{"text_format":"3","workbook":"xlsx","n_sheets":10,"sheets":["TITLE PAGE","Additional Table 1","Additional Table 2","Additional Table 3","(1) Expressed genes","(2) DEGs","(3) GO annotation","(4) AgriGo Up","(5) AgriGo Down","Additional Figures"],"not_rendered":{"images":2},"read":"whole","date_system":"1900"}

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[{"$nulls":4},"Transcriptomic and genomic analysis highlights the basis of ZYMV tolerance in zucchini"]
[{"$nulls":4},"Amoroso CG1, Andolfo G1, Capuozzo C1, Di Donato A1, Martinez C2, Tomassoli L3, Ercolano MR*"]
[{"$nulls":4},"1 Department of Agricultural Science – University of Naples “Federico II” – Portici (NA)"]
[{"$nulls":4},"2 Department of Biology and Geology, Research Centers CIAIMBITAL and CeiA3, University of Almería, 04120 Almería, Spain"]
[{"$nulls":4}," 3 Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria, Research Centre of Plant Control and Certification, Rome, Italy"]

{"sheet":"Additional Table 1","index":1,"n_rows":31,"n_cols":13,"rows_kept":31,"merged":[[6,0,7,12],[8,0,9,0],[8,3,8,4],[8,5,9,5],[8,6,8,7],[8,8,9,8],[8,9,8,12],[30,0,30,12]]}
["Transcriptomic and genomic analysis highlights the basis of ZYMV tolerance in zucchini"]
["Amoroso CG1, Andolfo G1, Capuozzo C1, Di Donato A1, Martinez C2, Tomassoli L3, Ercolano MR*"]
["1 Department of Agricultural Science – University of Naples “Federico II” – Portici (NA)"]
["2 Department of Biology and Geology, Research Centers CIAIMBITAL and CeiA3, University of Almería, 04120 Almería, Spain"]
[" 3 Consiglio per la Ricerca in Agricoltura e l'Analisi dell'Economia Agraria, Research Centre of Plant Control and Certification, Rome, Italy"]
[]
["Table S1. Number of short variants (SNV and InDel) identified in TF and 381e. For each C. pepo linkage group (LG) the length, percentage of expressed genes (EGs) and number of normalised variants are reported."]
[]
["Linkage group (CPv4.1)","LG size","Gene","Expressed gene (%)A",null,null,"Number of Variants (%)B",null,null,"Normalised variants"]
[null,"(Mb)","(n.)","TF","381e",null,"TF","381e",null,"TFC","381eC","TFD","381eD"]
["LG01","21,2",3177,"1898 (59,7)","1791 (56,4)",null,"5935 (9,4)","15755 (19,4)",null,"279,9",743,"3,1","8,7"]
["LG02","14,4",2162,"1283 (59,3)","1229 (56,8)",null,"4844 (7,7)","5188 (6,4)",null,"337,3","361,2","3,7","4,2"]
["LG03","13,4",2255,"1284 (56,9)","1229 (54,5)",null,"5556 (8,8)","5668 (7)",null,"415,4","423,8","4,3","4,6"]
["LG04","12,7",2036,"1209 (59,4)","1166 (57,3)",null,"2787 (4,4)","2906 (3,6)",null,"219,4","228,7","2,3","2,4"]
["LG05","10,9",1884,"1119 (59,4)","1073 (56,9)",null,"2602 (4,1)","2494 (3,1)",null,"239,6","229,7","2,3","2,3"]
["LG06","10,7",1305,"741 (56,8)","721 (55,2)",null,"3613 (5,7)","3722 (4,6)",null,"338,7","348,9","4,8","5,1"]
["LG07","9,7",1393,"813 (58,4)","787 (56,5)",null,"3250 (5,2)","3415 (4,2)",null,"333,0","349,9","3,9","4,3"]
["LG08",10,1683,"1016 (60,4)","970 (57,6)",null,"2023 (3,2)","7959 (9,8)",null,"201,2","791,4","1,9","8,2"]
["LG09","9,9",1421,"835 (58,8)","791 (55,7)",null,"1660 (2,6)","1675 (2,1)",null,"167,5","169,0","1,9","2,1"]
["LG10","9,8",1550,"882 (56,9)","854 (55,1)",null,"2834 (4,5)","2985 (3,7)",null,"288,4","303,7","3,2","3,4"]
["LG11","9,8",1399,"803 (57,4)","782 (55,9)",null,"3997 (6,3)","4184 (5,2)",null,"406,9","425,9","4,9","5,3"]
["LG12",9,1445,"843 (58,3)","813 (56,3)",null,"3852 (6,1)","3987 (4,9)",null,"427,5","442,5","4,5","4,9"]
["LG13","8,3",1441,"858 (59,5)","826 (57,3)",null,"4632 (7,3)","4803 (5,9)",null,"557,7","578,2","5,3","5,8"]
["LG14","8,9",1299,"775 (59,66)","735 (56,58)",null,"3032 (4,8)","3154 (3,9)",null,"338,7","352,3","3,9","4,2"]
["LG15","8,8",1113,"635 (57,05)","617 (55,43)",null,"1813 (2,9)","1901 (2,3)",null,"205,7","215,7","2,8",3]
["LG16","8,0",1181,"669 (56,64)","644 (54,53)",null,"2563 (4,1)","2688 (3,3)",null,"316,4","331,9","3,8","4,1"]
["LG17","7,9",1377,"823 (59,76)","780 (56,64)",null,"1864 (3)","1970 (2,4)",null,"236,2","249,7","2,2","2,5"]
["LG18","8,3",1197,"711 (59,39)","688 (57,47)",null,"2172 (3,4)","2311 (2,8)",null,"260,8","277,5",3,"3,3"]
["LG19","8,2",1463,"823 (56,25)","788 (53,86)",null,"3020 (4,8)","3245 (4)",null,"366,5","393,8","3,6","4,1"]
["LG20","8,1",1132,"630 (55,65)","594 (52,47)",null,"1044 (1,7)","1094 (1,3)",null,"128,7","134,8","1,6","1,8"]
["A) Percentage of expressed loci for LG. B) Percentage of total short variants mapped on the genome. Average numbers of short variants for C) 1Mb and D) expressed locus."]

{"sheet":"Additional Table 2","index":2,"n_rows":11,"n_cols":14,"rows_kept":11,"merged":[[0,0,1,13],[2,4,2,5],[2,6,3,6],[2,7,2,8],[2,9,3,9],[2,10,2,13],[10,0,11,13]]}
["Table S2. Number of short variants (SNV and InDel) identified in TF and 381e. For each C. pepo linkage group (LG) the length, percentage of expressed genes (EGs) and number of normalised variants are reported."]
[]
["Linkage group","Scaffold","LG size","Gene","Expressed gene (%)A",null,null,"Number of Variants (%)B",null,null,"Normalised variants"]
["(CPv4.1)","(CPv3.2)","(Mb)","(n.)","TF","381e",null,"TF","381e",null,"TFC","381eC","TFD","381eD"]
["LG01",105,"0,5",43,"22 (51,1)","21 (48,8)",null,"83 (1,4)","423 (2,7)",null,"81,7","416,5","3,8","20,1"]
["LG01",32,"2,2",360,"230 (63,8)","198 (55)",null,"453 (7,6)","6230 (39,5)",null,"101,1","1389,8",2,"31,5"]
["LG01",24,"2,5",454,"289 (63,6)","276 (60,8)",null,"492 (8,2)","4053 (25,7)",null,"97,4","802,3","1,7","14,7"]
["LG08",3,"4,9",827,"488 (59)","467 (56,5)",null,"1056 (17,8)","4776 (30,3)",null,"108,3","489,8","2,2","10,2"]
["LG08",89,"0,6",43,"22 (51,1)","22 (51,1)",null,"75 (1,3)","452 (2,9)",null,"58,4","351,9","3,4","20,5"]
["LG08",8,"3,9",720,"451 (62,6)","428 (59,4)",null,"785 (12,2)","2626 (16,7)",null,"98,2","328,6","1,7","6,1"]
["A) Percentage of expressed loci for LG. B) Percentage of total short variants mapped for LG. Average numbers of short variants for C) 0,5Mb and D) expressed locus."]

{"sheet":"Additional Table 3","index":3,"n_rows":18,"n_cols":7,"rows_kept":18,"merged":[[0,0,2,6],[3,4,4,4],[3,5,4,6],[5,0,6,0],[5,1,6,1],[5,3,6,3],[5,4,6,4],[5,5,6,5],[5,6,6,6],[7,0,8,0],[7,1,8,1],[7,3,8,3],[7,4,8,4],[7,5,8,5],[7,6,8,6],[9,0,10,0],[9,1,10,1],[9,3,10,3],[9,4,10,4],[9,5,10,5],[9,6,10,6],[11,0,12,0],[11,1,12,1],[11,3,12,3],[11,4,12,4],[11,5,12,5],[11,6,12,6],[13,0,14,0],[13,1,14,1],[13,3,14,3],[13,4,14,4],[13,5,14,5],[13,6,14,6],[15,0,18,0],[15,1,18,1],[15,2,16,2],[15,3,18,3],[15,4,18,4],[15,5,18,5],[15,6,18,6],[17,2,18,2]]}
["Table S3. Validation of 6 polymorphic loci located on putative genomic regions introgressed from ‘Menina’. For each amplicon, locus name, primer and polymorphism information are reported."]
[]
[]
["Marker ID","Locus name","Primer sequences","Amplicon size","Validation","Comparison"]
["(CAPS)","(Andolfo et al. 2017)","(5’-3’)","(bp)"]
["LG01SNP1","Cup000105g039903.1","ATCAATCAGGGTCATCCACCTA",651,"Sequencing","TF","381e"]
[null,null,"TCAGCCTTTCCCAAGTTATTCG"]
["LG01SNP5","Cup000032g025434.1","CTACTTATGTCGAGTGCTTGGG",787,"Sequencing","TF","381e"]
[null,null,"TGATTTAAAGGTGTCTGGCTGG"]
["LG01SNP8","Cup000024g021074.1","    GCAGAACCAGATCTTCCTGTTT",790,"Sequencing","TF","381e"]
[null,null,"TCTTGCTAATGGTGGTCGATTG"]
["LG08SNP1","Cup000003g003199.1","GGGGATACTTTATGCATCCAGG",790,"Sequencing","TF","381e"]
[null,null,"CCGGGTAGTCATCAACAACATT"]
["LG08SNP4","Cup000003g002586.1","CTCAGTGGGTCATGTGTCATTT",719,"Sequencing","TF","381e"]
[null,null,"ACCCAGCTTTTAAGGTCAGTTC"]
["LG01SNP5","Cup000032g025434.1","ATGGGTGTGTATTTCGGAACAG",787,"Sequencing","TF","381e"]
[]
[null,null,"TTGATTGAACGAAACTTTGCGC"]

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["Gene_ID","SUSCEPTIBLE ","RESISTANT","SUSCEPTIBLE ",null,null,"RESISTANT",{"$nulls":5},"Expressed genes Overlapped ","Expressed genes",{"$nulls":4},"Private expressed genes"]
[null,"Averange_TF_BRs_12DPI","Averange_381_BRs_12DPI","TF_1^BR_12DPI","TF_2^BR_12DPI","TF_3^BR_12DPI","381_1^BR_12DPI","381_2^BR_12DPI","381_3^BR_12DPI",{"$nulls":3},"Venn intersection ","TF_Expressed Genes","381_Expressed Genes",{"$nulls":3},"381_PRIVATI_Expressed Genes","TF_PRIVATI_Expressed Genes"]
["Cup000001g000011.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup001945g046032.1","Cup000022g019916.A","Cup000035g026922.1",{"$nulls":3},"Cup000035g026922.1","Cup000022g019916.A"]
["Cup000001g000019.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000098g039332.A","Cup000004g004217.A","Cup001945g046032.1",{"$nulls":3},"Cup000033g025951.1","Cup000004g004217.A"]
["Cup000001g000020.1",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000008g008740.A","Cup000388g044429.1","Cup000098g039332.A",{"$nulls":3},"Cup000032g025244.1","Cup000388g044429.1"]
["Cup000001g000033.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000030g024385.1","Cup000972g045444.A","Cup000033g025951.1",{"$nulls":3},"Cup000097g039205.1","Cup000972g045444.A"]
["Cup000001g000046.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000003g002601.1","Cup000024g021169.1","Cup000008g008740.A",{"$nulls":3},"Cup000022g019965.1","Cup000024g021169.1"]
["Cup000001g000099.1",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000107g040034.1","Cup000052g032994.A","Cup000030g024385.1",{"$nulls":3},"Cup000011g011293.1","Cup000052g032994.A"]
["Cup000001g000107.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000251g043793.1","Cup000032g025340.1","Cup000003g002601.1",{"$nulls":3},"Cup000042g029680.A","Cup000032g025340.1"]
["Cup000001g000112.1",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000017g016649.1","Cup002084g046087.1","Cup000107g040034.1",{"$nulls":3},"Cup000012g012234.1","Cup002084g046087.1"]
["Cup000001g000144.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000035g026569.A","Cup000042g029581.A","Cup000251g043793.1",{"$nulls":3},"Cup000012g012756.1","Cup000042g029581.A"]
["Cup000001g000152.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000004g003905.1","Cup000023g020523.1","Cup000017g016649.1",{"$nulls":3},"Cup000020g018796.1","Cup000023g020523.1"]
["Cup000001g000167.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000391g044444.1","Cup000032g025113.A","Cup000035g026569.A",{"$nulls":3},"Cup000021g019445.1","Cup000032g025113.A"]
["Cup000001g000194.1",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000030g024333.1","Cup000006g006492.A","Cup000004g003905.1",{"$nulls":3},"Cup000051g032563.1","Cup000006g006492.A"]
["Cup000001g000207.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000041g029008.1","Cup002888g046392.1","Cup000391g044444.1",{"$nulls":3},"Cup000009g009204.1","Cup002888g046392.1"]
["Cup000001g000223.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000013g013740.1","Cup000032g025158.1","Cup000030g024333.1",{"$nulls":3},"Cup000020g018584.1","Cup000032g025158.1"]
["Cup000001g000272.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000010g010143.1","Cup000032g025481.A","Cup000041g029008.1",{"$nulls":3},"Cup000040g028654.A","Cup000032g025481.A"]
["Cup000001g000284.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000008g008075.1","Cup000032g025256.A","Cup000013g013740.1",{"$nulls":3},"Cup000140g041465.1","Cup000032g025256.A"]
["Cup000001g000298.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000013g013635.1","Cup000032g025420.1","Cup000032g025244.1",{"$nulls":3},"Cup000019g018236.1","Cup000032g025420.1"]
["Cup000001g000302.1",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000062g034815.1","Cup000012g012833.1","Cup000010g010143.1",{"$nulls":3},"Cup000021g019119.1","Cup000012g012833.1"]
["Cup000001g000369.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000117g040543.1","Cup000081g037383.A","Cup000008g008075.1",{"$nulls":3},"Cup000005g005268.1","Cup000081g037383.A"]
["Cup000001g000401.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000003g003349.1","Cup001022g045471.1","Cup000013g013635.1",{"$nulls":3},"Cup000009g009343.1","Cup001022g045471.1"]
["Cup000001g000437.1",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000006g006611.1","Cup000007g007695.A","Cup000097g039205.1",{"$nulls":3},"Cup000064g035191.1","Cup000007g007695.A"]
["Cup000001g000440.1",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000031g024574.1","Cup000014g014520.1","Cup000062g034815.1",{"$nulls":3},"Cup000003g002716.1","Cup000014g014520.1"]
["Cup000001g000447.A",{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"v":0,"d":"0.00"},{"$nulls":3},"Cup000062g034830.1","Cup000022g020133.1","Cup000117g040543.1",{"$nulls":3},"Cup000122g040746.1","Cup000022g020133.1"]
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{"sheet":"(2) DEGs","index":5,"n_rows":3730,"n_cols":16,"rows_kept":3730,"merged":[[0,0,0,3],[0,6,0,9],[0,12,0,13],[0,14,0,15]]}
["UP regulated genes",{"$nulls":5},"Down regulated genes",{"$nulls":5},"Private expressed DEGs",null,"Overlapped DEGs"]
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["Cup000003g002901.1",0.265955241153088,0.0126112754747671,0.0370744629172518]
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["Cup000002g002309.1",0.257935745955052,0.0156852800479735,0.0441769569663356]
["Cup000022g019656.1",0.256074999143868,4.13257499215312E-3,0.0147246183431114]
["Cup000020g018904.1",0.255655500208048,0.0166829650905577,0.0465186047747228]
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["Cup000018g017458.1",0.254172677948719,0.00562758009852577,0.018985604652025]
["Cup000006g006659.1",0.253994998025423,0.0177266583660126,0.0487722125395679]
["Cup000031g024661.1",0.249891518229843,0.01146998788426,0.0343835283584998]
["Cup000111g040288.1",0.245448204214324,0.0137503717155685,0.0397481141393865]
["Cup000234g043665.1",0.244603567782763,0.0144550811726699,0.0414080337910046]

{"sheet":"(3) GO annotation","index":6,"n_rows":339905,"n_cols":2,"rows_kept":4500,"cut":true,"merged":[[0,0,0,1]],"bounds":{"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0}}
[]
["Gene_ID","Gene ontology (GO) term end Enzyme code (EC)"]
["Cup000035g026922.1","GO:0005634"]
["Cup000035g026922.1","GO:0005515"]
["Cup000035g026922.1","GO:0000082"]
["Cup000035g026922.1","GO:0009735"]
["Cup000035g026922.1","GO:0009741"]
["Cup000035g026922.1","GO:0009744"]
["Cup000035g026922.1","GO:0010444"]
["Cup000035g026922.1","GO:0042127"]
["Cup000035g026922.1","GO:0048316"]
["Cup001945g046032.1","GO:0005634"]
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["Cup001945g046032.1","GO:0046982"]
["Cup001945g046032.1","GO:0061630"]
["Cup001945g046032.1","GO:0000122"]
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["Cup001945g046032.1","GO:0009793"]
["Cup001945g046032.1","GO:0009911"]
["Cup001945g046032.1","GO:0009960"]
["Cup001945g046032.1","GO:0016055"]
["Cup001945g046032.1","GO:0016477"]
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["Cup004037g046605.1","EC:3.1.3.16"]
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["Cup004037g046605.1","EC:3.1.3.41"]
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["Cup004671g046689.1","GO:0044444"]
["Cup004910g046717.1","GO:0055087"]
["Cup004910g046717.1","GO:0016441"]
["Cup004910g046717.1","GO:0070478"]
["Cup004910g046717.1","GO:1904278"]
["Cup005108g046737.1","GO:0005634"]
["Cup005108g046737.1","GO:0003700"]
["Cup005108g046737.1","GO:0043425"]
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["Cup005108g046737.1","GO:0006355"]
["Cup005108g046737.1","GO:0009299"]
["Cup005108g046737.1","GO:0009637"]
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["Cup005108g046737.1","GO:0040008"]
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["Cup005291g046760.1","GO:0005634"]
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["Cup005291g046760.1","GO:0005737"]
["Cup005291g046760.1","GO:0003677"]
["Cup005291g046760.1","GO:0005524"]
["Cup005291g046760.1","GO:0009378"]
["Cup005291g046760.1","GO:0043140"]
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["Cup005291g046760.1","GO:0000724"]
["Cup005291g046760.1","GO:0032508"]
["Cup005291g046760.1","EC:3.6.1.3"]
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["Cup005428g046772.1","GO:0005730"]
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["Cup005428g046772.1","GO:0012510"]
["Cup005428g046772.1","GO:0004709"]
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["Cup005428g046772.1","GO:0005524"]
["Cup005428g046772.1","GO:0000165"]
["Cup005428g046772.1","GO:0001666"]
["Cup005428g046772.1","GO:0002229"]
["Cup005428g046772.1","GO:0008219"]
["Cup005428g046772.1","GO:0009414"]
["Cup005428g046772.1","GO:0009617"]
["Cup005428g046772.1","GO:0009620"]
["Cup005428g046772.1","GO:0009686"]
["Cup005428g046772.1","GO:0009744"]
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["Cup005428g046772.1","GO:0009788"]
["Cup005428g046772.1","GO:0009873"]
["Cup005428g046772.1","GO:0010105"]
["Cup005428g046772.1","GO:0010182"]
["Cup005428g046772.1","GO:0018193"]
["Cup005428g046772.1","GO:0046777"]
["Cup005428g046772.1","GO:0048510"]
["Cup005428g046772.1","GO:0071281"]
["Cup005428g046772.1","GO:1900150"]
["Cup005428g046772.1","GO:1900424"]
["Cup005428g046772.1","GO:2000031"]
["Cup005428g046772.1","GO:2000035"]
["Cup005428g046772.1","GO:2000069"]
["Cup005428g046772.1","EC:2.7.11.25"]
["Cup005428g046772.1","EC:2.7.11"]
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["Cup005574g046783.1","GO:0031410"]
["Cup005574g046783.1","GO:0071944"]
["Cup005574g046783.1","GO:0005515"]
["Cup005574g046783.1","GO:0016301"]
["Cup005574g046783.1","GO:0009791"]
["Cup005574g046783.1","GO:0009987"]
["Cup005574g046783.1","GO:0048364"]
["Cup005574g046783.1","GO:0050794"]
["Cup005574g046783.1","GO:0098542"]
["Cup005804g046806.1","GO:0044464"]
["Cup005804g046806.1","GO:0005488"]
["Cup005804g046806.1","GO:0098542"]
["Cup006874g046891.1","GO:0000325"]
["Cup006874g046891.1","GO:0005886"]
["Cup006874g046891.1","GO:0009505"]
["Cup006874g046891.1","GO:0009506"]
["Cup006874g046891.1","GO:0016021"]
["Cup006874g046891.1","GO:0043234"]
["Cup006874g046891.1","GO:0004675"]
["Cup006874g046891.1","GO:0033612"]
["Cup006874g046891.1","GO:0042277"]
["Cup006874g046891.1","GO:0042802"]
["Cup006874g046891.1","GO:0043621"]
["Cup006874g046891.1","GO:0007030"]
["Cup006874g046891.1","GO:0007172"]
["Cup006874g046891.1","GO:0008356"]
["Cup006874g046891.1","GO:0009556"]
["Cup006874g046891.1","GO:0009737"]
["Cup006874g046891.1","GO:0009742"]
["Cup006874g046891.1","GO:0009793"]
["Cup006874g046891.1","GO:0009934"]
["Cup006874g046891.1","GO:0010103"]
["Cup006874g046891.1","GO:0010152"]
["Cup006874g046891.1","GO:0010227"]
["Cup006874g046891.1","GO:0010234"]
["Cup006874g046891.1","GO:0046777"]
["Cup006874g046891.1","EC:2.7.11"]
["Cup007824g046952.1","GO:0009575"]
["Cup007824g046952.1","GO:0010287"]
["Cup007824g046952.1","GO:0016021"]
["Cup007824g046952.1","GO:0031969"]
["Cup007824g046952.1","GO:0004310"]
["Cup007824g046952.1","GO:0016767"]
["Cup007824g046952.1","GO:0046872"]
["Cup007824g046952.1","GO:0046905"]
["Cup007824g046952.1","GO:0051996"]
["Cup007824g046952.1","GO:0006696"]
["Cup007824g046952.1","GO:0016117"]
["Cup007824g046952.1","EC:2.5.1.29"]
["Cup007824g046952.1","EC:2.5.1.32"]
["Cup007824g046952.1","EC:2.5.1.10"]
["Cup007824g046952.1","EC:2.5.1.21"]
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["Cup017417g047252.1","GO:0006468"]
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{"sheet":"(4) AgriGo Up","index":7,"n_rows":140,"n_cols":7,"rows_kept":140}
["GO term","Ontology","Description","Number in input list","Number in BG/Ref","p-value","FDR"]
["GO:0015979","P","photosynthesis",136,238,{"v":5.5E-33,"d":"5.50E-33"},{"v":1e-28,"d":"1.00E-28"}]
["GO:0042254","P","ribosome biogenesis",222,512,{"v":2e-28,"d":"2.00E-28"},{"v":1.9e-24,"d":"1.90E-24"}]
["GO:0006364","P","rRNA processing",160,361,{"v":2.2e-22,"d":"2.20E-22"},{"v":1.4e-18,"d":"1.40E-18"}]
["GO:0006091","P","generation of precursor metabolites and energy",190,460,{"v":7.8E-22,"d":"7.80E-22"},{"v":3.6e-18,"d":"3.60E-18"}]
["GO:0019684","P","photosynthesis, light reaction",77,128,{"v":1.9e-21,"d":"1.90E-21"},{"v":7.2e-18,"d":"7.20E-18"}]
["GO:0016072","P","rRNA metabolic process",161,378,{"v":2.1e-20,"d":"2.10E-20"},{"v":6.4e-17,"d":"6.40E-17"}]
["GO:0034660","P","ncRNA metabolic process",209,543,{"v":1.6e-19,"d":"1.60E-19"},{"v":4.3e-16,"d":"4.30E-16"}]
["GO:0022613","P","ribonucleoprotein complex biogenesis",242,668,{"v":2.2e-18,"d":"2.20E-18"},{"v":4.7e-15,"d":"4.70E-15"}]
["GO:0009657","P","plastid organization",144,339,{"v":2.3e-18,"d":"2.30E-18"},{"v":4.7e-15,"d":"4.70E-15"}]
["GO:0034470","P","ncRNA processing",184,482,{"v":4.6e-17,"d":"4.60E-17"},{"v":8.6E-14,"d":"8.60E-14"}]
["GO:0009658","P","chloroplast organization",113,271,{"v":3.4E-14,"d":"3.40E-14"},{"v":5.8E-11,"d":"5.80E-11"}]
["GO:0009765","P","photosynthesis, light harvesting",29,36,{"v":4.8e-14,"d":"4.80E-14"},{"v":7.4e-11,"d":"7.40E-11"}]
["GO:0006412","P","translation",237,705,{"v":5.6e-14,"d":"5.60E-14"},{"v":8e-11,"d":"8.00E-11"}]
["GO:0019318","P","hexose metabolic process",99,238,{"v":1.4e-12,"d":"1.40E-12"},{"v":1.8E-9,"d":"1.80E-09"}]
["GO:0005996","P","monosaccharide metabolic process",114,295,{"v":9.8e-12,"d":"9.80E-12"},{"v":1.2E-8,"d":"1.20E-08"}]
["GO:0055114","P","oxidation reduction",227,702,{"v":1.2e-11,"d":"1.20E-11"},{"v":1.4E-8,"d":"1.40E-08"}]
["GO:0009735","P","response to cytokinin stimulus",143,401,{"v":3.2e-11,"d":"3.20E-11"},{"v":3.5e-08,"d":"3.50E-08"}]
["GO:0009767","P","photosynthetic electron transport chain",38,64,{"v":3.7e-11,"d":"3.70E-11"},{"v":3.6e-08,"d":"3.60E-08"}]
["GO:0015977","P","carbon fixation",21,25,{"v":3.5e-11,"d":"3.50E-11"},{"v":3.6e-08,"d":"3.60E-08"}]
["GO:0000462","P","maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)",39,67,{"v":4.8e-11,"d":"4.80E-11"},{"v":4.5e-08,"d":"4.50E-08"}]
["GO:0009768","P","photosynthesis, light harvesting in photosystem I",15,15,{"v":7.6e-11,"d":"7.60E-11"},{"v":6.7e-08,"d":"6.70E-08"}]
["GO:0000470","P","maturation of LSU-rRNA",32,51,{"v":1.7e-10,"d":"1.70E-10"},{"v":1.4e-07,"d":"1.40E-07"}]
["GO:0006006","P","glucose metabolic process",76,183,{"v":4.9e-10,"d":"4.90E-10"},{"v":4e-07,"d":"4.00E-07"}]
["GO:0046686","P","response to cadmium ion",199,629,{"v":1.2E-9,"d":"1.20E-09"},{"v":9.7e-07,"d":"9.70E-07"}]
["GO:0019253","P","reductive pentose-phosphate cycle",18,22,{"v":2.1e-09,"d":"2.10E-09"},{"v":1.5E-6,"d":"1.50E-06"}]
["GO:0019685","P","photosynthesis, dark reaction",18,22,{"v":2.1e-09,"d":"2.10E-09"},{"v":1.5E-6,"d":"1.50E-06"}]
["GO:0016108","P","tetraterpenoid metabolic process",26,40,{"v":2.8e-09,"d":"2.80E-09"},{"v":1.9E-6,"d":"1.90E-06"}]
["GO:0016116","P","carotenoid metabolic process",26,40,{"v":2.8e-09,"d":"2.80E-09"},{"v":1.9E-6,"d":"1.90E-06"}]
["GO:0030490","P","maturation of SSU-rRNA",40,78,{"v":4.6e-09,"d":"4.60E-09"},{"v":2.9e-06,"d":"2.90E-06"}]
["GO:0016052","P","carbohydrate catabolic process",91,246,{"v":1.2E-8,"d":"1.20E-08"},{"v":7.5e-06,"d":"7.50E-06"}]
["GO:0019320","P","hexose catabolic process",45,95,{"v":1.3e-08,"d":"1.30E-08"},{"v":7.7e-06,"d":"7.70E-06"}]
["GO:0006096","P","glycolysis",35,66,{"v":1.3e-08,"d":"1.30E-08"},{"v":7.7e-06,"d":"7.70E-06"}]
["GO:0046148","P","pigment biosynthetic process",79,207,{"v":2.2e-08,"d":"2.20E-08"},{"v":1.2E-5,"d":"1.20E-05"}]
["GO:0019319","P","hexose biosynthetic process",35,67,{"v":2.2e-08,"d":"2.20E-08"},{"v":1.2E-5,"d":"1.20E-05"}]
["GO:0046164","P","alcohol catabolic process",50,112,{"v":2.4E-8,"d":"2.40E-08"},{"v":1.3e-05,"d":"1.30E-05"}]
["GO:0046365","P","monosaccharide catabolic process",45,97,{"v":2.8e-08,"d":"2.80E-08"},{"v":1.5E-5,"d":"1.50E-05"}]
["GO:0044281","P","small molecule metabolic process",653,2506,{"v":3.8e-08,"d":"3.80E-08"},{"v":1.9e-05,"d":"1.90E-05"}]
["GO:0016051","P","carbohydrate biosynthetic process",168,537,{"v":4.5e-08,"d":"4.50E-08"},{"v":2.1e-05,"d":"2.10E-05"}]
["GO:0006007","P","glucose catabolic process",42,89,{"v":4.4e-08,"d":"4.40E-08"},{"v":2.1e-05,"d":"2.10E-05"}]
["GO:0000154","P","rRNA modification",17,23,{"v":9e-08,"d":"9.00E-08"},{"v":4.2e-05,"d":"4.20E-05"}]
["GO:0044275","P","cellular carbohydrate catabolic process",74,197,{"v":1.2e-07,"d":"1.20E-07"},{"v":5.5e-05,"d":"5.50E-05"}]
["GO:0044085","P","cellular component biogenesis",493,1862,{"v":1.5e-07,"d":"1.50E-07"},{"v":6.6e-05,"d":"6.60E-05"}]
["GO:0022900","P","electron transport chain",61,155,{"v":2.2e-07,"d":"2.20E-07"},{"v":9.6e-05,"d":"9.60E-05"}]
["GO:0000463","P","maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)",20,31,{"v":2.3e-07,"d":"2.30E-07"},{"v":9.8e-05,"d":"9.80E-05"}]
["GO:0016117","P","carotenoid biosynthetic process",19,29,{"v":3.2e-07,"d":"3.20E-07"},0.00013]
["GO:0016109","P","tetraterpenoid biosynthetic process",19,29,{"v":3.2e-07,"d":"3.20E-07"},0.00013]
["GO:0009773","P","photosynthetic electron transport in photosystem I",15,20,{"v":3.9e-07,"d":"3.90E-07"},0.00015]
["GO:0006414","P","translational elongation",32,65,{"v":5.1e-07,"d":"5.10E-07"},0.00019]
["GO:0018298","P","protein-chromophore linkage",20,32,{"v":4.9e-07,"d":"4.90E-07"},0.00019]
["GO:0051186","P","cofactor metabolic process",152,494,{"v":5.3e-07,"d":"5.30E-07"},0.0002]
["GO:0005975","P","carbohydrate metabolic process",315,1149,{"v":7e-07,"d":"7.00E-07"},0.00026]
["GO:0044283","P","small molecule biosynthetic process",316,1155,{"v":8.1e-07,"d":"8.10E-07"},2.9E-4]
["GO:0000478","P","endonucleolytic cleavages during rRNA processing",22,38,{"v":8.7e-07,"d":"8.70E-07"},3.1E-4]
["GO:0006094","P","gluconeogenesis",23,41,{"v":1.1e-06,"d":"1.10E-06"},0.00037]
["GO:0046364","P","monosaccharide biosynthetic process",41,96,{"v":1.7E-6,"d":"1.70E-06"},0.00057]
["GO:0034637","P","cellular carbohydrate biosynthetic process",142,466,{"v":2.1e-06,"d":"2.10E-06"},0.00069]
["GO:0000469","P","cleavages during rRNA processing",25,48,{"v":2.3E-6,"d":"2.30E-06"},0.00076]
["GO:0016122","P","xanthophyll metabolic process",14,20,{"v":3.7e-06,"d":"3.70E-06"},0.0012]
["GO:0006090","P","pyruvate metabolic process",35,80,{"v":4.9e-06,"d":"4.90E-06"},1.5E-3]
["GO:0042440","P","pigment metabolic process",86,260,{"v":6.2e-06,"d":"6.20E-06"},1.9E-3]
["GO:0043038","P","amino acid activation",29,62,{"v":6.2e-06,"d":"6.20E-06"},1.9E-3]
["GO:0043039","P","tRNA aminoacylation",29,62,{"v":6.2e-06,"d":"6.20E-06"},1.9E-3]
["GO:0000479","P","endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)",20,36,{"v":6.5e-06,"d":"6.50E-06"},1.9E-3]
["GO:0044042","P","glucan metabolic process",79,235,{"v":7.3e-06,"d":"7.30E-06"},0.0021]
["GO:0015992","P","proton transport",36,85,{"v":8.8e-06,"d":"8.80E-06"},0.0025]
["GO:0006818","P","hydrogen transport",36,85,{"v":8.8e-06,"d":"8.80E-06"},0.0025]
["GO:0009808","P","lignin metabolic process",29,63,{"v":9.2E-6,"d":"9.20E-06"},0.0026]
["GO:0044262","P","cellular carbohydrate metabolic process",264,973,{"v":9.8e-06,"d":"9.80E-06"},0.0027]
["GO:0006066","P","alcohol metabolic process",161,555,{"v":1.1E-5,"d":"1.10E-05"},0.0029]
["GO:0009117","P","nucleotide metabolic process",81,245,{"v":1.1E-5,"d":"1.10E-05"},0.003]
["GO:0006753","P","nucleoside phosphate metabolic process",81,245,{"v":1.1E-5,"d":"1.10E-05"},0.003]
["GO:0009259","P","ribonucleotide metabolic process",47,123,{"v":1.2E-5,"d":"1.20E-05"},0.0032]
["GO:0009145","P","purine nucleoside triphosphate biosynthetic process",21,40,{"v":1.3e-05,"d":"1.30E-05"},0.0032]
["GO:0045037","P","protein import into chloroplast stroma",15,24,{"v":1.4E-5,"d":"1.40E-05"},0.0034]
["GO:0006073","P","cellular glucan metabolic process",75,224,{"v":1.4E-5,"d":"1.40E-05"},0.0035]
["GO:0009809","P","lignin biosynthetic process",24,49,{"v":1.4E-5,"d":"1.40E-05"},0.0035]
["GO:0009152","P","purine ribonucleotide biosynthetic process",30,68,{"v":1.8E-5,"d":"1.80E-05"},0.0044]
["GO:0010027","P","thylakoid membrane organization",25,53,{"v":2.2e-05,"d":"2.20E-05"},0.0052]
["GO:0009668","P","plastid membrane organization",25,53,{"v":2.2e-05,"d":"2.20E-05"},0.0052]
["GO:0010035","P","response to inorganic substance",299,1131,{"v":2.4e-05,"d":"2.40E-05"},0.0056]
["GO:0009260","P","ribonucleotide biosynthetic process",38,95,{"v":2.4e-05,"d":"2.40E-05"},0.0056]
["GO:0009642","P","response to light intensity",72,217,{"v":2.9E-5,"d":"2.90E-05"},0.0065]
["GO:0019676","P","ammonia assimilation cycle",9,11,{"v":3e-05,"d":"3.00E-05"},0.0068]
["GO:0009142","P","nucleoside triphosphate biosynthetic process",26,57,{"v":3.2e-05,"d":"3.20E-05"},0.007]
["GO:0055085","P","transmembrane transport",129,439,{"v":3.7e-05,"d":"3.70E-05"},0.008]
["GO:0009704","P","de-etiolation",14,23,{"v":4.1E-5,"d":"4.10E-05"},0.0087]
["GO:0010206","P","photosystem II repair",12,18,{"v":4e-05,"d":"4.00E-05"},0.0087]
["GO:0010109","P","regulation of photosynthesis",26,58,{"v":4.6E-5,"d":"4.60E-05"},0.0096]
["GO:0006418","P","tRNA aminoacylation for protein translation",26,58,{"v":4.6E-5,"d":"4.60E-05"},0.0096]
["GO:0006766","P","vitamin metabolic process",47,129,{"v":5.1E-5,"d":"5.10E-05"},0.01]
["GO:0010038","P","response to metal ion",229,851,{"v":5.6e-05,"d":"5.60E-05"},0.011]
["GO:0000184","P","nuclear-transcribed mRNA catabolic process, nonsense-mediated decay",71,217,{"v":5.4e-05,"d":"5.40E-05"},0.011]
["GO:0009150","P","purine ribonucleotide metabolic process",36,91,{"v":5.1E-5,"d":"5.10E-05"},0.011]
["GO:0006732","P","coenzyme metabolic process",98,322,{"v":6.7e-05,"d":"6.70E-05"},0.013]
["GO:0046483","P","heterocycle metabolic process",169,608,{"v":7.9e-05,"d":"7.90E-05"},0.015]
["GO:0019252","P","starch biosynthetic process",20,41,{"v":7.9e-05,"d":"7.90E-05"},0.015]
["GO:0006614","P","SRP-dependent cotranslational protein targeting to membrane",59,175,{"v":8.5e-05,"d":"8.50E-05"},0.016]
["GO:0006164","P","purine nucleotide biosynthetic process",30,73,{"v":9.2E-5,"d":"9.20E-05"},0.018]
["GO:0031167","P","rRNA methylation",9,12,{"v":9.8e-05,"d":"9.80E-05"},0.018]
["GO:0009110","P","vitamin biosynthetic process",39,104,1E-4,0.019]
["GO:0016123","P","xanthophyll biosynthetic process",8,10,1.2E-4,0.021]
["GO:0006268","P","DNA unwinding during replication",8,10,1.2E-4,0.021]
["GO:0006613","P","cotranslational protein targeting to membrane",59,177,1.2E-4,0.022]
["GO:0009409","P","response to cold",172,626,0.00013,0.023]
["GO:0009144","P","purine nucleoside triphosphate metabolic process",26,61,0.00013,0.023]
["GO:0044264","P","cellular polysaccharide metabolic process",104,353,0.00016,0.029]
["GO:0009165","P","nucleotide biosynthetic process",49,142,0.00017,0.029]
["GO:0044271","P","cellular nitrogen compound biosynthetic process",158,572,0.00018,0.03]
["GO:0009109","P","coenzyme catabolic process",26,62,0.00018,0.03]
["GO:0015991","P","ATP hydrolysis coupled proton transport",19,40,0.00018,0.03]
["GO:0015988","P","energy coupled proton transport, against electrochemical gradient",19,40,0.00018,0.03]
["GO:0046246","P","terpene biosynthetic process",18,37,0.00019,0.03]
["GO:0009206","P","purine ribonucleoside triphosphate biosynthetic process",18,37,0.00019,0.03]
["GO:0006754","P","ATP biosynthetic process",17,34,0.00018,0.03]
["GO:0043572","P","plastid fission",17,34,0.00018,0.03]
["GO:0042548","P","regulation of photosynthesis, light reaction",16,31,0.00018,0.03]
["GO:0055086","P","nucleobase, nucleoside and nucleotide metabolic process",98,331,0.0002,0.032]
["GO:0048316","P","seed development",270,1043,0.00022,0.034]
["GO:0009250","P","glucan biosynthetic process",50,147,0.00022,0.034]
["GO:0046351","P","disaccharide biosynthetic process",23,53,0.00022,0.035]
["GO:0051188","P","cofactor biosynthetic process",81,266,0.00025,0.039]
["GO:0009643","P","photosynthetic acclimation",11,18,2.7E-4,0.04]
["GO:0019853","P","L-ascorbic acid biosynthetic process",11,18,2.7E-4,0.04]
["GO:0019852","P","L-ascorbic acid metabolic process",11,18,2.7E-4,0.04]
["GO:0019752","P","carboxylic acid metabolic process",323,1273,0.00028,0.041]
["GO:0033014","P","tetrapyrrole biosynthetic process",38,105,2.9E-4,0.041]
["GO:0045036","P","protein targeting to chloroplast",24,57,2.9E-4,0.041]
["GO:0006536","P","glutamate metabolic process",19,41,0.00028,0.041]
["GO:0009645","P","response to low light intensity stimulus",17,35,2.9E-4,0.041]
["GO:0005977","P","glycogen metabolic process",16,32,0.00028,0.041]
["GO:0010020","P","chloroplast fission",16,32,0.00028,0.041]
["GO:0005976","P","polysaccharide metabolic process",119,419,3.1E-4,0.043]
["GO:0042180","P","cellular ketone metabolic process",329,1302,3.3E-4,0.045]
["GO:0046165","P","alcohol biosynthetic process",51,153,3.3E-4,0.045]
["GO:0009141","P","nucleoside triphosphate metabolic process",31,81,3.3E-4,0.045]
["GO:0009312","P","oligosaccharide biosynthetic process",31,81,3.3E-4,0.045]
["GO:0005982","P","starch metabolic process",31,81,3.3E-4,0.045]
["GO:0046034","P","ATP metabolic process",22,51,0.00034,0.045]
["GO:0006779","P","porphyrin biosynthetic process",36,99,0.00037,0.05]

{"sheet":"(5) AgriGo Down","index":8,"n_rows":33,"n_cols":7,"rows_kept":33}
["GO term","Ontology","Description","Number in input list","Number in BG/Ref","p-value","FDR"]
["GO:0009607","P","response to biotic stimulus",427,1783,{"v":2.1e-11,"d":"2.10E-11"},{"v":1.8E-7,"d":"1.80E-07"}]
["GO:0051707","P","response to other organism",399,1651,{"v":2.3e-11,"d":"2.30E-11"},{"v":1.8E-7,"d":"1.80E-07"}]
["GO:0009620","P","response to fungus",161,576,{"v":4.2E-10,"d":"4.20E-10"},{"v":2.2e-06,"d":"2.20E-06"}]
["GO:0051704","P","multi-organism process",487,2170,{"v":1E-8,"d":"1.00E-08"},{"v":3.9e-05,"d":"3.90E-05"}]
["GO:0050832","P","defense response to fungus",113,391,{"v":1.8e-08,"d":"1.80E-08"},{"v":5.5e-05,"d":"5.50E-05"}]
["GO:0009751","P","response to salicylic acid stimulus",83,273,{"v":1.1e-07,"d":"1.10E-07"},2.9E-4]
["GO:0006952","P","defense response",379,1696,{"v":3.7E-7,"d":"3.70E-07"},0.00072]
["GO:0034440","P","lipid oxidation",31,72,{"v":3.3e-07,"d":"3.30E-07"},0.00072]
["GO:0046395","P","carboxylic acid catabolic process",57,178,{"v":1.5E-6,"d":"1.50E-06"},0.0024]
["GO:0016054","P","organic acid catabolic process",57,178,{"v":1.5E-6,"d":"1.50E-06"},0.0024]
["GO:0009617","P","response to bacterium",199,833,{"v":1.9E-6,"d":"1.90E-06"},0.0027]
["GO:0044242","P","cellular lipid catabolic process",38,106,{"v":4.1e-06,"d":"4.10E-06"},5.3E-3]
["GO:0000302","P","response to reactive oxygen species",78,278,{"v":7.4e-06,"d":"7.40E-06"},0.0088]
["GO:0019395","P","fatty acid oxidation",27,67,{"v":8.3e-06,"d":"8.30E-06"},0.0091]
["GO:0030258","P","lipid modification",44,135,{"v":1.3e-05,"d":"1.30E-05"},0.014]
["GO:0009310","P","amine catabolic process",37,108,{"v":1.8E-5,"d":"1.80E-05"},0.017]
["GO:0042742","P","defense response to bacterium",156,657,{"v":2.7e-05,"d":"2.70E-05"},0.023]
["GO:0009723","P","response to ethylene stimulus",101,393,{"v":2.5e-05,"d":"2.50E-05"},0.023]
["GO:0009814","P","defense response, incompatible interaction",87,331,{"v":3.5e-05,"d":"3.50E-05"},0.029]
["GO:0009062","P","fatty acid catabolic process",24,61,{"v":4.1E-5,"d":"4.10E-05"},0.031]
["GO:0006518","P","peptide metabolic process",36,109,{"v":5.5e-05,"d":"5.50E-05"},0.041]
["GO:0009737","P","response to abscisic acid stimulus",219,981,{"v":6.2e-05,"d":"6.20E-05"},0.043]
["GO:0045087","P","innate immune response",167,725,{"v":7.8e-05,"d":"7.80E-05"},0.043]
["GO:0010817","P","regulation of hormone levels",84,324,{"v":7.8e-05,"d":"7.80E-05"},0.043]
["GO:0016042","P","lipid catabolic process",44,144,{"v":7.5e-05,"d":"7.50E-05"},0.043]
["GO:0009682","P","induced systemic resistance",23,59,{"v":6.9e-05,"d":"6.90E-05"},0.043]
["GO:0006635","P","fatty acid beta-oxidation",21,52,{"v":7.7e-05,"d":"7.70E-05"},0.043]
["GO:0043171","P","peptide catabolic process",15,31,{"v":6.9e-05,"d":"6.90E-05"},0.043]
["GO:0080086","P","stamen filament development",11,19,{"v":8.1e-05,"d":"8.10E-05"},0.043]
["GO:0009739","P","response to gibberellin stimulus",76,288,{"v":8.9e-05,"d":"8.90E-05"},0.044]
["GO:0009063","P","cellular amino acid catabolic process",34,103,{"v":8.8e-05,"d":"8.80E-05"},0.044]
["GO:0006487","P","protein amino acid N-linked glycosylation",23,60,{"v":9.4e-05,"d":"9.40E-05"},0.045]

{"sheet":"Additional Figures","index":9,"n_rows":22,"n_cols":1,"rows_kept":22}
["Additional Figure 1: Gel electrophoretic separation of digested PCR products (left 381e, right TF). Relevant fragment sizes (bp) are denoted on the right side (1Kb plus)."]
{"$rows_empty":20}
["Additional Figure 2: Comparison of the ZYMV tolerant line 381e (left) and the susceptible True French (right) 12 days after ZYMV inoculation."]