{"text_format":"3","workbook":"xlsx","n_sheets":5,"sheets":["Info Sheet","all-C_100bp","all-C_500bp","CHH_100bp","CHH_500bp"],"read":"whole","date_system":"1900"}

{"sheet":"Info Sheet","index":0,"n_rows":34,"n_cols":8,"rows_kept":34,"merged":[[1,1,3,14],[5,1,14,3],[5,4,14,14],[16,1,33,3],[16,4,16,6],[16,7,16,14],[17,4,17,6],[17,7,17,14],[18,4,18,6],[18,7,18,14],[19,4,20,6],[19,7,20,14],[21,4,22,6],[21,7,22,14],[23,4,23,6],[23,7,23,14],[24,4,26,5],[24,7,24,14],[25,7,25,14],[26,7,26,14],[27,4,28,6],[27,7,28,14],[29,4,29,6],[29,7,29,14],[30,4,30,6],[30,7,30,14],[31,4,31,6],[31,7,31,14],[32,4,32,6],[32,7,32,14],[33,4,33,6],[33,7,33,14]]}
[]
[null,"Supplementary Data 17 | Consensus DMRs."]
[]
[]
[]
[null,"Background Information ",null,null,"Whole genome bisulfite sequencing was conducted on leaf material harvested from 5-week-old plants treated at 2-weeks-old with water or 1 mM jasmonic acid (JA). Three replicates were sequenced per seedling treatment. Differentially methylated regions (DMRs) were identified in comparisons between the 3 water replicates and individual JA replicates (1JA_vs_3W). This DMR calling process was repeated for each of the 4 sequence context groups: all-C (all cytosine contexts), CG, CHG and CHH. This data set lists consensus DMRs which are regions containing 3 DMRs, one from each of the three 1JA_vs_3W comparisons (JA.1, JA.2 and JA.3). Consensus DMRs were only identified at the all-C and CHH sequence contexts. During the consensus DMR identification process, either 100 bp or 500 bp gap was allowed between DMRs for them still to be classed as overlapping (see Methods for more information on the consensus DMR identification pipeline). Also displayed in this data set is information on the genes which have their promoters (1 kb upstream of TSS) overlapped by one or more consensus DMRs. "]
{"$rows_empty":10}
[null,"Column Information for all Sheets",null,null,"Column Header",null,null,"Description"]
[{"$nulls":4},"Chr",null,null,"Chromosome"]
[{"$nulls":4},"Consensus DMR No.",null,null,"The consensus DMR number."]
[{"$nulls":4},"start_Consensus_DMR",null,null,"Start coordinate of consensus DMR. Equates to the lowest coordinate from across the 3 DMRs which contributed to the consensus DMR."]
[]
[{"$nulls":4},"end_Consensus_DMR",null,null,"End coordinate. Equates to the highest coordinate from across the 3 DMRs which contributed to the consensus DMR."]
[]
[{"$nulls":4},"width_Consensus_DMR",null,null,"Width of consensus DMR."]
[{"$nulls":4},"DMR_# ",null,"start_","Start coordinate for DMR from 1JA_vs_3W comparison number JA.#."]
[{"$nulls":6},"end_","End coordinate for DMR from 1JA_vs_3W comparison number JA.#."]
[{"$nulls":6},"width_","Width of DMR from 1JA_vs_3W comparison number JA.#."]
[{"$nulls":4},"Gene Model",null,null,"TAIR10 identifier for gene model which is overlapped by consensus DMR in its upstream 1 kb promoter."]
[]
[{"$nulls":4},"Gene Model Type",null,null,"The product encoded for by the gene."]
[{"$nulls":4},"Gene Symbol",null,null,"Abbreviated version of gene name."]
[{"$nulls":4},"Gene Short Description",null,null,"Brief description of the function of the genes product."]
[{"$nulls":4},"Overlaps_TE",null,null,"If yes, overlaps TE in the TAIR10 genome annotation."]
[{"$nulls":4},"Overlaps_ATREP2_TE",null,null,"If yes, consensus DMR overlaps an TE from the ATREP2 TE family."]

{"sheet":"all-C_100bp","index":1,"n_rows":3,"n_cols":20,"rows_kept":3}
["Chr","Consensus_DMR_No.","start_Consensus_DMR","end_Consensus_DMR","width_Consensus_DMR","start_DMR_1","end_DMR_1","width_DMR_1","start_DMR_2","end_DMR_2","width_DMR_2","start_DMR_3","end_DMR_3","width_DMR_3","Gene_Model","Gene_Model_Type","Gene_Symbol","Gene_Short_Description","Overlaps_TE","Overlaps_ATREP2_TE"]
["1",1,26510948,26511101,154,26511061,26511101,41,26510948,26510978,31,26511060,26511094,35,{"$nulls":4},"Yes","Yes"]
["1",2,26511060,26511101,42,26511061,26511101,41,26511063,26511101,39,26511060,26511094,35,{"$nulls":4},"Yes","Yes"]

{"sheet":"all-C_500bp","index":2,"n_rows":3,"n_cols":20,"rows_kept":3}
["Chr","Consensus_DMR_No.","start_Consensus_DMR","end_Consensus_DMR","width_Consensus_DMR","start_DMR_1","end_DMR_1","width_DMR_1","start_DMR_2","end_DMR_2","width_DMR_2","start_DMR_3","end_DMR_3","width_DMR_3","Gene_Model","Gene_Model_Type","Gene_Symbol","Gene_Short_Description","Overlaps_TE","Overlaps_ATREP2_TE"]
["1",1,26510948,26511101,154,26511061,26511101,41,26510948,26510978,31,26511060,26511094,35,{"$nulls":4},"Yes","Yes"]
["1",2,26511060,26511101,42,26511061,26511101,41,26511063,26511101,39,26511060,26511094,35,{"$nulls":4},"Yes","Yes"]

{"sheet":"CHH_100bp","index":3,"n_rows":12,"n_cols":20,"rows_kept":12}
["Chr","Consensus_DMR_No.","start_Consensus_DMR","end_Consensus_DMR","width_Consensus_DMR","start_DMR_1","end_DMR_1","width_DMR_1","start_DMR_2","end_DMR_2","width_DMR_2","start_DMR_3","end_DMR_3","width_DMR_3","Gene_Model","Gene_Model_Type","Gene_Symbol","Gene_Short_Description","Overlaps_TE","Overlaps_ATREP2_TE"]
["1",1,4773152,4773198,47,4773152,4773186,35,4773152,4773198,47,4773152,4773198,47,"AT1G05037.1","Long noncoding RNA"]
["1",1,4773152,4773198,47,4773152,4773186,35,4773152,4773198,47,4773152,4773198,47,"AT1G13950.1","Protein coding","ELF5A-1","eukaryotic translation initiation factor 5A"]
["1",2,28398463,28398526,64,28398489,28398514,26,28398463,28398526,64,28398489,28398514,26,{"$nulls":4},"Yes"]
["2",3,241687,241890,204,241821,241890,70,241687,241724,38,241829,241858,30,{"$nulls":4},"Yes"]
["2",4,9595737,9595887,151,9595840,9595887,48,9595737,9595763,27,9595848,9595886,39,"AT2G22600.1","Protein coding",null,"RNA-binding KH domain-containing protein","Yes"]
["2",5,9595840,9595887,48,9595840,9595887,48,9595841,9595887,47,9595848,9595886,39,"AT2G22600.1","Protein coding",null,"RNA-binding KH domain-containing protein"]
["3",6,2648456,2648505,50,2648456,2648503,48,2648456,2648505,50,2648456,2648505,50,{"$nulls":4},"Yes"]
["3",7,16556098,16556138,41,16556110,16556138,29,16556098,16556138,41,16556110,16556138,29,"AT3G07075.1","Long noncoding RNA",null,null,"Yes"]
["3",8,16682096,16682171,76,16682138,16682171,34,16682096,16682136,41,16682096,16682129,34,"AT3G45470.1","Protein coding",null,"IBR domain containing protein"]
["4",9,6756868,6756942,75,6756868,6756942,75,6756881,6756908,28,6756881,6756936,56,"AT4G11060.1","Protein coding","MTSSB","mitochondrially targeted single-stranded DNA binding protein","Yes"]
["4",10,9981338,9981483,146,9981338,9981388,51,9981426,9981483,58,9981338,9981388,51,"AT4G17980.2","Protein coding","NAC071","NAC domain containing protein 71","Yes"]

{"sheet":"CHH_500bp","index":4,"n_rows":34,"n_cols":20,"rows_kept":34}
["Chr","Consensus_DMR_No.","start_Consensus_DMR","end_Consensus_DMR","width_Consensus_DMR","start_DMR_1","end_DMR_1","width_DMR_1","start_DMR_2","end_DMR_2","width_DMR_2","start_DMR_3","end_DMR_3","width_DMR_3","Gene_Model","Gene_Model_Type","Gene_Symbol","Gene_Short_Description","Overlaps_TE","Overlaps_ATREP2_TE"]
["1",1,2587944,2588314,371,2588128,2588167,40,2587944,2587969,26,2588281,2588314,34,"AT1G08230.2","Protein coding","GAT1","GABA Transporter","Yes","Yes"]
["1",1,2587944,2588314,371,2588128,2588167,40,2587944,2587969,26,2588281,2588314,34,"AT1G08230.4","Protein coding","GAT1","GABA Transporter","Yes","Yes"]
["1",1,2587944,2588314,371,2588128,2588167,40,2587944,2587969,26,2588281,2588314,34,"AT1G08230.5","Protein coding","GAT1","GABA Transporter","Yes","Yes"]
["1",1,2587944,2588314,371,2588128,2588167,40,2587944,2587969,26,2588281,2588314,34,"AT1G08260.2","Protein coding","TIL1","DNA polymerase epsilon catalytic subunit","Yes","Yes"]
["1",1,2587944,2588314,371,2588128,2588167,40,2587944,2587969,26,2588281,2588314,34,"AT1G08260.1","Protein coding","TIL1","DNA polymerase epsilon catalytic subunit","Yes","Yes"]
["1",1,2587944,2588314,371,2588128,2588167,40,2587944,2587969,26,2588281,2588314,34,"AT1G08240.1","pre Trna",null,"pre-tRNA tRNA-Gly","Yes","Yes"]
["1",2,4773152,4773198,47,4773152,4773186,35,4773152,4773198,47,4773152,4773198,47,"AT1G13950.1","Protein coding","ELF5A-1","eukaryotic translation initiation factor 5A"]
["1",2,4773152,4773198,47,4773152,4773186,35,4773152,4773198,47,4773152,4773198,47,"AT1G05037.1","Long noncoding RNA"]
["1",3,10867271,10867680,410,10867284,10867318,35,10867643,10867680,38,10867271,10867324,54,"AT1G30650.1","Protein coding","WRKY14","WRKY DNA-binding protein 14","Yes"]
["1",4,28398463,28398526,64,28398489,28398514,26,28398463,28398526,64,28398489,28398514,26,{"$nulls":4},"Yes"]
["1",5,29319248,29319919,672,29319248,29319289,42,29319889,29319919,31,29319705,29319741,37,{"$nulls":4},"Yes"]
["2",6,241687,241890,204,241821,241890,70,241687,241724,38,241829,241858,30,{"$nulls":4},"Yes"]
["2",7,2985094,2985301,208,2985094,2985156,63,2985123,2985158,36,2985271,2985301,31,{"$nulls":4},"Yes"]
["2",8,5780319,5780522,204,5780319,5780358,40,5780328,5780358,31,5780496,5780522,27,{"$nulls":4},"Yes"]
["2",9,9595737,9595887,151,9595840,9595887,48,9595737,9595763,27,9595848,9595886,39,"AT2G22600.1","Protein coding",null,"RNA-binding KH domain-containing protein","Yes"]
["2",10,9595840,9595887,48,9595840,9595887,48,9595841,9595887,47,9595848,9595886,39,"AT2G22600.1","Protein coding",null,"RNA-binding KH domain-containing protein"]
["3",11,2648456,2648505,50,2648456,2648503,48,2648456,2648505,50,2648456,2648505,50,{"$nulls":4},"Yes"]
["3",12,5929658,5930105,448,5929658,5929688,31,5930075,5930105,31,5930041,5930105,65,"AT3G03465.1","Long noncoding RNA",null,null,"Yes"]
["3",13,5929658,5930105,448,5929658,5929688,31,5930075,5930105,31,5929719,5929749,31,"AT3G03465.1","Long noncoding RNA",null,null,"Yes"]
["3",14,15666866,15667330,465,15666927,15666955,29,15666866,15666898,33,15667302,15667330,29,"AT3G43810.3","Protein coding","CAM7","calmodulin 7","Yes"]
["3",14,15666866,15667330,465,15666927,15666955,29,15666866,15666898,33,15667302,15667330,29,"AT3G43810.2","Protein coding","CAM7","calmodulin 7","Yes"]
["3",14,15666866,15667330,465,15666927,15666955,29,15666866,15666898,33,15667302,15667330,29,"AT3G43810.1","Protein coding","CAM7","calmodulin 7","Yes"]
["3",15,16556098,16556138,41,16556110,16556138,29,16556098,16556138,41,16556110,16556138,29,"AT3G07075.1","Long noncoding RNA",null,null,"Yes"]
["3",16,16556098,16556581,484,16556527,16556581,55,16556098,16556138,41,16556527,16556581,55,"AT3G07075.1","Long noncoding RNA",null,null,"Yes"]
["3",17,16556098,16556581,484,16556110,16556138,29,16556098,16556138,41,16556527,16556581,55,"AT3G07075.1","Long noncoding RNA",null,null,"Yes"]
["3",18,16556098,16556581,484,16556527,16556581,55,16556098,16556138,41,16556110,16556138,29,"AT3G07075.1","Long noncoding RNA",null,null,"Yes"]
["3",19,16682096,16682171,76,16682138,16682171,34,16682096,16682136,41,16682096,16682129,34,"AT3G45470.1","Protein coding",null,"IBR domain containing protein"]
["4",20,6756868,6756942,75,6756868,6756942,75,6756881,6756908,28,6756881,6756936,56,"AT4G11060.1","Protein coding","MTSSB","mitochondrially targeted single-stranded DNA binding protein","Yes"]
["4",21,9981338,9981483,146,9981338,9981388,51,9981426,9981483,58,9981338,9981388,51,"AT4G17980.2","Protein coding","NAC071","NAC domain containing protein 71","Yes"]
["5",22,5801396,5801747,352,5801407,5801432,26,5801698,5801747,50,5801396,5801462,67,"AT5G17600.1","Protein coding","ATL52","RING/U-box superfamily protein","Yes"]
["5",23,5801396,5801849,454,5801407,5801432,26,5801824,5801849,26,5801396,5801462,67,"AT5G17600.1","Protein coding","ATL52","RING/U-box superfamily protein","Yes"]
["5",24,5801407,5801863,457,5801407,5801432,26,5801698,5801747,50,5801814,5801863,50,"AT5G17600.1","Protein coding","ATL52","RING/U-box superfamily protein","Yes"]
["5",25,5801407,5801863,457,5801407,5801432,26,5801824,5801849,26,5801814,5801863,50,"AT5G17600.1","Protein coding","ATL52","RING/U-box superfamily protein","Yes"]