcium-binding protein-related; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21787 Blast hits to 9668 proteins in 1087 species: Archae - 111; Bacteria - 3941; Metazoa - 6730; Fungi - 2179; Plants - 741; Viruses - 179; Other Eukaryotes - 7906 (source: NCBI BLink).","protein_coding"]
["AT1G62850","Chr1:23271415-23274302","cs","ls","OK",20.8556,5.99538,-1.79851,4.2624,{"v":2.02e-05,"d":"2.02E-05"},0.00144934,"yes","GO:0006415 GO:0003747 GO:0005739","AT1G62850.2","Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 2349 Blast hits to 2349 proteins in 1057 species: Archae - 0; Bacteria - 1715; Metazoa - 148; Fungi - 110; Plants - 54; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).","protein_coding"]
["AT1G63350","Chr1:23494934-23497631","cs","ls","OK",1.16874,0.136928,-3.09347,3.20057,0.00137155,0.039805,"yes","GO:0006952 GO:0005575 GO:0043531 GO:0006499","AT1G63350.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G62630.1); Has 18724 Blast hits to 16763 proteins in 698 species: Archae - 14; Bacteria - 926; Metazoa - 3029; Fungi - 209; Plants - 14107; Viruses - 4; Other Eukaryotes - 435 (source: NCBI BLink).","protein_coding"]
["AT1G63390","Chr1:23506506-23506983","cs","ls","OK",0.25891,17.0699,6.04286,-3.76662,0.000165473,0.00803129,"yes","GO:0005575 GO:0050661 GO:0050660 GO:0004499 GO:0055114","AT1G63390.1","FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adrenodoxin reductase (InterPro:IPR000759), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G62600.1); Has 6595 Blast hits to 6589 proteins in 1381 species: Archae - 54; Bacteria - 3312; Metazoa - 689; Fungi - 445; Plants - 357; Viruses - 0; Other Eukaryotes - 1738 (source: NCBI BLink).","protein_coding"]
["AT1G63540","Chr1:23566957-23569495","cs","ls","OK",0,1.7321,"1.79769e+308","1.79769e+308",0.000890139,0.0291586,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G63540.1","hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63530.1); Has 23394 Blast hits to 12215 proteins in 815 species: Archae - 17; Bacteria - 3216; Metazoa - 8302; Fungi - 5746; Plants - 1148; Viruses - 308; Other Eukaryotes - 4657 (source: NCBI BLink).","protein_coding"]
["AT1G63880","Chr1:23712275-23716124","cs","ls","OK",20.6804,0.0565372,-8.51485,8.49793,0,0,"yes","GO:0050832 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT1G63880.1","Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.","protein_coding"]
["AT1G64180","Chr1:23821515-23824359","cs","ls","OK",5.87932,1.3133,-2.16245,3.48761,0.000487358,0.0181876,"yes","GO:0005737 GO:0003674 GO:0008150 GO:0009506","AT1G64180.1","intracellular protein transport protein USO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41620.1); Has 2997 Blast hits to 2464 proteins in 355 species: Archae - 17; Bacteria - 245; Metazoa - 1676; Fungi - 267; Plants - 224; Viruses - 17; Other Eukaryotes - 551 (source: NCBI BLink).","protein_coding"]
["AT1G64490","Chr1:23952132-23952713","cs","ls","OK",54.9518,17.5137,-1.64968,3.72526,0.000195115,0.00915659,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G64490.1","DEK, chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK, chromatin associated protein (TAIR:AT5G42060.1); Has 63 Blast hits to 62 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT1G64940","Chr1:24123788-24125324","cs","ls","OK",0.233699,2.84749,3.60697,-3.57744,0.00034698,0.0139998,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT1G64940.1","member of CYP89A","protein_coding","\"CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 6\" (CYP89A6)","\"CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 6\" (CYP89A6)"]
["AT1G65190","Chr1:24215643-24217328","cs","ls","OK",28.0664,2.54793,-3.46145,6.86772,{"v":6.52e-12,"d":"6.52E-12"},{"v":4.32e-09,"d":"4.32E-09"},"yes","GO:0005575 GO:0006468 GO:0005524 GO:0004672","AT1G65190.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G65250.1); Has 21418 Blast hits to 21199 proteins in 731 species: Archae - 0; Bacteria - 680; Metazoa - 1172; Fungi - 120; Plants - 18955; Viruses - 11; Other Eukaryotes - 480 (source: NCBI BLink).","protein_coding"]
["AT1G65370","Chr1:24284468-24286145","cs","ls","OK",17.0926,0.126942,-7.07306,6.60519,{"v":3.97e-11,"d":"3.97E-11"},{"v":1.92e-08,"d":"1.92E-08"},"yes","GO:0008150 GO:0005634 GO:0003674","AT1G65370.1","TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G65150.2); Has 460 Blast hits to 456 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","protein_coding"]
["AT1G65800","Chr1:24473120-24476715","cs","ls","OK",11.7642,3.17867,-1.88791,4.53832,{"v":5.67e-06,"d":"5.67E-06"},0.00051873,"yes","GO:0031625 GO:0005829 GO:0034613 GO:0030246 GO:0004675 GO:0004713 GO:0005886 GO:0046777 GO:0005524 GO:0048544","AT1G65800.1","encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures.","protein_coding","RECEPTOR KINASE 2 (RK2)","RECEPTOR KINASE 2 (RK2)"]
["AT1G66090","Chr1:24602145-24604763","cs","ls","OK",9.38491,0.255435,-5.19931,5.8413,{"v":5.18e-09,"d":"5.18E-09"},{"v":1.27e-06,"d":"1.27E-06"},"yes","GO:0010363 GO:0009863 GO:0006612 GO:0009867 GO:0017111 GO:0050832 GO:0031348 GO:0009697 GO:0043531 GO:0009507 GO:0010200","AT1G66090.1","Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G56540.1); Has 7229 Blast hits to 7084 proteins in 242 species: Archae - 0; Bacteria - 86; Metazoa - 1; Fungi - 7; Plants - 7129; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","protein_coding"]
["AT1G66100","Chr1:24605670-24606537","cs","ls","OK",243.688,0,"-1.79769e+308","-1.79769e+308",{"v":3.85e-12,"d":"3.85E-12"},{"v":2.73e-09,"d":"2.73E-09"},"yes","GO:0006952 GO:0005576 GO:0050827","AT1G66100.1","Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.","protein_coding"]
["AT1G66540","Chr1:24824458-24826670","cs","ls","OK",2.7793,0.321283,-3.1128,3.26967,0.00107673,0.0331898,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT1G66540.1","Cytochrome P450 superfamily protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 3 (TAIR:AT4G37340.1); Has 36477 Blast hits to 36375 proteins in 1869 species: Archae - 65; Bacteria - 6588; Metazoa - 11586; Fungi - 7386; Plants - 9188; Viruses - 3; Other Eukaryotes - 1661 (source: NCBI BLink).","protein_coding"]
["AT1G66700","Chr1:24873290-24874758","cs","ls","OK",0.123041,1.85489,3.91411,-3.1428,0.00167339,0.0463298,"yes","GO:0008757 GO:0005634","AT1G66700.1","A member of the Arabidopsis SABATH methyltransferase gene family. Encodes PXMT1, a methyltransferase that methylates 1,7-paraxanthine.","protein_coding","(PXMT1)","(PXMT1)"]
["AT1G66980","Chr1:24997308-25001983","cs","ls","OK",22.2017,4.76275,-2.2208,6.48147,{"v":9.08e-11,"d":"9.08E-11"},{"v":3.92e-08,"d":"3.92E-08"},"yes","GO:0006468 GO:0006629 GO:0008889 GO:0016556 GO:0006952 GO:0004674 GO:0006071 GO:0004713 GO:0005886 GO:0000023 GO:0005524 GO:0019252","AT1G66980.1","Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.","protein_coding","SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 (SNC4)","GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE (GDPD) LIKE 2 (GDPDL2)"]
["AT1G67120","Chr1:25069561-25095526","cs","ls","OK",4.61322,9.20233,0.996223,-3.31871,0.000904328,0.0294292,"yes","GO:0009553 GO:0009941 GO:0007010 GO:0005634 GO:0010498 GO:0009506 GO:0016887 GO:0008134 GO:0005524 GO:0006094","AT1G67120.1","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G67860","Chr1:25444804-25445263","cs","ls","OK",86.3615,19.3576,-2.15749,4.4273,{"v":9.54e-06,"d":"9.54E-06"},0.000766874,"yes","GO:0005575 GO:0003674 GO:0008150","AT1G67860.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67865.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G67865","Chr1:25446288-25446737","cs","ls","OK",67.8052,13.4428,-2.33457,4.19342,{"v":2.75e-05,"d":"2.75E-05"},0.00181216,"yes","GO:0005575 GO:0050832 GO:0003674","AT1G67865.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67860.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G68050","Chr1:25508675-25510889","cs","ls","OK",10.6257,51.3185,2.27193,-6.63042,{"v":3.35e-11,"d":"3.35E-11"},{"v":1.71e-08,"d":"1.71E-08"},"yes","GO:0007623 GO:0005634 GO:0009637 GO:0006355 GO:0006511 GO:0005515 GO:0004842 GO:0009911","AT1G68050.1","Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.","protein_coding","\"FLAVIN-BINDING, KELCH REPEAT, F BOX 1\" (FKF1)","\"FLAVIN-BINDING, KELCH REPEAT, F BOX 1\" (FKF1)"]
["AT1G68440","Chr1:25658032-25659273","cs","ls","OK",29.1036,9.19643,-1.66205,4.25355,{"v":2.1e-05,"d":"2.10E-05"},0.00148113,"yes","GO:0042398 GO:0009698 GO:0006598 GO:0003674 GO:0005634","AT1G68440.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).","protein_coding"]
["AT1G68840","Chr1:25880322-25882222","cs","ls","OK",63.5006,21.0618,-1.59214,4.7774,{"v":1.78e-06,"d":"1.78E-06"},0.000183597,"yes","GO:0010167 GO:0015706 GO:0003700 GO:0005634 GO:0045892 GO:0010200","AT1G68840.1","Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)","protein_coding","RELATED TO ABI3/VP1 2 (RAV2)","RELATED TO ABI3/VP1 2 (RAV2)"]
["AT1G69550","Chr1:26148020-26153555","cs","ls","OK",3.67877,0.511234,-2.84717,5.08747,{"v":3.63e-07,"d":"3.63E-07"},{"v":4.87e-05,"d":"4.87E-05"},"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT1G69550.1","disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).","protein_coding"]
["AT1G69720","Chr1:26226865-26228580","cs","ls","OK",4.58238,24.0677,2.39293,-3.89759,{"v":9.72e-05,"d":"9.72E-05"},0.00522668,"yes","GO:0004392 GO:0006788 GO:0055114 GO:0020037 GO:0009507","AT1G69720.1","Encodes a member (HO3) of the heme oxygenase family.","protein_coding","HEME OXYGENASE 3 (ho3)","HEME OXYGENASE 3 (ho3)"]
["AT1G69730","Chr1:26228631-26231339","cs","ls","OK",7.65355,2.73885,-1.48256,3.16432,0.00155448,0.0440828,"yes","GO:0006468 GO:0016021 GO:0004674 GO:0005576 GO:0005509 GO:0005524","AT1G69730.1","Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WALL ASSOCIATED KINASE (WAK)-LIKE 10 (TAIR:AT1G79680.1); Has 118696 Blast hits to 117097 proteins in 4295 species: Archae - 105; Bacteria - 13298; Metazoa - 44157; Fungi - 9958; Plants - 33203; Viruses - 492; Other Eukaryotes - 17483 (source: NCBI BLink).","protein_coding"]
["AT1G69870","Chr1:26316026-26320220","cs","ls","OK",15.0698,36.7358,1.28552,-3.99501,{"v":6.47e-05,"d":"6.47E-05"},0.00380688,"yes","GO:0019761 GO:0006857 GO:0080055 GO:0080054 GO:0005886","AT1G69870.1","Encodes a low affinity nitrate transporter NRT1.7. Expressed in phloem. Responsible for source-to-sink remobilization of nitrate.","protein_coding","NITRATE TRANSPORTER 1.7 (NRT1.7)","NITRATE TRANSPORTER 1.7 (NRT1.7)"]
["AT1G69880","Chr1:26321478-26322993","cs","ls","OK",0.232322,4.77204,4.36041,-3.63454,0.000278476,0.0118565,"yes","GO:0005737 GO:0000280 GO:0006499 GO:0006662 GO:0007000 GO:0015035 GO:0045454 GO:0009055","AT1G69880.1","thioredoxin H-type 8 (TH8); INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 7 (TAIR:AT1G59730.1); Has 17541 Blast hits to 17273 proteins in 2948 species: Archae - 242; Bacteria - 9916; Metazoa - 1698; Fungi - 801; Plants - 1602; Viruses - 12; Other Eukaryotes - 3270 (source: NCBI BLink).","protein_coding","THIOREDOXIN H-TYPE 8 (TH8)","THIOREDOXIN H-TYPE 8 (TH8)"]
["AT1G72900","Chr1:27432194-27433782","cs","ls","OK",19.0031,5.09818,-1.89818,4.0405,{"v":5.33e-05,"d":"5.33E-05"},0.00318916,"yes","GO:0005737 GO:0010363 GO:0009862 GO:0006612 GO:0009610 GO:0009625 GO:0031348 GO:0043531 GO:0009693 GO:0043069","AT1G72900.1","Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72940.1); Has 4486 Blast hits to 4351 proteins in 152 species: Archae - 0; Bacteria - 27; Metazoa - 4; Fungi - 0; Plants - 4454; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT1G73260","Chr1:27547273-27548190","cs","ls","OK",0.818705,8.39274,3.35773,-3.94126,{"v":8.11e-05,"d":"8.11E-05"},0.0045452,"yes","GO:0010167 GO:0009751 GO:0015706 GO:0042542 GO:0005739 GO:0012501 GO:0005576 GO:0042742 GO:0004866 GO:0009651","AT1G73260.1","Encodes a trypsin inhibitor involved in modulating programmed cell death in plant-pathogen interactions.","protein_coding","KUNITZ TRYPSIN INHIBITOR 1 (KTI1)","KUNITZ TRYPSIN INHIBITOR 1 (KTI1)"]
["AT1G73330","Chr1:27568717-27569717","cs","ls","OK",7.6951,0.448226,-4.10164,4.45362,{"v":8.44e-06,"d":"8.44E-06"},0.000707221,"yes","GO:0005576 GO:0009414 GO:0004866","AT1G73330.1","encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.","protein_coding","DROUGHT-REPRESSED 4 (DR4)","DROUGHT-REPRESSED 4 (DR4)"]
["AT1G73805","Chr1:27745426-27749178","cs","ls","OK",5.56545,1.29297,-2.10581,3.35231,0.000801408,0.0271944,"yes","GO:0009595 GO:0009867 GO:0006612 GO:0031348 GO:0042742 GO:0001666 GO:0043565 GO:0010310 GO:0080142 GO:0005634 GO:0000165 GO:0010112 GO:0009581 GO:0050832 GO:0035304 GO:0010200 GO:0010363 GO:0003700 GO:0006355 GO:0002237 GO:0005516 GO:0009862","AT1G73805.1","Encodes SAR Deficient 1 (SARD1), a key regulator for ICS1 (Isochorismate Synthase 1) induction and salicylic acid (SA) synthesis.","protein_coding","SAR DEFICIENT 1 (SARD1)","SAR DEFICIENT 1 (SARD1)"]
["AT1G73860","Chr1:27770985-27776857","cs","ls","OK",0.239747,1.46611,2.6124,-3.15427,0.00160901,0.0451774,"yes","GO:0007018 GO:0005524 GO:0003777","AT1G73860.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: petal, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G18410.1); Has 138507 Blast hits to 76202 proteins in 2961 species: Archae - 1220; Bacteria - 20098; Metazoa - 63175; Fungi - 11698; Plants - 7059; Viruses - 430; Other Eukaryotes - 34827 (source: NCBI BLink).","protein_coding"]
["AT1G73885","Chr1:27786863-27787708","cs","ls","OK",287.125,144.595,-0.989664,3.20322,0.00135901,0.0395781,"yes","GO:0009535 GO:0008150 GO:0003674","AT1G73885.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G74230","Chr1:27914698-27917083","cs","ls","OK",72.842,164.41,1.17446,-3.81525,0.000136046,0.00676856,"yes","GO:0005634 GO:0005739 GO:0003723 GO:0010228 GO:0005507 GO:0005524","AT1G74230.1","encodes a glycine-rich RNA binding protein.","protein_coding","GLYCINE-RICH RNA-BINDING PROTEIN 5 (GR-RBP5)","GLYCINE-RICH RNA-BINDING PROTEIN 5 (GR-RBP5)"]
["AT1G75580","Chr1:28377460-28378178","cs","ls","OK",0.502637,5.6395,3.48798,-3.48956,0.000483822,0.0181876,"yes","GO:0009733 GO:0005575 GO:0005516","AT1G75580.1","SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G19830.1); Has 1403 Blast hits to 1386 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1402; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT1G75680","Chr1:28417051-28419529","cs","ls","OK",50.7505,24.0907,-1.07495,3.44726,0.000566302,0.0204766,"yes","GO:0016126 GO:0009664 GO:0009832 GO:0006084 GO:0048767 GO:0009736 GO:0010075 GO:0005982 GO:0016132 GO:0000271 GO:0009825 GO:0043481 GO:0000272 GO:0007389 GO:0009932 GO:0009926 GO:0005886 GO:0004553 GO:0048653 GO:0005576","AT1G75680.1","glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B5 (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).","protein_coding","GLYCOSYL HYDROLASE 9B7 (GH9B7)","GLYCOSYL HYDROLASE 9B7 (GH9B7)"]
["AT1G78100","Chr1:29387794-29389112","cs","ls","OK",13.1411,31.2218,1.24847,-3.39656,0.000682374,0.0238063,"yes","GO:0009733 GO:0009736 GO:0009741 GO:0005634 GO:0003674 GO:0010540 GO:0010541","AT1G78100.1","F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22220.1); Has 149 Blast hits to 148 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","AUXIN UP-REGULATED F-BOX PROTEIN 1 (AUF1)","AUXIN UP-REGULATED F-BOX PROTEIN 1 (AUF1)"]
["AT1G78270","Chr1:29450562-29452417","cs","ls","OK",8.07824,2.30688,-1.80809,3.40298,0.000666547,0.0234558,"yes","GO:0005575 GO:0015020 GO:0008152","AT1G78270.1","UDP-glucosyl transferase 85A4 (UGT85A4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G22400.1); Has 7993 Blast hits to 7875 proteins in 425 species: Archae - 0; Bacteria - 192; Metazoa - 2327; Fungi - 67; Plants - 5218; Viruses - 120; Other Eukaryotes - 69 (source: NCBI BLink).","protein_coding","UDP-GLUCOSYL TRANSFERASE 85A4 (UGT85A4)","UDP-GLUCOSYL TRANSFERASE 85A4 (AtUGT85A4)"]
["AT1G78410","Chr1:29502581-29503241","cs","ls","OK",6.11379,0.622459,-3.29602,3.30966,0.0009341,0.030102,"yes","GO:0050832 GO:0009595 GO:0010310 GO:0010363 GO:0009862 GO:0006612 GO:0000165 GO:0009611 GO:0009723 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0003674 GO:0042742 GO:0006979 GO:0010200","AT1G78410.1","VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G17147.1); Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G78460","Chr1:29518315-29519323","cs","ls","OK",28.6694,7.45317,-1.94359,4.02985,{"v":5.58e-05,"d":"5.58E-05"},0.00332714,"yes","GO:0005737 GO:0008150","AT1G78460.1","SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G17100.1); Has 1017 Blast hits to 990 proteins in 102 species: Archae - 6; Bacteria - 81; Metazoa - 199; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 584 (source: NCBI BLink).","protein_coding"]
["AT1G78830","Chr1:29636954-29638552","cs","ls","OK",99.8775,45.7971,-1.1249,3.71774,0.000201014,0.00925793,"yes","GO:0048046 GO:0005794 GO:0030246 GO:0009506 GO:0009505","AT1G78830.1","Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT1G78850","Chr1:29641925-29643431","cs","ls","OK",108.535,49.8108,-1.12363,3.7187,0.00020025,0.00924457,"yes","GO:0005794 GO:0005829 GO:0030246 GO:0005774 GO:0048046 GO:0005886 GO:0009505","AT1G78850.1","curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein","protein_coding"]
["AT1G79440","Chr1:29882209-29887412","cs","ls","OK",18.5927,41.2409,1.14934,-3.57932,0.000344488,0.0139471,"yes","GO:0004777 GO:0004028 GO:0051287 GO:0006540 GO:0009450 GO:0006333 GO:0009416 GO:0009570 GO:0005759 GO:0009408 GO:0005507 GO:0055114","AT1G79440.1","Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).","protein_coding","ALDEHYDE DEHYDROGENASE 5F1 (ALDH5F1)","SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 (SSADH1)"]
["AT1G79470","Chr1:29894597-29897166","cs","ls","OK",7.81252,18.6994,1.25913,-3.33673,0.000847696,0.0282322,"yes","GO:0003938 GO:0006626 GO:0001510 GO:0006177 GO:0005829 GO:0055114","AT1G79470.1","Aldolase-type TIM barrel family protein; FUNCTIONS IN: IMP dehydrogenase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: oxidation reduction, GMP biosynthetic process, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G16350.1); Has 13395 Blast hits to 12591 proteins in 2701 species: Archae - 175; Bacteria - 7357; Metazoa - 460; Fungi - 182; Plants - 88; Viruses - 2; Other Eukaryotes - 5131 (source: NCBI BLink).","protein_coding"]
["AT1G80080","Chr1:30128004-30129591","cs","ls","OK",6.3094,24.8434,1.97729,-4.90943,{"v":9.13e-07,"d":"9.13E-07"},0.000103613,"yes","GO:0042127 GO:0048443 GO:0009737 GO:0005739 GO:0002237 GO:0007165 GO:0005515 GO:0004872 GO:0008356 GO:0010103 GO:0031225","AT1G80080.1","Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.","protein_coding","TOO MANY MOUTHS (TMM)","RECEPTOR LIKE PROTEIN 17 (AtRLP17)"]
["AT1G80920","Chr1:30400733-30404690","cs","ls","OK",175.622,80.7817,-1.12037,3.42437,0.000616234,0.0220015,"yes","GO:0006457 GO:0009570 GO:0005634 GO:0051082 GO:0009416 GO:0031072","AT1G80920.1","A nuclear encoded soluble protein found in the chloroplast stroma.","protein_coding","(J8)","(J8)"]
["AT1G80940","Chr1:30410700-30412289","cs","ls","OK",53.2084,18.592,-1.51697,4.0091,{"v":6.09e-05,"d":"6.09E-05"},0.00361166,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G80940.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G80970","Chr1:30420101-30421995","cs","ls","OK",2.53878,0.141194,-4.16839,3.28369,0.00102457,0.0321815,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G80970.2","XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH domain-containing protein (TAIR:AT1G80990.1).","protein_coding"]
["AT2G01890","Chr2:396767-399208","cs","ls","OK",5.13918,30.4757,2.56805,-5.68579,{"v":1.3e-08,"d":"1.30E-08"},{"v":2.66e-06,"d":"2.66E-06"},"yes","GO:0010167 GO:0015706 GO:0016311 GO:0004722 GO:0005576 GO:0003993","AT2G01890.1","Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.","protein_coding","PURPLE ACID PHOSPHATASE 8 (PAP8)","PURPLE ACID PHOSPHATASE 8 (ATPAP8)"]
["AT2G02360","Chr2:619405-620768","cs","ls","OK",9.97652,0.193324,-5.68944,5.51746,{"v":3.44e-08,"d":"3.44E-08"},{"v":6.15e-06,"d":"6.15E-06"},"yes","GO:0005634 GO:0030246","AT2G02360.1","phloem protein 2-B10 (PP2-B10); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 572 Blast hits to 558 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","PHLOEM PROTEIN 2-B10 (PP2-B10)","PHLOEM PROTEIN 2-B10 (PP2-B10)"]
["AT2G02850","Chr2:826403-827812","cs","ls","OK",6.83471,0,"-1.79769e+308","-1.79769e+308",0.00106348,0.0331416,"yes","GO:0009856 GO:0048196 GO:0009737 GO:0010162 GO:0019915 GO:0005886 GO:0009933 GO:0010228 GO:0048046 GO:0016567 GO:0009793 GO:0009845 GO:0009055 GO:0050826 GO:0010182 GO:0005507 GO:0048653 GO:0009909 GO:0009640","AT2G02850.1","Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.","protein_coding","PLANTACYANIN (ARPN)","PLANTACYANIN (ARPN)"]
["AT2G02960","Chr2:862086-864447","cs","ls","OK",8.04482,1.14885,-2.80787,3.6607,0.000251532,0.0110468,"yes","GO:0005634 GO:0008270","AT2G02960.5","RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G14260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G03090","Chr2:916853-918643","cs","ls","OK",9.93671,29.1178,1.55106,-3.98854,{"v":6.65e-05,"d":"6.65E-05"},0.00389301,"yes","GO:0009831 GO:0010089 GO:0009826 GO:0009828 GO:0044036 GO:0005576 GO:0006949","AT2G03090.1","member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.","protein_coding","EXPANSIN A15 (EXPA15)","EXPANSIN A15 (ATEXPA15)"]
["AT2G03710","Chr2:1129267-1131838","cs","ls","OK",4.78009,0.145412,-5.03882,4.1095,{"v":3.97e-05,"d":"3.97E-05"},0.00246748,"yes","GO:0048442 GO:0048443 GO:0048440 GO:0048441 GO:0010076 GO:0003700 GO:0005634 GO:0043481 GO:0006355 GO:0010048 GO:0046983","AT2G03710.1","This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.","protein_coding","SEPALLATA 4 (SEP4)","AGAMOUS-LIKE 3 (AGL3)"]
["AT2G03980","Chr2:1259198-1262552","cs","ls","OK",9.02648,0.876061,-3.36506,4.76653,{"v":1.87e-06,"d":"1.87E-06"},0.000191783,"yes","GO:0004091 GO:0005576 GO:0006629","AT2G03980.1","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G04020.1); Has 3198 Blast hits to 3166 proteins in 143 species: Archae - 0; Bacteria - 189; Metazoa - 0; Fungi - 13; Plants - 2979; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).","protein_coding"]
["AT2G04032","Chr2:1289831-1291383","cs","ls","OK",6.81006,1.76708,-1.9463,3.12163,0.00179852,0.0487738,"yes","GO:0016021 GO:0005385 GO:0006833 GO:0010048 GO:0006826 GO:0071577 GO:0005886 GO:0010106","AT2G04032.1","zinc transporter 7 precursor (ZIP7); FUNCTIONS IN: cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, zinc ion transport, metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 1848 Blast hits to 1741 proteins in 306 species: Archae - 0; Bacteria - 134; Metazoa - 385; Fungi - 602; Plants - 510; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).","protein_coding","ZINC TRANSPORTER 7 PRECURSOR (ZIP7)","ZINC TRANSPORTER 7 PRECURSOR (ZIP7)"]
["AT2G04378","Chr2:1525330-1526875","cs","ls","OK",16.6966,0,"-1.79769e+308","-1.79769e+308",{"v":1.37e-05,"d":"1.37E-05"},0.0010402,"yes","GO:0005975 GO:0005739 GO:0004553","AT2G04378.2","Beta-galactosidase related protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT5G01080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G04495","Chr2:1564165-1565106","cs","ls","OK",2.32786,0.170055,-3.77493,3.22631,0.00125395,0.0374319,"yes","GO:0003674 GO:0008150","AT2G04495.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G05540","Chr2:2033155-2034217","cs","ls","OK",46.0854,7.21339,-2.67556,4.94722,{"v":7.53e-07,"d":"7.53E-07"},{"v":8.79e-05,"d":"8.79E-05"},"yes","GO:0005576","AT2G05540.1","Glycine-rich protein family; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.4); Has 20980 Blast hits to 7546 proteins in 779 species: Archae - 6; Bacteria - 3254; Metazoa - 9284; Fungi - 1649; Plants - 4555; Viruses - 118; Other Eukaryotes - 2114 (source: NCBI BLink).","protein_coding"]
["AT2G12905","Chr2:5296363-5296582","cs","ls","OK",7.75146,115.45,3.89666,-4.04324,{"v":5.27e-05,"d":"5.27E-05"},0.00317122,"yes","GO:0008150 GO:0003674 GO:0005739","AT2G12905.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G13665","Chr2:5692096-5693016","cs","ls","OK",3.53927,0,"-1.79769e+308","-1.79769e+308",0.00169933,0.0467671,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G13665.1","Potential natural antisense gene, locus overlaps with AT2G13660","other_rna"]
["AT2G14045","Chr2:5906549-5908374","cs","ls","OK",76.2137,16.6344,-2.19588,5.06702,{"v":4.04e-07,"d":"4.04E-07"},{"v":5.35e-05,"d":"5.35E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT2G14045.1","unknown protein; Has 257 Blast hits to 257 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).","protein_coding"]
["AT2G14080","Chr2:5925185-5929600","cs","ls","OK",6.28192,0.53033,-3.56624,5.99091,{"v":2.09e-09,"d":"2.09E-09"},{"v":5.67e-07,"d":"5.67E-07"},"yes","GO:0005737 GO:0006952 GO:0017111 GO:0043531 GO:0007165","AT2G14080.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 59112 Blast hits to 27121 proteins in 1046 species: Archae - 26; Bacteria - 3020; Metazoa - 5754; Fungi - 417; Plants - 46550; Viruses - 22; Other Eukaryotes - 3323 (source: NCBI BLink).","protein_coding"]
["AT2G14285","Chr2:6052331-6053994","cs","ls","OK",54.0716,0,"-1.79769e+308","-1.79769e+308",{"v":2.21e-08,"d":"2.21E-08"},{"v":4.18e-06,"d":"4.18E-06"},"yes","GO:0005634 GO:0003674 GO:0006396","AT2G14285.1","Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein F (TAIR:AT4G30220.1); Has 827 Blast hits to 827 proteins in 226 species: Archae - 76; Bacteria - 0; Metazoa - 296; Fungi - 206; Plants - 125; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).","protein_coding"]
["AT2G14610","Chr2:6241703-6242463","cs","ls","OK",99.1248,0.780613,-6.98849,8.02021,{"v":1.11e-15,"d":"1.11E-15"},{"v":1.16e-12,"d":"1.16E-12"},"yes","GO:0050832 GO:0009595 GO:0010310 GO:0010363 GO:0010200 GO:0005618 GO:0009862 GO:0006612 GO:0000165 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0003674 GO:0042742 GO:0009414 GO:0005576 GO:0034976 GO:0010266","AT2G14610.1","PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.","protein_coding","PATHOGENESIS-RELATED GENE 1 (PR1)","PATHOGENESIS-RELATED GENE 1 (PR1)"]
["AT2G14880","Chr2:6393331-6394938","cs","ls","OK",165.212,81.792,-1.01428,3.29849,0.000972057,0.0309634,"yes","GO:0008150 GO:0005634 GO:0003674","AT2G14880.1","SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT4G34290.1); Has 1208 Blast hits to 1119 proteins in 254 species: Archae - 0; Bacteria - 214; Metazoa - 140; Fungi - 207; Plants - 389; Viruses - 11; Other Eukaryotes - 247 (source: NCBI BLink).","protein_coding"]
["AT2G15042","Chr2:6510164-6512637","cs","ls","OK",1.93987,0,"-1.79769e+308","-1.79769e+308",0.000821536,0.0277825,"yes","GO:0008150 GO:0005886","AT2G15042.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1); Has 56306 Blast hits to 17936 proteins in 777 species: Archae - 23; Bacteria - 1630; Metazoa - 5114; Fungi - 406; Plants - 45797; Viruses - 0; Other Eukaryotes - 3336 (source: NCBI BLink).","protein_coding"]
["AT2G15080","Chr2:6533686-6536995","cs","ls","OK",5.23682,1.15916,-2.17561,4.36419,{"v":1.28e-05,"d":"1.28E-05"},0.000981715,"yes","GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0031348 GO:0009867 GO:0016301 GO:0035304 GO:0005576","AT2G15080.1","receptor like protein 19 (RLP19); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 53 (TAIR:AT5G27060.1); Has 148554 Blast hits to 34281 proteins in 1300 species: Archae - 57; Bacteria - 11858; Metazoa - 32168; Fungi - 1631; Plants - 90272; Viruses - 42; Other Eukaryotes - 12526 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 19 (RLP19)","RECEPTOR LIKE PROTEIN 19 (RLP19)"]
["AT2G15230","Chr2:6612580-6615395","cs","ls","OK",7.00762,1.68496,-2.05621,3.33073,0.000866191,0.0285627,"yes","GO:0004806 GO:0006629 GO:0005615","AT2G15230.1","Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular.","protein_coding","LIPASE 1 (LIP1)","LIPASE 1 (LIP1)"]
["AT2G15292","Chr2:6644280-6645533","cs","ls","OK",9.93398,0,"-1.79769e+308","-1.79769e+308",{"v":8.74e-07,"d":"8.74E-07"},0.000100334,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G15292.1","Unknown gene","other_rna"]
["AT2G15880","Chr2:6918038-6920319","cs","ls","OK",3.1436,0.464635,-2.75825,3.70446,0.000211841,0.00960106,"yes","GO:0005634 GO:0005199","AT2G15880.1","Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G33970.1); Has 436796 Blast hits to 106000 proteins in 3186 species: Archae - 830; Bacteria - 85977; Metazoa - 139472; Fungi - 51372; Plants - 100247; Viruses - 9779; Other Eukaryotes - 49119 (source: NCBI BLink).","protein_coding"]
["AT2G16050","Chr2:6980449-6982101","cs","ls","OK",1.90795,0.0662628,-4.84768,3.19834,0.00138223,0.0400563,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G16050.1","Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G20990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G16660","Chr2:7218705-7221625","cs","ls","OK",71.2217,24.3528,-1.54823,4.99176,{"v":5.98e-07,"d":"5.98E-07"},{"v":7.27e-05,"d":"7.27E-05"},"yes","GO:0009507","AT2G16660.1","Major facilitator superfamily protein; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 3381 Blast hits to 3270 proteins in 872 species: Archae - 26; Bacteria - 1620; Metazoa - 6; Fungi - 314; Plants - 598; Viruses - 0; Other Eukaryotes - 817 (source: NCBI BLink).","protein_coding"]
["AT2G16700","Chr2:7244607-7245741","cs","ls","OK",18.5054,69.953,1.91844,-4.90533,{"v":9.33e-07,"d":"9.33E-07"},0.000105198,"yes","GO:0005737 GO:0003779 GO:0008150","AT2G16700.1","Encodes actin depolymerizing factor 5 (ADF5).","protein_coding","ACTIN DEPOLYMERIZING FACTOR 5 (ADF5)","ACTIN DEPOLYMERIZING FACTOR 5 (ADF5)"]
["AT2G17870","Chr2:7763974-7765230","cs","ls","OK",36.8445,78.2545,1.08672,-3.26843,0.00108147,0.0332841,"yes","GO:0005737 GO:0005634 GO:0009631 GO:0008270 GO:0003677 GO:0032508","AT2G17870.1","Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance.","protein_coding","COLD SHOCK DOMAIN PROTEIN 3 (CSP3)","COLD SHOCK DOMAIN PROTEIN 3 (CSP3)"]
["AT2G18150","Chr2:7892132-7893653","cs","ls","OK",4.36095,0.139968,-4.96148,4.40463,{"v":1.06e-05,"d":"1.06E-05"},0.00083473,"yes","GO:0020037 GO:0005618 GO:0009624 GO:0004601 GO:0005576 GO:0006979 GO:0055114","AT2G18150.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction, response to nematode; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18140.1); Has 4666 Blast hits to 4632 proteins in 286 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 258; Plants - 4338; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).","protein_coding"]
["AT2G18440","Chr2:7994940-7997239","cs","ls","OK",71.6603,142.879,0.995546,-3.25846,0.00112018,0.0341403,"yes","GO:0003674","AT2G18440.1","Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product.","other_rna","GENE WITH UNSTABLE TRANSCRIPT 15 (GUT15)","GENE WITH UNSTABLE TRANSCRIPT 15 (GUT15)"]
["AT2G18600","Chr2:8073199-8074982","cs","ls","OK",0.999232,7.52294,2.9124,-3.63399,0.000279069,0.0118565,"yes","GO:0004842 GO:0006301","AT2G18600.1","Ubiquitin-conjugating enzyme family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding; INVOLVED IN: regulation of protein metabolic process, protein modification process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: RUB1 conjugating enzyme 1 (TAIR:AT4G36800.2); Has 8339 Blast hits to 8336 proteins in 387 species: Archae - 0; Bacteria - 2; Metazoa - 3796; Fungi - 1734; Plants - 1481; Viruses - 20; Other Eukaryotes - 1306 (source: NCBI BLink).","protein_coding"]
["AT2G18690","Chr2:8097419-8098827","cs","ls","OK",3.2763,0.423496,-2.95165,3.42278,0.000619848,0.0220908,"yes","GO:0006612 GO:0010363 GO:0009863 GO:0016020 GO:0006569 GO:0009684 GO:0050832 GO:0003674 GO:0009507 GO:0043069 GO:0010200","AT2G18690.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF975 (InterPro:IPR010380); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18680.1); Has 213 Blast hits to 211 proteins in 20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G19400","Chr2:8399156-8402601","cs","ls","OK",6.80934,1.50383,-2.17888,3.72162,0.00019795,0.00922418,"yes","GO:0004674 GO:0005634 GO:0006468 GO:0005524","AT2G19400.1","AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT4G33080.1); Has 103456 Blast hits to 101588 proteins in 3064 species: Archae - 123; Bacteria - 12796; Metazoa - 37501; Fungi - 11276; Plants - 22937; Viruses - 407; Other Eukaryotes - 18416 (source: NCBI BLink).","protein_coding"]
["AT2G20670","Chr2:8911859-8913534","cs","ls","OK",336.26,140.66,-1.25737,4.26778,{"v":1.97e-05,"d":"1.97E-05"},0.00143037,"yes","GO:0005634 GO:0009507","AT2G20670.1","Protein of unknown function (DUF506) ; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G32480.1); Has 375 Blast hits to 373 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding"]
["AT2G20750","Chr2:8941118-8942689","cs","ls","OK",4.51513,0.412496,-3.45232,3.61036,0.000305778,0.0126458,"yes","GO:0009826 GO:0005576 GO:0019953 GO:0009828","AT2G20750.1","member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)","protein_coding","EXPANSIN B1 (EXPB1)","EXPANSIN B1 (ATEXPB1)"]
["AT2G20850","Chr2:8975347-8979379","cs","ls","OK",9.15277,3.55241,-1.36541,3.32596,0.000881147,0.0289597,"yes","GO:0009506 GO:0006468 GO:0004713 GO:0005524","AT2G20850.1","STRUBBELIG-receptor family 1 (SRF1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 150345 Blast hits to 104966 proteins in 4098 species: Archae - 89; Bacteria - 11039; Metazoa - 39266; Fungi - 7103; Plants - 77215; Viruses - 282; Other Eukaryotes - 15351 (source: NCBI BLink).","protein_coding","STRUBBELIG-RECEPTOR FAMILY 1 (SRF1)","STRUBBELIG-RECEPTOR FAMILY 1 (SRF1)"]
["AT2G21010","Chr2:9020943-9021870","cs","ls","OK",0.0679036,7.06679,6.70142,-3.86891,0.000109323,0.00574118,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G21010.1","C2 domain-containing protein. Possible pseudogene of AT2G20990.","protein_coding"]
["AT2G21130","Chr2:9055397-9056232","cs","ls","OK",22.61,121.595,2.42705,-6.61843,{"v":3.63e-11,"d":"3.63E-11"},{"v":1.8e-08,"d":"1.80E-08"},"yes","GO:0006457 GO:0007623 GO:0009414 GO:0005829 GO:0003755 GO:0005886 GO:0009409 GO:0009737","AT2G21130.1","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).","protein_coding"]
["AT2G21140","Chr2:9060624-9062091","cs","ls","OK",36.9919,11.3262,-1.70754,4.38734,{"v":1.15e-05,"d":"1.15E-05"},0.000893244,"yes","GO:0005618 GO:0009664","AT2G21140.1","Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.","protein_coding","PROLINE-RICH PROTEIN 2 (PRP2)","PROLINE-RICH PROTEIN 2 (PRP2)"]
["AT2G21660","Chr2:9265248-9266393","cs","ls","OK",1472.76,5493.5,1.8992,-5.74101,{"v":9.41e-09,"d":"9.41E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0045087 GO:0048046 GO:0009414 GO:0010043 GO:0009651 GO:0006096 GO:0006094 GO:0000380 GO:0005634 GO:0005777 GO:0005739 GO:0046686 GO:0003690 GO:0010501 GO:0003697 GO:0006406 GO:0007623 GO:0032508 GO:0006833 GO:0010119 GO:0006972 GO:0010228 GO:0009409 GO","AT2G21660.1","Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).","protein_coding","GLYCINE-RICH RNA-BINDING PROTEIN 7 (GRP7)","GLYCINE RICH PROTEIN 7 (ATGRP7)"]
["AT2G21860","Chr2:9318257-9320002","cs","ls","OK",65.3176,13.5106,-2.27338,6.63029,{"v":3.35e-11,"d":"3.35E-11"},{"v":1.71e-08,"d":"1.71E-08"},"yes","GO:0016126 GO:0003674 GO:0009507","AT2G21860.1","violaxanthin de-epoxidase-related; BEST Arabidopsis thaliana protein match is: non-photochemical quenching 1 (TAIR:AT1G08550.2); Has 151 Blast hits to 151 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).","protein_coding"]
["AT2G22080","Chr2:9386515-9388183","cs","ls","OK",44.857,100.981,1.17068,-3.55444,0.00037879,0.0150087,"yes","GO:0005634 GO:0003674 GO:0006979","AT2G22080.1","unknown protein; Has 96314 Blast hits to 34847 proteins in 1702 species: Archae - 612; Bacteria - 27969; Metazoa - 24311; Fungi - 12153; Plants - 4409; Viruses - 1572; Other Eukaryotes - 25288 (source: NCBI BLink).","protein_coding"]
["AT2G23130","Chr2:9844298-9845385","cs","ls","OK",93.2394,15.8248,-2.55875,5.04939,{"v":4.43e-07,"d":"4.43E-07"},{"v":5.79e-05,"d":"5.79E-05"},"yes","GO:0010583 GO:0031225 GO:0003674 GO:0005886","AT2G23130.1","AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.","protein_coding","ARABINOGALACTAN PROTEIN 17 (AGP17)","ARABINOGALACTAN PROTEIN 17 (AGP17)"]
["AT2G23600","Chr2:10042198-10043673","cs","ls","OK",111.422,29.5531,-1.91465,5.742,{"v":9.36e-09,"d":"9.36E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0005737 GO:0009696 GO:0080032 GO:0080031 GO:0080030","AT2G23600.1","Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES2 appears to be involved in MeSA hydrolysis in planta. This protein does not act on MeGA4, or MEGA9 in vitro.","protein_coding","ACETONE-CYANOHYDRIN LYASE (ACL)","ACETONE-CYANOHYDRIN LYASE (ACL)"]
["AT2G23770","Chr2:10120241-10122080","cs","ls","OK",4.83327,0.953128,-2.34226,3.58607,0.000335699,0.0137119,"yes","GO:0071323 GO:0045087 GO:0016301 GO:0008061 GO:0071219 GO:0005886 GO:0009507","AT2G23770.1","protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Immunoglobulin-like (InterPro:IPR007110), Protein kinase, catalytic domain (InterPro:IPR000719), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G33580.1); Has 93408 Blast hits to 92552 proteins in 3130 species: Archae - 75; Bacteria - 9623; Metazoa - 34895; Fungi - 6839; Plants - 28747; Viruses - 328; Other Eukaryotes - 12901 (source: NCBI BLink).","protein_coding","LYSM-CONTAINING RECEPTOR-LIKE KINASE 4 (LYK4)","LYSM-CONTAINING RECEPTOR-LIKE KINASE 4 (LYK4)"]
["AT2G24550","Chr2:10427855-10429222","cs","ls","OK",50.6909,18.4548,-1.45773,4.08986,{"v":4.32e-05,"d":"4.32E-05"},0.0026446,"yes","GO:0005634 GO:0006612 GO:0003674 GO:0009963 GO:0010363","AT2G24550.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).","protein_coding"]
["AT2G24600","Chr2:10452115-10454524","cs","ls","OK",8.63002,0.544014,-3.98765,5.23117,{"v":1.68e-07,"d":"1.68E-07"},{"v":2.42e-05,"d":"2.42E-05"},"yes","GO:0005575 GO:0008150","AT2G24600.3","Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G25450","Chr2:10829915-10831655","cs","ls","OK",151.212,0.452543,-8.3843,10.9487,0,0,"yes","GO:0005737 GO:0016706 GO:0009815 GO:0010439 GO:0009506 GO:0055114","AT2G25450.1","encodes a protein whose sequence is similar to ACC oxidase","protein_coding"]
["AT2G25510","Chr2:10856371-10857156","cs","ls","OK",142.871,0,"-1.79769e+308","-1.79769e+308",{"v":3.23e-10,"d":"3.23E-10"},{"v":1.12e-07,"d":"1.12E-07"},"yes","GO:0008150 GO:0003674 GO:0005739","AT2G25510.1","unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G25735","Chr2:10975059-10975759","cs","ls","OK",20.5353,2.4734,-3.05354,4.59268,{"v":4.38e-06,"d":"4.38E-06"},0.000415635,"yes","GO:0010200 GO:0030968 GO:0009611 GO:0005739 GO:0050832 GO:0002679 GO:0003674 GO:0005886 GO:0002237 GO:0006979","AT2G25735.1","unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G25964","Chr2:11068643-11071287","cs","ls","OK",4.73669,25.6979,2.4397,-3.50925,0.000449369,0.0171546,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G25964.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G26190","Chr2:11147638-11150510","cs","ls","OK",33.2989,16.0386,-1.05393,3.15606,0.00159915,0.0449643,"yes","GO:0005516 GO:0006499","AT2G26190.1","calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT4G33050.3); Has 368 Blast hits to 279 proteins in 59 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 105; Plants - 232; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).","protein_coding"]
["AT2G26470","Chr2:11259152-11262494","cs","ls","OK",7.83818,1.21757,-2.68651,4.2152,{"v":2.5e-05,"d":"2.50E-05"},0.00167929,"yes","GO:0008150 GO:0005634 GO:0003674","AT2G26470.1","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink).","protein_coding"]
["AT2G26530","Chr2:11282774-11284229","cs","ls","OK",31.6493,10.9554,-1.53054,4.08743,{"v":4.36e-05,"d":"4.36E-05"},0.00265858,"yes","GO:0010363 GO:0009863 GO:0006612 GO:0009867 GO:0009611 GO:0009612 GO:0003674 GO:0005886 GO:0009646 GO:0009507 GO:0010200","AT2G26530.1","unknown function","protein_coding","(AR781)","(AR781)"]
["AT2G27402","Chr2:11723524-11724362","cs","ls","OK",19.2457,0.484509,-5.31187,6.22886,{"v":4.7e-10,"d":"4.70E-10"},{"v":1.48e-07,"d":"1.48E-07"},"yes","GO:0005575 GO:0003674 GO:0008150","AT2G27402.1","BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 18 (TAIR:AT2G32180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G28190","Chr2:12014497-12016569","cs","ls","OK",135.967,40.2262,-1.75704,5.37264,{"v":7.76e-08,"d":"7.76E-08"},{"v":1.27e-05,"d":"1.27E-05"},"yes","GO:0009579 GO:0071329 GO:0035195 GO:0009407 GO:0071493 GO:0046688 GO:0071472 GO:0009570 GO:0071484 GO:0048046 GO:0019430 GO:0008270 GO:0071457 GO:0010039 GO:0004784 GO:0005507","AT2G28190.1","Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Activation depends totally on CCS.","protein_coding","COPPER/ZINC SUPEROXIDE DISMUTASE 2 (CSD2)","COPPER/ZINC SUPEROXIDE DISMUTASE 2 (CZSOD2)"]
["AT2G28210","Chr2:12029996-12032420","cs","ls","OK",33.2548,6.52183,-2.35021,4.39237,{"v":1.12e-05,"d":"1.12E-05"},0.000876279,"yes","GO:0005737 GO:0006730 GO:0016020 GO:0009723 GO:0008270 GO:0010037 GO:0004089","AT2G28210.1","alpha carbonic anhydrase 2 (ACA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to carbon dioxide, one-carbon metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 7 (TAIR:AT1G08080.1); Has 3295 Blast hits to 3278 proteins in 530 species: Archae - 0; Bacteria - 691; Metazoa - 2036; Fungi - 83; Plants - 323; Viruses - 2; Other Eukaryotes - 160 (source: NCBI BLink).","protein_coding","ALPHA CARBONIC ANHYDRASE 2 (ACA2)","ALPHA CARBONIC ANHYDRASE 2 (ACA2)"]
["AT2G28740","Chr2:12329487-12329995","cs","ls","OK",312.819,631.598,1.01368,-3.41064,0.000648114,0.0228966,"yes","GO:0005730 GO:0006334 GO:0000786 GO:0009414 GO:0003677","AT2G28740.1","histone 4","protein_coding","HISTONE H4 (HIS4)","HISTONE H4 (HIS4)"]
["AT2G28900","Chr2:12414113-12415578","cs","ls","OK",167.609,357.432,1.09256,-3.7014,0.00021441,0.00969534,"yes","GO:0009744 GO:0015450 GO:0009753 GO:0005773 GO:0009707 GO:0009611 GO:0042742 GO:0009409 GO:0009749 GO:0015171 GO:0045037","AT2G28900.1","Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.","protein_coding","OUTER PLASTID ENVELOPE PROTEIN 16-1 (OEP16-1)","OUTER PLASTID ENVELOPE PROTEIN 16-L (ATOEP16-L)"]
["AT2G29170","Chr2:12541863-12542282","cs","ls","OK",19.6791,1.49806,-3.7155,3.35033,0.000807166,0.0273431,"yes","GO:0016491 GO:0005576 GO:0008152 GO:0000166","AT2G29170.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G29350","Chr2:12600913-12602556","cs","ls","OK",0.464328,3.61641,2.96134,-3.2038,0.00135624,0.0395781,"yes","GO:0002213 GO:0009507 GO:0007568 GO:0004022 GO:0000166","AT2G29350.1","senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase","protein_coding","SENESCENCE-ASSOCIATED GENE 13 (SAG13)","SENESCENCE-ASSOCIATED GENE 13 (SAG13)"]
["AT2G29420","Chr2:12616563-12618899","cs","ls","OK",6.08993,22.5024,1.88558,-3.68302,0.000230488,0.0102928,"yes","GO:0010583 GO:0005829 GO:0004364 GO:0009751 GO:0009407","AT2G29420.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 7 (GSTU7)","GLUTATHIONE S-TRANSFERASE TAU 7 (ATGSTU7)"]
["AT2G29470","Chr2:12628540-12629543","cs","ls","OK",0.107059,5.5793,5.70361,-4.5863,{"v":4.51e-06,"d":"4.51E-06"},0.000426486,"yes","GO:0005737 GO:0004364 GO:0080129 GO:0006635 GO:0043161 GO:0009407 GO:0051788","AT2G29470.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 3 (GSTU3)","GLUTATHIONE S-TRANSFERASE TAU 3 (ATGSTU3)"]
["AT2G29670","Chr2:12681957-12685087","cs","ls","OK",95.6051,39.5823,-1.27223,4.25755,{"v":2.07e-05,"d":"2.07E-05"},0.00146191,"yes","GO:0009507","AT2G29670.1","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 535 Blast hits to 340 proteins in 62 species: Archae - 10; Bacteria - 119; Metazoa - 2; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).","protein_coding"]
["AT2G30210","Chr2:12887445-12889874","cs","ls","OK",0.744749,0.0234109,-4.9915,3.30552,0.000947996,0.0303527,"yes","GO:0048046 GO:0005507 GO:0046274 GO:0055114 GO:0016491","AT2G30210.1","putative laccase, a member of laccase family of genes (17 members in Arabidopsis).","protein_coding","LACCASE 3 (LAC3)","LACCASE 3 (LAC3)"]
["AT2G30520","Chr2:13002741-13005600","cs","ls","OK",75.4674,38.4876,-0.971461,3.13801,0.00170097,0.0467671,"yes","GO:0005737 GO:0007030 GO:0009954 GO:0005634 GO:0006816 GO:0009638 GO:0019344 GO:0004871 GO:0005886 GO:0010227 GO:0009651 GO:0048439","AT2G30520.1","light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis","protein_coding","ROOT PHOTOTROPISM 2 (RPT2)","ROOT PHOTOTROPISM 2 (RPT2)"]
["AT2G30766","Chr2:13105769-13108863","cs","ls","OK",88.1752,11.0469,-2.99674,5.28529,{"v":1.26e-07,"d":"1.26E-07"},{"v":1.96e-05,"d":"1.96E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT2G30766.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G30790","Chr2:13118936-13120090","cs","ls","OK",10.2034,2.18135,-2.22575,3.18755,0.00143483,0.0412703,"yes","GO:0010207 GO:0009570 GO:0019898 GO:0005509 GO:0030095 GO:0009654 GO:0009543","AT2G30790.1","Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.","protein_coding","PHOTOSYSTEM II SUBUNIT P-2 (PSBP-2)","PHOTOSYSTEM II SUBUNIT P-2 (PSBP-2)"]
["AT2G32030","Chr2:13632467-13633335","cs","ls","OK",2.57456,0.135901,-4.2437,3.37053,0.000750224,0.0256771,"yes","GO:0005737 GO:0009738 GO:0010200 GO:0008080 GO:0009693 GO:0050832 GO:0002679 GO:0009873","AT2G32030.1","Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT2G32020.1); Has 9856 Blast hits to 9837 proteins in 1766 species: Archae - 84; Bacteria - 9082; Metazoa - 1; Fungi - 109; Plants - 131; Viruses - 3; Other Eukaryotes - 446 (source: NCBI BLink).","protein_coding"]
["AT2G32180","Chr2:13671840-13673376","cs","ls","OK",56.1939,135.096,1.2655,-3.66599,0.00024638,0.0108484,"yes","GO:0009508 GO:0008150 GO:0003674 GO:0009507","AT2G32180.1","plastid transcriptionally active 18 (PTAC18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G32650.2); Has 271 Blast hits to 271 proteins in 67 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).","protein_coding","PLASTID TRANSCRIPTIONALLY ACTIVE 18 (PTAC18)","PLASTID TRANSCRIPTIONALLY ACTIVE 18 (PTAC18)"]
["AT2G32870","Chr2:13944610-13946790","cs","ls","OK",12.9367,28.3213,1.13042,-3.29399,0.000987775,0.0313397,"yes","GO:0008150 GO:0005634 GO:0003674","AT2G32870.1","TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G32880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G33380","Chr2:14144830-14146471","cs","ls","OK",2.69309,19.1678,2.83135,-3.83886,0.000123608,0.00628471,"yes","GO:0031969 GO:0009737 GO:0005773 GO:0009620 GO:0010118 GO:0031407 GO:0009409 GO:0005509 GO:0009269 GO:0009751 GO:0042538","AT2G33380.1","Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. Isoform of caleosin with a role as a peroxygenase involved in oxylipin metabolism during biotic and abiotic stress.","protein_coding","RESPONSIVE TO DESSICATION 20 (RD20)","RESPONSIVE TO DESSICATION 20 (RD20)"]
["AT2G33850","Chr2:14321061-14322049","cs","ls","OK",89.5122,29.6554,-1.59379,4.65671,{"v":3.21e-06,"d":"3.21E-06"},0.000317325,"yes","GO:0003674 GO:0005576 GO:0008150","AT2G33850.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink).","protein_coding"]
["AT2G34010","Chr2:14368855-14370438","cs","ls","OK",1.92147,0.0715545,-4.74702,3.84719,0.000119479,0.00620884,"yes","GO:0048366 GO:0005634 GO:0045892 GO:0005515","AT2G34010.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29010.1); Has 32 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding"]
["AT2G34810","Chr2:14685255-14687062","cs","ls","OK",4.82055,15.7811,1.71093,-3.9497,{"v":7.82e-05,"d":"7.82E-05"},0.00440033,"yes","GO:0005737 GO:0050660 GO:0008762 GO:0009620 GO:0009867 GO:0009611 GO:0009695 GO:0055114 GO:0009055","AT2G34810.1","FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30720.1); Has 4560 Blast hits to 4463 proteins in 716 species: Archae - 40; Bacteria - 1976; Metazoa - 12; Fungi - 1639; Plants - 673; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).","protein_coding"]
["AT2G34840","Chr2:14702487-14704353","cs","ls","OK",7.76737,0,"-1.79769e+308","-1.79769e+308",{"v":2.13e-05,"d":"2.13E-05"},0.00148832,"yes","GO:0008565 GO:0005829 GO:0006890 GO:0030126 GO:0005198","AT2G34840.1","Coatomer epsilon subunit; FUNCTIONS IN: protein transporter activity, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: COPI vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT1G30630.1); Has 446 Blast hits to 446 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 175; Fungi - 107; Plants - 92; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).","protein_coding"]
["AT2G35810","Chr2:15049149-15050323","cs","ls","OK",6.82334,29.4638,2.11039,-4.11822,{"v":3.82e-05,"d":"3.82E-05"},0.00239091,"yes","GO:0005829 GO:0019344 GO:0003674","AT2G35810.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35830.2); Has 153 Blast hits to 153 proteins in 52 species: Archae - 0; Bacteria - 62; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","protein_coding"]
["AT2G36120","Chr2:15165436-15166465","cs","ls","OK",74.3876,32.7391,-1.18405,3.14224,0.00167658,0.0463535,"yes","GO:0010087 GO:0010305 GO:0010588 GO:0048366","AT2G36120.1","Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.","protein_coding","DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1)","DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1)"]
["AT2G37110","Chr2:15592551-15594014","cs","ls","OK",58.1395,27.711,-1.06906,3.12759,0.00176243,0.047926,"yes","GO:0005737 GO:0006865 GO:0003674 GO:0010200 GO:0006499","AT2G37110.1","PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT2G40935.1); Has 380 Blast hits to 379 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 19; Plants - 350; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT2G37430","Chr2:15706356-15707224","cs","ls","OK",1.65569,0.0607547,-4.76829,3.15002,0.00163259,0.0455169,"yes","GO:0010200 GO:0003700 GO:0005634 GO:0006355 GO:0002679 GO:0008270 GO:0009693","AT2G37430.1","C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: cotyledon, root, petiole; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G53600.1); Has 5065 Blast hits to 4182 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 4138; Fungi - 12; Plants - 806; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).","protein_coding"]
["AT2G37770","Chr2:15834866-15837001","cs","ls","OK",1.67404,7.56507,2.17602,-3.21366,0.00131054,0.0387022,"yes","GO:0016229 GO:0008106 GO:0070401 GO:0009414 GO:0009409 GO:0009651 GO:0055114 GO:0009507","AT2G37770.2","Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including saturated and unsaturated aldehydes, steroids, and sugars. GFP-tagged AKR4C9 localizes to the chloroplast where it may play a role in detoxifying reactive carbonyl compounds that threaten to impair the photosynthetic process. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.","protein_coding","CHLOROPLASTIC ALDO-KETO REDUCTASE (ChlAKR)","CHLOROPLASTIC ALDO-KETO REDUCTASE (ChlAKR)"]
["AT2G38240","Chr2:16012534-16014753","cs","ls","OK",0.0351511,2.46904,6.13424,-3.83122,0.000127508,0.00640802,"yes","GO:0005737 GO:0010583 GO:0055114 GO:0009407 GO:0016706","AT2G38240.1","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8819 Blast hits to 8740 proteins in 1012 species: Archae - 0; Bacteria - 1137; Metazoa - 112; Fungi - 1067; Plants - 5036; Viruses - 0; Other Eukaryotes - 1467 (source: NCBI BLink).","protein_coding"]
["AT2G38380","Chr2:16076383-16078583","cs","ls","OK",9.15587,2.54074,-1.84945,3.27199,0.00106793,0.0331898,"yes","GO:0020037 GO:0006979 GO:0005576 GO:0010043 GO:0009651 GO:0009505 GO:0055114 GO:0004601","AT2G38380.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to zinc ion, response to salt stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38390.1); Has 4386 Blast hits to 4361 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 86; Plants - 4250; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","protein_coding"]
["AT2G38390","Chr2:16079680-16081509","cs","ls","OK",5.47318,0.873033,-2.64827,3.47723,0.000506631,0.0186243,"yes","GO:0020037 GO:0004601 GO:0005576 GO:0009651 GO:0006979 GO:0055114","AT2G38390.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38380.1); Has 4338 Blast hits to 4309 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 52; Plants - 4237; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).","protein_coding"]
["AT2G38470","Chr2:16108360-16111797","cs","ls","OK",21.1751,4.62103,-2.19608,4.96135,{"v":7e-07,"d":"7.00E-07"},{"v":8.31e-05,"d":"8.31E-05"},"yes","GO:0009595 GO:0000165 GO:0006612 GO:0010120 GO:0031348 GO:0009697 GO:0042742 GO:0009414 GO:0009651 GO:0010310 GO:0009862 GO:0005634 GO:0009867 GO:0010508 GO:0043069 GO:0050832 GO:0043900 GO:0009409 GO:0010200 GO:0010363 GO:0003700 GO:0002679 GO:0006355 GO","AT2G38470.1","Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.","protein_coding","WRKY DNA-BINDING PROTEIN 33 (WRKY33)","WRKY DNA-BINDING PROTEIN 33 (ATWRKY33)"]
["AT2G38720","Chr2:16188046-16192266","cs","ls","OK",5.84436,16.1268,1.46434,-3.59223,0.00032786,0.0134193,"yes","GO:0009524 GO:0005819 GO:0055028 GO:0051322 GO:0008017 GO:0009574 GO:0046785 GO:0009506","AT2G38720.1","microtubule-associated protein 65-5 (MAP65-5); CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated protein 65-2 (TAIR:AT4G26760.1); Has 9645 Blast hits to 7381 proteins in 767 species: Archae - 226; Bacteria - 1139; Metazoa - 4615; Fungi - 969; Plants - 706; Viruses - 30; Other Eukaryotes - 1960 (source: NCBI BLink).","protein_coding","MICROTUBULE-ASSOCIATED PROTEIN 65-5 (MAP65-5)","MICROTUBULE-ASSOCIATED PROTEIN 65-5 (MAP65-5)"]
["AT2G38995","Chr2:16282119-16284868","cs","ls","OK",3.48225,0.585243,-2.57291,3.1872,0.00143659,0.0412703,"yes","GO:0005634 GO:0004144","AT2G38995.1","O-acyltransferase (WSD1-like) family protein; CONTAINS InterPro DOMAIN/s: O-acyltransferase, WSD1, C-terminal (InterPro:IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: O-acyltransferase (WSD1-like) family protein (TAIR:AT5G37300.1); Has 952 Blast hits to 940 proteins in 139 species: Archae - 2; Bacteria - 706; Metazoa - 10; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).","protein_coding"]
["AT2G39400","Chr2:16452611-16454801","cs","ls","OK",15.8176,4.05376,-1.96419,3.73734,0.00018598,0.00887473,"yes","GO:0005737 GO:0016787","AT2G39400.1","alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G55180.1); Has 4815 Blast hits to 4811 proteins in 1490 species: Archae - 34; Bacteria - 3394; Metazoa - 137; Fungi - 136; Plants - 554; Viruses - 35; Other Eukaryotes - 525 (source: NCBI BLink).","protein_coding"]
["AT2G39800","Chr2:16596986-16603319","cs","ls","OK",45.3478,100.554,1.14886,-3.63971,0.00027295,0.011779,"yes","GO:0042538 GO:0006561 GO:0009555 GO:0004349 GO:0016020 GO:0004350 GO:0048364 GO:0005739 GO:0017084 GO:0009269 GO:0009737 GO:0006979 GO:0009507","AT2G39800.1","encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.","protein_coding","DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1 (P5CS1)","(ATP5CS)"]
["AT2G40000","Chr2:16700509-16702028","cs","ls","OK",39.9168,14.0073,-1.51081,4.33781,{"v":1.44e-05,"d":"1.44E-05"},0.00108608,"yes","GO:0009751 GO:0010200 GO:0009816 GO:0005739 GO:0005515 GO:0009646 GO:0006979","AT2G40000.1","ortholog of sugar beet HS1 PRO-1 2 (HSPRO2); CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: Hs1pro-1 protein (TAIR:AT3G55840.1); Has 71 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).","protein_coding","ORTHOLOG OF SUGAR BEET HS1 PRO-1 2 (HSPRO2)","ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2 (ATHSPRO2)"]
["AT2G40080","Chr2:16734293-16734912","cs","ls","OK",7.83641,25.9056,1.725,-3.15346,0.00161347,0.0452388,"yes","GO:0048573 GO:0005634 GO:0042753 GO:0009649 GO:0010017 GO:0010114 GO:0009909 GO:0042803","AT2G40080.1","Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.","protein_coding","EARLY FLOWERING 4 (ELF4)","EARLY FLOWERING 4 (ELF4)"]
["AT2G40300","Chr2:16831292-16833280","cs","ls","OK",46.7049,116.291,1.31609,-4.1371,{"v":3.52e-05,"d":"3.52E-05"},0.00220956,"yes","GO:0009941 GO:0006879 GO:0010228 GO:0048366 GO:0009570 GO:0010039 GO:0005739 GO:0000302 GO:0008199 GO:0009793 GO:0006826 GO:0048481 GO:0010027 GO:0016226 GO:0015979 GO:0055114 GO:0016491","AT2G40300.1","Encodes FERRITIN 4, AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. Localize to mitochondria. Knock out mutants are not sensitive to abiotic stress.","protein_coding","FERRITIN 4 (FER4)","FERRITIN 4 (FER4)"]
["AT2G40750","Chr2:17000453-17002468","cs","ls","OK",6.99629,0.853617,-3.03493,4.18373,{"v":2.87e-05,"d":"2.87E-05"},0.00187258,"yes","GO:0043565 GO:0009595 GO:0010310 GO:0010363 GO:0006355 GO:0050832 GO:0009862 GO:0005634 GO:0006612 GO:0000165 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0042742 GO:0005515 GO:0003700 GO:0010200","AT2G40750.1","member of WRKY Transcription Factor; Group III","protein_coding","WRKY DNA-BINDING PROTEIN 54 (WRKY54)","WRKY DNA-BINDING PROTEIN 54 (WRKY54)"]
["AT2G40920","Chr2:17072463-17074164","cs","ls","OK",24.4397,2.14078,-3.51302,6.44634,{"v":1.15e-10,"d":"1.15E-10"},{"v":4.64e-08,"d":"4.64E-08"},"yes","GO:0008150 GO:0005634 GO:0003674","AT2G40920.1","F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated domain, type 3 (InterPro:IPR013187), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G40910.1); Has 1328 Blast hits to 1276 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1327; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT2G41090","Chr2:17135720-17136852","cs","ls","OK",224.551,81.4104,-1.46376,4.80578,{"v":1.54e-06,"d":"1.54E-06"},0.000162923,"yes","GO:0005886 GO:0005509 GO:0009612 GO:0019722","AT2G41090.1","Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 24843 Blast hits to 18222 proteins in 1715 species: Archae - 1; Bacteria - 127; Metazoa - 10608; Fungi - 5338; Plants - 5376; Viruses - 2; Other Eukaryotes - 3391 (source: NCBI BLink).","protein_coding"]
["AT2G41100","Chr2:17137828-17139612","cs","ls","OK",79.5605,11.3053,-2.81505,6.89405,{"v":5.42e-12,"d":"5.42E-12"},{"v":3.71e-09,"d":"3.71E-09"},"yes","GO:0010363 GO:0019722 GO:0006612 GO:0009611 GO:0005739 GO:0005774 GO:0010200 GO:0006944 GO:0005515 GO:0009266 GO:0009646 GO:0009652 GO:0043069 GO:0009506 GO:0005509","AT2G41100.1","encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.","protein_coding","TOUCH 3 (TCH3)","TOUCH 3 (TCH3)"]
["AT2G41250","Chr2:17200658-17202618","cs","ls","OK",39.5742,11.1437,-1.82834,4.52628,{"v":6e-06,"d":"6.00E-06"},0.000539217,"yes","GO:0048573 GO:0046685 GO:0008152 GO:0008967","AT2G41250.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G14310.1); Has 5345 Blast hits to 5345 proteins in 1611 species: Archae - 258; Bacteria - 4323; Metazoa - 249; Fungi - 67; Plants - 142; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).","protein_coding"]
["AT2G42170","Chr2:17577713-17580392","cs","ls","OK",9.90701,0.855878,-3.53297,4.79969,{"v":1.59e-06,"d":"1.59E-06"},0.000166904,"yes","GO:0005737 GO:0005200 GO:0008150 GO:0015629 GO:0005524","AT2G42170.1","Actin family protein; FUNCTIONS IN: structural constituent of cytoskeleton, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: actin cytoskeleton; EXPRESSED IN: vascular bundle; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 13233 Blast hits to 12851 proteins in 2620 species: Archae - 6; Bacteria - 13; Metazoa - 5650; Fungi - 3392; Plants - 1602; Viruses - 2; Other Eukaryotes - 2568 (source: NCBI BLink).","protein_coding"]
["AT2G42485","Chr2:17690530-17691018","cs","ls","OK",24.1486,0,"-1.79769e+308","-1.79769e+308",{"v":3.32e-05,"d":"3.32E-05"},0.00211505,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G42485.1","Unknown gene","other_rna"]
["AT2G42530","Chr2:17709035-17709945","cs","ls","OK",77.8484,188.208,1.27359,-3.86692,0.000110218,0.00577295,"yes","GO:0009941 GO:0010150 GO:0009570 GO:0050832 GO:0009409 GO:0042631","AT2G42530.1","cold regulated 15b (COR15B); INVOLVED IN: response to cold, defense response to fungus; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold-regulated 15a (TAIR:AT2G42540.2); Has 194 Blast hits to 148 proteins in 43 species: Archae - 0; Bacteria - 18; Metazoa - 5; Fungi - 6; Plants - 155; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).","protein_coding","COLD REGULATED 15B (COR15B)","COLD REGULATED 15B (COR15B)"]
["AT2G42540","Chr2:17711031-17712330","cs","ls","OK",46.2935,276.376,2.57775,-7.09226,{"v":1.32e-12,"d":"1.32E-12"},{"v":9.7e-10,"d":"9.70E-10"},"yes","GO:0009941 GO:0010310 GO:0042538 GO:0010363 GO:0006612 GO:0010150 GO:0009570 GO:0009617 GO:0000165 GO:0006355 GO:0050821 GO:0031348 GO:0009867 GO:0003674 GO:0009862 GO:0009414 GO:0050826 GO:0009737 GO:0009631 GO:0035304 GO:0010017","AT2G42540.2","A cold-regulated gene whose product is targeted to the chloroplast. Cor15am protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. Late Embryogenesis abundant protein (LEA).","protein_coding","COLD-REGULATED 15A (COR15A)","(COR15)"]
["AT2G43100","Chr2:17920659-17921689","cs","ls","OK",101.02,217.402,1.10573,-3.68499,0.000228715,0.0102488,"yes","GO:0019761 GO:0009316 GO:0009684 GO:0019344 GO:0009098 GO:0003861 GO:0009507","AT2G43100.1","isopropylmalate isomerase 2 (IPMI2); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8735 Blast hits to 8734 proteins in 2248 species: Archae - 359; Bacteria - 5628; Metazoa - 12; Fungi - 337; Plants - 71; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).","protein_coding","ISOPROPYLMALATE ISOMERASE 2 (IPMI2)","(ATLEUD1)"]
["AT2G45570","Chr2:18779792-18781958","cs","ls","OK",0.124575,2.3171,4.21723,-3.91475,{"v":9.05e-05,"d":"9.05E-05"},0.0049489,"yes","GO:0019825 GO:0020037 GO:0016705 GO:0016036 GO:0005576 GO:0042631 GO:0019375 GO:0055114 GO:0009055","AT2G45570.1","member of CYP76C","protein_coding","\"CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 2\" (CYP76C2)","\"CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 2\" (CYP76C2)"]
["AT2G45830","Chr2:18866060-18868542","cs","ls","OK",1.07469,0.046586,-4.52788,3.19311,0.00140749,0.0406697,"yes","GO:0008150 GO:0005634 GO:0005576 GO:0003674","AT2G45830.1","downstream target of AGL15 2 (DTA2); CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding","DOWNSTREAM TARGET OF AGL15 2 (DTA2)","DOWNSTREAM TARGET OF AGL15 2 (DTA2)"]
["AT2G45920","Chr2:18899083-18901303","cs","ls","OK",3.58387,0.41579,-3.10759,3.7164,0.000202084,0.00926458,"yes","GO:0016567 GO:0005634 GO:0004842 GO:0000151","AT2G45920.1","U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G46400","Chr2:19043413-19044826","cs","ls","OK",12.8923,3.37692,-1.93273,3.62171,0.000292658,0.012244,"yes","GO:0043565 GO:0010200 GO:0005730 GO:0003700 GO:0009627 GO:0006355 GO:0009697","AT2G46400.1","member of WRKY Transcription Factor; Group III","protein_coding","WRKY DNA-BINDING PROTEIN 46 (WRKY46)","WRKY DNA-BINDING PROTEIN 46 (WRKY46)"]
["AT2G46440","Chr2:19061860-19064881","cs","ls","OK",7.23488,1.21626,-2.57252,4.44532,{"v":8.78e-06,"d":"8.78E-06"},0.000728921,"yes","GO:0030551 GO:0005261 GO:0009620 GO:0006811 GO:0005516 GO:0005886 GO:0055085","AT2G46440.1","Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.","protein_coding","CYCLIC NUCLEOTIDE-GATED CHANNELS (CNGC11)","CYCLIC NUCLEOTIDE-GATED CHANNELS (ATCNGC11)"]
["AT2G46450","Chr2:19065715-19069569","cs","ls","OK",10.6862,3.53585,-1.59563,3.30885,0.000936791,0.0301398,"yes","GO:0030551 GO:0005261 GO:0009620 GO:0006811 GO:0005886 GO:0055085","AT2G46450.1","Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.","protein_coding","CYCLIC NUCLEOTIDE-GATED CHANNEL 12 (CNGC12)","CYCLIC NUCLEOTIDE-GATED CHANNEL 12 (CNGC12)"]
["AT2G47670","Chr2:19543990-19544806","cs","ls","OK",0.493257,5.57313,3.49808,-3.30692,0.000943265,0.0302705,"yes","GO:0010214 GO:0046910","AT2G47670.1","Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT3G62820.1); Has 822 Blast hits to 815 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 822; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G47770","Chr2:19568463-19569507","cs","ls","OK",0.143844,2.27209,3.98144,-3.28645,0.00101457,0.0319687,"yes","GO:0005795 GO:0009737 GO:0005783 GO:0020037 GO:0016021 GO:0005739 GO:0006778 GO:0009651","AT2G47770.1","Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks. It is degraded through the autophagy pathway.","protein_coding","TSPO(OUTER MEMBRANE TRYPTOPHAN-RICH SENSORY PROTEIN)-RELATED (TSPO)","TSPO(OUTER MEMBRANE TRYPTOPHAN-RICH SENSORY PROTEIN)-RELATED (ATTSPO)"]
["AT3G01290","Chr3:88053-89422","cs","ls","OK",40.4159,15.3715,-1.39466,3.6926,0.000221973,0.0100145,"yes","GO:0010167 GO:0070838 GO:0010363 GO:0030968 GO:0006499 GO:0006612 GO:0005739 GO:0005774 GO:0050832 GO:0006944 GO:0030003 GO:0043069 GO:0009506 GO:0015706","AT3G01290.1","SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 7523 Blast hits to 7522 proteins in 1968 species: Archae - 210; Bacteria - 4831; Metazoa - 573; Fungi - 279; Plants - 280; Viruses - 3; Other Eukaryotes - 1347 (source: NCBI BLink).","protein_coding","HYPERSENSITIVE INDUCED REACTION 2 (HIR2)","(AtHIR2)"]
["AT3G01313","Chr3:104686-104769","cs","ls","OK",2399.27,0,"-1.79769e+308","-1.79769e+308",0.000505102,0.0186243,"yes","GO:0000154 GO:0003674 GO:0005732","AT3G01313.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT3G02380","Chr3:487235-488693","cs","ls","OK",13.0887,4.06094,-1.68844,3.32835,0.000873615,0.0287597,"yes","GO:0009658 GO:0003700 GO:0005634 GO:0008270 GO:0009909","AT3G02380.1","homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins","protein_coding","CONSTANS-LIKE 2 (COL2)","CONSTANS-LIKE 2 (ATCOL2)"]
["AT3G03480","Chr3:828295-829896","cs","ls","OK",0.0948375,1.57347,4.05235,-3.35385,0.000796946,0.0270893,"yes","GO:0005737 GO:0010327 GO:0010597","AT3G03480.1","acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (CHAT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G17540.1); Has 2522 Blast hits to 2511 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 2476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding","ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE (CHAT)","ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE (CHAT)"]
["AT3G03520","Chr3:837876-840624","cs","ls","OK",5.82425,1.5408,-1.9184,3.14761,0.00164613,0.0457025,"yes","GO:0005773 GO:0016036 GO:0006796 GO:0009506 GO:0016788","AT3G03520.1","Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses. Role in lipid synthesis.","protein_coding","NON-SPECIFIC PHOSPHOLIPASE C3 (NPC3)","NON-SPECIFIC PHOSPHOLIPASE C3 (NPC3)"]
["AT3G03920","Chr3:1006841-1010480","cs","ls","OK",114.046,243.28,1.093,-3.55993,0.000370953,0.0147571,"yes","GO:0009535 GO:0005730 GO:0031120 GO:0009982 GO:0034968 GO:0006364 GO:0001510 GO:0030515 GO:0009909 GO:0042991","AT3G03920.1","H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity, RNA binding; LOCATED IN: chloroplast thylakoid membrane, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote (InterPro:IPR021154), H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (TAIR:AT5G18180.1); Has 27180 Blast hits to 8695 proteins in 812 species: Archae - 17; Bacteria - 4971; Metazoa - 11125; Fungi - 2086; Plants - 5744; Viruses - 428; Other Eukaryotes - 2809 (source: NCBI BLink).","protein_coding"]
["AT3G04210","Chr3:1105962-1108069","cs","ls","OK",77.9489,6.95484,-3.48644,9.69705,0,0,"yes","GO:0005737 GO:0043531 GO:0031347 GO:0009627 GO:0007165","AT3G04210.1","Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 7287 Blast hits to 7131 proteins in 234 species: Archae - 2; Bacteria - 61; Metazoa - 8; Fungi - 0; Plants - 7211; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).","protein_coding"]
["AT3G04650","Chr3:1261983-1264622","cs","ls","OK",25.3999,54.1801,1.09294,-3.44353,0.00057418,0.0207237,"yes","GO:0005739 GO:0009507","AT3G04650.1","FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G56000.1); Has 902 Blast hits to 899 proteins in 231 species: Archae - 14; Bacteria - 382; Metazoa - 7; Fungi - 2; Plants - 133; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).","protein_coding"]
["AT3G07215","Chr3:2296035-2297789","cs","ls","OK",5.10924,0.451132,-3.50149,3.98618,{"v":6.71e-05,"d":"6.71E-05"},0.00392032,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G07215.1","Unknown gene","other_rna"]
["AT3G07390","Chr3:2365300-2366496","cs","ls","OK",22.9221,48.7373,1.08829,-3.18437,0.00145067,0.0416146,"yes","GO:0009733 GO:0005201 GO:0046658 GO:0005576 GO:0030198 GO:0006007 GO:0010102","AT3G07390.1","isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.","protein_coding","AUXIN-INDUCED IN ROOT CULTURES 12 (AIR12)","AUXIN-INDUCED IN ROOT CULTURES 12 (AIR12)"]
["AT3G09390","Chr3:2889485-2890229","cs","ls","OK",253.924,686.394,1.43464,-4.80829,{"v":1.52e-06,"d":"1.52E-06"},0.000162463,"yes","GO:0005507 GO:0006878","AT3G09390.1","metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage","protein_coding","METALLOTHIONEIN 2A (MT2A)","METALLOTHIONEIN 2A (MT2A)"]
["AT3G09920","Chr3:3038779-3044919","cs","ls","OK",10.058,4.08236,-1.30087,3.17463,0.0015003,0.0427907,"yes","GO:0016308 GO:0006520 GO:0005975 GO:0005634 GO:0016020 GO:0046488 GO:0005515 GO:0005829 GO:0005524","AT3G09920.1","phosphatidyl inositol monophosphate 5 kinase (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process, cellular amino acid metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 25974 Blast hits to 7709 proteins in 605 species: Archae - 0; Bacteria - 3692; Metazoa - 3999; Fungi - 475; Plants - 1866; Viruses - 0; Other Eukaryotes - 15942 (source: NCBI BLink).","protein_coding","PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE (PIP5K9)","PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE (PIP5K9)"]
["AT3G10200","Chr3:3157607-3160188","cs","ls","OK",2.32166,0.258366,-3.16767,3.4784,0.000504415,0.0186243,"yes","GO:0005794 GO:0008168","AT3G10200.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G04060.1); Has 1192 Blast hits to 1180 proteins in 187 species: Archae - 1; Bacteria - 301; Metazoa - 2; Fungi - 2; Plants - 876; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).","protein_coding"]
["AT3G10410","Chr3:3235290-3238113","cs","ls","OK",33.1319,65.3117,0.979122,-3.16972,0.00152586,0.0433952,"yes","GO:0005773 GO:0006508 GO:0005829 GO:0005576 GO:0004185","AT3G10410.1","SERINE CARBOXYPEPTIDASE-LIKE 49 (SCPL49); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 48 (TAIR:AT3G45010.1); Has 3569 Blast hits to 3439 proteins in 342 species: Archae - 0; Bacteria - 147; Metazoa - 678; Fungi - 883; Plants - 1454; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).","protein_coding","SERINE CARBOXYPEPTIDASE-LIKE 49 (scpl49)","CARBOXYPEPTIDASE Y (CPY)"]
["AT3G11010","Chr3:3447567-3453683","cs","ls","OK",2.44905,0.0853982,-4.84187,3.81974,0.000133594,0.00666326,"yes","GO:0005575 GO:0006952 GO:0016301 GO:0007165","AT3G11010.1","receptor like protein 34 (RLP34); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 53 (TAIR:AT5G27060.1); Has 142392 Blast hits to 33789 proteins in 1239 species: Archae - 73; Bacteria - 11207; Metazoa - 34063; Fungi - 1634; Plants - 83633; Viruses - 34; Other Eukaryotes - 11748 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 34 (RLP34)","RECEPTOR LIKE PROTEIN 34 (RLP34)"]
["AT3G11480","Chr3:3614436-3617314","cs","ls","OK",0.0261119,0.989067,5.24329,-3.20282,0.00136089,0.0395781,"yes","GO:0009753 GO:0008757 GO:0005634 GO:0009611 GO:0006952 GO:0009695 GO:0009620","AT3G11480.1","The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.","protein_coding","(BSMT1)","(ATBSMT1)"]
["AT3G14210","Chr3:4729822-4731803","cs","ls","OK",297.839,52.6512,-2.49999,8.32165,0,0,"yes","GO:0009941 GO:0048046 GO:0022626 GO:0005773 GO:0009625 GO:0005634 GO:0019762 GO:0005777 GO:0004091 GO:0019761 GO:0019288 GO:0006098 GO:0042742 GO:0009409 GO:0015979 GO:0009506 GO:0019252","AT3G14210.1","A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni.","protein_coding","EPITHIOSPECIFIER MODIFIER 1 (ESM1)","EPITHIOSPECIFIER MODIFIER 1 (ESM1)"]
["AT3G14440","Chr3:4831287-4833599","cs","ls","OK",1.66695,6.37038,1.93417,-3.4592,0.000541783,0.0197701,"yes","GO:0009535 GO:0009688 GO:0042538 GO:0009570 GO:0045549 GO:0009414 GO:0009409 GO:0009737","AT3G14440.1","Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.","protein_coding","NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3 (NCED3)","NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3 (NCED3)"]
["AT3G14650","Chr3:4922130-4924694","cs","ls","OK",48.9521,13.3159,-1.87822,5.72799,{"v":1.02e-08,"d":"1.02E-08"},{"v":2.2e-06,"d":"2.20E-06"},"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G14650.1","putative cytochrome P450","protein_coding","\"CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 11\" (CYP72A11)","\"CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 11\" (CYP72A11)"]
["AT3G14900","Chr3:5013290-5015292","cs","ls","OK",17.2268,56.0112,1.70106,-5.18508,{"v":2.16e-07,"d":"2.16E-07"},{"v":3.06e-05,"d":"3.06E-05"},"yes","GO:0009790 GO:0003674 GO:0009507","AT3G14900.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink).","protein_coding","EMBRYO DEFECTIVE 3120 (EMB3120)","EMBRYO DEFECTIVE 3120 (EMB3120)"]
["AT3G15750","Chr3:5335077-5336476","cs","ls","OK",3.40336,17.5817,2.36904,-4.09247,{"v":4.27e-05,"d":"4.27E-05"},0.0026231,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G15750.1","Essential protein Yae1, N-terminal; CONTAINS InterPro DOMAIN/s: Essential protein Yae1, N-terminal (InterPro:IPR019191); BEST Arabidopsis thaliana protein match is: Essential protein Yae1, N-terminal (TAIR:AT1G34570.1); Has 133 Blast hits to 133 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 20; Plants - 55; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).","protein_coding"]
["AT3G15950","Chr3:5397568-5402652","cs","ls","OK",63.3281,17.8645,-1.82575,5.74272,{"v":9.32e-09,"d":"9.32E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0080119 GO:0010168 GO:0005777 GO:0005576 GO:0009651 GO:0009506","AT3G15950.1","Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.","protein_coding","(NAI2)","(NAI2)"]
["AT3G16420","Chr3:5579385-5580953","cs","ls","OK",109.007,42.6456,-1.35395,4.20971,{"v":2.56e-05,"d":"2.56E-05"},0.00170908,"yes","GO:0051336 GO:0006457 GO:0005829 GO:0005634 GO:0005576 GO:0005515 GO:0005507 GO:0030234 GO:0009506","AT3G16420.1","The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.","protein_coding","PYK10-BINDING PROTEIN 1 (PBP1)","JACALIN-RELATED LECTIN 30 (JAL30)"]
["AT3G16520","Chr3:5618439-5620873","cs","ls","OK",105.93,31.032,-1.77128,5.73464,{"v":9.77e-09,"d":"9.77E-09"},{"v":2.16e-06,"d":"2.16E-06"},"yes","GO:0080044 GO:0005634 GO:0080043 GO:0080046 GO:0008152 GO:0080045 GO:0005829","AT3G16520.3","UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).","protein_coding","UDP-GLUCOSYL TRANSFERASE 88A1 (UGT88A1)","UDP-GLUCOSYL TRANSFERASE 88A1 (UGT88A1)"]
["AT3G16670","Chr3:5681418-5682331","cs","ls","OK",55.8963,12.6586,-2.14263,5.03245,{"v":4.84e-07,"d":"4.84E-07"},{"v":6.12e-05,"d":"6.12E-05"},"yes","GO:0005576 GO:0003674 GO:0006979","AT3G16670.1","Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G16660.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT3G16750","Chr3:5701010-5702541","cs","ls","OK",7.88271,0,"-1.79769e+308","-1.79769e+308",{"v":5.85e-06,"d":"5.85E-06"},0.000528988,"yes","GO:0003674 GO:0005576 GO:0008150","AT3G16750.1","unknown protein; Has 4708 Blast hits to 1416 proteins in 195 species: Archae - 36; Bacteria - 1240; Metazoa - 1232; Fungi - 406; Plants - 191; Viruses - 23; Other Eukaryotes - 1580 (source: NCBI BLink).","protein_coding"]
["AT3G16770","Chr3:5705661-5707023","cs","ls","OK",35.9759,5.15584,-2.80275,5.72767,{"v":1.02e-08,"d":"1.02E-08"},{"v":2.2e-06,"d":"2.20E-06"},"yes","GO:0005737 GO:0005886 GO:0009735 GO:0009753 GO:0003700 GO:0005634 GO:0010286 GO:0045893 GO:0005515 GO:0009873 GO:0008219 GO:0051707","AT3G16770.1","Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.","protein_coding","ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN (EBP)","ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN (ATEBP)"]
["AT3G17510","Chr3:5988990-5992912","cs","ls","OK",29.8155,12.5078,-1.25324,3.4777,0.000505733,0.0186243,"yes","GO:0006468 GO:0009737 GO:0019722 GO:0004674 GO:0004713 GO:0005515 GO:0005886 GO:0009651 GO:0005524 GO:0010118","AT3G17510.1","Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.","protein_coding","CBL-INTERACTING PROTEIN KINASE 1 (CIPK1)","SNF1-RELATED PROTEIN KINASE 3.16 (SnRK3.16)"]
["AT3G18270","Chr3:6261904-6264309","cs","ls","OK",12.6859,2.9692,-2.09508,4.13978,{"v":3.48e-05,"d":"3.48E-05"},0.00219079,"yes","GO:0003824 GO:0008152 GO:0005739 GO:0009507","AT3G18270.1","a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model.","protein_coding","\"CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 5 PSEUDOGENE\" (CYP77A5P)","\"CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 5 PSEUDOGENE\" (CYP77A5P)"]
["AT3G18520","Chr3:6361175-6365615","cs","ls","OK",14.1978,5.76388,-1.30056,3.19494,0.0013986,0.0404719,"yes","GO:0048573 GO:0004407 GO:0005634 GO:0016575 GO:0008270 GO:0009294","AT3G18520.2","Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.","protein_coding","HISTONE DEACETYLASE 15 (HDA15)","(HDA15)"]
["AT3G18535","Chr3:6373534-6377220","cs","ls","OK",5.93747,18.051,1.60416,-3.44799,0.000564779,0.0204588,"yes","GO:0005634 GO:0006464 GO:0004835","AT3G18535.1","tubulin-tyrosine ligases; FUNCTIONS IN: tubulin-tyrosine ligase activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344).","protein_coding"]
["AT3G19515","Chr3:6766667-6771169","cs","ls","OK",15.5993,2.46651,-2.66094,5.85271,{"v":4.84e-09,"d":"4.84E-09"},{"v":1.2e-06,"d":"1.20E-06"},"yes","GO:0000394 GO:0010050 GO:0009616 GO:0003674 GO:0009086 GO:0005634","AT3G19515.2","CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23935.1); Has 546 Blast hits to 394 proteins in 84 species: Archae - 0; Bacteria - 3; Metazoa - 210; Fungi - 15; Plants - 143; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).","protein_coding"]
["AT3G21720","Chr3:7652486-7656011","cs","ls","OK",0.290761,4.36161,3.90695,-4.45472,{"v":8.4e-06,"d":"8.40E-06"},0.000706585,"yes","GO:0005737 GO:0004451 GO:0010162 GO:0019752","AT3G21720.1","Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).","protein_coding","ISOCITRATE LYASE (ICL)","ISOCITRATE LYASE (ICL)"]
["AT3G21805","Chr3:7682361-7682452","cs","ls","OK",11241.6,855.161,-3.7165,6.08011,{"v":1.2e-09,"d":"1.20E-09"},{"v":3.46e-07,"d":"3.46E-07"},"yes","GO:0000154 GO:0003674 GO:0005732","AT3G21805.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT3G22231","Chr3:7845822-7846605","cs","ls","OK",344.574,11.5078,-4.90413,9.5134,0,0,"yes","GO:0009620 GO:0005634 GO:0009617 GO:0003674 GO:0005886","AT3G22231.1","Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.","protein_coding","PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1)","PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1)"]
["AT3G22235","Chr3:7854418-7855814","cs","ls","OK",389.817,4.43055,-6.45917,6.73828,{"v":1.6e-11,"d":"1.60E-11"},{"v":9.36e-09,"d":"9.36E-09"},"yes","GO:0008150 GO:0005634 GO:0003674","AT3G22235.1","BEST Arabidopsis thaliana protein match is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1); Has 122 Blast hits to 122 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G22240","Chr3:7863615-7864819","cs","ls","OK",163.728,0.943012,-7.4398,8.03827,{"v":8.88e-16,"d":"8.88E-16"},{"v":9.8e-13,"d":"9.80E-13"},"yes","GO:0008150 GO:0005634 GO:0003674","AT3G22240.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G23450","Chr3:8410432-8412193","cs","ls","OK",38.5577,82.2845,1.0936,-3.31046,0.000931412,0.0300642,"yes","GO:0003674 GO:0008150","AT3G23450.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; Has 694543 Blast hits to 47111 proteins in 2535 species: Archae - 1794; Bacteria - 163056; Metazoa - 258989; Fungi - 49151; Plants - 70496; Viruses - 8919; Other Eukaryotes - 142138 (source: NCBI BLink).","protein_coding"]
["AT3G23550","Chr3:8448272-8450697","cs","ls","OK",1.33483,0.118507,-3.49361,3.13065,0.00174418,0.0475599,"yes","GO:0006855 GO:0005886 GO:0009723 GO:0015297 GO:0015238","AT3G23550.1","MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G23560.1); Has 11241 Blast hits to 11165 proteins in 2062 species: Archae - 263; Bacteria - 7905; Metazoa - 148; Fungi - 330; Plants - 1322; Viruses - 0; Other Eukaryotes - 1273 (source: NCBI BLink).","protein_coding"]
["AT3G23590","Chr3:8467448-8473627","cs","ls","OK",6.91498,2.94976,-1.22913,3.1207,0.00180423,0.0488619,"yes","GO:0048765 GO:0045010 GO:0010090 GO:0071555 GO:0003674 GO:0007155 GO:0016592","AT3G23590.1","Encodes a protein shown to physically associate with the conserved transcriptional coregulatory complex, Mediator, and is involved in the regulation of phenylpropanoid homeostasis.","protein_coding","REF4-RELATED 1 (RFR1)","(MED33A)"]
["AT3G24515","Chr3:8934471-8936279","cs","ls","OK",9.07992,1.37255,-2.72582,4.09874,{"v":4.15e-05,"d":"4.15E-05"},0.00256889,"yes","GO:0004842","AT3G24515.1","ubiquitin-conjugating enzyme 37 (UBC37); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 11 (TAIR:AT3G08690.2); Has 10163 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4605; Fungi - 2137; Plants - 1818; Viruses - 27; Other Eukaryotes - 1574 (source: NCBI BLink).","protein_coding","UBIQUITIN-CONJUGATING ENZYME 37 (UBC37)","UBIQUITIN-CONJUGATING ENZYME 37 (UBC37)"]
["AT3G24982","Chr3:9105999-9108937","cs","ls","OK",1.21325,0.058172,-4.38241,4.07606,{"v":4.58e-05,"d":"4.58E-05"},0.00277219,"yes","GO:0007165 GO:0009507","AT3G24982.1","receptor like protein 40 (RLP40); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 42 (TAIR:AT3G25020.1); Has 99455 Blast hits to 28572 proteins in 1045 species: Archae - 41; Bacteria - 5981; Metazoa - 21246; Fungi - 1128; Plants - 63748; Viruses - 31; Other Eukaryotes - 7280 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 40 (RLP40)","RECEPTOR LIKE PROTEIN 40 (RLP40)"]
["AT3G25010","Chr3:9110102-9112748","cs","ls","OK",1.95218,0.271154,-2.8479,3.54502,0.000392584,0.0153712,"yes","GO:0016301 GO:0007165 GO:0009627 GO:0034976","AT3G25010.1","receptor like protein 41 (RLP41); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 100338 Blast hits to 28106 proteins in 1068 species: Archae - 55; Bacteria - 6779; Metazoa - 21043; Fungi - 1251; Plants - 63659; Viruses - 32; Other Eukaryotes - 7519 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 41 (RLP41)","RECEPTOR LIKE PROTEIN 41 (RLP41)"]
["AT3G25020","Chr3:9116867-9119540","cs","ls","OK",1.16128,0.0942719,-3.62275,3.58515,0.000336889,0.0137322,"yes","GO:0006952 GO:0005576 GO:0007165","AT3G25020.1","receptor like protein 42 (RLP42); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 101819 Blast hits to 28851 proteins in 1081 species: Archae - 42; Bacteria - 7146; Metazoa - 22681; Fungi - 1243; Plants - 63183; Viruses - 32; Other Eukaryotes - 7492 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 42 (RLP42)","RECEPTOR LIKE PROTEIN 42 (RLP42)"]
["AT3G25600","Chr3:9307253-9307967","cs","ls","OK",15.6455,3.71943,-2.07259,3.22971,0.00123914,0.0370455,"yes","GO:0005794 GO:0010200 GO:0005509","AT3G25600.1","Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G18530.1); Has 23107 Blast hits to 15210 proteins in 1505 species: Archae - 1; Bacteria - 136; Metazoa - 8522; Fungi - 5826; Plants - 5264; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).","protein_coding"]
["AT3G25760","Chr3:9403882-9405250","cs","ls","OK",10.2766,36.3999,1.82457,-4.24046,{"v":2.23e-05,"d":"2.23E-05"},0.00154283,"yes","GO:0009535 GO:0046423 GO:0009941 GO:0018119 GO:0009695 GO:0009269","AT3G25760.1","encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway.","protein_coding","ALLENE OXIDE CYCLASE 1 (AOC1)","EARLY-RESPONSIVE TO DEHYDRATION 12 (ERD12)"]
["AT3G26080","Chr3:9528773-9530496","cs","ls","OK",27.1643,10.4321,-1.38068,3.32241,0.000892437,0.0291858,"yes","GO:0009535 GO:0008150 GO:0005198","AT3G26080.1","plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 376 Blast hits to 374 proteins in 78 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 0; Plants - 276; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","protein_coding"]
["AT3G26220","Chr3:9596076-9597833","cs","ls","OK",2.59276,0.332963,-2.96106,3.21276,0.00131468,0.0387207,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G26220.1","cytochrome P450 monooxygenase","protein_coding","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 3\" (CYP71B3)","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 3\" (CYP71B3)"]
["AT3G26230","Chr3:9598004-9599959","cs","ls","OK",2.60019,0.0824583,-4.97881,4.43381,{"v":9.26e-06,"d":"9.26E-06"},0.000749631,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G26230.1","putative cytochrome P450","protein_coding","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 24\" (CYP71B24)","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 24\" (CYP71B24)"]
["AT3G26290","Chr3:9632681-9634470","cs","ls","OK",35.2588,12.398,-1.50787,4.27267,{"v":1.93e-05,"d":"1.93E-05"},0.00140837,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G26290.1","putative cytochrome P450","protein_coding","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 26\" (CYP71B26)","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 26\" (CYP71B26)"]
["AT3G26612","Chr3:9781982-9783412","cs","ls","OK",5.1251,0.16208,-4.9828,4.44928,{"v":8.62e-06,"d":"8.62E-06"},0.000718637,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G26612.1","Unknown gene","other_rna"]
["AT3G26744","Chr3:9832688-9835247","cs","ls","OK",16.602,35.5395,1.09806,-3.24556,0.00117219,0.0353634,"yes","GO:0010162 GO:0003700 GO:0010182 GO:0005634 GO:0050826 GO:0009410 GO:0010228 GO:0010440 GO:0016567 GO:0009793 GO:0009845 GO:0045893 GO:0010388 GO:0019915 GO:0016571 GO:0009933 GO:0016579 GO:0009909 GO:0009640","AT3G26744.1","Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.","protein_coding","INDUCER OF CBF EXPRESSION 1 (ICE1)","SCREAM (SCRM)"]
["AT3G27250","Chr3:10061544-10062731","cs","ls","OK",0.363427,4.05773,3.48093,-3.60822,0.000308302,0.0127237,"yes","GO:0008150 GO:0005634 GO:0003674","AT3G27250.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G27610","Chr3:10225524-10228192","cs","ls","OK",6.61543,0.934624,-2.82338,3.64889,0.00026338,0.0115162,"yes","GO:0008150 GO:0003674 GO:0009507","AT3G27610.2","Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT2G01220.2).","protein_coding"]
["AT3G27990","Chr3:10392674-10398175","cs","ls","OK",5.56863,0.233748,-4.5743,5.03396,{"v":4.8e-07,"d":"4.80E-07"},{"v":6.11e-05,"d":"6.11E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT3G27990.1","Unknown gene","other_rna"]
["AT3G28200","Chr3:10518069-10519166","cs","ls","OK",56.6568,20.508,-1.46606,4.22664,{"v":2.37e-05,"d":"2.37E-05"},0.00160712,"yes","GO:0016126 GO:0020037 GO:0005829 GO:0004601 GO:0005576 GO:0005515 GO:0009505 GO:0006979 GO:0055114","AT3G28200.1","Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G40150.1); Has 4870 Blast hits to 4847 proteins in 335 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 481; Plants - 4306; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).","protein_coding"]
["AT3G28220","Chr3:10524403-10526728","cs","ls","OK",19.3988,68.3348,1.81665,-5.50262,{"v":3.74e-08,"d":"3.74E-08"},{"v":6.57e-06,"d":"6.57E-06"},"yes","GO:0005773 GO:0009941 GO:0003674 GO:0031540","AT3G28220.1","TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuole, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G58270.1); Has 1242 Blast hits to 999 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).","protein_coding"]
["AT3G28290","Chr3:10547503-10549367","cs","ls","OK",4.81799,0,"-1.79769e+308","-1.79769e+308",{"v":7.24e-05,"d":"7.24E-05"},0.00415351,"yes","GO:0009507 GO:0005886","AT3G28290.1","Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.","protein_coding","(AT14A)","(AT14A)"]
["AT3G28300","Chr3:10565736-10567600","cs","ls","OK",4.81799,0,"-1.79769e+308","-1.79769e+308",{"v":7.24e-05,"d":"7.24E-05"},0.00415351,"yes","GO:0008305 GO:0008360 GO:0016337 GO:0009507","AT3G28300.1","Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.","protein_coding","(AT14A)","(AT14A)"]
["AT3G28340","Chr3:10588946-10590552","cs","ls","OK",5.30042,0.632679,-3.06656,4.25153,{"v":2.12e-05,"d":"2.12E-05"},0.00148832,"yes","GO:0005794 GO:0030968 GO:0009738 GO:0016051 GO:0047262 GO:0006979","AT3G28340.1","Encodes a protein with putative galacturonosyltransferase activity.","protein_coding","GALACTURONOSYLTRANSFERASE-LIKE 10 (GATL10)","GALACTINOL SYNTHASE 8 (GolS8)"]
["AT3G28510","Chr3:10685523-10687364","cs","ls","OK",2.09654,0,"-1.79769e+308","-1.79769e+308",0.00169151,0.0466576,"yes","GO:0010310 GO:0005783 GO:0009862 GO:0016887 GO:0005886 GO:0001666 GO:0005524","AT3G28510.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28540.1); Has 37676 Blast hits to 28869 proteins in 2974 species: Archae - 1302; Bacteria - 8814; Metazoa - 8958; Fungi - 4310; Plants - 3042; Viruses - 177; Other Eukaryotes - 11073 (source: NCBI BLink).","protein_coding"]
["AT3G28950","Chr3:10976107-10977492","cs","ls","OK",29.1121,9.74107,-1.57947,3.69016,0.000224112,0.0100881,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G28950.1","AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT3G28940.1); Has 301 Blast hits to 301 proteins in 90 species: Archae - 4; Bacteria - 63; Metazoa - 0; Fungi - 82; Plants - 103; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","protein_coding"]
["AT3G29375","Chr3:11280150-11281894","cs","ls","OK",37.6194,8.35285,-2.17114,5.14583,{"v":2.66e-07,"d":"2.66E-07"},{"v":3.67e-05,"d":"3.67E-05"},"yes","GO:0005737 GO:0008150 GO:0005634 GO:0003674","AT3G29375.1","XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G80790.1); Has 4410 Blast hits to 869 proteins in 187 species: Archae - 2; Bacteria - 84; Metazoa - 239; Fungi - 227; Plants - 231; Viruses - 48; Other Eukaryotes - 3579 (source: NCBI BLink).","protein_coding"]
["AT3G30775","Chr3:12448635-12451248","cs","ls","OK",19.2816,2.20953,-3.12541,6.18688,{"v":6.14e-10,"d":"6.14E-10"},{"v":1.85e-07,"d":"1.85E-07"},"yes","GO:0006562 GO:0004657 GO:0005739 GO:0006537 GO:0042742 GO:0009414 GO:0006979 GO:0055114","AT3G30775.1","Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.","protein_coding","EARLY RESPONSIVE TO DEHYDRATION 5 (ERD5)","EARLY RESPONSIVE TO DEHYDRATION 5 (ERD5)"]
["AT3G43540","Chr3:15430688-15433187","cs","ls","OK",33.1605,15.2779,-1.11802,3.1344,0.00172204,0.0472613,"yes","GO:0008150 GO:0005576 GO:0003674 GO:0009507","AT3G43540.1","Protein of unknown function (DUF1350); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT5G47860.1); Has 426 Blast hits to 356 proteins in 87 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).","protein_coding"]
["AT3G43740","Chr3:15644053-15645662","cs","ls","OK",39.3349,0,"-1.79769e+308","-1.79769e+308",{"v":1.84e-09,"d":"1.84E-09"},{"v":5.21e-07,"d":"5.21E-07"},"yes","GO:0007165 GO:0005886","AT3G43740.2","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G21090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT3G43980","Chr3:15778401-15779311","cs","ls","OK",134.881,623.545,2.2088,-6.71051,{"v":1.94e-11,"d":"1.94E-11"},{"v":1.1e-08,"d":"1.10E-08"},"yes","GO:0003735 GO:0022627 GO:0006412","AT3G43980.1","Ribosomal protein S14p/S29e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: Ribosomal protein S14p/S29e family protein (TAIR:AT4G33865.1); Has 986 Blast hits to 986 proteins in 355 species: Archae - 225; Bacteria - 0; Metazoa - 331; Fungi - 136; Plants - 156; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).","protein_coding"]
["AT3G44260","Chr3:15952044-15953084","cs","ls","OK",30.8416,11.5992,-1.41085,3.49558,0.00047303,0.017886,"yes","GO:0008408 GO:0004540 GO:0000289 GO:0010228 GO:0005634 GO:0009873 GO:0009611 GO:0009612 GO:0009451 GO:0042742 GO:0003676 GO:0009693 GO:0002213 GO:0010200","AT3G44260.1","Encodes one of the homologs of the yeast CCR4-associated factor 1: AT3G44260 (CAF1a), AT5G22250 (CAF1b). Has mRNA deadenylation activity. Also plays a role in plant defense responses.","protein_coding","CCR4- ASSOCIATED FACTOR 1A (CAF1a)","CCR4- ASSOCIATED FACTOR 1A (CAF1a)"]
["AT3G44430","Chr3:16068256-16069750","cs","ls","OK",7.1555,0,"-1.79769e+308","-1.79769e+308",{"v":3.54e-06,"d":"3.54E-06"},0.000344218,"yes","GO:0008150 GO:0003674 GO:0005739","AT3G44430.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41660.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G44450","Chr3:16074095-16074678","cs","ls","OK",116.888,27.5445,-2.08529,5.2394,{"v":1.61e-07,"d":"1.61E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0005634 GO:0003674","AT3G44450.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G44480","Chr3:16090563-16096359","cs","ls","OK",12.2321,3.45212,-1.82512,5.0225,{"v":5.1e-07,"d":"5.10E-07"},{"v":6.33e-05,"d":"6.33E-05"},"yes","GO:0009817 GO:0005886 GO:0006499 GO:0000139 GO:0007165 GO:0043531 GO:0030275 GO:0002239 GO:0005789","AT3G44480.1","Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 1 (RPP1)","(cog1)"]
["AT3G44630","Chr3:16195954-16201225","cs","ls","OK",7.66947,2.87096,-1.41759,3.71255,0.000205181,0.00938489,"yes","GO:0005737 GO:0017111 GO:0006499 GO:0006952 GO:0007165 GO:0043531","AT3G44630.3","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 41236 Blast hits to 23630 proteins in 841 species: Archae - 26; Bacteria - 2523; Metazoa - 3794; Fungi - 289; Plants - 32905; Viruses - 4; Other Eukaryotes - 1695 (source: NCBI BLink).","protein_coding"]
["AT3G44670","Chr3:16216944-16221617","cs","ls","OK",12.7069,4.99541,-1.34694,3.52266,0.000427237,0.0164362,"yes","GO:0005737 GO:0017111 GO:0006499 GO:0042742 GO:0043531 GO:0007165","AT3G44670.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to bacterium, N-terminal protein myristoylation, defense response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 43058 Blast hits to 25503 proteins in 934 species: Archae - 40; Bacteria - 3496; Metazoa - 4195; Fungi - 278; Plants - 32050; Viruses - 26; Other Eukaryotes - 2973 (source: NCBI BLink).","protein_coding"]
["AT3G44713","Chr3:16260204-16262484","cs","ls","OK",1.50817,0.0255287,-5.88453,4.00631,{"v":6.17e-05,"d":"6.17E-05"},0.00364374,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G44713.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14800.1); Has 69 Blast hits to 64 proteins in 24 species: Archae - 2; Bacteria - 10; Metazoa - 4; Fungi - 4; Plants - 36; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).","protein_coding"]
["AT3G44740","Chr3:16295969-16297805","cs","ls","OK",8.21016,0,"-1.79769e+308","-1.79769e+308",{"v":8.29e-06,"d":"8.29E-06"},0.00070007,"yes","GO:0006426 GO:0005737 GO:0004820 GO:0005524 GO:0048481","AT3G44740.1","Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 3168 Blast hits to 2607 proteins in 995 species: Archae - 349; Bacteria - 1331; Metazoa - 339; Fungi - 293; Plants - 132; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).","protein_coding"]
["AT3G44798","Chr3:16342294-16343014","cs","ls","OK",10.014,0,"-1.79769e+308","-1.79769e+308",0.000103082,0.00550073,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G44798.1","other RNA","other_rna"]
["AT3G44860","Chr3:16379632-16381070","cs","ls","OK",7.86422,20.1714,1.35894,-3.32052,0.000898484,0.029287,"yes","GO:0009507 GO:0019010","AT3G44860.1","Encodes a farnesoic acid carboxyl-O-methyltransferase.","protein_coding","FARNESOIC ACID CARBOXYL-O-METHYLTRANSFERASE (FAMT)","FARNESOIC ACID CARBOXYL-O-METHYLTRANSFERASE (FAMT)"]
["AT3G44970","Chr3:16432442-16434848","cs","ls","OK",14.7453,5.23771,-1.49325,3.27046,0.00107373,0.0331898,"yes","GO:0004497 GO:0019825 GO:0020037 GO:0016705 GO:0055114 GO:0009055","AT3G44970.1","Cytochrome P450 superfamily protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, shoot, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 708, subfamily A, polypeptide 2 (TAIR:AT5G48000.5); Has 31585 Blast hits to 31508 proteins in 1695 species: Archae - 52; Bacteria - 6275; Metazoa - 10768; Fungi - 5445; Plants - 7650; Viruses - 6; Other Eukaryotes - 1389 (source: NCBI BLink).","protein_coding"]
["AT3G44990","Chr3:16446974-16448764","cs","ls","OK",45.3687,91.909,1.01851,-3.25817,0.00112133,0.0341403,"yes","GO:0042546 GO:0016998 GO:0005618 GO:0033946 GO:0048046 GO:0016762","AT3G44990.1","xyloglucan endo-transglycosylase","protein_coding","XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8 (XTR8)","XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8 (XTR8)"]
["AT3G45430","Chr3:16660758-16662783","cs","ls","OK",1.54899,0.0480394,-5.01096,4.09687,{"v":4.19e-05,"d":"4.19E-05"},0.00258174,"yes","GO:0004674 GO:0006468 GO:0004713 GO:0005524 GO:0005886","AT3G45430.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G60300.2); Has 112094 Blast hits to 110783 proteins in 4027 species: Archae - 87; Bacteria - 13033; Metazoa - 40575; Fungi - 9357; Plants - 32839; Viruses - 371; Other Eukaryotes - 15832 (source: NCBI BLink).","protein_coding"]
["AT3G45440","Chr3:16664874-16666884","cs","ls","OK",0.146807,4.31998,4.87903,-5.02367,{"v":5.07e-07,"d":"5.07E-07"},{"v":6.33e-05,"d":"6.33E-05"},"yes","GO:0004674 GO:0006468 GO:0030246 GO:0005524 GO:0005886","AT3G45440.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G60320.1); Has 111175 Blast hits to 109934 proteins in 4169 species: Archae - 90; Bacteria - 12913; Metazoa - 40130; Fungi - 9355; Plants - 32817; Viruses - 349; Other Eukaryotes - 15521 (source: NCBI BLink).","protein_coding"]
["AT3G45730","Chr3:16789979-16790582","cs","ls","OK",10.8739,1.19663,-3.18383,3.48829,0.000486124,0.0181876,"yes","GO:0008150 GO:0003674 GO:0005739","AT3G45730.1","unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G45860","Chr3:16863400-16866041","cs","ls","OK",2.6697,0,"-1.79769e+308","-1.79769e+308",0.000177636,0.0085175,"yes","GO:0006468 GO:0009751 GO:0012501 GO:0004674 GO:0005576 GO:0042742 GO:0005524","AT3G45860.1","Encodes a cysteine-rich receptor-like protein kinase. Involved in programmed cell death and defense response to pathogen.","protein_coding","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 4 (CRK4)","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 4 (CRK4)"]
["AT3G45930","Chr3:16883315-16883876","cs","ls","OK",156.924,317.1,1.01487,-3.28744,0.00101102,0.0319582,"yes","GO:0005634 GO:0003677 GO:0006334 GO:0000786","AT3G45930.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone H4 (InterPro:IPR001951), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink).","protein_coding"]
["AT3G46130","Chr3:16945363-16946461","cs","ls","OK",34.9149,9.84018,-1.82708,3.34326,0.000827988,0.0279056,"yes","GO:0003700 GO:0006355 GO:0005634 GO:0009751","AT3G46130.1","Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.","protein_coding","MYB DOMAIN PROTEIN 48 (MYB48)","MYB DOMAIN PROTEIN 111 (MYB111)"]
["AT3G46370","Chr3:17051954-17055514","cs","ls","OK",8.59435,0,"-1.79769e+308","-1.79769e+308",{"v":1.54e-08,"d":"1.54E-08"},{"v":3.06e-06,"d":"3.06E-06"},"yes","GO:0007169 GO:0006468 GO:0005886 GO:0005524 GO:0004674","AT3G46370.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46400.1); Has 158526 Blast hits to 120263 proteins in 4504 species: Archae - 95; Bacteria - 12978; Metazoa - 44044; Fungi - 9573; Plants - 73487; Viruses - 375; Other Eukaryotes - 17974 (source: NCBI BLink).","protein_coding"]
["AT3G46530","Chr3:17130366-17133338","cs","ls","OK",22.2106,2.34552,-3.24327,7.47698,{"v":7.59e-14,"d":"7.59E-14"},{"v":6.28e-11,"d":"6.28E-11"},"yes","GO:0005737 GO:0005634 GO:0009626 GO:0043531 GO:0005886 GO:0009814","AT3G46530.1","Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 13 (RPP13)","RECOGNITION OF PERONOSPORA PARASITICA 13 (RPP13)"]
["AT3G46600","Chr3:17157923-17159965","cs","ls","OK",33.9311,12.341,-1.45915,4.23205,{"v":2.32e-05,"d":"2.32E-05"},0.00157431,"yes","GO:0010200 GO:0006355 GO:0019538 GO:0005634 GO:0003700 GO:0002679 GO:0016671 GO:0055114","AT3G46600.1","GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G59450.1); Has 2508 Blast hits to 2402 proteins in 303 species: Archae - 0; Bacteria - 7; Metazoa - 2; Fungi - 0; Plants - 2499; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G47250","Chr3:17399876-17401731","cs","ls","OK",39.3185,11.5995,-1.76115,4.98987,{"v":6.04e-07,"d":"6.04E-07"},{"v":7.27e-05,"d":"7.27E-05"},"yes","GO:0008150 GO:0005886","AT3G47250.1","Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G47200.2); Has 1106 Blast hits to 1004 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G47340","Chr3:17437883-17441243","cs","ls","OK",1.53842,0.0656509,-4.55049,3.52513,0.000423282,0.0163474,"yes","GO:0005737 GO:0043617 GO:0009744 GO:0009750 GO:0006529 GO:0009749 GO:0009063 GO:0009646 GO:0004066","AT3G47340.1","encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.","protein_coding","GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1 (ASN1)","GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1 (ASN1)"]
["AT3G47348","Chr3:17445962-17446047","cs","ls","OK",14338.8,419.629,-5.09467,6.41105,{"v":1.45e-10,"d":"1.45E-10"},{"v":5.52e-08,"d":"5.52E-08"},"yes","GO:0000154 GO:0003674 GO:0005732","AT3G47348.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT3G47350","Chr3:17446817-17449703","cs","ls","OK",11.1323,0,"-1.79769e+308","-1.79769e+308",{"v":3.38e-06,"d":"3.38E-06"},0.000330576,"yes","GO:0016491 GO:0009507 GO:0008152 GO:0000166","AT3G47350.2","Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.","protein_coding","HYDROXYSTEROID DEHYDROGENASE 2 (HSD2)","HYDROXYSTEROID DEHYDROGENASE 2 (AtHSD2)"]
["AT3G47680","Chr3:17577397-17579577","cs","ls","OK",6.49878,0,"-1.79769e+308","-1.79769e+308",{"v":7.04e-06,"d":"7.04E-06"},0.000615422,"yes","GO:0009507 GO:0008150 GO:0003677","AT3G47680.1","DNA binding; BEST Arabidopsis thaliana protein match is: glutathione S-transferase THETA 3 (TAIR:AT5G41220.1); Has 545 Blast hits to 544 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 18; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","protein_coding"]
["AT3G47965","Chr3:17707917-17708909","cs","ls","OK",13.4735,0,"-1.79769e+308","-1.79769e+308",0.000360195,0.0143579,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G47965.1","unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT3G48520","Chr3:17974976-17976670","cs","ls","OK",0.155091,4.47466,4.85059,-4.83122,{"v":1.36e-06,"d":"1.36E-06"},0.0001464,"yes","GO:0010154 GO:0009753 GO:0009555 GO:0009620 GO:0016705 GO:0009611 GO:0020037 GO:0009695 GO:0019825 GO:0048480 GO:0005576 GO:0002213 GO:0009055 GO:0048653 GO:0055114 GO:0010200","AT3G48520.1","CYP94B3 is a jasmonoyl-isoleucine-12-hydroxylase that catalyzes the formation of 12-OH-JA-Ile from JA-Ile. By reducing the levels of this the biologically active phytohormone, CYP94B3 attenuates the jasmonic acid signaling cascade. CYP94B3 transcript levels rise in response to wounding.","protein_coding","CYTOCHROME P450, FAMILY 94, SUBFAMILY B, POLYPEPTIDE 3 (CYP94B3)","CYTOCHROME P450, FAMILY 94, SUBFAMILY B, POLYPEPTIDE 3 (CYP94B3)"]
["AT3G49580","Chr3:18375268-18375784","cs","ls","OK",40.1534,7.95265,-2.33601,3.67587,0.000237041,0.0105268,"yes","GO:0008150 GO:0005634 GO:0003674","AT3G49580.1","RESPONSE TO LOW SULFUR 1 (LSU1); BEST Arabidopsis thaliana protein match is: response to low sulfur 3 (TAIR:AT3G49570.1); Has 73 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","protein_coding","RESPONSE TO LOW SULFUR 1 (LSU1)","RESPONSE TO LOW SULFUR 1 (LSU1)"]
["AT3G49910","Chr3:18504255-18504967","cs","ls","OK",888.32,287.441,-1.62782,5.50719,{"v":3.65e-08,"d":"3.65E-08"},{"v":6.46e-06,"d":"6.46E-06"},"yes","GO:0005730 GO:0005886 GO:0005774 GO:0003735 GO:0009409 GO:0001510 GO:0022625 GO:0006412 GO:0009507","AT3G49910.1","Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G67510.1); Has 1113 Blast hits to 1113 proteins in 414 species: Archae - 314; Bacteria - 5; Metazoa - 375; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).","protein_coding"]
["AT3G50480","Chr3:18733067-18734388","cs","ls","OK",53.7314,0,"-1.79769e+308","-1.79769e+308",{"v":2.02e-10,"d":"2.02E-10"},{"v":7.33e-08,"d":"7.33E-08"},"yes","GO:0051707 GO:0003674 GO:0009507","AT3G50480.1","Homolog of RPW8","protein_coding","HOMOLOG OF RPW8 4 (HR4)","HOMOLOG OF RPW8 4 (HR4)"]
["AT3G50560","Chr3:18761087-18764016","cs","ls","OK",5.57344,0.702295,-2.98842,3.55037,0.000384687,0.0151216,"yes","GO:0005575 GO:0016491 GO:0008152 GO:0000166","AT3G50560.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G10050.1); Has 28315 Blast hits to 28305 proteins in 2489 species: Archae - 298; Bacteria - 21162; Metazoa - 1441; Fungi - 797; Plants - 407; Viruses - 0; Other Eukaryotes - 4210 (source: NCBI BLink).","protein_coding"]
["AT3G50930","Chr3:18929525-18931839","cs","ls","OK",5.28992,1.52771,-1.79187,3.27735,0.00104785,0.0327574,"yes","GO:0052542 GO:0010200 GO:0009627 GO:0009611 GO:0005739 GO:0009697 GO:0009612 GO:0016887 GO:0005886 GO:0005524","AT3G50930.1","cytochrome BC1 synthesis (BCS1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G50940.1); Has 21434 Blast hits to 19763 proteins in 2733 species: Archae - 1352; Bacteria - 7111; Metazoa - 3538; Fungi - 2773; Plants - 2474; Viruses - 30; Other Eukaryotes - 4156 (source: NCBI BLink).","protein_coding","CYTOCHROME BC1 SYNTHESIS (BCS1)","CYTOCHROME BC1 SYNTHESIS (BCS1)"]
["AT3G51660","Chr3:19164062-19165247","cs","ls","OK",29.7985,68.6505,1.20403,-3.27625,0.00105196,0.032834,"yes","GO:0005777 GO:0006569 GO:0009684 GO:0003674 GO:0006954 GO:0051707","AT3G51660.1","Tautomerase/MIF superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: Tautomerase/MIF superfamily protein (TAIR:AT5G01650.1); Has 396 Blast hits to 396 proteins in 86 species: Archae - 0; Bacteria - 25; Metazoa - 165; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).","protein_coding"]
["AT3G51860","Chr3:19239426-19242913","cs","ls","OK",0.832692,4.22695,2.34376,-3.32186,0.000894204,0.0291955,"yes","GO:0055062 GO:0006793 GO:0006874 GO:0016021 GO:0009624 GO:0006816 GO:0006882 GO:0006814 GO:0051592 GO:0005515 GO:0030026 GO:0015369 GO:0009705 GO:0055085 GO:0010351","AT3G51860.1","cation exchanger 3 (CAX3); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 1 (TAIR:AT2G38170.1); Has 3567 Blast hits to 3405 proteins in 1022 species: Archae - 24; Bacteria - 2167; Metazoa - 14; Fungi - 725; Plants - 252; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).","protein_coding","CATION EXCHANGER 3 (CAX3)","(ATCAX3)"]
["AT3G51920","Chr3:19268042-19269479","cs","ls","OK",65.1789,25.3666,-1.36147,3.63379,0.000279289,0.0118565,"yes","GO:0070838 GO:0005515 GO:0019722 GO:0009627 GO:0005829 GO:0009737 GO:0009612 GO:0005513 GO:0009269 GO:0005509 GO:0030003 GO:0005886 GO:0009409 GO:0009651 GO:0005634 GO:0031347","AT3G51920.1","encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Mutations in this gene alter plant responses to abiotic stress and abscisic acid.","protein_coding","CALMODULIN 9 (CAM9)","CALMODULIN 9 (CAM9)"]
["AT3G52400","Chr3:19425633-19427141","cs","ls","OK",30.0335,9.14286,-1.71585,4.04836,{"v":5.16e-05,"d":"5.16E-05"},0.00311201,"yes","GO:0009595 GO:0000165 GO:0006612 GO:0006862 GO:0006820 GO:0009697 GO:0042742 GO:0009414 GO:0007154 GO:0005484 GO:0043269 GO:0009733 GO:0010310 GO:0006888 GO:0009862 GO:0009738 GO:0009867 GO:0009963 GO:0051245 GO:0015696 GO:0043069 GO:0050832 GO:0043900 GO","AT3G52400.1","syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway","protein_coding","SYNTAXIN OF PLANTS 122 (SYP122)","SYNTAXIN OF PLANTS 122 (SYP122)"]
["AT3G53730","Chr3:19912493-19913033","cs","ls","OK",499.901,261.757,-0.933412,3.1167,0.00182886,0.0491935,"yes","GO:0005634 GO:0003677 GO:0006334 GO:0000786","AT3G53730.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink).","protein_coding"]
["AT3G55170","Chr3:20452909-20454342","cs","ls","OK",54.1921,14.1486,-1.93742,3.87593,0.000106218,0.00562273,"yes","GO:0003735 GO:0006412 GO:0042254 GO:0022625","AT3G55170.1","Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 1329 Blast hits to 1329 proteins in 532 species: Archae - 155; Bacteria - 387; Metazoa - 302; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).","protein_coding"]
["AT3G55970","Chr3:20766734-20769324","cs","ls","OK",0.487525,3.28728,2.75335,-3.11905,0.00181435,0.0489592,"yes","GO:0005737 GO:0016706 GO:0005506 GO:0043090 GO:0055114","AT3G55970.1","jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).","protein_coding","JASMONATE-REGULATED GENE 21 (JRG21)","JASMONATE-REGULATED GENE 21 (JRG21)"]
["AT3G56020","Chr3:20790569-20791085","cs","ls","OK",260.505,566.381,1.12046,-3.63818,0.000274569,0.0118044,"yes","GO:0003735 GO:0006412 GO:0022625","AT3G56020.1","Ribosomal protein L41 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 185 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 40; Plants - 48; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","protein_coding"]
["AT3G56090","Chr3:20814046-20816035","cs","ls","OK",48.889,135.678,1.4726,-4.71032,{"v":2.47e-06,"d":"2.47E-06"},0.000246724,"yes","GO:0009941 GO:0006879 GO:0048366 GO:0009570 GO:0016020 GO:0000302 GO:0008199 GO:0006826 GO:0010039 GO:0009908 GO:0015979 GO:0055114 GO:0016491","AT3G56090.1","Encodes FERRITIN 3, AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.","protein_coding","FERRITIN 3 (FER3)","FERRITIN 3 (FER3)"]
["AT3G56360","Chr3:20896480-20897593","cs","ls","OK",138.675,58.8174,-1.2374,3.99454,{"v":6.48e-05,"d":"6.48E-05"},0.00380688,"yes","GO:0008150 GO:0009536 GO:0003674","AT3G56360.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G56400","Chr3:20908927-20910481","cs","ls","OK",56.687,9.45757,-2.58348,6.3364,{"v":2.35e-10,"d":"2.35E-10"},{"v":8.34e-08,"d":"8.34E-08"},"yes","GO:0009595 GO:0009759 GO:0006612 GO:0010120 GO:0031348 GO:0009697 GO:0006944 GO:0001666 GO:0043565 GO:0010310 GO:0009862 GO:0005634 GO:0000165 GO:0009864 GO:0043069 GO:0050832 GO:0002679 GO:0045892 GO:0009409 GO:0035304 GO:0010200 GO:0010363 GO:0003700 GO","AT3G56400.1","member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.","protein_coding","WRKY DNA-BINDING PROTEIN 70 (WRKY70)","WRKY DNA-BINDING PROTEIN 70 (WRKY70)"]
["AT3G56710","Chr3:21006749-21007565","cs","ls","OK",23.0175,6.66121,-1.78888,3.56792,0.000359819,0.0143579,"yes","GO:0010310 GO:0071482 GO:0045088 GO:0009816 GO:0009862 GO:0005634 GO:0000165 GO:0050832 GO:0031348 GO:0009697 GO:0005515 GO:0006995 GO:0009507","AT3G56710.1","Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.","protein_coding","SIGMA FACTOR BINDING PROTEIN 1 (SIB1)","SIGMA FACTOR BINDING PROTEIN 1 (SIB1)"]
["AT3G57010","Chr3:21095653-21097451","cs","ls","OK",2.94573,10.8989,1.88749,-3.54136,0.000398069,0.0155552,"yes","GO:0016844 GO:0009507 GO:0005783 GO:0009821 GO:0016132","AT3G57010.1","Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G57020.1); Has 984 Blast hits to 970 proteins in 187 species: Archae - 1; Bacteria - 187; Metazoa - 221; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).","protein_coding"]
["AT3G57640","Chr3:21344799-21346057","cs","ls","OK",2.55764,0.151681,-4.0757,3.74412,0.000181028,0.00865923,"yes","GO:0006468 GO:0005524 GO:0004672","AT3G57640.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G65250.1); Has 19152 Blast hits to 18939 proteins in 410 species: Archae - 0; Bacteria - 70; Metazoa - 1065; Fungi - 99; Plants - 17549; Viruses - 14; Other Eukaryotes - 355 (source: NCBI BLink).","protein_coding"]
["AT3G58840","Chr3:21757311-21758772","cs","ls","OK",37.4172,85.768,1.19674,-3.21332,0.00131211,0.0387022,"yes","GO:0005778 GO:0007031 GO:0009536 GO:0007005 GO:0031966","AT3G58840.1","Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1. Involved in the morphogenesis and proliferation of peroxisomes and mitochondria.","protein_coding","PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR 1 (PMD1)","PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR 1 (PMD1)"]
["AT3G59765","Chr3:22076460-22078339","cs","ls","OK",16.4554,2.96622,-2.47187,3.42945,0.000604815,0.0216718,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G59765.1","Unknown gene","other_rna"]
["AT3G60150","Chr3:22222104-22223512","cs","ls","OK",4.69968,0.221363,-4.40808,3.83884,0.000123615,0.00628471,"yes","GO:0008150 GO:0003674 GO:0005739","AT3G60150.1","Protein of unknown function (DUF498/DUF598); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF498/DUF598) (TAIR:AT2G44525.1); Has 753 Blast hits to 753 proteins in 341 species: Archae - 0; Bacteria - 405; Metazoa - 118; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).","protein_coding"]
["AT3G60960","Chr3:22535705-22538635","cs","ls","OK",7.6483,0.398553,-4.2623,5.03465,{"v":4.79e-07,"d":"4.79E-07"},{"v":6.11e-05,"d":"6.11E-05"},"yes","GO:0008150 GO:0005739","AT3G60960.1","Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 6360 Blast hits to 3266 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 6335; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).","protein_coding"]
["AT3G61010","Chr3:22571326-22575255","cs","ls","OK",5.79001,0,"-1.79769e+308","-1.79769e+308",{"v":9.06e-07,"d":"9.06E-07"},0.000103344,"yes","GO:0006879 GO:0016798 GO:0008199 GO:0006826 GO:0009507 GO:0055114 GO:0016491","AT3G61010.2","Ferritin/ribonucleotide reductase-like family protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, oxidoreductase activity, ferric iron binding, binding, transition metal ion binding; INVOLVED IN: oxidation reduction, cellular iron ion homeostasis, iron ion transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin/Dps protein (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT3G11040.1).","protein_coding"]
["AT4G00234","Chr4:100918-101788","cs","ls","OK",0.203842,8.69371,5.41445,-4.84418,{"v":1.27e-06,"d":"1.27E-06"},0.000138669,"yes","GO:0008150 GO:0003674 GO:0009507","AT4G00234.1","BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel protein (TAIR:AT4G00290.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT4G00620","Chr4:259027-261019","cs","ls","OK",27.4243,57.8511,1.07689,-3.39748,0.000680093,0.0237685,"yes","GO:0009396 GO:0009507 GO:0055114 GO:0004488 GO:0000166","AT4G00620.1","Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (InterPro:IPR020867), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","EMBRYO DEFECTIVE 3127 (EMB3127)","EMBRYO DEFECTIVE 3127 (EMB3127)"]
["AT4G01130","Chr4:485832-488007","cs","ls","OK",11.8119,2.65971,-2.15091,3.71085,0.000206568,0.00942664,"yes","GO:0004091 GO:0005576 GO:0006629","AT4G01130.1","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1); Has 3308 Blast hits to 3260 proteins in 151 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 52; Plants - 3122; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT4G01590","Chr4:688812-690434","cs","ls","OK",39.8759,13.2996,-1.58413,3.5509,0.000383921,0.0151215,"yes","GO:0008150 GO:0005634 GO:0003674","AT4G01590.1","unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink).","protein_coding"]
["AT4G01593","Chr4:690709-692169","cs","ls","OK",25.3181,0,"-1.79769e+308","-1.79769e+308",{"v":2.05e-05,"d":"2.05E-05"},0.00146191,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G01593.1","Potential natural antisense gene, locus overlaps with AT4G01595","other_rna"]
["AT4G01600","Chr4:693180-694340","cs","ls","OK",5.55094,19.762,1.83193,-3.13091,0.00174268,0.0475599,"yes","GO:0005634 GO:0003674","AT4G01600.1","GRAM domain family protein; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: FH interacting protein 1 (TAIR:AT1G28200.1); Has 358 Blast hits to 358 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G01750","Chr4:756362-758590","cs","ls","OK",1.66992,0.0902964,-4.20897,3.63475,0.000278254,0.0118565,"yes","GO:0005794 GO:0035252 GO:0010306 GO:0005783 GO:0009507","AT4G01750.1","Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT2 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.","protein_coding","RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 2 (RGXT2)","RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 2 (RGXT2)"]
["AT4G01870","Chr4:808375-810446","cs","ls","OK",1.83946,8.40211,2.19147,-4.11715,{"v":3.84e-05,"d":"3.84E-05"},0.00239456,"yes","GO:0010583 GO:0005634 GO:0009738 GO:0009723 GO:0003674 GO:0009407 GO:0006508 GO:0019243","AT4G01870.1","tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 6090 Blast hits to 4220 proteins in 1098 species: Archae - 42; Bacteria - 3414; Metazoa - 20; Fungi - 42; Plants - 120; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink).","protein_coding"]
["AT4G02410","Chr4:1059888-1062153","cs","ls","OK",8.66835,2.18115,-1.99067,3.95074,{"v":7.79e-05,"d":"7.79E-05"},0.00439366,"yes","GO:0006468 GO:0004674 GO:0009862 GO:0009625 GO:0031348 GO:0005886 GO:0005524","AT4G02410.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G02420.1); Has 115275 Blast hits to 113889 proteins in 4562 species: Archae - 89; Bacteria - 12949; Metazoa - 42488; Fungi - 9587; Plants - 33653; Viruses - 400; Other Eukaryotes - 16109 (source: NCBI BLink).","protein_coding"]
["AT4G02540","Chr4:1117153-1119817","cs","ls","OK",5.34625,0.184434,-4.85735,5.06262,{"v":4.14e-07,"d":"4.14E-07"},{"v":5.44e-05,"d":"5.44E-05"},"yes","GO:0005634 GO:0047134 GO:0008270 GO:0055114","AT4G02540.1","Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1656 Blast hits to 645 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 1649; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT4G02850","Chr4:1264626-1268612","cs","ls","OK",15.2048,0,"-1.79769e+308","-1.79769e+308",0.000145707,0.00719509,"yes","GO:0003824 GO:0009058 GO:0007623 GO:0009736","AT4G02850.1","phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT1G03210.1); Has 3282 Blast hits to 3279 proteins in 1066 species: Archae - 40; Bacteria - 2414; Metazoa - 118; Fungi - 78; Plants - 90; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink).","protein_coding"]
["AT4G02970","Chr4:1317498-1319179","cs","ls","OK",17.1898,0,"-1.79769e+308","-1.79769e+308",{"v":1.42e-06,"d":"1.42E-06"},0.000152088,"yes","GO:0005786 GO:0005634 GO:0003674","AT4G02970.1","Signal recognition particle. Type 4 of RNA polymerase III dependent genes.","protein_coding","7SL RNA1 (AT7SL-1)","7SL RNA1 (AT7SL-1)"]
["AT4G03050","Chr4:1344181-1346501","cs","ls","OK",0,144.909,"1.79769e+308","1.79769e+308",{"v":2.4e-11,"d":"2.40E-11"},{"v":1.32e-08,"d":"1.32E-08"},"yes","GO:0005737 GO:0016706 GO:0005506 GO:0055114","AT4G03050.2","Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.","protein_coding","(AOP3)","(AOP3)"]
["AT4G04570","Chr4:2289958-2292755","cs","ls","OK",14.1941,1.62859,-3.12359,4.77309,{"v":1.81e-06,"d":"1.81E-06"},0.000186601,"yes","GO:0004674 GO:0006468 GO:0005576 GO:0004713 GO:0005524","AT4G04570.1","Encodes a cysteine-rich receptor-like protein kinase.","protein_coding","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 40 (CRK40)","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 40 (CRK40)"]
["AT4G04830","Chr4:2445793-2447086","cs","ls","OK",32.3391,5.36551,-2.5915,4.44316,{"v":8.86e-06,"d":"8.86E-06"},0.000730568,"yes","GO:0019344 GO:0005829 GO:0008113 GO:0055114 GO:0009507","AT4G04830.1","methionine sulfoxide reductase B5 (MSRB5); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B4 (TAIR:AT4G04810.1); Has 8417 Blast hits to 8406 proteins in 2250 species: Archae - 78; Bacteria - 4939; Metazoa - 269; Fungi - 135; Plants - 208; Viruses - 1; Other Eukaryotes - 2787 (source: NCBI BLink).","protein_coding","METHIONINE SULFOXIDE REDUCTASE B5 (MSRB5)","METHIONINE SULFOXIDE REDUCTASE B5 (MSRB5)"]
["AT4G05040","Chr4:2578645-2581798","cs","ls","OK",5.28184,0,"-1.79769e+308","-1.79769e+308",{"v":2.98e-05,"d":"2.98E-05"},0.00193171,"yes","GO:0005575 GO:0008150","AT4G05040.1","ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G05320","Chr4:2718169-2720308","cs","ls","OK",1057.09,231.782,-2.18926,6.54548,{"v":5.93e-11,"d":"5.93E-11"},{"v":2.74e-08,"d":"2.74E-08"},"yes","GO:0009751 GO:0007568 GO:0006464","AT4G05320.2","One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.","protein_coding","POLYUBIQUITIN 10 (UBQ10)","POLYUBIQUITIN 10 (UBQ10)"]
["AT4G07825","Chr4:4643839-4645338","cs","ls","OK",6.17856,0,"-1.79769e+308","-1.79769e+308",{"v":9.26e-06,"d":"9.26E-06"},0.000749631,"yes","GO:0008150 GO:0003674 GO:0005739","AT4G07825.1","unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G08035","Chr4:4866553-4868343","cs","ls","OK",48.5632,13.3921,-1.85848,4.53135,{"v":5.86e-06,"d":"5.86E-06"},0.000528988,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G08035.1","Unknown gene","other_rna"]
["AT4G09200","Chr4:5859256-5861803","cs","ls","OK",12.2655,0,"-1.79769e+308","-1.79769e+308",{"v":1.56e-07,"d":"1.56E-07"},{"v":2.33e-05,"d":"2.33E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G09200.1","SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G09250","Chr4:5876577-5878978","cs","ls","OK",7.33654,0,"-1.79769e+308","-1.79769e+308",{"v":2.83e-05,"d":"2.83E-05"},0.00185788,"yes","GO:0008150 GO:0005634 GO:0003674","AT4G09250.1","SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), LisH dimerisation motif (InterPro:IPR006594), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 549 Blast hits to 535 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 232; Fungi - 115; Plants - 74; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).","protein_coding"]
["AT4G09310","Chr4:5902825-5905372","cs","ls","OK",12.2655,0,"-1.79769e+308","-1.79769e+308",{"v":1.56e-07,"d":"1.56E-07"},{"v":2.33e-05,"d":"2.33E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G09310.1","SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09200.1); Has 841 Blast hits to 827 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 362; Fungi - 175; Plants - 154; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).","protein_coding"]
["AT4G09420","Chr4:5962180-5963791","cs","ls","OK",3.79254,0,"-1.79769e+308","-1.79769e+308",0.000106837,0.00564048,"yes","GO:0006952 GO:0007165 GO:0043531 GO:0005622","AT4G09420.1","Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: shoot apex, cotyledon, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72850.1); Has 8163 Blast hits to 8050 proteins in 270 species: Archae - 0; Bacteria - 112; Metazoa - 6; Fungi - 2; Plants - 8040; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","protein_coding"]
["AT4G09510","Chr4:6021163-6023873","cs","ls","OK",18.2563,7.82872,-1.22155,3.21412,0.00130846,0.0387022,"yes","GO:0010075 GO:0005634 GO:0005987 GO:0048364 GO:0004564 GO:0005829","AT4G09510.1","CINV2 appears to function as a neutral invertase based on the phenotype of a cinv1(AT1G35580)/cinv2 double mutant. It is predicted to be a cytosolic enzyme. CINV1, CINV2, and possibly other cytosolic invertases may play an important role in supplying carbon from sucrose to non-photosynthetic tissues.","protein_coding","CYTOSOLIC INVERTASE 2 (CINV2)","CYTOSOLIC INVERTASE 2 (CINV2)"]
["AT4G09680","Chr4:6116754-6123304","cs","ls","OK",4.19681,0.770774,-2.44492,4.43308,{"v":9.29e-06,"d":"9.29E-06"},0.000749631,"yes","GO:0000723 GO:0000781 GO:0005634 GO:0010048 GO:0005515","AT4G09680.1","Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.","protein_coding","CONSERVED TELOMERE MAINTENANCE COMPONENT 1 (CTC1)","(ATCTC1)"]
["AT4G10060","Chr4:6288826-6295402","cs","ls","OK",47.4233,19.4601,-1.28508,4.18553,{"v":2.84e-05,"d":"2.84E-05"},0.00186389,"yes","GO:0004348 GO:0005773 GO:0016021 GO:0006680 GO:0005886 GO:0010103","AT4G10060.1","Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT1G33700.2); Has 794 Blast hits to 727 proteins in 173 species: Archae - 72; Bacteria - 219; Metazoa - 159; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).","protein_coding"]
["AT4G10770","Chr4:6628403-6632599","cs","ls","OK",12.8759,3.64237,-1.82172,4.48372,{"v":7.34e-06,"d":"7.34E-06"},0.000638666,"yes","GO:0006857 GO:0016020 GO:0055085 GO:0015198","AT4G10770.1","oligopeptide transporter","protein_coding","OLIGOPEPTIDE TRANSPORTER 7 (OPT7)","ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7 (ATOPT7)"]
["AT4G11280","Chr4:6864096-6866116","cs","ls","OK",30.4832,14.3507,-1.0869,3.18314,0.00145686,0.0417318,"yes","GO:0005737 GO:0071281 GO:0016847 GO:0009737 GO:0010200 GO:0009753 GO:0042218 GO:0009612 GO:0009723 GO:0016740 GO:0009733 GO:0030170 GO:0009611 GO:0006979 GO:0042802","AT4G11280.1","encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family","protein_coding","1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6 (ACS6)","(ATACS6)"]
["AT4G11830","Chr4:7115735-7121245","cs","ls","OK",10.5512,1.48394,-2.82991,6.4761,{"v":9.41e-11,"d":"9.41E-11"},{"v":3.98e-08,"d":"3.98E-08"},"yes","GO:0009395 GO:0022626 GO:0006643 GO:0016020 GO:0046470 GO:0005509 GO:0004630 GO:0006979 GO:0009507","AT4G11830.2","Encodes one of three phospholipase D enzymes of the gamma class.","protein_coding","PHOSPHOLIPASE D GAMMA 2 (PLDGAMMA2)","PHOSPHOLIPASE D GAMMA 2 (PLDGAMMA2)"]
["AT4G12730","Chr4:7491382-7492876","cs","ls","OK",57.3549,23.5503,-1.28417,3.91803,{"v":8.93e-05,"d":"8.93E-05"},0.00489553,"yes","GO:0006084 GO:0016126 GO:0007030 GO:0048767 GO:0016132 GO:0010583 GO:0006816 GO:0005774 GO:0046658 GO:0009651","AT4G12730.1","AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds","protein_coding","FASCICLIN-LIKE ARABINOGALACTAN 2 (FLA2)","FASCICLIN-LIKE ARABINOGALACTAN 2 (FLA2)"]
["AT4G12917","Chr4:7563156-7563847","cs","ls","OK",8.07527,0,"-1.79769e+308","-1.79769e+308",0.000988295,0.0313397,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G12917.1","Unknown gene","other_rna"]
["AT4G13395","Chr4:7785686-7786113","cs","ls","OK",16.0178,0.865996,-4.20917,3.86942,0.000109093,0.00574118,"yes","GO:0048367 GO:0003674 GO:0005739","AT4G13395.1","ROTUNDIFOLIA like 12 (RTFL12); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 10 (TAIR:AT3G14362.1); Has 139 Blast hits to 139 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","ROTUNDIFOLIA LIKE 12 (RTFL12)","DEVIL 10 (DVL10)"]
["AT4G13495","Chr4:7842966-7846899","cs","ls","OK",489.166,141.48,-1.78973,5.39301,{"v":6.93e-08,"d":"6.93E-08"},{"v":1.15e-05,"d":"1.15E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT4G13495.1","Unknown gene","other_rna"]
["AT4G13630","Chr4:7933860-7936565","cs","ls","OK",9.87509,0.83557,-3.56296,5.64885,{"v":1.62e-08,"d":"1.62E-08"},{"v":3.17e-06,"d":"3.17E-06"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G13630.1","Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G04890.1); Has 608 Blast hits to 585 proteins in 84 species: Archae - 0; Bacteria - 9; Metazoa - 158; Fungi - 22; Plants - 359; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).","protein_coding"]
["AT4G13800","Chr4:8001861-8004139","cs","ls","OK",2.32055,0,"-1.79769e+308","-1.79769e+308",0.000852595,0.0283024,"yes","GO:0008150 GO:0005886","AT4G13800.1","Protein of unknown function (DUF803); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT3G23870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G13810","Chr4:8005031-8007510","cs","ls","OK",1.91366,0.156637,-3.61084,3.70617,0.000210418,0.00955837,"yes","GO:0006952 GO:0005886 GO:0006863 GO:0007165","AT4G13810.1","receptor like protein 47 (RLP47); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 50 (TAIR:AT4G13920.1); Has 94456 Blast hits to 27387 proteins in 1128 species: Archae - 39; Bacteria - 7351; Metazoa - 18966; Fungi - 1097; Plants - 59830; Viruses - 28; Other Eukaryotes - 7145 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 47 (RLP47)","RECEPTOR LIKE PROTEIN 47 (RLP47)"]
["AT4G14020","Chr4:8095214-8095736","cs","ls","OK",38.0341,161.763,2.08852,-5.39299,{"v":6.93e-08,"d":"6.93E-08"},{"v":1.15e-05,"d":"1.15E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G14020.1","Rapid alkalinization factor (RALF) family protein; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G14400","Chr4:8294445-8298602","cs","ls","OK",46.0959,0.41688,-6.78886,9.18426,0,0,"yes","GO:0009816 GO:0009615 GO:0008219 GO:0016020 GO:0009751","AT4G14400.1","encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.","protein_coding","ACCELERATED CELL DEATH 6 (ACD6)","ACCELERATED CELL DEATH 6 (ACD6)"]
["AT4G14610","Chr4:8380847-8383496","cs","ls","OK",1.95975,0.31062,-2.65744,3.27071,0.00107279,0.0331898,"yes","GO:0006499","AT4G14610.1","pseudogene, disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein.; blastp match of 45% identity and 2.2e-162 P-value to GP|24461866|gb|AAN62353.1|AF506028_20|AF506028 NBS-LRR type disease resistance protein {Poncirus trifoliata}","pseudogene"]
["AT4G15258","Chr4:8713225-8713353","cs","ls","OK",1034.88,60.7856,-4.08959,4.92158,{"v":8.58e-07,"d":"8.58E-07"},{"v":9.91e-05,"d":"9.91E-05"},"yes","GO:0031428 GO:0003674 GO:0031167","AT4G15258.1","Encodes a C/D box snoRNA (snoR37-2). Gb: AJ505638","small_nucleolar_rna","SMALL NUCLEOLAR RNA37-2 (SNOR37-2)","SMALL NUCLEOLAR RNA37-2 (SNOR37-2)"]
["AT4G15260","Chr4:8713688-8715339","cs","ls","OK",2.38472,0.0637857,-5.22444,4.29353,{"v":1.76e-05,"d":"1.76E-05"},0.00130748,"yes","GO:0005575 GO:0016758 GO:0019344 GO:0008194","AT4G15260.1","UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71B5 (TAIR:AT4G15280.1); Has 7322 Blast hits to 7283 proteins in 449 species: Archae - 0; Bacteria - 472; Metazoa - 1888; Fungi - 30; Plants - 4859; Viruses - 20; Other Eukaryotes - 53 (source: NCBI BLink).","protein_coding"]
["AT4G15440","Chr4:8835494-8838676","cs","ls","OK",0.576712,3.53404,2.6154,-3.38456,0.000712922,0.0246554,"yes","GO:0009941 GO:0004497 GO:0020037 GO:0016705 GO:0009611 GO:0006569 GO:0009684 GO:0006631 GO:0055114 GO:0009055","AT4G15440.1","Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.","protein_coding","HYDROPEROXIDE LYASE 1 (HPL1)","HYDROPEROXIDE LYASE 1 (HPL1)"]
["AT4G15690","Chr4:8934323-8934921","cs","ls","OK",54.8934,10.2878,-2.4157,4.58153,{"v":4.62e-06,"d":"4.62E-06"},0.000434205,"yes","GO:0005737 GO:0048653 GO:0008794 GO:0045454 GO:0015035 GO:0009055","AT4G15690.1","Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G15700.1); Has 1698 Blast hits to 1693 proteins in 230 species: Archae - 0; Bacteria - 23; Metazoa - 485; Fungi - 319; Plants - 757; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).","protein_coding"]
["AT4G16146","Chr4:9142403-9144583","cs","ls","OK",42.5141,108.162,1.34719,-3.723,0.000196868,0.00920483,"yes","GO:0003674 GO:0005634 GO:0007623","AT4G16146.1","cAMP-regulated phosphoprotein 19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: cAMP-regulated phosphoprotein/endosulphine conserved region (InterPro:IPR006760); BEST Arabidopsis thaliana protein match is: cAMP-regulated phosphoprotein 19-related protein (TAIR:AT1G69510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G16845","Chr4:9476142-9479878","cs","ls","OK",16.747,6.51596,-1.36185,3.4028,0.000666996,0.0234558,"yes","GO:0003700 GO:0006349 GO:0010048 GO:0016571 GO:0005677","AT4G16845.1","The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3","protein_coding","REDUCED VERNALIZATION RESPONSE 2 (VRN2)","REDUCED VERNALIZATION RESPONSE 2 (VRN2)"]
["AT4G16860","Chr4:9488465-9495816","cs","ls","OK",17.0773,6.95661,-1.29562,3.88532,0.000102196,0.00546819,"yes","GO:0009817 GO:0005622 GO:0007165 GO:0043531 GO:0030275","AT4G16860.1","Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 4 (RPP4)","RECOGNITION OF PERONOSPORA PARASITICA 4 (RPP4)"]
["AT4G16880","Chr4:9496184-9497313","cs","ls","OK",15.2592,0.649479,-4.55425,5.55204,{"v":2.82e-08,"d":"2.82E-08"},{"v":5.14e-06,"d":"5.14E-06"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G16880.1","Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT4G16890","Chr4:9500505-9505455","cs","ls","OK",35.3841,5.28063,-2.74432,8.24664,{"v":2.22e-16,"d":"2.22E-16"},{"v":2.94e-13,"d":"2.94E-13"},"yes","GO:0009733 GO:0005515 GO:0009816 GO:0009862 GO:0005634 GO:0017111 GO:0043531 GO:0005829","AT4G16890.1","Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.","protein_coding","SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1)","BALL (BAL)"]
["AT4G16900","Chr4:9511858-9516541","cs","ls","OK",3.91577,0.79046,-2.30853,3.93559,{"v":8.3e-05,"d":"8.30E-05"},0.00462071,"yes","GO:0006952 GO:0007165 GO:0043531 GO:0005622","AT4G16900.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G16950","Chr4:9538797-9544467","cs","ls","OK",33.6348,9.77553,-1.78271,5.71435,{"v":1.1e-08,"d":"1.10E-08"},{"v":2.35e-06,"d":"2.35E-06"},"yes","GO:0009817 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT4G16950.1","Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5)","RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5)"]
["AT4G16980","Chr4:9556977-9557812","cs","ls","OK",254.082,103.594,-1.29435,4.23907,{"v":2.24e-05,"d":"2.24E-05"},0.00154702,"yes","GO:0009651 GO:0019684 GO:0006833 GO:0009750 GO:0005886","AT4G16980.1","arabinogalactan-protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 61554 Blast hits to 29210 proteins in 1485 species: Archae - 170; Bacteria - 11775; Metazoa - 21955; Fungi - 6238; Plants - 10828; Viruses - 2421; Other Eukaryotes - 8167 (source: NCBI BLink).","protein_coding"]
["AT4G16990","Chr4:9560134-9565555","cs","ls","OK",122.921,44.3623,-1.47032,4.59845,{"v":4.26e-06,"d":"4.26E-06"},0.000406218,"yes","GO:0005737 GO:0009817 GO:0005634 GO:0007165 GO:0043531 GO:0015979","AT4G16990.2","RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6697 Blast hits to 6313 proteins in 180 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3)","RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3)"]
["AT4G17490","Chr4:9752823-9753867","cs","ls","OK",10.9533,1.2951,-3.08022,4.27205,{"v":1.94e-05,"d":"1.94E-05"},0.00140837,"yes","GO:0010200 GO:0003700 GO:0005634 GO:0000302 GO:0006355 GO:0002679 GO:0005515 GO:0009873 GO:0009644","AT4G17490.1","Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.","protein_coding","ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6 (ERF6)","ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6 (ATERF6)"]
["AT4G18205","Chr4:10073757-10075271","cs","ls","OK",12.9178,3.03983,-2.0873,4.21123,{"v":2.54e-05,"d":"2.54E-05"},0.00170336,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G18205.1","Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 7 (TAIR:AT4G18197.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT4G18210","Chr4:10076078-10077748","cs","ls","OK",3.91417,0.772538,-2.34103,3.11891,0.00181522,0.0489592,"yes","GO:0005737 GO:0016020 GO:0005345 GO:0006863 GO:0009624","AT4G18210.1","Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.","protein_coding","PURINE PERMEASE 10 (PUP10)","PURINE PERMEASE 10 (PUP10)"]
["AT4G19112","Chr4:10454496-10459328","cs","ls","OK",7.98403,0,"-1.79769e+308","-1.79769e+308",0.0012135,0.0363446,"yes","GO:0005739","AT4G19112.1","Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF25 represents a conserved upstream opening reading frame relative to major ORF AT4G19110.1","protein_coding","CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 25 (CPuORF25)","CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 25 (CPuORF25)"]
["AT4G19240","Chr4:10527799-10529092","cs","ls","OK",0,25.1671,"1.79769e+308","1.79769e+308",{"v":7.13e-09,"d":"7.13E-09"},{"v":1.68e-06,"d":"1.68E-06"},"yes","GO:0008150 GO:0003674 GO:0005739","AT4G19240.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G19500","Chr4:10625658-10631570","cs","ls","OK",14.3753,0,"-1.79769e+308","-1.79769e+308",{"v":6.47e-11,"d":"6.47E-11"},{"v":2.92e-08,"d":"2.92E-08"},"yes","GO:0006952 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT4G19500.1","nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157), Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 20045 Blast hits to 11477 proteins in 434 species: Archae - 7; Bacteria - 464; Metazoa - 257; Fungi - 40; Plants - 18821; Viruses - 4; Other Eukaryotes - 452 (source: NCBI BLink).","protein_coding"]
["AT4G19510","Chr4:10633684-10639001","cs","ls","OK",10.5534,0.0673294,-7.29225,5.95529,{"v":2.6e-09,"d":"2.60E-09"},{"v":6.69e-07,"d":"6.69E-07"},"yes","GO:0006952 GO:0007165 GO:0043531 GO:0005622","AT4G19510.1","Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G12010.1); Has 24495 Blast hits to 16844 proteins in 780 species: Archae - 22; Bacteria - 1657; Metazoa - 3405; Fungi - 143; Plants - 18330; Viruses - 4; Other Eukaryotes - 934 (source: NCBI BLink).","protein_coding"]
["AT4G19520","Chr4:10639268-10647079","cs","ls","OK",6.18799,2.75198,-1.169,3.13267,0.00173227,0.0474306,"yes","GO:0006952 GO:0005634 GO:0007165 GO:0043531 GO:0071456","AT4G19520.1","disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G19540","Chr4:10657382-10659233","cs","ls","OK",4.27268,13.2763,1.63564,-3.20305,0.00135978,0.0395781,"yes","GO:0005739","AT4G19540.1","Encodes a iron-suflur protein required for NADH dehydrogenase.","protein_coding","IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE (INDH)","IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE (INDL)"]
["AT4G20480","Chr4:11034271-11035874","cs","ls","OK",8.08972,0,"-1.79769e+308","-1.79769e+308",{"v":2.26e-05,"d":"2.26E-05"},0.00155392,"yes","GO:0008150","AT4G20480.1","Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G21410","Chr4:11402313-11405056","cs","ls","OK",6.96641,1.9464,-1.83961,3.46337,0.000533456,0.0195381,"yes","GO:0006468 GO:0009737 GO:0005773 GO:0004674 GO:0005576 GO:0005886 GO:0005524","AT4G21410.1","Encodes a cysteine-rich receptor-like protein kinase.","protein_coding","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 29 (CRK29)","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 29 (CRK29)"]
["AT4G21650","Chr4:11501197-11504678","cs","ls","OK",6.23552,0.266581,-4.54786,5.75231,{"v":8.8e-09,"d":"8.80E-09"},{"v":2.06e-06,"d":"2.06E-06"},"yes","GO:0004252 GO:0043086 GO:0005576 GO:0006508 GO:0009505 GO:0042802","AT4G21650.1","Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G21630.1); Has 7770 Blast hits to 6733 proteins in 1165 species: Archae - 228; Bacteria - 4634; Metazoa - 31; Fungi - 250; Plants - 1972; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).","protein_coding"]
["AT4G21870","Chr4:11603567-11604331","cs","ls","OK",45.2537,18.4668,-1.29311,3.14315,0.00167141,0.0463298,"yes","GO:0005737 GO:0009408 GO:0009644 GO:0042542","AT4G21870.1","HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 2331 Blast hits to 2331 proteins in 523 species: Archae - 47; Bacteria - 802; Metazoa - 2; Fungi - 44; Plants - 1239; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).","protein_coding"]
["AT4G22690","Chr4:11929358-11931693","cs","ls","OK",42.6745,20.8637,-1.03238,3.33456,0.00085435,0.0283133,"yes","GO:0005794 GO:0019825 GO:0020037 GO:0005618 GO:0016705 GO:0005739 GO:0005774 GO:0005886 GO:0009055 GO:0055114 GO:0009507","AT4G22690.1","member of CYP706A","protein_coding","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 1\" (CYP706A1)","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 1\" (CYP706A1)"]
["AT4G22710","Chr4:11934968-11936755","cs","ls","OK",33.1662,10.8206,-1.61594,4.54592,{"v":5.47e-06,"d":"5.47E-06"},0.000502666,"yes","GO:0005794 GO:0019825 GO:0020037 GO:0016705 GO:0006499 GO:0009506 GO:0009055 GO:0055114 GO:0009507","AT4G22710.1","member of CYP706A","protein_coding","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 2\" (CYP706A2)","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 2\" (CYP706A2)"]
["AT4G22960","Chr4:12030019-12033137","cs","ls","OK",0.0871379,2.85607,5.03459,-4.58057,{"v":4.64e-06,"d":"4.64E-06"},0.000434205,"yes","GO:0005737 GO:0003674 GO:0008150","AT4G22960.1","Protein of unknown function (DUF544) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G11860.1); Has 737 Blast hits to 425 proteins in 174 species: Archae - 0; Bacteria - 23; Metazoa - 282; Fungi - 261; Plants - 75; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).","protein_coding"]
["AT4G23600","Chr4:12310618-12313212","cs","ls","OK",25.0056,113.349,2.18045,-6.37189,{"v":1.87e-10,"d":"1.87E-10"},{"v":6.99e-08,"d":"6.99E-08"},"yes","GO:0006546 GO:0006636 GO:0006733 GO:0030154 GO:0042218 GO:0048046 GO:0008483 GO:0019288 GO:0009108 GO:0030170 GO:0009106 GO:0016847 GO:0042538 GO:0009753 GO:0005773 GO:0009965 GO:0009611 GO:0004121 GO:0010188 GO:0006766 GO:0019761 GO:0009117 GO:0045893 GO","AT4G23600.1","Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.","protein_coding","CORONATINE INDUCED 1 (CORI3)","JASMONIC ACID RESPONSIVE 2 (JR2)"]
["AT4G24000","Chr4:12462029-12465625","cs","ls","OK",0,1.27882,"1.79769e+308","1.79769e+308",0.00157178,0.0444463,"yes","GO:0005794 GO:0016020 GO:0016760 GO:0030244","AT4G24000.1","encodes a protein similar to cellulose synthase","protein_coding","CELLULOSE SYNTHASE LIKE G2 (CSLG2)","ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2 (ATCSLG2)"]
["AT4G24540","Chr4:12670964-12674072","cs","ls","OK",14.0955,2.9235,-2.26946,3.72861,0.000192537,0.00906663,"yes","GO:0005737 GO:0043565 GO:0010582 GO:0010076 GO:0010077 GO:0003700 GO:0005634 GO:0000060 GO:0048510 GO:0045893 GO:0010220 GO:0048481 GO:0046982 GO:0009739 GO:0042803","AT4G24540.1","Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.","protein_coding","AGAMOUS-LIKE 24 (AGL24)","AGAMOUS-LIKE 24 (AGL24)"]
["AT4G24570","Chr4:12686458-12687650","cs","ls","OK",71.9143,24.9346,-1.52813,4.47568,{"v":7.62e-06,"d":"7.62E-06"},0.000657393,"yes","GO:0010200 GO:0005310 GO:0009611 GO:0009612 GO:0005743 GO:0009693 GO:0006839 GO:0055085","AT4G24570.1","Encodes one of the mitochondrial dicarboxylate carriers (DIC): DIC1 (AT2G22500), DIC2 (AT4G24570), DIC3 (AT5G09470).","protein_coding","DICARBOXYLATE CARRIER 2 (DIC2)","DICARBOXYLATE CARRIER 2 (DIC2)"]
["AT4G25110","Chr4:12887517-12890262","cs","ls","OK",1.48612,0.108432,-3.77668,3.22218,0.0012722,0.0378059,"yes","GO:0006508 GO:0002237 GO:0004197 GO:0043069","AT4G25110.1","Encodes a type I metacaspase. Two Arabidopsis metacaspases, AT1G02170 (MC1) and AT4G25110 (MC2) antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues. A third type I Arabidopsis metacaspase is MC3 (AT5g64240).","protein_coding","METACASPASE 2 (MC2)","METACASPASE 2 (AtMC2)"]
["AT4G25300","Chr4:12945172-12946778","cs","ls","OK",4.32366,0.741099,-2.54451,3.11165,0.00186046,0.0498694,"yes","GO:0005737 GO:0016706 GO:0009813 GO:0055114","AT4G25300.1","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25310.1); Has 8488 Blast hits to 8445 proteins in 990 species: Archae - 0; Bacteria - 1083; Metazoa - 108; Fungi - 972; Plants - 4966; Viruses - 0; Other Eukaryotes - 1359 (source: NCBI BLink).","protein_coding"]
["AT4G25940","Chr4:13169640-13172881","cs","ls","OK",6.53946,1.48692,-2.13684,3.64255,0.000269953,0.0117261,"yes","GO:0005634 GO:0005545 GO:0048268 GO:0030276 GO:0006944 GO:0030118","AT4G25940.1","ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT5G57200.1); Has 8063 Blast hits to 4237 proteins in 339 species: Archae - 25; Bacteria - 270; Metazoa - 3478; Fungi - 641; Plants - 597; Viruses - 312; Other Eukaryotes - 2740 (source: NCBI BLink).","protein_coding"]
["AT4G27050","Chr4:13575799-13578051","cs","ls","OK",4.18937,13.6034,1.69917,-3.27001,0.00107545,0.0331898,"yes","GO:0008150 GO:0005634 GO:0003674","AT4G27050.1","F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT4G27820","Chr4:13857748-13860571","cs","ls","OK",15.6108,55.9259,1.84097,-5.58675,{"v":2.31e-08,"d":"2.31E-08"},{"v":4.33e-06,"d":"4.33E-06"},"yes","GO:0043169 GO:0005576 GO:0005777 GO:0005975 GO:0004553","AT4G27820.1","beta glucosidase 9 (BGLU9); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 11131 Blast hits to 10798 proteins in 1457 species: Archae - 142; Bacteria - 7630; Metazoa - 718; Fungi - 199; Plants - 1452; Viruses - 0; Other Eukaryotes - 990 (source: NCBI BLink).","protein_coding","BETA GLUCOSIDASE 9 (BGLU9)","BETA GLUCOSIDASE 9 (BGLU9)"]
["AT4G28860","Chr4:14246282-14249544","cs","ls","OK",37.9816,13.3637,-1.50698,3.49099,0.000481237,0.0181272,"yes","GO:0005737 GO:0004674 GO:0005634 GO:0046777 GO:0005524","AT4G28860.1","casein kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 3 (TAIR:AT4G28880.1); Has 66689 Blast hits to 66255 proteins in 2362 species: Archae - 56; Bacteria - 11242; Metazoa - 25400; Fungi - 7755; Plants - 10110; Viruses - 362; Other Eukaryotes - 11764 (source: NCBI BLink).","protein_coding","CASEIN KINASE I-LIKE 4 (ckl4)","CASEIN KINASE I-LIKE 4 (ckl4)"]
["AT4G29020","Chr4:14304920-14305721","cs","ls","OK",58.0445,287.995,2.31081,-5.67144,{"v":1.42e-08,"d":"1.42E-08"},{"v":2.84e-06,"d":"2.84E-06"},"yes","GO:0003674 GO:0010075","AT4G29020.1","glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92355 Blast hits to 23750 proteins in 1587 species: Archae - 185; Bacteria - 38167; Metazoa - 25977; Fungi - 4591; Plants - 7302; Viruses - 1155; Other Eukaryotes - 14978 (source: NCBI BLink).","protein_coding"]
["AT4G29050","Chr4:14314817-14316879","cs","ls","OK",0.718312,0.0390585,-4.2009,3.33654,0.000848277,0.0282322,"yes","GO:0004674 GO:0006468 GO:0030246 GO:0005524 GO:0005886","AT4G29050.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT1G70110.1); Has 123408 Blast hits to 121938 proteins in 4814 species: Archae - 120; Bacteria - 14220; Metazoa - 44809; Fungi - 10855; Plants - 34836; Viruses - 425; Other Eukaryotes - 18143 (source: NCBI BLink).","protein_coding"]
["AT4G29760","Chr4:14574113-14575148","cs","ls","OK",0.515811,15.907,4.94668,-5.27793,{"v":1.31e-07,"d":"1.31E-07"},{"v":2.01e-05,"d":"2.01E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT4G29760.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29770.2); Has 63 Blast hits to 63 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G29770","Chr4:14575717-14577643","cs","ls","OK",0.128083,3.30102,4.68776,-3.37175,0.000746923,0.0256525,"yes","GO:0006457 GO:0042542 GO:0005575 GO:0003674 GO:0009408 GO:0009644","AT4G29770.2","Target of trans acting-siR480/255.","protein_coding"]
["AT4G30110","Chr4:14720240-14724584","cs","ls","OK",11.7567,4.73729,-1.31135,3.41059,0.000648223,0.0228966,"yes","GO:0015434 GO:0055069 GO:0016021 GO:0030001 GO:0005886 GO:0015662 GO:0046872 GO:0006754 GO:0005524","AT4G30110.1","encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc","protein_coding","HEAVY METAL ATPASE 2 (HMA2)","HEAVY METAL ATPASE 2 (HMA2)"]
["AT4G30650","Chr4:14954319-14954968","cs","ls","OK",89.6272,216.617,1.27314,-3.98419,{"v":6.77e-05,"d":"6.77E-05"},0.00393021,"yes","GO:0050832 GO:0009409 GO:0016021 GO:0042538","AT4G30650.1","Low temperature and salt responsive protein family; INVOLVED IN: response to salt stress, response to cold, hyperosmotic salinity response, defense response to fungus; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT4G30660.2); Has 1315 Blast hits to 1315 proteins in 423 species: Archae - 0; Bacteria - 542; Metazoa - 42; Fungi - 322; Plants - 377; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).","protein_coding"]
["AT4G30660","Chr4:14955372-14956790","cs","ls","OK",148.623,321.09,1.11132,-3.13412,0.0017237,0.0472613,"yes","GO:0009409 GO:0016021 GO:0042538 GO:0042631 GO:0006333","AT4G30660.1","Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT2G24040.1); Has 1253 Blast hits to 1253 proteins in 413 species: Archae - 0; Bacteria - 522; Metazoa - 40; Fungi - 292; Plants - 377; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).","protein_coding"]
["AT4G32230","Chr4:15565294-15566971","cs","ls","OK",0,7.51949,"1.79769e+308","1.79769e+308",0.000951857,0.0304272,"yes","GO:0008150 GO:0003674 GO:0005739","AT4G32230.1","unknown protein; Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G33050","Chr4:15944321-15947026","cs","ls","OK",19.5705,4.88847,-2.00122,4.47321,{"v":7.71e-06,"d":"7.71E-06"},0.000662157,"yes","GO:0009595 GO:0000165 GO:0006612 GO:0031348 GO:0009697 GO:0042742 GO:0005737 GO:0010310 GO:0009862 GO:0005634 GO:0009867 GO:0006569 GO:0043069 GO:0009581 GO:0009684 GO:0050832 GO:0043900 GO:0010119 GO:0009646 GO:0010200 GO:0010363 GO:0030968 GO:0009625 GO","AT4G33050.2","Encodes a calmodulin-binding protein involved in stomatal movement.","protein_coding","EMBRYO SAC DEVELOPMENT ARREST 39 (EDA39)","EMBRYO SAC DEVELOPMENT ARREST 39 (EDA39)"]
["AT4G33120","Chr4:15975385-15978111","cs","ls","OK",2.65638,12.1366,2.19183,-3.83226,0.000126971,0.00639721,"yes","GO:0005737 GO:0008610 GO:0030794 GO:0005886","AT4G33120.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: (S)-coclaurine-N-methyltransferase activity; INVOLVED IN: lipid biosynthetic process; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G33110.2); Has 8479 Blast hits to 8475 proteins in 1584 species: Archae - 50; Bacteria - 4759; Metazoa - 58; Fungi - 355; Plants - 378; Viruses - 0; Other Eukaryotes - 2879 (source: NCBI BLink).","protein_coding"]
["AT4G33980","Chr4:16282695-16285059","cs","ls","OK",1.24777,11.7172,3.23121,-4.48181,{"v":7.4e-06,"d":"7.40E-06"},0.000641597,"yes","GO:0003674 GO:0005634 GO:0007623","AT4G33980.2","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3).","protein_coding"]
["AT4G34881","Chr4:16617622-16618506","cs","ls","OK",45.2221,0,"-1.79769e+308","-1.79769e+308",{"v":1.01e-09,"d":"1.01E-09"},{"v":3e-07,"d":"3.00E-07"},"yes","GO:0008150 GO:0003674 GO:0005739","AT4G34881.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G36430","Chr4:17204477-17205966","cs","ls","OK",1.21864,0.0439994,-4.79164,3.16136,0.00157033,0.0444463,"yes","GO:0020037 GO:0005618 GO:0004601 GO:0005576 GO:0051707 GO:0006979 GO:0055114","AT4G36430.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to other organism; LOCATED IN: cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4559 Blast hits to 4526 proteins in 292 species: Archae - 0; Bacteria - 6; Metazoa - 6; Fungi - 128; Plants - 4346; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).","protein_coding"]
["AT4G37300","Chr4:17554640-17555861","cs","ls","OK",66.6792,22.1407,-1.59054,4.71385,{"v":2.43e-06,"d":"2.43E-06"},0.000243706,"yes","GO:0009793 GO:0003674 GO:0005634","AT4G37300.1","maternal effect embryo arrest 59 (MEE59); Has 70 Blast hits to 70 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","MATERNAL EFFECT EMBRYO ARREST 59 (MEE59)","MATERNAL EFFECT EMBRYO ARREST 59 (MEE59)"]
["AT4G37320","Chr4:17559579-17561727","cs","ls","OK",3.46073,0.400621,-3.11077,3.63357,0.000279526,0.0118565,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT4G37320.1","member of CYP81D","protein_coding","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 5\" (CYP81D5)","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 5\" (CYP81D5)"]
["AT4G37410","Chr4:17590768-17592920","cs","ls","OK",12.3911,3.90159,-1.66717,3.50397,0.000458379,0.017365,"yes","GO:0042343 GO:0004497 GO:0016705 GO:0005783 GO:0020037 GO:0000041 GO:0019825 GO:0055114 GO:0009055","AT4G37410.1","member of CYP81F","protein_coding","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 4\" (CYP81F4)","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 4\" (CYP81F4)"]
["AT4G37530","Chr4:17634783-17636288","cs","ls","OK",5.28798,0.341255,-3.95379,4.2407,{"v":2.23e-05,"d":"2.23E-05"},0.00154283,"yes","GO:0020037 GO:0004601 GO:0005576 GO:0005515 GO:0009651 GO:0006979 GO:0055114","AT4G37530.1","Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G37520.1); Has 4599 Blast hits to 4569 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 225; Plants - 4296; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).","protein_coding"]
["AT4G37610","Chr4:17668950-17672353","cs","ls","OK",54.0512,13.0067,-2.05508,5.67589,{"v":1.38e-08,"d":"1.38E-08"},{"v":2.79e-06,"d":"2.79E-06"},"yes","GO:0005737 GO:0009733 GO:0009954 GO:0009751 GO:0010200 GO:0042542 GO:0005634 GO:0004402 GO:0003712 GO:0006355 GO:0008270 GO:0009409 GO:0010227 GO:0048439 GO:0005516","AT4G37610.1","BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.","protein_coding","BTB AND TAZ DOMAIN PROTEIN 5 (bt5)","BTB AND TAZ DOMAIN PROTEIN 5 (bt5)"]
["AT4G37900","Chr4:17821736-17824627","cs","ls","OK",0.686622,5.04386,2.87694,-4.33764,{"v":1.44e-05,"d":"1.44E-05"},0.00108608,"yes","GO:0005737 GO:0006865","AT4G37900.1","Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink).","protein_coding"]
["AT4G37990","Chr4:17855875-17857639","cs","ls","OK",0.0625041,5.66863,6.50291,-5.3544,{"v":8.58e-08,"d":"8.58E-08"},{"v":1.4e-05,"d":"1.40E-05"},"yes","GO:0047681 GO:0005737 GO:0009617 GO:0009809 GO:0010583 GO:0006865 GO:0009626 GO:0045551 GO:0008270 GO:0009407 GO:0000166 GO:0055114","AT4G37990.1","Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.","protein_coding","ELICITOR-ACTIVATED GENE 3-2 (ELI3-2)","ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8 (ATCAD8)"]
["AT4G39260","Chr4:18273898-18275079","cs","ls","OK",606.676,1216,1.00314,-3.26638,0.00108931,0.0334734,"yes","GO:0005794 GO:0009737 GO:0000380 GO:0005730 GO:0005618 GO:0045087 GO:0005777 GO:0000166 GO:0048046 GO:0009409 GO:0007623 GO:0003723 GO:0010043 GO:0009651 GO:0009506 GO:0009507","AT4G39260.1","Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).","protein_coding","COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1 (CCR1)","GLYCINE-RICH RNA-BINDING PROTEIN 8 (GR-RBP8)"]
["AT4G39364","Chr4:18305414-18305536","cs","ls","OK",874.23,0,"-1.79769e+308","-1.79769e+308",0.000360195,0.0143579,"yes","GO:0000154 GO:0003674 GO:0005732","AT4G39364.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT4G39770","Chr4:18448979-18451293","cs","ls","OK",16.3569,5.1303,-1.67278,3.62214,0.000292174,0.012244,"yes","GO:0005737 GO:0005992 GO:0004805","AT4G39770.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G22190.1); Has 2411 Blast hits to 2406 proteins in 857 species: Archae - 41; Bacteria - 1356; Metazoa - 219; Fungi - 156; Plants - 489; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).","protein_coding","TREHALOSE-6-PHOSPHATE PHOSPHATASE H (TPPH)","TREHALOSE-6-PHOSPHATE PHOSPHATASE H (TPPH)"]
["AT5G01600","Chr5:227023-230051","cs","ls","OK",41.6953,195.78,2.23127,-7.2823,{"v":3.28e-13,"d":"3.28E-13"},{"v":2.51e-10,"d":"2.51E-10"},"yes","GO:0009535 GO:0006879 GO:0048366 GO:0009570 GO:0009617 GO:0005739 GO:0042542 GO:0010043 GO:0008199 GO:0006826 GO:0010039 GO:0009409 GO:0009908 GO:0015979 GO:0055114 GO:0016491","AT5G01600.1","Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.","protein_coding","FERRETIN 1 (FER1)","FERRETIN 1 (FER1)"]
["AT5G02230","Chr5:448104-450654","cs","ls","OK",9.21843,27.751,1.58995,-3.31382,0.000920302,0.0298025,"yes","GO:0016787 GO:0008152","AT5G02230.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).","protein_coding"]
["AT5G03200","Chr5:758373-761803","cs","ls","OK",9.31647,0,"-1.79769e+308","-1.79769e+308",0.000137625,0.00682999,"yes","GO:0005737 GO:0004842 GO:0008270 GO:0006499","AT5G03200.1","Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.","protein_coding","LOG2-LIKE UBIQUITIN LIGASE1 (LUL1)","LOG2-LIKE UBIQUITIN LIGASE1 (LUL1)"]
["AT5G03210","Chr5:762786-763321","cs","ls","OK",1.48636,13.651,3.19915,-3.7099,0.000207341,0.00944018,"yes","GO:0005634 GO:0003674 GO:0051607 GO:0005829","AT5G03210.1","Encodes a small polypeptide contributing to resistance to potyvirus.","protein_coding","DBP-INTERACTING PROTEIN 2 (DIP2)","(ATDIP2)"]
["AT5G03350","Chr5:815673-816658","cs","ls","OK",62.5564,9.54396,-2.7125,6.59628,{"v":4.22e-11,"d":"4.22E-11"},{"v":1.99e-08,"d":"1.99E-08"},"yes","GO:0005618 GO:0030246 GO:0048046 GO:0008150 GO:0005886 GO:0009507","AT5G03350.1","Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT3G16530.1); Has 1816 Blast hits to 1796 proteins in 114 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","protein_coding"]
["AT5G03360","Chr5:817863-825149","cs","ls","OK",2.11681,0.126046,-4.06987,3.71916,0.000199888,0.00924457,"yes","GO:0005575 GO:0047134 GO:0055114","AT5G03360.1","DC1 domain-containing protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G26380.1); Has 3288 Blast hits to 689 proteins in 36 species: Archae - 2; Bacteria - 14; Metazoa - 5; Fungi - 0; Plants - 3251; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).","protein_coding"]
["AT5G03495","Chr5:873330-875251","cs","ls","OK",1.56928,0.0475771,-5.0437,3.35473,0.000794432,0.0270502,"yes","GO:0009507 GO:0008150 GO:0000166","AT5G03495.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G03480.1); Has 197 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT5G03545","Chr5:894705-895400","cs","ls","OK",6.12802,21.0695,1.78167,-3.1605,0.00157497,0.0444587,"yes","GO:0045892 GO:0016036 GO:0019375 GO:0003674 GO:0005739","AT5G03545.1","Expressed in response to phosphate starvation, this response is enhanced by the presence of IAA.","protein_coding","(AT4)","(AT4)"]
["AT5G04950","Chr5:1457644-1458890","cs","ls","OK",12.3634,29.78,1.26827,-3.37417,0.000740381,0.0255162,"yes","GO:0071281 GO:0009555 GO:0009860 GO:0071369 GO:0030410 GO:0030418 GO:0010233","AT5G04950.1","Encodes a nicotianamide synthase.","protein_coding","NICOTIANAMINE SYNTHASE 1 (NAS1)","ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1 (ATNAS1)"]
["AT5G05890","Chr5:1772542-1774113","cs","ls","OK",8.06574,0.780514,-3.36931,4.65343,{"v":3.26e-06,"d":"3.26E-06"},0.000320814,"yes","GO:0016758 GO:0005634 GO:0008194 GO:0008152","AT5G05890.1","UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G05880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G06760","Chr5:2089491-2090430","cs","ls","OK",0.134408,2.37868,4.14547,-3.17308,0.00150832,0.042958,"yes","GO:0005575 GO:0009793 GO:0003674 GO:0009414 GO:0009409 GO:0006970","AT5G06760.1","Encodes LEA4-5, a member of the Late Embryogenesis Abundant (LEA) proteins which typically accumulate in response to low water availability conditions imposed during development or by the environment. Most of the diverse set of LEA proteins can be grouped according to properties such as high hydrophilicity and high content of glycine or other small amino acids in what has been termed hydrophilins. LEA4-5 protects enzyme activities from the adverse effects induced by freeze-thaw cycles in vitro.","protein_coding","LATE EMBRYOGENESIS ABUNDANT 4-5 (LEA4-5)","LATE EMBRYOGENESIS ABUNDANT 4-5 (AtLEA4-5)"]
["AT5G07180","Chr5:2227570-2233417","cs","ls","OK",3.20253,7.57499,1.24203,-3.14962,0.00163486,0.0455169,"yes","GO:0009553 GO:0048443 GO:0006468 GO:0009740 GO:0009965 GO:0009686 GO:0009909 GO:0048507 GO:0004674 GO:0009845 GO:0048481 GO:0002237 GO:0010103 GO:0005524","AT5G07180.1","Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.","protein_coding","ERECTA-LIKE 2 (ERL2)","ERECTA-LIKE 2 (ERL2)"]
["AT5G07580","Chr5:2399503-2400601","cs","ls","OK",71.9929,23.4847,-1.61613,4.73609,{"v":2.18e-06,"d":"2.18E-06"},0.000219548,"yes","GO:0003700 GO:0006355 GO:0005634 GO:0009873","AT5G07580.1","encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.","protein_coding"]
["AT5G07690","Chr5:2446763-2448543","cs","ls","OK",38.2475,12.8053,-1.57863,4.62759,{"v":3.7e-06,"d":"3.70E-06"},0.000358229,"yes","GO:0009751 GO:0009753 GO:0003700 GO:0009682 GO:0005634 GO:0009625 GO:0009611 GO:0050832 GO:0006355 GO:0010438 GO:0010439 GO:0009414 GO:0009739","AT5G07690.1","Encodes a putative transcription factor (MYB29).","protein_coding","MYB DOMAIN PROTEIN 29 (MYB29)","MYB DOMAIN PROTEIN 29 (MYB29)"]
["AT5G07770","Chr5:2474641-2479402","cs","ls","OK",2.62135,0.413063,-2.66588,3.27081,0.00107241,0.0331898,"yes","GO:0003779 GO:0007015 GO:0005634","AT5G07770.1","Actin-binding FH2 protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1); Has 32498 Blast hits to 13926 proteins in 764 species: Archae - 52; Bacteria - 3235; Metazoa - 13136; Fungi - 3419; Plants - 6778; Viruses - 1558; Other Eukaryotes - 4320 (source: NCBI BLink).","protein_coding"]
["AT5G08380","Chr5:2694676-2697724","cs","ls","OK",7.97671,22.1735,1.47497,-3.6537,0.000258489,0.0113273,"yes","GO:0005737 GO:0016139 GO:0005990 GO:0048046 GO:0004557 GO:0046477 GO:0009505","AT5G08380.1","alpha-galactosidase 1 (AGAL1); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 2 (TAIR:AT5G08370.1); Has 1677 Blast hits to 1666 proteins in 372 species: Archae - 6; Bacteria - 673; Metazoa - 331; Fungi - 272; Plants - 227; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).","protein_coding","ALPHA-GALACTOSIDASE 1 (AGAL1)","ALPHA-GALACTOSIDASE 1 (AGAL1)"]
["AT5G08460","Chr5:2733219-2735455","cs","ls","OK",0.0707039,2.76622,5.28998,-4.20471,{"v":2.61e-05,"d":"2.61E-05"},0.00174144,"yes","GO:0004091 GO:0005576 GO:0006629 GO:0045893","AT5G08460.1","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G71250.1); Has 3252 Blast hits to 3210 proteins in 140 species: Archae - 0; Bacteria - 172; Metazoa - 0; Fungi - 11; Plants - 3054; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","protein_coding"]
["AT5G08610","Chr5:2790294-2794215","cs","ls","OK",41.1031,90.4323,1.13759,-3.83301,0.000126586,0.00639406,"yes","GO:0009220 GO:0009507 GO:0003676 GO:0008026 GO:0005524","AT5G08610.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G08620.1); Has 49840 Blast hits to 44437 proteins in 3094 species: Archae - 842; Bacteria - 25196; Metazoa - 7587; Fungi - 5309; Plants - 2787; Viruses - 50; Other Eukaryotes - 8069 (source: NCBI BLink).","protein_coding","PIGMENT DEFECTIVE 340 (PDE340)","PIGMENT DEFECTIVE 340 (PDE340)"]
["AT5G10150","Chr5:3181982-3183865","cs","ls","OK",43.0495,15.4343,-1.47985,4.23457,{"v":2.29e-05,"d":"2.29E-05"},0.00156205,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G10150.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G13170","Chr5:4181041-4183306","cs","ls","OK",0.223263,15.1606,6.08544,-6.44317,{"v":1.17e-10,"d":"1.17E-10"},{"v":4.65e-08,"d":"4.65E-08"},"yes","GO:0010150 GO:0015770 GO:0008515 GO:0071470 GO:0071446 GO:0005887 GO:0071215","AT5G13170.1","Encodes a member of the SWEET sucrose efflux transporter family proteins.","protein_coding","SENESCENCE-ASSOCIATED GENE 29 (SAG29)","SENESCENCE-ASSOCIATED GENE 29 (SAG29)"]
["AT5G15230","Chr5:4944899-4946216","cs","ls","OK",93.9876,207.212,1.14057,-3.38467,0.000712632,0.0246554,"yes","GO:0019344 GO:0045454 GO:0005576 GO:0003674 GO:0009740","AT5G15230.1","Encodes gibberellin-regulated protein GASA4. Promotes GA responses and exhibits redox activity.","protein_coding","GAST1 PROTEIN HOMOLOG 4 (GASA4)","GAST1 PROTEIN HOMOLOG 4 (GASA4)"]
["AT5G15360","Chr5:4987436-4989182","cs","ls","OK",0,11.8922,"1.79769e+308","1.79769e+308",{"v":6.74e-05,"d":"6.74E-05"},0.003925,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G15360.1","unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G17090","Chr5:5621248-5622476","cs","ls","OK",0,7.83862,"1.79769e+308","1.79769e+308",{"v":8.33e-05,"d":"8.33E-05"},0.00462071,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G17090.1","Cystatin/monellin superfamily protein; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G17120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G17100","Chr5:5623020-5624800","cs","ls","OK",0,4.18658,"1.79769e+308","1.79769e+308",0.000402847,0.015711,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G17100.1","Cystatin/monellin superfamily protein; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G17110.1); Has 96 Blast hits to 86 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G17870","Chr5:5907774-5908335","cs","ls","OK",322.709,108.564,-1.57169,4.9909,{"v":6.01e-07,"d":"6.01E-07"},{"v":7.27e-05,"d":"7.27E-05"},"yes","GO:0003735 GO:0009507 GO:0006412 GO:0019843","AT5G17870.1","plastid-specific ribosomal protein 6 precursor (Psrp-6) - like","protein_coding","PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6 (PSRP6)","PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6 (PSRP6)"]
["AT5G17880","Chr5:5908873-5913099","cs","ls","OK",4.61525,0,"-1.79769e+308","-1.79769e+308",{"v":1.33e-07,"d":"1.33E-07"},{"v":2.04e-05,"d":"2.04E-05"},"yes","GO:0005737 GO:0010114 GO:0042742 GO:0043531 GO:0007165","AT5G17880.1","Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.","protein_coding","CONSTITUTIVE SHADE-AVOIDANCE1 (CSA1)","CONSTITUTIVE SHADE-AVOIDANCE1 (CSA1)"]
["AT5G17890","Chr5:5916969-5923355","cs","ls","OK",6.86347,0.00921845,-9.5402,6.80788,{"v":9.9e-12,"d":"9.90E-12"},{"v":6.34e-09,"d":"6.34E-09"},"yes","GO:0006952 GO:0009409 GO:0005634 GO:0008270 GO:0043531","AT5G17890.1","Encodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance.","protein_coding","DA1-RELATED PROTEIN 4 (DAR4)","(CHS3)"]
["AT5G17910","Chr5:5927361-5932775","cs","ls","OK",11.8804,4.90427,-1.27647,3.63791,0.000274858,0.0118044,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G17910.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G19190","Chr5:6457259-6458031","cs","ls","OK",121.302,36.5975,-1.72878,4.89656,{"v":9.75e-07,"d":"9.75E-07"},0.000109379,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G19190.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G20450","Chr5:6910548-6913317","cs","ls","OK",3.62052,0.279269,-3.69647,3.96493,{"v":7.34e-05,"d":"7.34E-05"},0.00420003,"yes","GO:0005737 GO:0003674 GO:0008150","AT5G20450.1","CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast hits to 1458 proteins in 355 species: Archae - 28; Bacteria - 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses - 3; Other Eukaryotes - 412 (source: NCBI BLink).","protein_coding"]
["AT5G20630","Chr5:6975103-6975993","cs","ls","OK",145.023,492.572,1.76406,-5.89541,{"v":3.74e-09,"d":"3.74E-09"},{"v":9.39e-07,"d":"9.39E-07"},"yes","GO:0019684 GO:0070838 GO:0030003 GO:0010103 GO:0005634 GO:0018119 GO:0030145 GO:0031012 GO:0048046 GO:0042742 GO:0045735 GO:0009409 GO:0009505","AT5G20630.1","Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.","protein_coding","GERMIN 3 (GER3)","ARABIDOPSIS THALIANA GERMIN 3 (ATGER3)"]
["AT5G21090","Chr5:7164602-7167255","cs","ls","OK",203.378,97.1283,-1.0662,3.57895,0.000344972,0.0139471,"yes","GO:0007030 GO:0009266 GO:0009627 GO:0006833 GO:0042744 GO:0007165 GO:0006972 GO:0005886 GO:0046686 GO:0009651 GO:0006096 GO:0034976","AT5G21090.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G43740.1); Has 79109 Blast hits to 18390 proteins in 732 species: Archae - 33; Bacteria - 1866; Metazoa - 5774; Fungi - 472; Plants - 66918; Viruses - 0; Other Eukaryotes - 4046 (source: NCBI BLink).","protein_coding"]
["AT5G21940","Chr5:7249267-7250539","cs","ls","OK",102.301,47.297,-1.113,3.62962,0.000283838,0.0120138,"yes","GO:0005634 GO:0008150 GO:0005515","AT5G21940.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G22880","Chr5:7651956-7652622","cs","ls","OK",299.15,120.251,-1.31482,4.26548,{"v":1.99e-05,"d":"1.99E-05"},0.00143992,"yes","GO:0005730 GO:0006334 GO:0008283 GO:0005515 GO:0003677 GO:0000786","AT5G22880.1","Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.","protein_coding","HISTONE B2 (HTB2)","HISTONE B2 (HTB2)"]
["AT5G23010","Chr5:7703091-7706896","cs","ls","OK",206.281,57.0702,-1.8538,6.20485,{"v":5.47e-10,"d":"5.47E-10"},{"v":1.67e-07,"d":"1.67E-07"},"yes","GO:0019761 GO:0009625 GO:0009684 GO:0019344 GO:0009414 GO:0010177 GO:0009507","AT5G23010.1","Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.","protein_coding","METHYLTHIOALKYLMALATE SYNTHASE 1 (MAM1)","2-ISOPROPYLMALATE SYNTHASE 3 (IMS3)"]
["AT5G23020","Chr5:7718120-7721839","cs","ls","OK",15.904,102.233,2.6844,-8.12759,{"v":4.44e-16,"d":"4.44E-16"},{"v":5.19e-13,"d":"5.19E-13"},"yes","GO:0019761 GO:0005739 GO:0009684 GO:0019344 GO:0009098 GO:0010177 GO:0003852 GO:0009507","AT5G23020.1","methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.","protein_coding","2-ISOPROPYLMALATE SYNTHASE 2 (IMS2)","(MAM3)"]
["AT5G23240","Chr5:7825881-7828724","cs","ls","OK",10.9054,32.8091,1.58905,-4.3994,{"v":1.09e-05,"d":"1.09E-05"},0.00085172,"yes","GO:0031072 GO:0006457 GO:0051082 GO:0009507","AT5G23240.1","DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G23510","Chr5:7926944-7929338","cs","ls","OK",13.0157,1.46226,-3.15399,4.51273,{"v":6.4e-06,"d":"6.40E-06"},0.000567146,"yes","GO:0005634","AT5G23510.2","unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G23570","Chr5:7943123-7946050","cs","ls","OK",17.5488,43.8652,1.3217,-4.02019,{"v":5.82e-05,"d":"5.82E-05"},0.00345611,"yes","GO:0035196 GO:0010267 GO:0005783 GO:0009616 GO:0010025 GO:0010050 GO:0005829","AT5G23570.1","Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.","protein_coding","SUPPRESSOR OF GENE SILENCING 3 (SGS3)","SUPPRESSOR OF GENE SILENCING 3 (ATSGS3)"]
["AT5G24090","Chr5:8143698-8145252","cs","ls","OK",0.0846115,1.71664,4.34259,-3.34081,0.000835355,0.0280112,"yes","GO:0043169 GO:0005975 GO:0050665 GO:0004553 GO:0009611 GO:0009409 GO:0005576 GO:0010228 GO:0016926 GO:0009651 GO:0042631 GO:0009642","AT5G24090.1","Chitinase A (class III) expressed exclusively under environmental stress conditions.","protein_coding","CHITINASE A (CHIA)","CHITINASE A (CHIA)"]
["AT5G24150","Chr5:8172315-8175431","cs","ls","OK",20.6112,7.52427,-1.4538,3.76539,0.000166292,0.00805138,"yes","GO:0016126 GO:0004506 GO:0050660 GO:0019745 GO:0016021 GO:0005576 GO:0055114","AT5G24150.1","squalene monooxygenase gene homolog","protein_coding","(SQP1)","SQUALENE MONOOXYGENASE 5 (SQE5)"]
["AT5G24155","Chr5:8180117-8181027","cs","ls","OK",5.25353,36.349,2.79056,-3.55723,0.00037478,0.0148795,"yes","GO:0016126 GO:0055114 GO:0016491","AT5G24155.1","FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: squalene monoxygenase 6 (TAIR:AT5G24160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G24160","Chr5:8183074-8186640","cs","ls","OK",6.58035,27.2565,2.05036,-5.29815,{"v":1.17e-07,"d":"1.17E-07"},{"v":1.86e-05,"d":"1.86E-05"},"yes","GO:0016126 GO:0004506 GO:0050660 GO:0019745 GO:0016021 GO:0055114","AT5G24160.1","squalene monoxygenase 6 (SQE6); FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G24150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","SQUALENE MONOXYGENASE 6 (SQE6)","SQUALENE MONOXYGENASE 6 (SQE6)"]
["AT5G24170","Chr5:8189482-8191392","cs","ls","OK",6.26821,0.681467,-3.20134,3.51537,0.000439133,0.0168286,"yes","GO:0006661 GO:0016021 GO:0003674 GO:0016192","AT5G24170.1","Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305), Vesicle transport protein, SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G23550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G24240","Chr5:8228891-8234652","cs","ls","OK",0.0617089,6.21507,6.65415,-5.12857,{"v":2.92e-07,"d":"2.92E-07"},{"v":4e-05,"d":"4.00E-05"},"yes","GO:0016773 GO:0005777 GO:0009507","AT5G24240.1","Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: peroxisome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 4 (TAIR:AT2G46500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G24400","Chr5:8330314-8331837","cs","ls","OK",14.7684,33.4582,1.17985,-3.25955,0.00111589,0.0340792,"yes","GO:0017057 GO:0071461 GO:0009570 GO:0005777 GO:0009793 GO:0006098 GO:0042742 GO:0002229","AT5G24400.1","Encodes a protein with 6-phosphoglucunolactonase activity that localizes to the chloroplasts and the peroxisome. However, mutant phenotypes observed in pgl3 mutant plants can be complemented with a chloroplast-targeted version of the protein. PGL3 likely functions in the oxidative branch of the pentose phosphate pathway. pgl3 mutant phenotypes suggest that it is important in pathogen defense and maintenance of cellular redox homeostasis.","protein_coding","EMBRYO DEFECTIVE 2024 (emb2024)","6-PHOSPHOGLUCONOLACTONASE 3 (PGL3)"]
["AT5G24450","Chr5:8348241-8353303","cs","ls","OK",18.5256,6.42426,-1.52792,3.95514,{"v":7.65e-05,"d":"7.65E-05"},0.00433824,"yes","GO:0005634 GO:0003674 GO:0006487","AT5G24450.1","Transcription factor IIIC, subunit 5; CONTAINS InterPro DOMAIN/s: Transcription factor IIIC, subunit 5 (InterPro:IPR019136); BEST Arabidopsis thaliana protein match is: Transcription factor IIIC, subunit 5 (TAIR:AT3G49410.1); Has 680 Blast hits to 642 proteins in 201 species: Archae - 0; Bacteria - 19; Metazoa - 202; Fungi - 159; Plants - 80; Viruses - 10; Other Eukaryotes - 210 (source: NCBI BLink).","protein_coding"]
["AT5G24530","Chr5:8378832-8383401","cs","ls","OK",11.4924,3.08627,-1.89675,3.62887,0.000284668,0.0120233,"yes","GO:0005737 GO:0050832 GO:0009595 GO:0010310 GO:0010363 GO:0016706 GO:0009862 GO:0006612 GO:0000165 GO:0009813 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0042742 GO:0001666 GO:0034976 GO:0055114 GO:0010200","AT5G24530.1","Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.","protein_coding","DOWNY MILDEW RESISTANT 6 (DMR6)","DOWNY MILDEW RESISTANT 6 (DMR6)"]
["AT5G24735","Chr5:8468330-8469262","cs","ls","OK",48.1907,2.28732,-4.39702,5.97507,{"v":2.3e-09,"d":"2.30E-09"},{"v":6.01e-07,"d":"6.01E-07"},"yes","GO:0005575 GO:0003674 GO:0008150","AT5G24735.1","Unknown gene","other_rna"]
["AT5G24770","Chr5:8500475-8502224","cs","ls","OK",42.8167,9.43955,-2.18138,5.74643,{"v":9.11e-09,"d":"9.11E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0042538 GO:0009753 GO:0005773 GO:0009611 GO:0046688 GO:0022626 GO:0002213 GO:0006979 GO:0003993 GO:0009507","AT5G24770.1","Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.","protein_coding","VEGETATIVE STORAGE PROTEIN 2 (VSP2)","VEGETATIVE STORAGE PROTEIN 2 (VSP2)"]
["AT5G24780","Chr5:8507589-8508957","cs","ls","OK",11.1066,44.1684,1.9916,-4.75253,{"v":2.01e-06,"d":"2.01E-06"},0.000204507,"yes","GO:0009753 GO:0005773 GO:0008134 GO:0006952 GO:0003993 GO:0009507","AT5G24780.1","encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.","protein_coding","VEGETATIVE STORAGE PROTEIN 1 (VSP1)","VEGETATIVE STORAGE PROTEIN 1 (VSP1)"]
["AT5G24990","Chr5:8610536-8611694","cs","ls","OK",4.82275,0.393849,-3.61414,3.92298,{"v":8.75e-05,"d":"8.75E-05"},0.00480943,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G24990.1","Protein of unknown function (DUF1336); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT5G25010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G25110","Chr5:8657625-8659322","cs","ls","OK",0.162873,2.38833,3.87418,-3.8385,0.000123788,0.00628471,"yes","GO:0006468 GO:0050832 GO:0004674 GO:0007165 GO:0005886 GO:0005524","AT5G25110.1","member of AtCIPKs","protein_coding","CBL-INTERACTING PROTEIN KINASE 25 (CIPK25)","SNF1-RELATED PROTEIN KINASE 3.25 (SnRK3.25)"]
["AT5G25250","Chr5:8749726-8751636","cs","ls","OK",5.95952,0.722855,-3.04342,3.87727,0.000105636,0.00562043,"yes","GO:0006897 GO:0005774 GO:0003674 GO:0071456 GO:0005768 GO:0009506","AT5G25250.1","SPFH/Band 7/PHB domain-containing membrane-associated protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G25260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","FLOTILLIN 1 (FLOT1)","FLOTILLIN 1 (FLOT1)"]
["AT5G25980","Chr5:9072726-9075690","cs","ls","OK",303.979,1.66545,-7.51191,13.8301,0,0,"yes","GO:0043169 GO:0019762 GO:0009737 GO:0005773 GO:0019137 GO:0005777 GO:0048046 GO:0010119 GO:0022626 GO:0002213 GO:0009506 GO:0009507","AT5G25980.2","Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism.","protein_coding","GLUCOSIDE GLUCOHYDROLASE 2 (TGG2)","BETA GLUCOSIDASE 37 (BGLU37)"]
["AT5G26920","Chr5:9475681-9478751","cs","ls","OK",5.74387,0.224529,-4.67705,5.18245,{"v":2.19e-07,"d":"2.19E-07"},{"v":3.08e-05,"d":"3.08E-05"},"yes","GO:0009595 GO:0009867 GO:0006612 GO:0031348 GO:0006944 GO:0043565 GO:0010310 GO:0080142 GO:0005634 GO:0000165 GO:0071456 GO:0010112 GO:0043069 GO:0050832 GO:0009409 GO:0010200 GO:0010363 GO:0009816 GO:0003700 GO:0002237 GO:0005516 GO:0009862 GO:0019684","AT5G26920.1","Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.","protein_coding","CAM-BINDING PROTEIN 60-LIKE G (CBP60G)","CAM-BINDING PROTEIN 60-LIKE G (CBP60G)"]
["AT5G26980","Chr5:9488147-9490816","cs","ls","OK",5.28051,1.09682,-2.26736,3.42225,0.000621048,0.022094,"yes","GO:0006891 GO:0030140 GO:0005802 GO:0006623 GO:0006944 GO:0045492 GO:0005484 GO:0010413","AT5G26980.1","member of SYP4 Gene Family","protein_coding","SYNTAXIN OF PLANTS 41 (SYP41)","SYNTAXIN OF PLANTS 41 (SYP41)"]
["AT5G27220","Chr5:9578756-9582752","cs","ls","OK",0.168096,1.47386,3.13223,-3.54884,0.000386938,0.01518,"yes","GO:0003674 GO:0005829 GO:0008150","AT5G27220.1","Frigida-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G27990","Chr5:10017035-10018441","cs","ls","OK",45.9053,6.68284,-2.78013,5.62886,{"v":1.81e-08,"d":"1.81E-08"},{"v":3.53e-06,"d":"3.53E-06"},"yes","GO:0005575 GO:0003674 GO:0008150","AT5G27990.1","Pre-rRNA-processing protein TSR2, conserved region; CONTAINS InterPro DOMAIN/s: Pre-rRNA-processing protein TSR2, conserved region (InterPro:IPR019398); BEST Arabidopsis thaliana protein match is: Pre-rRNA-processing protein TSR2, conserved region (TAIR:AT3G22510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G28030","Chr5:10030405-10032451","cs","ls","OK",20.0496,86.2651,2.10521,-5.81032,{"v":6.24e-09,"d":"6.24E-09"},{"v":1.49e-06,"d":"1.49E-06"},"yes","GO:0005737 GO:0006535 GO:0004124 GO:0030170","AT5G28030.2","L-cysteine desulfhydrase 1 (DES1); FUNCTIONS IN: pyridoxal phosphate binding, cysteine synthase activity, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase D2 (TAIR:AT5G28020.6); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding","L-CYSTEINE DESULFHYDRASE 1 (DES1)","L-CYSTEINE DESULFHYDRASE 1 (DES1)"]
["AT5G28350","Chr5:10320138-10326946","cs","ls","OK",9.78928,1.71992,-2.50886,5.27087,{"v":1.36e-07,"d":"1.36E-07"},{"v":2.06e-05,"d":"2.06E-05"},"yes","GO:0008150 GO:0005794 GO:0003674 GO:0009507","AT5G28350.1","Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G28630","Chr5:10636630-10637249","cs","ls","OK",21.7128,3.13275,-2.79305,3.68275,0.000230733,0.0102928,"yes","GO:0005575 GO:0003674 GO:0008150","AT5G28630.1","glycine-rich protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28610.1); Has 3156 Blast hits to 2062 proteins in 232 species: Archae - 6; Bacteria - 50; Metazoa - 1681; Fungi - 287; Plants - 258; Viruses - 160; Other Eukaryotes - 714 (source: NCBI BLink).","protein_coding"]
["AT5G28770","Chr5:10796458-10798222","cs","ls","OK",47.2381,20.2598,-1.22133,3.28746,0.00101097,0.0319582,"yes","GO:0030968 GO:0003700 GO:0005634 GO:0006355 GO:0009410 GO:0071333 GO:0071215 GO:0046982 GO:0042802","AT5G28770.2","bZIP protein BZO2H3 mRNA, partial cds","protein_coding","(BZO2H3)","(BZO2H3)"]
["AT5G28910","Chr5:10930568-10932999","cs","ls","OK",3.32179,10.1744,1.61491,-3.43341,0.000596035,0.0213958,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G28910.2","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","protein_coding"]
["AT5G28919","Chr5:10940032-10943378","cs","ls","OK",7.35632,0,"-1.79769e+308","-1.79769e+308",{"v":4e-06,"d":"4.00E-06"},0.000383713,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G28919.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT3G01345.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G32460","Chr5:12081802-12084148","cs","ls","OK",0.0264297,4.99081,7.56097,-4.83446,{"v":1.34e-06,"d":"1.34E-06"},0.00014482,"yes","GO:0006355 GO:0005634 GO:0003677","AT5G32460.1","Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G00260.1); Has 518 Blast hits to 261 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G35450","Chr5:13667685-13671184","cs","ls","OK",4.32896,0.829753,-2.38327,4.08721,{"v":4.37e-05,"d":"4.37E-05"},0.00265858,"yes","GO:0006952 GO:0043531 GO:0005886","AT5G35450.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G35490","Chr5:13689816-13690548","cs","ls","OK",4.09327,0.381212,-3.42459,3.49298,0.000477658,0.0180266,"yes","GO:0003674 GO:0008150","AT5G35490.1","Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. A maternally expressed imprinted gene.","protein_coding","MTO 1 RESPONDING UP 1 (MRU1)","MTO 1 RESPONDING UP 1 (MRU1)"]
["AT5G36910","Chr5:14561816-14562750","cs","ls","OK",28.8711,2.47446,-3.54444,5.29076,{"v":1.22e-07,"d":"1.22E-07"},{"v":1.92e-05,"d":"1.92E-05"},"yes","GO:0006952 GO:0005576 GO:0050827","AT5G36910.1","Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.","protein_coding","THIONIN 2.2 (THI2.2)","THIONIN 2.2 (THI2.2)"]
["AT5G36930","Chr5:14567621-14572630","cs","ls","OK",6.52219,0,"-1.79769e+308","-1.79769e+308",{"v":2.25e-09,"d":"2.25E-09"},{"v":5.95e-07,"d":"5.95E-07"},"yes","GO:0005737 GO:0006952 GO:0007165 GO:0043531","AT5G36930.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G37130","Chr5:14681377-14686684","cs","ls","OK",23.281,140.95,2.59796,-8.58989,0,0,"yes","GO:0048046 GO:0005634 GO:0008150","AT5G37130.1","Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G17270.1); Has 5505 Blast hits to 3950 proteins in 698 species: Archae - 506; Bacteria - 2164; Metazoa - 520; Fungi - 303; Plants - 259; Viruses - 0; Other Eukaryotes - 1753 (source: NCBI BLink).","protein_coding"]
["AT5G37290","Chr5:14762369-14764344","cs","ls","OK",15.9233,3.71339,-2.10034,3.62345,0.000290695,0.0122258,"yes","GO:0005634 GO:0008150","AT5G37290.1","ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G37440","Chr5:14844358-14845560","cs","ls","OK",3.10163,0.407841,-2.92695,3.1646,0.00155298,0.0440828,"yes","GO:0005737 GO:0031072 GO:0006457 GO:0051082","AT5G37440.1","Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G37750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G37830","Chr5:15056187-15060777","cs","ls","OK",18.1831,7.05848,-1.36517,4.19883,{"v":2.68e-05,"d":"2.68E-05"},0.00177534,"yes","GO:0006751 GO:0005829 GO:0017168 GO:0009506","AT5G37830.1","Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.","protein_coding","OXOPROLINASE 1 (OXP1)","OXOPROLINASE 1 (OXP1)"]
["AT5G38290","Chr5:15303335-15305548","cs","ls","OK",30.3377,11.6659,-1.37881,3.21789,0.00129136,0.038318,"yes","GO:0004045 GO:0006783 GO:0016556 GO:0030154 GO:0009965 GO:0006412 GO:0009507","AT5G38290.2","Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G39020","Chr5:15616916-15619358","cs","ls","OK",2.62177,0.534862,-2.2933,3.2809,0.00103477,0.0323995,"yes","GO:0009595 GO:0009867 GO:0006612 GO:0031348 GO:0009697 GO:0042742 GO:0010310 GO:0009862 GO:0000165 GO:0004674 GO:0043069 GO:0005524 GO:0009581 GO:0006468 GO:0050832 GO:0043900 GO:0035304 GO:0010200 GO:0010363 GO:0009625 GO:0006355 GO:0002237","AT5G39020.1","Malectin/receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G39030.1); Has 113939 Blast hits to 112470 proteins in 4297 species: Archae - 118; Bacteria - 12172; Metazoa - 42643; Fungi - 9539; Plants - 32560; Viruses - 275; Other Eukaryotes - 16632 (source: NCBI BLink).","protein_coding"]
["AT5G39080","Chr5:15641657-15643161","cs","ls","OK",42.5832,17.796,-1.25873,3.72071,0.000198662,0.00923273,"yes","GO:0005575 GO:0016747","AT5G39080.1","HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G39050.1); Has 2008 Blast hits to 1990 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 42; Plants - 1965; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT5G39410","Chr5:15766036-15770410","cs","ls","OK",13.8031,29.288,1.08532,-3.14848,0.00164122,0.04563,"yes","GO:0009941 GO:0007623 GO:0006333 GO:0005739 GO:0000166 GO:0005886 GO:0005774 GO:0055114 GO:0016491","AT5G39410.1","Saccharopine dehydrogenase ; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase / Homospermidine synthase (InterPro:IPR005097); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G39790","Chr5:15932713-15935261","cs","ls","OK",26.3994,6.9553,-1.92432,4.41586,{"v":1.01e-05,"d":"1.01E-05"},0.000800566,"yes","GO:0030247 GO:0009507","AT5G39790.1","Encodes a chloroplast localized protein with starch binding activity that may be involved in carbohydrate metabolism.","protein_coding"]
["AT5G39860","Chr5:15957416-15958455","cs","ls","OK",6.7686,25.9391,1.9382,-3.59631,0.000322765,0.013238,"yes","GO:0009826 GO:0009741 GO:0003700 GO:0005634 GO:0048510 GO:0009640","AT5G39860.1","Encodes PRE1 (PACLOBUTRAZOL RESISTANCE1). PRE1 and IBH1 form a pair of antagonistic HLH/bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation. BNQ1 is directly and negatively regulated by AP3 and PI in petals.Required for appropriate regulation of flowering time.","protein_coding","PACLOBUTRAZOL RESISTANCE1 (PRE1)","PACLOBUTRAZOL RESISTANCE1 (PRE1)"]
["AT5G40170","Chr5:16065090-16067574","cs","ls","OK",11.6012,4.70217,-1.30287,3.40207,0.00066878,0.0234558,"yes","GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0031348 GO:0009867 GO:0016301 GO:0005886 GO:0035304","AT5G40170.1","receptor like protein 54 (RLP54); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 27 (TAIR:AT2G33060.1); Has 95502 Blast hits to 27133 proteins in 1050 species: Archae - 52; Bacteria - 4975; Metazoa - 18576; Fungi - 1120; Plants - 63605; Viruses - 17; Other Eukaryotes - 7157 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 54 (RLP54)","RECEPTOR LIKE PROTEIN 54 (AtRLP54)"]
["AT5G40330","Chr5:16127724-16129655","cs","ls","OK",11.7435,2.52022,-2.22024,3.48141,0.000498783,0.0185446,"yes","GO:0048629 GO:0010053 GO:0003700 GO:0010091 GO:0005634 GO:0006355 GO:0005515","AT5G40330.1","Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.","protein_coding","MYB DOMAIN PROTEIN 23 (MYB23)","MYB DOMAIN PROTEIN 23 (MYB23)"]
["AT5G40500","Chr5:16227833-16228693","cs","ls","OK",63.8312,19.6884,-1.69692,3.835,0.000125566,0.00635871,"yes","GO:0006661 GO:0003674 GO:0005739","AT5G40500.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G41140","Chr5:16468433-16477013","cs","ls","OK",38.8187,14.7279,-1.3982,4.1646,{"v":3.12e-05,"d":"3.12E-05"},0.00199729,"yes","GO:0005575 GO:0003674 GO:0008150","AT5G41140.1","Myosin heavy chain-related protein; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G63300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G41740","Chr5:16688625-16693119","cs","ls","OK",4.09553,0.346383,-3.56361,5.00332,{"v":5.64e-07,"d":"5.64E-07"},{"v":6.95e-05,"d":"6.95E-05"},"yes","GO:0006952 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT5G41740.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 3146 Blast hits to 2582 proteins in 174 species: Archae - 0; Bacteria - 334; Metazoa - 256; Fungi - 13; Plants - 2498; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).","protein_coding"]
["AT5G41750","Chr5:16693908-16698943","cs","ls","OK",5.27927,1.63978,-1.68683,3.64014,0.000272492,0.011779,"yes","GO:0006952 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT5G41750.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G42530","Chr5:17004737-17005393","cs","ls","OK",237.7,29.3934,-3.01558,7.37942,{"v":1.59e-13,"d":"1.59E-13"},{"v":1.26e-10,"d":"1.26E-10"},"yes","GO:0008150 GO:0003674 GO:0005739","AT5G42530.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G42800","Chr5:17164140-17165918","cs","ls","OK",33.182,13.0181,-1.34989,3.73157,0.000190288,0.00905854,"yes","GO:0050662 GO:0009744 GO:0009718 GO:0000166 GO:0045552 GO:0042406 GO:0010224","AT5G42800.1","dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. Not expressed in roots (qRT-PCR).","protein_coding","DIHYDROFLAVONOL 4-REDUCTASE (DFR)","DIHYDROFLAVONOL 4-REDUCTASE (DFR)"]
["AT5G42825","Chr5:17171963-17172742","cs","ls","OK",9.66917,0,"-1.79769e+308","-1.79769e+308",0.000118998,0.00620008,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G42825.1","unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G42830","Chr5:17176383-17178018","cs","ls","OK",1.78368,0.138875,-3.683,3.3144,0.000918409,0.0297898,"yes","GO:0005829 GO:0016747","AT5G42830.1","HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G07850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G42900","Chr5:17197640-17199793","cs","ls","OK",2.26567,14.848,2.71226,-3.84631,0.000119909,0.00621005,"yes","GO:0009409 GO:0005634 GO:0003674","AT5G42900.1","cold regulated gene 27 (COR27); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33980.1); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","COLD REGULATED GENE 27 (COR27)","COLD REGULATED GENE 27 (COR27)"]
["AT5G43050","Chr5:17268024-17269024","cs","ls","OK",19.6148,1.66503,-3.55833,4.5784,{"v":4.69e-06,"d":"4.69E-06"},0.000436678,"yes","GO:0010196 GO:0003674 GO:0009507","AT5G43050.1","Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq7","protein_coding","NONPHOTOCHEMICAL QUENCHING 6 (NPQ6)","NONPHOTOCHEMICAL QUENCHING 6 (NPQ6)"]
["AT5G43150","Chr5:17325012-17325923","cs","ls","OK",50.2491,11.1526,-2.17172,4.43752,{"v":9.1e-06,"d":"9.10E-06"},0.000743385,"yes","GO:0015996 GO:0003674 GO:0005739","AT5G43150.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G43210","Chr5:17347566-17348641","cs","ls","OK",12.018,1.37665,-3.12597,3.87668,0.000105891,0.00562043,"yes","GO:0004518 GO:0005634 GO:0006281","AT5G43210.1","Excinuclease ABC, C subunit, N-terminal; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305); BEST Arabidopsis thaliana protein match is: Excinuclease ABC, C subunit, N-terminal (TAIR:AT2G30350.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G43440","Chr5:17453597-17456657","cs","ls","OK",19.9339,4.14792,-2.26476,3.82146,0.000132662,0.00663344,"yes","GO:0005737 GO:0016706 GO:0009815 GO:0055114","AT5G43440.1","encodes a protein whose sequence is similar to ACC oxidase","protein_coding"]
["AT5G43470","Chr5:17462546-17467643","cs","ls","OK",29.7268,9.2785,-1.6798,5.02744,{"v":4.97e-07,"d":"4.97E-07"},{"v":6.25e-05,"d":"6.25E-05"},"yes","GO:0009626 GO:0009416 GO:0051607 GO:0043531 GO:0005886","AT5G43470.1","Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of hypersensitive response and resistance to turnip crinkle virus.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 8 (RPP8)","RESISTANT TO CMV(Y) 1 (RCY1)"]
["AT5G43620","Chr5:17522519-17524001","cs","ls","OK",1.95393,0.183882,-3.40953,3.3382,0.000843223,0.0281798,"yes","GO:0005634 GO:0008150 GO:0008270","AT5G43620.1","Pre-mRNA cleavage complex II; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G43740","Chr5:17564737-17568802","cs","ls","OK",10.4493,2.91277,-1.84294,4.46413,{"v":8.04e-06,"d":"8.04E-06"},0.000683719,"yes","GO:0006952 GO:0043531","AT5G43740.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 13811 Blast hits to 13486 proteins in 476 species: Archae - 7; Bacteria - 232; Metazoa - 616; Fungi - 57; Plants - 12812; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).","protein_coding"]
["AT5G43860","Chr5:17630449-17632312","cs","ls","OK",3.20614,0.253674,-3.65979,3.46055,0.000539082,0.0197078,"yes","GO:0015996 GO:0047746 GO:0009507","AT5G43860.1","Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation.","protein_coding","CHLOROPHYLLASE 2 (CLH2)","ARABIDOPSIS THALIANA CHLOROPHYLLASE 2 (ATCLH2)"]
["AT5G45420","Chr5:18404068-18406606","cs","ls","OK",41.3364,9.05077,-2.1913,5.23682,{"v":1.63e-07,"d":"1.63E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0003700 GO:0005634 GO:0048767 GO:0005783 GO:0005886","AT5G45420.1","The gene encodes a MYB transcription factor belons to R2R3-MYB family of transcription factors. Knock-down mutant analysis indicates its role in root hair elongation.","protein_coding","MEMBRANE ANCHORED MYB (maMYB)","MEMBRANE ANCHORED MYB (maMYB)"]
["AT5G45480","Chr5:18425836-18432397","cs","ls","OK",7.39816,1.87699,-1.97874,3.2645,0.00109657,0.0336444,"yes","GO:0010167 GO:0015706 GO:0006569 GO:0009684 GO:0003674 GO:0005886","AT5G45480.1","Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45540.1); Has 1371 Blast hits to 876 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1371; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G45490","Chr5:18425836-18432397","cs","ls","OK",69.0237,0,"-1.79769e+308","-1.79769e+308",{"v":1.22e-11,"d":"1.22E-11"},{"v":7.58e-09,"d":"7.58E-09"},"yes","GO:0005575 GO:0043531","AT5G45490.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G45440.1); Has 3977 Blast hits to 3964 proteins in 194 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 8; Plants - 3946; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).","protein_coding"]
["AT5G45500","Chr5:18432457-18435469","cs","ls","OK",23.0441,0.923617,-4.64096,7.78217,{"v":7.11e-15,"d":"7.11E-15"},{"v":6.72e-12,"d":"6.72E-12"},"yes","GO:0045087 GO:0009617 GO:0003674 GO:0005886","AT5G45500.1","RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G45510","Chr5:18444656-18449446","cs","ls","OK",47.6379,5.02399,-3.24521,9.41624,0,0,"yes","GO:0006952 GO:0005829 GO:0005886","AT5G45510.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: defense response; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G19050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G45840","Chr5:18593916-18597995","cs","ls","OK",3.06091,0.518676,-2.56106,3.67444,0.000238375,0.0105625,"yes","GO:0006468 GO:0004674 GO:0004713 GO:0007169 GO:0005524 GO:0009507","AT5G45840.2","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G18640.1).","protein_coding"]
["AT5G46220","Chr5:18738748-18742011","cs","ls","OK",3.90393,0.68146,-2.51823,3.34202,0.000831723,0.0279366,"yes","GO:0016021 GO:0006672 GO:0016757 GO:0009507","AT5G46220.1","Protein of unknown function (DUF616); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT4G38500.1); Has 226 Blast hits to 226 proteins in 19 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).","protein_coding"]
["AT5G46490","Chr5:18850775-18853843","cs","ls","OK",8.30636,0.833578,-3.31683,4.50324,{"v":6.69e-06,"d":"6.69E-06"},0.000587841,"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT5G46490.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G31540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G46510","Chr5:18860450-18867013","cs","ls","OK",7.49446,0.018145,-8.69011,7.5989,{"v":3e-14,"d":"3.00E-14"},{"v":2.59e-11,"d":"2.59E-11"},"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT5G46510.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G46520","Chr5:18867766-18872415","cs","ls","OK",3.56916,0.538548,-2.72844,4.53129,{"v":5.86e-06,"d":"5.86E-06"},0.000528988,"yes","GO:0006952 GO:0005634 GO:0005829 GO:0005515 GO:0007165","AT5G46520.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46510.1); Has 17530 Blast hits to 12991 proteins in 492 species: Archae - 6; Bacteria - 943; Metazoa - 980; Fungi - 57; Plants - 15109; Viruses - 15; Other Eukaryotes - 420 (source: NCBI BLink).","protein_coding"]
["AT5G46730","Chr5:18964011-18965068","cs","ls","OK",41.51,100.595,1.27703,-3.36186,0.000774208,0.0264523,"yes","GO:0003674 GO:0008150","AT5G46730.1","glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 448555 Blast hits to 73639 proteins in 3057 species: Archae - 1103; Bacteria - 116328; Metazoa - 161151; Fungi - 31669; Plants - 45641; Viruses - 5898; Other Eukaryotes - 86765 (source: NCBI BLink).","protein_coding"]
["AT5G46740","Chr5:18965270-18968742","cs","ls","OK",3.25266,10.0783,1.63156,-3.91158,{"v":9.17e-05,"d":"9.17E-05"},0.00498691,"yes","GO:0009165 GO:0005634 GO:0006511 GO:0004843 GO:0004221","AT5G46740.1","Encodes a ubiquitin-specific protease.","protein_coding","UBIQUITIN-SPECIFIC PROTEASE 21 (UBP21)","UBIQUITIN-SPECIFIC PROTEASE 21 (UBP21)"]
["AT5G46750","Chr5:18969748-18971932","cs","ls","OK",29.9347,69.937,1.22424,-3.91063,{"v":9.21e-05,"d":"9.21E-05"},0.00499292,"yes","GO:0009737 GO:0032312 GO:0005634 GO:0008060 GO:0008270 GO:0003677","AT5G46750.1","A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.","protein_coding","ARF-GAP DOMAIN 9 (AGD9)","ARF-GAP DOMAIN 9 (AGD9)"]
["AT5G46760","Chr5:18974230-18976009","cs","ls","OK",25.4955,58.2259,1.19142,-3.79456,0.000147904,0.00726742,"yes","GO:0009718 GO:0009753 GO:0003700 GO:0005634 GO:0006952 GO:0045893 GO:0043425","AT5G46760.1","MYC3 is a JAZ-interacting transcription factor that act together with MYC2 and MYC4 to activate JA-responses.","protein_coding","(MYC3)","(MYC3)"]
["AT5G46800","Chr5:18988630-18990772","cs","ls","OK",54.7896,21.8768,-1.3245,3.91378,{"v":9.09e-05,"d":"9.09E-05"},0.00495525,"yes","GO:0005215 GO:0015822 GO:0005743 GO:0006839 GO:0055085 GO:0009507","AT5G46800.1","Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein","protein_coding","A BOUT DE SOUFFLE (BOU)","A BOUT DE SOUFFLE (BOU)"]
["AT5G47250","Chr5:19185793-19188745","cs","ls","OK",1.41982,5.59664,1.97885,-3.84279,0.000121641,0.00622395,"yes","GO:0006952 GO:0043531 GO:0005739","AT5G47250.1","LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G47810","Chr5:19356355-19358125","cs","ls","OK",3.39679,0.430473,-2.98018,3.37075,0.000749643,0.0256771,"yes","GO:0003872 GO:0005945 GO:0006096 GO:0005524","AT5G47810.1","phosphofructokinase 2 (PFK2); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 3 (TAIR:AT4G26270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","PHOSPHOFRUCTOKINASE 2 (PFK2)","PHOSPHOFRUCTOKINASE 2 (PFK2)"]
["AT5G48090","Chr5:19484164-19488657","cs","ls","OK",0.0794868,3.07354,5.27304,-5.27884,{"v":1.3e-07,"d":"1.30E-07"},{"v":2.01e-05,"d":"2.01E-05"},"yes","GO:0005634 GO:0008270","AT5G48090.1","EDM2-like protein1 (ELP1); BEST Arabidopsis thaliana protein match is: ENHANCED DOWNY MILDEW 2 (TAIR:AT5G55390.2); Has 373 Blast hits to 351 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).","protein_coding","EDM2-LIKE PROTEIN1 (ELP1)","EDM2-LIKE PROTEIN1 (ELP1)"]
["AT5G48110","Chr5:19501156-19504357","cs","ls","OK",0.0247522,1.30653,5.72204,-3.53534,0.000407257,0.0158209,"yes","GO:0010333 GO:0000287 GO:0008152 GO:0009507","AT5G48110.1","Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G70080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G48250","Chr5:19561318-19563722","cs","ls","OK",11.4381,35.6084,1.63838,-4.61428,{"v":3.94e-06,"d":"3.94E-06"},0.00038012,"yes","GO:0007623 GO:0003700 GO:0005634 GO:0008270 GO:0005515 GO:0005886","AT5G48250.1","B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 9 (TAIR:AT3G07650.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G48350","Chr5:19593216-19594441","cs","ls","OK",0.0960151,2.78375,4.85762,-4.10859,{"v":3.98e-05,"d":"3.98E-05"},0.00246944,"yes","GO:0006139 GO:0008408 GO:0005634 GO:0003676","AT5G48350.1","Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, sperm cell, egg cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G62320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G48530","Chr5:19666836-19668830","cs","ls","OK",5.85482,0.785045,-2.89878,3.61443,0.000301006,0.0124745,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G48530.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07440.1); Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G48620","Chr5:19716475-19721452","cs","ls","OK",18.9688,6.31736,-1.58623,4.7873,{"v":1.69e-06,"d":"1.69E-06"},0.000176608,"yes","GO:0006952 GO:0043531 GO:0005886","AT5G48620.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G49360","Chr5:20011878-20016742","cs","ls","OK",30.6102,13.5663,-1.17398,3.6437,0.000268743,0.0116992,"yes","GO:0048046 GO:0005975 GO:0010214 GO:0046556 GO:0009505","AT5G49360.1","Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.","protein_coding","BETA-XYLOSIDASE 1 (BXL1)","BETA-XYLOSIDASE 1 (ATBXL1)"]
["AT5G49440","Chr5:20048238-20049597","cs","ls","OK",36.4684,0,"-1.79769e+308","-1.79769e+308",{"v":3.4e-10,"d":"3.40E-10"},{"v":1.15e-07,"d":"1.15E-07"},"yes","GO:0008150 GO:0005634 GO:0003674","AT5G49440.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G50200","Chr5:20436179-20437726","cs","ls","OK",20.3809,4.155,-2.2943,3.77037,0.000163007,0.0079701,"yes","GO:0010167 GO:0006888 GO:0015706 GO:0006612 GO:0006862 GO:0009611 GO:0009627 GO:0015112 GO:0006944 GO:0015802 GO:0015696 GO:0043090 GO:0005886 GO:0034976 GO:0043069 GO:0043269 GO:0010363","AT5G50200.3","Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.","protein_coding","WOUND-RESPONSIVE 3 (WR3)","WOUND-RESPONSIVE 3 (WR3)"]
["AT5G50565","Chr5:20580255-20584559","cs","ls","OK",24.4873,0,"-1.79769e+308","-1.79769e+308",{"v":1.75e-06,"d":"1.75E-06"},0.000182336,"yes","GO:0003674 GO:0008150","AT5G50565.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50665.2); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G50665","Chr5:20613633-20615470","cs","ls","OK",31.8613,0,"-1.79769e+308","-1.79769e+308",{"v":2.88e-06,"d":"2.88E-06"},0.000286264,"yes","GO:0003674 GO:0008150","AT5G50665.2","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50565.2).","protein_coding"]
["AT5G50770","Chr5:20646679-20648725","cs","ls","OK",0.370614,3.58304,3.27319,-3.25455,0.00113573,0.0344729,"yes","GO:0016491 GO:0005576 GO:0008152 GO:0000166","AT5G50770.1","Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.","protein_coding","HYDROXYSTEROID DEHYDROGENASE 6 (HSD6)","HYDROXYSTEROID DEHYDROGENASE 6 (HSD6)"]
["AT5G51460","Chr5:20900976-20904539","cs","ls","OK",20.2887,8.45061,-1.26355,3.28191,0.00103106,0.0323344,"yes","GO:0005634 GO:0005992 GO:0004805","AT5G51460.3","homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases","protein_coding","(ATTPPA)","TREHALOSE-6-PHOSPHATE PHOSPHATASE A (TPPA)"]
["AT5G51730","Chr5:21011417-21013657","cs","ls","OK",5.53594,0.350332,-3.98204,4.30176,{"v":1.69e-05,"d":"1.69E-05"},0.00126452,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G51730.1","RNA-binding (RRM/RBD/RNP motifs) family protein; BEST Arabidopsis thaliana protein match is: nucleolin like 2 (TAIR:AT3G18610.1); Has 148 Blast hits to 118 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","protein_coding"]
["AT5G52060","Chr5:21152213-21154244","cs","ls","OK",63.821,29.9211,-1.09287,3.50703,0.000453133,0.0171991,"yes","GO:0048767 GO:0009750 GO:0051087 GO:0005739 GO:0006833 GO:0030003 GO:0009651 GO:0070838","AT5G52060.1","A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.","protein_coding","BCL-2-ASSOCIATED ATHANOGENE 1 (BAG1)","BCL-2-ASSOCIATED ATHANOGENE 1 (ATBAG1)"]
["AT5G52310","Chr5:21240848-21243613","cs","ls","OK",20.2525,80.1574,1.98473,-6.43032,{"v":1.27e-10,"d":"1.27E-10"},{"v":4.96e-08,"d":"4.96E-08"},"yes","GO:0010150 GO:0042538 GO:0005634 GO:0009269 GO:0003674 GO:0009409 GO:0009737","AT5G52310.1","cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression","protein_coding","LOW-TEMPERATURE-INDUCED 78 (LTI78)","COLD REGULATED 78 (COR78)"]
["AT5G52882","Chr5:21433878-21438659","cs","ls","OK",31.2156,13.1687,-1.24515,3.93633,{"v":8.27e-05,"d":"8.27E-05"},0.00462071,"yes","GO:0017111 GO:0005524 GO:0005886","AT5G52882.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 40812 Blast hits to 38433 proteins in 3247 species: Archae - 1565; Bacteria - 18648; Metazoa - 4821; Fungi - 3639; Plants - 3257; Viruses - 39; Other Eukaryotes - 8843 (source: NCBI BLink).","protein_coding"]
["AT5G53970","Chr5:21910532-21912777","cs","ls","OK",8.88089,2.48162,-1.83942,3.43959,0.000582595,0.0209893,"yes","GO:0005737 GO:0004838 GO:0010189","AT5G53970.1","encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment","protein_coding","TYROSINE AMINOTRANSFERASE 7 (TAT7)","TYROSINE AMINOTRANSFERASE 7 (TAT7)"]
["AT5G54060","Chr5:21936878-21938369","cs","ls","OK",5.69998,0.986848,-2.53006,3.53156,0.000413118,0.015986,"yes","GO:0009718 GO:0009744 GO:0035252 GO:0006499 GO:0010224 GO:0009507","AT5G54060.1","Encodes a anthocyanin 3-O-glucoside: 2\"-O-xylosyl-transferase involved in anthocyanin modification that converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1->2)glucoside. Its preferred sugar donor is UDP-xylose.","protein_coding","UDP-GLUCOSE:FLAVONOID 3-O-GLUCOSYLTRANSFERASE (UF3GT)","UDP-GLUCOSE:FLAVONOID 3-O-GLUCOSYLTRANSFERASE (UF3GT)"]
["AT5G54160","Chr5:21981995-21984363","cs","ls","OK",113.117,45.5908,-1.311,4.25749,{"v":2.07e-05,"d":"2.07E-05"},0.00146191,"yes","GO:0030755 GO:0016126 GO:0030744 GO:0051555 GO:0009809 GO:0006598 GO:0009805 GO:0033799 GO:0005829 GO:0009963 GO:0009611 GO:0047763 GO:0005634 GO:0009506","AT5G54160.1","A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3?-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase","protein_coding","O-METHYLTRANSFERASE 1 (OMT1)","O-METHYLTRANSFERASE 1 (ATOMT1)"]
["AT5G54190","Chr5:21990911-21992812","cs","ls","OK",0.969611,8.02289,3.04864,-3.20736,0.00133961,0.0393668,"yes","GO:0009534 GO:0015995 GO:0009941 GO:0016630 GO:0000166 GO:0009723 GO:0055114","AT5G54190.1","light-dependent NADPH:protochlorophyllide oxidoreductase A","protein_coding","PROTOCHLOROPHYLLIDE OXIDOREDUCTASE A (PORA)","PROTOCHLOROPHYLLIDE OXIDOREDUCTASE A (PORA)"]
["AT5G54610","Chr5:22184778-22186525","cs","ls","OK",7.74137,1.95853,-1.98282,3.13157,0.00173874,0.0475422,"yes","GO:0050832 GO:0010310 GO:0010363 GO:0009862 GO:0006612 GO:0000165 GO:0009867 GO:0031348 GO:0009697 GO:0042742 GO:0005886 GO:0043069","AT5G54610.1","Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.","protein_coding","ANKYRIN (ANK)","BIAN DA 2 (BECOMING BIG IN CHINESE) (BDA1)"]
["AT5G55570","Chr5:22514474-22517929","cs","ls","OK",16.7873,59.058,1.81476,-3.25519,0.00113317,0.034448,"yes","GO:0005739","AT5G55570.1","unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G55790","Chr5:22580669-22581335","cs","ls","OK",12.2374,0.208784,-5.87315,4.9278,{"v":8.32e-07,"d":"8.32E-07"},{"v":9.65e-05,"d":"9.65E-05"},"yes","GO:0010048 GO:0003674 GO:0005739","AT5G55790.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45163.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G56380","Chr5:22838671-22841015","cs","ls","OK",3.9279,0,"-1.79769e+308","-1.79769e+308",{"v":1.01e-05,"d":"1.01E-05"},0.000800566,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G56380.1","F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G56550","Chr5:22894501-22896653","cs","ls","OK",43.404,11.8679,-1.87076,4.74043,{"v":2.13e-06,"d":"2.13E-06"},0.000215995,"yes","GO:0016607 GO:0046686 GO:0003674 GO:0006979","AT5G56550.1","Encodes OXIDATIVE STRESS 3 (OXS3)， involved in tolerance to heavy metals and oxidative stress.","protein_coding","OXIDATIVE STRESS 3 (OXS3)","OXIDATIVE STRESS 3 (ATOXS3)"]
["AT5G56910","Chr5:23022921-23024205","cs","ls","OK",9.66694,0.743299,-3.70104,4.47049,{"v":7.8e-06,"d":"7.80E-06"},0.000667736,"yes","GO:0005634 GO:0008150","AT5G56910.1","Proteinase inhibitor I25, cystatin, conserved region; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381), Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G56920.1); Has 58 Blast hits to 58 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G57110","Chr5:23109437-23117563","cs","ls","OK",8.82164,22.9291,1.37806,-3.5534,0.000380283,0.0150379,"yes","GO:0043621 GO:0070588 GO:0009624 GO:0006882 GO:0009506 GO:0005388 GO:0046872 GO:0006754 GO:0005524 GO:0005516","AT5G57110.1","Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.","protein_coding","\"AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8\" (ACA8)","\"AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8\" (AT-ACA8)"]
["AT5G57220","Chr5:23187839-23189857","cs","ls","OK",2.49974,0.318543,-2.97222,3.28508,0.00101953,0.0320739,"yes","GO:0019825 GO:0052544 GO:0010200 GO:0020037 GO:0009682 GO:0016705 GO:0009759 GO:0009723 GO:0050832 GO:0071456 GO:0002213 GO:0009055","AT5G57220.1","member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi.","protein_coding","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 2\" (CYP81F2)","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 2\" (CYP81F2)"]
["AT5G57560","Chr5:23307129-23308282","cs","ls","OK",42.7355,11.1751,-1.93515,4.88736,{"v":1.02e-06,"d":"1.02E-06"},0.000113971,"yes","GO:0009733 GO:0009664 GO:0006073 GO:0010583 GO:0005618 GO:0009741 GO:0009611 GO:0009612 GO:0016762 GO:0048046 GO:0010200 GO:0005794 GO:0004553 GO:0009409 GO:0009408 GO:0009507","AT5G57560.1","Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli","protein_coding","TOUCH 4 (TCH4)","XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 22 (XTH22)"]
["AT5G59220","Chr5:23894403-23896619","cs","ls","OK",0.382731,2.92643,2.93474,-3.24128,0.00118996,0.0357907,"yes","GO:0009733 GO:0010150 GO:0009723 GO:0042538 GO:0009753 GO:0005829 GO:0009611 GO:0004722 GO:0009658 GO:0010118 GO:0009414 GO:0005886 GO:0009409 GO:0009788 GO:0033106 GO:0005634","AT5G59220.1","highly ABA-induced PP2C gene 1 (HAI1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 2 (TAIR:AT1G07430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","HIGHLY ABA-INDUCED PP2C GENE 1 (HAI1)","SENESCENCE ASSOCIATED GENE 113 (SAG113)"]
["AT5G59320","Chr5:23928970-23929745","cs","ls","OK",1.7976,10.7218,2.5764,-3.11392,0.00184622,0.0495931,"yes","GO:0009737 GO:0006869 GO:0005618 GO:0008289 GO:0048046 GO:0009414 GO:0009409 GO:0042538","AT5G59320.1","Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.","protein_coding","LIPID TRANSFER PROTEIN 3 (LTP3)","LIPID TRANSFER PROTEIN 3 (LTP3)"]
["AT5G60100","Chr5:24197997-24201404","cs","ls","OK",4.90162,26.4763,2.43337,-5.53373,{"v":3.13e-08,"d":"3.13E-08"},{"v":5.66e-06,"d":"5.66E-06"},"yes","GO:0032091 GO:0016310 GO:0000156 GO:0006333 GO:0006355 GO:0042752 GO:0005515 GO:0000160 GO:0005634","AT5G60100.2","Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.","protein_coding","PSEUDO-RESPONSE REGULATOR 3 (PRR3)","PSEUDO-RESPONSE REGULATOR 3 (PRR3)"]
["AT5G60900","Chr5:24498466-24501494","cs","ls","OK",4.41077,0.528193,-3.06189,4.21724,{"v":2.47e-05,"d":"2.47E-05"},0.00166988,"yes","GO:0004674 GO:0006468 GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0030246 GO:0031348 GO:0009867 GO:0004713 GO:0005886 GO:0035304 GO:0005524","AT5G60900.1","Encodes a receptor-like protein kinase.","protein_coding","RECEPTOR-LIKE PROTEIN KINASE 1 (RLK1)","RECEPTOR-LIKE PROTEIN KINASE 1 (RLK1)"]
["AT5G61380","Chr5:24675063-24678550","cs","ls","OK",10.9793,23.435,1.09388,-3.33326,0.000858359,0.0283892,"yes","GO:0009639 GO:0048574 GO:0003700 GO:0000160 GO:0000156 GO:0010629 GO:0006355 GO:0042752 GO:0005515 GO:0005634 GO:0010031","AT5G61380.1","Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.","protein_coding","TIMING OF CAB EXPRESSION 1 (TOC1)","TIMING OF CAB EXPRESSION 1 (TOC1)"]
["AT5G61600","Chr5:24766385-24767430","cs","ls","OK",22.7456,8.33024,-1.44916,3.2607,0.00111138,0.0339939,"yes","GO:0010200 GO:0003700 GO:0005634 GO:0009611 GO:0009612 GO:0050832 GO:0045893 GO:0005515 GO:0009693","AT5G61600.1","encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.","protein_coding","ETHYLENE RESPONSE FACTOR 104 (ERF104)","ETHYLENE RESPONSE FACTOR 104 (ERF104)"]
["AT5G61820","Chr5:24834316-24836694","cs","ls","OK",10.4097,32.3232,1.63464,-4.42056,{"v":9.84e-06,"d":"9.84E-06"},0.000788009,"yes","GO:0005773 GO:0009738 GO:0009610 GO:0003674 GO:0046482 GO:0009507","AT5G61820.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G63020","Chr5:25281713-25286002","cs","ls","OK",15.6564,0.405242,-5.27183,5.16213,{"v":2.44e-07,"d":"2.44E-07"},{"v":3.41e-05,"d":"3.41E-05"},"yes","GO:0006952 GO:0005634 GO:0006499 GO:0043531","AT5G63020.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 14258 Blast hits to 13662 proteins in 567 species: Archae - 8; Bacteria - 542; Metazoa - 1192; Fungi - 130; Plants - 12234; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).","protein_coding"]
["AT5G64640","Chr5:25836726-25839199","cs","ls","OK",4.98764,12.3831,1.31194,-3.20715,0.00134059,0.0393668,"yes","GO:0042545 GO:0030599 GO:0005886 GO:0004857 GO:0009505 GO:0009507","AT5G64640.1","Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G65660","Chr5:26245248-26246379","cs","ls","OK",90.6763,36.5577,-1.31055,3.72834,0.000192742,0.00906663,"yes","GO:0008150 GO:0005634 GO:0003674 GO:0005886","AT5G65660.1","hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G66052","Chr5:26416125-26416924","cs","ls","OK",10.4582,0,"-1.79769e+308","-1.79769e+308",{"v":7.48e-05,"d":"7.48E-05"},0.00426796,"yes","GO:0005575 GO:0003674 GO:0008150","AT5G66052.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G66380","Chr5:26513523-26515695","cs","ls","OK",2.49782,12.5549,2.32951,-3.84825,0.000118963,0.00620008,"yes","GO:0015884 GO:0009941 GO:0008517 GO:0005743","AT5G66380.1","Encodes a folate transporter that is located in the chloroplast envelope and is able to mediate exogenous folate uptake when expressed in E. coli. However, this is not the sole folate transporter for chloroplasts as null mutants of this gene have no discernible phenotype when grown under folate-sufficient conditions and contained wild-type levels of folates in leaves.","protein_coding","FOLATE TRANSPORTER 1 (FOLT1)","FOLATE TRANSPORTER 1 (FOLT1)"]
["AT5G67060","Chr5:26766127-26767250","cs","ls","OK",0.504177,3.8264,2.92399,-3.15091,0.00162762,0.0455169,"yes","GO:0003700 GO:0006355 GO:0005634 GO:0010500 GO:0048462","AT5G67060.1","HECATE 1 (HEC1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G50330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","HECATE 1 (HEC1)","HECATE 1 (HEC1)"]

{"sheet":"higher in Ler","index":1,"n_rows":274,"n_cols":18,"rows_kept":274,"flags":["formulas_cached_only"]}
["gene","locus","sample_1","sample_2","status","value_1","value_2","log2(fold_change)","test_stat","p_value","q_value","significant","GO","Representative Gene Model Name","Gene Description","Gene Model Type","Primary Gene Symbol"]
["AT1G02300","Chr1:453287-455463","cs","ls","OK",23.6433,56.5904,1.25913,-3.76754,0.000164861,0.00802124,"yes","GO:0004197 GO:0006508 GO:0050790 GO:0005576","AT1G02300.1","Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02305.1); Has 7127 Blast hits to 7085 proteins in 649 species: Archae - 51; Bacteria - 96; Metazoa - 3215; Fungi - 4; Plants - 1554; Viruses - 146; Other Eukaryotes - 2061 (source: NCBI BLink).","protein_coding"]
["AT1G02770","Chr1:604872-606693","cs","ls","OK",0.129625,7.3588,5.82705,-5.43617,{"v":5.44e-08,"d":"5.44E-08"},{"v":9.4e-06,"d":"9.40E-06"},"yes","GO:0008150 GO:0005634 GO:0003674","AT1G02770.1","Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G19060.1); Has 209 Blast hits to 208 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 209; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G07050","Chr1:2164187-2165239","cs","ls","OK",28.7992,80.1939,1.47746,-4.23463,{"v":2.29e-05,"d":"2.29E-05"},0.00156205,"yes","GO:0003674 GO:0005634 GO:0007623","AT1G07050.1","CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G25990.1); Has 1772 Blast hits to 1772 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1711; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).","protein_coding"]
["AT1G07430","Chr1:2280834-2282828","cs","ls","OK",0.170212,1.98507,3.54379,-3.45521,0.000549859,0.0199913,"yes","GO:0008287 GO:0004722 GO:0048838 GO:0005886 GO:0009939 GO:0009788 GO:0010030","AT1G07430.1","highly ABA-induced PP2C gene 2 (HAI2); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 3 (TAIR:AT2G29380.1); Has 6753 Blast hits to 6737 proteins in 407 species: Archae - 6; Bacteria - 193; Metazoa - 1700; Fungi - 794; Plants - 2782; Viruses - 7; Other Eukaryotes - 1271 (source: NCBI BLink).","protein_coding","HIGHLY ABA-INDUCED PP2C GENE 2 (HAI2)","HIGHLY ABA-INDUCED PP2C GENE 2 (HAI2)"]
["AT1G07610","Chr1:2341541-2342123","cs","ls","OK",48.4691,116.751,1.2683,-3.37476,0.000738812,0.0255064,"yes","GO:0010167 GO:0005507 GO:0022626 GO:0015706 GO:0046688","AT1G07610.1","one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance.","protein_coding","METALLOTHIONEIN 1C (MT1C)","METALLOTHIONEIN 1C (MT1C)"]
["AT1G07780","Chr1:2410055-2412677","cs","ls","OK",13.0549,31.6387,1.2771,-3.16018,0.00157669,0.0444587,"yes","GO:0004640 GO:0000162 GO:0009507","AT1G07780.3","Encodes phosphoribosylanthranilate isomerase which catalyzes the third step of the tryptophan biosynthetic pathway. Member of gene family.","protein_coding","PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1 (PAI1)","TRANSIENT RECEPTOR POTENTIAL 6 (TRP6)"]
["AT1G08890","Chr1:2848347-2852270","cs","ls","OK",1.9145,6.63619,1.79338,-3.15645,0.00159704,0.0449643,"yes","GO:0016021 GO:0009507 GO:0005351 GO:0055085 GO:0005886","AT1G08890.1","Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08900.2); Has 22268 Blast hits to 21798 proteins in 1696 species: Archae - 379; Bacteria - 7327; Metazoa - 4739; Fungi - 6227; Plants - 2471; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink).","protein_coding"]
["AT1G09240","Chr1:2984880-2986130","cs","ls","OK",3.30907,15.2293,2.20235,-4.1709,{"v":3.03e-05,"d":"3.03E-05"},0.00194911,"yes","GO:0030410 GO:0010233 GO:0030418 GO:0009860 GO:0009555","AT1G09240.1","Encodes a nicotianamine synthase.","protein_coding","NICOTIANAMINE SYNTHASE 3 (NAS3)","ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3 (ATNAS3)"]
["AT1G09420","Chr1:3038461-3041873","cs","ls","OK",3.38697,17.6871,2.38463,-5.55647,{"v":2.75e-08,"d":"2.75E-08"},{"v":5.06e-06,"d":"5.06E-06"},"yes","GO:0004345 GO:0050661 GO:0006006 GO:0055114 GO:0009507","AT1G09420.2","Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.","protein_coding","GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4 (G6PD4)","GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4 (G6PD4)"]
["AT1G09500","Chr1:3066698-3068598","cs","ls","OK",5.67443,20.5888,1.85931,-3.27127,0.00107064,0.0331898,"yes","GO:0050662 GO:0045551 GO:0009809 GO:0004022 GO:0000166","AT1G09500.1","similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase","protein_coding"]
["AT1G10370","Chr1:3397080-3398358","cs","ls","OK",45.4826,98.5804,1.11598,-3.48016,0.00050111,0.0185935,"yes","GO:0004364 GO:0009407 GO:0009704 GO:0015824 GO:0006749 GO:0009651 GO:0048527 GO:0060416 GO:0009507","AT1G10370.1","Encodes GSTU17 (Glutathione S-Transferase U17). Functions as a negative component of stress-mediated signal transduction pathways in drought and salt stress responses.","protein_coding","EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9)","GLUTATHIONE S-TRANSFERASE 30 (GST30)"]
["AT1G10380","Chr1:3400605-3402324","cs","ls","OK",4.28889,12.9624,1.59566,-3.11148,0.00186153,0.0498694,"yes","GO:0003674 GO:0005576 GO:0008150","AT1G10380.1","Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 280 Blast hits to 279 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G10585","Chr1:3493939-3495144","cs","ls","OK",0.35669,3.87459,3.4413,-3.20496,0.00135081,0.0395781,"yes","GO:0005737 GO:0003700 GO:0005634 GO:0006865 GO:0006355","AT1G10585.1","basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1); Has 97 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G10760","Chr1:3581033-3590928","cs","ls","OK",95.9295,184.717,0.945272,-3.13951,0.00169228,0.0466576,"yes","GO:0009941 GO:0009631 GO:0007623 GO:0009570 GO:0005983 GO:0009610 GO:0005739 GO:0050521 GO:0005515 GO:0016310 GO:0010353 GO:0005524 GO:0019252","AT1G10760.1","Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.","protein_coding","STARCH EXCESS 1 (SEX1)","STARCH EXCESS 1 (SEX1)"]
["AT1G11210","Chr1:3755676-3756998","cs","ls","OK",3.50448,12.2552,1.80612,-3.11684,0.00182799,0.0491935,"yes","GO:0009409 GO:0009737 GO:0003674 GO:0006979 GO:0009414","AT1G11210.1","Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G11220.1); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT1G12220","Chr1:4144571-4147911","cs","ls","OK",3.25593,0,"-1.79769e+308","-1.79769e+308",0.000201472,0.00925793,"yes","GO:0005622 GO:0009816 GO:0006499 GO:0000166 GO:0005515 GO:0005886 GO:0009626","AT1G12220.1","Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.","protein_coding","RESISTANT TO P. SYRINGAE 5 (RPS5)","RESISTANT TO P. SYRINGAE 5 (RPS5)"]
["AT1G12330","Chr1:4194657-4196749","cs","ls","OK",7.99796,27.2796,1.77012,-4.57597,{"v":4.74e-06,"d":"4.74E-06"},0.000439709,"yes","GO:0008150 GO:0009507","AT1G12330.1","unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).","protein_coding"]
["AT1G12350","Chr1:4198412-4200802","cs","ls","OK",7.21362,29.5522,2.03447,-4.97939,{"v":6.38e-07,"d":"6.38E-07"},{"v":7.63e-05,"d":"7.63E-05"},"yes","GO:0016020 GO:0004632 GO:0009507 GO:0015937","AT1G12350.1","At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4?-phospho-N-pantothenoylcysteine (PPC)","protein_coding","4-PHOSPHO-PANTO-THENOYLCYSTEINE SYNTHETASE (COAB)","4-PHOSPHO-PANTO-THENOYLCYSTEINE SYNTHETASE (ATCOAB)"]
["AT1G15890","Chr1:5461316-5464223","cs","ls","OK",1.70108,0,"-1.79769e+308","-1.79769e+308",0.000310051,0.0127693,"yes","GO:0006952 GO:0005634 GO:0006499 GO:0043531","AT1G15890.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).","protein_coding"]
["AT1G17170","Chr1:5869845-5870840","cs","ls","OK",0.907532,6.71336,2.88701,-3.33867,0.000841807,0.0281798,"yes","GO:0005737 GO:0010583 GO:0004364 GO:0080129 GO:0006635 GO:0043161 GO:0009407 GO:0051788 GO:0043295","AT1G17170.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 24 (GSTU24)","GLUTATHIONE S-TRANSFERASE TAU 24 (ATGSTU24)"]
["AT1G20590","Chr1:7131165-7132183","cs","ls","OK",0.647095,9.26743,3.84012,-3.84475,0.000120673,0.00621005,"yes","GO:0019901 GO:0016538 GO:0005634 GO:0000079","AT1G20590.1","Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 3281 Blast hits to 3278 proteins in 328 species: Archae - 0; Bacteria - 0; Metazoa - 1609; Fungi - 468; Plants - 793; Viruses - 0; Other Eukaryotes - 411 (source: NCBI BLink).","protein_coding"]
["AT1G21120","Chr1:7395227-7396773","cs","ls","OK",4.96793,26.6951,2.42586,-5.24051,{"v":1.6e-07,"d":"1.60E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0042343 GO:0046983 GO:0005634 GO:0008171 GO:0005829","AT1G21120.1","O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21110.1); Has 3310 Blast hits to 3305 proteins in 577 species: Archae - 1; Bacteria - 921; Metazoa - 104; Fungi - 640; Plants - 1542; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).","protein_coding","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 2 (IGMT2)","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 2 (IGMT2)"]
["AT1G21460","Chr1:7511849-7513361","cs","ls","OK",19.2677,53.006,1.45997,-4.04093,{"v":5.32e-05,"d":"5.32E-05"},0.00318916,"yes","GO:0008150 GO:0005783 GO:0005887 GO:0051119","AT1G21460.1","Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT5G53190.1); Has 988 Blast hits to 930 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 221; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).","protein_coding","(SWEET1)","(SWEET1)"]
["AT1G21680","Chr1:7613004-7615339","cs","ls","OK",16.5158,34.9451,1.08124,-3.38729,0.000705878,0.0245401,"yes","GO:0019243 GO:0005576 GO:0003674 GO:0009505 GO:0005774","AT1G21680.1","DPP6 N-terminal domain-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi - 60; Plants - 122; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink).","protein_coding"]
["AT1G23935","Chr1:8461908-8465943","cs","ls","OK",3.07429,9.93209,1.69184,-3.72902,0.000192226,0.00906663,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G23935.1","CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19515.2); Has 219 Blast hits to 219 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).","protein_coding"]
["AT1G23940","Chr1:8466093-8469346","cs","ls","OK",1.56939,8.16511,2.37927,-3.75173,0.000175616,0.00844106,"yes","GO:0006886 GO:0030117 GO:0016192","AT1G23940.1","ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: gamma-adaptin 1 (TAIR:AT1G23900.2); Has 2143 Blast hits to 1692 proteins in 293 species: Archae - 0; Bacteria - 0; Metazoa - 982; Fungi - 444; Plants - 311; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).","protein_coding"]
["AT1G24388","Chr1:8648098-8648995","cs","ls","OK",0,34.2616,"1.79769e+308","1.79769e+308",{"v":3.35e-05,"d":"3.35E-05"},0.00212207,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G24388.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G27540","Chr1:9566331-9567906","cs","ls","OK",11.9505,159.442,3.73788,-9.89962,0,0,"yes","GO:0008150 GO:0005634 GO:0003674 GO:0005739","AT1G27540.1","Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 275 Blast hits to 268 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G27570","Chr1:9575537-9582376","cs","ls","OK",0,3.89198,"1.79769e+308","1.79769e+308",{"v":1.31e-05,"d":"1.31E-05"},0.00100353,"yes","GO:0005737 GO:0016773 GO:0005634","AT1G27570.1","phosphatidylinositol 3- and 4-kinase family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27590.1); Has 394 Blast hits to 394 proteins in 69 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 2; Plants - 290; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).","protein_coding"]
["AT1G27580","Chr1:9589932-9591075","cs","ls","OK",10.8294,148.311,3.77561,-9.89756,0,0,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G27580.1","Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27540.1); Has 231 Blast hits to 231 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 231; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G28610","Chr1:10053616-10055731","cs","ls","OK",18.111,75.1207,2.05235,-6.21356,{"v":5.18e-10,"d":"5.18E-10"},{"v":1.61e-07,"d":"1.61E-07"},"yes","GO:0004091 GO:0005576 GO:0016298 GO:0006629","AT1G28610.2","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G27360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G31690","Chr1:11343979-11347767","cs","ls","OK",18.4311,38.8304,1.07504,-3.33629,0.000849057,0.0282322,"yes","GO:0005507 GO:0009308 GO:0008131 GO:0048038 GO:0055114 GO:0009507","AT1G31690.1","Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G33930","Chr1:12323887-12327084","cs","ls","OK",4.51491,17.564,1.95986,-3.53388,0.000409499,0.0158769,"yes","GO:0009617 GO:0005739 GO:0005525","AT1G33930.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; EXPRESSED IN: leaf lamina base, pedicel, petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G33900.1); Has 1162 Blast hits to 1017 proteins in 94 species: Archae - 3; Bacteria - 57; Metazoa - 775; Fungi - 10; Plants - 211; Viruses - 2; Other Eukaryotes - 104 (source: NCBI BLink).","protein_coding"]
["AT1G35320","Chr1:12959056-12962853","cs","ls","OK",2.10953,0,"-1.79769e+308","-1.79769e+308",0.00141917,0.0408883,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G35320.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30160.1); Has 9 Blast hits to 9 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G45165","Chr1:17090676-17091464","cs","ls","OK",10.1014,0,"-1.79769e+308","-1.79769e+308",0.000199063,0.00923273,"yes","GO:0008150 GO:0003674 GO:0005739","AT1G45165.1","Expressed protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G48700","Chr1:18010728-18012871","cs","ls","OK",0,3.70538,"1.79769e+308","1.79769e+308",0.00121387,0.0363446,"yes","GO:0005575 GO:0031418 GO:0005506 GO:0016705 GO:0055114","AT1G48700.1","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G43660.1); Has 364 Blast hits to 363 proteins in 61 species: Archae - 0; Bacteria - 16; Metazoa - 230; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).","protein_coding"]
["AT1G50290","Chr1:18627558-18628434","cs","ls","OK",5.81874,66.1085,3.50606,-7.63316,{"v":2.29e-14,"d":"2.29E-14"},{"v":2.06e-11,"d":"2.06E-11"},"yes","GO:0005829 GO:0003674 GO:0006979 GO:0005739","AT1G50290.1","unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G51430","Chr1:19068240-19069776","cs","ls","OK",7.01306,0,"-1.79769e+308","-1.79769e+308",0.000298665,0.0124034,"yes","GO:0008150 GO:0003674 GO:0009507","AT1G51430.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits to 13 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G52040","Chr1:19350374-19352782","cs","ls","OK",4.61387,17.1196,1.8916,-4.41401,{"v":1.01e-05,"d":"1.01E-05"},0.000802515,"yes","GO:0006952 GO:0005773 GO:0005634 GO:0005576","AT1G52040.1","Encodes myrosinase-binding protein expressed in flowers.","protein_coding","MYROSINASE-BINDING PROTEIN 1 (MBP1)","MYROSINASE-BINDING PROTEIN 1 (MBP1)"]
["AT1G52100","Chr1:19383121-19385602","cs","ls","OK",7.93559,0,"-1.79769e+308","-1.79769e+308",{"v":7.18e-07,"d":"7.18E-07"},{"v":8.44e-05,"d":"8.44E-05"},"yes","GO:0003674 GO:0016020 GO:0008150","AT1G52100.1","Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: shoot, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G35940.1); Has 1742 Blast hits to 773 proteins in 43 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 4; Plants - 1729; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding"]
["AT1G52347","Chr1:19496505-19497703","cs","ls","OK",9.15632,0,"-1.79769e+308","-1.79769e+308",0.000586961,0.0211083,"yes","GO:0005575 GO:0003674 GO:0008150","AT1G52347.1","Unknown gene","other_rna"]
["AT1G52570","Chr1:19583939-19587050","cs","ls","OK",0.828725,3.78457,2.19117,-3.41784,0.00063121,0.0223753,"yes","GO:0009941 GO:0016020 GO:0005509 GO:0046470 GO:0004630","AT1G52570.1","member of C2-PLD subfamily","protein_coding","PHOSPHOLIPASE D ALPHA 2 (PLDALPHA2)","PHOSPHOLIPASE D ALPHA 2 (PLDALPHA2)"]
["AT1G52590","Chr1:19587636-19590273","cs","ls","OK",26.2952,67.256,1.35487,-3.72274,0.000197071,0.00920483,"yes","GO:0008150 GO:0010287 GO:0003674","AT1G52590.1","Putative thiol-disulphide oxidoreductase DCC; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative thiol-disulphide oxidoreductase DCC (InterPro:IPR007263); BEST Arabidopsis thaliana protein match is: Putative thiol-disulphide oxidoreductase DCC (TAIR:AT1G24095.1); Has 955 Blast hits to 955 proteins in 365 species: Archae - 5; Bacteria - 640; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).","protein_coding"]
["AT1G52690","Chr1:19619744-19623461","cs","ls","OK",0.939557,10.0141,3.41391,-3.6659,0.000246468,0.0108484,"yes","GO:0009830 GO:0005575 GO:0009793 GO:0003674","AT1G52690.1","Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT3G15670.1); Has 2929 Blast hits to 1441 proteins in 420 species: Archae - 10; Bacteria - 766; Metazoa - 298; Fungi - 136; Plants - 1347; Viruses - 16; Other Eukaryotes - 356 (source: NCBI BLink).","protein_coding","LATE EMBRYOGENESIS ABUNDANT 7 (LEA7)","LATE EMBRYOGENESIS ABUNDANT 7 (LEA7)"]
["AT1G52890","Chr1:19697003-19698482","cs","ls","OK",0.456372,4.12404,3.17578,-3.67716,0.000235846,0.0104973,"yes","GO:0009733 GO:0010286 GO:0042538 GO:0010363 GO:0009863 GO:0005634 GO:0006612 GO:0009867 GO:0009611 GO:0009723 GO:0003700 GO:0006355 GO:0005515 GO:0009414 GO:0009409 GO:0009738 GO:0007275","AT1G52890.1","encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.","protein_coding","NAC DOMAIN CONTAINING PROTEIN 19 (NAC019)","NAC DOMAIN CONTAINING PROTEIN 19 (NAC019)"]
["AT1G52905","Chr1:19706084-19706706","cs","ls","OK",13.0576,0,"-1.79769e+308","-1.79769e+308",0.00149646,0.0427428,"yes","GO:0008150 GO:0003674 GO:0009507","AT1G52905.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27565.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G52990","Chr1:19740502-19743449","cs","ls","OK",0.820517,5.5555,2.75931,-3.31687,0.000910325,0.0295759,"yes","GO:0006662 GO:0015035 GO:0045454 GO:0003676 GO:0009055","AT1G52990.1","thioredoxin family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G65005.1); Has 15228 Blast hits to 15210 proteins in 2870 species: Archae - 230; Bacteria - 9375; Metazoa - 871; Fungi - 596; Plants - 1211; Viruses - 5; Other Eukaryotes - 2940 (source: NCBI BLink).","protein_coding"]
["AT1G53470","Chr1:19958586-19961578","cs","ls","OK",0.791352,4.31693,2.44762,-3.9529,{"v":7.72e-05,"d":"7.72E-05"},0.0043666,"yes","GO:0005634 GO:0055085 GO:0005886","AT1G53470.1","mechanosensitive channel of small conductance-like 4 (MSL4); INVOLVED IN: transmembrane transport; LOCATED IN: plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 5 (TAIR:AT3G14810.1); Has 3267 Blast hits to 3247 proteins in 1053 species: Archae - 163; Bacteria - 2328; Metazoa - 1; Fungi - 210; Plants - 229; Viruses - 0; Other Eukaryotes - 336 (source: NCBI BLink).","protein_coding","MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4 (MSL4)","MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4 (MSL4)"]
["AT1G53830","Chr1:20098521-20100889","cs","ls","OK",0.0241452,1.37313,5.82959,-3.62143,0.000292977,0.012244,"yes","GO:0042545 GO:0004857 GO:0005576 GO:0009505 GO:0030599","AT1G53830.1","encodes a pectin methylesterase","protein_coding","PECTIN METHYLESTERASE 2 (PME2)","PECTIN METHYLESTERASE 2 (PME2)"]
["AT1G54040","Chr1:20170714-20173949","cs","ls","OK",16.8463,1594.16,6.56422,-17.7212,0,0,"yes","GO:0005737 GO:0010150 GO:0009753 GO:0005634 GO:0019762 GO:0042742 GO:0005515 GO:0030234","AT1G54040.2","Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.","protein_coding","EPITHIOSPECIFIER PROTEIN (ESP)","(TASTY)"]
["AT1G57590","Chr1:21327359-21329763","cs","ls","OK",0.751965,4.61242,2.61679,-3.48137,0.000498859,0.0185446,"yes","GO:0004091 GO:0005576 GO:0008150","AT1G57590.1","Pectinacetylesterase family protein; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G26670.1); Has 541 Blast hits to 533 proteins in 91 species: Archae - 0; Bacteria - 38; Metazoa - 118; Fungi - 0; Plants - 298; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).","protein_coding"]
["AT1G57660","Chr1:21355519-21356537","cs","ls","OK",405.699,888.078,1.13027,-3.8453,0.000120403,0.00621005,"yes","GO:0003735 GO:0005840 GO:0006412","AT1G57660.1","Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: guard cell, juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57860.1); Has 1438 Blast hits to 1438 proteins in 382 species: Archae - 215; Bacteria - 0; Metazoa - 706; Fungi - 180; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).","protein_coding"]
["AT1G57860","Chr1:21429897-21430865","cs","ls","OK",289.938,677.119,1.22366,-4.14233,{"v":3.44e-05,"d":"3.44E-05"},0.00217343,"yes","GO:0003735 GO:0006412 GO:0022625","AT1G57860.1","Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57660.1); Has 1436 Blast hits to 1436 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 706; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).","protein_coding"]
["AT1G58270","Chr1:21612115-21614117","cs","ls","OK",17.7404,0,"-1.79769e+308","-1.79769e+308",{"v":2.25e-09,"d":"2.25E-09"},{"v":5.95e-07,"d":"5.95E-07"},"yes","GO:0005737 GO:0003674 GO:0008150 GO:0009506","AT1G58270.1","ZW9 mRNA, complete cds","protein_coding","(ZW9)","(ZW9)"]
["AT1G60590","Chr1:22314169-22316970","cs","ls","OK",6.76781,19.0191,1.49069,-3.95521,{"v":7.65e-05,"d":"7.65E-05"},0.00433824,"yes","GO:0016556 GO:0005576 GO:0005975 GO:0004650","AT1G60590.1","Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).","protein_coding"]
["AT1G61640","Chr1:22746371-22749184","cs","ls","OK",3.82207,9.86703,1.36826,-3.19181,0.00141387,0.0407945,"yes","GO:0016772 GO:0005886","AT1G61640.1","Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G11390.1); Has 9331 Blast hits to 9278 proteins in 1808 species: Archae - 122; Bacteria - 4378; Metazoa - 406; Fungi - 512; Plants - 679; Viruses - 16; Other Eukaryotes - 3218 (source: NCBI BLink).","protein_coding"]
["AT1G61800","Chr1:22824439-22826774","cs","ls","OK",1.35393,5.8405,2.10894,-3.24665,0.00116771,0.0353356,"yes","GO:0015297 GO:0015760 GO:0009749 GO:0015714 GO:0005774 GO:0016021 GO:0009624 GO:0005315 GO:0009744 GO:0015713 GO:0010109 GO:0015152 GO:0015120 GO:0009643 GO:0055085 GO:0009507","AT1G61800.1","glucose6-Phosphate/phosphate transporter 2. Expression is upregulated in the shoot of cax1/cax3 mutant.","protein_coding","GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2 (GPT2)","GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2 (GPT2)"]
["AT1G63390","Chr1:23506506-23506983","cs","ls","OK",0.25891,17.0699,6.04286,-3.76662,0.000165473,0.00803129,"yes","GO:0005575 GO:0050661 GO:0050660 GO:0004499 GO:0055114","AT1G63390.1","FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adrenodoxin reductase (InterPro:IPR000759), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G62600.1); Has 6595 Blast hits to 6589 proteins in 1381 species: Archae - 54; Bacteria - 3312; Metazoa - 689; Fungi - 445; Plants - 357; Viruses - 0; Other Eukaryotes - 1738 (source: NCBI BLink).","protein_coding"]
["AT1G63540","Chr1:23566957-23569495","cs","ls","OK",0,1.7321,"1.79769e+308","1.79769e+308",0.000890139,0.0291586,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G63540.1","hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63530.1); Has 23394 Blast hits to 12215 proteins in 815 species: Archae - 17; Bacteria - 3216; Metazoa - 8302; Fungi - 5746; Plants - 1148; Viruses - 308; Other Eukaryotes - 4657 (source: NCBI BLink).","protein_coding"]
["AT1G64940","Chr1:24123788-24125324","cs","ls","OK",0.233699,2.84749,3.60697,-3.57744,0.00034698,0.0139998,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT1G64940.1","member of CYP89A","protein_coding","\"CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 6\" (CYP89A6)","\"CYTOCHROME P450, FAMILY 87, SUBFAMILY A, POLYPEPTIDE 6\" (CYP89A6)"]
["AT1G66100","Chr1:24605670-24606537","cs","ls","OK",243.688,0,"-1.79769e+308","-1.79769e+308",{"v":3.85e-12,"d":"3.85E-12"},{"v":2.73e-09,"d":"2.73E-09"},"yes","GO:0006952 GO:0005576 GO:0050827","AT1G66100.1","Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.","protein_coding"]
["AT1G66700","Chr1:24873290-24874758","cs","ls","OK",0.123041,1.85489,3.91411,-3.1428,0.00167339,0.0463298,"yes","GO:0008757 GO:0005634","AT1G66700.1","A member of the Arabidopsis SABATH methyltransferase gene family. Encodes PXMT1, a methyltransferase that methylates 1,7-paraxanthine.","protein_coding","(PXMT1)","(PXMT1)"]
["AT1G67120","Chr1:25069561-25095526","cs","ls","OK",4.61322,9.20233,0.996223,-3.31871,0.000904328,0.0294292,"yes","GO:0009553 GO:0009941 GO:0007010 GO:0005634 GO:0010498 GO:0009506 GO:0016887 GO:0008134 GO:0005524 GO:0006094","AT1G67120.1","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G68050","Chr1:25508675-25510889","cs","ls","OK",10.6257,51.3185,2.27193,-6.63042,{"v":3.35e-11,"d":"3.35E-11"},{"v":1.71e-08,"d":"1.71E-08"},"yes","GO:0007623 GO:0005634 GO:0009637 GO:0006355 GO:0006511 GO:0005515 GO:0004842 GO:0009911","AT1G68050.1","Encodes FKF1, a flavin-binding kelch repeat F box protein, is clock-controlled, regulates transition to flowering. Forms a complex with GI on the CO promoter to regulate CO expression.","protein_coding","\"FLAVIN-BINDING, KELCH REPEAT, F BOX 1\" (FKF1)","\"FLAVIN-BINDING, KELCH REPEAT, F BOX 1\" (FKF1)"]
["AT1G69720","Chr1:26226865-26228580","cs","ls","OK",4.58238,24.0677,2.39293,-3.89759,{"v":9.72e-05,"d":"9.72E-05"},0.00522668,"yes","GO:0004392 GO:0006788 GO:0055114 GO:0020037 GO:0009507","AT1G69720.1","Encodes a member (HO3) of the heme oxygenase family.","protein_coding","HEME OXYGENASE 3 (ho3)","HEME OXYGENASE 3 (ho3)"]
["AT1G69870","Chr1:26316026-26320220","cs","ls","OK",15.0698,36.7358,1.28552,-3.99501,{"v":6.47e-05,"d":"6.47E-05"},0.00380688,"yes","GO:0019761 GO:0006857 GO:0080055 GO:0080054 GO:0005886","AT1G69870.1","Encodes a low affinity nitrate transporter NRT1.7. Expressed in phloem. Responsible for source-to-sink remobilization of nitrate.","protein_coding","NITRATE TRANSPORTER 1.7 (NRT1.7)","NITRATE TRANSPORTER 1.7 (NRT1.7)"]
["AT1G69880","Chr1:26321478-26322993","cs","ls","OK",0.232322,4.77204,4.36041,-3.63454,0.000278476,0.0118565,"yes","GO:0005737 GO:0000280 GO:0006499 GO:0006662 GO:0007000 GO:0015035 GO:0045454 GO:0009055","AT1G69880.1","thioredoxin H-type 8 (TH8); INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 7 (TAIR:AT1G59730.1); Has 17541 Blast hits to 17273 proteins in 2948 species: Archae - 242; Bacteria - 9916; Metazoa - 1698; Fungi - 801; Plants - 1602; Viruses - 12; Other Eukaryotes - 3270 (source: NCBI BLink).","protein_coding","THIOREDOXIN H-TYPE 8 (TH8)","THIOREDOXIN H-TYPE 8 (TH8)"]
["AT1G73260","Chr1:27547273-27548190","cs","ls","OK",0.818705,8.39274,3.35773,-3.94126,{"v":8.11e-05,"d":"8.11E-05"},0.0045452,"yes","GO:0010167 GO:0009751 GO:0015706 GO:0042542 GO:0005739 GO:0012501 GO:0005576 GO:0042742 GO:0004866 GO:0009651","AT1G73260.1","Encodes a trypsin inhibitor involved in modulating programmed cell death in plant-pathogen interactions.","protein_coding","KUNITZ TRYPSIN INHIBITOR 1 (KTI1)","KUNITZ TRYPSIN INHIBITOR 1 (KTI1)"]
["AT1G73860","Chr1:27770985-27776857","cs","ls","OK",0.239747,1.46611,2.6124,-3.15427,0.00160901,0.0451774,"yes","GO:0007018 GO:0005524 GO:0003777","AT1G73860.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: petal, sepal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G18410.1); Has 138507 Blast hits to 76202 proteins in 2961 species: Archae - 1220; Bacteria - 20098; Metazoa - 63175; Fungi - 11698; Plants - 7059; Viruses - 430; Other Eukaryotes - 34827 (source: NCBI BLink).","protein_coding"]
["AT1G74230","Chr1:27914698-27917083","cs","ls","OK",72.842,164.41,1.17446,-3.81525,0.000136046,0.00676856,"yes","GO:0005634 GO:0005739 GO:0003723 GO:0010228 GO:0005507 GO:0005524","AT1G74230.1","encodes a glycine-rich RNA binding protein.","protein_coding","GLYCINE-RICH RNA-BINDING PROTEIN 5 (GR-RBP5)","GLYCINE-RICH RNA-BINDING PROTEIN 5 (GR-RBP5)"]
["AT1G75580","Chr1:28377460-28378178","cs","ls","OK",0.502637,5.6395,3.48798,-3.48956,0.000483822,0.0181876,"yes","GO:0009733 GO:0005575 GO:0005516","AT1G75580.1","SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G19830.1); Has 1403 Blast hits to 1386 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1402; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT1G78100","Chr1:29387794-29389112","cs","ls","OK",13.1411,31.2218,1.24847,-3.39656,0.000682374,0.0238063,"yes","GO:0009733 GO:0009736 GO:0009741 GO:0005634 GO:0003674 GO:0010540 GO:0010541","AT1G78100.1","F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G22220.1); Has 149 Blast hits to 148 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","AUXIN UP-REGULATED F-BOX PROTEIN 1 (AUF1)","AUXIN UP-REGULATED F-BOX PROTEIN 1 (AUF1)"]
["AT1G79440","Chr1:29882209-29887412","cs","ls","OK",18.5927,41.2409,1.14934,-3.57932,0.000344488,0.0139471,"yes","GO:0004777 GO:0004028 GO:0051287 GO:0006540 GO:0009450 GO:0006333 GO:0009416 GO:0009570 GO:0005759 GO:0009408 GO:0005507 GO:0055114","AT1G79440.1","Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).","protein_coding","ALDEHYDE DEHYDROGENASE 5F1 (ALDH5F1)","SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1 (SSADH1)"]
["AT1G79470","Chr1:29894597-29897166","cs","ls","OK",7.81252,18.6994,1.25913,-3.33673,0.000847696,0.0282322,"yes","GO:0003938 GO:0006626 GO:0001510 GO:0006177 GO:0005829 GO:0055114","AT1G79470.1","Aldolase-type TIM barrel family protein; FUNCTIONS IN: IMP dehydrogenase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: oxidation reduction, GMP biosynthetic process, metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: IMP dehydrogenase (InterPro:IPR005990), IMP dehydrogenase related (InterPro:IPR018529), Aldolase-type TIM barrel (InterPro:IPR013785), IMP dehydrogenase/GMP reductase (InterPro:IPR001093), IMP dehydrogenase / GMP reductase, conserved site (InterPro:IPR015875); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT1G16350.1); Has 13395 Blast hits to 12591 proteins in 2701 species: Archae - 175; Bacteria - 7357; Metazoa - 460; Fungi - 182; Plants - 88; Viruses - 2; Other Eukaryotes - 5131 (source: NCBI BLink).","protein_coding"]
["AT1G80080","Chr1:30128004-30129591","cs","ls","OK",6.3094,24.8434,1.97729,-4.90943,{"v":9.13e-07,"d":"9.13E-07"},0.000103613,"yes","GO:0042127 GO:0048443 GO:0009737 GO:0005739 GO:0002237 GO:0007165 GO:0005515 GO:0004872 GO:0008356 GO:0010103 GO:0031225","AT1G80080.1","Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development.","protein_coding","TOO MANY MOUTHS (TMM)","RECEPTOR LIKE PROTEIN 17 (AtRLP17)"]
["AT2G01890","Chr2:396767-399208","cs","ls","OK",5.13918,30.4757,2.56805,-5.68579,{"v":1.3e-08,"d":"1.30E-08"},{"v":2.66e-06,"d":"2.66E-06"},"yes","GO:0010167 GO:0015706 GO:0016311 GO:0004722 GO:0005576 GO:0003993","AT2G01890.1","Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group.","protein_coding","PURPLE ACID PHOSPHATASE 8 (PAP8)","PURPLE ACID PHOSPHATASE 8 (ATPAP8)"]
["AT2G02850","Chr2:826403-827812","cs","ls","OK",6.83471,0,"-1.79769e+308","-1.79769e+308",0.00106348,0.0331416,"yes","GO:0009856 GO:0048196 GO:0009737 GO:0010162 GO:0019915 GO:0005886 GO:0009933 GO:0010228 GO:0048046 GO:0016567 GO:0009793 GO:0009845 GO:0009055 GO:0050826 GO:0010182 GO:0005507 GO:0048653 GO:0009909 GO:0009640","AT2G02850.1","Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.","protein_coding","PLANTACYANIN (ARPN)","PLANTACYANIN (ARPN)"]
["AT2G03090","Chr2:916853-918643","cs","ls","OK",9.93671,29.1178,1.55106,-3.98854,{"v":6.65e-05,"d":"6.65E-05"},0.00389301,"yes","GO:0009831 GO:0010089 GO:0009826 GO:0009828 GO:0044036 GO:0005576 GO:0006949","AT2G03090.1","member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.","protein_coding","EXPANSIN A15 (EXPA15)","EXPANSIN A15 (ATEXPA15)"]
["AT2G04378","Chr2:1525330-1526875","cs","ls","OK",16.6966,0,"-1.79769e+308","-1.79769e+308",{"v":1.37e-05,"d":"1.37E-05"},0.0010402,"yes","GO:0005975 GO:0005739 GO:0004553","AT2G04378.2","Beta-galactosidase related protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT5G01080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G12905","Chr2:5296363-5296582","cs","ls","OK",7.75146,115.45,3.89666,-4.04324,{"v":5.27e-05,"d":"5.27E-05"},0.00317122,"yes","GO:0008150 GO:0003674 GO:0005739","AT2G12905.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G13665","Chr2:5692096-5693016","cs","ls","OK",3.53927,0,"-1.79769e+308","-1.79769e+308",0.00169933,0.0467671,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G13665.1","Potential natural antisense gene, locus overlaps with AT2G13660","other_rna"]
["AT2G14285","Chr2:6052331-6053994","cs","ls","OK",54.0716,0,"-1.79769e+308","-1.79769e+308",{"v":2.21e-08,"d":"2.21E-08"},{"v":4.18e-06,"d":"4.18E-06"},"yes","GO:0005634 GO:0003674 GO:0006396","AT2G14285.1","Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: small nuclear ribonucleoprotein F (TAIR:AT4G30220.1); Has 827 Blast hits to 827 proteins in 226 species: Archae - 76; Bacteria - 0; Metazoa - 296; Fungi - 206; Plants - 125; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).","protein_coding"]
["AT2G15042","Chr2:6510164-6512637","cs","ls","OK",1.93987,0,"-1.79769e+308","-1.79769e+308",0.000821536,0.0277825,"yes","GO:0008150 GO:0005886","AT2G15042.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 34 (TAIR:AT3G11010.1); Has 56306 Blast hits to 17936 proteins in 777 species: Archae - 23; Bacteria - 1630; Metazoa - 5114; Fungi - 406; Plants - 45797; Viruses - 0; Other Eukaryotes - 3336 (source: NCBI BLink).","protein_coding"]
["AT2G15292","Chr2:6644280-6645533","cs","ls","OK",9.93398,0,"-1.79769e+308","-1.79769e+308",{"v":8.74e-07,"d":"8.74E-07"},0.000100334,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G15292.1","Unknown gene","other_rna"]
["AT2G16700","Chr2:7244607-7245741","cs","ls","OK",18.5054,69.953,1.91844,-4.90533,{"v":9.33e-07,"d":"9.33E-07"},0.000105198,"yes","GO:0005737 GO:0003779 GO:0008150","AT2G16700.1","Encodes actin depolymerizing factor 5 (ADF5).","protein_coding","ACTIN DEPOLYMERIZING FACTOR 5 (ADF5)","ACTIN DEPOLYMERIZING FACTOR 5 (ADF5)"]
["AT2G17870","Chr2:7763974-7765230","cs","ls","OK",36.8445,78.2545,1.08672,-3.26843,0.00108147,0.0332841,"yes","GO:0005737 GO:0005634 GO:0009631 GO:0008270 GO:0003677 GO:0032508","AT2G17870.1","Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance.","protein_coding","COLD SHOCK DOMAIN PROTEIN 3 (CSP3)","COLD SHOCK DOMAIN PROTEIN 3 (CSP3)"]
["AT2G18440","Chr2:7994940-7997239","cs","ls","OK",71.6603,142.879,0.995546,-3.25846,0.00112018,0.0341403,"yes","GO:0003674","AT2G18440.1","Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product.","other_rna","GENE WITH UNSTABLE TRANSCRIPT 15 (GUT15)","GENE WITH UNSTABLE TRANSCRIPT 15 (GUT15)"]
["AT2G18600","Chr2:8073199-8074982","cs","ls","OK",0.999232,7.52294,2.9124,-3.63399,0.000279069,0.0118565,"yes","GO:0004842 GO:0006301","AT2G18600.1","Ubiquitin-conjugating enzyme family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity, acid-amino acid ligase activity, ATP binding; INVOLVED IN: regulation of protein metabolic process, protein modification process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: RUB1 conjugating enzyme 1 (TAIR:AT4G36800.2); Has 8339 Blast hits to 8336 proteins in 387 species: Archae - 0; Bacteria - 2; Metazoa - 3796; Fungi - 1734; Plants - 1481; Viruses - 20; Other Eukaryotes - 1306 (source: NCBI BLink).","protein_coding"]
["AT2G21010","Chr2:9020943-9021870","cs","ls","OK",0.0679036,7.06679,6.70142,-3.86891,0.000109323,0.00574118,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G21010.1","C2 domain-containing protein. Possible pseudogene of AT2G20990.","protein_coding"]
["AT2G21130","Chr2:9055397-9056232","cs","ls","OK",22.61,121.595,2.42705,-6.61843,{"v":3.63e-11,"d":"3.63E-11"},{"v":1.8e-08,"d":"1.80E-08"},"yes","GO:0006457 GO:0007623 GO:0009414 GO:0005829 GO:0003755 GO:0005886 GO:0009409 GO:0009737","AT2G21130.1","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).","protein_coding"]
["AT2G21660","Chr2:9265248-9266393","cs","ls","OK",1472.76,5493.5,1.8992,-5.74101,{"v":9.41e-09,"d":"9.41E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0045087 GO:0048046 GO:0009414 GO:0010043 GO:0009651 GO:0006096 GO:0006094 GO:0000380 GO:0005634 GO:0005777 GO:0005739 GO:0046686 GO:0003690 GO:0010501 GO:0003697 GO:0006406 GO:0007623 GO:0032508 GO:0006833 GO:0010119 GO:0006972 GO:0010228 GO:0009409 GO","AT2G21660.1","Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).","protein_coding","GLYCINE-RICH RNA-BINDING PROTEIN 7 (GRP7)","GLYCINE RICH PROTEIN 7 (ATGRP7)"]
["AT2G22080","Chr2:9386515-9388183","cs","ls","OK",44.857,100.981,1.17068,-3.55444,0.00037879,0.0150087,"yes","GO:0005634 GO:0003674 GO:0006979","AT2G22080.1","unknown protein; Has 96314 Blast hits to 34847 proteins in 1702 species: Archae - 612; Bacteria - 27969; Metazoa - 24311; Fungi - 12153; Plants - 4409; Viruses - 1572; Other Eukaryotes - 25288 (source: NCBI BLink).","protein_coding"]
["AT2G25510","Chr2:10856371-10857156","cs","ls","OK",142.871,0,"-1.79769e+308","-1.79769e+308",{"v":3.23e-10,"d":"3.23E-10"},{"v":1.12e-07,"d":"1.12E-07"},"yes","GO:0008150 GO:0003674 GO:0005739","AT2G25510.1","unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G25964","Chr2:11068643-11071287","cs","ls","OK",4.73669,25.6979,2.4397,-3.50925,0.000449369,0.0171546,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G25964.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G28740","Chr2:12329487-12329995","cs","ls","OK",312.819,631.598,1.01368,-3.41064,0.000648114,0.0228966,"yes","GO:0005730 GO:0006334 GO:0000786 GO:0009414 GO:0003677","AT2G28740.1","histone 4","protein_coding","HISTONE H4 (HIS4)","HISTONE H4 (HIS4)"]
["AT2G28900","Chr2:12414113-12415578","cs","ls","OK",167.609,357.432,1.09256,-3.7014,0.00021441,0.00969534,"yes","GO:0009744 GO:0015450 GO:0009753 GO:0005773 GO:0009707 GO:0009611 GO:0042742 GO:0009409 GO:0009749 GO:0015171 GO:0045037","AT2G28900.1","Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment.","protein_coding","OUTER PLASTID ENVELOPE PROTEIN 16-1 (OEP16-1)","OUTER PLASTID ENVELOPE PROTEIN 16-L (ATOEP16-L)"]
["AT2G29350","Chr2:12600913-12602556","cs","ls","OK",0.464328,3.61641,2.96134,-3.2038,0.00135624,0.0395781,"yes","GO:0002213 GO:0009507 GO:0007568 GO:0004022 GO:0000166","AT2G29350.1","senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase","protein_coding","SENESCENCE-ASSOCIATED GENE 13 (SAG13)","SENESCENCE-ASSOCIATED GENE 13 (SAG13)"]
["AT2G29420","Chr2:12616563-12618899","cs","ls","OK",6.08993,22.5024,1.88558,-3.68302,0.000230488,0.0102928,"yes","GO:0010583 GO:0005829 GO:0004364 GO:0009751 GO:0009407","AT2G29420.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 7 (GSTU7)","GLUTATHIONE S-TRANSFERASE TAU 7 (ATGSTU7)"]
["AT2G29470","Chr2:12628540-12629543","cs","ls","OK",0.107059,5.5793,5.70361,-4.5863,{"v":4.51e-06,"d":"4.51E-06"},0.000426486,"yes","GO:0005737 GO:0004364 GO:0080129 GO:0006635 GO:0043161 GO:0009407 GO:0051788","AT2G29470.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 3 (GSTU3)","GLUTATHIONE S-TRANSFERASE TAU 3 (ATGSTU3)"]
["AT2G32180","Chr2:13671840-13673376","cs","ls","OK",56.1939,135.096,1.2655,-3.66599,0.00024638,0.0108484,"yes","GO:0009508 GO:0008150 GO:0003674 GO:0009507","AT2G32180.1","plastid transcriptionally active 18 (PTAC18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G32650.2); Has 271 Blast hits to 271 proteins in 67 species: Archae - 0; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).","protein_coding","PLASTID TRANSCRIPTIONALLY ACTIVE 18 (PTAC18)","PLASTID TRANSCRIPTIONALLY ACTIVE 18 (PTAC18)"]
["AT2G32870","Chr2:13944610-13946790","cs","ls","OK",12.9367,28.3213,1.13042,-3.29399,0.000987775,0.0313397,"yes","GO:0008150 GO:0005634 GO:0003674","AT2G32870.1","TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G32880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G33380","Chr2:14144830-14146471","cs","ls","OK",2.69309,19.1678,2.83135,-3.83886,0.000123608,0.00628471,"yes","GO:0031969 GO:0009737 GO:0005773 GO:0009620 GO:0010118 GO:0031407 GO:0009409 GO:0005509 GO:0009269 GO:0009751 GO:0042538","AT2G33380.1","Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. Isoform of caleosin with a role as a peroxygenase involved in oxylipin metabolism during biotic and abiotic stress.","protein_coding","RESPONSIVE TO DESSICATION 20 (RD20)","RESPONSIVE TO DESSICATION 20 (RD20)"]
["AT2G34810","Chr2:14685255-14687062","cs","ls","OK",4.82055,15.7811,1.71093,-3.9497,{"v":7.82e-05,"d":"7.82E-05"},0.00440033,"yes","GO:0005737 GO:0050660 GO:0008762 GO:0009620 GO:0009867 GO:0009611 GO:0009695 GO:0055114 GO:0009055","AT2G34810.1","FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30720.1); Has 4560 Blast hits to 4463 proteins in 716 species: Archae - 40; Bacteria - 1976; Metazoa - 12; Fungi - 1639; Plants - 673; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).","protein_coding"]
["AT2G34840","Chr2:14702487-14704353","cs","ls","OK",7.76737,0,"-1.79769e+308","-1.79769e+308",{"v":2.13e-05,"d":"2.13E-05"},0.00148832,"yes","GO:0008565 GO:0005829 GO:0006890 GO:0030126 GO:0005198","AT2G34840.1","Coatomer epsilon subunit; FUNCTIONS IN: protein transporter activity, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: COPI vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT1G30630.1); Has 446 Blast hits to 446 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 175; Fungi - 107; Plants - 92; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).","protein_coding"]
["AT2G35810","Chr2:15049149-15050323","cs","ls","OK",6.82334,29.4638,2.11039,-4.11822,{"v":3.82e-05,"d":"3.82E-05"},0.00239091,"yes","GO:0005829 GO:0019344 GO:0003674","AT2G35810.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35830.2); Has 153 Blast hits to 153 proteins in 52 species: Archae - 0; Bacteria - 62; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","protein_coding"]
["AT2G37770","Chr2:15834866-15837001","cs","ls","OK",1.67404,7.56507,2.17602,-3.21366,0.00131054,0.0387022,"yes","GO:0016229 GO:0008106 GO:0070401 GO:0009414 GO:0009409 GO:0009651 GO:0055114 GO:0009507","AT2G37770.2","Encodes an NADPH-dependent aldo-keto reductase that can act on a wide variety of substrates in vitro including saturated and unsaturated aldehydes, steroids, and sugars. GFP-tagged AKR4C9 localizes to the chloroplast where it may play a role in detoxifying reactive carbonyl compounds that threaten to impair the photosynthetic process. Transcript levels for this gene are up-regulated in response to cold, salt, and drought stress.","protein_coding","CHLOROPLASTIC ALDO-KETO REDUCTASE (ChlAKR)","CHLOROPLASTIC ALDO-KETO REDUCTASE (ChlAKR)"]
["AT2G38240","Chr2:16012534-16014753","cs","ls","OK",0.0351511,2.46904,6.13424,-3.83122,0.000127508,0.00640802,"yes","GO:0005737 GO:0010583 GO:0055114 GO:0009407 GO:0016706","AT2G38240.1","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8819 Blast hits to 8740 proteins in 1012 species: Archae - 0; Bacteria - 1137; Metazoa - 112; Fungi - 1067; Plants - 5036; Viruses - 0; Other Eukaryotes - 1467 (source: NCBI BLink).","protein_coding"]
["AT2G38720","Chr2:16188046-16192266","cs","ls","OK",5.84436,16.1268,1.46434,-3.59223,0.00032786,0.0134193,"yes","GO:0009524 GO:0005819 GO:0055028 GO:0051322 GO:0008017 GO:0009574 GO:0046785 GO:0009506","AT2G38720.1","microtubule-associated protein 65-5 (MAP65-5); CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated protein 65-2 (TAIR:AT4G26760.1); Has 9645 Blast hits to 7381 proteins in 767 species: Archae - 226; Bacteria - 1139; Metazoa - 4615; Fungi - 969; Plants - 706; Viruses - 30; Other Eukaryotes - 1960 (source: NCBI BLink).","protein_coding","MICROTUBULE-ASSOCIATED PROTEIN 65-5 (MAP65-5)","MICROTUBULE-ASSOCIATED PROTEIN 65-5 (MAP65-5)"]
["AT2G39800","Chr2:16596986-16603319","cs","ls","OK",45.3478,100.554,1.14886,-3.63971,0.00027295,0.011779,"yes","GO:0042538 GO:0006561 GO:0009555 GO:0004349 GO:0016020 GO:0004350 GO:0048364 GO:0005739 GO:0017084 GO:0009269 GO:0009737 GO:0006979 GO:0009507","AT2G39800.1","encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. encodes a delta1-pyrroline-5-carboxylate synthase that catalyzes the rate-limiting enzyme in the biosynthesis of proline. Gene is expressed in reproductive organs and tissues under non-stress conditions but in the whole plant under water-limiting condition. Expression is also induced by abscisic acid and salt stress in a light-dependent manner. P5CS1 appears to be involved in salt stress responses related to proline accumulation, including protection from reactive oxidative species. P5CS1 appears to be present in different cells and/or different subcellular locations from P5CS2 in a tissue-dependent manner.","protein_coding","DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1 (P5CS1)","(ATP5CS)"]
["AT2G40080","Chr2:16734293-16734912","cs","ls","OK",7.83641,25.9056,1.725,-3.15346,0.00161347,0.0452388,"yes","GO:0048573 GO:0005634 GO:0042753 GO:0009649 GO:0010017 GO:0010114 GO:0009909 GO:0042803","AT2G40080.1","Encodes a novel nuclear 111 amino-acid phytochrome-regulated component of a negative feedback loop involving the circadian clock central oscillator components CCA1 and LHY. ELF4 is necessary for light-induced expression of both CCA1 and LHY, and conversely, CCA1 and LHY act negatively on light-induced ELF4 expression. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. It is involved in the phyB-mediated constant red light induced seedling de-etiolation process and may function to coregulate the expression of a subset of phyB-regulated genes.","protein_coding","EARLY FLOWERING 4 (ELF4)","EARLY FLOWERING 4 (ELF4)"]
["AT2G40300","Chr2:16831292-16833280","cs","ls","OK",46.7049,116.291,1.31609,-4.1371,{"v":3.52e-05,"d":"3.52E-05"},0.00220956,"yes","GO:0009941 GO:0006879 GO:0010228 GO:0048366 GO:0009570 GO:0010039 GO:0005739 GO:0000302 GO:0008199 GO:0009793 GO:0006826 GO:0048481 GO:0010027 GO:0016226 GO:0015979 GO:0055114 GO:0016491","AT2G40300.1","Encodes FERRITIN 4, AtFER4. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool. Localize to mitochondria. Knock out mutants are not sensitive to abiotic stress.","protein_coding","FERRITIN 4 (FER4)","FERRITIN 4 (FER4)"]
["AT2G42485","Chr2:17690530-17691018","cs","ls","OK",24.1486,0,"-1.79769e+308","-1.79769e+308",{"v":3.32e-05,"d":"3.32E-05"},0.00211505,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G42485.1","Unknown gene","other_rna"]
["AT2G42530","Chr2:17709035-17709945","cs","ls","OK",77.8484,188.208,1.27359,-3.86692,0.000110218,0.00577295,"yes","GO:0009941 GO:0010150 GO:0009570 GO:0050832 GO:0009409 GO:0042631","AT2G42530.1","cold regulated 15b (COR15B); INVOLVED IN: response to cold, defense response to fungus; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cold-regulated 15a (TAIR:AT2G42540.2); Has 194 Blast hits to 148 proteins in 43 species: Archae - 0; Bacteria - 18; Metazoa - 5; Fungi - 6; Plants - 155; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).","protein_coding","COLD REGULATED 15B (COR15B)","COLD REGULATED 15B (COR15B)"]
["AT2G42540","Chr2:17711031-17712330","cs","ls","OK",46.2935,276.376,2.57775,-7.09226,{"v":1.32e-12,"d":"1.32E-12"},{"v":9.7e-10,"d":"9.70E-10"},"yes","GO:0009941 GO:0010310 GO:0042538 GO:0010363 GO:0006612 GO:0010150 GO:0009570 GO:0009617 GO:0000165 GO:0006355 GO:0050821 GO:0031348 GO:0009867 GO:0003674 GO:0009862 GO:0009414 GO:0050826 GO:0009737 GO:0009631 GO:0035304 GO:0010017","AT2G42540.2","A cold-regulated gene whose product is targeted to the chloroplast. Cor15am protects stromal proteins from aggregation under various stress conditions. Constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. Late Embryogenesis abundant protein (LEA).","protein_coding","COLD-REGULATED 15A (COR15A)","(COR15)"]
["AT2G43100","Chr2:17920659-17921689","cs","ls","OK",101.02,217.402,1.10573,-3.68499,0.000228715,0.0102488,"yes","GO:0019761 GO:0009316 GO:0009684 GO:0019344 GO:0009098 GO:0003861 GO:0009507","AT2G43100.1","isopropylmalate isomerase 2 (IPMI2); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8735 Blast hits to 8734 proteins in 2248 species: Archae - 359; Bacteria - 5628; Metazoa - 12; Fungi - 337; Plants - 71; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).","protein_coding","ISOPROPYLMALATE ISOMERASE 2 (IPMI2)","(ATLEUD1)"]
["AT2G45570","Chr2:18779792-18781958","cs","ls","OK",0.124575,2.3171,4.21723,-3.91475,{"v":9.05e-05,"d":"9.05E-05"},0.0049489,"yes","GO:0019825 GO:0020037 GO:0016705 GO:0016036 GO:0005576 GO:0042631 GO:0019375 GO:0055114 GO:0009055","AT2G45570.1","member of CYP76C","protein_coding","\"CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 2\" (CYP76C2)","\"CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 2\" (CYP76C2)"]
["AT2G47670","Chr2:19543990-19544806","cs","ls","OK",0.493257,5.57313,3.49808,-3.30692,0.000943265,0.0302705,"yes","GO:0010214 GO:0046910","AT2G47670.1","Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT3G62820.1); Has 822 Blast hits to 815 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 822; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G47770","Chr2:19568463-19569507","cs","ls","OK",0.143844,2.27209,3.98144,-3.28645,0.00101457,0.0319687,"yes","GO:0005795 GO:0009737 GO:0005783 GO:0020037 GO:0016021 GO:0005739 GO:0006778 GO:0009651","AT2G47770.1","Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks. It is degraded through the autophagy pathway.","protein_coding","TSPO(OUTER MEMBRANE TRYPTOPHAN-RICH SENSORY PROTEIN)-RELATED (TSPO)","TSPO(OUTER MEMBRANE TRYPTOPHAN-RICH SENSORY PROTEIN)-RELATED (ATTSPO)"]
["AT3G01313","Chr3:104686-104769","cs","ls","OK",2399.27,0,"-1.79769e+308","-1.79769e+308",0.000505102,0.0186243,"yes","GO:0000154 GO:0003674 GO:0005732","AT3G01313.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT3G03480","Chr3:828295-829896","cs","ls","OK",0.0948375,1.57347,4.05235,-3.35385,0.000796946,0.0270893,"yes","GO:0005737 GO:0010327 GO:0010597","AT3G03480.1","acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (CHAT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G17540.1); Has 2522 Blast hits to 2511 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 44; Plants - 2476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding","ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE (CHAT)","ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE (CHAT)"]
["AT3G03920","Chr3:1006841-1010480","cs","ls","OK",114.046,243.28,1.093,-3.55993,0.000370953,0.0147571,"yes","GO:0009535 GO:0005730 GO:0031120 GO:0009982 GO:0034968 GO:0006364 GO:0001510 GO:0030515 GO:0009909 GO:0042991","AT3G03920.1","H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity, RNA binding; LOCATED IN: chloroplast thylakoid membrane, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote (InterPro:IPR021154), H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (TAIR:AT5G18180.1); Has 27180 Blast hits to 8695 proteins in 812 species: Archae - 17; Bacteria - 4971; Metazoa - 11125; Fungi - 2086; Plants - 5744; Viruses - 428; Other Eukaryotes - 2809 (source: NCBI BLink).","protein_coding"]
["AT3G04650","Chr3:1261983-1264622","cs","ls","OK",25.3999,54.1801,1.09294,-3.44353,0.00057418,0.0207237,"yes","GO:0005739 GO:0009507","AT3G04650.1","FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G56000.1); Has 902 Blast hits to 899 proteins in 231 species: Archae - 14; Bacteria - 382; Metazoa - 7; Fungi - 2; Plants - 133; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink).","protein_coding"]
["AT3G07390","Chr3:2365300-2366496","cs","ls","OK",22.9221,48.7373,1.08829,-3.18437,0.00145067,0.0416146,"yes","GO:0009733 GO:0005201 GO:0046658 GO:0005576 GO:0030198 GO:0006007 GO:0010102","AT3G07390.1","isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.","protein_coding","AUXIN-INDUCED IN ROOT CULTURES 12 (AIR12)","AUXIN-INDUCED IN ROOT CULTURES 12 (AIR12)"]
["AT3G09390","Chr3:2889485-2890229","cs","ls","OK",253.924,686.394,1.43464,-4.80829,{"v":1.52e-06,"d":"1.52E-06"},0.000162463,"yes","GO:0005507 GO:0006878","AT3G09390.1","metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage","protein_coding","METALLOTHIONEIN 2A (MT2A)","METALLOTHIONEIN 2A (MT2A)"]
["AT3G10410","Chr3:3235290-3238113","cs","ls","OK",33.1319,65.3117,0.979122,-3.16972,0.00152586,0.0433952,"yes","GO:0005773 GO:0006508 GO:0005829 GO:0005576 GO:0004185","AT3G10410.1","SERINE CARBOXYPEPTIDASE-LIKE 49 (SCPL49); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 48 (TAIR:AT3G45010.1); Has 3569 Blast hits to 3439 proteins in 342 species: Archae - 0; Bacteria - 147; Metazoa - 678; Fungi - 883; Plants - 1454; Viruses - 0; Other Eukaryotes - 407 (source: NCBI BLink).","protein_coding","SERINE CARBOXYPEPTIDASE-LIKE 49 (scpl49)","CARBOXYPEPTIDASE Y (CPY)"]
["AT3G11480","Chr3:3614436-3617314","cs","ls","OK",0.0261119,0.989067,5.24329,-3.20282,0.00136089,0.0395781,"yes","GO:0009753 GO:0008757 GO:0005634 GO:0009611 GO:0006952 GO:0009695 GO:0009620","AT3G11480.1","The gene encodes a SABATH methyltransferase that methylates both salicylic acid and benzoic acid. It is highly expressed in flowers, induced by biotic and abiotic stress and thought to be involved in direct defense mechanism.","protein_coding","(BSMT1)","(ATBSMT1)"]
["AT3G14440","Chr3:4831287-4833599","cs","ls","OK",1.66695,6.37038,1.93417,-3.4592,0.000541783,0.0197701,"yes","GO:0009535 GO:0009688 GO:0042538 GO:0009570 GO:0045549 GO:0009414 GO:0009409 GO:0009737","AT3G14440.1","Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.","protein_coding","NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3 (NCED3)","NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3 (NCED3)"]
["AT3G14900","Chr3:5013290-5015292","cs","ls","OK",17.2268,56.0112,1.70106,-5.18508,{"v":2.16e-07,"d":"2.16E-07"},{"v":3.06e-05,"d":"3.06E-05"},"yes","GO:0009790 GO:0003674 GO:0009507","AT3G14900.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink).","protein_coding","EMBRYO DEFECTIVE 3120 (EMB3120)","EMBRYO DEFECTIVE 3120 (EMB3120)"]
["AT3G15750","Chr3:5335077-5336476","cs","ls","OK",3.40336,17.5817,2.36904,-4.09247,{"v":4.27e-05,"d":"4.27E-05"},0.0026231,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G15750.1","Essential protein Yae1, N-terminal; CONTAINS InterPro DOMAIN/s: Essential protein Yae1, N-terminal (InterPro:IPR019191); BEST Arabidopsis thaliana protein match is: Essential protein Yae1, N-terminal (TAIR:AT1G34570.1); Has 133 Blast hits to 133 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 20; Plants - 55; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).","protein_coding"]
["AT3G16750","Chr3:5701010-5702541","cs","ls","OK",7.88271,0,"-1.79769e+308","-1.79769e+308",{"v":5.85e-06,"d":"5.85E-06"},0.000528988,"yes","GO:0003674 GO:0005576 GO:0008150","AT3G16750.1","unknown protein; Has 4708 Blast hits to 1416 proteins in 195 species: Archae - 36; Bacteria - 1240; Metazoa - 1232; Fungi - 406; Plants - 191; Viruses - 23; Other Eukaryotes - 1580 (source: NCBI BLink).","protein_coding"]
["AT3G18535","Chr3:6373534-6377220","cs","ls","OK",5.93747,18.051,1.60416,-3.44799,0.000564779,0.0204588,"yes","GO:0005634 GO:0006464 GO:0004835","AT3G18535.1","tubulin-tyrosine ligases; FUNCTIONS IN: tubulin-tyrosine ligase activity; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344).","protein_coding"]
["AT3G21720","Chr3:7652486-7656011","cs","ls","OK",0.290761,4.36161,3.90695,-4.45472,{"v":8.4e-06,"d":"8.40E-06"},0.000706585,"yes","GO:0005737 GO:0004451 GO:0010162 GO:0019752","AT3G21720.1","Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).","protein_coding","ISOCITRATE LYASE (ICL)","ISOCITRATE LYASE (ICL)"]
["AT3G23450","Chr3:8410432-8412193","cs","ls","OK",38.5577,82.2845,1.0936,-3.31046,0.000931412,0.0300642,"yes","GO:0003674 GO:0008150","AT3G23450.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; Has 694543 Blast hits to 47111 proteins in 2535 species: Archae - 1794; Bacteria - 163056; Metazoa - 258989; Fungi - 49151; Plants - 70496; Viruses - 8919; Other Eukaryotes - 142138 (source: NCBI BLink).","protein_coding"]
["AT3G25760","Chr3:9403882-9405250","cs","ls","OK",10.2766,36.3999,1.82457,-4.24046,{"v":2.23e-05,"d":"2.23E-05"},0.00154283,"yes","GO:0009535 GO:0046423 GO:0009941 GO:0018119 GO:0009695 GO:0009269","AT3G25760.1","encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway.","protein_coding","ALLENE OXIDE CYCLASE 1 (AOC1)","EARLY-RESPONSIVE TO DEHYDRATION 12 (ERD12)"]
["AT3G26744","Chr3:9832688-9835247","cs","ls","OK",16.602,35.5395,1.09806,-3.24556,0.00117219,0.0353634,"yes","GO:0010162 GO:0003700 GO:0010182 GO:0005634 GO:0050826 GO:0009410 GO:0010228 GO:0010440 GO:0016567 GO:0009793 GO:0009845 GO:0045893 GO:0010388 GO:0019915 GO:0016571 GO:0009933 GO:0016579 GO:0009909 GO:0009640","AT3G26744.1","Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance.","protein_coding","INDUCER OF CBF EXPRESSION 1 (ICE1)","SCREAM (SCRM)"]
["AT3G27250","Chr3:10061544-10062731","cs","ls","OK",0.363427,4.05773,3.48093,-3.60822,0.000308302,0.0127237,"yes","GO:0008150 GO:0005634 GO:0003674","AT3G27250.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G28220","Chr3:10524403-10526728","cs","ls","OK",19.3988,68.3348,1.81665,-5.50262,{"v":3.74e-08,"d":"3.74E-08"},{"v":6.57e-06,"d":"6.57E-06"},"yes","GO:0005773 GO:0009941 GO:0003674 GO:0031540","AT3G28220.1","TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: vacuole, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G58270.1); Has 1242 Blast hits to 999 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).","protein_coding"]
["AT3G28290","Chr3:10547503-10549367","cs","ls","OK",4.81799,0,"-1.79769e+308","-1.79769e+308",{"v":7.24e-05,"d":"7.24E-05"},0.00415351,"yes","GO:0009507 GO:0005886","AT3G28290.1","Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.","protein_coding","(AT14A)","(AT14A)"]
["AT3G28300","Chr3:10565736-10567600","cs","ls","OK",4.81799,0,"-1.79769e+308","-1.79769e+308",{"v":7.24e-05,"d":"7.24E-05"},0.00415351,"yes","GO:0008305 GO:0008360 GO:0016337 GO:0009507","AT3G28300.1","Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.","protein_coding","(AT14A)","(AT14A)"]
["AT3G28510","Chr3:10685523-10687364","cs","ls","OK",2.09654,0,"-1.79769e+308","-1.79769e+308",0.00169151,0.0466576,"yes","GO:0010310 GO:0005783 GO:0009862 GO:0016887 GO:0005886 GO:0001666 GO:0005524","AT3G28510.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28540.1); Has 37676 Blast hits to 28869 proteins in 2974 species: Archae - 1302; Bacteria - 8814; Metazoa - 8958; Fungi - 4310; Plants - 3042; Viruses - 177; Other Eukaryotes - 11073 (source: NCBI BLink).","protein_coding"]
["AT3G43740","Chr3:15644053-15645662","cs","ls","OK",39.3349,0,"-1.79769e+308","-1.79769e+308",{"v":1.84e-09,"d":"1.84E-09"},{"v":5.21e-07,"d":"5.21E-07"},"yes","GO:0007165 GO:0005886","AT3G43740.2","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G21090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT3G43980","Chr3:15778401-15779311","cs","ls","OK",134.881,623.545,2.2088,-6.71051,{"v":1.94e-11,"d":"1.94E-11"},{"v":1.1e-08,"d":"1.10E-08"},"yes","GO:0003735 GO:0022627 GO:0006412","AT3G43980.1","Ribosomal protein S14p/S29e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S14 (InterPro:IPR001209); BEST Arabidopsis thaliana protein match is: Ribosomal protein S14p/S29e family protein (TAIR:AT4G33865.1); Has 986 Blast hits to 986 proteins in 355 species: Archae - 225; Bacteria - 0; Metazoa - 331; Fungi - 136; Plants - 156; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).","protein_coding"]
["AT3G44430","Chr3:16068256-16069750","cs","ls","OK",7.1555,0,"-1.79769e+308","-1.79769e+308",{"v":3.54e-06,"d":"3.54E-06"},0.000344218,"yes","GO:0008150 GO:0003674 GO:0005739","AT3G44430.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41660.1); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G44740","Chr3:16295969-16297805","cs","ls","OK",8.21016,0,"-1.79769e+308","-1.79769e+308",{"v":8.29e-06,"d":"8.29E-06"},0.00070007,"yes","GO:0006426 GO:0005737 GO:0004820 GO:0005524 GO:0048481","AT3G44740.1","Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, glycyl-tRNA aminoacylation; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160); BEST Arabidopsis thaliana protein match is: glycyl-tRNA synthetase / glycine--tRNA ligase (TAIR:AT1G29880.1); Has 3168 Blast hits to 2607 proteins in 995 species: Archae - 349; Bacteria - 1331; Metazoa - 339; Fungi - 293; Plants - 132; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).","protein_coding"]
["AT3G44798","Chr3:16342294-16343014","cs","ls","OK",10.014,0,"-1.79769e+308","-1.79769e+308",0.000103082,0.00550073,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G44798.1","other RNA","other_rna"]
["AT3G44860","Chr3:16379632-16381070","cs","ls","OK",7.86422,20.1714,1.35894,-3.32052,0.000898484,0.029287,"yes","GO:0009507 GO:0019010","AT3G44860.1","Encodes a farnesoic acid carboxyl-O-methyltransferase.","protein_coding","FARNESOIC ACID CARBOXYL-O-METHYLTRANSFERASE (FAMT)","FARNESOIC ACID CARBOXYL-O-METHYLTRANSFERASE (FAMT)"]
["AT3G44990","Chr3:16446974-16448764","cs","ls","OK",45.3687,91.909,1.01851,-3.25817,0.00112133,0.0341403,"yes","GO:0042546 GO:0016998 GO:0005618 GO:0033946 GO:0048046 GO:0016762","AT3G44990.1","xyloglucan endo-transglycosylase","protein_coding","XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8 (XTR8)","XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8 (XTR8)"]
["AT3G45440","Chr3:16664874-16666884","cs","ls","OK",0.146807,4.31998,4.87903,-5.02367,{"v":5.07e-07,"d":"5.07E-07"},{"v":6.33e-05,"d":"6.33E-05"},"yes","GO:0004674 GO:0006468 GO:0030246 GO:0005524 GO:0005886","AT3G45440.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G60320.1); Has 111175 Blast hits to 109934 proteins in 4169 species: Archae - 90; Bacteria - 12913; Metazoa - 40130; Fungi - 9355; Plants - 32817; Viruses - 349; Other Eukaryotes - 15521 (source: NCBI BLink).","protein_coding"]
["AT3G45860","Chr3:16863400-16866041","cs","ls","OK",2.6697,0,"-1.79769e+308","-1.79769e+308",0.000177636,0.0085175,"yes","GO:0006468 GO:0009751 GO:0012501 GO:0004674 GO:0005576 GO:0042742 GO:0005524","AT3G45860.1","Encodes a cysteine-rich receptor-like protein kinase. Involved in programmed cell death and defense response to pathogen.","protein_coding","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 4 (CRK4)","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 4 (CRK4)"]
["AT3G45930","Chr3:16883315-16883876","cs","ls","OK",156.924,317.1,1.01487,-3.28744,0.00101102,0.0319582,"yes","GO:0005634 GO:0003677 GO:0006334 GO:0000786","AT3G45930.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone H4 (InterPro:IPR001951), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink).","protein_coding"]
["AT3G46370","Chr3:17051954-17055514","cs","ls","OK",8.59435,0,"-1.79769e+308","-1.79769e+308",{"v":1.54e-08,"d":"1.54E-08"},{"v":3.06e-06,"d":"3.06E-06"},"yes","GO:0007169 GO:0006468 GO:0005886 GO:0005524 GO:0004674","AT3G46370.1","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46400.1); Has 158526 Blast hits to 120263 proteins in 4504 species: Archae - 95; Bacteria - 12978; Metazoa - 44044; Fungi - 9573; Plants - 73487; Viruses - 375; Other Eukaryotes - 17974 (source: NCBI BLink).","protein_coding"]
["AT3G47350","Chr3:17446817-17449703","cs","ls","OK",11.1323,0,"-1.79769e+308","-1.79769e+308",{"v":3.38e-06,"d":"3.38E-06"},0.000330576,"yes","GO:0016491 GO:0009507 GO:0008152 GO:0000166","AT3G47350.2","Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.","protein_coding","HYDROXYSTEROID DEHYDROGENASE 2 (HSD2)","HYDROXYSTEROID DEHYDROGENASE 2 (AtHSD2)"]
["AT3G47680","Chr3:17577397-17579577","cs","ls","OK",6.49878,0,"-1.79769e+308","-1.79769e+308",{"v":7.04e-06,"d":"7.04E-06"},0.000615422,"yes","GO:0009507 GO:0008150 GO:0003677","AT3G47680.1","DNA binding; BEST Arabidopsis thaliana protein match is: glutathione S-transferase THETA 3 (TAIR:AT5G41220.1); Has 545 Blast hits to 544 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 18; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","protein_coding"]
["AT3G47965","Chr3:17707917-17708909","cs","ls","OK",13.4735,0,"-1.79769e+308","-1.79769e+308",0.000360195,0.0143579,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G47965.1","unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT3G48520","Chr3:17974976-17976670","cs","ls","OK",0.155091,4.47466,4.85059,-4.83122,{"v":1.36e-06,"d":"1.36E-06"},0.0001464,"yes","GO:0010154 GO:0009753 GO:0009555 GO:0009620 GO:0016705 GO:0009611 GO:0020037 GO:0009695 GO:0019825 GO:0048480 GO:0005576 GO:0002213 GO:0009055 GO:0048653 GO:0055114 GO:0010200","AT3G48520.1","CYP94B3 is a jasmonoyl-isoleucine-12-hydroxylase that catalyzes the formation of 12-OH-JA-Ile from JA-Ile. By reducing the levels of this the biologically active phytohormone, CYP94B3 attenuates the jasmonic acid signaling cascade. CYP94B3 transcript levels rise in response to wounding.","protein_coding","CYTOCHROME P450, FAMILY 94, SUBFAMILY B, POLYPEPTIDE 3 (CYP94B3)","CYTOCHROME P450, FAMILY 94, SUBFAMILY B, POLYPEPTIDE 3 (CYP94B3)"]
["AT3G50480","Chr3:18733067-18734388","cs","ls","OK",53.7314,0,"-1.79769e+308","-1.79769e+308",{"v":2.02e-10,"d":"2.02E-10"},{"v":7.33e-08,"d":"7.33E-08"},"yes","GO:0051707 GO:0003674 GO:0009507","AT3G50480.1","Homolog of RPW8","protein_coding","HOMOLOG OF RPW8 4 (HR4)","HOMOLOG OF RPW8 4 (HR4)"]
["AT3G51660","Chr3:19164062-19165247","cs","ls","OK",29.7985,68.6505,1.20403,-3.27625,0.00105196,0.032834,"yes","GO:0005777 GO:0006569 GO:0009684 GO:0003674 GO:0006954 GO:0051707","AT3G51660.1","Tautomerase/MIF superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: inflammatory response, response to other organism; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tautomerase (InterPro:IPR014347), Macrophage migration inhibitory factor (InterPro:IPR001398); BEST Arabidopsis thaliana protein match is: Tautomerase/MIF superfamily protein (TAIR:AT5G01650.1); Has 396 Blast hits to 396 proteins in 86 species: Archae - 0; Bacteria - 25; Metazoa - 165; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).","protein_coding"]
["AT3G51860","Chr3:19239426-19242913","cs","ls","OK",0.832692,4.22695,2.34376,-3.32186,0.000894204,0.0291955,"yes","GO:0055062 GO:0006793 GO:0006874 GO:0016021 GO:0009624 GO:0006816 GO:0006882 GO:0006814 GO:0051592 GO:0005515 GO:0030026 GO:0015369 GO:0009705 GO:0055085 GO:0010351","AT3G51860.1","cation exchanger 3 (CAX3); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 1 (TAIR:AT2G38170.1); Has 3567 Blast hits to 3405 proteins in 1022 species: Archae - 24; Bacteria - 2167; Metazoa - 14; Fungi - 725; Plants - 252; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink).","protein_coding","CATION EXCHANGER 3 (CAX3)","(ATCAX3)"]
["AT3G55970","Chr3:20766734-20769324","cs","ls","OK",0.487525,3.28728,2.75335,-3.11905,0.00181435,0.0489592,"yes","GO:0005737 GO:0016706 GO:0005506 GO:0043090 GO:0055114","AT3G55970.1","jasmonate-regulated gene 21 (JRG21); FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8809 Blast hits to 8750 proteins in 1005 species: Archae - 0; Bacteria - 1115; Metazoa - 109; Fungi - 1073; Plants - 4993; Viruses - 0; Other Eukaryotes - 1519 (source: NCBI BLink).","protein_coding","JASMONATE-REGULATED GENE 21 (JRG21)","JASMONATE-REGULATED GENE 21 (JRG21)"]
["AT3G56020","Chr3:20790569-20791085","cs","ls","OK",260.505,566.381,1.12046,-3.63818,0.000274569,0.0118044,"yes","GO:0003735 GO:0006412 GO:0022625","AT3G56020.1","Ribosomal protein L41 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L41 (InterPro:IPR007836); Has 185 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 88; Fungi - 40; Plants - 48; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).","protein_coding"]
["AT3G56090","Chr3:20814046-20816035","cs","ls","OK",48.889,135.678,1.4726,-4.71032,{"v":2.47e-06,"d":"2.47E-06"},0.000246724,"yes","GO:0009941 GO:0006879 GO:0048366 GO:0009570 GO:0016020 GO:0000302 GO:0008199 GO:0006826 GO:0010039 GO:0009908 GO:0015979 GO:0055114 GO:0016491","AT3G56090.1","Encodes FERRITIN 3, AtFER3. Ferritins are a class of 24-mer multi-meric proteins found in all kingdoms of life. Function as the main iron store in mammals. Evidence suggests that Arabidopsis ferritins are essential to protect cells against oxidative damage, but they do not constitute the major iron pool.","protein_coding","FERRITIN 3 (FER3)","FERRITIN 3 (FER3)"]
["AT3G57010","Chr3:21095653-21097451","cs","ls","OK",2.94573,10.8989,1.88749,-3.54136,0.000398069,0.0155552,"yes","GO:0016844 GO:0009507 GO:0005783 GO:0009821 GO:0016132","AT3G57010.1","Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G57020.1); Has 984 Blast hits to 970 proteins in 187 species: Archae - 1; Bacteria - 187; Metazoa - 221; Fungi - 0; Plants - 480; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).","protein_coding"]
["AT3G58840","Chr3:21757311-21758772","cs","ls","OK",37.4172,85.768,1.19674,-3.21332,0.00131211,0.0387022,"yes","GO:0005778 GO:0007031 GO:0009536 GO:0007005 GO:0031966","AT3G58840.1","Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1. Involved in the morphogenesis and proliferation of peroxisomes and mitochondria.","protein_coding","PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR 1 (PMD1)","PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR 1 (PMD1)"]
["AT3G61010","Chr3:22571326-22575255","cs","ls","OK",5.79001,0,"-1.79769e+308","-1.79769e+308",{"v":9.06e-07,"d":"9.06E-07"},0.000103344,"yes","GO:0006879 GO:0016798 GO:0008199 GO:0006826 GO:0009507 GO:0055114 GO:0016491","AT3G61010.2","Ferritin/ribonucleotide reductase-like family protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, oxidoreductase activity, ferric iron binding, binding, transition metal ion binding; INVOLVED IN: oxidation reduction, cellular iron ion homeostasis, iron ion transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin/Dps protein (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT3G11040.1).","protein_coding"]
["AT4G00234","Chr4:100918-101788","cs","ls","OK",0.203842,8.69371,5.41445,-4.84418,{"v":1.27e-06,"d":"1.27E-06"},0.000138669,"yes","GO:0008150 GO:0003674 GO:0009507","AT4G00234.1","BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel protein (TAIR:AT4G00290.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT4G00620","Chr4:259027-261019","cs","ls","OK",27.4243,57.8511,1.07689,-3.39748,0.000680093,0.0237685,"yes","GO:0009396 GO:0009507 GO:0055114 GO:0004488 GO:0000166","AT4G00620.1","Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (InterPro:IPR020867), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","EMBRYO DEFECTIVE 3127 (EMB3127)","EMBRYO DEFECTIVE 3127 (EMB3127)"]
["AT4G01593","Chr4:690709-692169","cs","ls","OK",25.3181,0,"-1.79769e+308","-1.79769e+308",{"v":2.05e-05,"d":"2.05E-05"},0.00146191,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G01593.1","Potential natural antisense gene, locus overlaps with AT4G01595","other_rna"]
["AT4G01600","Chr4:693180-694340","cs","ls","OK",5.55094,19.762,1.83193,-3.13091,0.00174268,0.0475599,"yes","GO:0005634 GO:0003674","AT4G01600.1","GRAM domain family protein; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: FH interacting protein 1 (TAIR:AT1G28200.1); Has 358 Blast hits to 358 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G01870","Chr4:808375-810446","cs","ls","OK",1.83946,8.40211,2.19147,-4.11715,{"v":3.84e-05,"d":"3.84E-05"},0.00239456,"yes","GO:0010583 GO:0005634 GO:0009738 GO:0009723 GO:0003674 GO:0009407 GO:0006508 GO:0019243","AT4G01870.1","tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 6090 Blast hits to 4220 proteins in 1098 species: Archae - 42; Bacteria - 3414; Metazoa - 20; Fungi - 42; Plants - 120; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink).","protein_coding"]
["AT4G02850","Chr4:1264626-1268612","cs","ls","OK",15.2048,0,"-1.79769e+308","-1.79769e+308",0.000145707,0.00719509,"yes","GO:0003824 GO:0009058 GO:0007623 GO:0009736","AT4G02850.1","phenazine biosynthesis PhzC/PhzF family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT1G03210.1); Has 3282 Blast hits to 3279 proteins in 1066 species: Archae - 40; Bacteria - 2414; Metazoa - 118; Fungi - 78; Plants - 90; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink).","protein_coding"]
["AT4G02970","Chr4:1317498-1319179","cs","ls","OK",17.1898,0,"-1.79769e+308","-1.79769e+308",{"v":1.42e-06,"d":"1.42E-06"},0.000152088,"yes","GO:0005786 GO:0005634 GO:0003674","AT4G02970.1","Signal recognition particle. Type 4 of RNA polymerase III dependent genes.","protein_coding","7SL RNA1 (AT7SL-1)","7SL RNA1 (AT7SL-1)"]
["AT4G03050","Chr4:1344181-1346501","cs","ls","OK",0,144.909,"1.79769e+308","1.79769e+308",{"v":2.4e-11,"d":"2.40E-11"},{"v":1.32e-08,"d":"1.32E-08"},"yes","GO:0005737 GO:0016706 GO:0005506 GO:0055114","AT4G03050.2","Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.","protein_coding","(AOP3)","(AOP3)"]
["AT4G05040","Chr4:2578645-2581798","cs","ls","OK",5.28184,0,"-1.79769e+308","-1.79769e+308",{"v":2.98e-05,"d":"2.98E-05"},0.00193171,"yes","GO:0005575 GO:0008150","AT4G05040.1","ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G07825","Chr4:4643839-4645338","cs","ls","OK",6.17856,0,"-1.79769e+308","-1.79769e+308",{"v":9.26e-06,"d":"9.26E-06"},0.000749631,"yes","GO:0008150 GO:0003674 GO:0005739","AT4G07825.1","unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G09200","Chr4:5859256-5861803","cs","ls","OK",12.2655,0,"-1.79769e+308","-1.79769e+308",{"v":1.56e-07,"d":"1.56E-07"},{"v":2.33e-05,"d":"2.33E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G09200.1","SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G09250","Chr4:5876577-5878978","cs","ls","OK",7.33654,0,"-1.79769e+308","-1.79769e+308",{"v":2.83e-05,"d":"2.83E-05"},0.00185788,"yes","GO:0008150 GO:0005634 GO:0003674","AT4G09250.1","SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), LisH dimerisation motif (InterPro:IPR006594), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09310.1); Has 549 Blast hits to 535 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 232; Fungi - 115; Plants - 74; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).","protein_coding"]
["AT4G09310","Chr4:5902825-5905372","cs","ls","OK",12.2655,0,"-1.79769e+308","-1.79769e+308",{"v":1.56e-07,"d":"1.56E-07"},{"v":2.33e-05,"d":"2.33E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G09310.1","SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09200.1); Has 841 Blast hits to 827 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 362; Fungi - 175; Plants - 154; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).","protein_coding"]
["AT4G09420","Chr4:5962180-5963791","cs","ls","OK",3.79254,0,"-1.79769e+308","-1.79769e+308",0.000106837,0.00564048,"yes","GO:0006952 GO:0007165 GO:0043531 GO:0005622","AT4G09420.1","Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: shoot apex, cotyledon, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72850.1); Has 8163 Blast hits to 8050 proteins in 270 species: Archae - 0; Bacteria - 112; Metazoa - 6; Fungi - 2; Plants - 8040; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","protein_coding"]
["AT4G12917","Chr4:7563156-7563847","cs","ls","OK",8.07527,0,"-1.79769e+308","-1.79769e+308",0.000988295,0.0313397,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G12917.1","Unknown gene","other_rna"]
["AT4G13800","Chr4:8001861-8004139","cs","ls","OK",2.32055,0,"-1.79769e+308","-1.79769e+308",0.000852595,0.0283024,"yes","GO:0008150 GO:0005886","AT4G13800.1","Protein of unknown function (DUF803); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT3G23870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G14020","Chr4:8095214-8095736","cs","ls","OK",38.0341,161.763,2.08852,-5.39299,{"v":6.93e-08,"d":"6.93E-08"},{"v":1.15e-05,"d":"1.15E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G14020.1","Rapid alkalinization factor (RALF) family protein; CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G15440","Chr4:8835494-8838676","cs","ls","OK",0.576712,3.53404,2.6154,-3.38456,0.000712922,0.0246554,"yes","GO:0009941 GO:0004497 GO:0020037 GO:0016705 GO:0009611 GO:0006569 GO:0009684 GO:0006631 GO:0055114 GO:0009055","AT4G15440.1","Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.","protein_coding","HYDROPEROXIDE LYASE 1 (HPL1)","HYDROPEROXIDE LYASE 1 (HPL1)"]
["AT4G16146","Chr4:9142403-9144583","cs","ls","OK",42.5141,108.162,1.34719,-3.723,0.000196868,0.00920483,"yes","GO:0003674 GO:0005634 GO:0007623","AT4G16146.1","cAMP-regulated phosphoprotein 19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: cAMP-regulated phosphoprotein/endosulphine conserved region (InterPro:IPR006760); BEST Arabidopsis thaliana protein match is: cAMP-regulated phosphoprotein 19-related protein (TAIR:AT1G69510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G19112","Chr4:10454496-10459328","cs","ls","OK",7.98403,0,"-1.79769e+308","-1.79769e+308",0.0012135,0.0363446,"yes","GO:0005739","AT4G19112.1","Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF25 represents a conserved upstream opening reading frame relative to major ORF AT4G19110.1","protein_coding","CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 25 (CPuORF25)","CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 25 (CPuORF25)"]
["AT4G19240","Chr4:10527799-10529092","cs","ls","OK",0,25.1671,"1.79769e+308","1.79769e+308",{"v":7.13e-09,"d":"7.13E-09"},{"v":1.68e-06,"d":"1.68E-06"},"yes","GO:0008150 GO:0003674 GO:0005739","AT4G19240.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G19500","Chr4:10625658-10631570","cs","ls","OK",14.3753,0,"-1.79769e+308","-1.79769e+308",{"v":6.47e-11,"d":"6.47E-11"},{"v":2.92e-08,"d":"2.92E-08"},"yes","GO:0006952 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT4G19500.1","nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157), Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 20045 Blast hits to 11477 proteins in 434 species: Archae - 7; Bacteria - 464; Metazoa - 257; Fungi - 40; Plants - 18821; Viruses - 4; Other Eukaryotes - 452 (source: NCBI BLink).","protein_coding"]
["AT4G19540","Chr4:10657382-10659233","cs","ls","OK",4.27268,13.2763,1.63564,-3.20305,0.00135978,0.0395781,"yes","GO:0005739","AT4G19540.1","Encodes a iron-suflur protein required for NADH dehydrogenase.","protein_coding","IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE (INDH)","IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE (INDL)"]
["AT4G20480","Chr4:11034271-11035874","cs","ls","OK",8.08972,0,"-1.79769e+308","-1.79769e+308",{"v":2.26e-05,"d":"2.26E-05"},0.00155392,"yes","GO:0008150","AT4G20480.1","Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G22960","Chr4:12030019-12033137","cs","ls","OK",0.0871379,2.85607,5.03459,-4.58057,{"v":4.64e-06,"d":"4.64E-06"},0.000434205,"yes","GO:0005737 GO:0003674 GO:0008150","AT4G22960.1","Protein of unknown function (DUF544) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G11860.1); Has 737 Blast hits to 425 proteins in 174 species: Archae - 0; Bacteria - 23; Metazoa - 282; Fungi - 261; Plants - 75; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).","protein_coding"]
["AT4G23600","Chr4:12310618-12313212","cs","ls","OK",25.0056,113.349,2.18045,-6.37189,{"v":1.87e-10,"d":"1.87E-10"},{"v":6.99e-08,"d":"6.99E-08"},"yes","GO:0006546 GO:0006636 GO:0006733 GO:0030154 GO:0042218 GO:0048046 GO:0008483 GO:0019288 GO:0009108 GO:0030170 GO:0009106 GO:0016847 GO:0042538 GO:0009753 GO:0005773 GO:0009965 GO:0009611 GO:0004121 GO:0010188 GO:0006766 GO:0019761 GO:0009117 GO:0045893 GO","AT4G23600.1","Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.","protein_coding","CORONATINE INDUCED 1 (CORI3)","JASMONIC ACID RESPONSIVE 2 (JR2)"]
["AT4G24000","Chr4:12462029-12465625","cs","ls","OK",0,1.27882,"1.79769e+308","1.79769e+308",0.00157178,0.0444463,"yes","GO:0005794 GO:0016020 GO:0016760 GO:0030244","AT4G24000.1","encodes a protein similar to cellulose synthase","protein_coding","CELLULOSE SYNTHASE LIKE G2 (CSLG2)","ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2 (ATCSLG2)"]
["AT4G27050","Chr4:13575799-13578051","cs","ls","OK",4.18937,13.6034,1.69917,-3.27001,0.00107545,0.0331898,"yes","GO:0008150 GO:0005634 GO:0003674","AT4G27050.1","F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT2G29930.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT4G27820","Chr4:13857748-13860571","cs","ls","OK",15.6108,55.9259,1.84097,-5.58675,{"v":2.31e-08,"d":"2.31E-08"},{"v":4.33e-06,"d":"4.33E-06"},"yes","GO:0043169 GO:0005576 GO:0005777 GO:0005975 GO:0004553","AT4G27820.1","beta glucosidase 9 (BGLU9); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 11131 Blast hits to 10798 proteins in 1457 species: Archae - 142; Bacteria - 7630; Metazoa - 718; Fungi - 199; Plants - 1452; Viruses - 0; Other Eukaryotes - 990 (source: NCBI BLink).","protein_coding","BETA GLUCOSIDASE 9 (BGLU9)","BETA GLUCOSIDASE 9 (BGLU9)"]
["AT4G29020","Chr4:14304920-14305721","cs","ls","OK",58.0445,287.995,2.31081,-5.67144,{"v":1.42e-08,"d":"1.42E-08"},{"v":2.84e-06,"d":"2.84E-06"},"yes","GO:0003674 GO:0010075","AT4G29020.1","glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92355 Blast hits to 23750 proteins in 1587 species: Archae - 185; Bacteria - 38167; Metazoa - 25977; Fungi - 4591; Plants - 7302; Viruses - 1155; Other Eukaryotes - 14978 (source: NCBI BLink).","protein_coding"]
["AT4G29760","Chr4:14574113-14575148","cs","ls","OK",0.515811,15.907,4.94668,-5.27793,{"v":1.31e-07,"d":"1.31E-07"},{"v":2.01e-05,"d":"2.01E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT4G29760.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29770.2); Has 63 Blast hits to 63 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G29770","Chr4:14575717-14577643","cs","ls","OK",0.128083,3.30102,4.68776,-3.37175,0.000746923,0.0256525,"yes","GO:0006457 GO:0042542 GO:0005575 GO:0003674 GO:0009408 GO:0009644","AT4G29770.2","Target of trans acting-siR480/255.","protein_coding"]
["AT4G30650","Chr4:14954319-14954968","cs","ls","OK",89.6272,216.617,1.27314,-3.98419,{"v":6.77e-05,"d":"6.77E-05"},0.00393021,"yes","GO:0050832 GO:0009409 GO:0016021 GO:0042538","AT4G30650.1","Low temperature and salt responsive protein family; INVOLVED IN: response to salt stress, response to cold, hyperosmotic salinity response, defense response to fungus; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT4G30660.2); Has 1315 Blast hits to 1315 proteins in 423 species: Archae - 0; Bacteria - 542; Metazoa - 42; Fungi - 322; Plants - 377; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).","protein_coding"]
["AT4G30660","Chr4:14955372-14956790","cs","ls","OK",148.623,321.09,1.11132,-3.13412,0.0017237,0.0472613,"yes","GO:0009409 GO:0016021 GO:0042538 GO:0042631 GO:0006333","AT4G30660.1","Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT2G24040.1); Has 1253 Blast hits to 1253 proteins in 413 species: Archae - 0; Bacteria - 522; Metazoa - 40; Fungi - 292; Plants - 377; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).","protein_coding"]
["AT4G32230","Chr4:15565294-15566971","cs","ls","OK",0,7.51949,"1.79769e+308","1.79769e+308",0.000951857,0.0304272,"yes","GO:0008150 GO:0003674 GO:0005739","AT4G32230.1","unknown protein; Has 14 Blast hits to 14 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT4G33120","Chr4:15975385-15978111","cs","ls","OK",2.65638,12.1366,2.19183,-3.83226,0.000126971,0.00639721,"yes","GO:0005737 GO:0008610 GO:0030794 GO:0005886","AT4G33120.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: (S)-coclaurine-N-methyltransferase activity; INVOLVED IN: lipid biosynthetic process; CONTAINS InterPro DOMAIN/s: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G33110.2); Has 8479 Blast hits to 8475 proteins in 1584 species: Archae - 50; Bacteria - 4759; Metazoa - 58; Fungi - 355; Plants - 378; Viruses - 0; Other Eukaryotes - 2879 (source: NCBI BLink).","protein_coding"]
["AT4G33980","Chr4:16282695-16285059","cs","ls","OK",1.24777,11.7172,3.23121,-4.48181,{"v":7.4e-06,"d":"7.40E-06"},0.000641597,"yes","GO:0003674 GO:0005634 GO:0007623","AT4G33980.2","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.3).","protein_coding"]
["AT4G34881","Chr4:16617622-16618506","cs","ls","OK",45.2221,0,"-1.79769e+308","-1.79769e+308",{"v":1.01e-09,"d":"1.01E-09"},{"v":3e-07,"d":"3.00E-07"},"yes","GO:0008150 GO:0003674 GO:0005739","AT4G34881.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G37900","Chr4:17821736-17824627","cs","ls","OK",0.686622,5.04386,2.87694,-4.33764,{"v":1.44e-05,"d":"1.44E-05"},0.00108608,"yes","GO:0005737 GO:0006865","AT4G37900.1","Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink).","protein_coding"]
["AT4G37990","Chr4:17855875-17857639","cs","ls","OK",0.0625041,5.66863,6.50291,-5.3544,{"v":8.58e-08,"d":"8.58E-08"},{"v":1.4e-05,"d":"1.40E-05"},"yes","GO:0047681 GO:0005737 GO:0009617 GO:0009809 GO:0010583 GO:0006865 GO:0009626 GO:0045551 GO:0008270 GO:0009407 GO:0000166 GO:0055114","AT4G37990.1","Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.","protein_coding","ELICITOR-ACTIVATED GENE 3-2 (ELI3-2)","ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8 (ATCAD8)"]
["AT4G39260","Chr4:18273898-18275079","cs","ls","OK",606.676,1216,1.00314,-3.26638,0.00108931,0.0334734,"yes","GO:0005794 GO:0009737 GO:0000380 GO:0005730 GO:0005618 GO:0045087 GO:0005777 GO:0000166 GO:0048046 GO:0009409 GO:0007623 GO:0003723 GO:0010043 GO:0009651 GO:0009506 GO:0009507","AT4G39260.1","Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).","protein_coding","COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1 (CCR1)","GLYCINE-RICH RNA-BINDING PROTEIN 8 (GR-RBP8)"]
["AT4G39364","Chr4:18305414-18305536","cs","ls","OK",874.23,0,"-1.79769e+308","-1.79769e+308",0.000360195,0.0143579,"yes","GO:0000154 GO:0003674 GO:0005732","AT4G39364.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT5G01600","Chr5:227023-230051","cs","ls","OK",41.6953,195.78,2.23127,-7.2823,{"v":3.28e-13,"d":"3.28E-13"},{"v":2.51e-10,"d":"2.51E-10"},"yes","GO:0009535 GO:0006879 GO:0048366 GO:0009570 GO:0009617 GO:0005739 GO:0042542 GO:0010043 GO:0008199 GO:0006826 GO:0010039 GO:0009409 GO:0009908 GO:0015979 GO:0055114 GO:0016491","AT5G01600.1","Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.","protein_coding","FERRETIN 1 (FER1)","FERRETIN 1 (FER1)"]
["AT5G02230","Chr5:448104-450654","cs","ls","OK",9.21843,27.751,1.58995,-3.31382,0.000920302,0.0298025,"yes","GO:0016787 GO:0008152","AT5G02230.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).","protein_coding"]
["AT5G03200","Chr5:758373-761803","cs","ls","OK",9.31647,0,"-1.79769e+308","-1.79769e+308",0.000137625,0.00682999,"yes","GO:0005737 GO:0004842 GO:0008270 GO:0006499","AT5G03200.1","Paralog of LOG2 (At3g09770), a ubiquitin ligase that regulates amino acid export.","protein_coding","LOG2-LIKE UBIQUITIN LIGASE1 (LUL1)","LOG2-LIKE UBIQUITIN LIGASE1 (LUL1)"]
["AT5G03210","Chr5:762786-763321","cs","ls","OK",1.48636,13.651,3.19915,-3.7099,0.000207341,0.00944018,"yes","GO:0005634 GO:0003674 GO:0051607 GO:0005829","AT5G03210.1","Encodes a small polypeptide contributing to resistance to potyvirus.","protein_coding","DBP-INTERACTING PROTEIN 2 (DIP2)","(ATDIP2)"]
["AT5G03545","Chr5:894705-895400","cs","ls","OK",6.12802,21.0695,1.78167,-3.1605,0.00157497,0.0444587,"yes","GO:0045892 GO:0016036 GO:0019375 GO:0003674 GO:0005739","AT5G03545.1","Expressed in response to phosphate starvation, this response is enhanced by the presence of IAA.","protein_coding","(AT4)","(AT4)"]
["AT5G04950","Chr5:1457644-1458890","cs","ls","OK",12.3634,29.78,1.26827,-3.37417,0.000740381,0.0255162,"yes","GO:0071281 GO:0009555 GO:0009860 GO:0071369 GO:0030410 GO:0030418 GO:0010233","AT5G04950.1","Encodes a nicotianamide synthase.","protein_coding","NICOTIANAMINE SYNTHASE 1 (NAS1)","ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1 (ATNAS1)"]
["AT5G06760","Chr5:2089491-2090430","cs","ls","OK",0.134408,2.37868,4.14547,-3.17308,0.00150832,0.042958,"yes","GO:0005575 GO:0009793 GO:0003674 GO:0009414 GO:0009409 GO:0006970","AT5G06760.1","Encodes LEA4-5, a member of the Late Embryogenesis Abundant (LEA) proteins which typically accumulate in response to low water availability conditions imposed during development or by the environment. Most of the diverse set of LEA proteins can be grouped according to properties such as high hydrophilicity and high content of glycine or other small amino acids in what has been termed hydrophilins. LEA4-5 protects enzyme activities from the adverse effects induced by freeze-thaw cycles in vitro.","protein_coding","LATE EMBRYOGENESIS ABUNDANT 4-5 (LEA4-5)","LATE EMBRYOGENESIS ABUNDANT 4-5 (AtLEA4-5)"]
["AT5G07180","Chr5:2227570-2233417","cs","ls","OK",3.20253,7.57499,1.24203,-3.14962,0.00163486,0.0455169,"yes","GO:0009553 GO:0048443 GO:0006468 GO:0009740 GO:0009965 GO:0009686 GO:0009909 GO:0048507 GO:0004674 GO:0009845 GO:0048481 GO:0002237 GO:0010103 GO:0005524","AT5G07180.1","Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.","protein_coding","ERECTA-LIKE 2 (ERL2)","ERECTA-LIKE 2 (ERL2)"]
["AT5G08380","Chr5:2694676-2697724","cs","ls","OK",7.97671,22.1735,1.47497,-3.6537,0.000258489,0.0113273,"yes","GO:0005737 GO:0016139 GO:0005990 GO:0048046 GO:0004557 GO:0046477 GO:0009505","AT5G08380.1","alpha-galactosidase 1 (AGAL1); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 2 (TAIR:AT5G08370.1); Has 1677 Blast hits to 1666 proteins in 372 species: Archae - 6; Bacteria - 673; Metazoa - 331; Fungi - 272; Plants - 227; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).","protein_coding","ALPHA-GALACTOSIDASE 1 (AGAL1)","ALPHA-GALACTOSIDASE 1 (AGAL1)"]
["AT5G08460","Chr5:2733219-2735455","cs","ls","OK",0.0707039,2.76622,5.28998,-4.20471,{"v":2.61e-05,"d":"2.61E-05"},0.00174144,"yes","GO:0004091 GO:0005576 GO:0006629 GO:0045893","AT5G08460.1","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G71250.1); Has 3252 Blast hits to 3210 proteins in 140 species: Archae - 0; Bacteria - 172; Metazoa - 0; Fungi - 11; Plants - 3054; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","protein_coding"]
["AT5G08610","Chr5:2790294-2794215","cs","ls","OK",41.1031,90.4323,1.13759,-3.83301,0.000126586,0.00639406,"yes","GO:0009220 GO:0009507 GO:0003676 GO:0008026 GO:0005524","AT5G08610.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G08620.1); Has 49840 Blast hits to 44437 proteins in 3094 species: Archae - 842; Bacteria - 25196; Metazoa - 7587; Fungi - 5309; Plants - 2787; Viruses - 50; Other Eukaryotes - 8069 (source: NCBI BLink).","protein_coding","PIGMENT DEFECTIVE 340 (PDE340)","PIGMENT DEFECTIVE 340 (PDE340)"]
["AT5G13170","Chr5:4181041-4183306","cs","ls","OK",0.223263,15.1606,6.08544,-6.44317,{"v":1.17e-10,"d":"1.17E-10"},{"v":4.65e-08,"d":"4.65E-08"},"yes","GO:0010150 GO:0015770 GO:0008515 GO:0071470 GO:0071446 GO:0005887 GO:0071215","AT5G13170.1","Encodes a member of the SWEET sucrose efflux transporter family proteins.","protein_coding","SENESCENCE-ASSOCIATED GENE 29 (SAG29)","SENESCENCE-ASSOCIATED GENE 29 (SAG29)"]
["AT5G15230","Chr5:4944899-4946216","cs","ls","OK",93.9876,207.212,1.14057,-3.38467,0.000712632,0.0246554,"yes","GO:0019344 GO:0045454 GO:0005576 GO:0003674 GO:0009740","AT5G15230.1","Encodes gibberellin-regulated protein GASA4. Promotes GA responses and exhibits redox activity.","protein_coding","GAST1 PROTEIN HOMOLOG 4 (GASA4)","GAST1 PROTEIN HOMOLOG 4 (GASA4)"]
["AT5G15360","Chr5:4987436-4989182","cs","ls","OK",0,11.8922,"1.79769e+308","1.79769e+308",{"v":6.74e-05,"d":"6.74E-05"},0.003925,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G15360.1","unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G17090","Chr5:5621248-5622476","cs","ls","OK",0,7.83862,"1.79769e+308","1.79769e+308",{"v":8.33e-05,"d":"8.33E-05"},0.00462071,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G17090.1","Cystatin/monellin superfamily protein; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G17120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G17100","Chr5:5623020-5624800","cs","ls","OK",0,4.18658,"1.79769e+308","1.79769e+308",0.000402847,0.015711,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G17100.1","Cystatin/monellin superfamily protein; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G17110.1); Has 96 Blast hits to 86 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G17880","Chr5:5908873-5913099","cs","ls","OK",4.61525,0,"-1.79769e+308","-1.79769e+308",{"v":1.33e-07,"d":"1.33E-07"},{"v":2.04e-05,"d":"2.04E-05"},"yes","GO:0005737 GO:0010114 GO:0042742 GO:0043531 GO:0007165","AT5G17880.1","Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.","protein_coding","CONSTITUTIVE SHADE-AVOIDANCE1 (CSA1)","CONSTITUTIVE SHADE-AVOIDANCE1 (CSA1)"]
["AT5G20630","Chr5:6975103-6975993","cs","ls","OK",145.023,492.572,1.76406,-5.89541,{"v":3.74e-09,"d":"3.74E-09"},{"v":9.39e-07,"d":"9.39E-07"},"yes","GO:0019684 GO:0070838 GO:0030003 GO:0010103 GO:0005634 GO:0018119 GO:0030145 GO:0031012 GO:0048046 GO:0042742 GO:0045735 GO:0009409 GO:0009505","AT5G20630.1","Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.","protein_coding","GERMIN 3 (GER3)","ARABIDOPSIS THALIANA GERMIN 3 (ATGER3)"]
["AT5G23020","Chr5:7718120-7721839","cs","ls","OK",15.904,102.233,2.6844,-8.12759,{"v":4.44e-16,"d":"4.44E-16"},{"v":5.19e-13,"d":"5.19E-13"},"yes","GO:0019761 GO:0005739 GO:0009684 GO:0019344 GO:0009098 GO:0010177 GO:0003852 GO:0009507","AT5G23020.1","methylthioalkymalate synthase-like. Also known as 2-isopropylmalate synthase (IMS2). encodes a methylthioalkylmalate synthase involved in the biosynthesis of aliphatic glucosinolates which accepts all the omega-methylthio-2-oxoalkanoic acids needed to form the known C3 to C8 glucosinolates in Arabidopsis.","protein_coding","2-ISOPROPYLMALATE SYNTHASE 2 (IMS2)","(MAM3)"]
["AT5G23240","Chr5:7825881-7828724","cs","ls","OK",10.9054,32.8091,1.58905,-4.3994,{"v":1.09e-05,"d":"1.09E-05"},0.00085172,"yes","GO:0031072 GO:0006457 GO:0051082 GO:0009507","AT5G23240.1","DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G23570","Chr5:7943123-7946050","cs","ls","OK",17.5488,43.8652,1.3217,-4.02019,{"v":5.82e-05,"d":"5.82E-05"},0.00345611,"yes","GO:0035196 GO:0010267 GO:0005783 GO:0009616 GO:0010025 GO:0010050 GO:0005829","AT5G23570.1","Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.","protein_coding","SUPPRESSOR OF GENE SILENCING 3 (SGS3)","SUPPRESSOR OF GENE SILENCING 3 (ATSGS3)"]
["AT5G24090","Chr5:8143698-8145252","cs","ls","OK",0.0846115,1.71664,4.34259,-3.34081,0.000835355,0.0280112,"yes","GO:0043169 GO:0005975 GO:0050665 GO:0004553 GO:0009611 GO:0009409 GO:0005576 GO:0010228 GO:0016926 GO:0009651 GO:0042631 GO:0009642","AT5G24090.1","Chitinase A (class III) expressed exclusively under environmental stress conditions.","protein_coding","CHITINASE A (CHIA)","CHITINASE A (CHIA)"]
["AT5G24155","Chr5:8180117-8181027","cs","ls","OK",5.25353,36.349,2.79056,-3.55723,0.00037478,0.0148795,"yes","GO:0016126 GO:0055114 GO:0016491","AT5G24155.1","FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: squalene monoxygenase 6 (TAIR:AT5G24160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G24160","Chr5:8183074-8186640","cs","ls","OK",6.58035,27.2565,2.05036,-5.29815,{"v":1.17e-07,"d":"1.17E-07"},{"v":1.86e-05,"d":"1.86E-05"},"yes","GO:0016126 GO:0004506 GO:0050660 GO:0019745 GO:0016021 GO:0055114","AT5G24160.1","squalene monoxygenase 6 (SQE6); FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G24150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","SQUALENE MONOXYGENASE 6 (SQE6)","SQUALENE MONOXYGENASE 6 (SQE6)"]
["AT5G24240","Chr5:8228891-8234652","cs","ls","OK",0.0617089,6.21507,6.65415,-5.12857,{"v":2.92e-07,"d":"2.92E-07"},{"v":4e-05,"d":"4.00E-05"},"yes","GO:0016773 GO:0005777 GO:0009507","AT5G24240.1","Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, phosphotransferase activity, alcohol group as acceptor; LOCATED IN: peroxisome; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: phosphoinositide 4-kinase gamma 4 (TAIR:AT2G46500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G24400","Chr5:8330314-8331837","cs","ls","OK",14.7684,33.4582,1.17985,-3.25955,0.00111589,0.0340792,"yes","GO:0017057 GO:0071461 GO:0009570 GO:0005777 GO:0009793 GO:0006098 GO:0042742 GO:0002229","AT5G24400.1","Encodes a protein with 6-phosphoglucunolactonase activity that localizes to the chloroplasts and the peroxisome. However, mutant phenotypes observed in pgl3 mutant plants can be complemented with a chloroplast-targeted version of the protein. PGL3 likely functions in the oxidative branch of the pentose phosphate pathway. pgl3 mutant phenotypes suggest that it is important in pathogen defense and maintenance of cellular redox homeostasis.","protein_coding","EMBRYO DEFECTIVE 2024 (emb2024)","6-PHOSPHOGLUCONOLACTONASE 3 (PGL3)"]
["AT5G24780","Chr5:8507589-8508957","cs","ls","OK",11.1066,44.1684,1.9916,-4.75253,{"v":2.01e-06,"d":"2.01E-06"},0.000204507,"yes","GO:0009753 GO:0005773 GO:0008134 GO:0006952 GO:0003993 GO:0009507","AT5G24780.1","encodes an acid phosphatase similar to soybean vegetative storage proteins. Gene expression is induced by wounding and jasmonic acid.","protein_coding","VEGETATIVE STORAGE PROTEIN 1 (VSP1)","VEGETATIVE STORAGE PROTEIN 1 (VSP1)"]
["AT5G25110","Chr5:8657625-8659322","cs","ls","OK",0.162873,2.38833,3.87418,-3.8385,0.000123788,0.00628471,"yes","GO:0006468 GO:0050832 GO:0004674 GO:0007165 GO:0005886 GO:0005524","AT5G25110.1","member of AtCIPKs","protein_coding","CBL-INTERACTING PROTEIN KINASE 25 (CIPK25)","SNF1-RELATED PROTEIN KINASE 3.25 (SnRK3.25)"]
["AT5G27220","Chr5:9578756-9582752","cs","ls","OK",0.168096,1.47386,3.13223,-3.54884,0.000386938,0.01518,"yes","GO:0003674 GO:0005829 GO:0008150","AT5G27220.1","Frigida-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G28030","Chr5:10030405-10032451","cs","ls","OK",20.0496,86.2651,2.10521,-5.81032,{"v":6.24e-09,"d":"6.24E-09"},{"v":1.49e-06,"d":"1.49E-06"},"yes","GO:0005737 GO:0006535 GO:0004124 GO:0030170","AT5G28030.2","L-cysteine desulfhydrase 1 (DES1); FUNCTIONS IN: pyridoxal phosphate binding, cysteine synthase activity, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Cysteine synthase A (InterPro:IPR005859), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Cysteine synthase K/M (InterPro:IPR005856); BEST Arabidopsis thaliana protein match is: cysteine synthase D2 (TAIR:AT5G28020.6); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding","L-CYSTEINE DESULFHYDRASE 1 (DES1)","L-CYSTEINE DESULFHYDRASE 1 (DES1)"]
["AT5G28910","Chr5:10930568-10932999","cs","ls","OK",3.32179,10.1744,1.61491,-3.43341,0.000596035,0.0213958,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G28910.2","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","protein_coding"]
["AT5G28919","Chr5:10940032-10943378","cs","ls","OK",7.35632,0,"-1.79769e+308","-1.79769e+308",{"v":4e-06,"d":"4.00E-06"},0.000383713,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G28919.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Expressed protein (TAIR:AT3G01345.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G32460","Chr5:12081802-12084148","cs","ls","OK",0.0264297,4.99081,7.56097,-4.83446,{"v":1.34e-06,"d":"1.34E-06"},0.00014482,"yes","GO:0006355 GO:0005634 GO:0003677","AT5G32460.1","Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G00260.1); Has 518 Blast hits to 261 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G36930","Chr5:14567621-14572630","cs","ls","OK",6.52219,0,"-1.79769e+308","-1.79769e+308",{"v":2.25e-09,"d":"2.25E-09"},{"v":5.95e-07,"d":"5.95E-07"},"yes","GO:0005737 GO:0006952 GO:0007165 GO:0043531","AT5G36930.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G37130","Chr5:14681377-14686684","cs","ls","OK",23.281,140.95,2.59796,-8.58989,0,0,"yes","GO:0048046 GO:0005634 GO:0008150","AT5G37130.1","Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G17270.1); Has 5505 Blast hits to 3950 proteins in 698 species: Archae - 506; Bacteria - 2164; Metazoa - 520; Fungi - 303; Plants - 259; Viruses - 0; Other Eukaryotes - 1753 (source: NCBI BLink).","protein_coding"]
["AT5G39410","Chr5:15766036-15770410","cs","ls","OK",13.8031,29.288,1.08532,-3.14848,0.00164122,0.04563,"yes","GO:0009941 GO:0007623 GO:0006333 GO:0005739 GO:0000166 GO:0005886 GO:0005774 GO:0055114 GO:0016491","AT5G39410.1","Saccharopine dehydrogenase ; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase / Homospermidine synthase (InterPro:IPR005097); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G39860","Chr5:15957416-15958455","cs","ls","OK",6.7686,25.9391,1.9382,-3.59631,0.000322765,0.013238,"yes","GO:0009826 GO:0009741 GO:0003700 GO:0005634 GO:0048510 GO:0009640","AT5G39860.1","Encodes PRE1 (PACLOBUTRAZOL RESISTANCE1). PRE1 and IBH1 form a pair of antagonistic HLH/bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation. BNQ1 is directly and negatively regulated by AP3 and PI in petals.Required for appropriate regulation of flowering time.","protein_coding","PACLOBUTRAZOL RESISTANCE1 (PRE1)","PACLOBUTRAZOL RESISTANCE1 (PRE1)"]
["AT5G42825","Chr5:17171963-17172742","cs","ls","OK",9.66917,0,"-1.79769e+308","-1.79769e+308",0.000118998,0.00620008,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G42825.1","unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G42900","Chr5:17197640-17199793","cs","ls","OK",2.26567,14.848,2.71226,-3.84631,0.000119909,0.00621005,"yes","GO:0009409 GO:0005634 GO:0003674","AT5G42900.1","cold regulated gene 27 (COR27); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33980.1); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","COLD REGULATED GENE 27 (COR27)","COLD REGULATED GENE 27 (COR27)"]
["AT5G45490","Chr5:18425836-18432397","cs","ls","OK",69.0237,0,"-1.79769e+308","-1.79769e+308",{"v":1.22e-11,"d":"1.22E-11"},{"v":7.58e-09,"d":"7.58E-09"},"yes","GO:0005575 GO:0043531","AT5G45490.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G45440.1); Has 3977 Blast hits to 3964 proteins in 194 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 8; Plants - 3946; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).","protein_coding"]
["AT5G46730","Chr5:18964011-18965068","cs","ls","OK",41.51,100.595,1.27703,-3.36186,0.000774208,0.0264523,"yes","GO:0003674 GO:0008150","AT5G46730.1","glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 448555 Blast hits to 73639 proteins in 3057 species: Archae - 1103; Bacteria - 116328; Metazoa - 161151; Fungi - 31669; Plants - 45641; Viruses - 5898; Other Eukaryotes - 86765 (source: NCBI BLink).","protein_coding"]
["AT5G46740","Chr5:18965270-18968742","cs","ls","OK",3.25266,10.0783,1.63156,-3.91158,{"v":9.17e-05,"d":"9.17E-05"},0.00498691,"yes","GO:0009165 GO:0005634 GO:0006511 GO:0004843 GO:0004221","AT5G46740.1","Encodes a ubiquitin-specific protease.","protein_coding","UBIQUITIN-SPECIFIC PROTEASE 21 (UBP21)","UBIQUITIN-SPECIFIC PROTEASE 21 (UBP21)"]
["AT5G46750","Chr5:18969748-18971932","cs","ls","OK",29.9347,69.937,1.22424,-3.91063,{"v":9.21e-05,"d":"9.21E-05"},0.00499292,"yes","GO:0009737 GO:0032312 GO:0005634 GO:0008060 GO:0008270 GO:0003677","AT5G46750.1","A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.","protein_coding","ARF-GAP DOMAIN 9 (AGD9)","ARF-GAP DOMAIN 9 (AGD9)"]
["AT5G46760","Chr5:18974230-18976009","cs","ls","OK",25.4955,58.2259,1.19142,-3.79456,0.000147904,0.00726742,"yes","GO:0009718 GO:0009753 GO:0003700 GO:0005634 GO:0006952 GO:0045893 GO:0043425","AT5G46760.1","MYC3 is a JAZ-interacting transcription factor that act together with MYC2 and MYC4 to activate JA-responses.","protein_coding","(MYC3)","(MYC3)"]
["AT5G47250","Chr5:19185793-19188745","cs","ls","OK",1.41982,5.59664,1.97885,-3.84279,0.000121641,0.00622395,"yes","GO:0006952 GO:0043531 GO:0005739","AT5G47250.1","LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G48090","Chr5:19484164-19488657","cs","ls","OK",0.0794868,3.07354,5.27304,-5.27884,{"v":1.3e-07,"d":"1.30E-07"},{"v":2.01e-05,"d":"2.01E-05"},"yes","GO:0005634 GO:0008270","AT5G48090.1","EDM2-like protein1 (ELP1); BEST Arabidopsis thaliana protein match is: ENHANCED DOWNY MILDEW 2 (TAIR:AT5G55390.2); Has 373 Blast hits to 351 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).","protein_coding","EDM2-LIKE PROTEIN1 (ELP1)","EDM2-LIKE PROTEIN1 (ELP1)"]
["AT5G48110","Chr5:19501156-19504357","cs","ls","OK",0.0247522,1.30653,5.72204,-3.53534,0.000407257,0.0158209,"yes","GO:0010333 GO:0000287 GO:0008152 GO:0009507","AT5G48110.1","Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G70080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G48250","Chr5:19561318-19563722","cs","ls","OK",11.4381,35.6084,1.63838,-4.61428,{"v":3.94e-06,"d":"3.94E-06"},0.00038012,"yes","GO:0007623 GO:0003700 GO:0005634 GO:0008270 GO:0005515 GO:0005886","AT5G48250.1","B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 9 (TAIR:AT3G07650.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G48350","Chr5:19593216-19594441","cs","ls","OK",0.0960151,2.78375,4.85762,-4.10859,{"v":3.98e-05,"d":"3.98E-05"},0.00246944,"yes","GO:0006139 GO:0008408 GO:0005634 GO:0003676","AT5G48350.1","Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: shoot apex, sperm cell, egg cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G62320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G49440","Chr5:20048238-20049597","cs","ls","OK",36.4684,0,"-1.79769e+308","-1.79769e+308",{"v":3.4e-10,"d":"3.40E-10"},{"v":1.15e-07,"d":"1.15E-07"},"yes","GO:0008150 GO:0005634 GO:0003674","AT5G49440.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G50565","Chr5:20580255-20584559","cs","ls","OK",24.4873,0,"-1.79769e+308","-1.79769e+308",{"v":1.75e-06,"d":"1.75E-06"},0.000182336,"yes","GO:0003674 GO:0008150","AT5G50565.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50665.2); Has 6 Blast hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G50665","Chr5:20613633-20615470","cs","ls","OK",31.8613,0,"-1.79769e+308","-1.79769e+308",{"v":2.88e-06,"d":"2.88E-06"},0.000286264,"yes","GO:0003674 GO:0008150","AT5G50665.2","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50565.2).","protein_coding"]
["AT5G50770","Chr5:20646679-20648725","cs","ls","OK",0.370614,3.58304,3.27319,-3.25455,0.00113573,0.0344729,"yes","GO:0016491 GO:0005576 GO:0008152 GO:0000166","AT5G50770.1","Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.","protein_coding","HYDROXYSTEROID DEHYDROGENASE 6 (HSD6)","HYDROXYSTEROID DEHYDROGENASE 6 (HSD6)"]
["AT5G52310","Chr5:21240848-21243613","cs","ls","OK",20.2525,80.1574,1.98473,-6.43032,{"v":1.27e-10,"d":"1.27E-10"},{"v":4.96e-08,"d":"4.96E-08"},"yes","GO:0010150 GO:0042538 GO:0005634 GO:0009269 GO:0003674 GO:0009409 GO:0009737","AT5G52310.1","cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression","protein_coding","LOW-TEMPERATURE-INDUCED 78 (LTI78)","COLD REGULATED 78 (COR78)"]
["AT5G54190","Chr5:21990911-21992812","cs","ls","OK",0.969611,8.02289,3.04864,-3.20736,0.00133961,0.0393668,"yes","GO:0009534 GO:0015995 GO:0009941 GO:0016630 GO:0000166 GO:0009723 GO:0055114","AT5G54190.1","light-dependent NADPH:protochlorophyllide oxidoreductase A","protein_coding","PROTOCHLOROPHYLLIDE OXIDOREDUCTASE A (PORA)","PROTOCHLOROPHYLLIDE OXIDOREDUCTASE A (PORA)"]
["AT5G55570","Chr5:22514474-22517929","cs","ls","OK",16.7873,59.058,1.81476,-3.25519,0.00113317,0.034448,"yes","GO:0005739","AT5G55570.1","unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G56380","Chr5:22838671-22841015","cs","ls","OK",3.9279,0,"-1.79769e+308","-1.79769e+308",{"v":1.01e-05,"d":"1.01E-05"},0.000800566,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G56380.1","F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G32375.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G57110","Chr5:23109437-23117563","cs","ls","OK",8.82164,22.9291,1.37806,-3.5534,0.000380283,0.0150379,"yes","GO:0043621 GO:0070588 GO:0009624 GO:0006882 GO:0009506 GO:0005388 GO:0046872 GO:0006754 GO:0005524 GO:0005516","AT5G57110.1","Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.","protein_coding","\"AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8\" (ACA8)","\"AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8\" (AT-ACA8)"]
["AT5G59220","Chr5:23894403-23896619","cs","ls","OK",0.382731,2.92643,2.93474,-3.24128,0.00118996,0.0357907,"yes","GO:0009733 GO:0010150 GO:0009723 GO:0042538 GO:0009753 GO:0005829 GO:0009611 GO:0004722 GO:0009658 GO:0010118 GO:0009414 GO:0005886 GO:0009409 GO:0009788 GO:0033106 GO:0005634","AT5G59220.1","highly ABA-induced PP2C gene 1 (HAI1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 2 (TAIR:AT1G07430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","HIGHLY ABA-INDUCED PP2C GENE 1 (HAI1)","SENESCENCE ASSOCIATED GENE 113 (SAG113)"]
["AT5G59320","Chr5:23928970-23929745","cs","ls","OK",1.7976,10.7218,2.5764,-3.11392,0.00184622,0.0495931,"yes","GO:0009737 GO:0006869 GO:0005618 GO:0008289 GO:0048046 GO:0009414 GO:0009409 GO:0042538","AT5G59320.1","Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.","protein_coding","LIPID TRANSFER PROTEIN 3 (LTP3)","LIPID TRANSFER PROTEIN 3 (LTP3)"]
["AT5G60100","Chr5:24197997-24201404","cs","ls","OK",4.90162,26.4763,2.43337,-5.53373,{"v":3.13e-08,"d":"3.13E-08"},{"v":5.66e-06,"d":"5.66E-06"},"yes","GO:0032091 GO:0016310 GO:0000156 GO:0006333 GO:0006355 GO:0042752 GO:0005515 GO:0000160 GO:0005634","AT5G60100.2","Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.","protein_coding","PSEUDO-RESPONSE REGULATOR 3 (PRR3)","PSEUDO-RESPONSE REGULATOR 3 (PRR3)"]
["AT5G61380","Chr5:24675063-24678550","cs","ls","OK",10.9793,23.435,1.09388,-3.33326,0.000858359,0.0283892,"yes","GO:0009639 GO:0048574 GO:0003700 GO:0000160 GO:0000156 GO:0010629 GO:0006355 GO:0042752 GO:0005515 GO:0005634 GO:0010031","AT5G61380.1","Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.","protein_coding","TIMING OF CAB EXPRESSION 1 (TOC1)","TIMING OF CAB EXPRESSION 1 (TOC1)"]
["AT5G61820","Chr5:24834316-24836694","cs","ls","OK",10.4097,32.3232,1.63464,-4.42056,{"v":9.84e-06,"d":"9.84E-06"},0.000788009,"yes","GO:0005773 GO:0009738 GO:0009610 GO:0003674 GO:0046482 GO:0009507","AT5G61820.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G64640","Chr5:25836726-25839199","cs","ls","OK",4.98764,12.3831,1.31194,-3.20715,0.00134059,0.0393668,"yes","GO:0042545 GO:0030599 GO:0005886 GO:0004857 GO:0009505 GO:0009507","AT5G64640.1","Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G09760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G66052","Chr5:26416125-26416924","cs","ls","OK",10.4582,0,"-1.79769e+308","-1.79769e+308",{"v":7.48e-05,"d":"7.48E-05"},0.00426796,"yes","GO:0005575 GO:0003674 GO:0008150","AT5G66052.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G66380","Chr5:26513523-26515695","cs","ls","OK",2.49782,12.5549,2.32951,-3.84825,0.000118963,0.00620008,"yes","GO:0015884 GO:0009941 GO:0008517 GO:0005743","AT5G66380.1","Encodes a folate transporter that is located in the chloroplast envelope and is able to mediate exogenous folate uptake when expressed in E. coli. However, this is not the sole folate transporter for chloroplasts as null mutants of this gene have no discernible phenotype when grown under folate-sufficient conditions and contained wild-type levels of folates in leaves.","protein_coding","FOLATE TRANSPORTER 1 (FOLT1)","FOLATE TRANSPORTER 1 (FOLT1)"]
["AT5G67060","Chr5:26766127-26767250","cs","ls","OK",0.504177,3.8264,2.92399,-3.15091,0.00162762,0.0455169,"yes","GO:0003700 GO:0006355 GO:0005634 GO:0010500 GO:0048462","AT5G67060.1","HECATE 1 (HEC1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: transmitting tissue development, carpel formation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G50330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","HECATE 1 (HEC1)","HECATE 1 (HEC1)"]

{"sheet":"Lower in Ler","index":2,"n_rows":399,"n_cols":18,"rows_kept":399,"flags":["formulas_cached_only"]}
["gene","locus","sample_1","sample_2","status","value_1","value_2","log2(fold_change)","test_stat","p_value","q_value","significant","GO","Representative Gene Model Name","Gene Description","Gene Model Type","Primary Gene Symbol"]
["AT1G01680","Chr1:246410-248367","cs","ls","OK",2.17075,0.121572,-4.15831,3.30673,0.000943903,0.0302705,"yes","GO:0016567 GO:0005634 GO:0004842 GO:0000151","AT1G01680.1","plant U-box 54 (PUB54); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G01660.1); Has 2251 Blast hits to 2122 proteins in 140 species: Archae - 0; Bacteria - 22; Metazoa - 203; Fungi - 25; Plants - 1809; Viruses - 3; Other Eukaryotes - 189 (source: NCBI BLink).","protein_coding","PLANT U-BOX 54 (PUB54)","PLANT U-BOX 54 (PUB54)"]
["AT1G04770","Chr1:1336370-1337849","cs","ls","OK",79.8165,28.3349,-1.49411,4.4636,{"v":8.06e-06,"d":"8.06E-06"},0.000683719,"yes","GO:0009658","AT1G04770.1","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).","protein_coding"]
["AT1G05200","Chr1:1504959-1510281","cs","ls","OK",12.8711,4.77533,-1.43046,3.90239,{"v":9.52e-05,"d":"9.52E-05"},0.00513787,"yes","GO:0005217 GO:0071230 GO:0019722 GO:0006874 GO:0071260 GO:0005262 GO:0009611 GO:0006816 GO:0070417 GO:0008066 GO:0071311 GO:0009416 GO:0005515 GO:0005886 GO:0005576 GO:0009507","AT1G05200.1","Encodes a putative glutamate receptor GLR3 with dual localization in plastid and plasma membrane.","protein_coding","GLUTAMATE RECEPTOR 3.4 (GLR3.4)","GLUTAMATE RECEPTOR 3.4 (ATGLR3.4)"]
["AT1G05575","Chr1:1661690-1662187","cs","ls","OK",6.67967,0.29885,-4.48228,3.59884,0.000319637,0.0131369,"yes","GO:0005783 GO:0009738 GO:0002679 GO:0009061 GO:0003674 GO:0009873 GO:0010200","AT1G05575.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G06640","Chr1:2032337-2034018","cs","ls","OK",27.8162,11.7796,-1.23963,3.24618,0.00116966,0.035341,"yes","GO:0005737 GO:0016706 GO:0016126 GO:0055114","AT1G06640.1","encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase","protein_coding"]
["AT1G08830","Chr1:2827060-2838469","cs","ls","OK",91.9587,36.2067,-1.34473,3.63747,0.000275324,0.0118044,"yes","GO:0071280 GO:0071329 GO:0035195 GO:0005515 GO:0071493 GO:0071472 GO:0005829 GO:0071484 GO:0006096 GO:0019430 GO:0005576 GO:0006094 GO:0008270 GO:0071457 GO:0010039 GO:0046686 GO:0004784 GO:0005507 GO:0005634 GO:0042742","AT1G08830.1","Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Regulated by biotic and abiotic stress. Activation of CSD1 in the cytoplasm involves both a CCS-dependent and -independent pathway.","protein_coding","COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1)","COPPER/ZINC SUPEROXIDE DISMUTASE 1 (CSD1)"]
["AT1G11070","Chr1:3690211-3693648","cs","ls","OK",3.63868,0.168965,-4.42862,4.87023,{"v":1.11e-06,"d":"1.11E-06"},0.000122252,"yes","GO:0005737","AT1G11070.1","BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in 152 species: Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).","protein_coding"]
["AT1G12400","Chr1:4221862-4222837","cs","ls","OK",9.77291,0.75876,-3.68707,3.92418,{"v":8.7e-05,"d":"8.70E-05"},0.00479881,"yes","GO:0005634 GO:0006289 GO:0003677","AT1G12400.1","Nucleotide excision repair, TFIIH, subunit TTDA; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide excision repair, TFIIH, subunit TTDA (InterPro:IPR009400); BEST Arabidopsis thaliana protein match is: Nucleotide excision repair, TFIIH, subunit TTDA (TAIR:AT1G62886.1); Has 174 Blast hits to 174 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).","protein_coding"]
["AT1G14250","Chr1:4868451-4871488","cs","ls","OK",27.128,0.135402,-7.64639,8.12411,{"v":4.44e-16,"d":"4.44E-16"},{"v":5.19e-13,"d":"5.19E-13"},"yes","GO:0005773 GO:0016787 GO:0005886","AT1G14250.1","GDA1/CD39 nucleoside phosphatase family protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: GDA1/CD39 nucleoside phosphatase family protein (TAIR:AT1G14240.4); Has 1463 Blast hits to 1456 proteins in 234 species: Archae - 0; Bacteria - 39; Metazoa - 610; Fungi - 315; Plants - 332; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).","protein_coding"]
["AT1G15125","Chr1:5204624-5205912","cs","ls","OK",25.3789,0.88158,-4.84739,6.27813,{"v":3.43e-10,"d":"3.43E-10"},{"v":1.15e-07,"d":"1.15E-07"},"yes","GO:0008757 GO:0005634","AT1G15125.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G68040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G15180","Chr1:5224384-5226702","cs","ls","OK",20.1154,7.55514,-1.41277,3.47191,0.000516773,0.0189621,"yes","GO:0006855 GO:0005886 GO:0015297 GO:0015238","AT1G15180.1","MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 7522 Blast hits to 7471 proteins in 1793 species: Archae - 118; Bacteria - 4822; Metazoa - 149; Fungi - 328; Plants - 1330; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).","protein_coding"]
["AT1G15790","Chr1:5438252-5440087","cs","ls","OK",7.76425,0.69964,-3.47216,3.50734,0.000452611,0.0171991,"yes","GO:0005829 GO:0005634","AT1G15790.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G16130","Chr1:5525490-5528212","cs","ls","OK",0.79653,0.0378134,-4.39676,3.52327,0.000426253,0.0164302,"yes","GO:0010200 GO:0016021 GO:0050832 GO:0004674 GO:0005509 GO:0046777 GO:0005524","AT1G16130.1","wall-associated kinase like","protein_coding","WALL ASSOCIATED KINASE-LIKE 2 (WAKL2)","WALL ASSOCIATED KINASE-LIKE 2 (WAKL2)"]
["AT1G16260","Chr1:5559578-5562113","cs","ls","OK",5.82477,0.788968,-2.88416,4.44305,{"v":8.87e-06,"d":"8.87E-06"},0.000730568,"yes","GO:0006468 GO:0016021 GO:0004674 GO:0005576 GO:0005509 GO:0005524","AT1G16260.1","Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), EGF calcium-binding (InterPro:IPR013091), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Wall-associated kinase family protein (TAIR:AT1G79670.1); Has 123075 Blast hits to 119967 proteins in 4481 species: Archae - 119; Bacteria - 13868; Metazoa - 46954; Fungi - 10147; Plants - 33759; Viruses - 489; Other Eukaryotes - 17739 (source: NCBI BLink).","protein_coding"]
["AT1G17880","Chr1:6152408-6153982","cs","ls","OK",333.766,135.165,-1.30412,4.337,{"v":1.44e-05,"d":"1.44E-05"},0.00108608,"yes","GO:0003700 GO:0009651 GO:0005634 GO:0005515","AT1G17880.1","basic transcription factor 3 (BTF3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex NAC (TAIR:AT1G73230.1); Has 841 Blast hits to 841 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 427; Fungi - 178; Plants - 145; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).","protein_coding","BASIC TRANSCRIPTION FACTOR 3 (BTF3)","(ATBTF3)"]
["AT1G18570","Chr1:6389410-6391267","cs","ls","OK",7.91657,1.47112,-2.42796,4.26308,{"v":2.02e-05,"d":"2.02E-05"},0.00144934,"yes","GO:0010200 GO:0000165 GO:0006612 GO:0031348 GO:0009697 GO:0009651 GO:0009733 GO:0010310 GO:0009737 GO:0016045 GO:0009862 GO:0005634 GO:0009867 GO:0052544 GO:0009682 GO:0050832 GO:0043900 GO:0009759 GO:0010363 GO:0003700 GO:0009625 GO:0009723 GO:0006355 GO","AT1G18570.1","Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.","protein_coding","MYB DOMAIN PROTEIN 51 (MYB51)","(BW51B)"]
["AT1G19960","Chr1:6928038-6928463","cs","ls","OK",83.4389,25.9962,-1.68242,3.34491,0.000823088,0.0277876,"yes","GO:0005575 GO:0009718 GO:0003674","AT1G19960.1","BEST Arabidopsis thaliana protein match is: transmembrane receptors (TAIR:AT2G32140.1); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 23; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).","protein_coding"]
["AT1G20050","Chr1:6949042-6950319","cs","ls","OK",34.1745,11.2943,-1.59733,3.80038,0.000144475,0.00715203,"yes","GO:0016126 GO:0006084 GO:0016132 GO:0047750 GO:0060964 GO:0019932 GO:0005886 GO:0000247","AT1G20050.1","C-8 sterol isomerase that also plays a role in miRNA function.","protein_coding","HYDRA1 (HYD1)","MIRNA ACTION DEFICIENT 4 (MAD4)"]
["AT1G20490","Chr1:7097292-7099695","cs","ls","OK",1.20402,0.075968,-3.98633,3.39964,0.000674756,0.0236236,"yes","GO:0009698 GO:0016207","AT1G20490.1","AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink).","protein_coding"]
["AT1G21100","Chr1:7386838-7388428","cs","ls","OK",6.43332,0.425408,-3.91864,4.52437,{"v":6.06e-06,"d":"6.06E-06"},0.00054165,"yes","GO:0042343 GO:0046983 GO:0005634 GO:0008171 GO:0005829","AT1G21100.1","O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: stem, cotyledon, hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21130.1); Has 3375 Blast hits to 3370 proteins in 588 species: Archae - 3; Bacteria - 947; Metazoa - 107; Fungi - 659; Plants - 1542; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).","protein_coding","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 1 (IGMT1)","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 1 (IGMT1)"]
["AT1G21130","Chr1:7399061-7400605","cs","ls","OK",163.459,44.4982,-1.87711,6.00803,{"v":1.88e-09,"d":"1.88E-09"},{"v":5.25e-07,"d":"5.25E-07"},"yes","GO:0046983 GO:0005634 GO:0008171 GO:0005829","AT1G21130.1","O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, protein dimerization activity, O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21100.1); Has 3382 Blast hits to 3377 proteins in 592 species: Archae - 1; Bacteria - 963; Metazoa - 105; Fungi - 662; Plants - 1542; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).","protein_coding","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 4 (IGMT4)","INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE 4 (IGMT4)"]
["AT1G21250","Chr1:7439265-7442113","cs","ls","OK",12.9755,3.47446,-1.90093,4.57066,{"v":4.86e-06,"d":"4.86E-06"},0.000448908,"yes","GO:0006468 GO:0010363 GO:0005515 GO:0004674 GO:0005773 GO:0009615 GO:0006612 GO:0000165 GO:0050832 GO:0031348 GO:0009867 GO:0005509 GO:0007166 GO:0009862 GO:0005576 GO:0005886 GO:0043069 GO:0009505 GO:0005524 GO:0042742","AT1G21250.1","cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides.","protein_coding","CELL WALL-ASSOCIATED KINASE (WAK1)","(PRO25)"]
["AT1G22630","Chr1:8003314-8004304","cs","ls","OK",152.896,75.2072,-1.02361,3.15035,0.00163072,0.0455169,"yes","GO:0000023 GO:0006098 GO:0009507 GO:0019252","AT1G22630.1","unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","protein_coding"]
["AT1G23020","Chr1:8150069-8153530","cs","ls","OK",4.49933,0.814275,-2.46612,3.76788,0.000164642,0.00802124,"yes","GO:0000293 GO:0050660 GO:0016021 GO:0006833 GO:0006826 GO:0010106 GO:0005506 GO:0055114 GO:0009055","AT1G23020.2","Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.","protein_coding","FERRIC REDUCTION OXIDASE 3 (FRO3)","FERRIC REDUCTION OXIDASE 3 (FRO3)"]
["AT1G23130","Chr1:8200382-8201235","cs","ls","OK",396.11,200.942,-0.979125,3.28681,0.00101328,0.0319687,"yes","GO:0006952 GO:0003674 GO:0009507","AT1G23130.1","Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 31 (TAIR:AT1G70840.1); Has 372 Blast hits to 341 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 372; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G23710","Chr1:8385250-8386426","cs","ls","OK",19.5921,7.41298,-1.40215,3.23902,0.00119943,0.0360209,"yes","GO:0010200 GO:0005634 GO:0010286 GO:0009611 GO:0009612 GO:0002679 GO:0003674 GO:0009873","AT1G23710.1","Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT1G70420.1); Has 288 Blast hits to 282 proteins in 52 species: Archae - 0; Bacteria - 6; Metazoa - 16; Fungi - 11; Plants - 191; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).","protein_coding"]
["AT1G24147","Chr1:8542445-8543474","cs","ls","OK",13.6775,2.8903,-2.24251,3.22549,0.00125756,0.0374833,"yes","GO:0003674 GO:0005576 GO:0008150","AT1G24147.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24148.1); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G25400","Chr1:8911129-8912642","cs","ls","OK",18.6198,5.98812,-1.63666,3.41857,0.00062952,0.0223553,"yes","GO:0010200 GO:0009862 GO:0005634 GO:0006612 GO:0009867 GO:0009625 GO:0031348 GO:0003674 GO:0010363","AT1G25400.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1); Has 21 Blast hits to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G25560","Chr1:8981676-8983041","cs","ls","OK",61.8494,25.8071,-1.26099,3.84459,0.000120754,0.00621005,"yes","GO:0048573 GO:0070838 GO:0003700 GO:0005634 GO:0006355 GO:0030003 GO:0009873","AT1G25560.1","Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT. Novel transcriptional regulator involved in ethylene signaling. Promoter bound by EIN3. EDF1 in turn, binds to promoter elements in ethylene responsive genes.","protein_coding","TEMPRANILLO 1 (TEM1)","TEMPRANILLO 1 (TEM1)"]
["AT1G27180","Chr1:9439858-9446106","cs","ls","OK",1.75201,0.0827939,-4.40335,5.04514,{"v":4.53e-07,"d":"4.53E-07"},{"v":5.88e-05,"d":"5.88E-05"},"yes","GO:0005737 GO:0006952 GO:0007165 GO:0043531","AT1G27180.1","disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: transmembrane receptors;ATP binding (TAIR:AT1G27170.1); Has 83534 Blast hits to 33450 proteins in 1183 species: Archae - 68; Bacteria - 4700; Metazoa - 16188; Fungi - 1127; Plants - 56869; Viruses - 12; Other Eukaryotes - 4570 (source: NCBI BLink).","protein_coding"]
["AT1G27460","Chr1:9534531-9537561","cs","ls","OK",24.859,10.2859,-1.2731,3.67269,0.000240008,0.0106112,"yes","GO:0005634 GO:0008150 GO:0005516 GO:0005886","AT1G27460.1","encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.","protein_coding","NO POLLEN GERMINATION RELATED 1 (NPGR1)","NO POLLEN GERMINATION RELATED 1 (NPGR1)"]
["AT1G28670","Chr1:10074506-10076344","cs","ls","OK",19.1631,4.36641,-2.13381,4.50597,{"v":6.61e-06,"d":"6.61E-06"},0.000582926,"yes","GO:0004091 GO:0006114 GO:0005576 GO:0006629","AT1G28670.1","Arabidopsis thaliana lipase","protein_coding","(ARAB-1)","(ARAB-1)"]
["AT1G29720","Chr1:10393796-10399873","cs","ls","OK",6.58472,0.36805,-4.16115,6.096,{"v":1.09e-09,"d":"1.09E-09"},{"v":3.17e-07,"d":"3.17E-07"},"yes","GO:0004674 GO:0006468 GO:0004713 GO:0005524 GO:0005886","AT1G29720.1","Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G29740.1); Has 108967 Blast hits to 107923 proteins in 3166 species: Archae - 87; Bacteria - 12310; Metazoa - 39616; Fungi - 9390; Plants - 31491; Viruses - 414; Other Eukaryotes - 15659 (source: NCBI BLink).","protein_coding",null,"CELLULOSE SYNTHASE LIKE D2 (CLSD2)"]
["AT1G30190","Chr1:10618965-10619802","cs","ls","OK",3.24155,0.14722,-4.46064,3.57446,0.000350946,0.0141311,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G30190.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34610.1); Has 56 Blast hits to 56 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).","protein_coding"]
["AT1G30510","Chr1:10806984-10809188","cs","ls","OK",17.9184,4.96785,-1.85075,3.79588,0.000147121,0.0072469,"yes","GO:0050661 GO:0050660 GO:0004324 GO:0005507 GO:0042651 GO:0055114 GO:0009507","AT1G30510.2","Encodes a root-type ferredoxin:NADP(H) oxidoreductase.","protein_coding","ROOT FNR 2 (RFNR2)","ROOT FNR 2 (RFNR2)"]
["AT1G31440","Chr1:11255835-11258715","cs","ls","OK",18.4156,3.9361,-2.22609,4.99545,{"v":5.87e-07,"d":"5.87E-07"},{"v":7.19e-05,"d":"7.19E-05"},"yes","GO:0005634 GO:0030276 GO:0012505 GO:0005886","AT1G31440.1","SH3 domain-containing protein; FUNCTIONS IN: clathrin binding; LOCATED IN: endomembrane system, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein (TAIR:AT4G34660.1); Has 3264 Blast hits to 2883 proteins in 317 species: Archae - 14; Bacteria - 271; Metazoa - 1747; Fungi - 174; Plants - 243; Viruses - 12; Other Eukaryotes - 803 (source: NCBI BLink).","protein_coding"]
["AT1G31540","Chr1:11288451-11293753","cs","ls","OK",10.105,2.33734,-2.11213,4.15503,{"v":3.25e-05,"d":"3.25E-05"},0.00207601,"yes","GO:0005737 GO:0017111 GO:0006952 GO:0007165 GO:0043531 GO:0009506","AT1G31540.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G31580","Chr1:11311168-11311989","cs","ls","OK",370.322,1.9669,-7.55671,11.1559,0,0,"yes","GO:0005618 GO:0019684 GO:0005739 GO:0009697 GO:0003674 GO:0042742 GO:0009409 GO:0009814","AT1G31580.1","Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750.","protein_coding","(ECS1)","(ECS1)"]
["AT1G31600","Chr1:11312960-11316473","cs","ls","OK",9.68079,0.777579,-3.63806,4.36005,{"v":1.3e-05,"d":"1.30E-05"},0.000996654,"yes","GO:0005634 GO:0003676 GO:0002098","AT1G31600.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G02485.1); Has 662 Blast hits to 662 proteins in 169 species: Archae - 0; Bacteria - 66; Metazoa - 255; Fungi - 80; Plants - 148; Viruses - 3; Other Eukaryotes - 110 (source: NCBI BLink).","protein_coding","TRNA METHYLTRANSFERASE 9 (TRM9)","ARABIDOPSIS THALIANA TRNA METHYLTRANSFERASE 9 (AtTRM9)"]
["AT1G31835","Chr1:11423058-11423684","cs","ls","OK",17.1453,2.11132,-3.0216,3.98154,{"v":6.85e-05,"d":"6.85E-05"},0.00396277,"yes","GO:0003674 GO:0008150","AT1G31835.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT1G31910","Chr1:11457125-11461825","cs","ls","OK",58.5438,27.2442,-1.10357,3.57339,0.000352391,0.0141605,"yes","GO:0005737 GO:0016126 GO:0019745 GO:0005524","AT1G31910.1","GHMP kinase family protein; FUNCTIONS IN: kinase activity, ATP binding; INVOLVED IN: phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphomevalonate kinase, eukaryotic (InterPro:IPR005916), Phosphomevalonate kinase, ERG8 (InterPro:IPR016005), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); Has 314 Blast hits to 303 proteins in 161 species: Archae - 24; Bacteria - 53; Metazoa - 0; Fungi - 150; Plants - 51; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).","protein_coding"]
["AT1G32400","Chr1:11689105-11691531","cs","ls","OK",69.8355,30.7323,-1.1842,3.73029,0.000191261,0.0090614,"yes","GO:0005794 GO:0005773 GO:0016021 GO:0046786 GO:0005576 GO:0005515 GO:0009506","AT1G32400.1","TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.","protein_coding","TOBAMOVIRUS MULTIPLICATION 2A (TOM2A)","TOBAMOVIRUS MULTIPLICATION 2A (TOM2A)"]
["AT1G32450","Chr1:11715149-11719970","cs","ls","OK",11.3908,4.16448,-1.45166,3.40233,0.00066814,0.0234558,"yes","GO:0006857 GO:0006598 GO:0010167 GO:0015706 GO:0009734 GO:0042398 GO:0006826 GO:0005886 GO:0010106 GO:0015112 GO:0009698","AT1G32450.1","Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.","protein_coding","NITRATE TRANSPORTER 1.5 (NRT1.5)","NITRATE TRANSPORTER 1.5 (NRT1.5)"]
["AT1G33600","Chr1:12180775-12182363","cs","ls","OK",49.79,16.1555,-1.62383,4.96044,{"v":7.03e-07,"d":"7.03E-07"},{"v":8.31e-05,"d":"8.31E-05"},"yes","GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0009505 GO:0031348 GO:0009867 GO:0005886 GO:0035304","AT1G33600.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33590.1); Has 71591 Blast hits to 27926 proteins in 991 species: Archae - 22; Bacteria - 6296; Metazoa - 16731; Fungi - 641; Plants - 43101; Viruses - 4; Other Eukaryotes - 4796 (source: NCBI BLink).","protein_coding"]
["AT1G33610","Chr1:12188909-12190418","cs","ls","OK",4.03364,0.745732,-2.43535,3.22356,0.0012661,0.037681,"yes","GO:0007165 GO:0005886","AT1G33610.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, phloem, root, petiole, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G34200","Chr1:12455707-12457412","cs","ls","OK",8.31897,1.65896,-2.32612,3.89496,{"v":9.82e-05,"d":"9.82E-05"},0.00526934,"yes","GO:0016491 GO:0005576 GO:0055114 GO:0000166","AT1G34200.1","Glyceraldehyde-3-phosphate dehydrogenase-like family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: Oxidoreductase family protein (TAIR:AT4G09670.1); Has 11880 Blast hits to 11879 proteins in 1945 species: Archae - 244; Bacteria - 8550; Metazoa - 214; Fungi - 474; Plants - 94; Viruses - 0; Other Eukaryotes - 2304 (source: NCBI BLink).","protein_coding"]
["AT1G35580","Chr1:13122203-13125264","cs","ls","OK",62.2621,32.0603,-0.957567,3.12372,0.00178578,0.0484946,"yes","GO:0042542 GO:0009805 GO:0004575 GO:0005829 GO:0006520 GO:0009611 GO:0005739 GO:0005987 GO:0048364 GO:0006970 GO:0004564 GO:0005515 GO:0005886 GO:0046686 GO:0005634","AT1G35580.1","CINV1 / A/N-InvG is an alkaline/neutral invertase that breaks sucrose down into fructose and glucose (GH100). The exact localization of CINV1 remains under investigation but there is evidence that fluorescently-tagged CINV1 localizes to the cytoplasm. atinvg mutants have reduced root growth, reduced invertase activity, and increased expression of antioxidant genes under basal conditions. The levels of CINV1 / A/N-InvG transcripts rise in response to a hydrogen peroxide treatment. The protein has been shown to interact with PIP5K9.","protein_coding","CYTOSOLIC INVERTASE 1 (CINV1)","ALKALINE/NEUTRAL INVERTASE G (A/N-InvG)"]
["AT1G35710","Chr1:13220939-13224681","cs","ls","OK",4.17847,0.273011,-3.93595,5.61573,{"v":1.96e-08,"d":"1.96E-08"},{"v":3.74e-06,"d":"3.74E-06"},"yes","GO:0006468 GO:0009814 GO:0000165 GO:0004674 GO:0004713 GO:0005886 GO:0007169 GO:0005524","AT1G35710.1","Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G08850.1); Has 304074 Blast hits to 147448 proteins in 4766 species: Archae - 178; Bacteria - 29187; Metazoa - 106993; Fungi - 12531; Plants - 120860; Viruses - 430; Other Eukaryotes - 33895 (source: NCBI BLink).","protein_coding"]
["AT1G36370","Chr1:13696041-13698639","cs","ls","OK",25.1641,10.8381,-1.21526,3.48758,0.000487421,0.0181876,"yes","GO:0005737 GO:0004372 GO:0006563 GO:0006544 GO:0030170 GO:0046686","AT1G36370.1","Encodes a putative serine hydroxymethyltransferase.","protein_coding","SERINE HYDROXYMETHYLTRANSFERASE 7 (SHM7)","SERINE HYDROXYMETHYLTRANSFERASE 7 (SHM7)"]
["AT1G47250","Chr1:17319176-17321074","cs","ls","OK",23.6242,7.95271,-1.57075,3.44819,0.000564349,0.0204588,"yes","GO:0019773 GO:0005829 GO:0006511 GO:0009506 GO:0004298","AT1G47250.1","Encodes 20S proteasome subunit PAF2 (PAF2).","protein_coding","20S PROTEASOME ALPHA SUBUNIT F2 (PAF2)","20S PROTEASOME ALPHA SUBUNIT F2 (PAF2)"]
["AT1G47395","Chr1:17383033-17383408","cs","ls","OK",46.4864,8.09722,-2.52131,3.62419,0.000289871,0.012217,"yes","GO:0003674 GO:0008150","AT1G47395.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47400.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G49032","Chr1:18138267-18139005","cs","ls","OK",47.2352,0.0724643,-9.34838,6.66702,{"v":2.61e-11,"d":"2.61E-11"},{"v":1.4e-08,"d":"1.40E-08"},"yes","GO:0008150 GO:0003674 GO:0005739","AT1G49032.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G50970","Chr1:18896322-18900268","cs","ls","OK",3.89719,0.799906,-2.28453,3.12853,0.00175681,0.0478386,"yes","GO:0005794 GO:0006810 GO:0005215","AT1G50970.1","Membrane trafficking VPS53 family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50500.1); Has 637 Blast hits to 448 proteins in 205 species: Archae - 2; Bacteria - 36; Metazoa - 221; Fungi - 169; Plants - 87; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).","protein_coding"]
["AT1G51440","Chr1:19070912-19072694","cs","ls","OK",3.07978,0.314892,-3.2899,3.73045,0.000191142,0.0090614,"yes","GO:0008970 GO:0047714 GO:0004806 GO:0006629 GO:0009507","AT1G51440.1","Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.","protein_coding"]
["AT1G52410","Chr1:19520727-19525624","cs","ls","OK",44.3485,19.6973,-1.17089,3.78025,0.000156672,0.00767923,"yes","GO:0009535 GO:0005773 GO:0005634 GO:0005777 GO:0050832 GO:0005509 GO:0005515 GO:0009640","AT1G52410.2","Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers.","protein_coding","TSK-ASSOCIATING PROTEIN 1 (TSA1)","TSK-ASSOCIATING PROTEIN 1 (TSA1)"]
["AT1G52760","Chr1:19651324-19652743","cs","ls","OK",32.81,7.40021,-2.1485,5.10829,{"v":3.25e-07,"d":"3.25E-07"},{"v":4.39e-05,"d":"4.39E-05"},"yes","GO:0046686 GO:0042542 GO:0010043 GO:0003846 GO:0004622 GO:0009506 GO:0009507","AT1G52760.1","Encodes a lysophospholipase 2 (LysoPL2). Involved in tolerance to cadmium-induced oxidative stress. Binds Acyl-CoA-binding protein 2 (ACBP2).","protein_coding","LYSOPHOSPHOLIPASE 2 (LysoPL2)","LYSOPHOSPHOLIPASE 2 (LysoPL2)"]
["AT1G52980","Chr1:19737431-19740348","cs","ls","OK",56.8557,17.2659,-1.71938,5.23785,{"v":1.62e-07,"d":"1.62E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0005634 GO:0003924 GO:0042254 GO:0005525","AT1G52980.1","Encodes a GTPase that belongs to the subfamily of YlqF/YawG GTPases. Functions in Pre-60S ribosomal subunit maturation.","protein_coding","NUCLEAR/NUCLEOLAR GTPASE 2 (AtNug2)","NUCLEAR/NUCLEOLAR GTPASE 2 (Nug2)"]
["AT1G53490","Chr1:19963046-19969757","cs","ls","OK",18.1392,1.11869,-4.01922,3.58253,0.000340284,0.0138422,"yes","GO:0005694 GO:0005634 GO:0051026 GO:0003677","AT1G53490.1","RING/U-box superfamily protein; Has 175 Blast hits to 173 proteins in 83 species: Archae - 2; Bacteria - 14; Metazoa - 69; Fungi - 24; Plants - 38; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).","protein_coding","HOMOLOG OF HUMAN HEI10 ( ENHANCER OF CELL INVASION NO.10) (HEI10)","HOMOLOG OF HUMAN HEI10 ( ENHANCER OF CELL INVASION NO.10) (HEI10)"]
["AT1G55450","Chr1:20704917-20706893","cs","ls","OK",90.7089,5.49025,-4.0463,9.3425,0,0,"yes","GO:0005737 GO:0008168 GO:0008152 GO:0009651","AT1G55450.2","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G54150.1).","protein_coding"]
["AT1G56510","Chr1:21167588-21173632","cs","ls","OK",5.47236,0.442846,-3.62729,5.69769,{"v":1.21e-08,"d":"1.21E-08"},{"v":2.54e-06,"d":"2.54E-06"},"yes","GO:0009817 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT1G56510.1","TIR-NB-LRR protein that confers resistance to four races of Albugo candida.","protein_coding","WHITE RUST RESISTANCE 4 (WRR4)","ACTIVATED DISEASE RESISTANCE 2 (ADR2)"]
["AT1G56520","Chr1:21174663-21178974","cs","ls","OK",4.60617,0.182689,-4.65611,5.41444,{"v":6.15e-08,"d":"6.15E-08"},{"v":1.04e-05,"d":"1.04E-05"},"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT1G56520.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT1G56510.1).","protein_coding"]
["AT1G57990","Chr1:21441504-21442920","cs","ls","OK",45.3643,15.4114,-1.55756,4.51857,{"v":6.23e-06,"d":"6.23E-06"},0.000554204,"yes","GO:0005345 GO:0006863 GO:0009507 GO:0005886","AT1G57990.1","Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.","protein_coding","PURINE PERMEASE 18 (PUP18)","PURINE PERMEASE 18 (PUP18)"]
["AT1G58280","Chr1:21620330-21622611","cs","ls","OK",13.9925,2.53995,-2.46178,3.53549,0.000407022,0.0158209,"yes","GO:0005576 GO:0009507","AT1G58280.2","Phosphoglycerate mutase family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT5G64460.8); Has 412 Blast hits to 412 proteins in 84 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 152; Plants - 162; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).","protein_coding"]
["AT1G58290","Chr1:21623725-21626200","cs","ls","OK",615.698,304.831,-1.01421,3.30106,0.000963191,0.03074,"yes","GO:0050661 GO:0015995 GO:0006783 GO:0008883 GO:0000302 GO:0055072 GO:0009416 GO:0005515 GO:0010039 GO:0055114 GO:0009507","AT1G58290.1","Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis.","protein_coding","(HEMA1)","ARABIDOPSIS THALIANA HEMA 1 (AtHEMA1)"]
["AT1G58684","Chr1:21769761-21771229","cs","ls","OK",128.53,31.9082,-2.01011,6.23039,{"v":4.65e-10,"d":"4.65E-10"},{"v":1.48e-07,"d":"1.48E-07"},"yes","GO:0022627 GO:0005618 GO:0005634 GO:0003735 GO:0003723 GO:0006412 GO:0009506","AT1G58684.1","Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink).","protein_coding"]
["AT1G58807","Chr1:21780184-21784314","cs","ls","OK",28.053,9.46598,-1.56733,4.80559,{"v":1.54e-06,"d":"1.54E-06"},0.000162923,"yes","GO:0006952 GO:0005575 GO:0043531","AT1G58807.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G59218.2); Has 16558 Blast hits to 15019 proteins in 550 species: Archae - 4; Bacteria - 833; Metazoa - 644; Fungi - 107; Plants - 14810; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).","protein_coding"]
["AT1G58848","Chr1:21791782-21797050","cs","ls","OK",22.428,9.53422,-1.23411,3.76055,0.000169537,0.00818853,"yes","GO:0006952 GO:0043531","AT1G58848.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G59218.2); Has 17671 Blast hits to 15071 proteins in 568 species: Archae - 4; Bacteria - 896; Metazoa - 587; Fungi - 110; Plants - 15906; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).","protein_coding"]
["AT1G58983","Chr1:21806019-21807487","cs","ls","OK",128.53,31.9082,-2.01011,6.23039,{"v":4.65e-10,"d":"4.65E-10"},{"v":1.48e-07,"d":"1.48E-07"},"yes","GO:0022627 GO:0005618 GO:0005634 GO:0003735 GO:0003723 GO:0006412 GO:0009506","AT1G58983.1","Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, cell wall; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink).","protein_coding"]
["AT1G59124","Chr1:21816442-21820572","cs","ls","OK",28.1543,9.46598,-1.57253,4.88193,{"v":1.05e-06,"d":"1.05E-06"},0.000116505,"yes","GO:0006952 GO:0005575 GO:0043531","AT1G59124.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58807.2); Has 15438 Blast hits to 14768 proteins in 545 species: Archae - 4; Bacteria - 810; Metazoa - 616; Fungi - 105; Plants - 13760; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).","protein_coding"]
["AT1G59218","Chr1:21828032-21832708","cs","ls","OK",20.8187,10.138,-1.03811,3.14975,0.0016341,0.0455169,"yes","GO:0006952 GO:0043531","AT1G59218.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58848.2); Has 17671 Blast hits to 15071 proteins in 568 species: Archae - 4; Bacteria - 896; Metazoa - 587; Fungi - 110; Plants - 15906; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).","protein_coding"]
["AT1G59359","Chr1:21842303-21843745","cs","ls","OK",133.996,32.9734,-2.02282,6.26978,{"v":3.62e-10,"d":"3.62E-10"},{"v":1.2e-07,"d":"1.20E-07"},"yes","GO:0022627 GO:0005618 GO:0005634 GO:0003735 GO:0003723 GO:0006412 GO:0009506","AT1G59359.1","Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cell wall, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G58983.1); Has 10014 Blast hits to 9456 proteins in 2909 species: Archae - 262; Bacteria - 5182; Metazoa - 1330; Fungi - 465; Plants - 259; Viruses - 14; Other Eukaryotes - 2502 (source: NCBI BLink).","protein_coding"]
["AT1G59640","Chr1:21909174-21911201","cs","ls","OK",2.64695,0.184473,-3.84285,3.42723,0.00060978,0.0218104,"yes","GO:0009827 GO:0048443 GO:0048446 GO:0010162 GO:0009753 GO:0006355 GO:0003700 GO:0005634 GO:0009860 GO:0009694 GO:0009062 GO:0048481","AT1G59640.2","A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.","protein_coding","BIG PETAL P (BPEP)","(ZCW32)"]
["AT1G59700","Chr1:21936295-21937959","cs","ls","OK",8.37103,1.21068,-2.78959,3.84278,0.000121651,0.00622395,"yes","GO:0005737 GO:0010583 GO:0004364 GO:0009407","AT1G59700.1","Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).","protein_coding","GLUTATHIONE S-TRANSFERASE TAU 16 (GSTU16)","GLUTATHIONE S-TRANSFERASE TAU 16 (GSTU16)"]
["AT1G60710","Chr1:22354752-22356761","cs","ls","OK",51.505,24.5448,-1.06929,3.20264,0.00136174,0.0395781,"yes","GO:0009805 GO:0005829 GO:0009611 GO:0009963 GO:0046686 GO:0009651 GO:0006094 GO:0006096 GO:0055114 GO:0016491","AT1G60710.1","Encodes ATB2.","protein_coding","(ATB2)","(ATB2)"]
["AT1G61190","Chr1:22557601-22560687","cs","ls","OK",33.0603,8.26018,-2.00085,5.99534,{"v":2.03e-09,"d":"2.03E-09"},{"v":5.6e-07,"d":"5.60E-07"},"yes","GO:0006952 GO:0005575 GO:0043531 GO:0006499","AT1G61190.1","Putative CC-NB-LRR resistance gene. It's ortholog in ecotype Wei-0 RPP39 (R_190-Wei-0, accession number JQ045573, PMID:22359513) has been shown experimentally to recognize the effector ATR39-1 produced by Hyaloperonospora arabidopsidis (Hpa).","protein_coding",null,"RESISTANCE TO PERONOSPORA PARASITICA 39 (RPP39)"]
["AT1G61300","Chr1:22607465-22610273","cs","ls","OK",14.8341,6.05084,-1.29371,3.52203,0.000428249,0.0164433,"yes","GO:0006952 GO:0005829 GO:0006499 GO:0043531","AT1G61300.1","LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G61310.1); Has 27714 Blast hits to 22073 proteins in 822 species: Archae - 18; Bacteria - 5358; Metazoa - 4578; Fungi - 354; Plants - 16806; Viruses - 2; Other Eukaryotes - 598 (source: NCBI BLink).","protein_coding"]
["AT1G61470","Chr1:22678184-22679021","cs","ls","OK",6.28797,0.479828,-3.71201,3.82594,0.000130274,0.00653049,"yes","GO:0005634 GO:0004540 GO:0003676 GO:0009451","AT1G61470.1","Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G27820.1); Has 904 Blast hits to 904 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 275; Fungi - 148; Plants - 359; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).","protein_coding"]
["AT1G62480","Chr1:23128704-23129759","cs","ls","OK",186.994,50.014,-1.90259,5.56272,{"v":2.66e-08,"d":"2.66E-08"},{"v":4.93e-06,"d":"4.93E-06"},"yes","GO:0046686 GO:0009651 GO:0007030 GO:0006816 GO:0005575","AT1G62480.1","Vacuolar calcium-binding protein-related; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 21787 Blast hits to 9668 proteins in 1087 species: Archae - 111; Bacteria - 3941; Metazoa - 6730; Fungi - 2179; Plants - 741; Viruses - 179; Other Eukaryotes - 7906 (source: NCBI BLink).","protein_coding"]
["AT1G62850","Chr1:23271415-23274302","cs","ls","OK",20.8556,5.99538,-1.79851,4.2624,{"v":2.02e-05,"d":"2.02E-05"},0.00144934,"yes","GO:0006415 GO:0003747 GO:0005739","AT1G62850.2","Class I peptide chain release factor; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class I peptide chain release factor (InterPro:IPR000352); Has 2349 Blast hits to 2349 proteins in 1057 species: Archae - 0; Bacteria - 1715; Metazoa - 148; Fungi - 110; Plants - 54; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).","protein_coding"]
["AT1G63350","Chr1:23494934-23497631","cs","ls","OK",1.16874,0.136928,-3.09347,3.20057,0.00137155,0.039805,"yes","GO:0006952 GO:0005575 GO:0043531 GO:0006499","AT1G63350.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G62630.1); Has 18724 Blast hits to 16763 proteins in 698 species: Archae - 14; Bacteria - 926; Metazoa - 3029; Fungi - 209; Plants - 14107; Viruses - 4; Other Eukaryotes - 435 (source: NCBI BLink).","protein_coding"]
["AT1G63880","Chr1:23712275-23716124","cs","ls","OK",20.6804,0.0565372,-8.51485,8.49793,0,0,"yes","GO:0050832 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT1G63880.1","Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.","protein_coding"]
["AT1G64180","Chr1:23821515-23824359","cs","ls","OK",5.87932,1.3133,-2.16245,3.48761,0.000487358,0.0181876,"yes","GO:0005737 GO:0003674 GO:0008150 GO:0009506","AT1G64180.1","intracellular protein transport protein USO1-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41620.1); Has 2997 Blast hits to 2464 proteins in 355 species: Archae - 17; Bacteria - 245; Metazoa - 1676; Fungi - 267; Plants - 224; Viruses - 17; Other Eukaryotes - 551 (source: NCBI BLink).","protein_coding"]
["AT1G64490","Chr1:23952132-23952713","cs","ls","OK",54.9518,17.5137,-1.64968,3.72526,0.000195115,0.00915659,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G64490.1","DEK, chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK, chromatin associated protein (TAIR:AT5G42060.1); Has 63 Blast hits to 62 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT1G65190","Chr1:24215643-24217328","cs","ls","OK",28.0664,2.54793,-3.46145,6.86772,{"v":6.52e-12,"d":"6.52E-12"},{"v":4.32e-09,"d":"4.32E-09"},"yes","GO:0005575 GO:0006468 GO:0005524 GO:0004672","AT1G65190.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G65250.1); Has 21418 Blast hits to 21199 proteins in 731 species: Archae - 0; Bacteria - 680; Metazoa - 1172; Fungi - 120; Plants - 18955; Viruses - 11; Other Eukaryotes - 480 (source: NCBI BLink).","protein_coding"]
["AT1G65370","Chr1:24284468-24286145","cs","ls","OK",17.0926,0.126942,-7.07306,6.60519,{"v":3.97e-11,"d":"3.97E-11"},{"v":1.92e-08,"d":"1.92E-08"},"yes","GO:0008150 GO:0005634 GO:0003674","AT1G65370.1","TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G65150.2); Has 460 Blast hits to 456 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","protein_coding"]
["AT1G65800","Chr1:24473120-24476715","cs","ls","OK",11.7642,3.17867,-1.88791,4.53832,{"v":5.67e-06,"d":"5.67E-06"},0.00051873,"yes","GO:0031625 GO:0005829 GO:0034613 GO:0030246 GO:0004675 GO:0004713 GO:0005886 GO:0046777 GO:0005524 GO:0048544","AT1G65800.1","encodes a putative receptor-like serine/threonine protein kinases that is similar to brassica self-incompatibility (S) locus. expressed in specifically in cotyledons, leaves, and sepals, in correlation with the maturation of these structures.","protein_coding","RECEPTOR KINASE 2 (RK2)","RECEPTOR KINASE 2 (RK2)"]
["AT1G66090","Chr1:24602145-24604763","cs","ls","OK",9.38491,0.255435,-5.19931,5.8413,{"v":5.18e-09,"d":"5.18E-09"},{"v":1.27e-06,"d":"1.27E-06"},"yes","GO:0010363 GO:0009863 GO:0006612 GO:0009867 GO:0017111 GO:0050832 GO:0031348 GO:0009697 GO:0043531 GO:0009507 GO:0010200","AT1G66090.1","Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G56540.1); Has 7229 Blast hits to 7084 proteins in 242 species: Archae - 0; Bacteria - 86; Metazoa - 1; Fungi - 7; Plants - 7129; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","protein_coding"]
["AT1G66540","Chr1:24824458-24826670","cs","ls","OK",2.7793,0.321283,-3.1128,3.26967,0.00107673,0.0331898,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT1G66540.1","Cytochrome P450 superfamily protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 3 (TAIR:AT4G37340.1); Has 36477 Blast hits to 36375 proteins in 1869 species: Archae - 65; Bacteria - 6588; Metazoa - 11586; Fungi - 7386; Plants - 9188; Viruses - 3; Other Eukaryotes - 1661 (source: NCBI BLink).","protein_coding"]
["AT1G66980","Chr1:24997308-25001983","cs","ls","OK",22.2017,4.76275,-2.2208,6.48147,{"v":9.08e-11,"d":"9.08E-11"},{"v":3.92e-08,"d":"3.92E-08"},"yes","GO:0006468 GO:0006629 GO:0008889 GO:0016556 GO:0006952 GO:0004674 GO:0006071 GO:0004713 GO:0005886 GO:0000023 GO:0005524 GO:0019252","AT1G66980.1","Encodes SNC4 (suppressor of npr1-1, constitutive 4), an atypical receptor-like kinase with two predicted extracellular glycerophosphoryl diester phosphodiesterase domains.","protein_coding","SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4 (SNC4)","GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE (GDPD) LIKE 2 (GDPDL2)"]
["AT1G67860","Chr1:25444804-25445263","cs","ls","OK",86.3615,19.3576,-2.15749,4.4273,{"v":9.54e-06,"d":"9.54E-06"},0.000766874,"yes","GO:0005575 GO:0003674 GO:0008150","AT1G67860.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67865.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G67865","Chr1:25446288-25446737","cs","ls","OK",67.8052,13.4428,-2.33457,4.19342,{"v":2.75e-05,"d":"2.75E-05"},0.00181216,"yes","GO:0005575 GO:0050832 GO:0003674","AT1G67865.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67860.1); Has 13 Blast hits to 13 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G68440","Chr1:25658032-25659273","cs","ls","OK",29.1036,9.19643,-1.66205,4.25355,{"v":2.1e-05,"d":"2.10E-05"},0.00148113,"yes","GO:0042398 GO:0009698 GO:0006598 GO:0003674 GO:0005634","AT1G68440.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).","protein_coding"]
["AT1G68840","Chr1:25880322-25882222","cs","ls","OK",63.5006,21.0618,-1.59214,4.7774,{"v":1.78e-06,"d":"1.78E-06"},0.000183597,"yes","GO:0010167 GO:0015706 GO:0003700 GO:0005634 GO:0045892 GO:0010200","AT1G68840.1","Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)","protein_coding","RELATED TO ABI3/VP1 2 (RAV2)","RELATED TO ABI3/VP1 2 (RAV2)"]
["AT1G69550","Chr1:26148020-26153555","cs","ls","OK",3.67877,0.511234,-2.84717,5.08747,{"v":3.63e-07,"d":"3.63E-07"},{"v":4.87e-05,"d":"4.87E-05"},"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT1G69550.1","disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).","protein_coding"]
["AT1G69730","Chr1:26228631-26231339","cs","ls","OK",7.65355,2.73885,-1.48256,3.16432,0.00155448,0.0440828,"yes","GO:0006468 GO:0016021 GO:0004674 GO:0005576 GO:0005509 GO:0005524","AT1G69730.1","Wall-associated kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Wall-associated kinase (InterPro:IPR013695), EGF-like calcium-binding, conserved site (InterPro:IPR018097), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: WALL ASSOCIATED KINASE (WAK)-LIKE 10 (TAIR:AT1G79680.1); Has 118696 Blast hits to 117097 proteins in 4295 species: Archae - 105; Bacteria - 13298; Metazoa - 44157; Fungi - 9958; Plants - 33203; Viruses - 492; Other Eukaryotes - 17483 (source: NCBI BLink).","protein_coding"]
["AT1G72900","Chr1:27432194-27433782","cs","ls","OK",19.0031,5.09818,-1.89818,4.0405,{"v":5.33e-05,"d":"5.33E-05"},0.00318916,"yes","GO:0005737 GO:0010363 GO:0009862 GO:0006612 GO:0009610 GO:0009625 GO:0031348 GO:0043531 GO:0009693 GO:0043069","AT1G72900.1","Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72940.1); Has 4486 Blast hits to 4351 proteins in 152 species: Archae - 0; Bacteria - 27; Metazoa - 4; Fungi - 0; Plants - 4454; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT1G73330","Chr1:27568717-27569717","cs","ls","OK",7.6951,0.448226,-4.10164,4.45362,{"v":8.44e-06,"d":"8.44E-06"},0.000707221,"yes","GO:0005576 GO:0009414 GO:0004866","AT1G73330.1","encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.","protein_coding","DROUGHT-REPRESSED 4 (DR4)","DROUGHT-REPRESSED 4 (DR4)"]
["AT1G73805","Chr1:27745426-27749178","cs","ls","OK",5.56545,1.29297,-2.10581,3.35231,0.000801408,0.0271944,"yes","GO:0009595 GO:0009867 GO:0006612 GO:0031348 GO:0042742 GO:0001666 GO:0043565 GO:0010310 GO:0080142 GO:0005634 GO:0000165 GO:0010112 GO:0009581 GO:0050832 GO:0035304 GO:0010200 GO:0010363 GO:0003700 GO:0006355 GO:0002237 GO:0005516 GO:0009862","AT1G73805.1","Encodes SAR Deficient 1 (SARD1), a key regulator for ICS1 (Isochorismate Synthase 1) induction and salicylic acid (SA) synthesis.","protein_coding","SAR DEFICIENT 1 (SARD1)","SAR DEFICIENT 1 (SARD1)"]
["AT1G73885","Chr1:27786863-27787708","cs","ls","OK",287.125,144.595,-0.989664,3.20322,0.00135901,0.0395781,"yes","GO:0009535 GO:0008150 GO:0003674","AT1G73885.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G75680","Chr1:28417051-28419529","cs","ls","OK",50.7505,24.0907,-1.07495,3.44726,0.000566302,0.0204766,"yes","GO:0016126 GO:0009664 GO:0009832 GO:0006084 GO:0048767 GO:0009736 GO:0010075 GO:0005982 GO:0016132 GO:0000271 GO:0009825 GO:0043481 GO:0000272 GO:0007389 GO:0009932 GO:0009926 GO:0005886 GO:0004553 GO:0048653 GO:0005576","AT1G75680.1","glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B5 (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).","protein_coding","GLYCOSYL HYDROLASE 9B7 (GH9B7)","GLYCOSYL HYDROLASE 9B7 (GH9B7)"]
["AT1G78270","Chr1:29450562-29452417","cs","ls","OK",8.07824,2.30688,-1.80809,3.40298,0.000666547,0.0234558,"yes","GO:0005575 GO:0015020 GO:0008152","AT1G78270.1","UDP-glucosyl transferase 85A4 (UGT85A4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G22400.1); Has 7993 Blast hits to 7875 proteins in 425 species: Archae - 0; Bacteria - 192; Metazoa - 2327; Fungi - 67; Plants - 5218; Viruses - 120; Other Eukaryotes - 69 (source: NCBI BLink).","protein_coding","UDP-GLUCOSYL TRANSFERASE 85A4 (UGT85A4)","UDP-GLUCOSYL TRANSFERASE 85A4 (AtUGT85A4)"]
["AT1G78410","Chr1:29502581-29503241","cs","ls","OK",6.11379,0.622459,-3.29602,3.30966,0.0009341,0.030102,"yes","GO:0050832 GO:0009595 GO:0010310 GO:0010363 GO:0009862 GO:0006612 GO:0000165 GO:0009611 GO:0009723 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0003674 GO:0042742 GO:0006979 GO:0010200","AT1G78410.1","VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G17147.1); Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT1G78460","Chr1:29518315-29519323","cs","ls","OK",28.6694,7.45317,-1.94359,4.02985,{"v":5.58e-05,"d":"5.58E-05"},0.00332714,"yes","GO:0005737 GO:0008150","AT1G78460.1","SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G17100.1); Has 1017 Blast hits to 990 proteins in 102 species: Archae - 6; Bacteria - 81; Metazoa - 199; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 584 (source: NCBI BLink).","protein_coding"]
["AT1G78830","Chr1:29636954-29638552","cs","ls","OK",99.8775,45.7971,-1.1249,3.71774,0.000201014,0.00925793,"yes","GO:0048046 GO:0005794 GO:0030246 GO:0009506 GO:0009505","AT1G78830.1","Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: apoplast, cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), PAN-2 domain (InterPro:IPR013227); BEST Arabidopsis thaliana protein match is: D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (TAIR:AT1G78820.1); Has 2662 Blast hits to 2603 proteins in 85 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 2651; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT1G78850","Chr1:29641925-29643431","cs","ls","OK",108.535,49.8108,-1.12363,3.7187,0.00020025,0.00924457,"yes","GO:0005794 GO:0005829 GO:0030246 GO:0005774 GO:0048046 GO:0005886 GO:0009505","AT1G78850.1","curculin-like (mannose-binding) lectin family protein, low similarity to ser/thr protein kinase from Zea mays (GI:2598067); contains Pfam lectin (probable mannose binding) domain PF01453 but not the protein kinase domain of the Z. mays protein","protein_coding"]
["AT1G80920","Chr1:30400733-30404690","cs","ls","OK",175.622,80.7817,-1.12037,3.42437,0.000616234,0.0220015,"yes","GO:0006457 GO:0009570 GO:0005634 GO:0051082 GO:0009416 GO:0031072","AT1G80920.1","A nuclear encoded soluble protein found in the chloroplast stroma.","protein_coding","(J8)","(J8)"]
["AT1G80940","Chr1:30410700-30412289","cs","ls","OK",53.2084,18.592,-1.51697,4.0091,{"v":6.09e-05,"d":"6.09E-05"},0.00361166,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G80940.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT1G80970","Chr1:30420101-30421995","cs","ls","OK",2.53878,0.141194,-4.16839,3.28369,0.00102457,0.0321815,"yes","GO:0008150 GO:0005634 GO:0003674","AT1G80970.2","XH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH domain-containing protein (TAIR:AT1G80990.1).","protein_coding"]
["AT2G02360","Chr2:619405-620768","cs","ls","OK",9.97652,0.193324,-5.68944,5.51746,{"v":3.44e-08,"d":"3.44E-08"},{"v":6.15e-06,"d":"6.15E-06"},"yes","GO:0005634 GO:0030246","AT2G02360.1","phloem protein 2-B10 (PP2-B10); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 572 Blast hits to 558 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 567; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","PHLOEM PROTEIN 2-B10 (PP2-B10)","PHLOEM PROTEIN 2-B10 (PP2-B10)"]
["AT2G02960","Chr2:862086-864447","cs","ls","OK",8.04482,1.14885,-2.80787,3.6607,0.000251532,0.0110468,"yes","GO:0005634 GO:0008270","AT2G02960.5","RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G14260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G03710","Chr2:1129267-1131838","cs","ls","OK",4.78009,0.145412,-5.03882,4.1095,{"v":3.97e-05,"d":"3.97E-05"},0.00246748,"yes","GO:0048442 GO:0048443 GO:0048440 GO:0048441 GO:0010076 GO:0003700 GO:0005634 GO:0043481 GO:0006355 GO:0010048 GO:0046983","AT2G03710.1","This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.","protein_coding","SEPALLATA 4 (SEP4)","AGAMOUS-LIKE 3 (AGL3)"]
["AT2G03980","Chr2:1259198-1262552","cs","ls","OK",9.02648,0.876061,-3.36506,4.76653,{"v":1.87e-06,"d":"1.87E-06"},0.000191783,"yes","GO:0004091 GO:0005576 GO:0006629","AT2G03980.1","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G04020.1); Has 3198 Blast hits to 3166 proteins in 143 species: Archae - 0; Bacteria - 189; Metazoa - 0; Fungi - 13; Plants - 2979; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).","protein_coding"]
["AT2G04032","Chr2:1289831-1291383","cs","ls","OK",6.81006,1.76708,-1.9463,3.12163,0.00179852,0.0487738,"yes","GO:0016021 GO:0005385 GO:0006833 GO:0010048 GO:0006826 GO:0071577 GO:0005886 GO:0010106","AT2G04032.1","zinc transporter 7 precursor (ZIP7); FUNCTIONS IN: cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cation transport, zinc ion transport, metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron-regulated transporter 1 (TAIR:AT4G19690.2); Has 1848 Blast hits to 1741 proteins in 306 species: Archae - 0; Bacteria - 134; Metazoa - 385; Fungi - 602; Plants - 510; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).","protein_coding","ZINC TRANSPORTER 7 PRECURSOR (ZIP7)","ZINC TRANSPORTER 7 PRECURSOR (ZIP7)"]
["AT2G04495","Chr2:1564165-1565106","cs","ls","OK",2.32786,0.170055,-3.77493,3.22631,0.00125395,0.0374319,"yes","GO:0003674 GO:0008150","AT2G04495.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04515.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G05540","Chr2:2033155-2034217","cs","ls","OK",46.0854,7.21339,-2.67556,4.94722,{"v":7.53e-07,"d":"7.53E-07"},{"v":8.79e-05,"d":"8.79E-05"},"yes","GO:0005576","AT2G05540.1","Glycine-rich protein family; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.4); Has 20980 Blast hits to 7546 proteins in 779 species: Archae - 6; Bacteria - 3254; Metazoa - 9284; Fungi - 1649; Plants - 4555; Viruses - 118; Other Eukaryotes - 2114 (source: NCBI BLink).","protein_coding"]
["AT2G14045","Chr2:5906549-5908374","cs","ls","OK",76.2137,16.6344,-2.19588,5.06702,{"v":4.04e-07,"d":"4.04E-07"},{"v":5.35e-05,"d":"5.35E-05"},"yes","GO:0008150 GO:0005634 GO:0003674","AT2G14045.1","unknown protein; Has 257 Blast hits to 257 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).","protein_coding"]
["AT2G14080","Chr2:5925185-5929600","cs","ls","OK",6.28192,0.53033,-3.56624,5.99091,{"v":2.09e-09,"d":"2.09E-09"},{"v":5.67e-07,"d":"5.67E-07"},"yes","GO:0005737 GO:0006952 GO:0017111 GO:0043531 GO:0007165","AT2G14080.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 59112 Blast hits to 27121 proteins in 1046 species: Archae - 26; Bacteria - 3020; Metazoa - 5754; Fungi - 417; Plants - 46550; Viruses - 22; Other Eukaryotes - 3323 (source: NCBI BLink).","protein_coding"]
["AT2G14610","Chr2:6241703-6242463","cs","ls","OK",99.1248,0.780613,-6.98849,8.02021,{"v":1.11e-15,"d":"1.11E-15"},{"v":1.16e-12,"d":"1.16E-12"},"yes","GO:0050832 GO:0009595 GO:0010310 GO:0010363 GO:0010200 GO:0005618 GO:0009862 GO:0006612 GO:0000165 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0003674 GO:0042742 GO:0009414 GO:0005576 GO:0034976 GO:0010266","AT2G14610.1","PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.","protein_coding","PATHOGENESIS-RELATED GENE 1 (PR1)","PATHOGENESIS-RELATED GENE 1 (PR1)"]
["AT2G14880","Chr2:6393331-6394938","cs","ls","OK",165.212,81.792,-1.01428,3.29849,0.000972057,0.0309634,"yes","GO:0008150 GO:0005634 GO:0003674","AT2G14880.1","SWIB/MDM2 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT4G34290.1); Has 1208 Blast hits to 1119 proteins in 254 species: Archae - 0; Bacteria - 214; Metazoa - 140; Fungi - 207; Plants - 389; Viruses - 11; Other Eukaryotes - 247 (source: NCBI BLink).","protein_coding"]
["AT2G15080","Chr2:6533686-6536995","cs","ls","OK",5.23682,1.15916,-2.17561,4.36419,{"v":1.28e-05,"d":"1.28E-05"},0.000981715,"yes","GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0031348 GO:0009867 GO:0016301 GO:0035304 GO:0005576","AT2G15080.1","receptor like protein 19 (RLP19); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 53 (TAIR:AT5G27060.1); Has 148554 Blast hits to 34281 proteins in 1300 species: Archae - 57; Bacteria - 11858; Metazoa - 32168; Fungi - 1631; Plants - 90272; Viruses - 42; Other Eukaryotes - 12526 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 19 (RLP19)","RECEPTOR LIKE PROTEIN 19 (RLP19)"]
["AT2G15230","Chr2:6612580-6615395","cs","ls","OK",7.00762,1.68496,-2.05621,3.33073,0.000866191,0.0285627,"yes","GO:0004806 GO:0006629 GO:0005615","AT2G15230.1","Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular.","protein_coding","LIPASE 1 (LIP1)","LIPASE 1 (LIP1)"]
["AT2G15880","Chr2:6918038-6920319","cs","ls","OK",3.1436,0.464635,-2.75825,3.70446,0.000211841,0.00960106,"yes","GO:0005634 GO:0005199","AT2G15880.1","Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G33970.1); Has 436796 Blast hits to 106000 proteins in 3186 species: Archae - 830; Bacteria - 85977; Metazoa - 139472; Fungi - 51372; Plants - 100247; Viruses - 9779; Other Eukaryotes - 49119 (source: NCBI BLink).","protein_coding"]
["AT2G16050","Chr2:6980449-6982101","cs","ls","OK",1.90795,0.0662628,-4.84768,3.19834,0.00138223,0.0400563,"yes","GO:0005575 GO:0003674 GO:0008150","AT2G16050.1","Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G20990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G16660","Chr2:7218705-7221625","cs","ls","OK",71.2217,24.3528,-1.54823,4.99176,{"v":5.98e-07,"d":"5.98E-07"},{"v":7.27e-05,"d":"7.27E-05"},"yes","GO:0009507","AT2G16660.1","Major facilitator superfamily protein; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 3381 Blast hits to 3270 proteins in 872 species: Archae - 26; Bacteria - 1620; Metazoa - 6; Fungi - 314; Plants - 598; Viruses - 0; Other Eukaryotes - 817 (source: NCBI BLink).","protein_coding"]
["AT2G18150","Chr2:7892132-7893653","cs","ls","OK",4.36095,0.139968,-4.96148,4.40463,{"v":1.06e-05,"d":"1.06E-05"},0.00083473,"yes","GO:0020037 GO:0005618 GO:0009624 GO:0004601 GO:0005576 GO:0006979 GO:0055114","AT2G18150.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction, response to nematode; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18140.1); Has 4666 Blast hits to 4632 proteins in 286 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 258; Plants - 4338; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).","protein_coding"]
["AT2G18690","Chr2:8097419-8098827","cs","ls","OK",3.2763,0.423496,-2.95165,3.42278,0.000619848,0.0220908,"yes","GO:0006612 GO:0010363 GO:0009863 GO:0016020 GO:0006569 GO:0009684 GO:0050832 GO:0003674 GO:0009507 GO:0043069 GO:0010200","AT2G18690.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF975 (InterPro:IPR010380); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18680.1); Has 213 Blast hits to 211 proteins in 20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G19400","Chr2:8399156-8402601","cs","ls","OK",6.80934,1.50383,-2.17888,3.72162,0.00019795,0.00922418,"yes","GO:0004674 GO:0005634 GO:0006468 GO:0005524","AT2G19400.1","AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT4G33080.1); Has 103456 Blast hits to 101588 proteins in 3064 species: Archae - 123; Bacteria - 12796; Metazoa - 37501; Fungi - 11276; Plants - 22937; Viruses - 407; Other Eukaryotes - 18416 (source: NCBI BLink).","protein_coding"]
["AT2G20670","Chr2:8911859-8913534","cs","ls","OK",336.26,140.66,-1.25737,4.26778,{"v":1.97e-05,"d":"1.97E-05"},0.00143037,"yes","GO:0005634 GO:0009507","AT2G20670.1","Protein of unknown function (DUF506) ; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G32480.1); Has 375 Blast hits to 373 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 373; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding"]
["AT2G20750","Chr2:8941118-8942689","cs","ls","OK",4.51513,0.412496,-3.45232,3.61036,0.000305778,0.0126458,"yes","GO:0009826 GO:0005576 GO:0019953 GO:0009828","AT2G20750.1","member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)","protein_coding","EXPANSIN B1 (EXPB1)","EXPANSIN B1 (ATEXPB1)"]
["AT2G20850","Chr2:8975347-8979379","cs","ls","OK",9.15277,3.55241,-1.36541,3.32596,0.000881147,0.0289597,"yes","GO:0009506 GO:0006468 GO:0004713 GO:0005524","AT2G20850.1","STRUBBELIG-receptor family 1 (SRF1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 150345 Blast hits to 104966 proteins in 4098 species: Archae - 89; Bacteria - 11039; Metazoa - 39266; Fungi - 7103; Plants - 77215; Viruses - 282; Other Eukaryotes - 15351 (source: NCBI BLink).","protein_coding","STRUBBELIG-RECEPTOR FAMILY 1 (SRF1)","STRUBBELIG-RECEPTOR FAMILY 1 (SRF1)"]
["AT2G21140","Chr2:9060624-9062091","cs","ls","OK",36.9919,11.3262,-1.70754,4.38734,{"v":1.15e-05,"d":"1.15E-05"},0.000893244,"yes","GO:0005618 GO:0009664","AT2G21140.1","Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques.","protein_coding","PROLINE-RICH PROTEIN 2 (PRP2)","PROLINE-RICH PROTEIN 2 (PRP2)"]
["AT2G21860","Chr2:9318257-9320002","cs","ls","OK",65.3176,13.5106,-2.27338,6.63029,{"v":3.35e-11,"d":"3.35E-11"},{"v":1.71e-08,"d":"1.71E-08"},"yes","GO:0016126 GO:0003674 GO:0009507","AT2G21860.1","violaxanthin de-epoxidase-related; BEST Arabidopsis thaliana protein match is: non-photochemical quenching 1 (TAIR:AT1G08550.2); Has 151 Blast hits to 151 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).","protein_coding"]
["AT2G23130","Chr2:9844298-9845385","cs","ls","OK",93.2394,15.8248,-2.55875,5.04939,{"v":4.43e-07,"d":"4.43E-07"},{"v":5.79e-05,"d":"5.79E-05"},"yes","GO:0010583 GO:0031225 GO:0003674 GO:0005886","AT2G23130.1","AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.","protein_coding","ARABINOGALACTAN PROTEIN 17 (AGP17)","ARABINOGALACTAN PROTEIN 17 (AGP17)"]
["AT2G23600","Chr2:10042198-10043673","cs","ls","OK",111.422,29.5531,-1.91465,5.742,{"v":9.36e-09,"d":"9.36E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0005737 GO:0009696 GO:0080032 GO:0080031 GO:0080030","AT2G23600.1","Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES2 appears to be involved in MeSA hydrolysis in planta. This protein does not act on MeGA4, or MEGA9 in vitro.","protein_coding","ACETONE-CYANOHYDRIN LYASE (ACL)","ACETONE-CYANOHYDRIN LYASE (ACL)"]
["AT2G23770","Chr2:10120241-10122080","cs","ls","OK",4.83327,0.953128,-2.34226,3.58607,0.000335699,0.0137119,"yes","GO:0071323 GO:0045087 GO:0016301 GO:0008061 GO:0071219 GO:0005886 GO:0009507","AT2G23770.1","protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Immunoglobulin-like (InterPro:IPR007110), Protein kinase, catalytic domain (InterPro:IPR000719), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G33580.1); Has 93408 Blast hits to 92552 proteins in 3130 species: Archae - 75; Bacteria - 9623; Metazoa - 34895; Fungi - 6839; Plants - 28747; Viruses - 328; Other Eukaryotes - 12901 (source: NCBI BLink).","protein_coding","LYSM-CONTAINING RECEPTOR-LIKE KINASE 4 (LYK4)","LYSM-CONTAINING RECEPTOR-LIKE KINASE 4 (LYK4)"]
["AT2G24550","Chr2:10427855-10429222","cs","ls","OK",50.6909,18.4548,-1.45773,4.08986,{"v":4.32e-05,"d":"4.32E-05"},0.0026446,"yes","GO:0005634 GO:0006612 GO:0003674 GO:0009963 GO:0010363","AT2G24550.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).","protein_coding"]
["AT2G24600","Chr2:10452115-10454524","cs","ls","OK",8.63002,0.544014,-3.98765,5.23117,{"v":1.68e-07,"d":"1.68E-07"},{"v":2.42e-05,"d":"2.42E-05"},"yes","GO:0005575 GO:0008150","AT2G24600.3","Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G10340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G25450","Chr2:10829915-10831655","cs","ls","OK",151.212,0.452543,-8.3843,10.9487,0,0,"yes","GO:0005737 GO:0016706 GO:0009815 GO:0010439 GO:0009506 GO:0055114","AT2G25450.1","encodes a protein whose sequence is similar to ACC oxidase","protein_coding"]
["AT2G25735","Chr2:10975059-10975759","cs","ls","OK",20.5353,2.4734,-3.05354,4.59268,{"v":4.38e-06,"d":"4.38E-06"},0.000415635,"yes","GO:0010200 GO:0030968 GO:0009611 GO:0005739 GO:0050832 GO:0002679 GO:0003674 GO:0005886 GO:0002237 GO:0006979","AT2G25735.1","unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT2G26190","Chr2:11147638-11150510","cs","ls","OK",33.2989,16.0386,-1.05393,3.15606,0.00159915,0.0449643,"yes","GO:0005516 GO:0006499","AT2G26190.1","calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT4G33050.3); Has 368 Blast hits to 279 proteins in 59 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 105; Plants - 232; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).","protein_coding"]
["AT2G26470","Chr2:11259152-11262494","cs","ls","OK",7.83818,1.21757,-2.68651,4.2152,{"v":2.5e-05,"d":"2.50E-05"},0.00167929,"yes","GO:0008150 GO:0005634 GO:0003674","AT2G26470.1","unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink).","protein_coding"]
["AT2G26530","Chr2:11282774-11284229","cs","ls","OK",31.6493,10.9554,-1.53054,4.08743,{"v":4.36e-05,"d":"4.36E-05"},0.00265858,"yes","GO:0010363 GO:0009863 GO:0006612 GO:0009867 GO:0009611 GO:0009612 GO:0003674 GO:0005886 GO:0009646 GO:0009507 GO:0010200","AT2G26530.1","unknown function","protein_coding","(AR781)","(AR781)"]
["AT2G27402","Chr2:11723524-11724362","cs","ls","OK",19.2457,0.484509,-5.31187,6.22886,{"v":4.7e-10,"d":"4.70E-10"},{"v":1.48e-07,"d":"1.48E-07"},"yes","GO:0005575 GO:0003674 GO:0008150","AT2G27402.1","BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 18 (TAIR:AT2G32180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G28190","Chr2:12014497-12016569","cs","ls","OK",135.967,40.2262,-1.75704,5.37264,{"v":7.76e-08,"d":"7.76E-08"},{"v":1.27e-05,"d":"1.27E-05"},"yes","GO:0009579 GO:0071329 GO:0035195 GO:0009407 GO:0071493 GO:0046688 GO:0071472 GO:0009570 GO:0071484 GO:0048046 GO:0019430 GO:0008270 GO:0071457 GO:0010039 GO:0004784 GO:0005507","AT2G28190.1","Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage. Activation depends totally on CCS.","protein_coding","COPPER/ZINC SUPEROXIDE DISMUTASE 2 (CSD2)","COPPER/ZINC SUPEROXIDE DISMUTASE 2 (CZSOD2)"]
["AT2G28210","Chr2:12029996-12032420","cs","ls","OK",33.2548,6.52183,-2.35021,4.39237,{"v":1.12e-05,"d":"1.12E-05"},0.000876279,"yes","GO:0005737 GO:0006730 GO:0016020 GO:0009723 GO:0008270 GO:0010037 GO:0004089","AT2G28210.1","alpha carbonic anhydrase 2 (ACA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: response to carbon dioxide, one-carbon metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, alpha-class, catalytic domain (InterPro:IPR001148), Carbonic anhydrase, alpha-class, conserved site (InterPro:IPR018338), Carbonic anhydrase, CAH1-like (InterPro:IPR018340); BEST Arabidopsis thaliana protein match is: alpha carbonic anhydrase 7 (TAIR:AT1G08080.1); Has 3295 Blast hits to 3278 proteins in 530 species: Archae - 0; Bacteria - 691; Metazoa - 2036; Fungi - 83; Plants - 323; Viruses - 2; Other Eukaryotes - 160 (source: NCBI BLink).","protein_coding","ALPHA CARBONIC ANHYDRASE 2 (ACA2)","ALPHA CARBONIC ANHYDRASE 2 (ACA2)"]
["AT2G29170","Chr2:12541863-12542282","cs","ls","OK",19.6791,1.49806,-3.7155,3.35033,0.000807166,0.0273431,"yes","GO:0016491 GO:0005576 GO:0008152 GO:0000166","AT2G29170.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G29670","Chr2:12681957-12685087","cs","ls","OK",95.6051,39.5823,-1.27223,4.25755,{"v":2.07e-05,"d":"2.07E-05"},0.00146191,"yes","GO:0009507","AT2G29670.1","Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 535 Blast hits to 340 proteins in 62 species: Archae - 10; Bacteria - 119; Metazoa - 2; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).","protein_coding"]
["AT2G30210","Chr2:12887445-12889874","cs","ls","OK",0.744749,0.0234109,-4.9915,3.30552,0.000947996,0.0303527,"yes","GO:0048046 GO:0005507 GO:0046274 GO:0055114 GO:0016491","AT2G30210.1","putative laccase, a member of laccase family of genes (17 members in Arabidopsis).","protein_coding","LACCASE 3 (LAC3)","LACCASE 3 (LAC3)"]
["AT2G30520","Chr2:13002741-13005600","cs","ls","OK",75.4674,38.4876,-0.971461,3.13801,0.00170097,0.0467671,"yes","GO:0005737 GO:0007030 GO:0009954 GO:0005634 GO:0006816 GO:0009638 GO:0019344 GO:0004871 GO:0005886 GO:0010227 GO:0009651 GO:0048439","AT2G30520.1","light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis","protein_coding","ROOT PHOTOTROPISM 2 (RPT2)","ROOT PHOTOTROPISM 2 (RPT2)"]
["AT2G30766","Chr2:13105769-13108863","cs","ls","OK",88.1752,11.0469,-2.99674,5.28529,{"v":1.26e-07,"d":"1.26E-07"},{"v":1.96e-05,"d":"1.96E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT2G30766.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT2G30790","Chr2:13118936-13120090","cs","ls","OK",10.2034,2.18135,-2.22575,3.18755,0.00143483,0.0412703,"yes","GO:0010207 GO:0009570 GO:0019898 GO:0005509 GO:0030095 GO:0009654 GO:0009543","AT2G30790.1","Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.","protein_coding","PHOTOSYSTEM II SUBUNIT P-2 (PSBP-2)","PHOTOSYSTEM II SUBUNIT P-2 (PSBP-2)"]
["AT2G32030","Chr2:13632467-13633335","cs","ls","OK",2.57456,0.135901,-4.2437,3.37053,0.000750224,0.0256771,"yes","GO:0005737 GO:0009738 GO:0010200 GO:0008080 GO:0009693 GO:0050832 GO:0002679 GO:0009873","AT2G32030.1","Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT2G32020.1); Has 9856 Blast hits to 9837 proteins in 1766 species: Archae - 84; Bacteria - 9082; Metazoa - 1; Fungi - 109; Plants - 131; Viruses - 3; Other Eukaryotes - 446 (source: NCBI BLink).","protein_coding"]
["AT2G33850","Chr2:14321061-14322049","cs","ls","OK",89.5122,29.6554,-1.59379,4.65671,{"v":3.21e-06,"d":"3.21E-06"},0.000317325,"yes","GO:0003674 GO:0005576 GO:0008150","AT2G33850.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink).","protein_coding"]
["AT2G34010","Chr2:14368855-14370438","cs","ls","OK",1.92147,0.0715545,-4.74702,3.84719,0.000119479,0.00620884,"yes","GO:0048366 GO:0005634 GO:0045892 GO:0005515","AT2G34010.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29010.1); Has 32 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).","protein_coding"]
["AT2G36120","Chr2:15165436-15166465","cs","ls","OK",74.3876,32.7391,-1.18405,3.14224,0.00167658,0.0463535,"yes","GO:0010087 GO:0010305 GO:0010588 GO:0048366","AT2G36120.1","Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects.","protein_coding","DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1)","DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1)"]
["AT2G37110","Chr2:15592551-15594014","cs","ls","OK",58.1395,27.711,-1.06906,3.12759,0.00176243,0.047926,"yes","GO:0005737 GO:0006865 GO:0003674 GO:0010200 GO:0006499","AT2G37110.1","PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT2G40935.1); Has 380 Blast hits to 379 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 19; Plants - 350; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT2G37430","Chr2:15706356-15707224","cs","ls","OK",1.65569,0.0607547,-4.76829,3.15002,0.00163259,0.0455169,"yes","GO:0010200 GO:0003700 GO:0005634 GO:0006355 GO:0002679 GO:0008270 GO:0009693","AT2G37430.1","C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: cotyledon, root, petiole; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G53600.1); Has 5065 Blast hits to 4182 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 4138; Fungi - 12; Plants - 806; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).","protein_coding"]
["AT2G38380","Chr2:16076383-16078583","cs","ls","OK",9.15587,2.54074,-1.84945,3.27199,0.00106793,0.0331898,"yes","GO:0020037 GO:0006979 GO:0005576 GO:0010043 GO:0009651 GO:0009505 GO:0055114 GO:0004601","AT2G38380.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to zinc ion, response to salt stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38390.1); Has 4386 Blast hits to 4361 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 86; Plants - 4250; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","protein_coding"]
["AT2G38390","Chr2:16079680-16081509","cs","ls","OK",5.47318,0.873033,-2.64827,3.47723,0.000506631,0.0186243,"yes","GO:0020037 GO:0004601 GO:0005576 GO:0009651 GO:0006979 GO:0055114","AT2G38390.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38380.1); Has 4338 Blast hits to 4309 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 52; Plants - 4237; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).","protein_coding"]
["AT2G38470","Chr2:16108360-16111797","cs","ls","OK",21.1751,4.62103,-2.19608,4.96135,{"v":7e-07,"d":"7.00E-07"},{"v":8.31e-05,"d":"8.31E-05"},"yes","GO:0009595 GO:0000165 GO:0006612 GO:0010120 GO:0031348 GO:0009697 GO:0042742 GO:0009414 GO:0009651 GO:0010310 GO:0009862 GO:0005634 GO:0009867 GO:0010508 GO:0043069 GO:0050832 GO:0043900 GO:0009409 GO:0010200 GO:0010363 GO:0003700 GO:0002679 GO:0006355 GO","AT2G38470.1","Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.","protein_coding","WRKY DNA-BINDING PROTEIN 33 (WRKY33)","WRKY DNA-BINDING PROTEIN 33 (ATWRKY33)"]
["AT2G38995","Chr2:16282119-16284868","cs","ls","OK",3.48225,0.585243,-2.57291,3.1872,0.00143659,0.0412703,"yes","GO:0005634 GO:0004144","AT2G38995.1","O-acyltransferase (WSD1-like) family protein; CONTAINS InterPro DOMAIN/s: O-acyltransferase, WSD1, C-terminal (InterPro:IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: O-acyltransferase (WSD1-like) family protein (TAIR:AT5G37300.1); Has 952 Blast hits to 940 proteins in 139 species: Archae - 2; Bacteria - 706; Metazoa - 10; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).","protein_coding"]
["AT2G39400","Chr2:16452611-16454801","cs","ls","OK",15.8176,4.05376,-1.96419,3.73734,0.00018598,0.00887473,"yes","GO:0005737 GO:0016787","AT2G39400.1","alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G55180.1); Has 4815 Blast hits to 4811 proteins in 1490 species: Archae - 34; Bacteria - 3394; Metazoa - 137; Fungi - 136; Plants - 554; Viruses - 35; Other Eukaryotes - 525 (source: NCBI BLink).","protein_coding"]
["AT2G40000","Chr2:16700509-16702028","cs","ls","OK",39.9168,14.0073,-1.51081,4.33781,{"v":1.44e-05,"d":"1.44E-05"},0.00108608,"yes","GO:0009751 GO:0010200 GO:0009816 GO:0005739 GO:0005515 GO:0009646 GO:0006979","AT2G40000.1","ortholog of sugar beet HS1 PRO-1 2 (HSPRO2); CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: Hs1pro-1 protein (TAIR:AT3G55840.1); Has 71 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).","protein_coding","ORTHOLOG OF SUGAR BEET HS1 PRO-1 2 (HSPRO2)","ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2 (ATHSPRO2)"]
["AT2G40750","Chr2:17000453-17002468","cs","ls","OK",6.99629,0.853617,-3.03493,4.18373,{"v":2.87e-05,"d":"2.87E-05"},0.00187258,"yes","GO:0043565 GO:0009595 GO:0010310 GO:0010363 GO:0006355 GO:0050832 GO:0009862 GO:0005634 GO:0006612 GO:0000165 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0042742 GO:0005515 GO:0003700 GO:0010200","AT2G40750.1","member of WRKY Transcription Factor; Group III","protein_coding","WRKY DNA-BINDING PROTEIN 54 (WRKY54)","WRKY DNA-BINDING PROTEIN 54 (WRKY54)"]
["AT2G40920","Chr2:17072463-17074164","cs","ls","OK",24.4397,2.14078,-3.51302,6.44634,{"v":1.15e-10,"d":"1.15E-10"},{"v":4.64e-08,"d":"4.64E-08"},"yes","GO:0008150 GO:0005634 GO:0003674","AT2G40920.1","F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated domain, type 3 (InterPro:IPR013187), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G40910.1); Has 1328 Blast hits to 1276 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1327; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT2G41090","Chr2:17135720-17136852","cs","ls","OK",224.551,81.4104,-1.46376,4.80578,{"v":1.54e-06,"d":"1.54E-06"},0.000162923,"yes","GO:0005886 GO:0005509 GO:0009612 GO:0019722","AT2G41090.1","Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 24843 Blast hits to 18222 proteins in 1715 species: Archae - 1; Bacteria - 127; Metazoa - 10608; Fungi - 5338; Plants - 5376; Viruses - 2; Other Eukaryotes - 3391 (source: NCBI BLink).","protein_coding"]
["AT2G41100","Chr2:17137828-17139612","cs","ls","OK",79.5605,11.3053,-2.81505,6.89405,{"v":5.42e-12,"d":"5.42E-12"},{"v":3.71e-09,"d":"3.71E-09"},"yes","GO:0010363 GO:0019722 GO:0006612 GO:0009611 GO:0005739 GO:0005774 GO:0010200 GO:0006944 GO:0005515 GO:0009266 GO:0009646 GO:0009652 GO:0043069 GO:0009506 GO:0005509","AT2G41100.1","encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.","protein_coding","TOUCH 3 (TCH3)","TOUCH 3 (TCH3)"]
["AT2G41250","Chr2:17200658-17202618","cs","ls","OK",39.5742,11.1437,-1.82834,4.52628,{"v":6e-06,"d":"6.00E-06"},0.000539217,"yes","GO:0048573 GO:0046685 GO:0008152 GO:0008967","AT2G41250.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), HAD-superfamily hydrolase, subfamily IA, REG-2-like (InterPro:IPR011949), HAD-superfamily hydrolase, subfamily IA, variant 1 (InterPro:IPR006439); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G14310.1); Has 5345 Blast hits to 5345 proteins in 1611 species: Archae - 258; Bacteria - 4323; Metazoa - 249; Fungi - 67; Plants - 142; Viruses - 0; Other Eukaryotes - 306 (source: NCBI BLink).","protein_coding"]
["AT2G42170","Chr2:17577713-17580392","cs","ls","OK",9.90701,0.855878,-3.53297,4.79969,{"v":1.59e-06,"d":"1.59E-06"},0.000166904,"yes","GO:0005737 GO:0005200 GO:0008150 GO:0015629 GO:0005524","AT2G42170.1","Actin family protein; FUNCTIONS IN: structural constituent of cytoskeleton, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: actin cytoskeleton; EXPRESSED IN: vascular bundle; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1); Has 13233 Blast hits to 12851 proteins in 2620 species: Archae - 6; Bacteria - 13; Metazoa - 5650; Fungi - 3392; Plants - 1602; Viruses - 2; Other Eukaryotes - 2568 (source: NCBI BLink).","protein_coding"]
["AT2G45830","Chr2:18866060-18868542","cs","ls","OK",1.07469,0.046586,-4.52788,3.19311,0.00140749,0.0406697,"yes","GO:0008150 GO:0005634 GO:0005576 GO:0003674","AT2G45830.1","downstream target of AGL15 2 (DTA2); CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding","DOWNSTREAM TARGET OF AGL15 2 (DTA2)","DOWNSTREAM TARGET OF AGL15 2 (DTA2)"]
["AT2G45920","Chr2:18899083-18901303","cs","ls","OK",3.58387,0.41579,-3.10759,3.7164,0.000202084,0.00926458,"yes","GO:0016567 GO:0005634 GO:0004842 GO:0000151","AT2G45920.1","U-box domain-containing protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G61390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT2G46400","Chr2:19043413-19044826","cs","ls","OK",12.8923,3.37692,-1.93273,3.62171,0.000292658,0.012244,"yes","GO:0043565 GO:0010200 GO:0005730 GO:0003700 GO:0009627 GO:0006355 GO:0009697","AT2G46400.1","member of WRKY Transcription Factor; Group III","protein_coding","WRKY DNA-BINDING PROTEIN 46 (WRKY46)","WRKY DNA-BINDING PROTEIN 46 (WRKY46)"]
["AT2G46440","Chr2:19061860-19064881","cs","ls","OK",7.23488,1.21626,-2.57252,4.44532,{"v":8.78e-06,"d":"8.78E-06"},0.000728921,"yes","GO:0030551 GO:0005261 GO:0009620 GO:0006811 GO:0005516 GO:0005886 GO:0055085","AT2G46440.1","Member of Cyclic nucleotide gated channel family. Positive regulator of resistance against avirulent fungal pathogen.","protein_coding","CYCLIC NUCLEOTIDE-GATED CHANNELS (CNGC11)","CYCLIC NUCLEOTIDE-GATED CHANNELS (ATCNGC11)"]
["AT2G46450","Chr2:19065715-19069569","cs","ls","OK",10.6862,3.53585,-1.59563,3.30885,0.000936791,0.0301398,"yes","GO:0030551 GO:0005261 GO:0009620 GO:0006811 GO:0005886 GO:0055085","AT2G46450.1","Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner.","protein_coding","CYCLIC NUCLEOTIDE-GATED CHANNEL 12 (CNGC12)","CYCLIC NUCLEOTIDE-GATED CHANNEL 12 (CNGC12)"]
["AT3G01290","Chr3:88053-89422","cs","ls","OK",40.4159,15.3715,-1.39466,3.6926,0.000221973,0.0100145,"yes","GO:0010167 GO:0070838 GO:0010363 GO:0030968 GO:0006499 GO:0006612 GO:0005739 GO:0005774 GO:0050832 GO:0006944 GO:0030003 GO:0043069 GO:0009506 GO:0015706","AT3G01290.1","SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: mitochondrion, plasma membrane, vacuole, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 7523 Blast hits to 7522 proteins in 1968 species: Archae - 210; Bacteria - 4831; Metazoa - 573; Fungi - 279; Plants - 280; Viruses - 3; Other Eukaryotes - 1347 (source: NCBI BLink).","protein_coding","HYPERSENSITIVE INDUCED REACTION 2 (HIR2)","(AtHIR2)"]
["AT3G02380","Chr3:487235-488693","cs","ls","OK",13.0887,4.06094,-1.68844,3.32835,0.000873615,0.0287597,"yes","GO:0009658 GO:0003700 GO:0005634 GO:0008270 GO:0009909","AT3G02380.1","homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins","protein_coding","CONSTANS-LIKE 2 (COL2)","CONSTANS-LIKE 2 (ATCOL2)"]
["AT3G03520","Chr3:837876-840624","cs","ls","OK",5.82425,1.5408,-1.9184,3.14761,0.00164613,0.0457025,"yes","GO:0005773 GO:0016036 GO:0006796 GO:0009506 GO:0016788","AT3G03520.1","Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses. Role in lipid synthesis.","protein_coding","NON-SPECIFIC PHOSPHOLIPASE C3 (NPC3)","NON-SPECIFIC PHOSPHOLIPASE C3 (NPC3)"]
["AT3G04210","Chr3:1105962-1108069","cs","ls","OK",77.9489,6.95484,-3.48644,9.69705,0,0,"yes","GO:0005737 GO:0043531 GO:0031347 GO:0009627 GO:0007165","AT3G04210.1","Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 7287 Blast hits to 7131 proteins in 234 species: Archae - 2; Bacteria - 61; Metazoa - 8; Fungi - 0; Plants - 7211; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).","protein_coding"]
["AT3G07215","Chr3:2296035-2297789","cs","ls","OK",5.10924,0.451132,-3.50149,3.98618,{"v":6.71e-05,"d":"6.71E-05"},0.00392032,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G07215.1","Unknown gene","other_rna"]
["AT3G09920","Chr3:3038779-3044919","cs","ls","OK",10.058,4.08236,-1.30087,3.17463,0.0015003,0.0427907,"yes","GO:0016308 GO:0006520 GO:0005975 GO:0005634 GO:0016020 GO:0046488 GO:0005515 GO:0005829 GO:0005524","AT3G09920.1","phosphatidyl inositol monophosphate 5 kinase (PIP5K9); FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process, cellular amino acid metabolic process; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G60890.1); Has 25974 Blast hits to 7709 proteins in 605 species: Archae - 0; Bacteria - 3692; Metazoa - 3999; Fungi - 475; Plants - 1866; Viruses - 0; Other Eukaryotes - 15942 (source: NCBI BLink).","protein_coding","PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE (PIP5K9)","PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE (PIP5K9)"]
["AT3G10200","Chr3:3157607-3160188","cs","ls","OK",2.32166,0.258366,-3.16767,3.4784,0.000504415,0.0186243,"yes","GO:0005794 GO:0008168","AT3G10200.1","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G04060.1); Has 1192 Blast hits to 1180 proteins in 187 species: Archae - 1; Bacteria - 301; Metazoa - 2; Fungi - 2; Plants - 876; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).","protein_coding"]
["AT3G11010","Chr3:3447567-3453683","cs","ls","OK",2.44905,0.0853982,-4.84187,3.81974,0.000133594,0.00666326,"yes","GO:0005575 GO:0006952 GO:0016301 GO:0007165","AT3G11010.1","receptor like protein 34 (RLP34); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 53 (TAIR:AT5G27060.1); Has 142392 Blast hits to 33789 proteins in 1239 species: Archae - 73; Bacteria - 11207; Metazoa - 34063; Fungi - 1634; Plants - 83633; Viruses - 34; Other Eukaryotes - 11748 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 34 (RLP34)","RECEPTOR LIKE PROTEIN 34 (RLP34)"]
["AT3G14210","Chr3:4729822-4731803","cs","ls","OK",297.839,52.6512,-2.49999,8.32165,0,0,"yes","GO:0009941 GO:0048046 GO:0022626 GO:0005773 GO:0009625 GO:0005634 GO:0019762 GO:0005777 GO:0004091 GO:0019761 GO:0019288 GO:0006098 GO:0042742 GO:0009409 GO:0015979 GO:0009506 GO:0019252","AT3G14210.1","A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni.","protein_coding","EPITHIOSPECIFIER MODIFIER 1 (ESM1)","EPITHIOSPECIFIER MODIFIER 1 (ESM1)"]
["AT3G14650","Chr3:4922130-4924694","cs","ls","OK",48.9521,13.3159,-1.87822,5.72799,{"v":1.02e-08,"d":"1.02E-08"},{"v":2.2e-06,"d":"2.20E-06"},"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G14650.1","putative cytochrome P450","protein_coding","\"CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 11\" (CYP72A11)","\"CYTOCHROME P450, FAMILY 72, SUBFAMILY A, POLYPEPTIDE 11\" (CYP72A11)"]
["AT3G15950","Chr3:5397568-5402652","cs","ls","OK",63.3281,17.8645,-1.82575,5.74272,{"v":9.32e-09,"d":"9.32E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0080119 GO:0010168 GO:0005777 GO:0005576 GO:0009651 GO:0009506","AT3G15950.1","Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.","protein_coding","(NAI2)","(NAI2)"]
["AT3G16420","Chr3:5579385-5580953","cs","ls","OK",109.007,42.6456,-1.35395,4.20971,{"v":2.56e-05,"d":"2.56E-05"},0.00170908,"yes","GO:0051336 GO:0006457 GO:0005829 GO:0005634 GO:0005576 GO:0005515 GO:0005507 GO:0030234 GO:0009506","AT3G16420.1","The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.","protein_coding","PYK10-BINDING PROTEIN 1 (PBP1)","JACALIN-RELATED LECTIN 30 (JAL30)"]
["AT3G16520","Chr3:5618439-5620873","cs","ls","OK",105.93,31.032,-1.77128,5.73464,{"v":9.77e-09,"d":"9.77E-09"},{"v":2.16e-06,"d":"2.16E-06"},"yes","GO:0080044 GO:0005634 GO:0080043 GO:0080046 GO:0008152 GO:0080045 GO:0005829","AT3G16520.3","UDP-glucosyl transferase 88A1 (UGT88A1); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 72B3 (TAIR:AT1G01420.1); Has 7523 Blast hits to 7470 proteins in 455 species: Archae - 0; Bacteria - 255; Metazoa - 2062; Fungi - 26; Plants - 5000; Viruses - 120; Other Eukaryotes - 60 (source: NCBI BLink).","protein_coding","UDP-GLUCOSYL TRANSFERASE 88A1 (UGT88A1)","UDP-GLUCOSYL TRANSFERASE 88A1 (UGT88A1)"]
["AT3G16670","Chr3:5681418-5682331","cs","ls","OK",55.8963,12.6586,-2.14263,5.03245,{"v":4.84e-07,"d":"4.84E-07"},{"v":6.12e-05,"d":"6.12E-05"},"yes","GO:0005576 GO:0003674 GO:0006979","AT3G16670.1","Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G16660.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT3G16770","Chr3:5705661-5707023","cs","ls","OK",35.9759,5.15584,-2.80275,5.72767,{"v":1.02e-08,"d":"1.02E-08"},{"v":2.2e-06,"d":"2.20E-06"},"yes","GO:0005737 GO:0005886 GO:0009735 GO:0009753 GO:0003700 GO:0005634 GO:0010286 GO:0045893 GO:0005515 GO:0009873 GO:0008219 GO:0051707","AT3G16770.1","Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.","protein_coding","ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN (EBP)","ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN (ATEBP)"]
["AT3G17510","Chr3:5988990-5992912","cs","ls","OK",29.8155,12.5078,-1.25324,3.4777,0.000505733,0.0186243,"yes","GO:0006468 GO:0009737 GO:0019722 GO:0004674 GO:0004713 GO:0005515 GO:0005886 GO:0009651 GO:0005524 GO:0010118","AT3G17510.1","Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.","protein_coding","CBL-INTERACTING PROTEIN KINASE 1 (CIPK1)","SNF1-RELATED PROTEIN KINASE 3.16 (SnRK3.16)"]
["AT3G18270","Chr3:6261904-6264309","cs","ls","OK",12.6859,2.9692,-2.09508,4.13978,{"v":3.48e-05,"d":"3.48E-05"},0.00219079,"yes","GO:0003824 GO:0008152 GO:0005739 GO:0009507","AT3G18270.1","a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model.","protein_coding","\"CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 5 PSEUDOGENE\" (CYP77A5P)","\"CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 5 PSEUDOGENE\" (CYP77A5P)"]
["AT3G18520","Chr3:6361175-6365615","cs","ls","OK",14.1978,5.76388,-1.30056,3.19494,0.0013986,0.0404719,"yes","GO:0048573 GO:0004407 GO:0005634 GO:0016575 GO:0008270 GO:0009294","AT3G18520.2","Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.","protein_coding","HISTONE DEACETYLASE 15 (HDA15)","(HDA15)"]
["AT3G19515","Chr3:6766667-6771169","cs","ls","OK",15.5993,2.46651,-2.66094,5.85271,{"v":4.84e-09,"d":"4.84E-09"},{"v":1.2e-06,"d":"1.20E-06"},"yes","GO:0000394 GO:0010050 GO:0009616 GO:0003674 GO:0009086 GO:0005634","AT3G19515.2","CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23935.1); Has 546 Blast hits to 394 proteins in 84 species: Archae - 0; Bacteria - 3; Metazoa - 210; Fungi - 15; Plants - 143; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).","protein_coding"]
["AT3G21805","Chr3:7682361-7682452","cs","ls","OK",11241.6,855.161,-3.7165,6.08011,{"v":1.2e-09,"d":"1.20E-09"},{"v":3.46e-07,"d":"3.46E-07"},"yes","GO:0000154 GO:0003674 GO:0005732","AT3G21805.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT3G22231","Chr3:7845822-7846605","cs","ls","OK",344.574,11.5078,-4.90413,9.5134,0,0,"yes","GO:0009620 GO:0005634 GO:0009617 GO:0003674 GO:0005886","AT3G22231.1","Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.","protein_coding","PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1)","PATHOGEN AND CIRCADIAN CONTROLLED 1 (PCC1)"]
["AT3G22235","Chr3:7854418-7855814","cs","ls","OK",389.817,4.43055,-6.45917,6.73828,{"v":1.6e-11,"d":"1.60E-11"},{"v":9.36e-09,"d":"9.36E-09"},"yes","GO:0008150 GO:0005634 GO:0003674","AT3G22235.1","BEST Arabidopsis thaliana protein match is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1); Has 122 Blast hits to 122 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G22240","Chr3:7863615-7864819","cs","ls","OK",163.728,0.943012,-7.4398,8.03827,{"v":8.88e-16,"d":"8.88E-16"},{"v":9.8e-13,"d":"9.80E-13"},"yes","GO:0008150 GO:0005634 GO:0003674","AT3G22240.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G23550","Chr3:8448272-8450697","cs","ls","OK",1.33483,0.118507,-3.49361,3.13065,0.00174418,0.0475599,"yes","GO:0006855 GO:0005886 GO:0009723 GO:0015297 GO:0015238","AT3G23550.1","MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G23560.1); Has 11241 Blast hits to 11165 proteins in 2062 species: Archae - 263; Bacteria - 7905; Metazoa - 148; Fungi - 330; Plants - 1322; Viruses - 0; Other Eukaryotes - 1273 (source: NCBI BLink).","protein_coding"]
["AT3G23590","Chr3:8467448-8473627","cs","ls","OK",6.91498,2.94976,-1.22913,3.1207,0.00180423,0.0488619,"yes","GO:0048765 GO:0045010 GO:0010090 GO:0071555 GO:0003674 GO:0007155 GO:0016592","AT3G23590.1","Encodes a protein shown to physically associate with the conserved transcriptional coregulatory complex, Mediator, and is involved in the regulation of phenylpropanoid homeostasis.","protein_coding","REF4-RELATED 1 (RFR1)","(MED33A)"]
["AT3G24515","Chr3:8934471-8936279","cs","ls","OK",9.07992,1.37255,-2.72582,4.09874,{"v":4.15e-05,"d":"4.15E-05"},0.00256889,"yes","GO:0004842","AT3G24515.1","ubiquitin-conjugating enzyme 37 (UBC37); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 11 (TAIR:AT3G08690.2); Has 10163 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4605; Fungi - 2137; Plants - 1818; Viruses - 27; Other Eukaryotes - 1574 (source: NCBI BLink).","protein_coding","UBIQUITIN-CONJUGATING ENZYME 37 (UBC37)","UBIQUITIN-CONJUGATING ENZYME 37 (UBC37)"]
["AT3G24982","Chr3:9105999-9108937","cs","ls","OK",1.21325,0.058172,-4.38241,4.07606,{"v":4.58e-05,"d":"4.58E-05"},0.00277219,"yes","GO:0007165 GO:0009507","AT3G24982.1","receptor like protein 40 (RLP40); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 42 (TAIR:AT3G25020.1); Has 99455 Blast hits to 28572 proteins in 1045 species: Archae - 41; Bacteria - 5981; Metazoa - 21246; Fungi - 1128; Plants - 63748; Viruses - 31; Other Eukaryotes - 7280 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 40 (RLP40)","RECEPTOR LIKE PROTEIN 40 (RLP40)"]
["AT3G25010","Chr3:9110102-9112748","cs","ls","OK",1.95218,0.271154,-2.8479,3.54502,0.000392584,0.0153712,"yes","GO:0016301 GO:0007165 GO:0009627 GO:0034976","AT3G25010.1","receptor like protein 41 (RLP41); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 100338 Blast hits to 28106 proteins in 1068 species: Archae - 55; Bacteria - 6779; Metazoa - 21043; Fungi - 1251; Plants - 63659; Viruses - 32; Other Eukaryotes - 7519 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 41 (RLP41)","RECEPTOR LIKE PROTEIN 41 (RLP41)"]
["AT3G25020","Chr3:9116867-9119540","cs","ls","OK",1.16128,0.0942719,-3.62275,3.58515,0.000336889,0.0137322,"yes","GO:0006952 GO:0005576 GO:0007165","AT3G25020.1","receptor like protein 42 (RLP42); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 40 (TAIR:AT3G24982.1); Has 101819 Blast hits to 28851 proteins in 1081 species: Archae - 42; Bacteria - 7146; Metazoa - 22681; Fungi - 1243; Plants - 63183; Viruses - 32; Other Eukaryotes - 7492 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 42 (RLP42)","RECEPTOR LIKE PROTEIN 42 (RLP42)"]
["AT3G25600","Chr3:9307253-9307967","cs","ls","OK",15.6455,3.71943,-2.07259,3.22971,0.00123914,0.0370455,"yes","GO:0005794 GO:0010200 GO:0005509","AT3G25600.1","Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G18530.1); Has 23107 Blast hits to 15210 proteins in 1505 species: Archae - 1; Bacteria - 136; Metazoa - 8522; Fungi - 5826; Plants - 5264; Viruses - 0; Other Eukaryotes - 3358 (source: NCBI BLink).","protein_coding"]
["AT3G26080","Chr3:9528773-9530496","cs","ls","OK",27.1643,10.4321,-1.38068,3.32241,0.000892437,0.0291858,"yes","GO:0009535 GO:0008150 GO:0005198","AT3G26080.1","plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 376 Blast hits to 374 proteins in 78 species: Archae - 0; Bacteria - 85; Metazoa - 0; Fungi - 0; Plants - 276; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).","protein_coding"]
["AT3G26220","Chr3:9596076-9597833","cs","ls","OK",2.59276,0.332963,-2.96106,3.21276,0.00131468,0.0387207,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G26220.1","cytochrome P450 monooxygenase","protein_coding","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 3\" (CYP71B3)","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 3\" (CYP71B3)"]
["AT3G26230","Chr3:9598004-9599959","cs","ls","OK",2.60019,0.0824583,-4.97881,4.43381,{"v":9.26e-06,"d":"9.26E-06"},0.000749631,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G26230.1","putative cytochrome P450","protein_coding","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 24\" (CYP71B24)","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 24\" (CYP71B24)"]
["AT3G26290","Chr3:9632681-9634470","cs","ls","OK",35.2588,12.398,-1.50787,4.27267,{"v":1.93e-05,"d":"1.93E-05"},0.00140837,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT3G26290.1","putative cytochrome P450","protein_coding","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 26\" (CYP71B26)","\"CYTOCHROME P450, FAMILY 71, SUBFAMILY B, POLYPEPTIDE 26\" (CYP71B26)"]
["AT3G26612","Chr3:9781982-9783412","cs","ls","OK",5.1251,0.16208,-4.9828,4.44928,{"v":8.62e-06,"d":"8.62E-06"},0.000718637,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G26612.1","Unknown gene","other_rna"]
["AT3G27610","Chr3:10225524-10228192","cs","ls","OK",6.61543,0.934624,-2.82338,3.64889,0.00026338,0.0115162,"yes","GO:0008150 GO:0003674 GO:0009507","AT3G27610.2","Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT2G01220.2).","protein_coding"]
["AT3G27990","Chr3:10392674-10398175","cs","ls","OK",5.56863,0.233748,-4.5743,5.03396,{"v":4.8e-07,"d":"4.80E-07"},{"v":6.11e-05,"d":"6.11E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT3G27990.1","Unknown gene","other_rna"]
["AT3G28200","Chr3:10518069-10519166","cs","ls","OK",56.6568,20.508,-1.46606,4.22664,{"v":2.37e-05,"d":"2.37E-05"},0.00160712,"yes","GO:0016126 GO:0020037 GO:0005829 GO:0004601 GO:0005576 GO:0005515 GO:0009505 GO:0006979 GO:0055114","AT3G28200.1","Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G40150.1); Has 4870 Blast hits to 4847 proteins in 335 species: Archae - 0; Bacteria - 4; Metazoa - 4; Fungi - 481; Plants - 4306; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).","protein_coding"]
["AT3G28340","Chr3:10588946-10590552","cs","ls","OK",5.30042,0.632679,-3.06656,4.25153,{"v":2.12e-05,"d":"2.12E-05"},0.00148832,"yes","GO:0005794 GO:0030968 GO:0009738 GO:0016051 GO:0047262 GO:0006979","AT3G28340.1","Encodes a protein with putative galacturonosyltransferase activity.","protein_coding","GALACTURONOSYLTRANSFERASE-LIKE 10 (GATL10)","GALACTINOL SYNTHASE 8 (GolS8)"]
["AT3G28950","Chr3:10976107-10977492","cs","ls","OK",29.1121,9.74107,-1.57947,3.69016,0.000224112,0.0100881,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G28950.1","AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT3G28940.1); Has 301 Blast hits to 301 proteins in 90 species: Archae - 4; Bacteria - 63; Metazoa - 0; Fungi - 82; Plants - 103; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).","protein_coding"]
["AT3G29375","Chr3:11280150-11281894","cs","ls","OK",37.6194,8.35285,-2.17114,5.14583,{"v":2.66e-07,"d":"2.66E-07"},{"v":3.67e-05,"d":"3.67E-05"},"yes","GO:0005737 GO:0008150 GO:0005634 GO:0003674","AT3G29375.1","XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G80790.1); Has 4410 Blast hits to 869 proteins in 187 species: Archae - 2; Bacteria - 84; Metazoa - 239; Fungi - 227; Plants - 231; Viruses - 48; Other Eukaryotes - 3579 (source: NCBI BLink).","protein_coding"]
["AT3G30775","Chr3:12448635-12451248","cs","ls","OK",19.2816,2.20953,-3.12541,6.18688,{"v":6.14e-10,"d":"6.14E-10"},{"v":1.85e-07,"d":"1.85E-07"},"yes","GO:0006562 GO:0004657 GO:0005739 GO:0006537 GO:0042742 GO:0009414 GO:0006979 GO:0055114","AT3G30775.1","Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element.","protein_coding","EARLY RESPONSIVE TO DEHYDRATION 5 (ERD5)","EARLY RESPONSIVE TO DEHYDRATION 5 (ERD5)"]
["AT3G43540","Chr3:15430688-15433187","cs","ls","OK",33.1605,15.2779,-1.11802,3.1344,0.00172204,0.0472613,"yes","GO:0008150 GO:0005576 GO:0003674 GO:0009507","AT3G43540.1","Protein of unknown function (DUF1350); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT5G47860.1); Has 426 Blast hits to 356 proteins in 87 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).","protein_coding"]
["AT3G44260","Chr3:15952044-15953084","cs","ls","OK",30.8416,11.5992,-1.41085,3.49558,0.00047303,0.017886,"yes","GO:0008408 GO:0004540 GO:0000289 GO:0010228 GO:0005634 GO:0009873 GO:0009611 GO:0009612 GO:0009451 GO:0042742 GO:0003676 GO:0009693 GO:0002213 GO:0010200","AT3G44260.1","Encodes one of the homologs of the yeast CCR4-associated factor 1: AT3G44260 (CAF1a), AT5G22250 (CAF1b). Has mRNA deadenylation activity. Also plays a role in plant defense responses.","protein_coding","CCR4- ASSOCIATED FACTOR 1A (CAF1a)","CCR4- ASSOCIATED FACTOR 1A (CAF1a)"]
["AT3G44450","Chr3:16074095-16074678","cs","ls","OK",116.888,27.5445,-2.08529,5.2394,{"v":1.61e-07,"d":"1.61E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0005634 GO:0003674","AT3G44450.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G44480","Chr3:16090563-16096359","cs","ls","OK",12.2321,3.45212,-1.82512,5.0225,{"v":5.1e-07,"d":"5.10E-07"},{"v":6.33e-05,"d":"6.33E-05"},"yes","GO:0009817 GO:0005886 GO:0006499 GO:0000139 GO:0007165 GO:0043531 GO:0030275 GO:0002239 GO:0005789","AT3G44480.1","Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 1 (RPP1)","(cog1)"]
["AT3G44630","Chr3:16195954-16201225","cs","ls","OK",7.66947,2.87096,-1.41759,3.71255,0.000205181,0.00938489,"yes","GO:0005737 GO:0017111 GO:0006499 GO:0006952 GO:0007165 GO:0043531","AT3G44630.3","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 41236 Blast hits to 23630 proteins in 841 species: Archae - 26; Bacteria - 2523; Metazoa - 3794; Fungi - 289; Plants - 32905; Viruses - 4; Other Eukaryotes - 1695 (source: NCBI BLink).","protein_coding"]
["AT3G44670","Chr3:16216944-16221617","cs","ls","OK",12.7069,4.99541,-1.34694,3.52266,0.000427237,0.0164362,"yes","GO:0005737 GO:0017111 GO:0006499 GO:0042742 GO:0043531 GO:0007165","AT3G44670.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to bacterium, N-terminal protein myristoylation, defense response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 43058 Blast hits to 25503 proteins in 934 species: Archae - 40; Bacteria - 3496; Metazoa - 4195; Fungi - 278; Plants - 32050; Viruses - 26; Other Eukaryotes - 2973 (source: NCBI BLink).","protein_coding"]
["AT3G44713","Chr3:16260204-16262484","cs","ls","OK",1.50817,0.0255287,-5.88453,4.00631,{"v":6.17e-05,"d":"6.17E-05"},0.00364374,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G44713.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14800.1); Has 69 Blast hits to 64 proteins in 24 species: Archae - 2; Bacteria - 10; Metazoa - 4; Fungi - 4; Plants - 36; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).","protein_coding"]
["AT3G44970","Chr3:16432442-16434848","cs","ls","OK",14.7453,5.23771,-1.49325,3.27046,0.00107373,0.0331898,"yes","GO:0004497 GO:0019825 GO:0020037 GO:0016705 GO:0055114 GO:0009055","AT3G44970.1","Cytochrome P450 superfamily protein; FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, shoot, cotyledon, hypocotyl, leaf; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 708, subfamily A, polypeptide 2 (TAIR:AT5G48000.5); Has 31585 Blast hits to 31508 proteins in 1695 species: Archae - 52; Bacteria - 6275; Metazoa - 10768; Fungi - 5445; Plants - 7650; Viruses - 6; Other Eukaryotes - 1389 (source: NCBI BLink).","protein_coding"]
["AT3G45430","Chr3:16660758-16662783","cs","ls","OK",1.54899,0.0480394,-5.01096,4.09687,{"v":4.19e-05,"d":"4.19E-05"},0.00258174,"yes","GO:0004674 GO:0006468 GO:0004713 GO:0005524 GO:0005886","AT3G45430.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G60300.2); Has 112094 Blast hits to 110783 proteins in 4027 species: Archae - 87; Bacteria - 13033; Metazoa - 40575; Fungi - 9357; Plants - 32839; Viruses - 371; Other Eukaryotes - 15832 (source: NCBI BLink).","protein_coding"]
["AT3G45730","Chr3:16789979-16790582","cs","ls","OK",10.8739,1.19663,-3.18383,3.48829,0.000486124,0.0181876,"yes","GO:0008150 GO:0003674 GO:0005739","AT3G45730.1","unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G46130","Chr3:16945363-16946461","cs","ls","OK",34.9149,9.84018,-1.82708,3.34326,0.000827988,0.0279056,"yes","GO:0003700 GO:0006355 GO:0005634 GO:0009751","AT3G46130.1","Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.","protein_coding","MYB DOMAIN PROTEIN 48 (MYB48)","MYB DOMAIN PROTEIN 111 (MYB111)"]
["AT3G46530","Chr3:17130366-17133338","cs","ls","OK",22.2106,2.34552,-3.24327,7.47698,{"v":7.59e-14,"d":"7.59E-14"},{"v":6.28e-11,"d":"6.28E-11"},"yes","GO:0005737 GO:0005634 GO:0009626 GO:0043531 GO:0005886 GO:0009814","AT3G46530.1","Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 13 (RPP13)","RECOGNITION OF PERONOSPORA PARASITICA 13 (RPP13)"]
["AT3G46600","Chr3:17157923-17159965","cs","ls","OK",33.9311,12.341,-1.45915,4.23205,{"v":2.32e-05,"d":"2.32E-05"},0.00157431,"yes","GO:0010200 GO:0006355 GO:0019538 GO:0005634 GO:0003700 GO:0002679 GO:0016671 GO:0055114","AT3G46600.1","GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G59450.1); Has 2508 Blast hits to 2402 proteins in 303 species: Archae - 0; Bacteria - 7; Metazoa - 2; Fungi - 0; Plants - 2499; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G47250","Chr3:17399876-17401731","cs","ls","OK",39.3185,11.5995,-1.76115,4.98987,{"v":6.04e-07,"d":"6.04E-07"},{"v":7.27e-05,"d":"7.27E-05"},"yes","GO:0008150 GO:0005886","AT3G47250.1","Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G47200.2); Has 1106 Blast hits to 1004 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G47340","Chr3:17437883-17441243","cs","ls","OK",1.53842,0.0656509,-4.55049,3.52513,0.000423282,0.0163474,"yes","GO:0005737 GO:0043617 GO:0009744 GO:0009750 GO:0006529 GO:0009749 GO:0009063 GO:0009646 GO:0004066","AT3G47340.1","encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.","protein_coding","GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1 (ASN1)","GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1 (ASN1)"]
["AT3G47348","Chr3:17445962-17446047","cs","ls","OK",14338.8,419.629,-5.09467,6.41105,{"v":1.45e-10,"d":"1.45E-10"},{"v":5.52e-08,"d":"5.52E-08"},"yes","GO:0000154 GO:0003674 GO:0005732","AT3G47348.1","snoRNA; snoRNA","small_nucleolar_rna"]
["AT3G49580","Chr3:18375268-18375784","cs","ls","OK",40.1534,7.95265,-2.33601,3.67587,0.000237041,0.0105268,"yes","GO:0008150 GO:0005634 GO:0003674","AT3G49580.1","RESPONSE TO LOW SULFUR 1 (LSU1); BEST Arabidopsis thaliana protein match is: response to low sulfur 3 (TAIR:AT3G49570.1); Has 73 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).","protein_coding","RESPONSE TO LOW SULFUR 1 (LSU1)","RESPONSE TO LOW SULFUR 1 (LSU1)"]
["AT3G49910","Chr3:18504255-18504967","cs","ls","OK",888.32,287.441,-1.62782,5.50719,{"v":3.65e-08,"d":"3.65E-08"},{"v":6.46e-06,"d":"6.46E-06"},"yes","GO:0005730 GO:0005886 GO:0005774 GO:0003735 GO:0009409 GO:0001510 GO:0022625 GO:0006412 GO:0009507","AT3G49910.1","Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G67510.1); Has 1113 Blast hits to 1113 proteins in 414 species: Archae - 314; Bacteria - 5; Metazoa - 375; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).","protein_coding"]
["AT3G50560","Chr3:18761087-18764016","cs","ls","OK",5.57344,0.702295,-2.98842,3.55037,0.000384687,0.0151216,"yes","GO:0005575 GO:0016491 GO:0008152 GO:0000166","AT3G50560.1","NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G10050.1); Has 28315 Blast hits to 28305 proteins in 2489 species: Archae - 298; Bacteria - 21162; Metazoa - 1441; Fungi - 797; Plants - 407; Viruses - 0; Other Eukaryotes - 4210 (source: NCBI BLink).","protein_coding"]
["AT3G50930","Chr3:18929525-18931839","cs","ls","OK",5.28992,1.52771,-1.79187,3.27735,0.00104785,0.0327574,"yes","GO:0052542 GO:0010200 GO:0009627 GO:0009611 GO:0005739 GO:0009697 GO:0009612 GO:0016887 GO:0005886 GO:0005524","AT3G50930.1","cytochrome BC1 synthesis (BCS1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G50940.1); Has 21434 Blast hits to 19763 proteins in 2733 species: Archae - 1352; Bacteria - 7111; Metazoa - 3538; Fungi - 2773; Plants - 2474; Viruses - 30; Other Eukaryotes - 4156 (source: NCBI BLink).","protein_coding","CYTOCHROME BC1 SYNTHESIS (BCS1)","CYTOCHROME BC1 SYNTHESIS (BCS1)"]
["AT3G51920","Chr3:19268042-19269479","cs","ls","OK",65.1789,25.3666,-1.36147,3.63379,0.000279289,0.0118565,"yes","GO:0070838 GO:0005515 GO:0019722 GO:0009627 GO:0005829 GO:0009737 GO:0009612 GO:0005513 GO:0009269 GO:0005509 GO:0030003 GO:0005886 GO:0009409 GO:0009651 GO:0005634 GO:0031347","AT3G51920.1","encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Mutations in this gene alter plant responses to abiotic stress and abscisic acid.","protein_coding","CALMODULIN 9 (CAM9)","CALMODULIN 9 (CAM9)"]
["AT3G52400","Chr3:19425633-19427141","cs","ls","OK",30.0335,9.14286,-1.71585,4.04836,{"v":5.16e-05,"d":"5.16E-05"},0.00311201,"yes","GO:0009595 GO:0000165 GO:0006612 GO:0006862 GO:0006820 GO:0009697 GO:0042742 GO:0009414 GO:0007154 GO:0005484 GO:0043269 GO:0009733 GO:0010310 GO:0006888 GO:0009862 GO:0009738 GO:0009867 GO:0009963 GO:0051245 GO:0015696 GO:0043069 GO:0050832 GO:0043900 GO","AT3G52400.1","syntaxin protein, involved in the negative regulation of defense pathways such as programmed cell death, salicylic acid signalling pathway, jasmonic acid signalling pathway","protein_coding","SYNTAXIN OF PLANTS 122 (SYP122)","SYNTAXIN OF PLANTS 122 (SYP122)"]
["AT3G53730","Chr3:19912493-19913033","cs","ls","OK",499.901,261.757,-0.933412,3.1167,0.00182886,0.0491935,"yes","GO:0005634 GO:0003677 GO:0006334 GO:0000786","AT3G53730.1","Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink).","protein_coding"]
["AT3G55170","Chr3:20452909-20454342","cs","ls","OK",54.1921,14.1486,-1.93742,3.87593,0.000106218,0.00562273,"yes","GO:0003735 GO:0006412 GO:0042254 GO:0022625","AT3G55170.1","Ribosomal L29 family protein ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29 (InterPro:IPR001854), Ribosomal protein L29, conserved site (InterPro:IPR018254); BEST Arabidopsis thaliana protein match is: Ribosomal L29 family protein (TAIR:AT3G09500.1); Has 1329 Blast hits to 1329 proteins in 532 species: Archae - 155; Bacteria - 387; Metazoa - 302; Fungi - 146; Plants - 143; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).","protein_coding"]
["AT3G56360","Chr3:20896480-20897593","cs","ls","OK",138.675,58.8174,-1.2374,3.99454,{"v":6.48e-05,"d":"6.48E-05"},0.00380688,"yes","GO:0008150 GO:0009536 GO:0003674","AT3G56360.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT3G56400","Chr3:20908927-20910481","cs","ls","OK",56.687,9.45757,-2.58348,6.3364,{"v":2.35e-10,"d":"2.35E-10"},{"v":8.34e-08,"d":"8.34E-08"},"yes","GO:0009595 GO:0009759 GO:0006612 GO:0010120 GO:0031348 GO:0009697 GO:0006944 GO:0001666 GO:0043565 GO:0010310 GO:0009862 GO:0005634 GO:0000165 GO:0009864 GO:0043069 GO:0050832 GO:0002679 GO:0045892 GO:0009409 GO:0035304 GO:0010200 GO:0010363 GO:0003700 GO","AT3G56400.1","member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.","protein_coding","WRKY DNA-BINDING PROTEIN 70 (WRKY70)","WRKY DNA-BINDING PROTEIN 70 (WRKY70)"]
["AT3G56710","Chr3:21006749-21007565","cs","ls","OK",23.0175,6.66121,-1.78888,3.56792,0.000359819,0.0143579,"yes","GO:0010310 GO:0071482 GO:0045088 GO:0009816 GO:0009862 GO:0005634 GO:0000165 GO:0050832 GO:0031348 GO:0009697 GO:0005515 GO:0006995 GO:0009507","AT3G56710.1","Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.","protein_coding","SIGMA FACTOR BINDING PROTEIN 1 (SIB1)","SIGMA FACTOR BINDING PROTEIN 1 (SIB1)"]
["AT3G57640","Chr3:21344799-21346057","cs","ls","OK",2.55764,0.151681,-4.0757,3.74412,0.000181028,0.00865923,"yes","GO:0006468 GO:0005524 GO:0004672","AT3G57640.1","Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G65250.1); Has 19152 Blast hits to 18939 proteins in 410 species: Archae - 0; Bacteria - 70; Metazoa - 1065; Fungi - 99; Plants - 17549; Viruses - 14; Other Eukaryotes - 355 (source: NCBI BLink).","protein_coding"]
["AT3G59765","Chr3:22076460-22078339","cs","ls","OK",16.4554,2.96622,-2.47187,3.42945,0.000604815,0.0216718,"yes","GO:0005575 GO:0003674 GO:0008150","AT3G59765.1","Unknown gene","other_rna"]
["AT3G60150","Chr3:22222104-22223512","cs","ls","OK",4.69968,0.221363,-4.40808,3.83884,0.000123615,0.00628471,"yes","GO:0008150 GO:0003674 GO:0005739","AT3G60150.1","Protein of unknown function (DUF498/DUF598); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF498/DUF598) (TAIR:AT2G44525.1); Has 753 Blast hits to 753 proteins in 341 species: Archae - 0; Bacteria - 405; Metazoa - 118; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).","protein_coding"]
["AT3G60960","Chr3:22535705-22538635","cs","ls","OK",7.6483,0.398553,-4.2623,5.03465,{"v":4.79e-07,"d":"4.79E-07"},{"v":6.11e-05,"d":"6.11E-05"},"yes","GO:0008150 GO:0005739","AT3G60960.1","Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G28380.1); Has 6360 Blast hits to 3266 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 6335; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).","protein_coding"]
["AT4G01130","Chr4:485832-488007","cs","ls","OK",11.8119,2.65971,-2.15091,3.71085,0.000206568,0.00942664,"yes","GO:0004091 GO:0005576 GO:0006629","AT4G01130.1","GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1); Has 3308 Blast hits to 3260 proteins in 151 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 52; Plants - 3122; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT4G01590","Chr4:688812-690434","cs","ls","OK",39.8759,13.2996,-1.58413,3.5509,0.000383921,0.0151215,"yes","GO:0008150 GO:0005634 GO:0003674","AT4G01590.1","unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345 proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa - 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes - 773 (source: NCBI BLink).","protein_coding"]
["AT4G01750","Chr4:756362-758590","cs","ls","OK",1.66992,0.0902964,-4.20897,3.63475,0.000278254,0.0118565,"yes","GO:0005794 GO:0035252 GO:0010306 GO:0005783 GO:0009507","AT4G01750.1","Encodes a protein with UDP-xylose-dependent xylosyltransferase activity, which transfers Xyl onto L-fucose and (albeit less efficiently) L-arabinose. The linkage to L-fucose was shown to be preferentially to the O-4 position. Analysis of mutant containing T-DNA insertion in this gene indicate that the RGXT2 protein might be involved in the synthesis of the α-D-Xyl-(1,3)-α-L-Fuc-(1,4)-L-Rha structure in pectic rhamnogalacturonan II.","protein_coding","RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 2 (RGXT2)","RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 2 (RGXT2)"]
["AT4G02410","Chr4:1059888-1062153","cs","ls","OK",8.66835,2.18115,-1.99067,3.95074,{"v":7.79e-05,"d":"7.79E-05"},0.00439366,"yes","GO:0006468 GO:0004674 GO:0009862 GO:0009625 GO:0031348 GO:0005886 GO:0005524","AT4G02410.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G02420.1); Has 115275 Blast hits to 113889 proteins in 4562 species: Archae - 89; Bacteria - 12949; Metazoa - 42488; Fungi - 9587; Plants - 33653; Viruses - 400; Other Eukaryotes - 16109 (source: NCBI BLink).","protein_coding"]
["AT4G02540","Chr4:1117153-1119817","cs","ls","OK",5.34625,0.184434,-4.85735,5.06262,{"v":4.14e-07,"d":"4.14E-07"},{"v":5.44e-05,"d":"5.44E-05"},"yes","GO:0005634 GO:0047134 GO:0008270 GO:0055114","AT4G02540.1","Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1656 Blast hits to 645 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 1649; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT4G04570","Chr4:2289958-2292755","cs","ls","OK",14.1941,1.62859,-3.12359,4.77309,{"v":1.81e-06,"d":"1.81E-06"},0.000186601,"yes","GO:0004674 GO:0006468 GO:0005576 GO:0004713 GO:0005524","AT4G04570.1","Encodes a cysteine-rich receptor-like protein kinase.","protein_coding","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 40 (CRK40)","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 40 (CRK40)"]
["AT4G04830","Chr4:2445793-2447086","cs","ls","OK",32.3391,5.36551,-2.5915,4.44316,{"v":8.86e-06,"d":"8.86E-06"},0.000730568,"yes","GO:0019344 GO:0005829 GO:0008113 GO:0055114 GO:0009507","AT4G04830.1","methionine sulfoxide reductase B5 (MSRB5); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B4 (TAIR:AT4G04810.1); Has 8417 Blast hits to 8406 proteins in 2250 species: Archae - 78; Bacteria - 4939; Metazoa - 269; Fungi - 135; Plants - 208; Viruses - 1; Other Eukaryotes - 2787 (source: NCBI BLink).","protein_coding","METHIONINE SULFOXIDE REDUCTASE B5 (MSRB5)","METHIONINE SULFOXIDE REDUCTASE B5 (MSRB5)"]
["AT4G05320","Chr4:2718169-2720308","cs","ls","OK",1057.09,231.782,-2.18926,6.54548,{"v":5.93e-11,"d":"5.93E-11"},{"v":2.74e-08,"d":"2.74E-08"},"yes","GO:0009751 GO:0007568 GO:0006464","AT4G05320.2","One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.","protein_coding","POLYUBIQUITIN 10 (UBQ10)","POLYUBIQUITIN 10 (UBQ10)"]
["AT4G08035","Chr4:4866553-4868343","cs","ls","OK",48.5632,13.3921,-1.85848,4.53135,{"v":5.86e-06,"d":"5.86E-06"},0.000528988,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G08035.1","Unknown gene","other_rna"]
["AT4G09510","Chr4:6021163-6023873","cs","ls","OK",18.2563,7.82872,-1.22155,3.21412,0.00130846,0.0387022,"yes","GO:0010075 GO:0005634 GO:0005987 GO:0048364 GO:0004564 GO:0005829","AT4G09510.1","CINV2 appears to function as a neutral invertase based on the phenotype of a cinv1(AT1G35580)/cinv2 double mutant. It is predicted to be a cytosolic enzyme. CINV1, CINV2, and possibly other cytosolic invertases may play an important role in supplying carbon from sucrose to non-photosynthetic tissues.","protein_coding","CYTOSOLIC INVERTASE 2 (CINV2)","CYTOSOLIC INVERTASE 2 (CINV2)"]
["AT4G09680","Chr4:6116754-6123304","cs","ls","OK",4.19681,0.770774,-2.44492,4.43308,{"v":9.29e-06,"d":"9.29E-06"},0.000749631,"yes","GO:0000723 GO:0000781 GO:0005634 GO:0010048 GO:0005515","AT4G09680.1","Encodes CTC1 (Conserved Telomere Maintenance Component 1) involved in telomere maintenance.","protein_coding","CONSERVED TELOMERE MAINTENANCE COMPONENT 1 (CTC1)","(ATCTC1)"]
["AT4G10060","Chr4:6288826-6295402","cs","ls","OK",47.4233,19.4601,-1.28508,4.18553,{"v":2.84e-05,"d":"2.84E-05"},0.00186389,"yes","GO:0004348 GO:0005773 GO:0016021 GO:0006680 GO:0005886 GO:0010103","AT4G10060.1","Beta-glucosidase, GBA2 type family protein; FUNCTIONS IN: catalytic activity, glucosylceramidase activity; INVOLVED IN: glucosylceramide catabolic process, sphingolipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosylceramidase (InterPro:IPR006775), Six-hairpin glycosidase-like (InterPro:IPR008928), Beta-glucosidase, GBA2 type (InterPro:IPR014551); BEST Arabidopsis thaliana protein match is: Beta-glucosidase, GBA2 type family protein (TAIR:AT1G33700.2); Has 794 Blast hits to 727 proteins in 173 species: Archae - 72; Bacteria - 219; Metazoa - 159; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).","protein_coding"]
["AT4G10770","Chr4:6628403-6632599","cs","ls","OK",12.8759,3.64237,-1.82172,4.48372,{"v":7.34e-06,"d":"7.34E-06"},0.000638666,"yes","GO:0006857 GO:0016020 GO:0055085 GO:0015198","AT4G10770.1","oligopeptide transporter","protein_coding","OLIGOPEPTIDE TRANSPORTER 7 (OPT7)","ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7 (ATOPT7)"]
["AT4G11280","Chr4:6864096-6866116","cs","ls","OK",30.4832,14.3507,-1.0869,3.18314,0.00145686,0.0417318,"yes","GO:0005737 GO:0071281 GO:0016847 GO:0009737 GO:0010200 GO:0009753 GO:0042218 GO:0009612 GO:0009723 GO:0016740 GO:0009733 GO:0030170 GO:0009611 GO:0006979 GO:0042802","AT4G11280.1","encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family","protein_coding","1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6 (ACS6)","(ATACS6)"]
["AT4G11830","Chr4:7115735-7121245","cs","ls","OK",10.5512,1.48394,-2.82991,6.4761,{"v":9.41e-11,"d":"9.41E-11"},{"v":3.98e-08,"d":"3.98E-08"},"yes","GO:0009395 GO:0022626 GO:0006643 GO:0016020 GO:0046470 GO:0005509 GO:0004630 GO:0006979 GO:0009507","AT4G11830.2","Encodes one of three phospholipase D enzymes of the gamma class.","protein_coding","PHOSPHOLIPASE D GAMMA 2 (PLDGAMMA2)","PHOSPHOLIPASE D GAMMA 2 (PLDGAMMA2)"]
["AT4G12730","Chr4:7491382-7492876","cs","ls","OK",57.3549,23.5503,-1.28417,3.91803,{"v":8.93e-05,"d":"8.93E-05"},0.00489553,"yes","GO:0006084 GO:0016126 GO:0007030 GO:0048767 GO:0016132 GO:0010583 GO:0006816 GO:0005774 GO:0046658 GO:0009651","AT4G12730.1","AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds","protein_coding","FASCICLIN-LIKE ARABINOGALACTAN 2 (FLA2)","FASCICLIN-LIKE ARABINOGALACTAN 2 (FLA2)"]
["AT4G13395","Chr4:7785686-7786113","cs","ls","OK",16.0178,0.865996,-4.20917,3.86942,0.000109093,0.00574118,"yes","GO:0048367 GO:0003674 GO:0005739","AT4G13395.1","ROTUNDIFOLIA like 12 (RTFL12); CONTAINS InterPro DOMAIN/s: DVL (InterPro:IPR012552); BEST Arabidopsis thaliana protein match is: ROTUNDIFOLIA like 10 (TAIR:AT3G14362.1); Has 139 Blast hits to 139 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","ROTUNDIFOLIA LIKE 12 (RTFL12)","DEVIL 10 (DVL10)"]
["AT4G13495","Chr4:7842966-7846899","cs","ls","OK",489.166,141.48,-1.78973,5.39301,{"v":6.93e-08,"d":"6.93E-08"},{"v":1.15e-05,"d":"1.15E-05"},"yes","GO:0005575 GO:0003674 GO:0008150","AT4G13495.1","Unknown gene","other_rna"]
["AT4G13630","Chr4:7933860-7936565","cs","ls","OK",9.87509,0.83557,-3.56296,5.64885,{"v":1.62e-08,"d":"1.62E-08"},{"v":3.17e-06,"d":"3.17E-06"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G13630.1","Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G04890.1); Has 608 Blast hits to 585 proteins in 84 species: Archae - 0; Bacteria - 9; Metazoa - 158; Fungi - 22; Plants - 359; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).","protein_coding"]
["AT4G13810","Chr4:8005031-8007510","cs","ls","OK",1.91366,0.156637,-3.61084,3.70617,0.000210418,0.00955837,"yes","GO:0006952 GO:0005886 GO:0006863 GO:0007165","AT4G13810.1","receptor like protein 47 (RLP47); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 50 (TAIR:AT4G13920.1); Has 94456 Blast hits to 27387 proteins in 1128 species: Archae - 39; Bacteria - 7351; Metazoa - 18966; Fungi - 1097; Plants - 59830; Viruses - 28; Other Eukaryotes - 7145 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 47 (RLP47)","RECEPTOR LIKE PROTEIN 47 (RLP47)"]
["AT4G14400","Chr4:8294445-8298602","cs","ls","OK",46.0959,0.41688,-6.78886,9.18426,0,0,"yes","GO:0009816 GO:0009615 GO:0008219 GO:0016020 GO:0009751","AT4G14400.1","encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.","protein_coding","ACCELERATED CELL DEATH 6 (ACD6)","ACCELERATED CELL DEATH 6 (ACD6)"]
["AT4G14610","Chr4:8380847-8383496","cs","ls","OK",1.95975,0.31062,-2.65744,3.27071,0.00107279,0.0331898,"yes","GO:0006499","AT4G14610.1","pseudogene, disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein.; blastp match of 45% identity and 2.2e-162 P-value to GP|24461866|gb|AAN62353.1|AF506028_20|AF506028 NBS-LRR type disease resistance protein {Poncirus trifoliata}","pseudogene"]
["AT4G15258","Chr4:8713225-8713353","cs","ls","OK",1034.88,60.7856,-4.08959,4.92158,{"v":8.58e-07,"d":"8.58E-07"},{"v":9.91e-05,"d":"9.91E-05"},"yes","GO:0031428 GO:0003674 GO:0031167","AT4G15258.1","Encodes a C/D box snoRNA (snoR37-2). Gb: AJ505638","small_nucleolar_rna","SMALL NUCLEOLAR RNA37-2 (SNOR37-2)","SMALL NUCLEOLAR RNA37-2 (SNOR37-2)"]
["AT4G15260","Chr4:8713688-8715339","cs","ls","OK",2.38472,0.0637857,-5.22444,4.29353,{"v":1.76e-05,"d":"1.76E-05"},0.00130748,"yes","GO:0005575 GO:0016758 GO:0019344 GO:0008194","AT4G15260.1","UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71B5 (TAIR:AT4G15280.1); Has 7322 Blast hits to 7283 proteins in 449 species: Archae - 0; Bacteria - 472; Metazoa - 1888; Fungi - 30; Plants - 4859; Viruses - 20; Other Eukaryotes - 53 (source: NCBI BLink).","protein_coding"]
["AT4G15690","Chr4:8934323-8934921","cs","ls","OK",54.8934,10.2878,-2.4157,4.58153,{"v":4.62e-06,"d":"4.62E-06"},0.000434205,"yes","GO:0005737 GO:0048653 GO:0008794 GO:0045454 GO:0015035 GO:0009055","AT4G15690.1","Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G15700.1); Has 1698 Blast hits to 1693 proteins in 230 species: Archae - 0; Bacteria - 23; Metazoa - 485; Fungi - 319; Plants - 757; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).","protein_coding"]
["AT4G16845","Chr4:9476142-9479878","cs","ls","OK",16.747,6.51596,-1.36185,3.4028,0.000666996,0.0234558,"yes","GO:0003700 GO:0006349 GO:0010048 GO:0016571 GO:0005677","AT4G16845.1","The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3","protein_coding","REDUCED VERNALIZATION RESPONSE 2 (VRN2)","REDUCED VERNALIZATION RESPONSE 2 (VRN2)"]
["AT4G16860","Chr4:9488465-9495816","cs","ls","OK",17.0773,6.95661,-1.29562,3.88532,0.000102196,0.00546819,"yes","GO:0009817 GO:0005622 GO:0007165 GO:0043531 GO:0030275","AT4G16860.1","Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 4 (RPP4)","RECOGNITION OF PERONOSPORA PARASITICA 4 (RPP4)"]
["AT4G16880","Chr4:9496184-9497313","cs","ls","OK",15.2592,0.649479,-4.55425,5.55204,{"v":2.82e-08,"d":"2.82E-08"},{"v":5.14e-06,"d":"5.14E-06"},"yes","GO:0008150 GO:0005634 GO:0003674","AT4G16880.1","Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT4G16890","Chr4:9500505-9505455","cs","ls","OK",35.3841,5.28063,-2.74432,8.24664,{"v":2.22e-16,"d":"2.22E-16"},{"v":2.94e-13,"d":"2.94E-13"},"yes","GO:0009733 GO:0005515 GO:0009816 GO:0009862 GO:0005634 GO:0017111 GO:0043531 GO:0005829","AT4G16890.1","Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.","protein_coding","SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1)","BALL (BAL)"]
["AT4G16900","Chr4:9511858-9516541","cs","ls","OK",3.91577,0.79046,-2.30853,3.93559,{"v":8.3e-05,"d":"8.30E-05"},0.00462071,"yes","GO:0006952 GO:0007165 GO:0043531 GO:0005622","AT4G16900.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G16950","Chr4:9538797-9544467","cs","ls","OK",33.6348,9.77553,-1.78271,5.71435,{"v":1.1e-08,"d":"1.10E-08"},{"v":2.35e-06,"d":"2.35E-06"},"yes","GO:0009817 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT4G16950.1","Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5)","RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5)"]
["AT4G16980","Chr4:9556977-9557812","cs","ls","OK",254.082,103.594,-1.29435,4.23907,{"v":2.24e-05,"d":"2.24E-05"},0.00154702,"yes","GO:0009651 GO:0019684 GO:0006833 GO:0009750 GO:0005886","AT4G16980.1","arabinogalactan-protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 61554 Blast hits to 29210 proteins in 1485 species: Archae - 170; Bacteria - 11775; Metazoa - 21955; Fungi - 6238; Plants - 10828; Viruses - 2421; Other Eukaryotes - 8167 (source: NCBI BLink).","protein_coding"]
["AT4G16990","Chr4:9560134-9565555","cs","ls","OK",122.921,44.3623,-1.47032,4.59845,{"v":4.26e-06,"d":"4.26E-06"},0.000406218,"yes","GO:0005737 GO:0009817 GO:0005634 GO:0007165 GO:0043531 GO:0015979","AT4G16990.2","RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT4G16890.1); Has 6697 Blast hits to 6313 proteins in 180 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 6691; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3)","RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3)"]
["AT4G17490","Chr4:9752823-9753867","cs","ls","OK",10.9533,1.2951,-3.08022,4.27205,{"v":1.94e-05,"d":"1.94E-05"},0.00140837,"yes","GO:0010200 GO:0003700 GO:0005634 GO:0000302 GO:0006355 GO:0002679 GO:0005515 GO:0009873 GO:0009644","AT4G17490.1","Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.","protein_coding","ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6 (ERF6)","ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6 (ATERF6)"]
["AT4G18205","Chr4:10073757-10075271","cs","ls","OK",12.9178,3.03983,-2.0873,4.21123,{"v":2.54e-05,"d":"2.54E-05"},0.00170336,"yes","GO:0005575 GO:0003674 GO:0008150","AT4G18205.1","Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: purine permease 7 (TAIR:AT4G18197.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT4G18210","Chr4:10076078-10077748","cs","ls","OK",3.91417,0.772538,-2.34103,3.11891,0.00181522,0.0489592,"yes","GO:0005737 GO:0016020 GO:0005345 GO:0006863 GO:0009624","AT4G18210.1","Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.","protein_coding","PURINE PERMEASE 10 (PUP10)","PURINE PERMEASE 10 (PUP10)"]
["AT4G19510","Chr4:10633684-10639001","cs","ls","OK",10.5534,0.0673294,-7.29225,5.95529,{"v":2.6e-09,"d":"2.60E-09"},{"v":6.69e-07,"d":"6.69E-07"},"yes","GO:0006952 GO:0007165 GO:0043531 GO:0005622","AT4G19510.1","Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G12010.1); Has 24495 Blast hits to 16844 proteins in 780 species: Archae - 22; Bacteria - 1657; Metazoa - 3405; Fungi - 143; Plants - 18330; Viruses - 4; Other Eukaryotes - 934 (source: NCBI BLink).","protein_coding"]
["AT4G19520","Chr4:10639268-10647079","cs","ls","OK",6.18799,2.75198,-1.169,3.13267,0.00173227,0.0474306,"yes","GO:0006952 GO:0005634 GO:0007165 GO:0043531 GO:0071456","AT4G19520.1","disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT4G21410","Chr4:11402313-11405056","cs","ls","OK",6.96641,1.9464,-1.83961,3.46337,0.000533456,0.0195381,"yes","GO:0006468 GO:0009737 GO:0005773 GO:0004674 GO:0005576 GO:0005886 GO:0005524","AT4G21410.1","Encodes a cysteine-rich receptor-like protein kinase.","protein_coding","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 29 (CRK29)","CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 29 (CRK29)"]
["AT4G21650","Chr4:11501197-11504678","cs","ls","OK",6.23552,0.266581,-4.54786,5.75231,{"v":8.8e-09,"d":"8.80E-09"},{"v":2.06e-06,"d":"2.06E-06"},"yes","GO:0004252 GO:0043086 GO:0005576 GO:0006508 GO:0009505 GO:0042802","AT4G21650.1","Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G21630.1); Has 7770 Blast hits to 6733 proteins in 1165 species: Archae - 228; Bacteria - 4634; Metazoa - 31; Fungi - 250; Plants - 1972; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).","protein_coding"]
["AT4G21870","Chr4:11603567-11604331","cs","ls","OK",45.2537,18.4668,-1.29311,3.14315,0.00167141,0.0463298,"yes","GO:0005737 GO:0009408 GO:0009644 GO:0042542","AT4G21870.1","HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 2331 Blast hits to 2331 proteins in 523 species: Archae - 47; Bacteria - 802; Metazoa - 2; Fungi - 44; Plants - 1239; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).","protein_coding"]
["AT4G22690","Chr4:11929358-11931693","cs","ls","OK",42.6745,20.8637,-1.03238,3.33456,0.00085435,0.0283133,"yes","GO:0005794 GO:0019825 GO:0020037 GO:0005618 GO:0016705 GO:0005739 GO:0005774 GO:0005886 GO:0009055 GO:0055114 GO:0009507","AT4G22690.1","member of CYP706A","protein_coding","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 1\" (CYP706A1)","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 1\" (CYP706A1)"]
["AT4G22710","Chr4:11934968-11936755","cs","ls","OK",33.1662,10.8206,-1.61594,4.54592,{"v":5.47e-06,"d":"5.47E-06"},0.000502666,"yes","GO:0005794 GO:0019825 GO:0020037 GO:0016705 GO:0006499 GO:0009506 GO:0009055 GO:0055114 GO:0009507","AT4G22710.1","member of CYP706A","protein_coding","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 2\" (CYP706A2)","\"CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 2\" (CYP706A2)"]
["AT4G24540","Chr4:12670964-12674072","cs","ls","OK",14.0955,2.9235,-2.26946,3.72861,0.000192537,0.00906663,"yes","GO:0005737 GO:0043565 GO:0010582 GO:0010076 GO:0010077 GO:0003700 GO:0005634 GO:0000060 GO:0048510 GO:0045893 GO:0010220 GO:0048481 GO:0046982 GO:0009739 GO:0042803","AT4G24540.1","Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.","protein_coding","AGAMOUS-LIKE 24 (AGL24)","AGAMOUS-LIKE 24 (AGL24)"]
["AT4G24570","Chr4:12686458-12687650","cs","ls","OK",71.9143,24.9346,-1.52813,4.47568,{"v":7.62e-06,"d":"7.62E-06"},0.000657393,"yes","GO:0010200 GO:0005310 GO:0009611 GO:0009612 GO:0005743 GO:0009693 GO:0006839 GO:0055085","AT4G24570.1","Encodes one of the mitochondrial dicarboxylate carriers (DIC): DIC1 (AT2G22500), DIC2 (AT4G24570), DIC3 (AT5G09470).","protein_coding","DICARBOXYLATE CARRIER 2 (DIC2)","DICARBOXYLATE CARRIER 2 (DIC2)"]
["AT4G25110","Chr4:12887517-12890262","cs","ls","OK",1.48612,0.108432,-3.77668,3.22218,0.0012722,0.0378059,"yes","GO:0006508 GO:0002237 GO:0004197 GO:0043069","AT4G25110.1","Encodes a type I metacaspase. Two Arabidopsis metacaspases, AT1G02170 (MC1) and AT4G25110 (MC2) antagonistically control programmed cell death in Arabidopsis. MC1 is a positive regulator of cell death and requires conserved caspase-like putative catalytic residues for its function. MC2 negatively regulates cell death. This function is independent of the putative catalytic residues. A third type I Arabidopsis metacaspase is MC3 (AT5g64240).","protein_coding","METACASPASE 2 (MC2)","METACASPASE 2 (AtMC2)"]
["AT4G25300","Chr4:12945172-12946778","cs","ls","OK",4.32366,0.741099,-2.54451,3.11165,0.00186046,0.0498694,"yes","GO:0005737 GO:0016706 GO:0009813 GO:0055114","AT4G25300.1","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25310.1); Has 8488 Blast hits to 8445 proteins in 990 species: Archae - 0; Bacteria - 1083; Metazoa - 108; Fungi - 972; Plants - 4966; Viruses - 0; Other Eukaryotes - 1359 (source: NCBI BLink).","protein_coding"]
["AT4G25940","Chr4:13169640-13172881","cs","ls","OK",6.53946,1.48692,-2.13684,3.64255,0.000269953,0.0117261,"yes","GO:0005634 GO:0005545 GO:0048268 GO:0030276 GO:0006944 GO:0030118","AT4G25940.1","ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT5G57200.1); Has 8063 Blast hits to 4237 proteins in 339 species: Archae - 25; Bacteria - 270; Metazoa - 3478; Fungi - 641; Plants - 597; Viruses - 312; Other Eukaryotes - 2740 (source: NCBI BLink).","protein_coding"]
["AT4G28860","Chr4:14246282-14249544","cs","ls","OK",37.9816,13.3637,-1.50698,3.49099,0.000481237,0.0181272,"yes","GO:0005737 GO:0004674 GO:0005634 GO:0046777 GO:0005524","AT4G28860.1","casein kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 3 (TAIR:AT4G28880.1); Has 66689 Blast hits to 66255 proteins in 2362 species: Archae - 56; Bacteria - 11242; Metazoa - 25400; Fungi - 7755; Plants - 10110; Viruses - 362; Other Eukaryotes - 11764 (source: NCBI BLink).","protein_coding","CASEIN KINASE I-LIKE 4 (ckl4)","CASEIN KINASE I-LIKE 4 (ckl4)"]
["AT4G29050","Chr4:14314817-14316879","cs","ls","OK",0.718312,0.0390585,-4.2009,3.33654,0.000848277,0.0282322,"yes","GO:0004674 GO:0006468 GO:0030246 GO:0005524 GO:0005886","AT4G29050.1","Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT1G70110.1); Has 123408 Blast hits to 121938 proteins in 4814 species: Archae - 120; Bacteria - 14220; Metazoa - 44809; Fungi - 10855; Plants - 34836; Viruses - 425; Other Eukaryotes - 18143 (source: NCBI BLink).","protein_coding"]
["AT4G30110","Chr4:14720240-14724584","cs","ls","OK",11.7567,4.73729,-1.31135,3.41059,0.000648223,0.0228966,"yes","GO:0015434 GO:0055069 GO:0016021 GO:0030001 GO:0005886 GO:0015662 GO:0046872 GO:0006754 GO:0005524","AT4G30110.1","encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc","protein_coding","HEAVY METAL ATPASE 2 (HMA2)","HEAVY METAL ATPASE 2 (HMA2)"]
["AT4G33050","Chr4:15944321-15947026","cs","ls","OK",19.5705,4.88847,-2.00122,4.47321,{"v":7.71e-06,"d":"7.71E-06"},0.000662157,"yes","GO:0009595 GO:0000165 GO:0006612 GO:0031348 GO:0009697 GO:0042742 GO:0005737 GO:0010310 GO:0009862 GO:0005634 GO:0009867 GO:0006569 GO:0043069 GO:0009581 GO:0009684 GO:0050832 GO:0043900 GO:0010119 GO:0009646 GO:0010200 GO:0010363 GO:0030968 GO:0009625 GO","AT4G33050.2","Encodes a calmodulin-binding protein involved in stomatal movement.","protein_coding","EMBRYO SAC DEVELOPMENT ARREST 39 (EDA39)","EMBRYO SAC DEVELOPMENT ARREST 39 (EDA39)"]
["AT4G36430","Chr4:17204477-17205966","cs","ls","OK",1.21864,0.0439994,-4.79164,3.16136,0.00157033,0.0444463,"yes","GO:0020037 GO:0005618 GO:0004601 GO:0005576 GO:0051707 GO:0006979 GO:0055114","AT4G36430.1","Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to other organism; LOCATED IN: cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4559 Blast hits to 4526 proteins in 292 species: Archae - 0; Bacteria - 6; Metazoa - 6; Fungi - 128; Plants - 4346; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).","protein_coding"]
["AT4G37300","Chr4:17554640-17555861","cs","ls","OK",66.6792,22.1407,-1.59054,4.71385,{"v":2.43e-06,"d":"2.43E-06"},0.000243706,"yes","GO:0009793 GO:0003674 GO:0005634","AT4G37300.1","maternal effect embryo arrest 59 (MEE59); Has 70 Blast hits to 70 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding","MATERNAL EFFECT EMBRYO ARREST 59 (MEE59)","MATERNAL EFFECT EMBRYO ARREST 59 (MEE59)"]
["AT4G37320","Chr4:17559579-17561727","cs","ls","OK",3.46073,0.400621,-3.11077,3.63357,0.000279526,0.0118565,"yes","GO:0016705 GO:0019825 GO:0055114 GO:0020037 GO:0009055","AT4G37320.1","member of CYP81D","protein_coding","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 5\" (CYP81D5)","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 5\" (CYP81D5)"]
["AT4G37410","Chr4:17590768-17592920","cs","ls","OK",12.3911,3.90159,-1.66717,3.50397,0.000458379,0.017365,"yes","GO:0042343 GO:0004497 GO:0016705 GO:0005783 GO:0020037 GO:0000041 GO:0019825 GO:0055114 GO:0009055","AT4G37410.1","member of CYP81F","protein_coding","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 4\" (CYP81F4)","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 4\" (CYP81F4)"]
["AT4G37530","Chr4:17634783-17636288","cs","ls","OK",5.28798,0.341255,-3.95379,4.2407,{"v":2.23e-05,"d":"2.23E-05"},0.00154283,"yes","GO:0020037 GO:0004601 GO:0005576 GO:0005515 GO:0009651 GO:0006979 GO:0055114","AT4G37530.1","Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G37520.1); Has 4599 Blast hits to 4569 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 225; Plants - 4296; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).","protein_coding"]
["AT4G37610","Chr4:17668950-17672353","cs","ls","OK",54.0512,13.0067,-2.05508,5.67589,{"v":1.38e-08,"d":"1.38E-08"},{"v":2.79e-06,"d":"2.79E-06"},"yes","GO:0005737 GO:0009733 GO:0009954 GO:0009751 GO:0010200 GO:0042542 GO:0005634 GO:0004402 GO:0003712 GO:0006355 GO:0008270 GO:0009409 GO:0010227 GO:0048439 GO:0005516","AT4G37610.1","BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.","protein_coding","BTB AND TAZ DOMAIN PROTEIN 5 (bt5)","BTB AND TAZ DOMAIN PROTEIN 5 (bt5)"]
["AT4G39770","Chr4:18448979-18451293","cs","ls","OK",16.3569,5.1303,-1.67278,3.62214,0.000292174,0.012244,"yes","GO:0005737 GO:0005992 GO:0004805","AT4G39770.1","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G22190.1); Has 2411 Blast hits to 2406 proteins in 857 species: Archae - 41; Bacteria - 1356; Metazoa - 219; Fungi - 156; Plants - 489; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).","protein_coding","TREHALOSE-6-PHOSPHATE PHOSPHATASE H (TPPH)","TREHALOSE-6-PHOSPHATE PHOSPHATASE H (TPPH)"]
["AT5G03350","Chr5:815673-816658","cs","ls","OK",62.5564,9.54396,-2.7125,6.59628,{"v":4.22e-11,"d":"4.22E-11"},{"v":1.99e-08,"d":"1.99E-08"},"yes","GO:0005618 GO:0030246 GO:0048046 GO:0008150 GO:0005886 GO:0009507","AT5G03350.1","Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast, cell wall, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT3G16530.1); Has 1816 Blast hits to 1796 proteins in 114 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).","protein_coding"]
["AT5G03360","Chr5:817863-825149","cs","ls","OK",2.11681,0.126046,-4.06987,3.71916,0.000199888,0.00924457,"yes","GO:0005575 GO:0047134 GO:0055114","AT5G03360.1","DC1 domain-containing protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G26380.1); Has 3288 Blast hits to 689 proteins in 36 species: Archae - 2; Bacteria - 14; Metazoa - 5; Fungi - 0; Plants - 3251; Viruses - 4; Other Eukaryotes - 12 (source: NCBI BLink).","protein_coding"]
["AT5G03495","Chr5:873330-875251","cs","ls","OK",1.56928,0.0475771,-5.0437,3.35473,0.000794432,0.0270502,"yes","GO:0009507 GO:0008150 GO:0000166","AT5G03495.1","RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G03480.1); Has 197 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 193; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).","protein_coding"]
["AT5G05890","Chr5:1772542-1774113","cs","ls","OK",8.06574,0.780514,-3.36931,4.65343,{"v":3.26e-06,"d":"3.26E-06"},0.000320814,"yes","GO:0016758 GO:0005634 GO:0008194 GO:0008152","AT5G05890.1","UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G05880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G07580","Chr5:2399503-2400601","cs","ls","OK",71.9929,23.4847,-1.61613,4.73609,{"v":2.18e-06,"d":"2.18E-06"},0.000219548,"yes","GO:0003700 GO:0006355 GO:0005634 GO:0009873","AT5G07580.1","encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.","protein_coding"]
["AT5G07690","Chr5:2446763-2448543","cs","ls","OK",38.2475,12.8053,-1.57863,4.62759,{"v":3.7e-06,"d":"3.70E-06"},0.000358229,"yes","GO:0009751 GO:0009753 GO:0003700 GO:0009682 GO:0005634 GO:0009625 GO:0009611 GO:0050832 GO:0006355 GO:0010438 GO:0010439 GO:0009414 GO:0009739","AT5G07690.1","Encodes a putative transcription factor (MYB29).","protein_coding","MYB DOMAIN PROTEIN 29 (MYB29)","MYB DOMAIN PROTEIN 29 (MYB29)"]
["AT5G07770","Chr5:2474641-2479402","cs","ls","OK",2.62135,0.413063,-2.66588,3.27081,0.00107241,0.0331898,"yes","GO:0003779 GO:0007015 GO:0005634","AT5G07770.1","Actin-binding FH2 protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1); Has 32498 Blast hits to 13926 proteins in 764 species: Archae - 52; Bacteria - 3235; Metazoa - 13136; Fungi - 3419; Plants - 6778; Viruses - 1558; Other Eukaryotes - 4320 (source: NCBI BLink).","protein_coding"]
["AT5G10150","Chr5:3181982-3183865","cs","ls","OK",43.0495,15.4343,-1.47985,4.23457,{"v":2.29e-05,"d":"2.29E-05"},0.00156205,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G10150.1","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G17870","Chr5:5907774-5908335","cs","ls","OK",322.709,108.564,-1.57169,4.9909,{"v":6.01e-07,"d":"6.01E-07"},{"v":7.27e-05,"d":"7.27E-05"},"yes","GO:0003735 GO:0009507 GO:0006412 GO:0019843","AT5G17870.1","plastid-specific ribosomal protein 6 precursor (Psrp-6) - like","protein_coding","PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6 (PSRP6)","PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6 (PSRP6)"]
["AT5G17890","Chr5:5916969-5923355","cs","ls","OK",6.86347,0.00921845,-9.5402,6.80788,{"v":9.9e-12,"d":"9.90E-12"},{"v":6.34e-09,"d":"6.34E-09"},"yes","GO:0006952 GO:0009409 GO:0005634 GO:0008270 GO:0043531","AT5G17890.1","Encodes a protein that appears to be involved in defense responses. Contains TIR, NB-LRR and LIM domains. A gain of function allele exhibits cold dependent phenotypes including apparent activation of defense responses and an increased freezing tolerance.","protein_coding","DA1-RELATED PROTEIN 4 (DAR4)","(CHS3)"]
["AT5G17910","Chr5:5927361-5932775","cs","ls","OK",11.8804,4.90427,-1.27647,3.63791,0.000274858,0.0118044,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G17910.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G19190","Chr5:6457259-6458031","cs","ls","OK",121.302,36.5975,-1.72878,4.89656,{"v":9.75e-07,"d":"9.75E-07"},0.000109379,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G19190.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G20450","Chr5:6910548-6913317","cs","ls","OK",3.62052,0.279269,-3.69647,3.96493,{"v":7.34e-05,"d":"7.34E-05"},0.00420003,"yes","GO:0005737 GO:0003674 GO:0008150","AT5G20450.1","CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast hits to 1458 proteins in 355 species: Archae - 28; Bacteria - 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses - 3; Other Eukaryotes - 412 (source: NCBI BLink).","protein_coding"]
["AT5G21090","Chr5:7164602-7167255","cs","ls","OK",203.378,97.1283,-1.0662,3.57895,0.000344972,0.0139471,"yes","GO:0007030 GO:0009266 GO:0009627 GO:0006833 GO:0042744 GO:0007165 GO:0006972 GO:0005886 GO:0046686 GO:0009651 GO:0006096 GO:0034976","AT5G21090.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G43740.1); Has 79109 Blast hits to 18390 proteins in 732 species: Archae - 33; Bacteria - 1866; Metazoa - 5774; Fungi - 472; Plants - 66918; Viruses - 0; Other Eukaryotes - 4046 (source: NCBI BLink).","protein_coding"]
["AT5G21940","Chr5:7249267-7250539","cs","ls","OK",102.301,47.297,-1.113,3.62962,0.000283838,0.0120138,"yes","GO:0005634 GO:0008150 GO:0005515","AT5G21940.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G22880","Chr5:7651956-7652622","cs","ls","OK",299.15,120.251,-1.31482,4.26548,{"v":1.99e-05,"d":"1.99E-05"},0.00143992,"yes","GO:0005730 GO:0006334 GO:0008283 GO:0005515 GO:0003677 GO:0000786","AT5G22880.1","Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases.","protein_coding","HISTONE B2 (HTB2)","HISTONE B2 (HTB2)"]
["AT5G23010","Chr5:7703091-7706896","cs","ls","OK",206.281,57.0702,-1.8538,6.20485,{"v":5.47e-10,"d":"5.47E-10"},{"v":1.67e-07,"d":"1.67E-07"},"yes","GO:0019761 GO:0009625 GO:0009684 GO:0019344 GO:0009414 GO:0010177 GO:0009507","AT5G23010.1","Encodes a methylthioalkylmalate synthase, catalyzes the condensation reactions of the first two rounds of methionine chain elongation in the biosynthesis of methionine-derived glucosinolates.","protein_coding","METHYLTHIOALKYLMALATE SYNTHASE 1 (MAM1)","2-ISOPROPYLMALATE SYNTHASE 3 (IMS3)"]
["AT5G23510","Chr5:7926944-7929338","cs","ls","OK",13.0157,1.46226,-3.15399,4.51273,{"v":6.4e-06,"d":"6.40E-06"},0.000567146,"yes","GO:0005634","AT5G23510.2","unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G24150","Chr5:8172315-8175431","cs","ls","OK",20.6112,7.52427,-1.4538,3.76539,0.000166292,0.00805138,"yes","GO:0016126 GO:0004506 GO:0050660 GO:0019745 GO:0016021 GO:0005576 GO:0055114","AT5G24150.1","squalene monooxygenase gene homolog","protein_coding","(SQP1)","SQUALENE MONOOXYGENASE 5 (SQE5)"]
["AT5G24170","Chr5:8189482-8191392","cs","ls","OK",6.26821,0.681467,-3.20134,3.51537,0.000439133,0.0168286,"yes","GO:0006661 GO:0016021 GO:0003674 GO:0016192","AT5G24170.1","Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305), Vesicle transport protein, SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G23550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G24450","Chr5:8348241-8353303","cs","ls","OK",18.5256,6.42426,-1.52792,3.95514,{"v":7.65e-05,"d":"7.65E-05"},0.00433824,"yes","GO:0005634 GO:0003674 GO:0006487","AT5G24450.1","Transcription factor IIIC, subunit 5; CONTAINS InterPro DOMAIN/s: Transcription factor IIIC, subunit 5 (InterPro:IPR019136); BEST Arabidopsis thaliana protein match is: Transcription factor IIIC, subunit 5 (TAIR:AT3G49410.1); Has 680 Blast hits to 642 proteins in 201 species: Archae - 0; Bacteria - 19; Metazoa - 202; Fungi - 159; Plants - 80; Viruses - 10; Other Eukaryotes - 210 (source: NCBI BLink).","protein_coding"]
["AT5G24530","Chr5:8378832-8383401","cs","ls","OK",11.4924,3.08627,-1.89675,3.62887,0.000284668,0.0120233,"yes","GO:0005737 GO:0050832 GO:0009595 GO:0010310 GO:0010363 GO:0016706 GO:0009862 GO:0006612 GO:0000165 GO:0009813 GO:0009867 GO:0031348 GO:0043900 GO:0009697 GO:0042742 GO:0001666 GO:0034976 GO:0055114 GO:0010200","AT5G24530.1","Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.","protein_coding","DOWNY MILDEW RESISTANT 6 (DMR6)","DOWNY MILDEW RESISTANT 6 (DMR6)"]
["AT5G24735","Chr5:8468330-8469262","cs","ls","OK",48.1907,2.28732,-4.39702,5.97507,{"v":2.3e-09,"d":"2.30E-09"},{"v":6.01e-07,"d":"6.01E-07"},"yes","GO:0005575 GO:0003674 GO:0008150","AT5G24735.1","Unknown gene","other_rna"]
["AT5G24770","Chr5:8500475-8502224","cs","ls","OK",42.8167,9.43955,-2.18138,5.74643,{"v":9.11e-09,"d":"9.11E-09"},{"v":2.1e-06,"d":"2.10E-06"},"yes","GO:0042538 GO:0009753 GO:0005773 GO:0009611 GO:0046688 GO:0022626 GO:0002213 GO:0006979 GO:0003993 GO:0009507","AT5G24770.1","Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.","protein_coding","VEGETATIVE STORAGE PROTEIN 2 (VSP2)","VEGETATIVE STORAGE PROTEIN 2 (VSP2)"]
["AT5G24990","Chr5:8610536-8611694","cs","ls","OK",4.82275,0.393849,-3.61414,3.92298,{"v":8.75e-05,"d":"8.75E-05"},0.00480943,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G24990.1","Protein of unknown function (DUF1336); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT5G25010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G25250","Chr5:8749726-8751636","cs","ls","OK",5.95952,0.722855,-3.04342,3.87727,0.000105636,0.00562043,"yes","GO:0006897 GO:0005774 GO:0003674 GO:0071456 GO:0005768 GO:0009506","AT5G25250.1","SPFH/Band 7/PHB domain-containing membrane-associated protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G25260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","FLOTILLIN 1 (FLOT1)","FLOTILLIN 1 (FLOT1)"]
["AT5G25980","Chr5:9072726-9075690","cs","ls","OK",303.979,1.66545,-7.51191,13.8301,0,0,"yes","GO:0043169 GO:0019762 GO:0009737 GO:0005773 GO:0019137 GO:0005777 GO:0048046 GO:0010119 GO:0022626 GO:0002213 GO:0009506 GO:0009507","AT5G25980.2","Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism.","protein_coding","GLUCOSIDE GLUCOHYDROLASE 2 (TGG2)","BETA GLUCOSIDASE 37 (BGLU37)"]
["AT5G26920","Chr5:9475681-9478751","cs","ls","OK",5.74387,0.224529,-4.67705,5.18245,{"v":2.19e-07,"d":"2.19E-07"},{"v":3.08e-05,"d":"3.08E-05"},"yes","GO:0009595 GO:0009867 GO:0006612 GO:0031348 GO:0006944 GO:0043565 GO:0010310 GO:0080142 GO:0005634 GO:0000165 GO:0071456 GO:0010112 GO:0043069 GO:0050832 GO:0009409 GO:0010200 GO:0010363 GO:0009816 GO:0003700 GO:0002237 GO:0005516 GO:0009862 GO:0019684","AT5G26920.1","Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.","protein_coding","CAM-BINDING PROTEIN 60-LIKE G (CBP60G)","CAM-BINDING PROTEIN 60-LIKE G (CBP60G)"]
["AT5G26980","Chr5:9488147-9490816","cs","ls","OK",5.28051,1.09682,-2.26736,3.42225,0.000621048,0.022094,"yes","GO:0006891 GO:0030140 GO:0005802 GO:0006623 GO:0006944 GO:0045492 GO:0005484 GO:0010413","AT5G26980.1","member of SYP4 Gene Family","protein_coding","SYNTAXIN OF PLANTS 41 (SYP41)","SYNTAXIN OF PLANTS 41 (SYP41)"]
["AT5G27990","Chr5:10017035-10018441","cs","ls","OK",45.9053,6.68284,-2.78013,5.62886,{"v":1.81e-08,"d":"1.81E-08"},{"v":3.53e-06,"d":"3.53E-06"},"yes","GO:0005575 GO:0003674 GO:0008150","AT5G27990.1","Pre-rRNA-processing protein TSR2, conserved region; CONTAINS InterPro DOMAIN/s: Pre-rRNA-processing protein TSR2, conserved region (InterPro:IPR019398); BEST Arabidopsis thaliana protein match is: Pre-rRNA-processing protein TSR2, conserved region (TAIR:AT3G22510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G28350","Chr5:10320138-10326946","cs","ls","OK",9.78928,1.71992,-2.50886,5.27087,{"v":1.36e-07,"d":"1.36E-07"},{"v":2.06e-05,"d":"2.06E-05"},"yes","GO:0008150 GO:0005794 GO:0003674 GO:0009507","AT5G28350.1","Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G28630","Chr5:10636630-10637249","cs","ls","OK",21.7128,3.13275,-2.79305,3.68275,0.000230733,0.0102928,"yes","GO:0005575 GO:0003674 GO:0008150","AT5G28630.1","glycine-rich protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28610.1); Has 3156 Blast hits to 2062 proteins in 232 species: Archae - 6; Bacteria - 50; Metazoa - 1681; Fungi - 287; Plants - 258; Viruses - 160; Other Eukaryotes - 714 (source: NCBI BLink).","protein_coding"]
["AT5G28770","Chr5:10796458-10798222","cs","ls","OK",47.2381,20.2598,-1.22133,3.28746,0.00101097,0.0319582,"yes","GO:0030968 GO:0003700 GO:0005634 GO:0006355 GO:0009410 GO:0071333 GO:0071215 GO:0046982 GO:0042802","AT5G28770.2","bZIP protein BZO2H3 mRNA, partial cds","protein_coding","(BZO2H3)","(BZO2H3)"]
["AT5G35450","Chr5:13667685-13671184","cs","ls","OK",4.32896,0.829753,-2.38327,4.08721,{"v":4.37e-05,"d":"4.37E-05"},0.00265858,"yes","GO:0006952 GO:0043531 GO:0005886","AT5G35450.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G35490","Chr5:13689816-13690548","cs","ls","OK",4.09327,0.381212,-3.42459,3.49298,0.000477658,0.0180266,"yes","GO:0003674 GO:0008150","AT5G35490.1","Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. A maternally expressed imprinted gene.","protein_coding","MTO 1 RESPONDING UP 1 (MRU1)","MTO 1 RESPONDING UP 1 (MRU1)"]
["AT5G36910","Chr5:14561816-14562750","cs","ls","OK",28.8711,2.47446,-3.54444,5.29076,{"v":1.22e-07,"d":"1.22E-07"},{"v":1.92e-05,"d":"1.92E-05"},"yes","GO:0006952 GO:0005576 GO:0050827","AT5G36910.1","Encodes a thionin that is expressed at a low basal level in seedlings and shows circadian variation. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.","protein_coding","THIONIN 2.2 (THI2.2)","THIONIN 2.2 (THI2.2)"]
["AT5G37290","Chr5:14762369-14764344","cs","ls","OK",15.9233,3.71339,-2.10034,3.62345,0.000290695,0.0122258,"yes","GO:0005634 GO:0008150","AT5G37290.1","ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G37440","Chr5:14844358-14845560","cs","ls","OK",3.10163,0.407841,-2.92695,3.1646,0.00155298,0.0440828,"yes","GO:0005737 GO:0031072 GO:0006457 GO:0051082","AT5G37440.1","Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G37750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G37830","Chr5:15056187-15060777","cs","ls","OK",18.1831,7.05848,-1.36517,4.19883,{"v":2.68e-05,"d":"2.68E-05"},0.00177534,"yes","GO:0006751 GO:0005829 GO:0017168 GO:0009506","AT5G37830.1","Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.","protein_coding","OXOPROLINASE 1 (OXP1)","OXOPROLINASE 1 (OXP1)"]
["AT5G38290","Chr5:15303335-15305548","cs","ls","OK",30.3377,11.6659,-1.37881,3.21789,0.00129136,0.038318,"yes","GO:0004045 GO:0006783 GO:0016556 GO:0030154 GO:0009965 GO:0006412 GO:0009507","AT5G38290.2","Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G39020","Chr5:15616916-15619358","cs","ls","OK",2.62177,0.534862,-2.2933,3.2809,0.00103477,0.0323995,"yes","GO:0009595 GO:0009867 GO:0006612 GO:0031348 GO:0009697 GO:0042742 GO:0010310 GO:0009862 GO:0000165 GO:0004674 GO:0043069 GO:0005524 GO:0009581 GO:0006468 GO:0050832 GO:0043900 GO:0035304 GO:0010200 GO:0010363 GO:0009625 GO:0006355 GO:0002237","AT5G39020.1","Malectin/receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G39030.1); Has 113939 Blast hits to 112470 proteins in 4297 species: Archae - 118; Bacteria - 12172; Metazoa - 42643; Fungi - 9539; Plants - 32560; Viruses - 275; Other Eukaryotes - 16632 (source: NCBI BLink).","protein_coding"]
["AT5G39080","Chr5:15641657-15643161","cs","ls","OK",42.5832,17.796,-1.25873,3.72071,0.000198662,0.00923273,"yes","GO:0005575 GO:0016747","AT5G39080.1","HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G39050.1); Has 2008 Blast hits to 1990 proteins in 121 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 42; Plants - 1965; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).","protein_coding"]
["AT5G39790","Chr5:15932713-15935261","cs","ls","OK",26.3994,6.9553,-1.92432,4.41586,{"v":1.01e-05,"d":"1.01E-05"},0.000800566,"yes","GO:0030247 GO:0009507","AT5G39790.1","Encodes a chloroplast localized protein with starch binding activity that may be involved in carbohydrate metabolism.","protein_coding"]
["AT5G40170","Chr5:16065090-16067574","cs","ls","OK",11.6012,4.70217,-1.30287,3.40207,0.00066878,0.0234558,"yes","GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0031348 GO:0009867 GO:0016301 GO:0005886 GO:0035304","AT5G40170.1","receptor like protein 54 (RLP54); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 27 (TAIR:AT2G33060.1); Has 95502 Blast hits to 27133 proteins in 1050 species: Archae - 52; Bacteria - 4975; Metazoa - 18576; Fungi - 1120; Plants - 63605; Viruses - 17; Other Eukaryotes - 7157 (source: NCBI BLink).","protein_coding","RECEPTOR LIKE PROTEIN 54 (RLP54)","RECEPTOR LIKE PROTEIN 54 (AtRLP54)"]
["AT5G40330","Chr5:16127724-16129655","cs","ls","OK",11.7435,2.52022,-2.22024,3.48141,0.000498783,0.0185446,"yes","GO:0048629 GO:0010053 GO:0003700 GO:0010091 GO:0005634 GO:0006355 GO:0005515","AT5G40330.1","Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.","protein_coding","MYB DOMAIN PROTEIN 23 (MYB23)","MYB DOMAIN PROTEIN 23 (MYB23)"]
["AT5G40500","Chr5:16227833-16228693","cs","ls","OK",63.8312,19.6884,-1.69692,3.835,0.000125566,0.00635871,"yes","GO:0006661 GO:0003674 GO:0005739","AT5G40500.1","unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G41140","Chr5:16468433-16477013","cs","ls","OK",38.8187,14.7279,-1.3982,4.1646,{"v":3.12e-05,"d":"3.12E-05"},0.00199729,"yes","GO:0005575 GO:0003674 GO:0008150","AT5G41140.1","Myosin heavy chain-related protein; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G63300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G41740","Chr5:16688625-16693119","cs","ls","OK",4.09553,0.346383,-3.56361,5.00332,{"v":5.64e-07,"d":"5.64E-07"},{"v":6.95e-05,"d":"6.95E-05"},"yes","GO:0006952 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT5G41740.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 3146 Blast hits to 2582 proteins in 174 species: Archae - 0; Bacteria - 334; Metazoa - 256; Fungi - 13; Plants - 2498; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).","protein_coding"]
["AT5G41750","Chr5:16693908-16698943","cs","ls","OK",5.27927,1.63978,-1.68683,3.64014,0.000272492,0.011779,"yes","GO:0006952 GO:0005634 GO:0017111 GO:0043531 GO:0007165","AT5G41750.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G42530","Chr5:17004737-17005393","cs","ls","OK",237.7,29.3934,-3.01558,7.37942,{"v":1.59e-13,"d":"1.59E-13"},{"v":1.26e-10,"d":"1.26E-10"},"yes","GO:0008150 GO:0003674 GO:0005739","AT5G42530.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G42800","Chr5:17164140-17165918","cs","ls","OK",33.182,13.0181,-1.34989,3.73157,0.000190288,0.00905854,"yes","GO:0050662 GO:0009744 GO:0009718 GO:0000166 GO:0045552 GO:0042406 GO:0010224","AT5G42800.1","dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. Not expressed in roots (qRT-PCR).","protein_coding","DIHYDROFLAVONOL 4-REDUCTASE (DFR)","DIHYDROFLAVONOL 4-REDUCTASE (DFR)"]
["AT5G42830","Chr5:17176383-17178018","cs","ls","OK",1.78368,0.138875,-3.683,3.3144,0.000918409,0.0297898,"yes","GO:0005829 GO:0016747","AT5G42830.1","HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G07850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G43050","Chr5:17268024-17269024","cs","ls","OK",19.6148,1.66503,-3.55833,4.5784,{"v":4.69e-06,"d":"4.69E-06"},0.000436678,"yes","GO:0010196 GO:0003674 GO:0009507","AT5G43050.1","Chloroplast localized YCF20-like gene involved in nonphotochemical quenching. Has overlapping functions with npq7","protein_coding","NONPHOTOCHEMICAL QUENCHING 6 (NPQ6)","NONPHOTOCHEMICAL QUENCHING 6 (NPQ6)"]
["AT5G43150","Chr5:17325012-17325923","cs","ls","OK",50.2491,11.1526,-2.17172,4.43752,{"v":9.1e-06,"d":"9.10E-06"},0.000743385,"yes","GO:0015996 GO:0003674 GO:0005739","AT5G43150.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G43210","Chr5:17347566-17348641","cs","ls","OK",12.018,1.37665,-3.12597,3.87668,0.000105891,0.00562043,"yes","GO:0004518 GO:0005634 GO:0006281","AT5G43210.1","Excinuclease ABC, C subunit, N-terminal; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305); BEST Arabidopsis thaliana protein match is: Excinuclease ABC, C subunit, N-terminal (TAIR:AT2G30350.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G43440","Chr5:17453597-17456657","cs","ls","OK",19.9339,4.14792,-2.26476,3.82146,0.000132662,0.00663344,"yes","GO:0005737 GO:0016706 GO:0009815 GO:0055114","AT5G43440.1","encodes a protein whose sequence is similar to ACC oxidase","protein_coding"]
["AT5G43470","Chr5:17462546-17467643","cs","ls","OK",29.7268,9.2785,-1.6798,5.02744,{"v":4.97e-07,"d":"4.97E-07"},{"v":6.25e-05,"d":"6.25E-05"},"yes","GO:0009626 GO:0009416 GO:0051607 GO:0043531 GO:0005886","AT5G43470.1","Confers resistance to Peronospora parasitica. In arabidopsis ecotype Dijon-17, HRT-mediated signaling is dependent on light for the induction of hypersensitive response and resistance to turnip crinkle virus.","protein_coding","RECOGNITION OF PERONOSPORA PARASITICA 8 (RPP8)","RESISTANT TO CMV(Y) 1 (RCY1)"]
["AT5G43620","Chr5:17522519-17524001","cs","ls","OK",1.95393,0.183882,-3.40953,3.3382,0.000843223,0.0281798,"yes","GO:0005634 GO:0008150 GO:0008270","AT5G43620.1","Pre-mRNA cleavage complex II; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Pre-mRNA cleavage complex II (TAIR:AT1G66500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G43740","Chr5:17564737-17568802","cs","ls","OK",10.4493,2.91277,-1.84294,4.46413,{"v":8.04e-06,"d":"8.04E-06"},0.000683719,"yes","GO:0006952 GO:0043531","AT5G43740.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 13811 Blast hits to 13486 proteins in 476 species: Archae - 7; Bacteria - 232; Metazoa - 616; Fungi - 57; Plants - 12812; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).","protein_coding"]
["AT5G43860","Chr5:17630449-17632312","cs","ls","OK",3.20614,0.253674,-3.65979,3.46055,0.000539082,0.0197078,"yes","GO:0015996 GO:0047746 GO:0009507","AT5G43860.1","Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation.","protein_coding","CHLOROPHYLLASE 2 (CLH2)","ARABIDOPSIS THALIANA CHLOROPHYLLASE 2 (ATCLH2)"]
["AT5G45420","Chr5:18404068-18406606","cs","ls","OK",41.3364,9.05077,-2.1913,5.23682,{"v":1.63e-07,"d":"1.63E-07"},{"v":2.37e-05,"d":"2.37E-05"},"yes","GO:0003700 GO:0005634 GO:0048767 GO:0005783 GO:0005886","AT5G45420.1","The gene encodes a MYB transcription factor belons to R2R3-MYB family of transcription factors. Knock-down mutant analysis indicates its role in root hair elongation.","protein_coding","MEMBRANE ANCHORED MYB (maMYB)","MEMBRANE ANCHORED MYB (maMYB)"]
["AT5G45480","Chr5:18425836-18432397","cs","ls","OK",7.39816,1.87699,-1.97874,3.2645,0.00109657,0.0336444,"yes","GO:0010167 GO:0015706 GO:0006569 GO:0009684 GO:0003674 GO:0005886","AT5G45480.1","Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45540.1); Has 1371 Blast hits to 876 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1371; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G45500","Chr5:18432457-18435469","cs","ls","OK",23.0441,0.923617,-4.64096,7.78217,{"v":7.11e-15,"d":"7.11E-15"},{"v":6.72e-12,"d":"6.72E-12"},"yes","GO:0045087 GO:0009617 GO:0003674 GO:0005886","AT5G45500.1","RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G45510","Chr5:18444656-18449446","cs","ls","OK",47.6379,5.02399,-3.24521,9.41624,0,0,"yes","GO:0006952 GO:0005829 GO:0005886","AT5G45510.1","Leucine-rich repeat (LRR) family protein; INVOLVED IN: defense response; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G19050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]
["AT5G45840","Chr5:18593916-18597995","cs","ls","OK",3.06091,0.518676,-2.56106,3.67444,0.000238375,0.0105625,"yes","GO:0006468 GO:0004674 GO:0004713 GO:0007169 GO:0005524 GO:0009507","AT5G45840.2","Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G18640.1).","protein_coding"]
["AT5G46220","Chr5:18738748-18742011","cs","ls","OK",3.90393,0.68146,-2.51823,3.34202,0.000831723,0.0279366,"yes","GO:0016021 GO:0006672 GO:0016757 GO:0009507","AT5G46220.1","Protein of unknown function (DUF616); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT4G38500.1); Has 226 Blast hits to 226 proteins in 19 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).","protein_coding"]
["AT5G46490","Chr5:18850775-18853843","cs","ls","OK",8.30636,0.833578,-3.31683,4.50324,{"v":6.69e-06,"d":"6.69E-06"},0.000587841,"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT5G46490.2","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G31540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).","protein_coding"]
["AT5G46510","Chr5:18860450-18867013","cs","ls","OK",7.49446,0.018145,-8.69011,7.5989,{"v":3e-14,"d":"3.00E-14"},{"v":2.59e-11,"d":"2.59E-11"},"yes","GO:0006952 GO:0007165 GO:0017111 GO:0043531 GO:0005622","AT5G46510.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G46520","Chr5:18867766-18872415","cs","ls","OK",3.56916,0.538548,-2.72844,4.53129,{"v":5.86e-06,"d":"5.86E-06"},0.000528988,"yes","GO:0006952 GO:0005634 GO:0005829 GO:0005515 GO:0007165","AT5G46520.1","Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46510.1); Has 17530 Blast hits to 12991 proteins in 492 species: Archae - 6; Bacteria - 943; Metazoa - 980; Fungi - 57; Plants - 15109; Viruses - 15; Other Eukaryotes - 420 (source: NCBI BLink).","protein_coding"]
["AT5G46800","Chr5:18988630-18990772","cs","ls","OK",54.7896,21.8768,-1.3245,3.91378,{"v":9.09e-05,"d":"9.09E-05"},0.00495525,"yes","GO:0005215 GO:0015822 GO:0005743 GO:0006839 GO:0055085 GO:0009507","AT5G46800.1","Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein","protein_coding","A BOUT DE SOUFFLE (BOU)","A BOUT DE SOUFFLE (BOU)"]
["AT5G47810","Chr5:19356355-19358125","cs","ls","OK",3.39679,0.430473,-2.98018,3.37075,0.000749643,0.0256771,"yes","GO:0003872 GO:0005945 GO:0006096 GO:0005524","AT5G47810.1","phosphofructokinase 2 (PFK2); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 3 (TAIR:AT4G26270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding","PHOSPHOFRUCTOKINASE 2 (PFK2)","PHOSPHOFRUCTOKINASE 2 (PFK2)"]
["AT5G48530","Chr5:19666836-19668830","cs","ls","OK",5.85482,0.785045,-2.89878,3.61443,0.000301006,0.0124745,"yes","GO:0008150 GO:0003674 GO:0005739","AT5G48530.1","unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07440.1); Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G48620","Chr5:19716475-19721452","cs","ls","OK",18.9688,6.31736,-1.58623,4.7873,{"v":1.69e-06,"d":"1.69E-06"},0.000176608,"yes","GO:0006952 GO:0043531 GO:0005886","AT5G48620.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G49360","Chr5:20011878-20016742","cs","ls","OK",30.6102,13.5663,-1.17398,3.6437,0.000268743,0.0116992,"yes","GO:0048046 GO:0005975 GO:0010214 GO:0046556 GO:0009505","AT5G49360.1","Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.","protein_coding","BETA-XYLOSIDASE 1 (BXL1)","BETA-XYLOSIDASE 1 (ATBXL1)"]
["AT5G50200","Chr5:20436179-20437726","cs","ls","OK",20.3809,4.155,-2.2943,3.77037,0.000163007,0.0079701,"yes","GO:0010167 GO:0006888 GO:0015706 GO:0006612 GO:0006862 GO:0009611 GO:0009627 GO:0015112 GO:0006944 GO:0015802 GO:0015696 GO:0043090 GO:0005886 GO:0034976 GO:0043069 GO:0043269 GO:0010363","AT5G50200.3","Wound-responsive gene 3 (WR3). Encodes a high-affinity nitrate transporter. Up-regulated by nitrate. Involved in jasmonic acid-independent wound signal transduction.","protein_coding","WOUND-RESPONSIVE 3 (WR3)","WOUND-RESPONSIVE 3 (WR3)"]
["AT5G51460","Chr5:20900976-20904539","cs","ls","OK",20.2887,8.45061,-1.26355,3.28191,0.00103106,0.0323344,"yes","GO:0005634 GO:0005992 GO:0004805","AT5G51460.3","homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases","protein_coding","(ATTPPA)","TREHALOSE-6-PHOSPHATE PHOSPHATASE A (TPPA)"]
["AT5G51730","Chr5:21011417-21013657","cs","ls","OK",5.53594,0.350332,-3.98204,4.30176,{"v":1.69e-05,"d":"1.69E-05"},0.00126452,"yes","GO:0008150 GO:0005634 GO:0003674","AT5G51730.1","RNA-binding (RRM/RBD/RNP motifs) family protein; BEST Arabidopsis thaliana protein match is: nucleolin like 2 (TAIR:AT3G18610.1); Has 148 Blast hits to 118 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).","protein_coding"]
["AT5G52060","Chr5:21152213-21154244","cs","ls","OK",63.821,29.9211,-1.09287,3.50703,0.000453133,0.0171991,"yes","GO:0048767 GO:0009750 GO:0051087 GO:0005739 GO:0006833 GO:0030003 GO:0009651 GO:0070838","AT5G52060.1","A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.","protein_coding","BCL-2-ASSOCIATED ATHANOGENE 1 (BAG1)","BCL-2-ASSOCIATED ATHANOGENE 1 (ATBAG1)"]
["AT5G52882","Chr5:21433878-21438659","cs","ls","OK",31.2156,13.1687,-1.24515,3.93633,{"v":8.27e-05,"d":"8.27E-05"},0.00462071,"yes","GO:0017111 GO:0005524 GO:0005886","AT5G52882.1","P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 40812 Blast hits to 38433 proteins in 3247 species: Archae - 1565; Bacteria - 18648; Metazoa - 4821; Fungi - 3639; Plants - 3257; Viruses - 39; Other Eukaryotes - 8843 (source: NCBI BLink).","protein_coding"]
["AT5G53970","Chr5:21910532-21912777","cs","ls","OK",8.88089,2.48162,-1.83942,3.43959,0.000582595,0.0209893,"yes","GO:0005737 GO:0004838 GO:0010189","AT5G53970.1","encodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatment","protein_coding","TYROSINE AMINOTRANSFERASE 7 (TAT7)","TYROSINE AMINOTRANSFERASE 7 (TAT7)"]
["AT5G54060","Chr5:21936878-21938369","cs","ls","OK",5.69998,0.986848,-2.53006,3.53156,0.000413118,0.015986,"yes","GO:0009718 GO:0009744 GO:0035252 GO:0006499 GO:0010224 GO:0009507","AT5G54060.1","Encodes a anthocyanin 3-O-glucoside: 2\"-O-xylosyl-transferase involved in anthocyanin modification that converts cyanidin 3-O-glucoside to cyanidin 3-O-xylosyl(1->2)glucoside. Its preferred sugar donor is UDP-xylose.","protein_coding","UDP-GLUCOSE:FLAVONOID 3-O-GLUCOSYLTRANSFERASE (UF3GT)","UDP-GLUCOSE:FLAVONOID 3-O-GLUCOSYLTRANSFERASE (UF3GT)"]
["AT5G54160","Chr5:21981995-21984363","cs","ls","OK",113.117,45.5908,-1.311,4.25749,{"v":2.07e-05,"d":"2.07E-05"},0.00146191,"yes","GO:0030755 GO:0016126 GO:0030744 GO:0051555 GO:0009809 GO:0006598 GO:0009805 GO:0033799 GO:0005829 GO:0009963 GO:0009611 GO:0047763 GO:0005634 GO:0009506","AT5G54160.1","A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3?-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3?-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase","protein_coding","O-METHYLTRANSFERASE 1 (OMT1)","O-METHYLTRANSFERASE 1 (ATOMT1)"]
["AT5G54610","Chr5:22184778-22186525","cs","ls","OK",7.74137,1.95853,-1.98282,3.13157,0.00173874,0.0475422,"yes","GO:0050832 GO:0010310 GO:0010363 GO:0009862 GO:0006612 GO:0000165 GO:0009867 GO:0031348 GO:0009697 GO:0042742 GO:0005886 GO:0043069","AT5G54610.1","Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.","protein_coding","ANKYRIN (ANK)","BIAN DA 2 (BECOMING BIG IN CHINESE) (BDA1)"]
["AT5G55790","Chr5:22580669-22581335","cs","ls","OK",12.2374,0.208784,-5.87315,4.9278,{"v":8.32e-07,"d":"8.32E-07"},{"v":9.65e-05,"d":"9.65E-05"},"yes","GO:0010048 GO:0003674 GO:0005739","AT5G55790.1","unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45163.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).","protein_coding"]
["AT5G56550","Chr5:22894501-22896653","cs","ls","OK",43.404,11.8679,-1.87076,4.74043,{"v":2.13e-06,"d":"2.13E-06"},0.000215995,"yes","GO:0016607 GO:0046686 GO:0003674 GO:0006979","AT5G56550.1","Encodes OXIDATIVE STRESS 3 (OXS3)， involved in tolerance to heavy metals and oxidative stress.","protein_coding","OXIDATIVE STRESS 3 (OXS3)","OXIDATIVE STRESS 3 (ATOXS3)"]
["AT5G56910","Chr5:23022921-23024205","cs","ls","OK",9.66694,0.743299,-3.70104,4.47049,{"v":7.8e-06,"d":"7.80E-06"},0.000667736,"yes","GO:0005634 GO:0008150","AT5G56910.1","Proteinase inhibitor I25, cystatin, conserved region; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381), Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT5G56920.1); Has 58 Blast hits to 58 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).","protein_coding"]
["AT5G57220","Chr5:23187839-23189857","cs","ls","OK",2.49974,0.318543,-2.97222,3.28508,0.00101953,0.0320739,"yes","GO:0019825 GO:0052544 GO:0010200 GO:0020037 GO:0009682 GO:0016705 GO:0009759 GO:0009723 GO:0050832 GO:0071456 GO:0002213 GO:0009055","AT5G57220.1","member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi.","protein_coding","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 2\" (CYP81F2)","\"CYTOCHROME P450, FAMILY 81, SUBFAMILY F, POLYPEPTIDE 2\" (CYP81F2)"]
["AT5G57560","Chr5:23307129-23308282","cs","ls","OK",42.7355,11.1751,-1.93515,4.88736,{"v":1.02e-06,"d":"1.02E-06"},0.000113971,"yes","GO:0009733 GO:0009664 GO:0006073 GO:0010583 GO:0005618 GO:0009741 GO:0009611 GO:0009612 GO:0016762 GO:0048046 GO:0010200 GO:0005794 GO:0004553 GO:0009409 GO:0009408 GO:0009507","AT5G57560.1","Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli","protein_coding","TOUCH 4 (TCH4)","XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 22 (XTH22)"]
["AT5G60900","Chr5:24498466-24501494","cs","ls","OK",4.41077,0.528193,-3.06189,4.21724,{"v":2.47e-05,"d":"2.47E-05"},0.00166988,"yes","GO:0004674 GO:0006468 GO:0010310 GO:0006612 GO:0010363 GO:0006355 GO:0009862 GO:0009617 GO:0000165 GO:0030246 GO:0031348 GO:0009867 GO:0004713 GO:0005886 GO:0035304 GO:0005524","AT5G60900.1","Encodes a receptor-like protein kinase.","protein_coding","RECEPTOR-LIKE PROTEIN KINASE 1 (RLK1)","RECEPTOR-LIKE PROTEIN KINASE 1 (RLK1)"]
["AT5G61600","Chr5:24766385-24767430","cs","ls","OK",22.7456,8.33024,-1.44916,3.2607,0.00111138,0.0339939,"yes","GO:0010200 GO:0003700 GO:0005634 GO:0009611 GO:0009612 GO:0050832 GO:0045893 GO:0005515 GO:0009693","AT5G61600.1","encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.","protein_coding","ETHYLENE RESPONSE FACTOR 104 (ERF104)","ETHYLENE RESPONSE FACTOR 104 (ERF104)"]
["AT5G63020","Chr5:25281713-25286002","cs","ls","OK",15.6564,0.405242,-5.27183,5.16213,{"v":2.44e-07,"d":"2.44E-07"},{"v":3.41e-05,"d":"3.41E-05"},"yes","GO:0006952 GO:0005634 GO:0006499 GO:0043531","AT5G63020.1","Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 14258 Blast hits to 13662 proteins in 567 species: Archae - 8; Bacteria - 542; Metazoa - 1192; Fungi - 130; Plants - 12234; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).","protein_coding"]
["AT5G65660","Chr5:26245248-26246379","cs","ls","OK",90.6763,36.5577,-1.31055,3.72834,0.000192742,0.00906663,"yes","GO:0008150 GO:0005634 GO:0003674 GO:0005886","AT5G65660.1","hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).","protein_coding"]